Query 007583
Match_columns 597
No_of_seqs 651 out of 4488
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 12:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2262 HflX GTPases [General 100.0 1.4E-81 3E-86 657.3 36.2 319 60-428 2-320 (411)
2 PRK11058 GTPase HflX; Provisio 100.0 8.7E-69 1.9E-73 581.8 40.0 318 59-426 6-323 (426)
3 TIGR03156 GTP_HflX GTP-binding 100.0 7.3E-68 1.6E-72 562.4 37.8 315 63-426 1-315 (351)
4 KOG0410 Predicted GTP binding 100.0 1.1E-58 2.4E-63 468.4 21.8 326 77-455 4-332 (410)
5 PF13167 GTP-bdg_N: GTP-bindin 99.9 3E-27 6.4E-32 204.4 8.7 90 77-188 6-95 (95)
6 cd01878 HflX HflX subfamily. 99.9 8.5E-25 1.8E-29 214.4 24.3 168 251-427 1-168 (204)
7 cd01886 EF-G Elongation factor 99.9 2.1E-24 4.5E-29 222.2 14.4 241 299-562 1-267 (270)
8 PRK05291 trmE tRNA modificatio 99.9 5.4E-23 1.2E-27 225.9 23.0 215 173-426 118-335 (449)
9 cd04169 RF3 RF3 subfamily. Pe 99.9 5.1E-22 1.1E-26 204.2 17.3 233 297-563 2-265 (267)
10 cd04168 TetM_like Tet(M)-like 99.9 2.5E-22 5.5E-27 203.1 13.0 215 299-563 1-235 (237)
11 cd04170 EF-G_bact Elongation f 99.9 5.2E-22 1.1E-26 203.9 14.6 239 299-562 1-265 (268)
12 PF02421 FeoB_N: Ferrous iron 99.8 1.5E-20 3.3E-25 177.9 12.3 119 299-427 2-120 (156)
13 KOG1532 GTPase XAB1, interacts 99.8 1.2E-20 2.6E-25 188.6 9.0 203 296-572 18-273 (366)
14 COG1159 Era GTPase [General fu 99.8 1.1E-19 2.4E-24 185.2 15.7 126 296-429 5-131 (298)
15 PRK12299 obgE GTPase CgtA; Rev 99.8 3.1E-19 6.8E-24 189.0 18.1 128 296-427 157-286 (335)
16 COG1160 Predicted GTPases [Gen 99.8 3.2E-19 6.8E-24 190.8 16.8 120 298-425 4-125 (444)
17 TIGR00436 era GTP-binding prot 99.8 9.5E-19 2.1E-23 180.1 18.4 118 299-426 2-121 (270)
18 COG0486 ThdF Predicted GTPase 99.8 1.3E-18 2.8E-23 186.7 19.9 154 256-429 185-341 (454)
19 PRK12298 obgE GTPase CgtA; Rev 99.8 2.4E-18 5.3E-23 185.6 19.2 126 297-426 159-289 (390)
20 TIGR00484 EF-G translation elo 99.8 4.2E-19 9.1E-24 204.8 14.2 245 296-564 9-280 (689)
21 PRK00741 prfC peptide chain re 99.8 8.2E-19 1.8E-23 195.8 15.6 237 296-564 9-275 (526)
22 PRK00007 elongation factor G; 99.8 7.9E-19 1.7E-23 202.5 15.8 246 296-564 9-281 (693)
23 PF00009 GTP_EFTU: Elongation 99.8 1.2E-18 2.5E-23 169.5 13.8 115 296-425 2-135 (188)
24 TIGR02729 Obg_CgtA Obg family 99.8 3.8E-18 8.3E-23 180.4 17.8 128 296-427 156-288 (329)
25 PRK12297 obgE GTPase CgtA; Rev 99.8 7.2E-18 1.6E-22 183.3 18.5 124 297-424 158-286 (424)
26 PRK12296 obgE GTPase CgtA; Rev 99.8 4.2E-18 9E-23 187.6 16.7 129 296-426 158-298 (500)
27 cd01898 Obg Obg subfamily. Th 99.8 1.3E-17 2.8E-22 157.4 16.6 125 299-427 2-129 (170)
28 PRK12739 elongation factor G; 99.8 4.1E-18 9E-23 196.6 15.5 245 296-564 7-279 (691)
29 KOG1489 Predicted GTP-binding 99.8 3.3E-18 7.1E-23 174.6 12.1 127 296-426 195-326 (366)
30 cd01897 NOG NOG1 is a nucleola 99.8 1.9E-17 4.1E-22 156.2 16.0 123 298-426 1-127 (168)
31 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 6.5E-17 1.4E-21 152.1 17.6 114 298-426 1-116 (168)
32 PRK15494 era GTPase Era; Provi 99.7 5.2E-17 1.1E-21 172.6 18.9 121 297-426 52-174 (339)
33 PRK00089 era GTPase Era; Revie 99.7 6.1E-17 1.3E-21 168.1 18.5 122 297-426 5-127 (292)
34 cd04171 SelB SelB subfamily. 99.7 6.4E-17 1.4E-21 151.1 16.3 114 299-427 2-119 (164)
35 PRK13351 elongation factor G; 99.7 2.3E-17 4.9E-22 190.6 15.0 245 296-564 7-279 (687)
36 COG1160 Predicted GTPases [Gen 99.7 4.5E-17 9.8E-22 174.4 14.4 125 296-428 177-305 (444)
37 cd01894 EngA1 EngA1 subfamily. 99.7 1.9E-16 4.1E-21 146.7 16.1 117 301-426 1-119 (157)
38 COG0536 Obg Predicted GTPase [ 99.7 8.6E-17 1.9E-21 166.2 14.8 128 297-428 159-291 (369)
39 PRK03003 GTP-binding protein D 99.7 1.5E-16 3.3E-21 176.2 17.9 123 296-426 210-336 (472)
40 TIGR00491 aIF-2 translation in 99.7 1.4E-16 2.9E-21 179.8 17.7 116 296-427 3-136 (590)
41 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1E-15 2.2E-20 167.9 23.5 146 260-426 176-324 (442)
42 PRK09866 hypothetical protein; 99.7 3.3E-16 7.1E-21 173.8 19.6 61 254-332 44-105 (741)
43 cd04163 Era Era subfamily. Er 99.7 4.4E-16 9.6E-21 144.3 16.7 122 297-426 3-125 (168)
44 cd01889 SelB_euk SelB subfamil 99.7 3.4E-16 7.3E-21 152.5 16.5 114 299-427 2-135 (192)
45 cd04164 trmE TrmE (MnmE, ThdF, 99.7 8.1E-16 1.8E-20 142.1 18.1 119 298-426 2-121 (157)
46 COG1084 Predicted GTPase [Gene 99.7 5.1E-16 1.1E-20 159.9 17.8 160 259-430 135-298 (346)
47 TIGR00503 prfC peptide chain r 99.7 2.4E-16 5.2E-21 176.2 16.7 117 296-428 10-148 (527)
48 TIGR03594 GTPase_EngA ribosome 99.7 4.5E-16 9.7E-21 169.9 18.3 122 296-425 171-296 (429)
49 TIGR03594 GTPase_EngA ribosome 99.7 5.2E-16 1.1E-20 169.5 18.7 119 299-426 1-121 (429)
50 PRK03003 GTP-binding protein D 99.7 6.4E-16 1.4E-20 171.2 19.4 122 296-426 37-160 (472)
51 cd01896 DRG The developmentall 99.7 6.5E-16 1.4E-20 156.0 17.5 137 299-439 2-148 (233)
52 cd01879 FeoB Ferrous iron tran 99.7 3.9E-16 8.4E-21 145.1 14.6 115 302-427 1-116 (158)
53 cd01888 eIF2_gamma eIF2-gamma 99.7 3.3E-16 7.1E-21 154.5 14.8 115 299-426 2-151 (203)
54 PRK00093 GTP-binding protein D 99.7 5.1E-16 1.1E-20 170.0 17.3 123 296-426 172-298 (435)
55 cd04109 Rab28 Rab28 subfamily. 99.7 1.2E-15 2.7E-20 151.4 18.4 120 299-426 2-123 (215)
56 COG0532 InfB Translation initi 99.7 4.8E-16 1E-20 169.0 15.8 117 296-428 4-123 (509)
57 PRK09518 bifunctional cytidyla 99.7 6.5E-16 1.4E-20 179.0 17.7 123 296-426 449-575 (712)
58 cd01881 Obg_like The Obg-like 99.7 6E-16 1.3E-20 146.5 14.2 123 302-427 1-135 (176)
59 cd00881 GTP_translation_factor 99.7 1.1E-15 2.4E-20 146.1 15.7 113 299-427 1-129 (189)
60 COG0480 FusA Translation elong 99.7 2.4E-16 5.2E-21 179.7 12.7 245 295-564 8-279 (697)
61 cd04142 RRP22 RRP22 subfamily. 99.7 1.7E-15 3.6E-20 149.1 16.8 127 299-426 2-130 (198)
62 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.2E-15 2.6E-20 143.7 15.1 115 299-426 1-121 (167)
63 cd01864 Rab19 Rab19 subfamily. 99.7 3.5E-15 7.6E-20 140.8 17.4 117 297-426 3-122 (165)
64 cd01861 Rab6 Rab6 subfamily. 99.7 1.9E-15 4E-20 141.4 15.2 117 299-426 2-119 (161)
65 PRK00093 GTP-binding protein D 99.7 2.9E-15 6.2E-20 164.1 18.9 120 298-426 2-123 (435)
66 PRK04004 translation initiatio 99.7 1.7E-15 3.6E-20 171.4 17.5 115 296-426 5-137 (586)
67 cd01884 EF_Tu EF-Tu subfamily. 99.7 1E-15 2.3E-20 150.5 13.7 113 298-426 3-132 (195)
68 cd01895 EngA2 EngA2 subfamily. 99.7 2.9E-15 6.3E-20 140.4 15.9 123 297-427 2-128 (174)
69 PRK04213 GTP-binding protein; 99.7 2.6E-15 5.6E-20 146.7 16.1 120 297-427 9-145 (201)
70 smart00175 RAB Rab subfamily o 99.7 7.4E-15 1.6E-19 137.3 18.4 115 299-426 2-119 (164)
71 CHL00189 infB translation init 99.6 2.6E-15 5.7E-20 172.3 17.2 115 296-426 243-361 (742)
72 cd04157 Arl6 Arl6 subfamily. 99.6 4.5E-15 9.7E-20 138.8 15.8 116 299-426 1-118 (162)
73 PRK09518 bifunctional cytidyla 99.6 3.9E-15 8.5E-20 172.5 18.8 122 296-426 274-397 (712)
74 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 8.2E-15 1.8E-19 138.3 17.5 116 298-426 3-121 (166)
75 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.8E-15 3.9E-20 149.8 13.6 113 299-426 1-144 (208)
76 cd01865 Rab3 Rab3 subfamily. 99.6 8.6E-15 1.9E-19 138.5 17.6 117 298-426 2-120 (165)
77 PRK05306 infB translation init 99.6 2.3E-15 5E-20 174.1 16.5 114 296-426 289-403 (787)
78 PRK10512 selenocysteinyl-tRNA- 99.6 3E-15 6.5E-20 170.2 17.2 114 299-427 2-119 (614)
79 cd01862 Rab7 Rab7 subfamily. 99.6 1.3E-14 2.7E-19 137.1 18.7 119 299-426 2-123 (172)
80 cd01868 Rab11_like Rab11-like. 99.6 8.7E-15 1.9E-19 137.8 17.2 117 297-426 3-122 (165)
81 cd04119 RJL RJL (RabJ-Like) su 99.6 1.3E-14 2.8E-19 135.9 18.2 120 299-426 2-124 (168)
82 cd01866 Rab2 Rab2 subfamily. 99.6 1.3E-14 2.9E-19 137.7 18.0 119 296-426 3-123 (168)
83 COG0370 FeoB Fe2+ transport sy 99.6 3.1E-15 6.6E-20 166.8 15.1 120 298-427 4-123 (653)
84 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.2E-14 2.7E-19 135.8 17.0 113 299-426 1-115 (160)
85 PRK15467 ethanolamine utilizat 99.6 6.8E-15 1.5E-19 139.6 15.4 103 299-426 3-105 (158)
86 PRK12740 elongation factor G; 99.6 1.9E-15 4.2E-20 174.1 14.0 237 303-564 1-263 (668)
87 cd04144 Ras2 Ras2 subfamily. 99.6 1.6E-14 3.5E-19 140.4 18.4 118 299-426 1-120 (190)
88 cd04124 RabL2 RabL2 subfamily. 99.6 7.8E-15 1.7E-19 138.5 15.5 111 299-425 2-117 (161)
89 cd00879 Sar1 Sar1 subfamily. 99.6 1.7E-14 3.7E-19 139.4 17.9 114 297-426 19-134 (190)
90 cd04112 Rab26 Rab26 subfamily. 99.6 3.1E-14 6.7E-19 138.6 19.8 115 299-426 2-120 (191)
91 TIGR00487 IF-2 translation ini 99.6 5.6E-15 1.2E-19 166.9 16.7 115 296-426 86-201 (587)
92 cd01891 TypA_BipA TypA (tyrosi 99.6 1.3E-14 2.9E-19 141.5 17.2 113 297-426 2-131 (194)
93 KOG1191 Mitochondrial GTPase [ 99.6 1.2E-14 2.7E-19 155.9 18.2 128 298-427 269-404 (531)
94 cd01890 LepA LepA subfamily. 99.6 1.4E-14 3E-19 138.2 16.9 114 298-426 1-133 (179)
95 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.5E-14 3.3E-19 135.5 16.8 117 298-426 3-121 (164)
96 COG1163 DRG Predicted GTPase [ 99.6 4.5E-15 9.8E-20 152.4 14.2 154 255-417 25-179 (365)
97 TIGR00475 selB selenocysteine- 99.6 6.8E-15 1.5E-19 166.6 17.0 112 299-427 2-118 (581)
98 cd04114 Rab30 Rab30 subfamily. 99.6 1.9E-14 4.2E-19 135.8 17.4 118 296-426 6-126 (169)
99 cd04154 Arl2 Arl2 subfamily. 99.6 2.4E-14 5.1E-19 136.7 18.0 115 296-426 13-129 (173)
100 PRK09554 feoB ferrous iron tra 99.6 7.7E-15 1.7E-19 170.3 17.4 119 298-426 4-126 (772)
101 cd01867 Rab8_Rab10_Rab13_like 99.6 1.6E-14 3.4E-19 136.9 16.4 118 297-426 3-122 (167)
102 PF01926 MMR_HSR1: 50S ribosom 99.6 8.5E-15 1.8E-19 131.0 13.7 114 299-421 1-116 (116)
103 smart00173 RAS Ras subfamily o 99.6 1.7E-14 3.7E-19 135.4 16.5 116 299-426 2-119 (164)
104 KOG1144 Translation initiation 99.6 1.3E-15 2.7E-20 168.2 9.9 198 295-564 473-688 (1064)
105 cd04151 Arl1 Arl1 subfamily. 99.6 2E-14 4.2E-19 134.9 16.7 112 299-426 1-114 (158)
106 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 2.4E-14 5.2E-19 138.5 17.6 116 298-426 4-123 (183)
107 cd04158 ARD1 ARD1 subfamily. 99.6 2.3E-14 5.1E-19 136.5 17.2 113 299-426 1-114 (169)
108 PRK00454 engB GTP-binding prot 99.6 1.7E-14 3.8E-19 139.7 16.6 121 296-427 23-150 (196)
109 cd04106 Rab23_lke Rab23-like s 99.6 2.6E-14 5.6E-19 133.8 17.2 115 299-426 2-120 (162)
110 cd04136 Rap_like Rap-like subf 99.6 2.2E-14 4.7E-19 134.2 16.6 116 298-426 2-120 (163)
111 cd04139 RalA_RalB RalA/RalB su 99.6 2.8E-14 6.1E-19 133.2 17.3 116 299-426 2-119 (164)
112 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 2.3E-14 4.9E-19 140.6 17.3 119 299-426 2-124 (201)
113 cd04140 ARHI_like ARHI subfami 99.6 1.5E-14 3.2E-19 136.9 15.5 119 298-426 2-122 (165)
114 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.5E-14 3.1E-19 134.7 15.0 117 298-426 2-120 (162)
115 cd04122 Rab14 Rab14 subfamily. 99.6 4E-14 8.6E-19 133.9 18.1 116 298-426 3-121 (166)
116 KOG1423 Ras-like GTPase ERA [C 99.6 8.6E-15 1.9E-19 149.0 14.2 129 296-430 71-203 (379)
117 cd00880 Era_like Era (E. coli 99.6 3.1E-14 6.7E-19 129.9 16.6 119 302-428 1-120 (163)
118 cd04127 Rab27A Rab27a subfamil 99.6 3.8E-14 8.2E-19 135.5 17.8 119 297-426 4-134 (180)
119 cd04113 Rab4 Rab4 subfamily. 99.6 2.5E-14 5.3E-19 134.2 16.0 116 299-426 2-119 (161)
120 smart00178 SAR Sar1p-like memb 99.6 3.3E-14 7.2E-19 137.7 17.3 115 297-426 17-132 (184)
121 cd04123 Rab21 Rab21 subfamily. 99.6 5.2E-14 1.1E-18 130.9 18.0 116 299-426 2-119 (162)
122 TIGR03598 GTPase_YsxC ribosome 99.6 1.4E-14 3.1E-19 139.5 14.5 121 296-427 17-144 (179)
123 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 3.2E-14 7E-19 136.3 16.8 113 298-426 16-130 (174)
124 cd04120 Rab12 Rab12 subfamily. 99.6 5.1E-14 1.1E-18 139.2 18.5 115 299-426 2-119 (202)
125 COG0218 Predicted GTPase [Gene 99.6 3E-14 6.6E-19 138.6 16.5 124 295-429 22-152 (200)
126 cd01863 Rab18 Rab18 subfamily. 99.6 3.2E-14 6.9E-19 133.2 16.0 116 299-425 2-119 (161)
127 cd00154 Rab Rab family. Rab G 99.6 4.5E-14 9.7E-19 129.8 16.6 116 299-425 2-118 (159)
128 cd04159 Arl10_like Arl10-like 99.6 5.7E-14 1.2E-18 129.4 17.3 112 300-426 2-115 (159)
129 cd04110 Rab35 Rab35 subfamily. 99.6 7E-14 1.5E-18 137.2 18.9 117 296-426 5-124 (199)
130 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.8E-14 3.8E-19 144.8 14.8 115 299-428 1-154 (224)
131 cd00878 Arf_Arl Arf (ADP-ribos 99.6 3.9E-14 8.6E-19 132.3 16.1 113 299-426 1-114 (158)
132 cd04125 RabA_like RabA-like su 99.6 7.1E-14 1.5E-18 135.3 18.4 115 299-426 2-119 (188)
133 cd04150 Arf1_5_like Arf1-Arf5- 99.6 5.9E-14 1.3E-18 132.6 17.4 112 299-426 2-115 (159)
134 cd01860 Rab5_related Rab5-rela 99.6 7.5E-14 1.6E-18 130.8 17.9 117 298-426 2-120 (163)
135 cd01893 Miro1 Miro1 subfamily. 99.6 4.5E-14 9.7E-19 133.9 16.5 115 299-427 2-118 (166)
136 cd04149 Arf6 Arf6 subfamily. 99.6 6.6E-14 1.4E-18 133.7 17.7 114 297-426 9-124 (168)
137 cd04175 Rap1 Rap1 subgroup. T 99.6 5.5E-14 1.2E-18 132.3 17.0 117 298-426 2-120 (164)
138 TIGR02528 EutP ethanolamine ut 99.6 2.1E-14 4.6E-19 132.1 13.7 101 299-426 2-102 (142)
139 cd04155 Arl3 Arl3 subfamily. 99.6 7.6E-14 1.6E-18 132.4 17.9 116 296-427 13-130 (173)
140 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.1E-13 2.3E-18 130.1 18.0 115 299-426 2-121 (164)
141 PTZ00369 Ras-like protein; Pro 99.6 5.5E-14 1.2E-18 136.6 16.4 117 297-426 5-124 (189)
142 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.1E-13 2.3E-18 132.5 17.9 116 299-426 2-120 (170)
143 KOG1145 Mitochondrial translat 99.6 3.6E-14 7.7E-19 153.4 15.9 117 296-428 152-269 (683)
144 smart00177 ARF ARF-like small 99.6 1.2E-13 2.6E-18 132.6 18.1 114 297-426 13-128 (175)
145 CHL00071 tufA elongation facto 99.6 2.2E-14 4.8E-19 156.2 14.4 116 296-427 11-143 (409)
146 PTZ00327 eukaryotic translatio 99.6 3.3E-14 7.1E-19 156.4 15.6 119 296-427 33-186 (460)
147 KOG0465 Mitochondrial elongati 99.6 7.6E-16 1.6E-20 167.8 2.6 246 296-564 38-309 (721)
148 PRK12317 elongation factor 1-a 99.6 1.1E-14 2.3E-19 159.4 11.4 116 296-426 5-153 (425)
149 TIGR01394 TypA_BipA GTP-bindin 99.6 5.8E-14 1.3E-18 159.1 17.6 114 298-427 2-131 (594)
150 cd04116 Rab9 Rab9 subfamily. 99.6 1.5E-13 3.4E-18 130.1 17.5 120 296-425 4-127 (170)
151 cd01883 EF1_alpha Eukaryotic e 99.6 5E-14 1.1E-18 140.7 14.1 115 299-427 1-152 (219)
152 PLN00223 ADP-ribosylation fact 99.6 2.7E-13 5.9E-18 131.3 18.8 114 297-426 17-132 (181)
153 PRK12736 elongation factor Tu; 99.5 7.9E-14 1.7E-18 151.2 16.7 115 296-426 11-142 (394)
154 PLN03110 Rab GTPase; Provision 99.5 2.4E-13 5.2E-18 135.4 18.9 118 296-426 11-131 (216)
155 PLN03118 Rab family protein; P 99.5 2.3E-13 5E-18 134.6 18.6 118 297-426 14-134 (211)
156 cd04176 Rap2 Rap2 subgroup. T 99.5 1.4E-13 2.9E-18 129.4 15.8 117 298-426 2-120 (163)
157 PRK10218 GTP-binding protein; 99.5 8.3E-14 1.8E-18 157.8 17.0 116 296-427 4-135 (607)
158 cd00876 Ras Ras family. The R 99.5 2.2E-13 4.8E-18 126.4 16.9 117 299-426 1-118 (160)
159 TIGR03680 eif2g_arch translati 99.5 6.1E-14 1.3E-18 152.7 15.0 119 296-427 3-149 (406)
160 cd01876 YihA_EngB The YihA (En 99.5 1.1E-13 2.4E-18 128.6 14.6 118 300-428 2-126 (170)
161 TIGR00437 feoB ferrous iron tr 99.5 4.2E-14 9E-19 160.4 13.9 113 304-426 1-113 (591)
162 cd04111 Rab39 Rab39 subfamily. 99.5 3.1E-13 6.6E-18 134.2 18.3 117 298-426 3-123 (211)
163 PTZ00133 ADP-ribosylation fact 99.5 3.8E-13 8.3E-18 130.3 18.5 113 298-426 18-132 (182)
164 cd01899 Ygr210 Ygr210 subfamil 99.5 1.2E-13 2.6E-18 145.4 16.2 88 300-388 1-111 (318)
165 cd04147 Ras_dva Ras-dva subfam 99.5 1.8E-13 4E-18 134.0 16.4 115 299-426 1-118 (198)
166 cd04118 Rab24 Rab24 subfamily. 99.5 2.6E-13 5.7E-18 131.6 17.3 114 299-427 2-120 (193)
167 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 3E-13 6.4E-18 129.7 17.4 115 298-426 3-121 (172)
168 cd04115 Rab33B_Rab33A Rab33B/R 99.5 3E-13 6.6E-18 128.6 17.2 118 297-426 2-123 (170)
169 cd04126 Rab20 Rab20 subfamily. 99.5 3.3E-13 7.1E-18 135.3 17.9 114 299-427 2-115 (220)
170 cd04121 Rab40 Rab40 subfamily. 99.5 6.7E-13 1.4E-17 129.9 19.5 117 296-426 5-124 (189)
171 cd04137 RheB Rheb (Ras Homolog 99.5 4.3E-13 9.4E-18 128.3 17.8 115 298-426 2-120 (180)
172 cd00877 Ran Ran (Ras-related n 99.5 2.6E-13 5.7E-18 129.1 16.2 113 299-425 2-117 (166)
173 cd04132 Rho4_like Rho4-like su 99.5 2.9E-13 6.2E-18 130.5 16.6 116 299-427 2-120 (187)
174 COG4108 PrfC Peptide chain rel 99.5 9.1E-14 2E-18 147.2 13.9 241 298-578 13-291 (528)
175 cd04117 Rab15 Rab15 subfamily. 99.5 3.6E-13 7.7E-18 127.3 16.7 116 299-426 2-119 (161)
176 TIGR00231 small_GTP small GTP- 99.5 1.1E-13 2.4E-18 126.3 12.5 118 298-427 2-123 (161)
177 cd04143 Rhes_like Rhes_like su 99.5 2.5E-13 5.4E-18 138.4 16.3 116 299-426 2-127 (247)
178 PRK04000 translation initiatio 99.5 1.5E-13 3.2E-18 149.9 15.5 119 296-427 8-154 (411)
179 cd04161 Arl2l1_Arl13_like Arl2 99.5 4E-13 8.8E-18 127.9 16.6 113 299-427 1-115 (167)
180 cd01874 Cdc42 Cdc42 subfamily. 99.5 4E-13 8.6E-18 129.3 16.6 115 298-427 2-120 (175)
181 cd01892 Miro2 Miro2 subfamily. 99.5 3.8E-13 8.2E-18 128.5 16.3 116 296-426 3-122 (169)
182 PRK12735 elongation factor Tu; 99.5 1.6E-13 3.6E-18 148.9 15.5 115 296-426 11-142 (396)
183 cd04146 RERG_RasL11_like RERG/ 99.5 2.7E-13 5.8E-18 128.0 14.9 118 299-426 1-120 (165)
184 cd01870 RhoA_like RhoA-like su 99.5 2.1E-13 4.5E-18 129.6 14.0 115 298-427 2-120 (175)
185 cd04128 Spg1 Spg1p. Spg1p (se 99.5 5.5E-13 1.2E-17 129.3 17.0 112 299-426 2-118 (182)
186 PLN03126 Elongation factor Tu; 99.5 2.3E-13 5E-18 150.6 15.7 115 296-426 80-211 (478)
187 cd04177 RSR1 RSR1 subgroup. R 99.5 4.7E-13 1E-17 127.0 15.5 117 298-426 2-120 (168)
188 cd00157 Rho Rho (Ras homology) 99.5 2.4E-13 5.2E-18 128.2 13.3 118 299-429 2-121 (171)
189 PRK00049 elongation factor Tu; 99.5 1.7E-13 3.8E-18 148.6 13.7 115 296-426 11-142 (396)
190 PLN03108 Rab family protein; P 99.5 1.2E-12 2.7E-17 129.6 18.7 118 297-426 6-125 (210)
191 smart00174 RHO Rho (Ras homolo 99.5 4.3E-13 9.4E-18 127.3 14.4 113 300-426 1-116 (174)
192 TIGR00485 EF-Tu translation el 99.5 3.9E-13 8.5E-18 145.8 15.7 116 296-427 11-143 (394)
193 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 3.5E-13 7.7E-18 132.0 13.8 125 299-428 2-132 (196)
194 TIGR01393 lepA GTP-binding pro 99.5 6.9E-13 1.5E-17 150.6 18.0 116 296-426 2-136 (595)
195 PRK05124 cysN sulfate adenylyl 99.5 1.6E-13 3.6E-18 151.9 12.6 115 296-426 26-174 (474)
196 PTZ00141 elongation factor 1- 99.5 3.8E-13 8.3E-18 148.0 15.2 116 296-425 6-158 (446)
197 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 9.2E-13 2E-17 125.2 15.6 113 300-427 2-114 (164)
198 TIGR02034 CysN sulfate adenyly 99.5 2.6E-13 5.6E-18 147.8 13.4 113 299-426 2-147 (406)
199 cd04134 Rho3 Rho3 subfamily. 99.5 6.6E-13 1.4E-17 129.1 14.8 115 299-428 2-120 (189)
200 PLN03127 Elongation factor Tu; 99.5 7.1E-13 1.5E-17 145.8 16.6 115 296-426 60-191 (447)
201 cd01871 Rac1_like Rac1-like su 99.5 3.7E-13 8.1E-18 129.3 12.6 113 298-426 2-119 (174)
202 cd04148 RGK RGK subfamily. Th 99.5 1.6E-12 3.4E-17 130.1 17.6 116 299-427 2-121 (221)
203 TIGR00483 EF-1_alpha translati 99.5 2.1E-13 4.6E-18 149.3 12.2 117 296-426 6-155 (426)
204 cd04135 Tc10 TC10 subfamily. 99.5 4.4E-13 9.5E-18 127.3 12.3 115 299-427 2-119 (174)
205 PLN03071 GTP-binding nuclear p 99.5 1.7E-12 3.6E-17 129.8 16.8 115 296-425 12-130 (219)
206 PRK05433 GTP-binding protein L 99.5 1.3E-12 2.8E-17 148.5 18.1 116 296-426 6-140 (600)
207 PRK05506 bifunctional sulfate 99.5 4.9E-13 1.1E-17 153.3 13.9 116 296-426 23-171 (632)
208 cd01875 RhoG RhoG subfamily. 99.4 2.9E-12 6.2E-17 125.0 16.9 113 298-426 4-121 (191)
209 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 4.9E-12 1.1E-16 127.8 19.0 115 297-426 13-131 (232)
210 PRK09602 translation-associate 99.4 2.7E-12 5.9E-17 139.0 17.4 87 298-387 2-113 (396)
211 cd04130 Wrch_1 Wrch-1 subfamil 99.4 2.9E-12 6.3E-17 122.2 14.8 114 299-427 2-119 (173)
212 cd04131 Rnd Rnd subfamily. Th 99.4 4.2E-12 9.1E-17 122.8 16.0 114 298-426 2-119 (178)
213 KOG0084 GTPase Rab1/YPT1, smal 99.4 4.1E-12 8.9E-17 122.5 15.0 121 296-429 8-131 (205)
214 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 7E-12 1.5E-16 121.9 16.5 115 297-426 5-123 (182)
215 PRK14845 translation initiatio 99.4 2.9E-12 6.4E-17 151.6 16.3 114 295-428 463-594 (1049)
216 PLN00043 elongation factor 1-a 99.4 3.2E-12 7E-17 140.7 14.9 116 296-425 6-158 (447)
217 KOG0092 GTPase Rab5/YPT51 and 99.4 2E-12 4.3E-17 124.2 11.3 117 297-427 5-125 (200)
218 cd00882 Ras_like_GTPase Ras-li 99.4 8.6E-12 1.9E-16 112.0 14.9 116 302-428 1-118 (157)
219 cd04129 Rho2 Rho2 subfamily. 99.4 3.1E-12 6.6E-17 124.1 12.8 115 298-426 2-119 (187)
220 cd04103 Centaurin_gamma Centau 99.4 9E-12 2E-16 118.0 15.6 109 299-425 2-112 (158)
221 cd04133 Rop_like Rop subfamily 99.4 7E-12 1.5E-16 121.3 15.1 113 298-426 2-119 (176)
222 PF10662 PduV-EutP: Ethanolami 99.4 2E-12 4.2E-17 120.6 9.9 100 298-426 2-103 (143)
223 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 1.1E-11 2.4E-16 124.4 15.9 115 298-427 2-120 (222)
224 cd04104 p47_IIGP_like p47 (47- 99.4 8.6E-12 1.9E-16 122.5 14.5 118 298-427 2-122 (197)
225 PF00025 Arf: ADP-ribosylation 99.4 1E-11 2.3E-16 119.6 14.2 117 296-427 13-130 (175)
226 smart00176 RAN Ran (Ras-relate 99.4 1.8E-11 3.8E-16 121.0 16.0 108 303-425 1-112 (200)
227 COG3596 Predicted GTPase [Gene 99.4 8.4E-12 1.8E-16 126.4 13.6 126 296-427 38-163 (296)
228 cd04105 SR_beta Signal recogni 99.3 1.5E-11 3.3E-16 121.5 14.3 120 298-429 1-126 (203)
229 cd01885 EF2 EF2 (for archaea a 99.3 7.4E-12 1.6E-16 125.7 11.7 114 298-426 1-139 (222)
230 cd01873 RhoBTB RhoBTB subfamil 99.3 2.3E-11 5E-16 119.6 14.9 113 298-426 3-134 (195)
231 KOG0073 GTP-binding ADP-ribosy 99.3 4.9E-11 1.1E-15 111.9 15.7 115 298-427 17-132 (185)
232 cd04167 Snu114p Snu114p subfam 99.3 2.3E-11 5E-16 120.8 12.3 114 299-427 2-138 (213)
233 KOG0098 GTPase Rab2, small G p 99.3 8.2E-11 1.8E-15 112.5 15.3 120 296-428 5-127 (216)
234 KOG1490 GTP-binding protein CR 99.3 2.4E-11 5.1E-16 130.8 13.0 130 293-430 164-299 (620)
235 KOG0078 GTP-binding protein SE 99.3 1.4E-10 3E-15 113.3 17.2 118 296-426 11-131 (207)
236 PF00071 Ras: Ras family; Int 99.3 9.2E-11 2E-15 109.9 15.1 116 299-426 1-118 (162)
237 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 1.4E-10 3E-15 111.8 16.0 121 297-430 22-146 (221)
238 KOG0462 Elongation factor-type 99.3 1.4E-11 2.9E-16 133.8 10.0 120 296-430 59-195 (650)
239 PTZ00258 GTP-binding protein; 99.3 3.9E-11 8.3E-16 129.3 12.8 89 296-387 20-126 (390)
240 cd01900 YchF YchF subfamily. 99.3 3.3E-11 7.2E-16 124.4 11.7 85 300-387 1-103 (274)
241 cd01853 Toc34_like Toc34-like 99.2 2E-10 4.3E-15 117.3 16.7 132 296-430 30-167 (249)
242 KOG0464 Elongation factor G [T 99.2 7.5E-13 1.6E-17 138.8 -1.6 127 297-439 37-182 (753)
243 PTZ00132 GTP-binding nuclear p 99.2 5.4E-10 1.2E-14 110.8 18.1 115 296-425 8-126 (215)
244 PF08477 Miro: Miro-like prote 99.2 2.4E-11 5.2E-16 108.4 7.5 116 299-423 1-119 (119)
245 PRK07560 elongation factor EF- 99.2 5.6E-11 1.2E-15 138.4 12.0 118 296-428 19-155 (731)
246 KOG0394 Ras-related GTPase [Ge 99.2 8.1E-11 1.7E-15 112.4 10.6 121 296-428 8-134 (210)
247 TIGR02836 spore_IV_A stage IV 99.2 1.7E-10 3.7E-15 123.2 14.0 124 296-425 16-193 (492)
248 cd04102 RabL3 RabL3 (Rab-like3 99.2 2E-10 4.4E-15 113.7 13.4 118 299-427 2-144 (202)
249 PRK09601 GTP-binding protein Y 99.2 1.8E-10 3.9E-15 122.9 13.0 89 298-387 3-107 (364)
250 PRK09435 membrane ATPase/prote 99.2 2.6E-10 5.6E-15 120.7 13.8 28 538-565 235-262 (332)
251 TIGR00991 3a0901s02IAP34 GTP-b 99.2 4.7E-10 1E-14 117.1 15.2 130 296-430 37-171 (313)
252 smart00053 DYNc Dynamin, GTPas 99.2 5.2E-10 1.1E-14 113.5 14.9 127 296-428 25-208 (240)
253 PLN00116 translation elongatio 99.2 1.4E-10 3.1E-15 136.8 12.5 115 296-425 18-163 (843)
254 PF00350 Dynamin_N: Dynamin fa 99.2 2.1E-10 4.6E-15 108.6 11.2 113 300-422 1-168 (168)
255 cd01882 BMS1 Bms1. Bms1 is an 99.2 5.9E-10 1.3E-14 112.0 15.0 109 296-427 38-148 (225)
256 KOG0087 GTPase Rab11/YPT3, sma 99.2 1.3E-10 2.7E-15 113.4 9.4 118 296-426 13-133 (222)
257 PTZ00416 elongation factor 2; 99.1 2.1E-10 4.5E-15 135.3 12.6 115 296-425 18-157 (836)
258 PLN00023 GTP-binding protein; 99.1 3.8E-10 8.3E-15 118.5 13.1 121 296-427 20-166 (334)
259 COG5256 TEF1 Translation elong 99.1 5.9E-10 1.3E-14 118.5 13.2 117 296-426 6-159 (428)
260 COG3276 SelB Selenocysteine-sp 99.1 5.3E-10 1.1E-14 119.6 13.0 115 299-428 2-119 (447)
261 COG0481 LepA Membrane GTPase L 99.1 1.4E-10 3.1E-15 124.2 8.4 119 296-430 8-146 (603)
262 COG5257 GCD11 Translation init 99.1 2.4E-10 5.3E-15 117.5 9.1 120 296-430 9-158 (415)
263 COG2229 Predicted GTPase [Gene 99.1 3.5E-09 7.6E-14 101.6 16.2 119 296-429 9-138 (187)
264 KOG0095 GTPase Rab30, small G 99.1 1.9E-10 4.1E-15 106.2 7.2 120 297-429 7-129 (213)
265 COG1217 TypA Predicted membran 99.1 6.7E-10 1.5E-14 118.9 11.8 119 296-430 4-138 (603)
266 cd01850 CDC_Septin CDC/Septin. 99.1 1.4E-09 3.1E-14 112.7 13.8 125 297-429 4-160 (276)
267 COG1100 GTPase SAR1 and relate 99.1 1.6E-09 3.4E-14 107.0 13.3 119 298-429 6-128 (219)
268 PF09439 SRPRB: Signal recogni 99.1 3.5E-10 7.6E-15 109.8 8.4 122 298-429 4-129 (181)
269 KOG0086 GTPase Rab4, small G p 99.1 1.2E-09 2.7E-14 101.2 11.4 121 297-430 9-132 (214)
270 COG0012 Predicted GTPase, prob 99.1 3.6E-10 7.8E-15 119.3 8.5 88 298-388 3-109 (372)
271 TIGR00750 lao LAO/AO transport 99.0 6.6E-09 1.4E-13 108.9 16.7 27 539-565 214-240 (300)
272 TIGR00490 aEF-2 translation el 99.0 7E-10 1.5E-14 129.1 10.3 119 296-429 18-155 (720)
273 PRK13768 GTPase; Provisional 99.0 2.1E-09 4.6E-14 110.0 12.6 79 345-429 97-179 (253)
274 KOG0080 GTPase Rab18, small G 99.0 1.4E-09 3E-14 101.8 9.9 119 297-427 11-132 (209)
275 KOG0090 Signal recognition par 99.0 1.1E-09 2.4E-14 107.1 9.5 124 297-430 38-163 (238)
276 KOG1486 GTP-binding protein DR 99.0 5.8E-10 1.3E-14 111.3 7.6 123 294-420 59-181 (364)
277 KOG0088 GTPase Rab21, small G 99.0 7.4E-10 1.6E-14 103.3 7.8 117 297-427 13-133 (218)
278 COG1703 ArgK Putative periplas 99.0 1.6E-09 3.5E-14 111.2 10.9 59 256-319 14-73 (323)
279 COG0050 TufB GTPases - transla 99.0 3.3E-09 7.2E-14 108.1 12.3 120 296-430 11-146 (394)
280 PF04548 AIG1: AIG1 family; I 99.0 5.2E-09 1.1E-13 104.2 13.3 127 299-429 2-133 (212)
281 PF03029 ATP_bind_1: Conserved 99.0 6E-10 1.3E-14 113.0 6.0 76 346-428 92-172 (238)
282 KOG0461 Selenocysteine-specifi 99.0 3.9E-09 8.5E-14 109.3 11.5 118 298-430 8-140 (522)
283 TIGR00073 hypB hydrogenase acc 98.9 1.4E-08 3E-13 100.6 14.1 26 295-320 20-45 (207)
284 TIGR00092 GTP-binding protein 98.9 5.6E-09 1.2E-13 111.6 11.5 88 298-388 3-109 (368)
285 KOG0076 GTP-binding ADP-ribosy 98.9 4.5E-09 9.8E-14 99.7 9.4 119 297-428 17-142 (197)
286 PF03308 ArgK: ArgK protein; 98.9 5E-10 1.1E-14 113.4 2.8 27 539-565 206-232 (266)
287 TIGR00993 3a0901s04IAP86 chlor 98.9 2E-08 4.4E-13 112.9 14.9 128 297-427 118-251 (763)
288 KOG1491 Predicted GTP-binding 98.9 4.6E-09 9.9E-14 109.0 8.1 90 296-388 19-126 (391)
289 KOG0079 GTP-binding protein H- 98.8 1.6E-08 3.5E-13 93.6 9.9 116 298-428 9-128 (198)
290 COG2895 CysN GTPases - Sulfate 98.8 8E-09 1.7E-13 107.7 8.5 129 296-439 5-166 (431)
291 KOG0070 GTP-binding ADP-ribosy 98.8 1.9E-08 4.1E-13 96.6 10.2 116 297-428 17-134 (181)
292 KOG0093 GTPase Rab3, small G p 98.8 3.8E-08 8.3E-13 91.0 11.7 120 297-428 21-142 (193)
293 COG4917 EutP Ethanolamine util 98.8 2.7E-08 5.9E-13 89.9 10.1 104 298-427 2-105 (148)
294 KOG2486 Predicted GTPase [Gene 98.8 3.1E-08 6.8E-13 100.6 10.2 121 296-427 135-263 (320)
295 KOG0075 GTP-binding ADP-ribosy 98.8 2.7E-08 5.8E-13 92.1 8.6 115 298-427 21-137 (186)
296 PF05049 IIGP: Interferon-indu 98.8 8.5E-08 1.8E-12 102.7 13.8 113 298-424 36-153 (376)
297 PRK10463 hydrogenase nickel in 98.8 2.1E-07 4.6E-12 96.6 15.9 25 296-320 103-127 (290)
298 TIGR00101 ureG urease accessor 98.7 1.3E-07 2.9E-12 93.4 13.3 26 537-562 170-195 (199)
299 KOG0091 GTPase Rab39, small G 98.7 2.6E-08 5.5E-13 93.7 7.6 121 298-430 9-134 (213)
300 PF04670 Gtr1_RagA: Gtr1/RagA 98.7 4.1E-08 8.9E-13 99.2 8.6 127 299-430 1-129 (232)
301 KOG0083 GTPase Rab26/Rab37, sm 98.7 4.5E-08 9.8E-13 89.1 6.5 112 302-427 2-118 (192)
302 KOG0395 Ras-related GTPase [Ge 98.6 1.3E-07 2.9E-12 93.2 9.4 118 297-427 3-123 (196)
303 KOG0077 Vesicle coat complex C 98.6 1.7E-07 3.6E-12 88.6 9.0 117 297-428 20-137 (193)
304 KOG0458 Elongation factor 1 al 98.6 5.3E-08 1.1E-12 107.2 6.3 130 296-439 176-342 (603)
305 PTZ00099 rab6; Provisional 98.6 4.5E-07 9.7E-12 87.8 12.1 70 345-426 29-99 (176)
306 COG5258 GTPBP1 GTPase [General 98.6 1E-07 2.3E-12 100.3 7.3 119 296-429 116-272 (527)
307 KOG0460 Mitochondrial translat 98.6 3.5E-07 7.7E-12 95.1 11.0 119 296-429 53-187 (449)
308 KOG0468 U5 snRNP-specific prot 98.6 1.7E-07 3.8E-12 103.9 9.1 116 296-426 127-263 (971)
309 KOG0097 GTPase Rab14, small G 98.5 4.9E-07 1.1E-11 83.1 10.1 122 296-430 10-134 (215)
310 cd03112 CobW_like The function 98.5 5.5E-07 1.2E-11 85.7 8.5 117 298-424 1-158 (158)
311 cd01858 NGP_1 NGP-1. Autoanti 98.4 5.6E-07 1.2E-11 85.0 6.7 54 298-355 103-157 (157)
312 cd04178 Nucleostemin_like Nucl 98.4 8.5E-07 1.8E-11 85.8 8.0 56 296-355 116-172 (172)
313 KOG3883 Ras family small GTPas 98.4 3.7E-06 8E-11 78.6 11.7 124 297-429 9-135 (198)
314 KOG0081 GTPase Rab27, small G 98.4 1.2E-06 2.6E-11 82.1 8.6 118 299-428 11-140 (219)
315 TIGR03596 GTPase_YlqF ribosome 98.3 2.2E-06 4.8E-11 88.8 10.4 59 296-358 117-176 (276)
316 KOG0071 GTP-binding ADP-ribosy 98.3 3.9E-06 8.4E-11 77.4 10.6 115 298-428 18-134 (180)
317 PF00735 Septin: Septin; Inte 98.3 2.9E-06 6.2E-11 88.3 11.1 125 298-430 5-160 (281)
318 KOG0074 GTP-binding ADP-ribosy 98.3 2.4E-06 5.1E-11 78.9 8.9 118 297-428 17-135 (185)
319 cd01851 GBP Guanylate-binding 98.3 9E-06 1.9E-10 81.9 13.9 92 295-388 5-103 (224)
320 PRK09563 rbgA GTPase YlqF; Rev 98.3 3.6E-06 7.8E-11 87.8 11.4 59 296-358 120-179 (287)
321 KOG4252 GTP-binding protein [S 98.3 5.2E-07 1.1E-11 86.1 4.1 121 297-430 20-142 (246)
322 cd01849 YlqF_related_GTPase Yl 98.3 3.6E-06 7.7E-11 79.4 9.3 56 296-355 99-155 (155)
323 COG0378 HypB Ni2+-binding GTPa 98.3 5.5E-06 1.2E-10 80.8 10.6 27 536-562 174-200 (202)
324 KOG0072 GTP-binding ADP-ribosy 98.3 1.1E-06 2.3E-11 81.4 5.2 115 298-427 19-134 (182)
325 COG5192 BMS1 GTP-binding prote 98.2 2.5E-06 5.5E-11 93.2 8.3 145 295-463 67-214 (1077)
326 PF03193 DUF258: Protein of un 98.2 1.3E-06 2.7E-11 83.5 4.9 58 298-357 36-99 (161)
327 cd01855 YqeH YqeH. YqeH is an 98.2 1.2E-06 2.5E-11 85.4 4.6 54 298-355 128-190 (190)
328 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 2.8E-06 6.1E-11 78.9 6.0 54 299-356 85-139 (141)
329 cd01856 YlqF YlqF. Proteins o 98.1 9.5E-06 2.1E-10 77.8 9.2 55 297-355 115-170 (171)
330 KOG0467 Translation elongation 98.1 6E-06 1.3E-10 93.4 8.1 117 295-426 7-138 (887)
331 COG1161 Predicted GTPases [Gen 98.1 7.7E-06 1.7E-10 86.8 8.2 57 297-357 132-189 (322)
332 KOG1954 Endocytosis/signaling 98.1 3.7E-05 7.9E-10 81.1 12.8 130 295-430 56-229 (532)
333 KOG0410 Predicted GTP binding 98.1 7.7E-06 1.7E-10 85.0 7.6 100 160-259 15-127 (410)
334 COG0523 Putative GTPases (G3E 98.0 1.1E-05 2.4E-10 85.4 8.0 121 297-429 1-162 (323)
335 PRK12288 GTPase RsgA; Reviewed 98.0 8.1E-06 1.8E-10 87.4 7.0 57 299-357 207-269 (347)
336 KOG1707 Predicted Ras related/ 98.0 2.7E-05 5.9E-10 86.3 10.9 121 297-430 9-133 (625)
337 TIGR00157 ribosome small subun 98.0 8.8E-06 1.9E-10 83.0 6.7 54 299-357 122-183 (245)
338 cd01859 MJ1464 MJ1464. This f 98.0 1.6E-05 3.5E-10 74.7 8.1 49 371-426 6-55 (156)
339 TIGR03348 VI_IcmF type VI secr 98.0 3.1E-05 6.7E-10 95.0 12.0 127 296-428 110-259 (1169)
340 PF00448 SRP54: SRP54-type pro 98.0 4.5E-05 9.8E-10 75.3 11.0 119 298-427 2-155 (196)
341 PRK12289 GTPase RsgA; Reviewed 98.0 7.3E-06 1.6E-10 87.9 5.7 55 299-357 174-236 (352)
342 TIGR00064 ftsY signal recognit 98.0 5.9E-05 1.3E-09 78.2 11.7 121 296-426 71-231 (272)
343 KOG1143 Predicted translation 98.0 9.4E-06 2E-10 85.4 5.8 117 298-429 168-320 (591)
344 PF02492 cobW: CobW/HypB/UreG, 98.0 6.3E-06 1.4E-10 79.8 3.9 120 298-428 1-157 (178)
345 cd01858 NGP_1 NGP-1. Autoanti 97.9 2.3E-05 4.9E-10 74.0 7.5 52 371-427 3-54 (157)
346 COG1162 Predicted GTPases [Gen 97.9 1.8E-05 3.9E-10 82.3 7.0 60 298-357 165-228 (301)
347 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 1.2E-05 2.5E-10 82.2 5.5 100 298-413 31-135 (254)
348 TIGR01425 SRP54_euk signal rec 97.9 8.2E-05 1.8E-09 81.5 12.2 119 297-426 100-253 (429)
349 KOG1487 GTP-binding protein DR 97.9 7.9E-06 1.7E-10 82.5 3.7 124 296-424 58-181 (358)
350 PRK11537 putative GTP-binding 97.9 4.3E-05 9.3E-10 81.0 9.4 123 296-428 3-166 (318)
351 PRK10416 signal recognition pa 97.9 9.7E-05 2.1E-09 78.3 12.1 120 296-425 113-272 (318)
352 cd01854 YjeQ_engC YjeQ/EngC. 97.9 2.8E-05 6.1E-10 81.2 7.6 58 298-357 162-225 (287)
353 PRK14722 flhF flagellar biosyn 97.9 4.8E-05 1E-09 82.0 9.3 127 298-427 138-296 (374)
354 KOG3886 GTP-binding protein [S 97.9 2.3E-05 5.1E-10 78.0 6.2 127 298-430 5-134 (295)
355 PRK00098 GTPase RsgA; Reviewed 97.9 4.2E-05 9.1E-10 80.3 8.4 57 298-357 165-228 (298)
356 TIGR03597 GTPase_YqeH ribosome 97.8 1.8E-05 3.9E-10 85.3 5.4 56 298-357 155-216 (360)
357 PRK11889 flhF flagellar biosyn 97.8 4.1E-05 9E-10 82.7 7.8 119 297-426 241-391 (436)
358 KOG1424 Predicted GTP-binding 97.8 1.9E-05 4E-10 86.5 4.3 59 296-358 313-372 (562)
359 KOG0393 Ras-related small GTPa 97.8 2.8E-05 6.1E-10 76.4 5.2 117 297-426 4-123 (198)
360 TIGR03596 GTPase_YlqF ribosome 97.8 8.4E-05 1.8E-09 77.1 8.8 58 360-426 5-62 (276)
361 TIGR02475 CobW cobalamin biosy 97.8 6.5E-05 1.4E-09 80.4 8.0 127 296-430 3-191 (341)
362 cd01856 YlqF YlqF. Proteins o 97.7 0.00011 2.4E-09 70.4 8.7 58 360-426 3-60 (171)
363 PRK14974 cell division protein 97.7 0.00018 3.8E-09 76.8 11.0 72 344-426 222-293 (336)
364 PRK13796 GTPase YqeH; Provisio 97.7 3.5E-05 7.5E-10 83.2 5.7 56 298-357 161-222 (365)
365 cd01859 MJ1464 MJ1464. This f 97.7 6.8E-05 1.5E-09 70.5 7.0 55 297-355 101-156 (156)
366 PRK09563 rbgA GTPase YlqF; Rev 97.7 8.7E-05 1.9E-09 77.5 8.5 58 360-426 8-65 (287)
367 PRK14721 flhF flagellar biosyn 97.7 0.00012 2.5E-09 80.2 9.7 120 297-427 191-341 (420)
368 COG1120 FepC ABC-type cobalami 97.7 1.4E-05 3.1E-10 81.8 2.4 24 298-321 29-52 (258)
369 KOG0448 Mitofusin 1 GTPase, in 97.7 0.00047 1E-08 77.9 14.1 121 297-429 109-278 (749)
370 cd01855 YqeH YqeH. YqeH is an 97.7 0.00015 3.3E-09 70.5 9.2 25 539-563 101-125 (190)
371 cd03115 SRP The signal recogni 97.7 0.00028 6E-09 67.5 10.8 74 344-428 82-155 (173)
372 KOG0466 Translation initiation 97.7 4.9E-05 1.1E-09 78.4 5.3 120 297-430 38-197 (466)
373 PRK12727 flagellar biosynthesi 97.7 0.00019 4.2E-09 80.2 10.4 118 297-426 350-498 (559)
374 COG5019 CDC3 Septin family pro 97.7 0.00038 8.2E-09 73.9 12.0 126 297-430 23-180 (373)
375 COG1116 TauB ABC-type nitrate/ 97.7 0.00011 2.3E-09 74.5 7.3 37 298-346 30-66 (248)
376 COG1419 FlhF Flagellar GTP-bin 97.6 0.0003 6.4E-09 76.0 10.3 119 297-426 203-352 (407)
377 cd03114 ArgK-like The function 97.6 0.00052 1.1E-08 64.7 10.8 20 300-319 2-21 (148)
378 cd01849 YlqF_related_GTPase Yl 97.6 0.00014 2.9E-09 68.6 6.6 43 378-427 1-44 (155)
379 KOG2655 Septin family protein 97.6 0.00036 7.7E-09 74.5 10.4 126 297-430 21-176 (366)
380 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00094 2E-08 62.4 11.7 90 298-406 27-117 (144)
381 KOG2743 Cobalamin synthesis pr 97.6 8E-05 1.7E-09 76.8 4.7 129 294-430 54-229 (391)
382 PRK05703 flhF flagellar biosyn 97.5 0.00058 1.3E-08 75.2 11.7 119 298-426 222-371 (424)
383 PRK12724 flagellar biosynthesi 97.5 0.0003 6.5E-09 76.8 9.0 119 298-426 224-373 (432)
384 PRK12289 GTPase RsgA; Reviewed 97.5 0.00025 5.4E-09 76.2 7.9 49 373-427 86-135 (352)
385 cd03216 ABC_Carb_Monos_I This 97.5 0.0012 2.7E-08 62.8 11.8 24 298-321 27-50 (163)
386 PRK12726 flagellar biosynthesi 97.5 0.00021 4.6E-09 77.0 7.0 120 296-426 205-356 (407)
387 TIGR00157 ribosome small subun 97.5 0.00045 9.7E-09 70.6 8.8 49 373-427 33-82 (245)
388 KOG0463 GTP-binding protein GP 97.4 0.00046 1E-08 73.0 8.7 70 346-430 220-291 (641)
389 PRK12723 flagellar biosynthesi 97.4 0.00039 8.4E-09 75.6 8.4 122 296-427 173-327 (388)
390 COG3840 ThiQ ABC-type thiamine 97.4 0.00024 5.1E-09 69.0 5.7 37 298-346 26-62 (231)
391 PRK00771 signal recognition pa 97.4 0.00045 9.7E-09 76.2 8.5 120 296-426 94-246 (437)
392 PRK14723 flhF flagellar biosyn 97.4 0.00059 1.3E-08 79.4 9.8 121 298-427 186-338 (767)
393 COG0552 FtsY Signal recognitio 97.4 0.0013 2.8E-08 69.3 11.4 120 296-428 138-299 (340)
394 PF09547 Spore_IV_A: Stage IV 97.4 0.0024 5.1E-08 69.3 13.2 41 537-585 209-249 (492)
395 PRK06731 flhF flagellar biosyn 97.3 0.0005 1.1E-08 71.2 7.2 119 297-426 75-225 (270)
396 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0029 6.4E-08 61.5 12.1 36 298-345 26-61 (177)
397 COG1122 CbiO ABC-type cobalt t 97.3 0.00035 7.5E-09 71.0 5.6 93 298-409 31-130 (235)
398 KOG0447 Dynamin-like GTP bindi 97.3 0.013 2.8E-07 64.9 17.6 129 295-428 306-495 (980)
399 COG3523 IcmF Type VI protein s 97.3 0.0006 1.3E-08 82.4 8.0 132 296-428 124-272 (1188)
400 PRK00098 GTPase RsgA; Reviewed 97.3 0.00045 9.8E-09 72.5 6.2 47 374-426 78-125 (298)
401 KOG1547 Septin CDC10 and relat 97.2 0.0017 3.8E-08 65.3 9.6 60 298-358 47-117 (336)
402 PRK06995 flhF flagellar biosyn 97.2 0.00084 1.8E-08 74.8 8.2 23 298-320 257-279 (484)
403 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00079 1.7E-08 70.3 7.0 48 374-427 76-124 (287)
404 COG4559 ABC-type hemin transpo 97.2 0.00045 9.7E-09 68.6 4.7 24 298-321 28-51 (259)
405 COG0411 LivG ABC-type branched 97.2 0.00013 2.8E-09 73.7 0.8 38 298-347 31-68 (250)
406 COG1136 SalX ABC-type antimicr 97.2 0.00047 1E-08 69.4 4.8 37 298-346 32-68 (226)
407 PRK01889 GTPase RsgA; Reviewed 97.1 0.00041 8.8E-09 74.7 4.4 24 298-321 196-219 (356)
408 TIGR00959 ffh signal recogniti 97.1 0.0024 5.1E-08 70.4 10.3 71 344-425 182-252 (428)
409 COG0410 LivF ABC-type branched 97.1 0.00061 1.3E-08 68.4 5.0 24 298-321 30-53 (237)
410 PF00005 ABC_tran: ABC transpo 97.1 0.00049 1.1E-08 62.9 4.0 24 298-321 12-35 (137)
411 KOG4181 Uncharacterized conser 97.1 0.0051 1.1E-07 64.8 11.7 26 296-321 187-212 (491)
412 COG3839 MalK ABC-type sugar tr 97.1 0.00057 1.2E-08 72.7 4.8 24 298-321 30-53 (338)
413 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.00081 1.8E-08 62.4 5.3 56 368-428 3-58 (141)
414 COG1135 AbcC ABC-type metal io 97.1 0.00059 1.3E-08 71.2 4.7 92 298-409 33-133 (339)
415 cd03223 ABCD_peroxisomal_ALDP 97.1 0.011 2.3E-07 56.6 13.1 24 298-321 28-51 (166)
416 cd03261 ABC_Org_Solvent_Resist 97.1 0.00067 1.5E-08 68.2 5.1 24 298-321 27-50 (235)
417 TIGR01166 cbiO cobalt transpor 97.1 0.00069 1.5E-08 65.9 5.0 24 298-321 19-42 (190)
418 KOG1707 Predicted Ras related/ 97.1 0.0031 6.6E-08 70.4 10.5 118 295-428 423-542 (625)
419 TIGR00960 3a0501s02 Type II (G 97.1 0.00067 1.4E-08 67.3 4.9 24 298-321 30-53 (216)
420 PRK10867 signal recognition pa 97.1 0.0028 6.1E-08 69.9 10.1 71 344-425 183-253 (433)
421 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00067 1.5E-08 67.3 4.9 24 298-321 31-54 (218)
422 KOG0469 Elongation factor 2 [T 97.0 0.00096 2.1E-08 72.9 6.2 115 296-425 18-163 (842)
423 COG3640 CooC CO dehydrogenase 97.0 0.0018 3.9E-08 65.2 7.6 45 375-425 154-198 (255)
424 smart00275 G_alpha G protein a 97.0 0.0055 1.2E-07 65.7 11.9 74 345-427 184-266 (342)
425 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00075 1.6E-08 66.6 4.9 24 298-321 28-51 (211)
426 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00078 1.7E-08 66.3 4.9 24 298-321 27-50 (205)
427 KOG0096 GTPase Ran/TC4/GSP1 (n 97.0 0.0011 2.4E-08 64.4 5.6 118 297-428 10-130 (216)
428 cd03269 ABC_putative_ATPase Th 97.0 0.00087 1.9E-08 66.2 4.9 24 298-321 27-50 (210)
429 KOG2423 Nucleolar GTPase [Gene 97.0 0.0012 2.7E-08 70.4 6.2 58 297-358 307-365 (572)
430 KOG2485 Conserved ATP/GTP bind 97.0 0.0011 2.4E-08 69.1 5.7 62 296-358 142-209 (335)
431 cd03259 ABC_Carb_Solutes_like 97.0 0.00093 2E-08 66.1 5.0 24 298-321 27-50 (213)
432 TIGR02673 FtsE cell division A 97.0 0.00094 2E-08 66.1 4.9 24 298-321 29-52 (214)
433 cd03292 ABC_FtsE_transporter F 97.0 0.001 2.2E-08 65.8 5.1 24 298-321 28-51 (214)
434 cd03265 ABC_DrrA DrrA is the A 97.0 0.00097 2.1E-08 66.4 5.1 24 298-321 27-50 (220)
435 PRK12288 GTPase RsgA; Reviewed 96.9 0.0025 5.4E-08 68.5 8.4 48 374-427 118-165 (347)
436 cd03263 ABC_subfamily_A The AB 96.9 0.00097 2.1E-08 66.2 4.9 24 298-321 29-52 (220)
437 TIGR02211 LolD_lipo_ex lipopro 96.9 0.00096 2.1E-08 66.3 4.9 24 298-321 32-55 (221)
438 COG1124 DppF ABC-type dipeptid 96.9 0.0019 4.1E-08 65.4 6.8 24 298-321 34-57 (252)
439 cd03262 ABC_HisP_GlnQ_permease 96.9 0.00096 2.1E-08 65.9 4.8 24 298-321 27-50 (213)
440 cd03258 ABC_MetN_methionine_tr 96.9 0.00097 2.1E-08 66.9 4.9 24 298-321 32-55 (233)
441 TIGR02315 ABC_phnC phosphonate 96.9 0.00095 2.1E-08 67.4 4.9 24 298-321 29-52 (243)
442 TIGR03608 L_ocin_972_ABC putat 96.9 0.0011 2.3E-08 65.2 5.1 24 298-321 25-48 (206)
443 cd03264 ABC_drug_resistance_li 96.9 0.00092 2E-08 66.0 4.6 23 299-321 27-49 (211)
444 COG1126 GlnQ ABC-type polar am 96.9 0.001 2.2E-08 66.2 4.9 90 298-408 29-127 (240)
445 cd03257 ABC_NikE_OppD_transpor 96.9 0.00098 2.1E-08 66.5 4.8 24 298-321 32-55 (228)
446 cd03224 ABC_TM1139_LivF_branch 96.9 0.00098 2.1E-08 66.3 4.8 24 298-321 27-50 (222)
447 cd03293 ABC_NrtD_SsuB_transpor 96.9 0.0011 2.3E-08 66.1 5.0 24 298-321 31-54 (220)
448 cd03218 ABC_YhbG The ABC trans 96.9 0.001 2.2E-08 66.7 4.9 24 298-321 27-50 (232)
449 PRK11629 lolD lipoprotein tran 96.9 0.0011 2.4E-08 66.7 5.1 24 298-321 36-59 (233)
450 TIGR01189 ccmA heme ABC export 96.9 0.0011 2.5E-08 64.8 5.1 24 298-321 27-50 (198)
451 cd03229 ABC_Class3 This class 96.9 0.0012 2.6E-08 63.7 5.1 24 298-321 27-50 (178)
452 PRK13541 cytochrome c biogenes 96.9 0.0011 2.4E-08 64.9 4.9 24 298-321 27-50 (195)
453 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.011 2.4E-07 55.5 11.6 24 298-321 26-49 (157)
454 cd03266 ABC_NatA_sodium_export 96.9 0.0011 2.4E-08 65.7 4.9 24 298-321 32-55 (218)
455 PRK10584 putative ABC transpor 96.9 0.0012 2.6E-08 66.1 5.0 24 298-321 37-60 (228)
456 cd03256 ABC_PhnC_transporter A 96.9 0.0011 2.4E-08 66.7 4.9 24 298-321 28-51 (241)
457 cd03296 ABC_CysA_sulfate_impor 96.9 0.0012 2.6E-08 66.6 5.0 24 298-321 29-52 (239)
458 PRK10908 cell division protein 96.9 0.0013 2.8E-08 65.6 5.2 24 298-321 29-52 (222)
459 cd03268 ABC_BcrA_bacitracin_re 96.9 0.0013 2.8E-08 64.8 5.1 24 298-321 27-50 (208)
460 PRK11248 tauB taurine transpor 96.9 0.0011 2.5E-08 67.8 4.9 24 298-321 28-51 (255)
461 TIGR03864 PQQ_ABC_ATP ABC tran 96.9 0.0013 2.8E-08 66.3 5.2 24 298-321 28-51 (236)
462 PRK13540 cytochrome c biogenes 96.9 0.0013 2.8E-08 64.6 5.0 24 298-321 28-51 (200)
463 cd03215 ABC_Carb_Monos_II This 96.9 0.0013 2.7E-08 63.8 4.8 24 298-321 27-50 (182)
464 TIGR01188 drrA daunorubicin re 96.8 0.0013 2.8E-08 69.1 5.1 24 298-321 20-43 (302)
465 KOG2749 mRNA cleavage and poly 96.8 0.0044 9.6E-08 65.6 8.9 47 297-343 103-150 (415)
466 cd03219 ABC_Mj1267_LivG_branch 96.8 0.0012 2.6E-08 66.3 4.7 24 298-321 27-50 (236)
467 cd03301 ABC_MalK_N The N-termi 96.8 0.0014 3E-08 64.8 5.1 24 298-321 27-50 (213)
468 cd03235 ABC_Metallic_Cations A 96.8 0.0011 2.4E-08 65.6 4.3 24 298-321 26-49 (213)
469 COG1131 CcmA ABC-type multidru 96.8 0.0013 2.8E-08 69.0 4.9 24 298-321 32-55 (293)
470 PRK13538 cytochrome c biogenes 96.8 0.0014 3E-08 64.6 4.9 24 298-321 28-51 (204)
471 PRK11124 artP arginine transpo 96.8 0.0014 3.1E-08 66.2 5.1 24 298-321 29-52 (242)
472 COG2884 FtsE Predicted ATPase 96.8 0.0014 3.1E-08 64.0 4.8 38 298-347 29-66 (223)
473 cd03230 ABC_DR_subfamily_A Thi 96.8 0.0016 3.5E-08 62.5 5.1 24 298-321 27-50 (173)
474 PRK13796 GTPase YqeH; Provisio 96.8 0.0055 1.2E-07 66.3 9.7 52 366-426 58-110 (365)
475 COG3842 PotA ABC-type spermidi 96.8 0.0013 2.8E-08 70.5 4.7 24 298-321 32-55 (352)
476 KOG0781 Signal recognition par 96.8 0.0059 1.3E-07 66.8 9.7 163 255-429 343-547 (587)
477 cd03295 ABC_OpuCA_Osmoprotecti 96.8 0.0015 3.2E-08 66.1 5.0 24 298-321 28-51 (242)
478 TIGR01184 ntrCD nitrate transp 96.8 0.0015 3.2E-08 65.8 4.8 24 298-321 12-35 (230)
479 PRK15056 manganese/iron transp 96.8 0.0015 3.2E-08 67.5 4.9 24 298-321 34-57 (272)
480 cd03298 ABC_ThiQ_thiamine_tran 96.8 0.0016 3.5E-08 64.4 5.0 24 298-321 25-48 (211)
481 PRK13638 cbiO cobalt transport 96.8 0.0015 3.2E-08 67.4 4.8 24 298-321 28-51 (271)
482 PRK09536 btuD corrinoid ABC tr 96.8 0.0016 3.5E-08 71.2 5.3 24 298-321 30-53 (402)
483 PRK11264 putative amino-acid A 96.8 0.0017 3.7E-08 65.9 5.1 24 298-321 30-53 (250)
484 cd03294 ABC_Pro_Gly_Bertaine T 96.8 0.0016 3.6E-08 67.1 5.1 24 298-321 51-74 (269)
485 PRK10895 lipopolysaccharide AB 96.8 0.0016 3.4E-08 65.8 4.9 24 298-321 30-53 (241)
486 PRK13543 cytochrome c biogenes 96.8 0.0017 3.6E-08 64.6 5.0 24 298-321 38-61 (214)
487 TIGR03410 urea_trans_UrtE urea 96.8 0.0015 3.3E-08 65.4 4.7 24 298-321 27-50 (230)
488 cd03297 ABC_ModC_molybdenum_tr 96.8 0.0017 3.6E-08 64.4 4.9 24 298-321 24-47 (214)
489 PRK13641 cbiO cobalt transport 96.8 0.0016 3.4E-08 67.9 4.9 24 298-321 34-57 (287)
490 PRK13646 cbiO cobalt transport 96.8 0.0015 3.3E-08 68.0 4.9 24 298-321 34-57 (286)
491 PRK14250 phosphate ABC transpo 96.8 0.0016 3.5E-08 65.9 4.9 24 298-321 30-53 (241)
492 COG1118 CysA ABC-type sulfate/ 96.8 0.0032 7E-08 65.7 7.0 33 298-341 29-61 (345)
493 PRK13539 cytochrome c biogenes 96.7 0.0017 3.8E-08 64.1 4.9 24 298-321 29-52 (207)
494 PRK13649 cbiO cobalt transport 96.7 0.0017 3.7E-08 67.2 5.0 24 298-321 34-57 (280)
495 PRK09493 glnQ glutamine ABC tr 96.7 0.0018 3.9E-08 65.4 5.0 24 298-321 28-51 (240)
496 TIGR01288 nodI ATP-binding ABC 96.7 0.0017 3.7E-08 68.2 5.1 24 298-321 31-54 (303)
497 PRK13652 cbiO cobalt transport 96.7 0.0017 3.7E-08 67.2 5.0 24 298-321 31-54 (277)
498 cd03214 ABC_Iron-Siderophores_ 96.7 0.0019 4E-08 62.5 4.9 24 298-321 26-49 (180)
499 COG1101 PhnK ABC-type uncharac 96.7 0.0016 3.4E-08 64.9 4.3 24 298-321 33-56 (263)
500 cd03246 ABCC_Protease_Secretio 96.7 0.0019 4.1E-08 62.1 4.8 24 298-321 29-52 (173)
No 1
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=1.4e-81 Score=657.30 Aligned_cols=319 Identities=43% Similarity=0.628 Sum_probs=293.2
Q ss_pred CCCeEEEEeeccCCCCchhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHH
Q 007583 60 DPPRLFLVQPRLKPPTFLQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIK 139 (597)
Q Consensus 60 ~~~~~~~v~~~~~~~~~~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~ 139 (597)
.+.++++|++..... ..+..|+|+.+||+|+|. .|+..++|++ .+|||+||||+||++||+
T Consensus 2 ~~~r~~~v~v~~~~~-~~~~~leEl~~La~tag~--------------~v~~~~~q~r----~~pdp~~~iG~GK~eEi~ 62 (411)
T COG2262 2 KGERALLVGVSKDQD-DFEESLEELAELAETAGY--------------EVVEVVTQKR----ERPDPKTYIGSGKLEEIA 62 (411)
T ss_pred CccceEEEEeccccc-cchhhHHHHHHHHHHcCC--------------eEeeeEEEec----cCCCcceecCcchHHHHH
Confidence 457889999888653 358899999999999953 3788999973 468999999999999999
Q ss_pred HHHhcccccCCCcEEEECCCCChHHHHHHHHhcCCCccchhhhHHHHHHhhccchHHHHHHHHHhhhhcccccccccCCC
Q 007583 140 CHINGAESKGELDAIFVNAILSGIQQRNLERAWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPD 219 (597)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~~Lsp~Q~~nle~~~~~~V~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~ 219 (597)
+.++. .+||+||||++|||+|++|||+++||+|+||++||||||++||+|+|||||||||||+|++|||++.|.++
T Consensus 63 ~~v~~----~~ad~VIf~~~LsP~Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l 138 (411)
T COG2262 63 EAVEE----TGADLVIFDHELSPSQLRNLEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHL 138 (411)
T ss_pred HHHHh----cCCCEEEECCcCCHHHHHHHHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhc
Confidence 99986 49999999999999999999999999999999999999999999999999999999999999999876443
Q ss_pred CCcccccCchhhhhhhccCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007583 220 GRLTFGETGEAEVVSARGRGSGGRGFISGAGETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLAT 299 (597)
Q Consensus 220 ~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~ge~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~ 299 (597)
+ +.| ||+|+ +||||+++|.+||.|+.||.+|+++|++++++|+.+|++|.++ ++|.
T Consensus 139 --------------~--~~G-ggiG~-rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~------~~p~ 194 (411)
T COG2262 139 --------------S--RLG-GGIGF-RGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRS------GIPL 194 (411)
T ss_pred --------------c--ccc-CCCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------CCCe
Confidence 2 122 45555 5999999999999999999999999999999999999999876 8999
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCE
Q 007583 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 379 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDl 379 (597)
|++|||||||||||||+|++..+++.+++|+|++|+++.+.+++|..+++.||+|||+++|+.++++|++|+++...||+
T Consensus 195 vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDl 274 (411)
T COG2262 195 VALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADL 274 (411)
T ss_pred EEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCE
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 380 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 380 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
++||+|+|+|...++.+.+.++|.++++.+ .|+|+|+||+|++.+.
T Consensus 275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~---~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 275 LLHVVDASDPEILEKLEAVEDVLAEIGADE---IPIILVLNKIDLLEDE 320 (411)
T ss_pred EEEEeecCChhHHHHHHHHHHHHHHcCCCC---CCEEEEEecccccCch
Confidence 999999999999999999999999999876 5999999999987653
No 2
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=8.7e-69 Score=581.83 Aligned_cols=318 Identities=36% Similarity=0.510 Sum_probs=278.5
Q ss_pred CCCCeEEEEeeccCCCCchhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHH
Q 007583 59 DDPPRLFLVQPRLKPPTFLQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETI 138 (597)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el 138 (597)
...+|++||++..+.. ..++.|+|+..||+|+|. .|+..++|++ .+|||+||||+||++||
T Consensus 6 ~~~~~~~l~~~~~~~~-~~~~~~~El~~L~~~~g~--------------~v~~~~~q~~----~~~~~~~~~g~gk~~e~ 66 (426)
T PRK11058 6 EAGEQAVLVHIYFSQD-KDMEDLQEFESLVSSAGV--------------EALQVITGSR----KAPHPKYFVGEGKAVEI 66 (426)
T ss_pred CCCceEEEEEecCCCC-chhhhHHHHHHHHHHCCC--------------EEEEEEEEec----CCCCCCeeecccHHHHH
Confidence 3447999999877543 346789999999999963 4788999973 46899999999999999
Q ss_pred HHHHhcccccCCCcEEEECCCCChHHHHHHHHhcCCCccchhhhHHHHHHhhccchHHHHHHHHHhhhhcccccccccCC
Q 007583 139 KCHINGAESKGELDAIFVNAILSGIQQRNLERAWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGP 218 (597)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~~~~Lsp~Q~~nle~~~~~~V~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~ 218 (597)
++++++. ++|+||||++|||+|+||||++||++|+|||.|||+||++||+|+|||||||||+|+|++|||.+.|.+
T Consensus 67 ~~~~~~~----~~~~vi~~~~lsp~q~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~ 142 (426)
T PRK11058 67 AEAVKAT----GASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTH 142 (426)
T ss_pred HHHHHhc----CCCEEEECCCCCHHHHHHHHHHHCCeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccc
Confidence 9999864 999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCcccccCchhhhhhhccCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007583 219 DGRLTFGETGEAEVVSARGRGSGGRGFISGAGETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLA 298 (597)
Q Consensus 219 ~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~ge~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~ 298 (597)
++ +++ ||+|+ +||||+++|.+||.|++++.+++++|+++.++|..+|..|.+. +.|
T Consensus 143 l~---------------~~~--gg~g~-~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~------~~p 198 (426)
T PRK11058 143 LE---------------RQK--GGIGL-RGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKA------DVP 198 (426)
T ss_pred hh---------------hhc--CCCCC-CCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc------CCC
Confidence 32 333 45554 6999999999999999999999999999999888777666543 679
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
.|+|+|++|||||||||+|++..+.+.+.+|+|++++.+.+.++++..+.++||||+++.+|+++++.|..++.++..||
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~AD 278 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQAT 278 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999988888889999999999999886666899999999999889999999999999999999
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++++|+|++++....+...+.++|..++.. ..|+|+|+||+|+.+
T Consensus 279 lIL~VvDaS~~~~~e~l~~v~~iL~el~~~---~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 279 LLLHVVDAADVRVQENIEAVNTVLEEIDAH---EIPTLLVMNKIDMLD 323 (426)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHHhccC---CCCEEEEEEcccCCC
Confidence 999999999987667776777888887643 259999999999853
No 3
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=7.3e-68 Score=562.43 Aligned_cols=315 Identities=45% Similarity=0.630 Sum_probs=277.2
Q ss_pred eEEEEeeccCCCCchhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHHHHH
Q 007583 63 RLFLVQPRLKPPTFLQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHI 142 (597)
Q Consensus 63 ~~~~v~~~~~~~~~~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~~~~ 142 (597)
|++||++........+.+|+|+.+||+|+|. .|+.+++|++ .+|||+||||+||++||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~E~~~L~~~~~~--------------~v~~~~~~~~----~~~~~~~~~g~gk~~e~~~~~ 62 (351)
T TIGR03156 1 RAILVGVDLPEEDDEEESLEELAELAETAGA--------------EVVGTVTQKR----SRPDPATYIGKGKVEEIAELV 62 (351)
T ss_pred CEEEEEEecCCCcchhhhHHHHHHHHHHCCC--------------EEEEEEEEec----CCCCCCeEecccHHHHHHHHH
Confidence 5889998765433345789999999999953 3788899973 468999999999999999999
Q ss_pred hcccccCCCcEEEECCCCChHHHHHHHHhcCCCccchhhhHHHHHHhhccchHHHHHHHHHhhhhcccccccccCCCCCc
Q 007583 143 NGAESKGELDAIFVNAILSGIQQRNLERAWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRL 222 (597)
Q Consensus 143 ~~~~~~~~~~~v~~~~~Lsp~Q~~nle~~~~~~V~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~ 222 (597)
++ .++|+||||++|||+|+||||++||++|+||++|||+||++||+|+||||||+||+|+|.+||+.+.|.+
T Consensus 63 ~~----~~~~~vi~~~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~---- 134 (351)
T TIGR03156 63 EE----LEADLVIFDHELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTH---- 134 (351)
T ss_pred Hh----cCCCEEEECCCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHH----
Confidence 86 4999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred ccccCchhhhhhhccCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 007583 223 TFGETGEAEVVSARGRGSGGRGFISGAGETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAV 302 (597)
Q Consensus 223 ~~~~~g~~e~~~~~~~~~g~~g~~~g~ge~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaL 302 (597)
++ +.+ |++|+ +||||++++.+||.|+++|.+|+++|+++.++|..+|..|.+. +.+.|+|
T Consensus 135 ----------l~-~~~--~~i~~-~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~------~~~~Val 194 (351)
T TIGR03156 135 ----------LS-RQG--GGIGT-RGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRA------DVPTVAL 194 (351)
T ss_pred ----------HH-hhc--CCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc------CCcEEEE
Confidence 22 222 45666 6999999999999999999999999999999999888777554 6799999
Q ss_pred EcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEE
Q 007583 303 VGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVH 382 (597)
Q Consensus 303 VG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~ 382 (597)
+|++|||||||+|+|++....+.+.+|+|++++.+.+.++++..+.++||||+++.+|+++++.|.++++++..||++++
T Consensus 195 vG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~ 274 (351)
T TIGR03156 195 VGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLH 274 (351)
T ss_pred ECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEE
Confidence 99999999999999999887778889999999999999988899999999999999999999999999999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 383 VLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 383 VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|+|++++....+...+..++..++... +|+|+|+||+|+.+
T Consensus 275 VvD~s~~~~~~~~~~~~~~L~~l~~~~---~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 275 VVDASDPDREEQIEAVEKVLEELGAED---IPQLLVYNKIDLLD 315 (351)
T ss_pred EEECCCCchHHHHHHHHHHHHHhccCC---CCEEEEEEeecCCC
Confidence 999998876666667778888876532 59999999999854
No 4
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=100.00 E-value=1.1e-58 Score=468.38 Aligned_cols=326 Identities=43% Similarity=0.598 Sum_probs=278.9
Q ss_pred hhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHHHHHhcccccCCCcEEEE
Q 007583 77 LQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIFV 156 (597)
Q Consensus 77 ~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~~~~v~~ 156 (597)
.+.+++|+.+|+++++.| .+....+.+. .+++++|||+|++++|...+.+. .++++|.
T Consensus 4 ae~qleea~aLvdtl~~~--------------nvv~t~~kpv----~~~rk~~~gsGn~e~Li~~i~aa----~at~~f~ 61 (410)
T KOG0410|consen 4 AEVQLEEANALVDTLQQR--------------NVVRTWAKPV----LDNRKTYIGSGNVEELIIEIFAA----HATTKFA 61 (410)
T ss_pred HHHHHHHHHHHHHhhccc--------------hhhhheeeec----cCCcceeeecCcHHHHHHHHhcC----ccceeee
Confidence 467899999999999854 2333444443 35789999999999999999865 6899999
Q ss_pred CC-CCChHHHHHHHHhcCCCccchhhhHHHHHHhhccchHHHHHHHHHhhhhcccccccccCCCCCcccccCchhhhhhh
Q 007583 157 NA-ILSGIQQRNLERAWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSA 235 (597)
Q Consensus 157 ~~-~Lsp~Q~~nle~~~~~~V~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~ 235 (597)
|. .+.|.|+.+++..|+++|+||+.+||+||.++|+|+||+|||.||+++|.++|+.+.|.+. .
T Consensus 62 nv~a~~a~~~~ek~r~~~VrvfDr~~~vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl---------------~ 126 (410)
T KOG0410|consen 62 NVQAELAALMYEKSRLVRVRVFDRRHTVLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHL---------------R 126 (410)
T ss_pred cccccchhHHHHHhhhcceeeecchhhHHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHH---------------H
Confidence 96 7999999999999999999999999999999999999999999999999999998876432 2
Q ss_pred ccCCCCCCCccCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHH
Q 007583 236 RGRGSGGRGFISGAGETELQLQR-RRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLV 314 (597)
Q Consensus 236 ~~~~~g~~g~~~g~ge~~~e~~r-r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLl 314 (597)
++. |++ ..|+||..++.+. |.++.++.+++++|+.++++| ..|.+|.. ...|+|++|||||||||||+
T Consensus 127 r~~--g~~--v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr-~~r~gr~~------~s~pviavVGYTNaGKsTLi 195 (410)
T KOG0410|consen 127 RQS--GGQ--VKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKR-QRRVGREG------ESSPVIAVVGYTNAGKSTLI 195 (410)
T ss_pred hcC--CCc--ccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcccc------CCCceEEEEeecCccHHHHH
Confidence 333 444 4699999999987 666889999999999999988 33334332 36899999999999999999
Q ss_pred HHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHH
Q 007583 315 SALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEH 394 (597)
Q Consensus 315 naL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~ 394 (597)
++|++..+...+++|+|+|||.+...+|+|..+++.||+||++++|..++.+|.+|++++..+|+++||+|+|+|..+.+
T Consensus 196 kaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q 275 (410)
T KOG0410|consen 196 KALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQ 275 (410)
T ss_pred HHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC-ccCCCcEEEEEecCCCCCcccccccccccccccccccccccCCCCcc
Q 007583 395 RTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYHDEEMGDVEYIDGDDISNFSRAEDKDTTSEP 455 (597)
Q Consensus 395 ~~~v~~iL~~lgi~-~~~~~P~IiVlNKiDl~~~~~~~~~~i~~~~~~~~~sa~~~~gi~eL 455 (597)
.+.++.+|.++++. ......+|-|.||+|........ +....+-.++..++|..++
T Consensus 276 ~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-----E~n~~v~isaltgdgl~el 332 (410)
T KOG0410|consen 276 RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-----EKNLDVGISALTGDGLEEL 332 (410)
T ss_pred HHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-----ccCCccccccccCccHHHH
Confidence 99999999999995 44455789999999987654330 1122455677777777776
No 5
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=99.94 E-value=3e-27 Score=204.44 Aligned_cols=90 Identities=39% Similarity=0.468 Sum_probs=82.8
Q ss_pred hhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHHHHHhcccccCCCcEEEE
Q 007583 77 LQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIFV 156 (597)
Q Consensus 77 ~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~~~~v~~ 156 (597)
.+++|+|+.+||+|+|. .|+..++|+ .++|||+||||+||++||+++++. .++|+|||
T Consensus 6 ~~~~l~El~~L~~t~g~--------------~vv~~~~q~----~~~~~p~~~iG~GK~eei~~~~~~----~~~d~vvf 63 (95)
T PF13167_consen 6 FEESLEELEELAETAGY--------------EVVGTVVQK----RRKPDPKTYIGSGKVEEIKELIEE----LDADLVVF 63 (95)
T ss_pred HHHHHHHHHHHHHHCCC--------------eEEEEEEec----CCCCCcceeechhHHHHHHHHHhh----cCCCEEEE
Confidence 57899999999999953 378899997 356999999999999999999975 49999999
Q ss_pred CCCCChHHHHHHHHhcCCCccchhhhHHHHHH
Q 007583 157 NAILSGIQQRNLERAWGKPVLDRVGLIIEIFN 188 (597)
Q Consensus 157 ~~~Lsp~Q~~nle~~~~~~V~DR~~lIL~IF~ 188 (597)
|++|||+|+||||++||++|+||+.|||+|||
T Consensus 64 d~~Lsp~Q~rNLe~~~~~~V~DRt~LIL~IFA 95 (95)
T PF13167_consen 64 DNELSPSQQRNLEKALGVKVIDRTQLILEIFA 95 (95)
T ss_pred CCCCCHHHHHHHHHHHCCeeeccccHHHHHcC
Confidence 99999999999999999999999999999997
No 6
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=8.5e-25 Score=214.44 Aligned_cols=168 Identities=54% Similarity=0.846 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccc
Q 007583 251 ETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFA 330 (597)
Q Consensus 251 e~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~ 330 (597)
||++|++++.+++++++++++|+.+.++|...+..|.++ +.++|+|+|++|||||||+|+|++......+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~ 74 (204)
T cd01878 1 ETQLETDRRLIRERIAKLRRELEKVKKQRELQRRRRKRS------GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFA 74 (204)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc------CCCeEEEECCCCCCHHHHHHHHhcchhccCCccce
Confidence 689999999999999999999999999988777665433 67999999999999999999999987666677788
Q ss_pred eecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcc
Q 007583 331 TLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEE 410 (597)
Q Consensus 331 Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~ 410 (597)
|.++....+.++++..+.+|||||+.+..+....+.+..++..+..+|++++|+|++++........+.+++..++...
T Consensus 75 t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~- 153 (204)
T cd01878 75 TLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED- 153 (204)
T ss_pred eccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC-
Confidence 8888888887755558999999999877666666667777777888999999999998766666666677777765432
Q ss_pred CCCcEEEEEecCCCCCc
Q 007583 411 KLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 411 ~~~P~IiVlNKiDl~~~ 427 (597)
.|+++|+||+|+...
T Consensus 154 --~~viiV~NK~Dl~~~ 168 (204)
T cd01878 154 --IPMILVLNKIDLLDD 168 (204)
T ss_pred --CCEEEEEEccccCCh
Confidence 599999999998653
No 7
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.91 E-value=2.1e-24 Score=222.18 Aligned_cols=241 Identities=17% Similarity=0.136 Sum_probs=171.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC------------------cccccccceecCceeEEEecCCceEEEeecccccccch
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL------------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP 360 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v------------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp 360 (597)
+|+++|++|+|||||+++|+...- ..+.....|++.....+.+ ++..+.++||||+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~d--- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVD--- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHH---
Confidence 489999999999999999973210 1233456677777777777 788999999999832
Q ss_pred hhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-ccccccccc
Q 007583 361 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYIDGDD 439 (597)
Q Consensus 361 ~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~~~~ 439 (597)
........+..+|++++|+|+..+ ...+...++..+...++ |+++|+||+|+.+.+.. .++++...+
T Consensus 77 -----f~~~~~~~l~~aD~ailVVDa~~g-~~~~t~~~~~~~~~~~~------p~ivviNK~D~~~a~~~~~~~~l~~~l 144 (270)
T cd01886 77 -----FTIEVERSLRVLDGAVAVFDAVAG-VEPQTETVWRQADRYNV------PRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred -----HHHHHHHHHHHcCEEEEEEECCCC-CCHHHHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHHHHh
Confidence 123345567789999999999886 45556677777777665 89999999999865421 133333332
Q ss_pred ----cccc--ccc-cccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhhhcc
Q 007583 440 ----ISNF--SRA-EDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNA 512 (597)
Q Consensus 440 ----~~~~--~sa-~~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y~~~ 512 (597)
.... .++ ....|+-+++....+.+-...+.......++..+.+.+.+.+++++|... +.|++++ ++|+++
T Consensus 145 ~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~va-e~dd~L~--e~yl~~ 221 (270)
T cd01886 145 GANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLA-EFDDELM--EKYLEG 221 (270)
T ss_pred CCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh-cCCHHHH--HHHhCC
Confidence 1111 122 23456667766666644111122112223455677778888888888886 4455566 889999
Q ss_pred cCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHH
Q 007583 513 AEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERL 562 (597)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~ 562 (597)
++++..+...++..+...+.++| |+|+||.+|.|++.||+.|.+.+
T Consensus 222 ~~~~~~el~~~l~~~~~~~~~~P----V~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 222 EEITEEEIKAAIRKGTIANKIVP----VLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred CCCCHHHHHHHHHHHHHcCcEEE----EEeCcCCCCcCHHHHHHHHHHhc
Confidence 99998889999999999999988 99999999999999999999876
No 8
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=5.4e-23 Score=225.85 Aligned_cols=215 Identities=27% Similarity=0.286 Sum_probs=160.1
Q ss_pred CCCccchhhhHHHHHHhhccchHHHHHHHHHhhhhcccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCChh
Q 007583 173 GKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAGET 252 (597)
Q Consensus 173 ~~~V~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~ge~ 252 (597)
|+-.+.+.+.|.++..+. | +..+|+.|++|.+.+++++..|.. +++.....-.. .+.+|+|.
T Consensus 118 gk~dL~qaEai~~li~a~--t-~~~~~~al~~l~G~l~~~~~~~r~------------~l~~~~a~iea---~iDf~ee~ 179 (449)
T PRK05291 118 GKLDLTQAEAIADLIDAK--T-EAAARLALRQLQGALSKLINELRE------------ELLELLALVEA---AIDFPEED 179 (449)
T ss_pred CCcCHHHHHHHHHHHhCC--C-HHHHHHHHHhcCcHHHHHHHHHHH------------HHHHHHHHheE---EccCCCCC
Confidence 777888888999988654 3 567899999999999998765421 11111111111 23468888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccce
Q 007583 253 ELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFAT 331 (597)
Q Consensus 253 ~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~T 331 (597)
..+.+++.+..+++.++++|+++.+++...+. .+ ..++|+++|++|+|||||+|+|++... .+.+.+++|
T Consensus 180 ~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~--~~-------~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT 250 (449)
T PRK05291 180 IEFLSDEKILEKLEELIAELEALLASARQGEI--LR-------EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTT 250 (449)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-------cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc
Confidence 88899999999999999999999987754332 22 237899999999999999999999775 456678888
Q ss_pred ecCceeEEEecCCceEEEeecccccccchhhHHHH--HHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc
Q 007583 332 LDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDA--FHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE 409 (597)
Q Consensus 332 ld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~--f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~ 409 (597)
.+.....+.+ +|.++.++||||+.. +.+.++. +..++..+..+|++++|+|++++....... ++..
T Consensus 251 ~d~~~~~i~~-~g~~i~l~DT~G~~~--~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~----~l~~----- 318 (449)
T PRK05291 251 RDVIEEHINL-DGIPLRLIDTAGIRE--TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDE----ILEE----- 318 (449)
T ss_pred cccEEEEEEE-CCeEEEEEeCCCCCC--CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHH----HHHh-----
Confidence 8887777777 788999999999864 4444454 466788899999999999998875444322 2222
Q ss_pred cCCCcEEEEEecCCCCC
Q 007583 410 EKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 410 ~~~~P~IiVlNKiDl~~ 426 (597)
....|+++|+||+|+.+
T Consensus 319 ~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 319 LKDKPVIVVLNKADLTG 335 (449)
T ss_pred cCCCCcEEEEEhhhccc
Confidence 12359999999999864
No 9
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.88 E-value=5.1e-22 Score=204.23 Aligned_cols=233 Identities=15% Similarity=0.041 Sum_probs=149.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccc----------------------ccccceecCceeEEEecCCceEEEeeccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSD----------------------ARLFATLDPRLKSVVLPSGRKVLLSDTVG 354 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~----------------------~~~f~Tld~t~~~i~l~~g~~i~LiDTpG 354 (597)
.++|+|+|+.|||||||+++|+.....+. .....|+......+.+ .+..+.++||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 36899999999999999999985321111 0111222223334555 678999999999
Q ss_pred ccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-ccc
Q 007583 355 FISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVE 433 (597)
Q Consensus 355 ~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~ 433 (597)
+.+. ...+...+..+|++++|+|++.+ ...+...+++.+...++ |+++|+||+|+...... .++
T Consensus 81 ~~df--------~~~~~~~l~~aD~~IlVvda~~g-~~~~~~~i~~~~~~~~~------P~iivvNK~D~~~a~~~~~~~ 145 (267)
T cd04169 81 HEDF--------SEDTYRTLTAVDSAVMVIDAAKG-VEPQTRKLFEVCRLRGI------PIITFINKLDREGRDPLELLD 145 (267)
T ss_pred chHH--------HHHHHHHHHHCCEEEEEEECCCC-ccHHHHHHHHHHHhcCC------CEEEEEECCccCCCCHHHHHH
Confidence 8321 12245567789999999999876 44555666666666554 89999999998766532 133
Q ss_pred cccccc----ccccccc---cccCCCCcccccccccCCCCCCC-CCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCc
Q 007583 434 YIDGDD----ISNFSRA---EDKDTTSEPVDVECIDNYGGDDA-DNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNV 505 (597)
Q Consensus 434 ~i~~~~----~~~~~sa---~~~~gi~eL~~~~~~~~~~e~~~-~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~ 505 (597)
++...+ .+...+. ....|+.++++...+.+....+. ..+...++.++.+.+.+.+++++|.|++.++. .+
T Consensus 146 ~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~-~~- 223 (267)
T cd04169 146 EIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELEL-LE- 223 (267)
T ss_pred HHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCcc-ch-
Confidence 443333 2222222 23445566666666544121111 12223335566788999999999999865432 22
Q ss_pred hhhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHh
Q 007583 506 EEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLK 563 (597)
Q Consensus 506 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~ 563 (597)
++ .......+...+.++| |+|+||.+|.|++.||++|.+.+.
T Consensus 224 -~~-----------~~~~~~~~~~~~~~~P----v~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 224 -GA-----------GPEFDQEAFLAGELTP----VFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred -hh-----------hHHHhHHHHHcCCEEE----EEecccccCcCHHHHHHHHHHHCC
Confidence 11 1123344666666666 999999999999999999998763
No 10
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.88 E-value=2.5e-22 Score=203.05 Aligned_cols=215 Identities=17% Similarity=0.187 Sum_probs=142.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc------------------cccccceecCceeEEEecCCceEEEeecccccccch
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFS------------------DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP 360 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~------------------~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp 360 (597)
+|+++|+.|+|||||+++|+.....+ +.....|.......+.+ ++..+.++||||+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 48999999999999999998642110 11222333344445555 6788999999999431
Q ss_pred hhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-ccccccccc
Q 007583 361 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYIDGDD 439 (597)
Q Consensus 361 ~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~~~~ 439 (597)
...+...+..+|.+++|+|++++ ...+...+++.+...++ |+++|+||+|+...+.. .++++...+
T Consensus 78 ------~~~~~~~l~~aD~~IlVvd~~~g-~~~~~~~~~~~~~~~~~------P~iivvNK~D~~~a~~~~~~~~i~~~~ 144 (237)
T cd04168 78 ------IAEVERSLSVLDGAILVISAVEG-VQAQTRILWRLLRKLNI------PTIIFVNKIDRAGADLEKVYQEIKEKL 144 (237)
T ss_pred ------HHHHHHHHHHhCeEEEEEeCCCC-CCHHHHHHHHHHHHcCC------CEEEEEECccccCCCHHHHHHHHHHHH
Confidence 12344567779999999999987 45566777777777665 89999999999865532 255555544
Q ss_pred ccccccc-cccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhhhcccCCCCC
Q 007583 440 ISNFSRA-EDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQP 518 (597)
Q Consensus 440 ~~~~~sa-~~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y~~~~~~~~~ 518 (597)
....... .+. .... .. .....+..+.|.+.+.++++||.|+ +++++++.
T Consensus 145 ~~~~~~~~~p~--~~~~--------~~------~~~~~~~~l~e~vae~dd~l~e~yl--------------~~~~~~~~ 194 (237)
T cd04168 145 SSDIVPMQKVG--LAPN--------IC------ETNEIDDEFWETLAEGDDELLEKYL--------------EGGPIEEL 194 (237)
T ss_pred CCCeEEEECCc--Eeee--------ee------eeeeccHHHHHHHhcCCHHHHHHHh--------------CCCCCCHH
Confidence 2111111 111 0000 00 0011224456666666666666665 44445556
Q ss_pred ccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHh
Q 007583 519 ESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLK 563 (597)
Q Consensus 519 ~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~ 563 (597)
++..+++.+...+.++| |+|+||.+|.|++.||++|.+.+.
T Consensus 195 el~~~l~~~~~~~~~~P----v~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 195 ELDNELSARIAKRKVFP----VYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred HHHHHHHHHHHhCCeEE----EEEccccCCcCHHHHHHHHHHhcC
Confidence 66677888888888888 999999999999999999998763
No 11
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.87 E-value=5.2e-22 Score=203.88 Aligned_cols=239 Identities=18% Similarity=0.191 Sum_probs=153.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccc------------------ccccceecCceeEEEecCCceEEEeecccccccch
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSD------------------ARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP 360 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~------------------~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp 360 (597)
+|+|+|++|||||||+|+|++....+. .....|+......+.+ ++..+.++||||+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence 489999999999999999975321100 0123344444455555 678899999999932
Q ss_pred hhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-ccccccccc
Q 007583 361 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYIDGDD 439 (597)
Q Consensus 361 ~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~~~~ 439 (597)
....+...+..+|++++|+|++.+. ..+...++..+...++ |+++|+||+|+...... .++.+...+
T Consensus 77 -----f~~~~~~~l~~aD~~i~Vvd~~~g~-~~~~~~~~~~~~~~~~------p~iivvNK~D~~~~~~~~~~~~l~~~~ 144 (268)
T cd04170 77 -----FVGETRAALRAADAALVVVSAQSGV-EVGTEKLWEFADEAGI------PRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred -----HHHHHHHHHHHCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCC------CEEEEEECCccCCCCHHHHHHHHHHHh
Confidence 1233455677899999999998863 3444555666666654 89999999999876422 234443333
Q ss_pred ----ccccccccccCCC---CcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhhhcc
Q 007583 440 ----ISNFSRAEDKDTT---SEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNA 512 (597)
Q Consensus 440 ----~~~~~sa~~~~gi---~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y~~~ 512 (597)
.+...+...+.++ -+++....+.+.. +.......++..+.+.+.+.+++++|... +.|++++ ++|+++
T Consensus 145 ~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~e~~a-~~dd~l~--e~yl~~ 219 (268)
T cd04170 145 GRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSP--GAPSEEIEIPEELKEEVAEAREELLEAVA-ETDDELM--EKYLEG 219 (268)
T ss_pred CCCeEEEEecccCCCceeEEEEcccCEEEEccC--CCcceeccCCHHHHHHHHHHHHHHHHHHh-hCCHHHH--HHHhCC
Confidence 2222333333333 3333333332211 11111122334455555566666666653 4444444 778887
Q ss_pred cCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHH
Q 007583 513 AEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERL 562 (597)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~ 562 (597)
++++..+....++.+...+.++| |+|+||.+|.|+++||++|.+.+
T Consensus 220 ~~~~~~~l~~~l~~~~~~~~~~p----v~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 220 GELTEEELHAGLRRALRAGLLVP----VLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred CCCCHHHHHHHHHHHHHhCCEEE----EEEeeCCCCcCHHHHHHHHHHhC
Confidence 77777777788888888888888 99999999999999999999876
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.84 E-value=1.5e-20 Score=177.88 Aligned_cols=119 Identities=26% Similarity=0.285 Sum_probs=90.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
.||++|.+|+|||||||+|+|....+.+.++.|.+...+.+.+ ++..+.++||||..+-.+....+............|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 6999999999999999999999988899999999998888888 779999999999876444433333332222345799
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
++++|+|+++ .+... .+...+.++|+ |+|+|+||+|+...
T Consensus 81 ~ii~VvDa~~--l~r~l-~l~~ql~e~g~------P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 81 LIIVVVDATN--LERNL-YLTLQLLELGI------PVVVVLNKMDEAER 120 (156)
T ss_dssp EEEEEEEGGG--HHHHH-HHHHHHHHTTS------SEEEEEETHHHHHH
T ss_pred EEEEECCCCC--HHHHH-HHHHHHHHcCC------CEEEEEeCHHHHHH
Confidence 9999999986 34444 34455667775 99999999997654
No 13
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.83 E-value=1.2e-20 Score=188.56 Aligned_cols=203 Identities=22% Similarity=0.339 Sum_probs=140.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccc-cccceecCceeEEEecC----------------------C--------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDA-RLFATLDPRLKSVVLPS----------------------G-------- 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~-~~f~Tld~t~~~i~l~~----------------------g-------- 344 (597)
..++|.++|+.|+||||++.+|......... .....+||.+..+.++. |
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNL 97 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNL 97 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHH
Confidence 4578999999999999999999864322222 22234566554444321 1
Q ss_pred ------------------ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCC----ChHHHHHHHHHHH
Q 007583 345 ------------------RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAP----NLEEHRTTVLQVL 402 (597)
Q Consensus 345 ------------------~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~----~~~~~~~~v~~iL 402 (597)
.+++++||||+|+.+.|...+++..-..+.....++++|+|.... .+...+-....+|
T Consensus 98 F~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil 177 (366)
T KOG1532|consen 98 FATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL 177 (366)
T ss_pred HHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH
Confidence 346899999999887776555443322233456789999997432 1344445555666
Q ss_pred HHcCCCccCCCcEEEEEecCCCCCcccccccccccccccccccccccCCCCcccccccccCCCCCCCCCCCCCcccchhh
Q 007583 403 QQVGVSEEKLKNMIEVWNKIDYHDEEMGDVEYIDGDDISNFSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGE 482 (597)
Q Consensus 403 ~~lgi~~~~~~P~IiVlNKiDl~~~~~~~~~~i~~~~~~~~~sa~~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e 482 (597)
.+..+ |+|+|+||+|+.+.... .+|+..|.. +++
T Consensus 178 yktkl------p~ivvfNK~Dv~d~~fa------~eWm~DfE~----------------------------------Fqe 211 (366)
T KOG1532|consen 178 YKTKL------PFIVVFNKTDVSDSEFA------LEWMTDFEA----------------------------------FQE 211 (366)
T ss_pred HhccC------CeEEEEecccccccHHH------HHHHHHHHH----------------------------------HHH
Confidence 66555 99999999999998877 455544422 344
Q ss_pred hhhcccchhhhhhhhcCCCCCCchhhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHH
Q 007583 483 SMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERL 562 (597)
Q Consensus 483 ~~~~~~~~l~e~~l~e~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~ 562 (597)
++.+.+..++.....+++ +..++||++.. +|+|||+||.|+++|+.+|++.+
T Consensus 212 Al~~~~~~y~s~l~~SmS---L~leeFY~~lr-------------------------tv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 212 ALNEAESSYMSNLTRSMS---LMLEEFYRSLR-------------------------TVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred HHHhhccchhHHhhhhHH---HHHHHHHhhCc-------------------------eEEEecccCCcHHHHHHHHHHHH
Confidence 455555566666655555 33788996644 99999999999999999999999
Q ss_pred hhcccccCCC
Q 007583 563 KTLDDKQKSP 572 (597)
Q Consensus 563 ~~~~~~~~~~ 572 (597)
+|++..|+|.
T Consensus 264 dEy~~~ykp~ 273 (366)
T KOG1532|consen 264 DEYEEEYKPE 273 (366)
T ss_pred HHHHHHhhhH
Confidence 9998888873
No 14
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=185.23 Aligned_cols=126 Identities=25% Similarity=0.312 Sum_probs=101.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l 374 (597)
....|||+|.||+|||||+|+|.|..+.+.+....|++..+..+...+..+++++||||+... -+.+.... +.....+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p-k~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP-KHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc-chHHHHHHHHHHHHHh
Confidence 356999999999999999999999999888888888888888888878899999999999765 33333333 4456677
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
..+|++++|+|+.++ +....+.+.+.|.... .|+|+++||+|+..++.
T Consensus 84 ~dvDlilfvvd~~~~-~~~~d~~il~~lk~~~------~pvil~iNKID~~~~~~ 131 (298)
T COG1159 84 KDVDLILFVVDADEG-WGPGDEFILEQLKKTK------TPVILVVNKIDKVKPKT 131 (298)
T ss_pred ccCcEEEEEEecccc-CCccHHHHHHHHhhcC------CCeEEEEEccccCCcHH
Confidence 889999999999886 4456666667776633 39999999999987654
No 15
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=3.1e-19 Score=189.00 Aligned_cols=128 Identities=35% Similarity=0.394 Sum_probs=99.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~ 373 (597)
-++.|+|||++|||||||||+|++....+.+++|+|+.|..+.+.+.++..+.++||||++..... .+. ...+.+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg---~~flrh 233 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLG---HRFLKH 233 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHH---HHHHHH
Confidence 357899999999999999999999887788899999999999998867788999999999864332 222 234667
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+++++||+|+++....+....+.+.|....- ....+|+|+|+||+|+.+.
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~-~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP-ELADKPRILVLNKIDLLDE 286 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh-hcccCCeEEEEECcccCCc
Confidence 7789999999999976545555566565655421 1123699999999998653
No 16
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=3.2e-19 Score=190.82 Aligned_cols=120 Identities=28% Similarity=0.318 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~ 375 (597)
|+|||||.||+|||||||+|+|... .+++.++.|.|...+...+ .+..+.++||.|+....+..+.... ..++.++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 8999999999999999999999885 4678889999999999988 7788999999999755444444444 56888999
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
.||++++|+|+..+. ....+.+.++|...+ +|+|+|+||+|-.
T Consensus 83 eADvilfvVD~~~Gi-t~~D~~ia~~Lr~~~------kpviLvvNK~D~~ 125 (444)
T COG1160 83 EADVILFVVDGREGI-TPADEEIAKILRRSK------KPVILVVNKIDNL 125 (444)
T ss_pred hCCEEEEEEeCCCCC-CHHHHHHHHHHHhcC------CCEEEEEEcccCc
Confidence 999999999998874 445566667777554 4999999999965
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.81 E-value=9.5e-19 Score=180.10 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=84.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~~ 376 (597)
.|+++|++|||||||+|+|+|..+.. ...+++|.+ ....+...++.++.++||||+... ...+...+ ..+...+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGASQIIFIDTPGFHEK-KHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCCcEEEEEECcCCCCC-cchHHHHHHHHHHHHHhh
Confidence 69999999999999999999988654 444444444 444555556778999999999654 12222222 335566788
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++...... ..+.+.+...+ .|+++|+||+|+..
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~~~------~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQNLK------RPVVLTRNKLDNKF 121 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHhcC------CCEEEEEECeeCCC
Confidence 99999999998764332 45556665544 39999999999864
No 18
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=186.66 Aligned_cols=154 Identities=27% Similarity=0.340 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc
Q 007583 256 LQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR 335 (597)
Q Consensus 256 ~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t 335 (597)
.....+..++..+.++|+++-..-. +.+..+. -..++|+|.||+|||||+|+|++.+..+......|++..
T Consensus 185 ~~~~~i~~~l~~~~~~l~~ll~~~~--~g~ilr~-------G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDv 255 (454)
T COG0486 185 LVLEKIREKLEELIAELDELLATAK--QGKILRE-------GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDV 255 (454)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhc-------CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccce
Confidence 3445566666677777777655322 2222322 378999999999999999999999976555444454444
Q ss_pred e-eEEEecCCceEEEeecccccccchhhHHHHH--HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCC
Q 007583 336 L-KSVVLPSGRKVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKL 412 (597)
Q Consensus 336 ~-~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f--~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~ 412 (597)
. ..+.+ +|.++.++||+|+.+. .+.++.. ..+...+..||++++|+|++.+........+ + .+ ...
T Consensus 256 iee~i~i-~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~-~---~~----~~~ 324 (454)
T COG0486 256 IEEDINL-NGIPVRLVDTAGIRET--DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALI-E---LL----PKK 324 (454)
T ss_pred EEEEEEE-CCEEEEEEecCCcccC--ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHH-H---hc----ccC
Confidence 4 45555 9999999999999743 4555554 6678889999999999999986333333222 2 11 123
Q ss_pred CcEEEEEecCCCCCccc
Q 007583 413 KNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 413 ~P~IiVlNKiDl~~~~~ 429 (597)
+|+++|+||+|+.....
T Consensus 325 ~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 325 KPIIVVLNKADLVSKIE 341 (454)
T ss_pred CCEEEEEechhcccccc
Confidence 58999999999987543
No 19
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2.4e-18 Score=185.61 Aligned_cols=126 Identities=29% Similarity=0.363 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~l 374 (597)
+.-|+|||++|||||||||+|++....+.+++|+|+.|..+.+.+.++..++++||||++..... .+... .+.++
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~---~l~~i 235 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIR---FLKHL 235 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHH---HHHHH
Confidence 45899999999999999999999888888999999999999988865677999999999864322 23323 35678
Q ss_pred HhcCEEEEEEeCCC---CChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTA---PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~---~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++. ....+....+.+.|..+.. ....+|+|+|+||+|+..
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP-KLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh-hhcCCCEEEEEeCCccCC
Confidence 88999999999872 2234444555555554321 112359999999999864
No 20
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.79 E-value=4.2e-19 Score=204.80 Aligned_cols=245 Identities=18% Similarity=0.122 Sum_probs=145.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc------------------ccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF------------------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~------------------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
++++|+|+|+.|+|||||+|+|+..... .+...+.|++.....+.+ ++..+.++||||+..
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcc
Confidence 5789999999999999999999743211 011345666666677777 788999999999953
Q ss_pred cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-cccccc
Q 007583 358 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~ 436 (597)
. ...+...+..+|++++|+|+.++ ...+...++..+...++ |+++|+||+|+...+.. .++++.
T Consensus 88 ~--------~~~~~~~l~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~------p~ivviNK~D~~~~~~~~~~~~i~ 152 (689)
T TIGR00484 88 F--------TVEVERSLRVLDGAVAVLDAVGG-VQPQSETVWRQANRYEV------PRIAFVNKMDKTGANFLRVVNQIK 152 (689)
T ss_pred h--------hHHHHHHHHHhCEEEEEEeCCCC-CChhHHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHH
Confidence 2 11234556779999999999886 34455566666766664 89999999999875422 133433
Q ss_pred cccc----ccc--ccccc-cCCCCcccccccccCCCCC-CCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhh
Q 007583 437 GDDI----SNF--SRAED-KDTTSEPVDVECIDNYGGD-DADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEE 508 (597)
Q Consensus 437 ~~~~----~~~--~sa~~-~~gi~eL~~~~~~~~~~e~-~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~ 508 (597)
..+. ... .++.. ..|+-++....... +.+. ..+....+.+.++.+.+.+.++.+++... +.+++++ ++
T Consensus 153 ~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~-e~dd~ll--e~ 228 (689)
T TIGR00484 153 QRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYF-FNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVA-EFDEELM--EK 228 (689)
T ss_pred HHhCCCceeEEeccccCCCceEEEECccceEEe-cccCCCceeeeccCCHHHHHHHHHHHHHHHHHHH-hcCHHHH--HH
Confidence 3221 011 11111 11222222111111 1111 11111111222233333444444544443 2232333 55
Q ss_pred hhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 509 FWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 509 y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
|+++.+++..+....+..+...+.++| |+++||.+|.|++.||++|.+++-.
T Consensus 229 yle~~~~~~~~l~~~l~~~~~~~~~~P----V~~gSa~~~~Gv~~LLd~I~~~lPs 280 (689)
T TIGR00484 229 YLEGEELTIEEIKNAIRKGVLNCEFFP----VLCGSAFKNKGVQLLLDAVVDYLPS 280 (689)
T ss_pred HhCCCCCCHHHHHHHHHHHHhcCCEEE----EEeccccCCccHHHHHHHHHHHCCC
Confidence 666555444444444555555566666 9999999999999999999998764
No 21
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.79 E-value=8.2e-19 Score=195.85 Aligned_cols=237 Identities=17% Similarity=0.059 Sum_probs=141.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC--Cc--------------------ccccccceecCceeEEEecCCceEEEeecc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD--LF--------------------SDARLFATLDPRLKSVVLPSGRKVLLSDTV 353 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~--v~--------------------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTp 353 (597)
..++|+|+|+.|||||||+++|+... +. .+.....|+......+.+ ++..+.++|||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC
Confidence 35799999999999999999997321 10 001112233333344555 67889999999
Q ss_pred cccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-cc
Q 007583 354 GFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DV 432 (597)
Q Consensus 354 G~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~ 432 (597)
|+.. + ...+...+..+|++++|+|++++ ...+...+++.+...++ |+|+++||+|+...... .+
T Consensus 88 G~~d-----f---~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~~~i------Piiv~iNK~D~~~a~~~~~l 152 (526)
T PRK00741 88 GHED-----F---SEDTYRTLTAVDSALMVIDAAKG-VEPQTRKLMEVCRLRDT------PIFTFINKLDRDGREPLELL 152 (526)
T ss_pred Cchh-----h---HHHHHHHHHHCCEEEEEEecCCC-CCHHHHHHHHHHHhcCC------CEEEEEECCcccccCHHHHH
Confidence 9932 1 12345567789999999999886 45566677777766665 99999999999875532 13
Q ss_pred ccccccc----cccccccc---ccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCc
Q 007583 433 EYIDGDD----ISNFSRAE---DKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNV 505 (597)
Q Consensus 433 ~~i~~~~----~~~~~sa~---~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~ 505 (597)
+++...+ .+...+.+ ...|+-++.+...+.+....+... .+.+.+.+.++++++.|++++.-
T Consensus 153 ~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~-------~~~e~~~~~dd~lle~~l~~~~~---- 221 (526)
T PRK00741 153 DEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTI-------QEVEIIKGLDNPELDELLGEDLA---- 221 (526)
T ss_pred HHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcc-------eeeeeccCCCHHHHHHHhcccHH----
Confidence 4443333 11222222 233444443333332211111000 12345666778888888764421
Q ss_pred hhhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 506 EEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 506 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
++..+..+..+.........+...|.++| |+|+||++|.||++||++|.+.+-.
T Consensus 222 -~~l~~~lel~~~~~~~~~~~~~~~~~~~P----V~~GSA~~n~Gv~~LLd~i~~~~P~ 275 (526)
T PRK00741 222 -EQLREELELVQGASNEFDLEAFLAGELTP----VFFGSALNNFGVQEFLDAFVEWAPA 275 (526)
T ss_pred -HHHHHHHHhhhhcccchhHHHHhcCCeEE----EEEeecccCcCHHHHHHHHHHHCCC
Confidence 11221111111111112234455566655 9999999999999999999999865
No 22
>PRK00007 elongation factor G; Reviewed
Probab=99.79 E-value=7.9e-19 Score=202.50 Aligned_cols=246 Identities=18% Similarity=0.134 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHc---CCCc---------------ccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSD---SDLF---------------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g---~~v~---------------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
.+++|+|+|+.|+|||||+|+|+. .... .+...+.|.+.....+.+ .+..+.++||||+..
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence 578999999999999999999973 2100 113456677777777777 788999999999842
Q ss_pred cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccccc-ccccc
Q 007583 358 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~~-~~~i~ 436 (597)
....+...+..+|++++|+|+..+ ...+...++..+...++ |+|+++||+|+..++... ++++.
T Consensus 88 --------f~~ev~~al~~~D~~vlVvda~~g-~~~qt~~~~~~~~~~~~------p~iv~vNK~D~~~~~~~~~~~~i~ 152 (693)
T PRK00007 88 --------FTIEVERSLRVLDGAVAVFDAVGG-VEPQSETVWRQADKYKV------PRIAFVNKMDRTGADFYRVVEQIK 152 (693)
T ss_pred --------HHHHHHHHHHHcCEEEEEEECCCC-cchhhHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHH
Confidence 112355667789999999999877 56667777888888876 889999999998755321 34443
Q ss_pred ccccc------cccccccc-CCCCcccccccccCCCCC-CCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhh
Q 007583 437 GDDIS------NFSRAEDK-DTTSEPVDVECIDNYGGD-DADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEE 508 (597)
Q Consensus 437 ~~~~~------~~~sa~~~-~gi~eL~~~~~~~~~~e~-~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~ 508 (597)
..+.. ...++..+ .|+.++.......+.... +........+....+.+.+....+++...+ .+++++ ++
T Consensus 153 ~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e-~dd~ll--e~ 229 (693)
T PRK00007 153 DRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAE-ADEELM--EK 229 (693)
T ss_pred HHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHc-cCHHHH--HH
Confidence 33211 11222221 223333222211110000 000100111112223333334444444432 232233 55
Q ss_pred hhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 509 FWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 509 y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
|+++.+++..+....++.+...+.++| |+++||.+|.|+..||++|.+++..
T Consensus 230 yle~~~l~~~~l~~~l~~~~~~~~~~P----v~~gSa~~~~Gv~~LLd~I~~~lPs 281 (693)
T PRK00007 230 YLEGEELTEEEIKAALRKATIANEIVP----VLCGSAFKNKGVQPLLDAVVDYLPS 281 (693)
T ss_pred HhCcCCCCHHHHHHHHHHHHhcCcEEE----EEecccccCcCHHHHHHHHHHHCCC
Confidence 666655555555555666666666666 9999999999999999999998754
No 23
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.79 E-value=1.2e-18 Score=169.50 Aligned_cols=115 Identities=26% Similarity=0.395 Sum_probs=86.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc------------------ccccccceecCceeEEE-ecCCceEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF------------------SDARLFATLDPRLKSVV-LPSGRKVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~------------------~~~~~f~Tld~t~~~i~-l~~g~~i~LiDTpG~i 356 (597)
..++|+++|+.++|||||+++|++.... .+.....|.+....... ..++..+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999964421 11223445555555555 1377899999999992
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
.....+...+..+|++++|+|+.++ ...+....+..+...++ |+|+|+||+|+.
T Consensus 82 --------~f~~~~~~~~~~~D~ailvVda~~g-~~~~~~~~l~~~~~~~~------p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 --------DFIKEMIRGLRQADIAILVVDANDG-IQPQTEEHLKILRELGI------PIIVVLNKMDLI 135 (188)
T ss_dssp --------HHHHHHHHHHTTSSEEEEEEETTTB-STHHHHHHHHHHHHTT-------SEEEEEETCTSS
T ss_pred --------ceeecccceecccccceeeeecccc-ccccccccccccccccc------ceEEeeeeccch
Confidence 2234566678889999999999987 55667777788888887 899999999998
No 24
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=3.8e-18 Score=180.43 Aligned_cols=128 Identities=34% Similarity=0.393 Sum_probs=97.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~ 373 (597)
-++.|+|||++|||||||+|+|++....+.+++|+|+.|+.+.+.+.++..+.++||||++..... .+.. ..+++
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~---~flrh 232 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGH---RFLKH 232 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHH---HHHHH
Confidence 357899999999999999999999877788889999999999998855589999999999754322 2322 33566
Q ss_pred HHhcCEEEEEEeCCCC---ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAP---NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~---~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|+++. ...+....+.+.|....- ....+|+|+|+||+|+...
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-ELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-hhccCCEEEEEeCccCCCh
Confidence 7789999999999865 344555555555555421 1123699999999998643
No 25
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=7.2e-18 Score=183.25 Aligned_cols=124 Identities=30% Similarity=0.379 Sum_probs=95.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~l 374 (597)
++-|+|||++|||||||||+|++....+.+++|+|+.|..+.+.+.++..+.++||||++..... .+.. ..+.++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~---~fLrhi 234 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGH---QFLRHI 234 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHH---HHHHHH
Confidence 45999999999999999999999887778899999999999888855889999999999764322 2222 336667
Q ss_pred HhcCEEEEEEeCCCC---ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 375 VEADLLVHVLDCTAP---NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 375 ~~aDliL~VvDas~~---~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
..+++++||+|+++. ...+....+.+.|..... ....+|+|+|+||+|+
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-RLLERPQIVVANKMDL 286 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch-hccCCcEEEEEeCCCC
Confidence 789999999999753 334455556666665431 1234699999999997
No 26
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=4.2e-18 Score=187.56 Aligned_cols=129 Identities=28% Similarity=0.337 Sum_probs=94.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
-...|+|||++|||||||||+|++....+.+++|+|+.|..+.+.+ .+..+.++||||++...... ...-...+.++.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g-~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEG-KGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE-CCeEEEEEECCCCccccchh-hHHHHHHHHHHH
Confidence 4679999999999999999999998877888999999999998887 66789999999997532221 011123466778
Q ss_pred hcCEEEEEEeCCCC----ChHHHHHHHHHHHHHcCC--------CccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAP----NLEEHRTTVLQVLQQVGV--------SEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~----~~~~~~~~v~~iL~~lgi--------~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|+++||+|+++. ........+...|..+.. .....+|+|+|+||+|+.+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 89999999999752 123344444444443321 0223469999999999864
No 27
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=1.3e-17 Score=157.42 Aligned_cols=125 Identities=36% Similarity=0.425 Sum_probs=89.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~l~~ 376 (597)
.|+++|++|||||||+|+|++....+...++.|.++..+.+.+.+...+.++||||+...... .+. ...+..+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~---~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG---HRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCch---HHHHHHHHh
Confidence 589999999999999999998776555667778888888777633348999999998542211 122 233445667
Q ss_pred cCEEEEEEeCCCC-ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 377 ADLLVHVLDCTAP-NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 377 aDliL~VvDas~~-~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+|++++|+|++++ ........+.+.+..... ....+|+++|+||+|+.+.
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNP-ELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc-cccccccEEEEEchhcCCc
Confidence 9999999999987 455555555565655431 1123599999999998653
No 28
>PRK12739 elongation factor G; Reviewed
Probab=99.76 E-value=4.1e-18 Score=196.59 Aligned_cols=245 Identities=18% Similarity=0.161 Sum_probs=147.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC------------------cccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL------------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v------------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
.+++|+|+|+.|+|||||+++|+...- ..+...+.|++.....+.+ ++..+.++||||+..
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHH
Confidence 578999999999999999999975311 1112456677776767777 788999999999842
Q ss_pred cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-cccccc
Q 007583 358 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~ 436 (597)
+ ...+...+..+|++++|+|+..+ ...+...++..+...++ |+|+++||+|+...+.. .++++.
T Consensus 86 -----f---~~e~~~al~~~D~~ilVvDa~~g-~~~qt~~i~~~~~~~~~------p~iv~iNK~D~~~~~~~~~~~~i~ 150 (691)
T PRK12739 86 -----F---TIEVERSLRVLDGAVAVFDAVSG-VEPQSETVWRQADKYGV------PRIVFVNKMDRIGADFFRSVEQIK 150 (691)
T ss_pred -----H---HHHHHHHHHHhCeEEEEEeCCCC-CCHHHHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHH
Confidence 1 22456667789999999999887 45666677777777775 89999999999865422 133333
Q ss_pred ccccc----cc--ccccc-cCCCCcccccccccCCCCC--CCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchh
Q 007583 437 GDDIS----NF--SRAED-KDTTSEPVDVECIDNYGGD--DADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEE 507 (597)
Q Consensus 437 ~~~~~----~~--~sa~~-~~gi~eL~~~~~~~~~~e~--~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~ 507 (597)
..+.. .. .++.. ..|+-++.+.... .+.+. +........+..+.+.+.+....+++...+ .+++++ +
T Consensus 151 ~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e-~dd~ll--e 226 (691)
T PRK12739 151 DRLGANAVPIQLPIGAEDDFKGVIDLIKMKAI-IWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAE-VDEELM--E 226 (691)
T ss_pred HHhCCCceeEEecccccccceEEEEcchhhhh-hccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhh-cCHHHH--H
Confidence 22210 00 11111 1112222111111 11110 000000111112223333333444444432 222233 5
Q ss_pred hhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 508 EFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 508 ~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
+|+++.+++..+....+......+.++| |+++||.+|.|+..||++|.+++..
T Consensus 227 ~yl~~~~~~~~~l~~~l~~~~~~~~~~P----v~~gSa~~~~Gv~~LLd~I~~~lPs 279 (691)
T PRK12739 227 KYLEGEEITEEEIKAAIRKATINMEFFP----VLCGSAFKNKGVQPLLDAVVDYLPS 279 (691)
T ss_pred HHhccCCCCHHHHHHHHHHHHHcCCEEE----EEeccccCCccHHHHHHHHHHHCCC
Confidence 6666665555455555666666666666 9999999999999999999998754
No 29
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=3.3e-18 Score=174.62 Aligned_cols=127 Identities=28% Similarity=0.339 Sum_probs=102.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~ 373 (597)
-++.|++||+||||||||+|+|+.....+.++.|+|+.|.++.+.+.+..++.+.|.||+|..... .+.-.| +.+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~F---LrH 271 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKF---LRH 271 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHH---HHH
Confidence 467899999999999999999999998999999999999999998877777999999999976433 233344 788
Q ss_pred HHhcCEEEEEEeCCCC---ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAP---NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~---~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..|+.+++|+|++.+ ..-++.+.++..|+.++- ....+|.++|+||+|+.+
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek-~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK-GLADRPALIVANKIDLPE 326 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh-hhccCceEEEEeccCchh
Confidence 8899999999999987 445555555555555432 223469999999999863
No 30
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.75 E-value=1.9e-17 Score=156.19 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHH-H
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEV-V 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l-~ 375 (597)
|+|+++|++|+|||||+|+|++.........+.|..+....... .+..+.+|||||+... +......+ ..+.... .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDR-PLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCc-cccCCchHHHHHHHHHHh
Confidence 58999999999999999999998765555567677666666555 5678999999998532 11000011 1122222 2
Q ss_pred hcCEEEEEEeCCCCChH--HHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLE--EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~--~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|+++.... .....+...+.... ...|+|+|+||+|+..
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF----KNKPVIVVLNKIDLLT 127 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc----CcCCeEEEEEccccCc
Confidence 36899999999875321 22222333333221 1359999999999864
No 31
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.74 E-value=6.5e-17 Score=152.11 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec--CCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~--~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
|+|+++|++|+|||||+|+|++.........+.|.+.....+... .+..+.++||||+... .......+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~ 72 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF--------TNMRARGAS 72 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH--------HHHHHHHHh
Confidence 579999999999999999999877554444455555444444442 3678999999998321 112233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++... +.......+...+ .|+++|+||+|+..
T Consensus 73 ~~d~il~v~d~~~~~~~-~~~~~~~~~~~~~------~p~ivv~NK~Dl~~ 116 (168)
T cd01887 73 LTDIAILVVAADDGVMP-QTIEAIKLAKAAN------VPFIVALNKIDKPN 116 (168)
T ss_pred hcCEEEEEEECCCCccH-HHHHHHHHHHHcC------CCEEEEEEceeccc
Confidence 79999999999876432 2333334455544 38999999999864
No 32
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=5.2e-17 Score=172.60 Aligned_cols=121 Identities=23% Similarity=0.328 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCceeEEEecCCceEEEeecccccccchhhHHH-HHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVD-AFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve-~f~sTl~~l 374 (597)
...|+++|.+|+|||||+|+|+|..+.. ...+.+|.+...+.+.. ++.++.+|||||+..... .+.. ..+.+...+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~-~l~~~~~r~~~~~l 129 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG-SLEKAMVRCAWSSL 129 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc-cHHHHHHHHHHHHh
Confidence 4689999999999999999999987543 33445555544455555 678899999999864321 2222 234455667
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++.+ .......+.+.+...+ .|.|+|+||+|+.+
T Consensus 130 ~~aDvil~VvD~~~s-~~~~~~~il~~l~~~~------~p~IlViNKiDl~~ 174 (339)
T PRK15494 130 HSADLVLLIIDSLKS-FDDITHNILDKLRSLN------IVPIFLLNKIDIES 174 (339)
T ss_pred hhCCEEEEEEECCCC-CCHHHHHHHHHHHhcC------CCEEEEEEhhcCcc
Confidence 889999999998764 3333344555555544 37789999999853
No 33
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=6.1e-17 Score=168.14 Aligned_cols=122 Identities=28% Similarity=0.356 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~ 375 (597)
...|+|+|++|||||||+|+|+|..+........|+......+...++.++.++||||+.... ..+...+ ..+...+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~-~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK-RALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch-hHHHHHHHHHHHHHHh
Confidence 468999999999999999999998865544444444444444444456789999999986532 1222222 34556677
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++ .......+.+.+...+ .|+++|+||+|+..
T Consensus 84 ~~D~il~vvd~~~~-~~~~~~~i~~~l~~~~------~pvilVlNKiDl~~ 127 (292)
T PRK00089 84 DVDLVLFVVDADEK-IGPGDEFILEKLKKVK------TPVILVLNKIDLVK 127 (292)
T ss_pred cCCEEEEEEeCCCC-CChhHHHHHHHHhhcC------CCEEEEEECCcCCC
Confidence 89999999999874 2333444445554333 49999999999874
No 34
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=6.4e-17 Score=151.13 Aligned_cols=114 Identities=25% Similarity=0.365 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEV 374 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l 374 (597)
+|+++|++|||||||+|+|++... ........|.+.....+.+.++..+.+|||||+. .| ..+...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~---------~~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE---------KFIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH---------HHHHHHHhhh
Confidence 699999999999999999998532 1222344566665555665437789999999982 23 3344567
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++.. .+.......+...+. +|+++|+||+|+...
T Consensus 73 ~~ad~ii~V~d~~~~~~-~~~~~~~~~~~~~~~-----~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 73 GGIDLVLLVVAADEGIM-PQTREHLEILELLGI-----KRGLVVLTKADLVDE 119 (164)
T ss_pred hcCCEEEEEEECCCCcc-HhHHHHHHHHHHhCC-----CcEEEEEECccccCH
Confidence 78999999999987422 222223334444442 389999999998653
No 35
>PRK13351 elongation factor G; Reviewed
Probab=99.73 E-value=2.3e-17 Score=190.57 Aligned_cols=245 Identities=16% Similarity=0.142 Sum_probs=143.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc------------------ccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF------------------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~------------------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
.+++|+|+|+.|+|||||+++|+...-. .+.....|+......+.+ .+..+.+|||||+..
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 4689999999999999999999853210 001233444444555666 678999999999942
Q ss_pred cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-cccccc
Q 007583 358 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~ 436 (597)
....+...+..+|++++|+|++.+. ..+...++..+...++ |+++|+||+|+...+.. .++++.
T Consensus 86 --------f~~~~~~~l~~aD~~ilVvd~~~~~-~~~~~~~~~~~~~~~~------p~iiviNK~D~~~~~~~~~~~~i~ 150 (687)
T PRK13351 86 --------FTGEVERSLRVLDGAVVVFDAVTGV-QPQTETVWRQADRYGI------PRLIFINKMDRVGADLFKVLEDIE 150 (687)
T ss_pred --------HHHHHHHHHHhCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCC------CEEEEEECCCCCCCCHHHHHHHHH
Confidence 1223455677899999999998863 3344555566666554 89999999999876532 244444
Q ss_pred ccc----ccccccccccC---CCCcccccccccCCCCCCCCC--CCCCcccchhhhhhcccchhhhhhhhcCCCCCCchh
Q 007583 437 GDD----ISNFSRAEDKD---TTSEPVDVECIDNYGGDDADN--NDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEE 507 (597)
Q Consensus 437 ~~~----~~~~~sa~~~~---gi~eL~~~~~~~~~~e~~~~~--~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~ 507 (597)
..+ .....+...+. |+.++.......+ ....... ....++..+.+.+.+....+.+...+ .+++++ +
T Consensus 151 ~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~-~d~~ll--e 226 (687)
T PRK13351 151 ERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHF-SEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAE-FDDELL--E 226 (687)
T ss_pred HHHCCCeEEEEeccccCCceEEEEECccceEEec-ccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHh-cCHHHH--H
Confidence 333 11112222211 1112211111111 0000000 00011122333333344444444432 232333 6
Q ss_pred hhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 508 EFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 508 ~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
+|+++..++..+....+......+.++| |+++||.+|.|++.||++|.+.+..
T Consensus 227 ~~l~~~~l~~~~l~~~~~~~~~~~~~~P----V~~gSA~~~~Gv~~LLd~I~~~lPs 279 (687)
T PRK13351 227 LYLEGEELSAEQLRAPLREGTRSGHLVP----VLFGSALKNIGIEPLLDAVVDYLPS 279 (687)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCEEE----EEecccCcCccHHHHHHHHHHHCCC
Confidence 6776555555555555566666666666 9999999999999999999998755
No 36
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=4.5e-17 Score=174.39 Aligned_cols=125 Identities=26% Similarity=0.366 Sum_probs=99.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhh-HHHHH--HHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQ-LVDAF--HATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~-lve~f--~sTl 371 (597)
....|||+|.||+|||||+|+|+|... .+.+..++|.|+....+.+ ++..+.++||+|.....-.. -.+.| ..|+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 468999999999999999999999885 4455666777776666776 89999999999997653221 12323 5688
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.++..||++++|+|++.+ ..++...+.....+.|. ++|+|+||+|++..+
T Consensus 256 ~aI~~a~vvllviDa~~~-~~~qD~~ia~~i~~~g~------~~vIvvNKWDl~~~~ 305 (444)
T COG1160 256 KAIERADVVLLVIDATEG-ISEQDLRIAGLIEEAGR------GIVIVVNKWDLVEED 305 (444)
T ss_pred hHHhhcCEEEEEEECCCC-chHHHHHHHHHHHHcCC------CeEEEEEccccCCch
Confidence 899999999999999998 56677777777777774 899999999998763
No 37
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=1.9e-16 Score=146.66 Aligned_cols=117 Identities=26% Similarity=0.287 Sum_probs=83.0
Q ss_pred EEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHHhcC
Q 007583 301 AVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVVEAD 378 (597)
Q Consensus 301 aLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~~aD 378 (597)
+++|++|+|||||+|+|++... .....++.|.+........ .+..+.++||||+....+ .+...+ ..+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE-GISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCC
Confidence 5899999999999999998753 3344555665555555555 678899999999976533 222222 33455677899
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++++|+|+.++..... ..+..++...+ .|+++|+||+|+..
T Consensus 79 ~ii~v~d~~~~~~~~~-~~~~~~~~~~~------~piiiv~nK~D~~~ 119 (157)
T cd01894 79 VILFVVDGREGLTPAD-EEIAKYLRKSK------KPVILVVNKVDNIK 119 (157)
T ss_pred EEEEEEeccccCCccH-HHHHHHHHhcC------CCEEEEEECcccCC
Confidence 9999999987533332 34556666655 39999999999864
No 38
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=8.6e-17 Score=166.16 Aligned_cols=128 Identities=34% Similarity=0.388 Sum_probs=104.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~l 374 (597)
+.-|++||.||||||||+++++.....+.+++|+|+.|..+.+....+..+++.|.||+|+.... .+...| +.++
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~F---LrHI 235 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRF---LRHI 235 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHH---HHHH
Confidence 46799999999999999999999999999999999999999999877788999999999976433 343445 7888
Q ss_pred HhcCEEEEEEeCCCCC---hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 375 VEADLLVHVLDCTAPN---LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 375 ~~aDliL~VvDas~~~---~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+-+++||+|++... ..+....+...|+.++. ....+|.++|+||||++.+.
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-~L~~K~~ivv~NKiD~~~~~ 291 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-KLAEKPRIVVLNKIDLPLDE 291 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-HhccCceEEEEeccCCCcCH
Confidence 8899999999998543 46677777777777653 22346999999999976543
No 39
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=1.5e-16 Score=176.16 Aligned_cols=123 Identities=27% Similarity=0.397 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhH-HHHHH--HhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQL-VDAFH--ATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~l-ve~f~--sTl 371 (597)
+.++|+++|++|+|||||+|+|++... .....+++|.++....+.+ ++..+.+|||||+........ .+.+. .+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 468999999999999999999999864 3455677777776666666 788899999999865432211 22332 234
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+..+|++++|+|++++....... +...+...+ +|+|+|+||+|+..
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~~------~piIiV~NK~Dl~~ 336 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEAG------RALVLAFNKWDLVD 336 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHcC------CCEEEEEECcccCC
Confidence 5678899999999999875544433 334444333 49999999999975
No 40
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=1.4e-16 Score=179.78 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-----------------CCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-----------------SGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-----------------~g~~i~LiDTpG~i~~ 358 (597)
+.|.|+++|++|+|||||+|+|++..+........|.+.....+... ....+.+|||||+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~--- 79 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH--- 79 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc---
Confidence 46999999999999999999999986543322222221111111110 0023789999998
Q ss_pred chhhHHHHHHH-hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 359 LPLQLVDAFHA-TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 359 lp~~lve~f~s-Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+.|.. ....+..+|++++|+|++++... +......++...++ |+|+|+||+|+...
T Consensus 80 ------e~f~~l~~~~~~~aD~~IlVvD~~~g~~~-qt~e~i~~l~~~~v------piIVv~NK~Dl~~~ 136 (590)
T TIGR00491 80 ------EAFTNLRKRGGALADLAILIVDINEGFKP-QTQEALNILRMYKT------PFVVAANKIDRIPG 136 (590)
T ss_pred ------HhHHHHHHHHHhhCCEEEEEEECCcCCCH-hHHHHHHHHHHcCC------CEEEEEECCCccch
Confidence 33322 33456789999999999876333 33333455555443 89999999999753
No 41
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.71 E-value=1e-15 Score=167.89 Aligned_cols=146 Identities=24% Similarity=0.305 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeE
Q 007583 260 RILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKS 338 (597)
Q Consensus 260 ~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~ 338 (597)
.+..++..+..+|+++-... .+ .+.+ ...+|+++|++|+|||||+|+|++... .+.+.+++|.+.....
T Consensus 176 ~~~~~l~~~~~~l~~ll~~~--~~-~~~~-------~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~ 245 (442)
T TIGR00450 176 SLNQLLLSIIAELKDILNSY--KL-EKLD-------DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGD 245 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HH-HHhh-------cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEE
Confidence 56666667767777665543 11 2221 347899999999999999999999764 4556677777766666
Q ss_pred EEecCCceEEEeecccccccchhhHHHHH--HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEE
Q 007583 339 VVLPSGRKVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI 416 (597)
Q Consensus 339 i~l~~g~~i~LiDTpG~i~~lp~~lve~f--~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~I 416 (597)
+.+ +|..+.+|||||+... .+..+.+ ..+...+..+|++++|+|++++...... +...+... ..|+|
T Consensus 246 i~~-~g~~v~l~DTaG~~~~--~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------~~piI 314 (442)
T TIGR00450 246 FEL-NGILIKLLDTAGIREH--ADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS------KKPFI 314 (442)
T ss_pred EEE-CCEEEEEeeCCCcccc--hhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC------CCCEE
Confidence 776 7888999999998542 2222322 3456778889999999999876443332 22222221 24999
Q ss_pred EEEecCCCCC
Q 007583 417 EVWNKIDYHD 426 (597)
Q Consensus 417 iVlNKiDl~~ 426 (597)
+|+||+|+..
T Consensus 315 lV~NK~Dl~~ 324 (442)
T TIGR00450 315 LVLNKIDLKI 324 (442)
T ss_pred EEEECccCCC
Confidence 9999999853
No 42
>PRK09866 hypothetical protein; Provisional
Probab=99.71 E-value=3.3e-16 Score=173.81 Aligned_cols=61 Identities=28% Similarity=0.486 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCCccc-cccccee
Q 007583 254 LQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATL 332 (597)
Q Consensus 254 ~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-~~~f~Tl 332 (597)
+..+||.|+++|..|+++|+++++.+ ++++|+|++|+|||||+|+|+|..+... +.+++++
T Consensus 44 ~~~drR~i~~ri~~L~~~L~Kv~~~~------------------~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 44 LPWSQPNIAERHAMLNNELRKISRLE------------------MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhccc------------------eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 45689999999999999999997642 8999999999999999999999876544 4444443
No 43
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=4.4e-16 Score=144.28 Aligned_cols=122 Identities=26% Similarity=0.359 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~ 375 (597)
..+|+++|++|||||||+|+|++..+........+............+..+.++||||+....... .+.+ ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL-GERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH-HHHHHHHHHHHHH
Confidence 478999999999999999999998753332222232332333333355788999999986432211 1222 22344567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++ .......+.+.+...+. |+++|+||+|+..
T Consensus 82 ~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~~~------~~iiv~nK~Dl~~ 125 (168)
T cd04163 82 DVDLVLFVVDASEP-IGEGDEFILELLKKSKT------PVILVLNKIDLVK 125 (168)
T ss_pred hCCEEEEEEECCCc-cCchHHHHHHHHHHhCC------CEEEEEEchhccc
Confidence 89999999999886 23333444455555433 8999999999864
No 44
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.70 E-value=3.4e-16 Score=152.50 Aligned_cols=114 Identities=27% Similarity=0.305 Sum_probs=76.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-------CcccccccceecCceeEEEec-------------CCceEEEeeccccccc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD-------LFSDARLFATLDPRLKSVVLP-------------SGRKVLLSDTVGFISD 358 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~-------v~~~~~~f~Tld~t~~~i~l~-------------~g~~i~LiDTpG~i~~ 358 (597)
+|+++|++|+|||||+++|++.. ...+.....|.+.....+.+. .+..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 69999999999999999999731 122333455666655555442 25688999999982
Q ss_pred chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 359 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+ ..........+|++++|+|++++...... ....++...+ .|+++|+||+|+...
T Consensus 80 ---~~---~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~~~~~~~------~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 80 ---SL---IRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLVIGEILC------KKLIVVLNKIDLIPE 135 (192)
T ss_pred ---HH---HHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHHHHHHcC------CCEEEEEECcccCCH
Confidence 11 23344556679999999999875332222 2223333333 389999999998743
No 45
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.70 E-value=8.1e-16 Score=142.15 Aligned_cols=119 Identities=29% Similarity=0.262 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
..|+++|++|+|||||+|+|++... .....++.|.+.......+ .+.++.++||||+...........+..+...+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 4799999999999999999998764 2344455555555555555 6778999999998654322111223445666778
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++.+........+ .. ....|+++|+||+|+.+
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~----~~-----~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEIL----EL-----PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHH----Hh-----hcCCCEEEEEEchhcCC
Confidence 9999999999976444433322 21 11249999999999864
No 46
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=5.1e-16 Score=159.89 Aligned_cols=160 Identities=21% Similarity=0.241 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeE
Q 007583 259 RRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKS 338 (597)
Q Consensus 259 r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~ 338 (597)
-+++..++++...|+-+.+.|...++- .....+.|+|.|.||||+|||||+++|++....+.+++|+|-...+|+
T Consensus 135 GR~aSiik~i~~~L~fL~~~r~~l~~L-----P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGh 209 (346)
T COG1084 135 GRVASIIKKIDDDLEFLRKARDHLKKL-----PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGH 209 (346)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC-----CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEee
Confidence 366667777777888888776554422 123457899999999999999999999999999999999999999999
Q ss_pred EEecCCceEEEeecccccccchhhHHHHHHHhHHHHH-hcCEEEEEEeCCCC---ChHHHHHHHHHHHHHcCCCccCCCc
Q 007583 339 VVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV-EADLLVHVLDCTAP---NLEEHRTTVLQVLQQVGVSEEKLKN 414 (597)
Q Consensus 339 i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~-~aDliL~VvDas~~---~~~~~~~~v~~iL~~lgi~~~~~~P 414 (597)
+.. ++.++.++||||+.+.--.+...--++...++. -.++++|++|.|.. ..+.|..-+.++-..++ .|
T Consensus 210 fe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~------~p 282 (346)
T COG1084 210 FER-GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK------AP 282 (346)
T ss_pred eec-CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC------CC
Confidence 987 888999999999975422232222233334444 36789999999753 23444444444433333 39
Q ss_pred EEEEEecCCCCCcccc
Q 007583 415 MIEVWNKIDYHDEEMG 430 (597)
Q Consensus 415 ~IiVlNKiDl~~~~~~ 430 (597)
+++|+||+|..+.+..
T Consensus 283 ~v~V~nK~D~~~~e~~ 298 (346)
T COG1084 283 IVVVINKIDIADEEKL 298 (346)
T ss_pred eEEEEecccccchhHH
Confidence 9999999999866543
No 47
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.70 E-value=2.4e-16 Score=176.20 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC--Cc----c----------------cccccceecCceeEEEecCCceEEEeecc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD--LF----S----------------DARLFATLDPRLKSVVLPSGRKVLLSDTV 353 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~--v~----~----------------~~~~f~Tld~t~~~i~l~~g~~i~LiDTp 353 (597)
+.++|+|+|+.|||||||+++|+... +. + +.....|.......+.+ ++..+.++|||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC
Confidence 35799999999999999999986321 10 0 01112233333344444 67889999999
Q ss_pred cccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 354 GFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 354 G~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
|+. ++ ...+...+..+|++++|+|++.+ ...+...+++.+...++ |+|+|+||+|+...+
T Consensus 89 G~~-----df---~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~~~~------PiivviNKiD~~~~~ 148 (527)
T TIGR00503 89 GHE-----DF---SEDTYRTLTAVDNCLMVIDAAKG-VETRTRKLMEVTRLRDT------PIFTFMNKLDRDIRD 148 (527)
T ss_pred Chh-----hH---HHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHhcCC------CEEEEEECccccCCC
Confidence 992 11 13355667789999999999876 55566667777665543 999999999997544
No 48
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=4.5e-16 Score=169.94 Aligned_cols=122 Identities=30% Similarity=0.358 Sum_probs=89.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchh-hHHHHH--HHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL-QLVDAF--HATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~-~lve~f--~sTl 371 (597)
+..+|+++|.+|+|||||+|+|++... ...+.+++|.++....+.. ++..+.++||||+...... ...+.+ ..++
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 458999999999999999999999764 3455666777766666655 6779999999998654221 112333 3456
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
..+..+|++++|+|++++... +...+...+...+ +|+|+|+||+|+.
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~-~~~~~~~~~~~~~------~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITE-QDLRIAGLILEAG------KALVIVVNKWDLV 296 (429)
T ss_pred HHHHhCCEEEEEEECCCCccH-HHHHHHHHHHHcC------CcEEEEEECcccC
Confidence 778899999999999987443 3344445554444 3999999999987
No 49
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=5.2e-16 Score=169.45 Aligned_cols=119 Identities=29% Similarity=0.315 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~~ 376 (597)
+|+|+|.+|+|||||+|+|++... ...+.++.|.+.....+.+ ++..+.++||||+... ...+.+.+ ..+...+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED-DDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc-chhHHHHHHHHHHHHHhh
Confidence 489999999999999999999764 3456677777777777777 7888999999998532 22333333 456777888
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|+..+.. .....+.++|.+.+ +|+++|+||+|+..
T Consensus 79 ad~vl~vvD~~~~~~-~~d~~i~~~l~~~~------~piilVvNK~D~~~ 121 (429)
T TIGR03594 79 ADVILFVVDGREGLT-PEDEEIAKWLRKSG------KPVILVANKIDGKK 121 (429)
T ss_pred CCEEEEEEeCCCCCC-HHHHHHHHHHHHhC------CCEEEEEECccCCc
Confidence 999999999988633 34445667777755 39999999999864
No 50
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=6.4e-16 Score=171.24 Aligned_cols=122 Identities=30% Similarity=0.300 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~ 373 (597)
+.|+|+|||.+|+|||||+|+|++.... ..+.++.|.+.....+.+ ++..+.+|||||+... ...+...+ ..+...
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD-AKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc-chhHHHHHHHHHHHH
Confidence 4689999999999999999999997643 345566666666666666 7788999999998532 12233333 335556
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..||++++|+|++++.... ...+.+++...+ +|+|+|+||+|+..
T Consensus 115 ~~~aD~il~VvD~~~~~s~~-~~~i~~~l~~~~------~piilV~NK~Dl~~ 160 (472)
T PRK03003 115 MRTADAVLFVVDATVGATAT-DEAVARVLRRSG------KPVILAANKVDDER 160 (472)
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHcC------CCEEEEEECccCCc
Confidence 78899999999999864333 345566666543 49999999999853
No 51
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.69 E-value=6.5e-16 Score=155.97 Aligned_cols=137 Identities=28% Similarity=0.316 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
+|+|+|++|+|||||+|+|+|....+...+|+|.++..+.+.+ ++..+.++||||+++..+... ......+..+..+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGK-GRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccch-hHHHHHHHhhccCC
Confidence 6899999999999999999998767777889998888887777 788999999999875432221 22233456678899
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcE----------EEEEecCCCCCccccccccccccc
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM----------IEVWNKIDYHDEEMGDVEYIDGDD 439 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~----------IiVlNKiDl~~~~~~~~~~i~~~~ 439 (597)
++++|+|++++ ..+...+.+.|+..|+......|. |-+.+++|+.+.....+..+..++
T Consensus 80 ~il~V~D~t~~--~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~ 148 (233)
T cd01896 80 LILMVLDATKP--EGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREY 148 (233)
T ss_pred EEEEEecCCcc--hhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHh
Confidence 99999999864 457777889999999853333332 234456777665544344444443
No 52
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.69 E-value=3.9e-16 Score=145.14 Aligned_cols=115 Identities=24% Similarity=0.277 Sum_probs=79.2
Q ss_pred EEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHhcCEE
Q 007583 302 VVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLL 380 (597)
Q Consensus 302 LVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aDli 380 (597)
|+|++|+|||||+|+|++........+++|.+.....+.+ ++..+.++||||+....+......+.. .+.. ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 5899999999999999998655566677788877777777 567899999999864332221112211 1111 479999
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 381 VHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 381 L~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
++|+|++++. . ...+...+...+ +|+++|+||+|+.+.
T Consensus 79 i~v~d~~~~~--~-~~~~~~~~~~~~------~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 79 VNVVDATNLE--R-NLYLTLQLLELG------LPVVVALNMIDEAEK 116 (158)
T ss_pred EEEeeCCcch--h-HHHHHHHHHHcC------CCEEEEEehhhhccc
Confidence 9999998752 1 122223333333 499999999998643
No 53
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=3.3e-16 Score=154.53 Aligned_cols=115 Identities=25% Similarity=0.282 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEEEec--------------------------CC-----
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLP--------------------------SG----- 344 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i~l~--------------------------~g----- 344 (597)
+|+++|++|+|||||+++|++... ..+.....|+........+. .+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 799999999999999999998631 11112222322221111110 02
Q ss_pred -ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 345 -RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 345 -~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
..+.+|||||+. . .....+..+..+|++++|+|++.+....+....+..+...++ +|+|+|+||+|
T Consensus 82 ~~~i~~iDtPG~~-----~---~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~-----~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGHE-----I---LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGL-----KHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCChH-----H---HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCC-----CcEEEEEEchh
Confidence 678999999972 1 224456677789999999999875333333334455555554 37899999999
Q ss_pred CCC
Q 007583 424 YHD 426 (597)
Q Consensus 424 l~~ 426 (597)
+.+
T Consensus 149 l~~ 151 (203)
T cd01888 149 LVK 151 (203)
T ss_pred ccC
Confidence 865
No 54
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=5.1e-16 Score=169.95 Aligned_cols=123 Identities=26% Similarity=0.310 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhh-HHHHH--HHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQ-LVDAF--HATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~-lve~f--~sTl 371 (597)
...+|+++|++|+|||||+|+|++... .....+++|.+.....+.. ++..+.++||||+....... ..+.+ ..++
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 458999999999999999999999874 3444555565554444444 78889999999986543322 12322 3466
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+..+|++++|+|++.+.. .+...+...+...+ +|+|+|+||+|+.+
T Consensus 251 ~~~~~ad~~ilViD~~~~~~-~~~~~i~~~~~~~~------~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 251 KAIERADVVLLVIDATEGIT-EQDLRIAGLALEAG------RALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCC-HHHHHHHHHHHHcC------CcEEEEEECccCCC
Confidence 77889999999999998744 34444555555544 38999999999873
No 55
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.68 E-value=1.2e-15 Score=151.43 Aligned_cols=120 Identities=21% Similarity=0.169 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|++|+|||||+++|++........+..+.+.....+.++++ ..+.+|||+|... +..+. -..+..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~--~~~l~------~~~~~~ 73 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI--GGKML------DKYIYG 73 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH--HHHHH------HHHhhc
Confidence 6899999999999999999987654444444555655566666443 4678999999722 12222 223668
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++...+....+...+...........|+|+|+||+|+..
T Consensus 74 ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 74 AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 99999999999875555555555656554322122347999999999853
No 56
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.8e-16 Score=169.01 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec--CCceEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--SGRKVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~--~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
+.|+|+++||...|||||+..|-+.++.....-+.|.......+.++ +...+.++||||| ++|.+ ..+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH---------eAFt~mRaR 74 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH---------EAFTAMRAR 74 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH---------HHHHHHHhc
Confidence 56999999999999999999999999877777777776666666665 3478999999999 67743 445
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
...-+|++++|+|+.++ ...|+....+.++..+. |+|+++||+|+++.+
T Consensus 75 Ga~vtDIaILVVa~dDG-v~pQTiEAI~hak~a~v------P~iVAiNKiDk~~~n 123 (509)
T COG0532 75 GASVTDIAILVVAADDG-VMPQTIEAINHAKAAGV------PIVVAINKIDKPEAN 123 (509)
T ss_pred CCccccEEEEEEEccCC-cchhHHHHHHHHHHCCC------CEEEEEecccCCCCC
Confidence 66779999999999998 55666666688888887 999999999998554
No 57
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=6.5e-16 Score=178.99 Aligned_cols=123 Identities=27% Similarity=0.393 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhH-HHHHH--HhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQL-VDAFH--ATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~l-ve~f~--sTl 371 (597)
+.++|+++|++|+|||||+|+|++... .+.+.+++|.++....+.+ ++..+.++||||+........ .+.+. .+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999999874 3456677777776655666 788899999999865432221 12232 245
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+..+|++++|+|++++...... .+...+...+ +|+|+|+||+|+.+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~-~i~~~~~~~~------~piIiV~NK~DL~~ 575 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDL-KVMSMAVDAG------RALVLVFNKWDLMD 575 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHH-HHHHHHHHcC------CCEEEEEEchhcCC
Confidence 567889999999999987544433 3444444444 49999999999865
No 58
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.67 E-value=6e-16 Score=146.46 Aligned_cols=123 Identities=31% Similarity=0.422 Sum_probs=83.7
Q ss_pred EEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHHHHhcCE
Q 007583 302 VVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEEVVEADL 379 (597)
Q Consensus 302 LVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~l~~aDl 379 (597)
++|++|||||||+|+|++....+....+.|.++..+.+.+.++..+.++||||+...... .+.. .....+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~---~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGN---QFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccH---HHHHHHhccCE
Confidence 589999999999999999876556677888888887777633889999999998542211 1111 22344667999
Q ss_pred EEEEEeCCCC------ChHHHHHHHHHHHHHcCCC----ccCCCcEEEEEecCCCCCc
Q 007583 380 LVHVLDCTAP------NLEEHRTTVLQVLQQVGVS----EEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 380 iL~VvDas~~------~~~~~~~~v~~iL~~lgi~----~~~~~P~IiVlNKiDl~~~ 427 (597)
+++|+|++++ ........+...+...... ....+|+++|+||+|+...
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 9999999876 2333333333333322110 0123599999999998754
No 59
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.67 E-value=1.1e-15 Score=146.10 Aligned_cols=113 Identities=21% Similarity=0.199 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccc----------------cccceecCceeEEEecCCceEEEeecccccccchhh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDA----------------RLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQ 362 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~----------------~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~ 362 (597)
+|+++|.+|||||||+|+|++....... ....|.+.....+.+ .+..+.++||||+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH-----
Confidence 4899999999999999999987643211 223344444444544 567889999999832
Q ss_pred HHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 363 LVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 363 lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
........+..+|++++|+|++++... ........+...+ .|+++|+||+|+...
T Consensus 75 ---~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~------~~i~iv~nK~D~~~~ 129 (189)
T cd00881 75 ---FSSEVIRGLSVSDGAILVVDANEGVQP-QTREHLRIAREGG------LPIIVAINKIDRVGE 129 (189)
T ss_pred ---HHHHHHHHHHhcCEEEEEEECCCCCcH-HHHHHHHHHHHCC------CCeEEEEECCCCcch
Confidence 112344556689999999999876433 2333334444433 499999999999863
No 60
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.4e-16 Score=179.72 Aligned_cols=245 Identities=19% Similarity=0.127 Sum_probs=163.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCC------------------cccccccceecCceeEEEecCC-ceEEEeecccc
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDL------------------FSDARLFATLDPRLKSVVLPSG-RKVLLSDTVGF 355 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v------------------~~~~~~f~Tld~t~~~i~l~~g-~~i~LiDTpG~ 355 (597)
+++++|+|+||..+|||||..+|+-..- ..+...+.|+......+.| .+ ..++++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCc
Confidence 3678999999999999999999973220 1233455666666667777 54 89999999999
Q ss_pred cccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccccc-ccc
Q 007583 356 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEY 434 (597)
Q Consensus 356 i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~~-~~~ 434 (597)
++. -....+.++.+|.++.|+|+..+ ...+.+.+|..+...++ |.|+++||+|+...+... .++
T Consensus 87 VDF--------t~EV~rslrvlDgavvVvdaveG-V~~QTEtv~rqa~~~~v------p~i~fiNKmDR~~a~~~~~~~~ 151 (697)
T COG0480 87 VDF--------TIEVERSLRVLDGAVVVVDAVEG-VEPQTETVWRQADKYGV------PRILFVNKMDRLGADFYLVVEQ 151 (697)
T ss_pred ccc--------HHHHHHHHHhhcceEEEEECCCC-eeecHHHHHHHHhhcCC------CeEEEEECccccccChhhhHHH
Confidence 642 12234556779999999999987 78899999999998887 899999999999887543 455
Q ss_pred ccccccc----ccccc---cccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchh
Q 007583 435 IDGDDIS----NFSRA---EDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEE 507 (597)
Q Consensus 435 i~~~~~~----~~~sa---~~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~ 507 (597)
+...+.. ..... ....|+.++.....+.+.. ........++....+...+.+..+.+.+.+ -++++ .+
T Consensus 152 l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~--~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e-~de~l--~e 226 (697)
T COG0480 152 LKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGD--GAKYEWIEIPADLKEIAEEAREKLLEALAE-FDEEL--ME 226 (697)
T ss_pred HHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcC--CcccceeeCCHHHHhHHHHHHHHHHHHHhh-cCHHH--HH
Confidence 5444421 11111 2234444554555544432 111111112222233323334444444432 22222 35
Q ss_pred hhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 508 EFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 508 ~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
.|+++.+++..+....++.....+.++| ++|+||.+|.|++.||++|.+++-.
T Consensus 227 ~yl~g~e~~~~~i~~~i~~~~~~~~~~p----vl~gsa~kn~gv~~lLdav~~~lPs 279 (697)
T COG0480 227 KYLEGEEPTEEEIKKALRKGTIAGKIVP----VLCGSAFKNKGVQPLLDAVVDYLPS 279 (697)
T ss_pred HHhcCCCccHHHHHHHHHHhhhccceee----EEeeecccCCcHHHHHHHHHHHCCC
Confidence 6667766666677777777788777777 9999999999999999999999866
No 61
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=1.7e-15 Score=149.13 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+|+|.+|+|||||++++++........+..+.+.....+.+ ++ ..+.+|||||..........+........+..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 6899999999999999999987643332222222222233444 55 35679999997432111111112223445678
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++...+....+.+.+...........|+|+|+||+|+..
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 99999999999875444444444433332210122359999999999854
No 62
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.67 E-value=1.2e-15 Score=143.72 Aligned_cols=115 Identities=20% Similarity=0.201 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCc----ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH-HhHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLF----SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH-ATLEE 373 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~----~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~ 373 (597)
+|+++|++|+|||||+|+|++.... .......|.....+.+.+ ++..+.+|||||+.. +. .....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~---------~~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES---------LRSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh---------hHHHHHHH
Confidence 4899999999999999999875422 112233444555566666 678899999999832 22 12344
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++.... ....++..+ ........|+++|+||+|+..
T Consensus 71 ~~~~~~~v~vvd~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 71 YAECHAIIYVIDSTDRERFE---ESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred hCCCCEEEEEEECchHHHHH---HHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 67899999999998653222 222222222 111112359999999999854
No 63
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=3.5e-15 Score=140.82 Aligned_cols=117 Identities=20% Similarity=0.225 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~~ 373 (597)
..+|+++|++|+|||||+++|.+...........+.+.....+.+ ++ ..+.+|||||+. .|. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~---------~~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQE---------RFRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChH---------HHHHHHHHH
Confidence 378999999999999999999876533322222223333444554 44 367899999972 222 23445
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+.... ....|+|+|+||+|+..
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYG---ASNVVLLLIGNKCDLEE 122 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC---CCCCcEEEEEECccccc
Confidence 667999999999988643333333333333322 22358999999999864
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.66 E-value=1.9e-15 Score=141.41 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC-ceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g-~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
+|+++|++|+|||||+|+|++........+..+.+.....+.+++. ..+.+|||||.... .......+..+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~~~~ 73 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF--------RSLIPSYIRDS 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHhccC
Confidence 6899999999999999999998766655566666666666666322 35789999997221 11233346779
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|++++....... .++..+........|+++|+||+|+..
T Consensus 74 ~~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 74 SVAVVVYDITNRQSFDNTD---KWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred CEEEEEEECcCHHHHHHHH---HHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 9999999998764333333 333332211111359999999999863
No 65
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=2.9e-15 Score=164.08 Aligned_cols=120 Identities=28% Similarity=0.287 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~ 375 (597)
++|+|+|.+|+|||||+|+|++... ...+.++.|.+.....+.+ ++..+.+|||||+.... ..+...+ ..+...+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD-DGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc-hhHHHHHHHHHHHHHH
Confidence 6899999999999999999999774 3455667777777777776 67899999999997522 2222333 34566778
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++.. .....+.++|...+ .|+|+|+||+|+..
T Consensus 80 ~ad~il~vvd~~~~~~-~~~~~~~~~l~~~~------~piilv~NK~D~~~ 123 (435)
T PRK00093 80 EADVILFVVDGRAGLT-PADEEIAKILRKSN------KPVILVVNKVDGPD 123 (435)
T ss_pred hCCEEEEEEECCCCCC-HHHHHHHHHHHHcC------CcEEEEEECccCcc
Confidence 8999999999987633 33344566777765 39999999999754
No 66
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.66 E-value=1.7e-15 Score=171.36 Aligned_cols=115 Identities=22% Similarity=0.188 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccc------cceecCceeE-----EEec------CCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARL------FATLDPRLKS-----VVLP------SGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~------f~Tld~t~~~-----i~l~------~g~~i~LiDTpG~i~~ 358 (597)
+.|+|+++|++|+|||||+|+|++..+...... +++.-+.... .... .-..+.+|||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e-- 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE-- 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH--
Confidence 569999999999999999999998764322221 1111111000 0000 00126899999993
Q ss_pred chhhHHHHHH-HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 359 LPLQLVDAFH-ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 359 lp~~lve~f~-sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.|. .+...+..+|++++|+|++++. ..+.......+...++ |+++|+||+|+..
T Consensus 83 -------~f~~~~~~~~~~aD~~IlVvDa~~g~-~~qt~e~i~~~~~~~v------piIvviNK~D~~~ 137 (586)
T PRK04004 83 -------AFTNLRKRGGALADIAILVVDINEGF-QPQTIEAINILKRRKT------PFVVAANKIDRIP 137 (586)
T ss_pred -------HHHHHHHHhHhhCCEEEEEEECCCCC-CHhHHHHHHHHHHcCC------CEEEEEECcCCch
Confidence 332 2334567799999999998863 3333344455555443 8999999999864
No 67
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=1e-15 Score=150.45 Aligned_cols=113 Identities=21% Similarity=0.225 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEecCCceEEEeecccccccchh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL 361 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~ 361 (597)
.+|+++|+.|+|||||+++|++... ..+...+.|.+.....+.. ++..+.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~----- 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA----- 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHH-----
Confidence 6899999999999999999986410 1122445555554444443 67789999999993
Q ss_pred hHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCC
Q 007583 362 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 426 (597)
Q Consensus 362 ~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~ 426 (597)
.....+...+..+|++++|+|+..+ ...+...++..+...++ | +|+|+||+|++.
T Consensus 77 ---~~~~~~~~~~~~~D~~ilVvda~~g-~~~~~~~~~~~~~~~~~------~~iIvviNK~D~~~ 132 (195)
T cd01884 77 ---DYIKNMITGAAQMDGAILVVSATDG-PMPQTREHLLLARQVGV------PYIVVFLNKADMVD 132 (195)
T ss_pred ---HHHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCC------CcEEEEEeCCCCCC
Confidence 1224456677789999999999876 45566667778888775 4 789999999864
No 68
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.65 E-value=2.9e-15 Score=140.37 Aligned_cols=123 Identities=26% Similarity=0.327 Sum_probs=82.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchh-hHHHHH--HHhHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL-QLVDAF--HATLE 372 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~-~lve~f--~sTl~ 372 (597)
.++|+++|.+|+|||||+|+|++.... ..+.++.|.......+.. ++..+.++||||+...... ...+.+ ...+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 468999999999999999999997633 334444454444444444 6778999999998543211 111222 23445
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+..+|++++|+|++++..... ..+...+...+ .|+++|+||+|+.+.
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~------~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQD-LRIAGLILEEG------KALVIVVNKWDLVEK 128 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhH-HHHHHHHHhcC------CCEEEEEeccccCCc
Confidence 6678999999999988744332 33333433333 489999999998754
No 69
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=2.6e-15 Score=146.74 Aligned_cols=120 Identities=24% Similarity=0.266 Sum_probs=76.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeeccccc--ccchhhHHHHHHHhH---
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFI--SDLPLQLVDAFHATL--- 371 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i--~~lp~~lve~f~sTl--- 371 (597)
.+.|+++|++|+|||||+|+|++........++.|..+. .+.+ + .+.+|||||+. ...+....+.++...
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 479999999999999999999997755555556555543 2222 2 68999999962 222222233443321
Q ss_pred -H-HHHhcCEEEEEEeCCCCCh----------HHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 372 -E-EVVEADLLVHVLDCTAPNL----------EEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 372 -~-~l~~aDliL~VvDas~~~~----------~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
. .+..++++++|+|.+.... ......+...+...+ .|+++|+||+|+.+.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG------IPPIVAVNKMDKIKN 145 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC------CCeEEEEECccccCc
Confidence 1 3345689999999864210 011233344454444 399999999998643
No 70
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.65 E-value=7.4e-15 Score=137.34 Aligned_cols=115 Identities=24% Similarity=0.234 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l~ 375 (597)
+|+++|++|||||||+++|++...........+.+.....+.+ ++ ..+.+|||||.. .+. .....+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~---------~~~~~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQE---------RFRSITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChH---------HHHHHHHHHhC
Confidence 6899999999999999999987754443333344444444555 34 467899999972 222 2233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++...+....+...+..... ...|+++|+||+|+..
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~---~~~pivvv~nK~D~~~ 119 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYAD---PNVVIMLVGNKSDLED 119 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEEchhccc
Confidence 79999999999876443333333333333221 2359999999999754
No 71
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.64 E-value=2.6e-15 Score=172.27 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=82.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec---CCceEEEeecccccccchhhHHHHHHH-hH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP---SGRKVLLSDTVGFISDLPLQLVDAFHA-TL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~---~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl 371 (597)
+.|+|+|+|++|+|||||+++|++.........+.|.+.....+.+. .+..+.+|||||+ +.|.. ..
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh---------e~F~~mr~ 313 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH---------EAFSSMRS 313 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH---------HHHHHHHH
Confidence 46899999999999999999999877554444455554444443332 3578999999999 34533 34
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+..+|++++|+|++++.. .+....+..+...++ |+|+|+||+|+..
T Consensus 314 rg~~~aDiaILVVDA~dGv~-~QT~E~I~~~k~~~i------PiIVViNKiDl~~ 361 (742)
T CHL00189 314 RGANVTDIAILIIAADDGVK-PQTIEAINYIQAANV------PIIVAINKIDKAN 361 (742)
T ss_pred HHHHHCCEEEEEEECcCCCC-hhhHHHHHHHHhcCc------eEEEEEECCCccc
Confidence 56788999999999988643 333334445554443 9999999999865
No 72
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.64 E-value=4.5e-15 Score=138.75 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~a 377 (597)
+|+++|++|||||||+++|++....... ...|.......+.. .+..+.+|||||... +.. ....+..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~-~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~---------~~~~~~~~~~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI-IVPTVGFNVESFEK-GNLSFTAFDMSGQGK---------YRGLWEHYYKNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce-ecCccccceEEEEE-CCEEEEEEECCCCHh---------hHHHHHHHHccC
Confidence 3789999999999999999986422211 12222222223333 567889999999832 221 22345679
Q ss_pred CEEEEEEeCCCCChHHHHHH-HHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRTT-VLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~-v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|++++........ +..++....+. ....|+++|+||+|+.+
T Consensus 70 d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIK-HRRVPILFFANKMDLPD 118 (162)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHcCcccc-cCCCCEEEEEeCccccC
Confidence 99999999987633222221 22222211111 12469999999999864
No 73
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=3.9e-15 Score=172.54 Aligned_cols=122 Identities=27% Similarity=0.296 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~ 373 (597)
..++|+|+|++|+|||||+|+|++... .+.+.++.|.+.......+ ++..+.+|||||+.... ..+...+ ..+...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV-EGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC-ccHHHHHHHHHHHH
Confidence 458999999999999999999999764 3455667776665555555 67889999999986422 2233333 345667
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++.+. ......+.+.|...+ +|+|+|+||+|+..
T Consensus 352 ~~~aD~iL~VvDa~~~~-~~~d~~i~~~Lr~~~------~pvIlV~NK~D~~~ 397 (712)
T PRK09518 352 VSLADAVVFVVDGQVGL-TSTDERIVRMLRRAG------KPVVLAVNKIDDQA 397 (712)
T ss_pred HHhCCEEEEEEECCCCC-CHHHHHHHHHHHhcC------CCEEEEEECccccc
Confidence 78899999999998753 333345556666544 49999999999754
No 74
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=8.2e-15 Score=138.26 Aligned_cols=116 Identities=23% Similarity=0.236 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
.+|+++|++|+|||||++++.+........+..+.+.....+.. ++ ..+.+|||||... +. .....+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER---------FRTITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh---------HHHHHHHHh
Confidence 68999999999999999999986643322222222333334444 33 3578999999732 22 223345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+.... ....|+++|+||+|+..
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~---~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA---SENVNKLLVGNKCDLTD 121 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC---CCCCcEEEEEEChhccc
Confidence 67999999999987643333333333333322 12359999999999854
No 75
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.64 E-value=1.8e-15 Score=149.79 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------ccccceecCceeEEEecCCceE
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSD-------------------------------ARLFATLDPRLKSVVLPSGRKV 347 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~-------------------------------~~~f~Tld~t~~~i~l~~g~~i 347 (597)
+|+|+|++|||||||+++|++....+. ...+.|.++....+.+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 489999999999999999986442211 1255677776666665 78899
Q ss_pred EEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 348 LLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 348 ~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.++||||+.. ....+...+..+|++++|+|++.+. ..+......++...+. +++|+|+||+|+..
T Consensus 80 ~liDTpG~~~--------~~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~~~~~~~~~~~-----~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ--------YTRNMVTGASTADLAILLVDARKGV-LEQTRRHSYILSLLGI-----RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH--------HHHHHHHhhhhCCEEEEEEECCCCc-cHhHHHHHHHHHHcCC-----CcEEEEEEchhccc
Confidence 9999999832 1133455677899999999998863 3444445566666654 25788999999864
No 76
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.64 E-value=8.6e-15 Score=138.50 Aligned_cols=117 Identities=21% Similarity=0.146 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+++|.+|+|||||+++|++........+..+.+.....+.. ++ ..+.+|||+|.... .......+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~--------~~~~~~~~~ 72 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERY--------RTITTAYYR 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHH--------HHHHHHHcc
Confidence 57999999999999999999987642222121111222223333 33 46789999998321 112344567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++.. .+.+.+++..+........|+++|+||+|+..
T Consensus 73 ~~~~~l~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 73 GAMGFILMYDITNEES---FNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred CCcEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 8999999999987533 33344444444222122358999999999854
No 77
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.64 E-value=2.3e-15 Score=174.08 Aligned_cols=114 Identities=21% Similarity=0.247 Sum_probs=85.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
+.|+|+|+|+.|+|||||+++|.+..+......+.|.+.....+.+ ++..+.||||||+.. |. .....+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~---------F~~m~~rga 358 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEA---------FTAMRARGA 358 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE-CCEEEEEEECCCCcc---------chhHHHhhh
Confidence 4699999999999999999999987765555555666655556666 578899999999842 22 223456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|+.++. ..+....+..+...++ |+|+|+||+|+..
T Consensus 359 ~~aDiaILVVdAddGv-~~qT~e~i~~a~~~~v------PiIVviNKiDl~~ 403 (787)
T PRK05306 359 QVTDIVVLVVAADDGV-MPQTIEAINHAKAAGV------PIIVAINKIDKPG 403 (787)
T ss_pred hhCCEEEEEEECCCCC-CHhHHHHHHHHHhcCC------cEEEEEECccccc
Confidence 6799999999998863 3444444555655554 8999999999864
No 78
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.64 E-value=3e-15 Score=170.16 Aligned_cols=114 Identities=25% Similarity=0.304 Sum_probs=86.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEV 374 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l 374 (597)
+|+++|+.++|||||+++|+|.+. ..+...+.|++.....+..+++..+.++||||+ +.| ..+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh---------e~fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH---------EKFLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH---------HHHHHHHHHHh
Confidence 689999999999999999998542 334445677766555555557778899999999 334 5567778
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|+..+ ...+......++..+++ .++|+|+||+|+++.
T Consensus 73 ~~~D~~lLVVda~eg-~~~qT~ehl~il~~lgi-----~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 73 GGIDHALLVVACDDG-VMAQTREHLAILQLTGN-----PMLTVALTKADRVDE 119 (614)
T ss_pred hcCCEEEEEEECCCC-CcHHHHHHHHHHHHcCC-----CeEEEEEECCccCCH
Confidence 889999999999886 34555555677877775 136899999998753
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.64 E-value=1.3e-14 Score=137.05 Aligned_cols=119 Identities=23% Similarity=0.224 Sum_probs=74.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC-ceEEEeecccccccchhhHHHHHH-HhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-RKVLLSDTVGFISDLPLQLVDAFH-ATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g-~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l~~ 376 (597)
+|+++|++|||||||+|+|++...........+.+.....+.++++ ..+.+|||||+.. +. .....+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 72 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER---------FQSLGVAFYRG 72 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH---------HHhHHHHHhcC
Confidence 6999999999999999999987643222111122233334444222 3456899999832 21 12344667
Q ss_pred cCEEEEEEeCCCCChHHHHHHHH-HHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVL-QVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~-~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++........+. .++..+........|+++|+||+|+..
T Consensus 73 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 73 ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 99999999998764333333332 233333322233469999999999975
No 80
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=8.7e-15 Score=137.79 Aligned_cols=117 Identities=23% Similarity=0.230 Sum_probs=78.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
..+|+++|++|||||||+++|++........+..+.+.....+.. ++ ..+.+|||||... +.. ....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~---------~~~~~~~~ 72 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER---------YRAITSAY 72 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH---------HHHHHHHH
Confidence 468999999999999999999987754444444444444555555 34 3578999999832 221 2334
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..++++++|+|++++........+...+.... ....|+++|+||+|+..
T Consensus 73 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 73 YRGAVGALLVYDITKKQTFENVERWLKELRDHA---DSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccc
Confidence 567999999999987544333333333333322 12359999999999754
No 81
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.64 E-value=1.3e-14 Score=135.87 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
+|+++|++|+|||||+|+|++........+..+.+.....+.+.+ ...+.+|||+|.... .......+..+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~~ 73 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY--------LEVRNEFYKDT 73 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH--------HHHHHHHhccC
Confidence 689999999999999999998764333222222233333444421 246679999998221 11223345679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCC--ccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS--EEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~--~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|++++........+...+...... .....|+++|+||+|+..
T Consensus 74 d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 74 QGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 9999999998764433333333333332211 112359999999999864
No 82
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.63 E-value=1.3e-14 Score=137.75 Aligned_cols=119 Identities=19% Similarity=0.157 Sum_probs=78.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHH-HhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFH-ATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~ 373 (597)
...+|+++|.+|+|||||++++++........+..+.+.....+...+ ...+.+|||+|.. .+. .....
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 73 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE---------SFRSITRSY 73 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH---------HHHHHHHHH
Confidence 357899999999999999999998764444333333343334444422 2367899999972 232 23455
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++... ..+..++..+........|+|+|+||+|+..
T Consensus 74 ~~~~d~il~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 74 YRGAAGALLVYDITRRETF---NHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred hccCCEEEEEEECCCHHHH---HHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 6789999999999875333 3344455443221122359999999999864
No 83
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.1e-15 Score=166.80 Aligned_cols=120 Identities=28% Similarity=0.320 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
.+||++|.||+|||||+|+|||.+..+.+.++.|.+-..+.... .+..+.++|.||..+-.+.+..|......-.-..+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 56999999999999999999999999999999999999999888 77789999999998766666555554333333568
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
|+++.|+|+++ .+.+..-..+++ ++|. |+|+++|++|....
T Consensus 83 D~ivnVvDAtn--LeRnLyltlQLl-E~g~------p~ilaLNm~D~A~~ 123 (653)
T COG0370 83 DLIVNVVDATN--LERNLYLTLQLL-ELGI------PMILALNMIDEAKK 123 (653)
T ss_pred CEEEEEcccch--HHHHHHHHHHHH-HcCC------CeEEEeccHhhHHh
Confidence 99999999986 355554444444 5665 89999999997543
No 84
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.63 E-value=1.2e-14 Score=135.84 Aligned_cols=113 Identities=21% Similarity=0.212 Sum_probs=72.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~a 377 (597)
.|+++|++|+|||||+++|++...... ..|.......+.......+.++||+|... +.. ....+..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT---IPTVGFNVEMLQLEKHLSLTVWDVGGQEK---------MRTVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc---cCccCcceEEEEeCCceEEEEEECCCCHh---------HHHHHHHHhccC
Confidence 379999999999999999998764221 22333333445554556889999999832 221 23346679
Q ss_pred CEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|++++..... ...+.+++.... ....|+++|+||+|+..
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPG 115 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECccccc
Confidence 99999999987632122 222333332211 12359999999999853
No 85
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.63 E-value=6.8e-15 Score=139.60 Aligned_cols=103 Identities=29% Similarity=0.356 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
+|+++|++|+|||||+|+|+|.... ...+..+.+.. . .+|||||+....+. .+......+..+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~---------~~~~~~v~~~~-~--~~iDtpG~~~~~~~----~~~~~~~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL---------ARKTQAVEFND-K--GDIDTPGEYFSHPR----WYHALITTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc---------CccceEEEECC-C--CcccCCccccCCHH----HHHHHHHHHhcCC
Confidence 7999999999999999999986521 11223334422 2 26999998543222 2233344577899
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++++|+|++.+..... ..+..+.. .+|+++|+||+|+.+
T Consensus 67 ~il~v~d~~~~~s~~~-----~~~~~~~~----~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 67 MLIYVHGANDPESRLP-----AGLLDIGV----SKRQIAVISKTDMPD 105 (158)
T ss_pred EEEEEEeCCCcccccC-----HHHHhccC----CCCeEEEEEccccCc
Confidence 9999999987632211 12223321 248999999999743
No 86
>PRK12740 elongation factor G; Reviewed
Probab=99.63 E-value=1.9e-15 Score=174.11 Aligned_cols=237 Identities=16% Similarity=0.125 Sum_probs=127.4
Q ss_pred EcCCCCCHHHHHHHHHcCCCc------------------ccccccceecCceeEEEecCCceEEEeecccccccchhhHH
Q 007583 303 VGYTNAGKSTLVSALSDSDLF------------------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLV 364 (597)
Q Consensus 303 VG~tgAGKSTLlnaL~g~~v~------------------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lv 364 (597)
+|+.|+|||||+++|+..... .+.....|+......+.+ ++..+.++||||+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVD------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHH-------
Confidence 699999999999999543211 011233444444555666 778999999999942
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-ccccccccc----
Q 007583 365 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYIDGDD---- 439 (597)
Q Consensus 365 e~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~~~~---- 439 (597)
....+...+..+|++++|+|++.+. ..+...++..+...++ |+++|+||+|+...... .++++...+
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~-~~~~~~~~~~~~~~~~------p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~ 144 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGV-EPQTETVWRQAEKYGV------PRIIFVNKMDRAGADFFRVLAQLQEKLGAPV 144 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCc-CHHHHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHHHHHCCCc
Confidence 1123445567899999999998764 3444455555555554 89999999999865422 133333222
Q ss_pred ccccccccccCCCCcc---cccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhhhcccCCC
Q 007583 440 ISNFSRAEDKDTTSEP---VDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQ 516 (597)
Q Consensus 440 ~~~~~sa~~~~gi~eL---~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y~~~~~~~ 516 (597)
.....+...+.++..+ .....+.+ . ..........+..+.+.+.+.+..+.+...+ .++++ .++|+++.+..
T Consensus 145 ~~~~~p~~~~~~~~~~id~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~-~d~~~--le~~l~~~~l~ 219 (668)
T PRK12740 145 VPLQLPIGEGDDFTGVVDLLSMKAYRY-D-EGGPSEEIEIPAELLDRAEEAREELLEALAE-FDDEL--MEKYLEGEELS 219 (668)
T ss_pred eeEEecccCCCCceEEEECccceEEEe-c-CCCeeEEecCCHHHHHHHHHHHHHHHHHHHh-cCHHH--HHHHHCCCCCC
Confidence 1111222222222211 11111100 0 0000000011111111122222222222221 22212 24555544333
Q ss_pred CCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 517 QPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
..............+.++| |+++||++|.|++.||++|.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~P----v~~gSA~~~~Gv~~LLd~i~~~lPs 263 (668)
T PRK12740 220 EEEIKAGLRKATLAGEIVP----VFCGSALKNKGVQRLLDAVVDYLPS 263 (668)
T ss_pred HHHHHHHHHHHHHcCCEEE----EEeccccCCccHHHHHHHHHHHCCC
Confidence 3333333445555566666 9999999999999999999998754
No 87
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=1.6e-14 Score=140.41 Aligned_cols=118 Identities=20% Similarity=0.132 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|.+|+|||||+++|++.... ....+++.+.....+.+ ++. .+.+|||||..+. .......+..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 70 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEY--------TALRDQWIRE 70 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEE-CCEEEEEEEEECCCchhh--------HHHHHHHHHh
Confidence 3899999999999999999875532 22222222222223334 444 4678999997321 1112235677
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|+++..+......+...+...........|+|+|+||+|+..
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 71 GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 99999999998865545545554544443221123459999999999864
No 88
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.62 E-value=7.8e-15 Score=138.51 Aligned_cols=111 Identities=23% Similarity=0.186 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCce--eEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL--KSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~--~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
+|+++|.+|+|||||++++.+........ .|..+.. ....+ ++ ..+.+|||+|+. .|.. ....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 69 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYKHNAKF-EGKTILVDFWDTAGQE---------RFQTMHASY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEEEEEEE-CCEEEEEEEEeCCCch---------hhhhhhHHH
Confidence 68999999999999999998765322211 1111111 12222 33 356799999983 2322 2335
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+..+|++++|+|++++........+...+.... ...|+++|+||+|+.
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 70 YHKAHACILVFDVTRKITYKNLSKWYEELREYR----PEIPCIVVANKIDLD 117 (161)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCcEEEEEECccCc
Confidence 678999999999987644444444444443321 125999999999973
No 89
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=1.7e-14 Score=139.43 Aligned_cols=114 Identities=25% Similarity=0.263 Sum_probs=77.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH-HhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH-ATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l~ 375 (597)
..+|+++|++|||||||+++|++.... ....|..+....+.+ ++..+.++||||... +. .....+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~-~~~~~~l~D~~G~~~---------~~~~~~~~~~ 85 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTI-GNIKFKTFDLGGHEQ---------ARRLWKDYFP 85 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEE-CCEEEEEEECCCCHH---------HHHHHHHHhc
Confidence 368999999999999999999986532 223455666667766 678899999999732 22 1234457
Q ss_pred hcCEEEEEEeCCCCChHH-HHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|.+++|+|+++..... ....+..++ +.......|+++|+||+|+..
T Consensus 86 ~ad~iilV~D~~~~~s~~~~~~~~~~i~---~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 86 EVDGIVFLVDAADPERFQESKEELDSLL---SDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHH---cCccccCCCEEEEEeCCCCCC
Confidence 799999999998752221 122222222 222223469999999999864
No 90
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=3.1e-14 Score=138.58 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCcee-EEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLK-SVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~-~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
+|+++|.+|+|||||++++++..........++...... .+.+ ++ ..+.+|||||.. .+.. ....+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~---------~~~~~~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQE---------RFRSVTHAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcH---------HHHHhhHHHc
Confidence 689999999999999999998764333332222212222 2333 33 356799999972 2322 33456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|+++....+....+...+..... ...|+++|+||+|+..
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ---EDVVIMLLGNKADMSG 120 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEEcccchh
Confidence 679999999999876444444444444444332 2359999999999864
No 91
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.62 E-value=5.6e-15 Score=166.93 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
+.|+|+++|++|+|||||+++|.+..+......+.|.+.....+.+.++..+.+|||||+.. |. .....+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~---------F~~~r~rga 156 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA---------FTSMRARGA 156 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcc---------hhhHHHhhh
Confidence 46899999999999999999999987655555555655555555554455899999999932 22 223456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++.. .+....+..+...++ |+|+|+||+|+.+
T Consensus 157 ~~aDiaILVVda~dgv~-~qT~e~i~~~~~~~v------PiIVviNKiDl~~ 201 (587)
T TIGR00487 157 KVTDIVVLVVAADDGVM-PQTIEAISHAKAANV------PIIVAINKIDKPE 201 (587)
T ss_pred ccCCEEEEEEECCCCCC-HhHHHHHHHHHHcCC------CEEEEEECccccc
Confidence 77999999999987643 333334455555554 9999999999854
No 92
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.62 E-value=1.3e-14 Score=141.49 Aligned_cols=113 Identities=25% Similarity=0.302 Sum_probs=75.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC-Cccc---------------ccccceecCceeEEEecCCceEEEeecccccccch
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD-LFSD---------------ARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP 360 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~-v~~~---------------~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp 360 (597)
+++|+++|.+|+|||||+++|++.. .... .....|.......+.. ++..+.++||||+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~--- 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD--- 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH---
Confidence 4689999999999999999999631 1111 1123334444444444 567889999999832
Q ss_pred hhHHHHH-HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 361 LQLVDAF-HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 361 ~~lve~f-~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
| ......+..+|++++|+|++++. ..+...+...+...+ .|+++|+||+|+..
T Consensus 78 ------~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~~------~p~iiv~NK~Dl~~ 131 (194)
T cd01891 78 ------FGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALELG------LKPIVVINKIDRPD 131 (194)
T ss_pred ------HHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHcC------CCEEEEEECCCCCC
Confidence 2 22345577899999999998753 233333333333333 38999999999864
No 93
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.2e-14 Score=155.91 Aligned_cols=128 Identities=27% Similarity=0.340 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHH--HHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDA--FHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~--f~sTl~~l~ 375 (597)
+.|||+|+||+|||||+|+|+..++.+......|++..+......+|.++.|+||+|+.+. ..+-+++ .......+.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEALGIERARKRIE 347 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc-cCChhHHHhHHHHHHHHh
Confidence 8999999999999999999999998776666666666666555569999999999999762 1222232 355666788
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccC------CCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEK------LKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~------~~P~IiVlNKiDl~~~ 427 (597)
.||++++|+|+....+ +....+.+.|...+..... .+|+|+|.||+|+..+
T Consensus 348 ~advi~~vvda~~~~t-~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 348 RADVILLVVDAEESDT-ESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred hcCEEEEEeccccccc-ccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 8999999999954322 2333445666666543222 2689999999998765
No 94
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=1.4e-14 Score=138.20 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccc---------------ccccceecCceeEEEe----cCCceEEEeeccccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSD---------------ARLFATLDPRLKSVVL----PSGRKVLLSDTVGFISD 358 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~---------------~~~f~Tld~t~~~i~l----~~g~~i~LiDTpG~i~~ 358 (597)
++|+++|++|+|||||+++|++...... ...+.|..+....+.+ ..+..+.+|||||+...
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 3799999999999999999987431110 0112233332222222 13456789999999431
Q ss_pred chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 359 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
...+...+..+|++++|+|++++........+. .+...+ .|+++|+||+|+.+
T Consensus 81 --------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~~~------~~iiiv~NK~Dl~~ 133 (179)
T cd01890 81 --------SYEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALENN------LEIIPVINKIDLPS 133 (179)
T ss_pred --------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHHcC------CCEEEEEECCCCCc
Confidence 122344567799999999998764333333332 222223 48999999999854
No 95
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.62 E-value=1.5e-14 Score=135.46 Aligned_cols=117 Identities=21% Similarity=0.110 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+++|++|+|||||++++++.... .....++.+.......+ ++ ..+.+|||||+.+. . ......+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--~------~~~~~~~~ 72 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV-TDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF--S------AMREQYMR 72 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceEEEEEEE-CCEEEEEEEEECCCCcch--h------HHHHHHHh
Confidence 58999999999999999999986532 22222222222223333 34 35678999998421 1 11223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+.... .....|+++|+||+|+..
T Consensus 73 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 73 TGEGFLLVFSVTDRGSFEEVDKFHTQILRVK--DRDEFPMILVGNKADLEH 121 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCCEEEEeeCccccc
Confidence 7999999999987643333333333333221 112359999999999854
No 96
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.62 E-value=4.5e-15 Score=152.41 Aligned_cols=154 Identities=24% Similarity=0.291 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceec
Q 007583 255 QLQRRRILERRSHLLSQIEEVRRTRAVQRAARR-RHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLD 333 (597)
Q Consensus 255 e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~-~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld 333 (597)
|...-.++.++++|+++|++-++ +.+.. ..=...++|..+|++||+|++|||||||+|++....+.+++|+|+.
T Consensus 25 e~hig~lKaklA~Lr~El~~~~~-----~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~ 99 (365)
T COG1163 25 EHHIGLLKAKLAELREELEKRKS-----KSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLE 99 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh-----cCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecc
Confidence 34445666667777777766511 11110 0001156788999999999999999999999999999999999999
Q ss_pred CceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCC
Q 007583 334 PRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLK 413 (597)
Q Consensus 334 ~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~ 413 (597)
+.-+.+.+ +|..+.++|+||++...+.... .-+..+..++.||++++|+|+..+ ..+.+.+...|+..|+.....+
T Consensus 100 ~VPG~l~Y-~ga~IQild~Pgii~gas~g~g-rG~~vlsv~R~ADlIiiVld~~~~--~~~~~~i~~ELe~~GIrlnk~~ 175 (365)
T COG1163 100 PVPGMLEY-KGAQIQLLDLPGIIEGASSGRG-RGRQVLSVARNADLIIIVLDVFED--PHHRDIIERELEDVGIRLNKRP 175 (365)
T ss_pred cccceEee-cCceEEEEcCcccccCcccCCC-CcceeeeeeccCCEEEEEEecCCC--hhHHHHHHHHHHhcCeEecCCC
Confidence 98888887 8999999999999876544321 113345667889999999999865 3347788899999998655555
Q ss_pred cEEE
Q 007583 414 NMIE 417 (597)
Q Consensus 414 P~Ii 417 (597)
|-|.
T Consensus 176 p~V~ 179 (365)
T COG1163 176 PDVT 179 (365)
T ss_pred CceE
Confidence 5543
No 97
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.62 E-value=6.8e-15 Score=166.62 Aligned_cols=112 Identities=23% Similarity=0.275 Sum_probs=84.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEV 374 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l 374 (597)
+|+++|+.|+|||||+|+|+|... ..+...+.|.+.....+.+ ++..+.+|||||+ +.| ..+...+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGh---------e~f~~~~~~g~ 71 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGH---------EKFISNAIAGG 71 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCH---------HHHHHHHHhhh
Confidence 799999999999999999998542 2333456677766666666 4578899999998 333 4456677
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++.. .+......++..+++ | +|+|+||+|+++.
T Consensus 72 ~~aD~aILVVDa~~G~~-~qT~ehl~il~~lgi------~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 72 GGIDAALLVVDADEGVM-TQTGEHLAVLDLLGI------PHTIVVITKADRVNE 118 (581)
T ss_pred ccCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC------CeEEEEEECCCCCCH
Confidence 88999999999998643 333344466777776 5 9999999999754
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=1.9e-14 Score=135.78 Aligned_cols=118 Identities=24% Similarity=0.220 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
..++|+++|++|||||||+++|++........+..+.+.....+.+ ++ ..+.++||+|+. .+.. ...
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~---------~~~~~~~~ 75 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQE---------RFRSITQS 75 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcH---------HHHHHHHH
Confidence 3589999999999999999999976543332222223333334444 44 346789999972 2222 234
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|++++........+...+..+.. ...|+++|+||+|+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 76 YYRSANALILTYDITCEESFRCLPEWLREIEQYAN---NKVITILVGNKIDLAE 126 (169)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccc
Confidence 56779999999999875333333334343444321 2248999999999854
No 99
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.61 E-value=2.4e-14 Score=136.66 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=74.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
..++|+++|++|||||||+++|++..... ...|.......+.+ ++..+.+|||||... +. .....+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~---~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~---------~~~~~~~~~ 79 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT---ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT---------LRPYWRNYF 79 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEE-CCEEEEEEECCCCHH---------HHHHHHHHh
Confidence 34789999999999999999999874321 11222233344555 577889999999832 21 123346
Q ss_pred HhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++...... ..+..++... .....|+++|+||+|+..
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPG 129 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECccccc
Confidence 679999999999876322222 2222333211 112359999999999864
No 100
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.61 E-value=7.7e-15 Score=170.34 Aligned_cols=119 Identities=23% Similarity=0.266 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccch----hhHHHHHHHhHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP----LQLVDAFHATLEE 373 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp----~~lve~f~sTl~~ 373 (597)
.+|+++|++|||||||+|+|+|....+.+.++.|.+...+.+.. ++.++.++||||+.+-.+ ....+........
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 68999999999999999999998877778888888887777765 778899999999865322 1222222222222
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
...+|++++|+|+++. +... .+...+.+.++ |+++|+||+|+.+
T Consensus 83 ~~~aD~vI~VvDat~l--er~l-~l~~ql~e~gi------PvIvVlNK~Dl~~ 126 (772)
T PRK09554 83 SGDADLLINVVDASNL--ERNL-YLTLQLLELGI------PCIVALNMLDIAE 126 (772)
T ss_pred ccCCCEEEEEecCCcc--hhhH-HHHHHHHHcCC------CEEEEEEchhhhh
Confidence 3479999999999874 2222 23344555554 9999999999753
No 101
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.61 E-value=1.6e-14 Score=136.93 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC-ceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-RKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g-~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
..+|+++|++|+|||||++++++........+..+.+.....+.+.+. ..+.+|||||... +. .....+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~---------~~~~~~~~~ 73 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER---------FRTITTAYY 73 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH---------HHHHHHHHh
Confidence 478999999999999999999987643322222222222334444221 3568999999732 21 123446
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++.... .+.+++..+........|+++|.||+|+.+
T Consensus 74 ~~ad~~i~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 74 RGAMGIILVYDITDEKSFE---NIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred CCCCEEEEEEECcCHHHHH---hHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 7899999999998764333 333444433221122359999999999864
No 102
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.61 E-value=8.5e-15 Score=131.01 Aligned_cols=114 Identities=31% Similarity=0.420 Sum_probs=84.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhH-HHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQL-VDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~l-ve~f~sTl~~l~~ 376 (597)
.|+|+|++|+|||||+|+|++... .+....++|..+....+.+ ++..+.++||||+........ ...+...++.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 489999999999999999999653 5666677887776655666 788889999999976544432 2245567788889
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEec
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 421 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNK 421 (597)
+|++++|+|++++ .......+.+.|+ ..+|+++|+||
T Consensus 80 ~d~ii~vv~~~~~-~~~~~~~~~~~l~-------~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNP-ITEDDKNILRELK-------NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSH-SHHHHHHHHHHHH-------TTSEEEEEEES
T ss_pred CCEEEEEEECCCC-CCHHHHHHHHHHh-------cCCCEEEEEcC
Confidence 9999999997763 2334444445452 22599999998
No 103
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.61 E-value=1.7e-14 Score=135.45 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|++|+|||||+|+|.+...... ...++.+.....+.. ++ ..+.+|||||+.+.. ......+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~~ 71 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDD-YDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS--------AMRDQYMRT 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-cCCchhhhEEEEEEE-CCEEEEEEEEECCCcccch--------HHHHHHHhh
Confidence 689999999999999999998653222 222222222223333 33 356789999984321 111234567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|.+++|+|++++...+....+...+..... ....|+++|.||+|+..
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 72 GEGFLLVYSITDRQSFEEIKKFREQILRVKD--RDDVPIVLVGNKCDLES 119 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccc
Confidence 9999999999876444444443333333221 12359999999999864
No 104
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.3e-15 Score=168.25 Aligned_cols=198 Identities=18% Similarity=0.201 Sum_probs=127.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCcc------cccccceecCcee------EEEe-----cCCceEEEeecccccc
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFS------DARLFATLDPRLK------SVVL-----PSGRKVLLSDTVGFIS 357 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~------~~~~f~Tld~t~~------~i~l-----~~g~~i~LiDTpG~i~ 357 (597)
-+.|+|||+||..+|||-|+..|.+.++.. ..+.++|..|... .+.- ..-..+++|||||+
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh-- 550 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH-- 550 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc--
Confidence 467999999999999999999999988643 3444555444210 0000 01124689999998
Q ss_pred cchhhHHHHHH-HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccccccccc
Q 007583 358 DLPLQLVDAFH-ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGDVEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~-sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~~~~~i~ 436 (597)
++|. ...+....||++|+|+|+.++ .+.+.-...+.|+.-+ .|+|+++||+|++..|...
T Consensus 551 -------EsFtnlRsrgsslC~~aIlvvdImhG-lepqtiESi~lLR~rk------tpFivALNKiDRLYgwk~~----- 611 (1064)
T KOG1144|consen 551 -------ESFTNLRSRGSSLCDLAILVVDIMHG-LEPQTIESINLLRMRK------TPFIVALNKIDRLYGWKSC----- 611 (1064)
T ss_pred -------hhhhhhhhccccccceEEEEeehhcc-CCcchhHHHHHHHhcC------CCeEEeehhhhhhcccccC-----
Confidence 5553 234456679999999999998 4555555556666655 4999999999998877541
Q ss_pred cccccccccccccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhhhcccCCC
Q 007583 437 GDDISNFSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQ 516 (597)
Q Consensus 437 ~~~~~~~~sa~~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y~~~~~~~ 516 (597)
...+++...... ...+........+.++.+..+..++...||.+.+..
T Consensus 612 -p~~~i~~~lkkQ-------------------------------~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~ 659 (1064)
T KOG1144|consen 612 -PNAPIVEALKKQ-------------------------------KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMG 659 (1064)
T ss_pred -CCchHHHHHHHh-------------------------------hHHHHHHHHHHHHHHHHHHHHcccchhheeeccccc
Confidence 000011000000 001111222233334444444445577788877654
Q ss_pred CCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 517 QPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
..+.+||+||++|.||++||-+|.+..+.
T Consensus 660 -------------------~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 660 -------------------ETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred -------------------ceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 56679999999999999999999887665
No 105
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.61 E-value=2e-14 Score=134.91 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~a 377 (597)
+|+++|++|+|||||+++|+...... ...|+......+.. .+..+.+|||||+. .|.. ....+..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~---------~~~~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT---TIPTIGFNVETVTY-KNLKFQVWDLGGQT---------SIRPYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC---cCCccCcCeEEEEE-CCEEEEEEECCCCH---------HHHHHHHHHhcCC
Confidence 38999999999999999997655321 12344444444544 56788999999983 2222 23346679
Q ss_pred CEEEEEEeCCCCChHH-HHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|++++.... ....+..+++.... ...|+++|+||+|+.+
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEEL---KGAVLLVFANKQDMPG 114 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhh---cCCcEEEEEeCCCCCC
Confidence 9999999998752211 12333333333221 2359999999999864
No 106
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.61 E-value=2.4e-14 Score=138.54 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec--CCceEEEeecccccccchhhHHHHHHHh-HHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--SGRKVLLSDTVGFISDLPLQLVDAFHAT-LEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~--~g~~i~LiDTpG~i~~lp~~lve~f~sT-l~~l 374 (597)
..|+++|++|||||||++++.+.... ...+..+.......+... .+..+.+|||+|.. .|... ...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~ 73 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE---------KLRPLWKSYT 73 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcH---------hHHHHHHHHh
Confidence 67999999999999999999876532 112111112212222221 34578999999982 23222 2235
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++..... +..++..+. .......|+++|+||+|+..
T Consensus 74 ~~~d~ii~v~D~~~~~~~~~---~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 74 RCTDGIVFVVDSVDVERMEE---AKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred ccCCEEEEEEECCCHHHHHH---HHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 67999999999987532222 222222211 11112359999999999853
No 107
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.61 E-value=2.3e-14 Score=136.47 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
+|+++|++|+|||||+++|.+.... . ...|.......+.. .+..+.+|||||.... .......+..+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~-~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~--------~~~~~~~~~~ad 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q-PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL--------RPLWKHYYLNTQ 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C-cCCcCceeEEEEEE-CCEEEEEEECCCChhc--------chHHHHHhccCC
Confidence 3789999999999999999986421 1 23343333334444 5678899999998321 112233457799
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcC-CCccCCCcEEEEEecCCCCC
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~P~IiVlNKiDl~~ 426 (597)
++++|+|++++... ..+..++..+- .......|+++|+||+|+..
T Consensus 69 ~ii~V~D~s~~~s~---~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 69 AVVFVVDSSHRDRV---SEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred EEEEEEeCCcHHHH---HHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 99999999875322 22223333321 11112359999999999853
No 108
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.61 E-value=1.7e-14 Score=139.71 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=75.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC-C-cccccccceecCceeEEEecCCceEEEeeccccccc-chhhHHHHHH----
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD-L-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD-LPLQLVDAFH---- 368 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~-v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~-lp~~lve~f~---- 368 (597)
..+.|+++|++|||||||+|+|++.. . .....++.|..... .. -+..+.+|||||+... .+....+.+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF--FE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE--Ee--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 46899999999999999999999864 2 22233333332221 11 2467899999997432 1222122221
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 369 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 369 sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+.....++++++|+|++.+... ....+..++...++ |+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~-~~~~i~~~l~~~~~------~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKE-LDLQMIEWLKEYGI------PVLIVLTKADKLKK 150 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCH-HHHHHHHHHHHcCC------cEEEEEECcccCCH
Confidence 122233345788899998775332 22344556665554 89999999998754
No 109
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.61 E-value=2.6e-14 Score=133.81 Aligned_cols=115 Identities=26% Similarity=0.209 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec---CCceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP---SGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~---~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
+|+++|.+|+|||||+++|++........+..+.+.....+.+. ....+.+|||||.. .+.. ....+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 72 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE---------EFDAITKAYY 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH---------HHHHhHHHHh
Confidence 69999999999999999999865322222222222222233332 23467899999972 2222 33456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++...... ..++..+... ....|+|+|+||+|+..
T Consensus 73 ~~~~~~v~v~d~~~~~s~~~l---~~~~~~~~~~-~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 73 RGAQACILVFSTTDRESFEAI---ESWKEKVEAE-CGDIPMVLVQTKIDLLD 120 (162)
T ss_pred cCCCEEEEEEECCCHHHHHHH---HHHHHHHHHh-CCCCCEEEEEEChhccc
Confidence 789999999999876433333 3333333211 12359999999999864
No 110
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.61 E-value=2.2e-14 Score=134.22 Aligned_cols=116 Identities=22% Similarity=0.174 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
.+|+++|.+|||||||++++.+.... .....++.+.....+.. ++. .+.+|||||..+ |.. ....+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQ---------FTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEE-CCEEEEEEEEECCCccc---------cchHHHHHh
Confidence 58999999999999999999976532 22222222222233444 443 456899999833 211 12335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++...+....+...+..... ....|+|+|+||+|+..
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKD--TENVPMVLVGNKCDLED 120 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccc
Confidence 679999999999876444444444444433321 12359999999999864
No 111
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.61 E-value=2.8e-14 Score=133.22 Aligned_cols=116 Identities=22% Similarity=0.161 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|++|+|||||+++|++.... .+..+.+.+........ ++ ..+.++||||+... . ......+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~------~--~~~~~~~~~ 71 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-DGEDVQLNILDTAGQEDY------A--AIRDNYHRS 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEE-CCEEEEEEEEECCChhhh------h--HHHHHHhhc
Confidence 6999999999999999999976532 23333332222222333 43 35789999998421 1 112234567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|.+++|+|++++........+...+..... ....|+++|+||+|+..
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 72 GEGFLLVFSITDMESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLED 119 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEcccccc
Confidence 8999999999876433333333333333211 12359999999999864
No 112
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=2.3e-14 Score=140.63 Aligned_cols=119 Identities=19% Similarity=0.130 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
+|+++|.+|+|||||+++|++........+....+.....+.+..+ ..+.+|||+|.. .+.. ....+.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~~ 72 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE---------RFGGMTRVYYR 72 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch---------hhhhhHHHHhC
Confidence 6899999999999999999986533222222222333334444323 356899999982 2222 234567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++...+....+...+... ........|+|+|+||+|+.+
T Consensus 73 ~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 73 GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 899999999998864444443333333321 222223459999999999864
No 113
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.61 E-value=1.5e-14 Score=136.89 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeE-EEec-CCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKS-VVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~-i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+++|++|+|||||++++++...... . ..|....... +... ....+.+|||||+.+.. ......+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-Y-IPTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-c-CCcchheEEEEEEECCEEEEEEEEECCCCCcch--------HHHHHHhh
Confidence 4799999999999999999998653221 1 1122222221 2221 12356799999984321 11223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+++.+..+.-......|+++|+||+|+..
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 799999999998875555556666666654322223459999999999854
No 114
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.60 E-value=1.5e-14 Score=134.68 Aligned_cols=117 Identities=21% Similarity=0.156 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+++|++|+|||||+|+|++..... ....++.+.....+.+ ++. .+.+|||+|.... . ......+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--~------~l~~~~~~ 71 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY--S------AMRDQYMR 71 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC-CcCCcchheEEEEEEE-CCEEEEEEEEECCCCcch--H------HHHHHHHh
Confidence 479999999999999999999865322 1212111222223333 343 3568999998321 1 11223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|.++.........+...+.... .....|+++|+||+|+..
T Consensus 72 ~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIHTYREQIKRVK--DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccc
Confidence 7999999999987533333333333333321 112359999999999864
No 115
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.60 E-value=4e-14 Score=133.91 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
.+|+++|++|+|||||++++.+........+....+.....+.. ++. .+.+|||||.. .|. .....+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~---------~~~~~~~~~~ 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQE---------RFRAVTRSYY 72 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcH---------HHHHHHHHHh
Confidence 57999999999999999999986532221111111111222333 333 56899999982 222 233456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++...+. +..++..+........|+++|.||+|+..
T Consensus 73 ~~~~~~ilv~d~~~~~s~~~---~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 73 RGAAGALMVYDITRRSTYNH---LSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred cCCCEEEEEEECCCHHHHHH---HHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 78999999999988644333 33444433111112358999999999854
No 116
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=8.6e-15 Score=149.02 Aligned_cols=129 Identities=26% Similarity=0.293 Sum_probs=91.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh---hHHHHH-HHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL---QLVDAF-HATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~---~lve~f-~sTl 371 (597)
....||++|.||+|||||.|.+.|..+.+.+....|+....-.+...+..++++.||||.+..-.+ .+...+ ....
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 568999999999999999999999998665554555444444444457889999999999875332 222223 2345
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
..+..||+++.|+|++++ .....-.++..|+.... .|-|+|+||+|.......
T Consensus 151 ~a~q~AD~vvVv~Das~t-r~~l~p~vl~~l~~ys~-----ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASAT-RTPLHPRVLHMLEEYSK-----IPSILVMNKIDKLKQKRL 203 (379)
T ss_pred HHHhhCCEEEEEEeccCC-cCccChHHHHHHHHHhc-----CCceeeccchhcchhhhH
Confidence 677789999999999864 22233345566666543 388999999998876543
No 117
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=3.1e-14 Score=129.91 Aligned_cols=119 Identities=32% Similarity=0.305 Sum_probs=81.3
Q ss_pred EEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEE
Q 007583 302 VVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLL 380 (597)
Q Consensus 302 LVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDli 380 (597)
++|++|||||||+|+|++.... .....+.|............+..+.++||||+......... ........+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~-~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE-REELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh-HHHHHHHHHHhCCEE
Confidence 5899999999999999998754 45555566666555555544778999999998654332211 112334456779999
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 381 VHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 381 L~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
++|+|++.+....... +...+...+ .|+++|+||+|+....
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~~------~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRERG------KPVLLVLNKIDLLPEE 120 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcC------CeEEEEEEccccCChh
Confidence 9999998874433332 233333333 3899999999987654
No 118
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.60 E-value=3.8e-14 Score=135.52 Aligned_cols=119 Identities=21% Similarity=0.179 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-----------CCceEEEeecccccccchhhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-----------SGRKVLLSDTVGFISDLPLQLVD 365 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-----------~g~~i~LiDTpG~i~~lp~~lve 365 (597)
..+|+++|.+|+|||||++++.+........+..+.+.....+.+. ....+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 4789999999999999999999865322211111112212222221 12457899999972
Q ss_pred HHHH-hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 366 AFHA-TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 366 ~f~s-Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+.. ....+..+|++++|+|++++........+...+..... ....|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 75 RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY--CENPDIVLCGNKADLED 134 (180)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEeCccchh
Confidence 2322 34456789999999999876433333333333332221 12348999999999864
No 119
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.60 E-value=2.5e-14 Score=134.15 Aligned_cols=116 Identities=22% Similarity=0.155 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHH-HHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAF-HATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~~ 376 (597)
+|+++|++|+|||||+++|++...........+.+.....+.+.+ ...+.+|||||+. .+ ......+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~~~~ 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE---------RFRSVTRSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH---------HHHHhHHHHhcC
Confidence 689999999999999999998764333332223233333344422 2356899999982 22 223345678
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++..... +..++..+........|+++|+||+|+..
T Consensus 73 ~~~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 73 AAGALLVYDITNRTSFEA---LPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred CCEEEEEEECCCHHHHHH---HHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 999999999988643333 33444433211122359999999999864
No 120
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.60 E-value=3.3e-14 Score=137.73 Aligned_cols=115 Identities=21% Similarity=0.173 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
.+.|+++|.+|||||||+++|.+..... ...|..++...+.. ++..+.++||||+... .......+..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~--------~~~~~~~~~~ 84 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEELAI-GNIKFTTFDLGGHQQA--------RRLWKDYFPE 84 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEEEEE-CCEEEEEEECCCCHHH--------HHHHHHHhCC
Confidence 3789999999999999999999865321 12355566666655 6788999999998321 1112234567
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++...... ..+.++++. ......|+++|+||+|+..
T Consensus 85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~---~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 85 VNGIVYLVDAYDKERFAESKRELDALLSD---EELATVPFLILGNKIDAPY 132 (184)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcC---hhhcCCCEEEEEeCccccC
Confidence 9999999999875322221 122222221 1112359999999999853
No 121
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.60 E-value=5.2e-14 Score=130.94 Aligned_cols=116 Identities=22% Similarity=0.186 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~ 376 (597)
+|+++|++|+|||||+|+|++...........+.......+.+.+ ...+.+|||+|... +.. .-..+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 72 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER---------YHALGPIYYRD 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHH---------HHHhhHHHhcc
Confidence 689999999999999999998764332221111222223333322 23578999999732 211 1223467
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++...+....+...+...... ..|+++|+||+|+..
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~ 119 (162)
T cd04123 73 ADGAILVYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLER 119 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccc
Confidence 99999999998864444444433334333221 359999999999864
No 122
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.60 E-value=1.4e-14 Score=139.48 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC-C-cccccccceecCceeEEEecCCceEEEeecccccccc-hhhHHHHHHH---
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD-L-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL-PLQLVDAFHA--- 369 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~-v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l-p~~lve~f~s--- 369 (597)
+.+.|+|+|++|+|||||+|+|++.. + .....++.|.+... ... +..+.++||||+.... +......+..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINF--FEV--NDGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEE--EEe--CCcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 56899999999999999999999875 2 22233334433322 222 2478999999985321 1111122221
Q ss_pred -hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 370 -TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 370 -Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+.....+|++++|+|++++... ....+..++...+ .|+++|+||+|+..+
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~-~~~~~~~~~~~~~------~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKE-LDLEMLEWLRERG------IPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCH-HHHHHHHHHHHcC------CCEEEEEECcccCCH
Confidence 22222346899999999876433 3334456665554 389999999998754
No 123
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.60 E-value=3.2e-14 Score=136.26 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVE 376 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~ 376 (597)
.+|+++|++|+|||||+++|++..... ...|.......+.+ ++..+.++||||+. .+.. ....+..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 82 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVEEIVY-KNIRFLMWDIGGQE---------SLRSSWNTYYTN 82 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEE-CCeEEEEEECCCCH---------HHHHHHHHHhhc
Confidence 689999999999999999998754321 13344444555555 57789999999983 2222 2334678
Q ss_pred cCEEEEEEeCCCCChH-HHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLE-EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~-~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++... .....+.+++...+. ...|+++|+||+|+..
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~---~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDL---RKAVLLVLANKQDLKG 130 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhh---cCCCEEEEEECCCCCC
Confidence 9999999999875322 222233334333222 2359999999999854
No 124
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.59 E-value=5.1e-14 Score=139.22 Aligned_cols=115 Identities=21% Similarity=0.313 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
.|+++|..|+|||||++++..........+..+.+.....+.+ ++ ..+.+|||+|. +.|.. ....+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGq---------e~~~~l~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQ---------ERFNSITSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCc---------hhhHHHHHHHhc
Confidence 5899999999999999999976532221111122333334555 44 45689999998 33332 334567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++.+.+....+...+..... ...|+|+|.||+|+..
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~---~~~piilVgNK~DL~~ 119 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMKMIDKYAS---EDAELLLVGNKLDCET 119 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECccccc
Confidence 89999999999987555555555555544322 2359999999999854
No 125
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=3e-14 Score=138.57 Aligned_cols=124 Identities=21% Similarity=0.319 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCC--CcccccccceecCceeEEEecCCceEEEeeccccc-ccchhhHHHHHHHhH
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSD--LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFI-SDLPLQLVDAFHATL 371 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~--v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i-~~lp~~lve~f~sTl 371 (597)
.+.+-||++|.+|+|||||+|+|++.. ..++..++.|.....- .+ +..+.++|.|||- ...|....+.+...+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff--~~--~~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF--EV--DDELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE--Ee--cCcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 467999999999999999999999966 4566666666544322 22 2238899999984 334555555554443
Q ss_pred HHH----HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 372 EEV----VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 372 ~~l----~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.++ ....++++++|+.++. ......+.++|...++ |+++|+||+|++....
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~-~~~D~em~~~l~~~~i------~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPP-KDLDREMIEFLLELGI------PVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCC-cHHHHHHHHHHHHcCC------CeEEEEEccccCChhH
Confidence 333 2356788899999984 4445577799999997 8999999999987543
No 126
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.59 E-value=3.2e-14 Score=133.23 Aligned_cols=116 Identities=23% Similarity=0.223 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHH-HhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFH-ATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l~~ 376 (597)
+|+++|++|||||||+|+|++........+..+.+.....+.+.. ...+.+|||||.. .+. .....+..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE---------RFRTLTSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch---------hhhhhhHHHhCC
Confidence 689999999999999999998764332222222222223333321 2467899999972 221 12334567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+|++++|+|++++...+....+...+..... ....|+++|+||+|+.
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYST--NNDIVKMLVGNKIDKE 119 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCC--CCCCcEEEEEECCccc
Confidence 9999999999876444444434444433321 2235899999999986
No 127
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.59 E-value=4.5e-14 Score=129.85 Aligned_cols=116 Identities=22% Similarity=0.174 Sum_probs=74.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
+|+++|++|+|||||+|+|++...........+.+.....+... ....+.++|+||+... .......+..+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~~ 73 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF--------RSITPSYYRGA 73 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHH--------HHHHHHHhcCC
Confidence 68999999999999999999877544432222223323333332 2356789999998321 11233455679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
|++++|+|++++........+...+..... ...|+++|+||+|+.
T Consensus 74 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~ 118 (159)
T cd00154 74 HGAILVYDITNRESFENLDKWLKELKEYAP---ENIPIILVGNKIDLE 118 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEEccccc
Confidence 999999999875333333334434433331 235999999999986
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.59 E-value=5.7e-14 Score=129.37 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=71.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH-HhHHHHHhcC
Q 007583 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH-ATLEEVVEAD 378 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l~~aD 378 (597)
|+++|++|||||||+|+|++........ .|.......+.. ++..+.++||||... +. .....+..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~D~~g~~~---------~~~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI--PTVGFNMRKVTK-GNVTLKVWDLGGQPR---------FRSMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCcc--CCCCcceEEEEE-CCEEEEEEECCCCHh---------HHHHHHHHHhcCC
Confidence 7999999999999999999976432221 232333334444 456789999999832 22 2234466799
Q ss_pred EEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 379 LLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 379 liL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++++|+|+++....... ..+..++.... ....|+++|+||+|+.+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPS---LEGIPLLVLGNKNDLPG 115 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChh---hcCCCEEEEEeCccccC
Confidence 99999999875222211 22222222111 12359999999999764
No 129
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.59 E-value=7e-14 Score=137.17 Aligned_cols=117 Identities=22% Similarity=0.208 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
....|+++|++|+|||||++++.+........+..+.+.....+.+ ++ ..+.+|||||... +.. ...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~---------~~~~~~~ 74 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER---------FRTITST 74 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchh---------HHHHHHH
Confidence 4589999999999999999999986532211111112222233433 33 3578999999732 221 234
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|++++...+. +..++..+... ....|+++|+||+|+..
T Consensus 75 ~~~~a~~iilv~D~~~~~s~~~---~~~~~~~i~~~-~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESFVN---VKRWLQEIEQN-CDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HhCCCcEEEEEEECCCHHHHHH---HHHHHHHHHHh-CCCCCEEEEEECccccc
Confidence 4567999999999987643333 33344433211 12348999999999864
No 130
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.59 E-value=1.8e-14 Score=144.77 Aligned_cols=115 Identities=24% Similarity=0.247 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc--------------cccccceecCce-----------------------eEEEe
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFS--------------DARLFATLDPRL-----------------------KSVVL 341 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~--------------~~~~f~Tld~t~-----------------------~~i~l 341 (597)
+|+++|+.++|||||+++|+...... +...+.|..... ..+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 37899999999999999998532110 000111110000 01112
Q ss_pred cCCceEEEeecccccccchhhHHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q 007583 342 PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVW 419 (597)
Q Consensus 342 ~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVl 419 (597)
.++..+.++||||+.. ..+.+...+. .+|++++|+|+..+ ...+...+..++...++ |+++|+
T Consensus 81 ~~~~~i~liDtpG~~~--------~~~~~~~~~~~~~~D~~llVvda~~g-~~~~d~~~l~~l~~~~i------p~ivvv 145 (224)
T cd04165 81 KSSKLVTFIDLAGHER--------YLKTTLFGLTGYAPDYAMLVVAANAG-IIGMTKEHLGLALALNI------PVFVVV 145 (224)
T ss_pred eCCcEEEEEECCCcHH--------HHHHHHHhhcccCCCEEEEEEECCCC-CcHHHHHHHHHHHHcCC------CEEEEE
Confidence 2467889999999832 1233444443 68999999999876 34566667778888886 899999
Q ss_pred ecCCCCCcc
Q 007583 420 NKIDYHDEE 428 (597)
Q Consensus 420 NKiDl~~~~ 428 (597)
||+|+.+..
T Consensus 146 NK~D~~~~~ 154 (224)
T cd04165 146 TKIDLAPAN 154 (224)
T ss_pred ECccccCHH
Confidence 999997643
No 131
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.59 E-value=3.9e-14 Score=132.35 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
+|+++|++|+|||||++++++.... ....|.......+.+ .+..+.+|||||+... . ......+..+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~---~~~~~~~~~~~ 68 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----R---PLWKHYYENTN 68 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----H---HHHHHHhccCC
Confidence 3899999999999999999987621 223344444455555 5678899999998431 0 11223456799
Q ss_pred EEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 379 LLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 379 liL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++++|+|++++...... ..+..++.... ....|+++|+||+|+..
T Consensus 69 ~~i~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 69 GIIFVVDSSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPG 114 (158)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCcc
Confidence 99999999876322222 22222222221 23459999999999865
No 132
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=7.1e-14 Score=135.32 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=72.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l~ 375 (597)
+|+++|.+|+|||||+++|++........+..+.+.....+.+ ++ ..+.+|||+|.. .+. .....+.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~---------~~~~~~~~~~~ 71 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQE---------RFRSLNNSYYR 71 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcH---------HHHhhHHHHcc
Confidence 6999999999999999999987643222222222222333444 33 345799999972 222 2334567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+.... ....|+|+|+||+|+..
T Consensus 72 ~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~---~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 72 GAHGYLLVYDVTDQESFENLKFWINEINRYA---RENVIKVIVANKSDLVN 119 (188)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECCCCcc
Confidence 8999999999987643333333333333322 12258999999999864
No 133
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.59 E-value=5.9e-14 Score=132.62 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=71.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~a 377 (597)
+|+++|.+|+|||||+++|...... . ...|+......+.. ....+.+|||+|+. .+.. ....+..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~--~~pt~g~~~~~~~~-~~~~~~l~D~~G~~---------~~~~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQD---------KIRPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-c--cCCCCCcceEEEEE-CCEEEEEEECCCCH---------hHHHHHHHHhcCC
Confidence 6899999999999999999654422 1 12233333334444 56788999999983 2222 23346789
Q ss_pred CEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|+++........ .+.+++..-. ....|+++|+||+|+.+
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDE---LRDAVLLVFANKQDLPN 115 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHH---hcCCCEEEEEECCCCCC
Confidence 9999999998753222222 2222222211 12359999999999854
No 134
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.58 E-value=7.5e-14 Score=130.78 Aligned_cols=117 Identities=20% Similarity=0.134 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
.+|+++|++|+|||||+|+|++........+..........+.+.. +..+.+|||||..+ +.. ....+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER---------YRSLAPMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH---------HHHHHHHHhc
Confidence 4799999999999999999999774331111111111122333321 23568999999732 222 223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~ 120 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNAS---PNIIIALVGNKADLES 120 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccc
Confidence 79999999999876443444444344433331 2358999999999864
No 135
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.58 E-value=4.5e-14 Score=133.85 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe-cCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL-PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l-~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
+|+++|.+|||||||+++|.+...... . ..+.........+ ..+..+.+|||||.... .......+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~a 71 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-V-PRVLPEITIPADVTPERVPTTIVDTSSRPQD--------RANLAAEIRKA 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-C-CCcccceEeeeeecCCeEEEEEEeCCCchhh--------hHHHhhhcccC
Confidence 689999999999999999998664222 1 2222222222222 13456789999998321 11223345789
Q ss_pred CEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 378 DLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
|++++|+|++++...... ..+...++.... ..|+++|+||+|+.+.
T Consensus 72 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~----~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 72 NVICLVYSVDRPSTLERIRTKWLPLIRRLGV----KVPIILVGNKSDLRDG 118 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhcccc
Confidence 999999999886544443 234444554331 3599999999998653
No 136
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.58 E-value=6.6e-14 Score=133.69 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
..+|+++|++|+|||||+++|...... . . ..|.......+.. .+..+.+|||+|... +.. ....+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~-~-~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~---------~~~~~~~~~~ 75 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-T-T-IPTVGFNVETVTY-KNVKFNVWDVGGQDK---------IRPLWRHYYT 75 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-c-c-cCCcccceEEEEE-CCEEEEEEECCCCHH---------HHHHHHHHhc
Confidence 478999999999999999999865421 1 1 1232233333444 567889999999832 222 223457
Q ss_pred hcCEEEEEEeCCCCChHH-HHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++.... ....+.+++..... ...|+++|+||+|+..
T Consensus 76 ~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~ 124 (168)
T cd04149 76 GTQGLIFVVDSADRDRIDEARQELHRIINDREM---RDALLLVFANKQDLPD 124 (168)
T ss_pred cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhh---cCCcEEEEEECcCCcc
Confidence 799999999998753222 22222233322111 2359999999999854
No 137
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.58 E-value=5.5e-14 Score=132.33 Aligned_cols=117 Identities=21% Similarity=0.133 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+++|.+|||||||+++++.... ......++.+.....+.+ ++. .+.+|||||+... .......+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~ 71 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF--------TAMRDLYMK 71 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEE-CCEEEEEEEEECCCcccc--------hhHHHHHHh
Confidence 4799999999999999999986432 222222222222223444 443 4568999998321 111223466
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|.++....+....+...+.... .....|+++|+||+|+..
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 72 NGQGFVLVYSITAQSTFNDLQDLREQILRVK--DTEDVPMILVGNKCDLED 120 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCcchh
Confidence 7999999999987543333333333332221 122359999999999864
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.58 E-value=2.1e-14 Score=132.15 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=67.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
+|+++|.+|+|||||+|+|++..... .++ ..+.+ .+ .++||||.... ....+......+..+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~--------~~t-~~~~~-~~---~~iDt~G~~~~----~~~~~~~~~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY--------KKT-QAVEY-ND---GAIDTPGEYVE----NRRLYSALIVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc--------ccc-eeEEE-cC---eeecCchhhhh----hHHHHHHHHHHhhcCC
Confidence 68999999999999999999875310 111 12333 12 68999998321 1223455555688999
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++++|+|++++..... . .++..++ .|+|+|+||+|+.+
T Consensus 65 ~vilv~d~~~~~s~~~-~---~~~~~~~------~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 65 VIALVQSATDPESRFP-P---GFASIFV------KPVIGLVTKIDLAE 102 (142)
T ss_pred EEEEEecCCCCCcCCC-h---hHHHhcc------CCeEEEEEeeccCC
Confidence 9999999988743322 1 2222222 38999999999853
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.58 E-value=7.6e-14 Score=132.39 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
+..+|+++|++|||||||+++|.+..... ...|.......+.+ ++..+.++||+|... +.. ....+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~-~~~~~~~~D~~G~~~---------~~~~~~~~~ 79 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQS-DGFKLNVWDIGGQRA---------IRPYWRNYF 79 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEE-CCEEEEEEECCCCHH---------HHHHHHHHh
Confidence 34789999999999999999999975321 11222222335555 578899999999832 211 22335
Q ss_pred HhcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|+++...... ...+...+... .....|+++|+||+|+...
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEE---KLAGVPVLVFANKQDLATA 130 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECCCCccC
Confidence 67999999999986422221 12222222211 1123599999999998653
No 140
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.57 E-value=1.1e-13 Score=130.05 Aligned_cols=115 Identities=21% Similarity=0.257 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC-Ccccccccce-ecCceeEEEecC--CceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD-LFSDARLFAT-LDPRLKSVVLPS--GRKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~-v~~~~~~f~T-ld~t~~~i~l~~--g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
+|+++|++|||||||+++|.+.. .......+++ .+.....+.+.. ...+.+|||||.. .+.. ....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE---------LYSDMVSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH---------HHHHHHHHH
Confidence 68999999999999999998642 2223322222 222222333322 3567899999972 2211 2334
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+.+.+.... ...|+++|+||+|+.+
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTAS----KHMPGVLVGNKMDLAD 121 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 567999999999987643333333333333322 2359999999999854
No 141
>PTZ00369 Ras-like protein; Provisional
Probab=99.57 E-value=5.5e-14 Score=136.56 Aligned_cols=117 Identities=20% Similarity=0.150 Sum_probs=73.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc-eeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR-LKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t-~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
..+|+++|++|+|||||++++.+...... . ..|.... ...+.+ ++. .+.+|||||+... ..+ ....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~-~-~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--~~l------~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDE-Y-DPTIEDSYRKQCVI-DEETCLLDILDTAGQEEY--SAM------RDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcC-c-CCchhhEEEEEEEE-CCEEEEEEEEeCCCCccc--hhh------HHHH
Confidence 47999999999999999999998653211 1 1121111 223334 333 4568999998432 111 1234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++...+....+...+..... ....|+++|.||+|+..
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~--~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKD--KDRVPMILVGNKCDLDS 124 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccc
Confidence 5679999999999987544444444443433221 12359999999999854
No 142
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.57 E-value=1.1e-13 Score=132.51 Aligned_cols=116 Identities=21% Similarity=0.166 Sum_probs=71.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l~ 375 (597)
+|+++|.+|+|||||++++.+........+....+.....+.+ ++ ..+.+|||||.. .|. .....+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQE---------RFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChH---------HHHhhHHHHhc
Confidence 5899999999999999999987532221111111222233433 33 357899999983 232 2334567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+...... ...|+++|.||+|+.+
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDP--SSVLLFLVGTKKDLSS 120 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEChhcCc
Confidence 899999999998753333333333222221221 1247899999999854
No 143
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=3.6e-14 Score=153.43 Aligned_cols=117 Identities=25% Similarity=0.293 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
+.|+|.|+||...|||||+.+|-+..+.....-+.|.....-.+.+++|..+.|.||||+ .+|.+ ..+..
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH---------aAF~aMRaRGA 222 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH---------AAFSAMRARGA 222 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcH---------HHHHHHHhccC
Confidence 579999999999999999999999988777767777777777788899999999999999 56643 45566
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+|++++||-+.++. ..|+.......+..+. |+|+++||||+..++
T Consensus 223 ~vtDIvVLVVAadDGV-mpQT~EaIkhAk~A~V------piVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 223 NVTDIVVLVVAADDGV-MPQTLEAIKHAKSANV------PIVVAINKIDKPGAN 269 (683)
T ss_pred ccccEEEEEEEccCCc-cHhHHHHHHHHHhcCC------CEEEEEeccCCCCCC
Confidence 7789999999998884 4454444455555554 999999999987654
No 144
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.57 E-value=1.2e-13 Score=132.62 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
..+|+++|..|+|||||+++|..... .. ...|+......+.. .+..+.+|||+|.. .+.. ....+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~--~~~t~~~~~~~~~~-~~~~l~l~D~~G~~---------~~~~~~~~~~~ 79 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VT--TIPTIGFNVETVTY-KNISFTVWDVGGQD---------KIRPLWRHYYT 79 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccccceEEEEE-CCEEEEEEECCCCh---------hhHHHHHHHhC
Confidence 47899999999999999999964332 11 11233332333444 56788999999983 2322 233467
Q ss_pred hcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++...+. .+.+..++..... ...|+++|+||+|+.+
T Consensus 80 ~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~---~~~piilv~NK~Dl~~ 128 (175)
T smart00177 80 NTQGLIFVVDSNDRDRIDEAREELHRMLNEDEL---RDAVILVFANKQDLPD 128 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhh---cCCcEEEEEeCcCccc
Confidence 8999999999987632222 2222222222111 2359999999999854
No 145
>CHL00071 tufA elongation factor Tu
Probab=99.57 E-value=2.2e-14 Score=156.22 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+++|++|+|||||+++|++... ..+...+.|.+.....+.. ++..+.++||||+.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA--- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH---
Confidence 458899999999999999999997521 1122355566654444433 56788999999982
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCCc
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDE 427 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~~ 427 (597)
.....+...+..+|++++|+|+..+ ...+...+...+..+++ | +|+|+||+|+++.
T Consensus 87 -----~~~~~~~~~~~~~D~~ilVvda~~g-~~~qt~~~~~~~~~~g~------~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 87 -----DYVKNMITGAAQMDGAILVVSAADG-PMPQTKEHILLAKQVGV------PNIVVFLNKEDQVDD 143 (409)
T ss_pred -----HHHHHHHHHHHhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCC------CEEEEEEEccCCCCH
Confidence 2234556677889999999999876 45566666677877776 6 7789999999753
No 146
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.57 E-value=3.3e-14 Score=156.41 Aligned_cols=119 Identities=21% Similarity=0.216 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEE---------------EecC--------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSV---------------VLPS-------------- 343 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i---------------~l~~-------------- 343 (597)
...+|+++|+..+|||||+.+|+|... ..+...+.|++...... .++.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 457999999999999999999998653 22333333433211111 0111
Q ss_pred ---CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEe
Q 007583 344 ---GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 344 ---g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlN 420 (597)
...+.++||||+. ...+.++..+..+|.+++|+|+..+....+....+.++..+++ +|+|+|+|
T Consensus 113 ~~~~~~i~~IDtPGH~--------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi-----~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD--------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKL-----KHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHH--------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCC-----CcEEEEEe
Confidence 2368899999982 2235567778889999999999875334444455567777887 36899999
Q ss_pred cCCCCCc
Q 007583 421 KIDYHDE 427 (597)
Q Consensus 421 KiDl~~~ 427 (597)
|+|+++.
T Consensus 180 KiDlv~~ 186 (460)
T PTZ00327 180 KIDLVKE 186 (460)
T ss_pred cccccCH
Confidence 9999753
No 147
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=7.6e-16 Score=167.81 Aligned_cols=246 Identities=17% Similarity=0.117 Sum_probs=177.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC------------------cccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL------------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v------------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
.+++|+++-|-.|||||+-++++-... ..+.+.+.|+........| ....+.++||||++.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGHVD 116 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCcee
Confidence 457899999999999999999874321 1233445555555555666 578999999999975
Q ss_pred cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-cccccc
Q 007583 358 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~ 436 (597)
.- ...-++++..|.++.|+|+..+ .+.+...++..+...++ |.|.++||+|+...... .++++.
T Consensus 117 FT--------~EVeRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~ry~v------P~i~FiNKmDRmGa~~~~~l~~i~ 181 (721)
T KOG0465|consen 117 FT--------FEVERALRVLDGAVLVLDAVAG-VESQTETVWRQMKRYNV------PRICFINKMDRMGASPFRTLNQIR 181 (721)
T ss_pred EE--------EEehhhhhhccCeEEEEEcccc-eehhhHHHHHHHHhcCC------CeEEEEehhhhcCCChHHHHHHHH
Confidence 21 1112345668999999999887 78899999999999987 99999999999987643 244444
Q ss_pred cccc--ccc-----ccccccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhh
Q 007583 437 GDDI--SNF-----SRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEF 509 (597)
Q Consensus 437 ~~~~--~~~-----~sa~~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y 509 (597)
..+. +.+ -+.....|+.+|+....+....+.+.....+.+++++.+.+.+.+.+++|-.. ..|+++ .+.|
T Consensus 182 ~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~la-d~DE~l--~e~f 258 (721)
T KOG0465|consen 182 TKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLA-DVDETL--AEMF 258 (721)
T ss_pred hhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHh-hhhHHH--HHHH
Confidence 4331 111 12235667778876666655444444444567788888888888888887665 333322 3668
Q ss_pred hcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 510 WNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
++..+++...+....+...-.+.|.| |+|+||..+.||+.||++|.+.|..
T Consensus 259 Lee~~ps~~~l~~aIRr~Ti~r~fvP----Vl~GSAlKNkGVQPlLDAVvdYLPs 309 (721)
T KOG0465|consen 259 LEEEEPSAQQLKAAIRRATIKRSFVP----VLCGSALKNKGVQPLLDAVVDYLPS 309 (721)
T ss_pred hccCCCCHHHHHHHHHHHHhhcceee----EEechhhcccCcchHHHHHHHhCCC
Confidence 88877777777777777777777777 9999999999999999999998754
No 148
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.56 E-value=1.1e-14 Score=159.43 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcc-------------------------------cccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-------------------------------DARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~-------------------------------~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|++|+|||||+++|+.....+ +...+.|.+.....+.. ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 55899999999999999999998543211 12456677776666665 67
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCC--CChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTA--PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~--~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
..+.++||||+... ...+...+..+|++++|+|+++ + ...+......++..++. .|+++|+||+
T Consensus 84 ~~i~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvDa~~~~~-~~~~~~~~~~~~~~~~~-----~~iivviNK~ 149 (425)
T PRK12317 84 YYFTIVDCPGHRDF--------VKNMITGASQADAAVLVVAADDAGG-VMPQTREHVFLARTLGI-----NQLIVAINKM 149 (425)
T ss_pred eEEEEEECCCcccc--------hhhHhhchhcCCEEEEEEEcccCCC-CCcchHHHHHHHHHcCC-----CeEEEEEEcc
Confidence 88999999998321 1233445677999999999987 4 23333444455666664 3689999999
Q ss_pred CCCC
Q 007583 423 DYHD 426 (597)
Q Consensus 423 Dl~~ 426 (597)
|+.+
T Consensus 150 Dl~~ 153 (425)
T PRK12317 150 DAVN 153 (425)
T ss_pred cccc
Confidence 9875
No 149
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.56 E-value=5.8e-14 Score=159.05 Aligned_cols=114 Identities=22% Similarity=0.228 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc----------------ccccccceecCceeEEEecCCceEEEeecccccccchh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL 361 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~----------------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~ 361 (597)
++|+|+|+.++|||||+++|+...-. .+...+.|+......+.+ ++..+.++||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~D---- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHAD---- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHH----
Confidence 68999999999999999999853210 122345566665566776 788999999999932
Q ss_pred hHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 362 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 362 ~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+. ......+..+|.+++|+|++.+ ...+...++..+...++ |+|+|+||+|+.+.
T Consensus 77 -F~---~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~i------p~IVviNKiD~~~a 131 (594)
T TIGR01394 77 -FG---GEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALELGL------KPIVVINKIDRPSA 131 (594)
T ss_pred -HH---HHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHCCC------CEEEEEECCCCCCc
Confidence 11 2345567789999999999876 45666677777777775 88999999998653
No 150
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.56 E-value=1.5e-13 Score=130.06 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=74.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
...+|+++|.+|+|||||++++++...........+.+.....+.+ ++. .+.+|||||.. .+.. ...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~---------~~~~~~~~ 73 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQE---------RFRSLRTP 73 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChH---------HHHHhHHH
Confidence 4578999999999999999999976543322211112222223333 333 56789999983 2222 233
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHH-HHcCCCccCCCcEEEEEecCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVL-QQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL-~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
.+..+|++++|+|++++........+...+ ...........|+++|+||+|+.
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 567799999999998764444443333322 22222222345999999999985
No 151
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.55 E-value=5e-14 Score=140.69 Aligned_cols=115 Identities=22% Similarity=0.186 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-------------------------------cccccccceecCceeEEEecCCceE
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPSGRKV 347 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~g~~i 347 (597)
+|+++|+.|+|||||+.+|+...- ..+...+.|.+.....+.+ ++..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 489999999999999999963210 1122344566666666666 78899
Q ss_pred EEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCC------hHHHHHHHHHHHHHcCCCccCCCcEEEEEec
Q 007583 348 LLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN------LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 421 (597)
Q Consensus 348 ~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~------~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNK 421 (597)
.++||||+.. ....+...+..+|++++|+|++++. ...+....+..+...+. +|+|+|+||
T Consensus 80 ~liDtpG~~~--------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~iiivvNK 146 (219)
T cd01883 80 TILDAPGHRD--------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGV-----KQLIVAVNK 146 (219)
T ss_pred EEEECCChHH--------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCC-----CeEEEEEEc
Confidence 9999999832 1233455667799999999998741 22233333444555553 479999999
Q ss_pred CCCCCc
Q 007583 422 IDYHDE 427 (597)
Q Consensus 422 iDl~~~ 427 (597)
+|+...
T Consensus 147 ~Dl~~~ 152 (219)
T cd01883 147 MDDVTV 152 (219)
T ss_pred cccccc
Confidence 998743
No 152
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.55 E-value=2.7e-13 Score=131.31 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=73.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
..+|+++|..|+|||||+++|...... . ...|.......+.. .+..+.+|||||+ +.+.. ....+.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~--~~pt~g~~~~~~~~-~~~~~~i~D~~Gq---------~~~~~~~~~~~~ 83 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEY-KNISFTVWDVGGQ---------DKIRPLWRHYFQ 83 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-c--ccCCcceeEEEEEE-CCEEEEEEECCCC---------HHHHHHHHHHhc
Confidence 368999999999999999999864421 1 12232233333444 5678899999998 22322 233467
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++.. ...+...+..+ .-......|+++|+||+|+.+
T Consensus 84 ~a~~iI~V~D~s~~~s---~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 84 NTQGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred cCCEEEEEEeCCcHHH---HHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 8999999999987532 22222333332 111112359999999999854
No 153
>PRK12736 elongation factor Tu; Reviewed
Probab=99.55 E-value=7.9e-14 Score=151.21 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+++|+.++|||||+++|++... ..+...+.|.+.....+.. ++..+.++||||+.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA--- 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH---
Confidence 458999999999999999999987321 1122445555554333322 56788999999983
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~ 426 (597)
+....+...+..+|++++|+|+..+ ...+....+.++...++ | +|+|+||+|+++
T Consensus 87 -----~f~~~~~~~~~~~d~~llVvd~~~g-~~~~t~~~~~~~~~~g~------~~~IvviNK~D~~~ 142 (394)
T PRK12736 87 -----DYVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQVGV------PYLVVFLNKVDLVD 142 (394)
T ss_pred -----HHHHHHHHHHhhCCEEEEEEECCCC-CchhHHHHHHHHHHcCC------CEEEEEEEecCCcc
Confidence 2234556667789999999999876 34555556677777776 5 678999999874
No 154
>PLN03110 Rab GTPase; Provisional
Probab=99.55 E-value=2.4e-13 Score=135.38 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=78.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
...+|+++|++|+|||||+++|++........+....+.....+.+ ++ ..+.+|||+|..+ |.. ...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~---------~~~~~~~ 80 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQER---------YRAITSA 80 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHH---------HHHHHHH
Confidence 3468999999999999999999987644333333333444445555 33 3678999999832 222 234
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..++++++|+|++++...+....+...+.... ....|+++|+||+|+..
T Consensus 81 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA---DSNIVIMMAGNKSDLNH 131 (216)
T ss_pred HhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCeEEEEEEChhccc
Confidence 5678999999999987644444444444443332 12359999999999853
No 155
>PLN03118 Rab family protein; Provisional
Probab=99.55 E-value=2.3e-13 Score=134.59 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=73.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
..+|+++|++|+|||||+++|++...... .+..+.+.....+.+.+ ...+.+|||||+.. |. .....+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~---------~~~~~~~~~ 83 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQER---------FRTLTSSYY 83 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECCEEEEEEEEECCCchh---------hHHHHHHHH
Confidence 47899999999999999999998764211 11111222223344422 24678999999832 21 123446
Q ss_pred HhcCEEEEEEeCCCCChHHHHHH-HHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTT-VLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~-v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........ +...+..... ....|+++|.||+|+..
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~--~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYST--NQDCVKMLVGNKVDRES 134 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccc
Confidence 67999999999987643333332 2233332221 12248999999999864
No 156
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.55 E-value=1.4e-13 Score=129.38 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+++|.+|+|||||++++.+....... ..+..+.....+.+ ++. .+.+|||||..+.. .+ ....+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--~~------~~~~~~ 71 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY-DPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA--SM------RDLYIK 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCchhheEEEEEEE-CCEEEEEEEEECCCccccc--ch------HHHHHh
Confidence 47999999999999999999976533221 11111222233444 443 45689999973321 11 122356
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+....- ....|+++|+||+|+..
T Consensus 72 ~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG--YEKVPIILVGNKVDLES 120 (163)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccchh
Confidence 79999999999886443444444444444321 12359999999999754
No 157
>PRK10218 GTP-binding protein; Provisional
Probab=99.54 E-value=8.3e-14 Score=157.81 Aligned_cols=116 Identities=19% Similarity=0.147 Sum_probs=84.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc----------------ccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~----------------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
.+++|+|+|+.++|||||+++|+...-. .+...+.|.......+.+ ++..+.+|||||+...
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df- 81 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADF- 81 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchh-
Confidence 5789999999999999999999963211 112234455544455555 6788999999998431
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
...+...+..+|++++|+|++++ ...+...++..+...++ |.|+|+||+|+...
T Consensus 82 -------~~~v~~~l~~aDg~ILVVDa~~G-~~~qt~~~l~~a~~~gi------p~IVviNKiD~~~a 135 (607)
T PRK10218 82 -------GGEVERVMSMVDSVLLVVDAFDG-PMPQTRFVTKKAFAYGL------KPIVVINKVDRPGA 135 (607)
T ss_pred -------HHHHHHHHHhCCEEEEEEecccC-ccHHHHHHHHHHHHcCC------CEEEEEECcCCCCC
Confidence 12234456789999999999886 44556666677767665 88999999998754
No 158
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.54 E-value=2.2e-13 Score=126.43 Aligned_cols=117 Identities=19% Similarity=0.115 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
+|+++|++|||||||+++|++.. ......+.+.+.......... ...+.++|+||.... .......+..+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~~ 71 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF--------SAMRDLYIRQG 71 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH--------HHHHHHHHhcC
Confidence 48999999999999999999876 333333333333333344421 245789999998431 11223346679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|.+++........++..+...... ...|+++|+||+|+..
T Consensus 72 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 72 DGFILVYSITDRESFEEIKGYREQILRVKDD--EDIPIVLVGNKCDLEN 118 (160)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEECCcccc
Confidence 9999999998764444444444444433211 2359999999999865
No 159
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.54 E-value=6.1e-14 Score=152.65 Aligned_cols=119 Identities=22% Similarity=0.244 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEEE--------------e-----------cCCceE
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVV--------------L-----------PSGRKV 347 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i~--------------l-----------~~g~~i 347 (597)
...+|+++|+.|+|||||+++|++... ..+.....|.+....... . +.+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 347899999999999999999987532 111112223222111100 0 014578
Q ss_pred EEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 348 LLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 348 ~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.++||||+.. ....+...+..+|++++|+|++++....+.......+..+++ +|+|+|+||+|+.+.
T Consensus 83 ~liDtPGh~~--------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi-----~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHET--------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGI-----KNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHH--------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCC-----CeEEEEEEccccCCH
Confidence 9999999822 124456667789999999999976313333344456666665 378999999998754
No 160
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=1.1e-13 Score=128.64 Aligned_cols=118 Identities=21% Similarity=0.240 Sum_probs=72.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC--CcccccccceecCceeEEEecCCceEEEeeccccccc-chhhHHHHH----HHhHH
Q 007583 300 VAVVGYTNAGKSTLVSALSDSD--LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD-LPLQLVDAF----HATLE 372 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~--v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~-lp~~lve~f----~sTl~ 372 (597)
|+++|++|||||||+|.|++.. .......+.|.... ... ....+.++||||+... .|....+.+ ...+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN--FFN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE--EEE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999533 22333333333221 122 2338899999998542 111111222 12222
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
....++++++|+|...+. ......+.+++...+. |+++|+||+|+....
T Consensus 78 ~~~~~~~~~~v~d~~~~~-~~~~~~~~~~l~~~~~------~vi~v~nK~D~~~~~ 126 (170)
T cd01876 78 NRENLKGVVLLIDSRHGP-TEIDLEMLDWLEELGI------PFLVVLTKADKLKKS 126 (170)
T ss_pred hChhhhEEEEEEEcCcCC-CHhHHHHHHHHHHcCC------CEEEEEEchhcCChH
Confidence 223467889999987653 2333445677777653 899999999986543
No 161
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.54 E-value=4.2e-14 Score=160.43 Aligned_cols=113 Identities=26% Similarity=0.292 Sum_probs=80.2
Q ss_pred cCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEE
Q 007583 304 GYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHV 383 (597)
Q Consensus 304 G~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~V 383 (597)
|.+|+|||||+|+|+|....+.+.++.|.+...+.+.+ ++..+.++||||+.+..+....+...........+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 89999999999999998877777888888887777777 67789999999997643332222222222223468999999
Q ss_pred EeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 384 LDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 384 vDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|+++. +.......+ +.+.+ .|+++|+||+|+.+
T Consensus 80 vDat~l--er~l~l~~q-l~~~~------~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 80 VDASNL--ERNLYLTLQ-LLELG------IPMILALNLVDEAE 113 (591)
T ss_pred ecCCcc--hhhHHHHHH-HHhcC------CCEEEEEehhHHHH
Confidence 999874 233222222 22333 49999999999853
No 162
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=3.1e-13 Score=134.24 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
.+|+++|.+|+|||||+++|++........+..+.+.....+.+.++ ..+.+|||+|... +. .....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 73 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER---------FRSITRSYY 73 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh---------HHHHHHHHh
Confidence 68999999999999999999987643332222222333334444334 3578999999832 22 223456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC-ccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~-~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++...... .+++..+... .....|+++|.||+|+..
T Consensus 74 ~~~d~iilv~D~~~~~Sf~~l---~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 74 RNSVGVLLVFDITNRESFEHV---HDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred cCCcEEEEEEECCCHHHHHHH---HHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 779999999999886433333 3333332111 112247899999999865
No 163
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=3.8e-13 Score=130.27 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVE 376 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~ 376 (597)
.+|+++|++|+|||||++++...... . . ..|.......+.. .+..+.+|||+|.. .+.. ....+..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~-~-~-~~T~~~~~~~~~~-~~~~~~l~D~~G~~---------~~~~~~~~~~~~ 84 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV-T-T-IPTIGFNVETVEY-KNLKFTMWDVGGQD---------KLRPLWRHYYQN 84 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c-c-CCccccceEEEEE-CCEEEEEEECCCCH---------hHHHHHHHHhcC
Confidence 68999999999999999999654321 1 1 1233333334444 66788999999982 2322 3345678
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++.... .+...+..+ ........|+++|+||+|+..
T Consensus 85 ad~iI~v~D~t~~~s~~---~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 85 TNGLIFVVDSNDRERIG---DAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CCEEEEEEeCCCHHHHH---HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 99999999998753222 222222222 111122359999999999854
No 164
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.54 E-value=1.2e-13 Score=145.42 Aligned_cols=88 Identities=28% Similarity=0.363 Sum_probs=68.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-----------------------CCceEEEeeccccc
Q 007583 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-----------------------SGRKVLLSDTVGFI 356 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-----------------------~g~~i~LiDTpG~i 356 (597)
|+|+|.+|+|||||+|+|++....+.+++|+|.+|+.+...++ ...++.++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999988888899999999998766641 12468899999997
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTA 388 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~ 388 (597)
...... ...-...+..++.||+++||+|++.
T Consensus 81 ~ga~~~-~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEG-KGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccch-hhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 543211 1111345778899999999999974
No 165
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.54 E-value=1.8e-13 Score=133.98 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
+|+++|++|+|||||++++++..... ....++.+.....+.+ ++ ..+.++||||+.. |.. ....+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~---------~~~~~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP-KYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYS---------FPAMRKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cCCCchhhheeEEEEE-CCEEEEEEEEECCCchh---------hhHHHHHHhh
Confidence 38999999999999999999865322 1112222222233444 44 4678999999842 211 123467
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++...+....+...+..... ....|+|+|+||+|+..
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKE--DKFVPIVVVGNKADSLE 118 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEEcccccc
Confidence 79999999999876444434333333333221 12359999999999865
No 166
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.54 E-value=2.6e-13 Score=131.61 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc--eeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR--LKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t--~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
+|+++|.+|+|||||+++|++........ ..|.... ...+.+ ++. .+.+|||+|..+ +.. ....
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~---------~~~~~~~~ 70 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPY-QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSER---------YEAMSRIY 70 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCc-ccceeeEEEEEEEEE-CCEEEEEEEEECCCchh---------hhhhhHhh
Confidence 69999999999999999999865332111 1222211 223444 343 356999999832 211 1223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++...+....+...+.... ...|+++|+||+|+...
T Consensus 71 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 71 YRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE----EHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC----CCCCEEEEEEccccccc
Confidence 457999999999987633333333333333321 13599999999998643
No 167
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.53 E-value=3e-13 Score=129.69 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc-eeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR-LKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t-~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
.+|+++|..|+|||||++++.+...... ...|+... ...+.+ ++ ..+.+|||+|... |.. ....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~--~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~l~~~~ 70 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDY--HDPTIEDAYKQQARI-DNEPALLDILDTAGQAE---------FTAMRDQY 70 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC--cCCcccceEEEEEEE-CCEEEEEEEEeCCCchh---------hHHHhHHH
Confidence 5799999999999999999987653221 11222221 123344 44 3567899999832 211 2234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+...... ...|+|+|.||+|+..
T Consensus 71 ~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~--~~~piilvgNK~Dl~~ 121 (172)
T cd04141 71 MRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLT--EDIPLVLVGNKVDLES 121 (172)
T ss_pred hhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCC--CCCCEEEEEEChhhhh
Confidence 66799999999999876655555555556554321 2359999999999854
No 168
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.53 E-value=3e-13 Score=128.64 Aligned_cols=118 Identities=23% Similarity=0.218 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH--hHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA--TLE 372 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s--Tl~ 372 (597)
..+|+++|++|+|||||++++++........+..+.+.....+.+ ++ ..+.+|||+|.. .|.. ...
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 71 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQE---------RFRKSMVQH 71 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChH---------HHHHhhHHH
Confidence 368999999999999999999976533222222222222333444 33 467899999973 2321 122
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|++++........+...+...... ...|+|+|+||+|+..
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 72 YYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP--NEVPRILVGNKCDLRE 123 (170)
T ss_pred hhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC--CCCCEEEEEECccchh
Confidence 356799999999998875545444444444443321 2359999999999864
No 169
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.53 E-value=3.3e-13 Score=135.26 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=72.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
+|+++|.+|+|||||++++.+..... . ..|+........+ ....+.+|||+|+... .. .....+..+|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~-~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~--~~------l~~~~~~~ad 69 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--T-VSTVGGAFYLKQW-GPYNISIWDTAGREQF--HG------LGSMYCRGAA 69 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--C-CCccceEEEEEEe-eEEEEEEEeCCCcccc--hh------hHHHHhccCC
Confidence 68999999999999999999876321 1 1222222222222 3456789999998432 11 1223466899
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
++++|+|++++........++..+..... ...|+|+|.||+|+...
T Consensus 70 ~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~---~~~piIlVgNK~DL~~~ 115 (220)
T cd04126 70 AVILTYDVSNVQSLEELEDRFLGLTDTAN---EDCLFAVVGNKLDLTEE 115 (220)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccc
Confidence 99999999986544444433333333221 23589999999999753
No 170
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.53 E-value=6.7e-13 Score=129.89 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
...+|+++|..|+|||||++++..........+..+.+.....+.+ ++ ..+.+|||+|.. .+.. ...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~---------~~~~l~~~ 74 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQG---------RFCTIFRS 74 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcH---------HHHHHHHH
Confidence 3578999999999999999999975432111111112222233444 44 456799999983 2322 233
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|++++...+....+.+.+.... ...|+|+|.||+|+..
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~----~~~piilVGNK~DL~~ 124 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA----PGVPKILVGNRLHLAF 124 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccchh
Confidence 4578999999999998755555544444443321 2359999999999853
No 171
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.53 E-value=4.3e-13 Score=128.34 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
.+|+|+|++|+|||||++++++.... .....++.......+.. ++ ..+.++||||+.+ |.. ....+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDE---------YSILPQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEE-CCEEEEEEEEECCChHh---------hHHHHHHHH
Confidence 47999999999999999999986532 22222222223344444 33 3468999999832 211 12345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHH-HHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v-~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..++.+++|+|.++....+....+ ..+++..+. ...|+|+|+||+|+..
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHT 120 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhh
Confidence 569999999999875433333333 233333322 2349999999999854
No 172
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.53 E-value=2.6e-13 Score=129.07 Aligned_cols=113 Identities=18% Similarity=0.117 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-C--CceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-S--GRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-~--g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
+|+++|.+|||||||+++++....... ...|.........+. + ...+.+|||+|.... ..+ ....+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~------~~~~~~ 71 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF--GGL------RDGYYI 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCCChhh--ccc------cHHHhc
Confidence 689999999999999999986542211 122322222222221 2 246789999998431 111 112356
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
.+|++++|+|++++........+...+....- ..|+++|+||+|+.
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~ 117 (166)
T cd00877 72 GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIK 117 (166)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhcc
Confidence 79999999999876444333333333333221 35999999999986
No 173
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53 E-value=2.9e-13 Score=130.52 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
+|+++|.+|+|||||+++|.+.... .....++.......+...++. .+.+|||||.. .+.. ....+.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~~~ 71 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE---------EYDRLRPLSYP 71 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch---------hHHHHHHHhCC
Confidence 6999999999999999999987632 222222222223334443233 56899999973 2221 222456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++...+.... .++..+... ....|+|+|+||+|+...
T Consensus 72 ~ad~ii~v~d~~~~~s~~~~~~--~~~~~~~~~-~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 72 DVDVLLICYAVDNPTSLDNVED--KWFPEVNHF-CPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHH--HHHHHHHHh-CCCCCEEEEEeChhhhhC
Confidence 7999999999987643333321 222222110 123599999999998643
No 174
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=9.1e-14 Score=147.23 Aligned_cols=241 Identities=17% Similarity=0.160 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH--cCCC--------------------cccccccceecCceeEEEecCCceEEEeecccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALS--DSDL--------------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGF 355 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~--g~~v--------------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~ 355 (597)
++.||+-||.||||||-..|+ |..+ .++.+.+.++..++-...+ ++..++|.||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTPGH 91 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTPGH 91 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCCCc
Confidence 489999999999999999886 2111 1233444555455555555 7889999999999
Q ss_pred cccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccccc-ccc
Q 007583 356 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEY 434 (597)
Q Consensus 356 i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~~-~~~ 434 (597)
.++. ..|.+-+..+|.+++|+|+..+ .+.++..+.++++.-++ |++-++||+|+...+... +++
T Consensus 92 -----eDFS---EDTYRtLtAvDsAvMVIDaAKG-iE~qT~KLfeVcrlR~i------PI~TFiNKlDR~~rdP~ELLdE 156 (528)
T COG4108 92 -----EDFS---EDTYRTLTAVDSAVMVIDAAKG-IEPQTLKLFEVCRLRDI------PIFTFINKLDREGRDPLELLDE 156 (528)
T ss_pred -----cccc---hhHHHHHHhhheeeEEEecccC-ccHHHHHHHHHHhhcCC------ceEEEeeccccccCChHHHHHH
Confidence 2222 3355666679999999999887 78888888888887776 999999999998776543 666
Q ss_pred ccccc----cccccccc---ccCCCCcccccccccCCCCCCCCCCC--CCcccchhhhhhc-ccchhhhhhhhc-----C
Q 007583 435 IDGDD----ISNFSRAE---DKDTTSEPVDVECIDNYGGDDADNND--GFVSEDLGESMNK-NHNDYSDGWLLS-----G 499 (597)
Q Consensus 435 i~~~~----~~~~~sa~---~~~gi~eL~~~~~~~~~~e~~~~~~~--~~~~~~~~e~~~~-~~~~l~e~~l~e-----~ 499 (597)
+...+ .+...+.+ ...|+-.+.+.....+... ....+. +.........++. ..+++.+.+.++ +
T Consensus 157 iE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~-~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~ 235 (528)
T COG4108 157 IEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESG-HTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQG 235 (528)
T ss_pred HHHHhCcceecccccccCCcccceeeeeccCEEEEeccC-CCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHh
Confidence 66555 22223332 2334444422222211111 100000 0000000000000 111111222111 1
Q ss_pred CCCCCchhhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhhcccccCCCCccccc
Q 007583 500 DEQDNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKTLDDKQKSPNVVERD 578 (597)
Q Consensus 500 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~~~~~~~~~~~~~~~ 578 (597)
.....+.+.|+.+ +..||+++||+++-||+.||+.+.+.+..=..+......|+..
T Consensus 236 a~~~Fd~~~fl~G-----------------------~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~ 291 (528)
T COG4108 236 AGNEFDLEAFLAG-----------------------ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPT 291 (528)
T ss_pred hccccCHHHHhcC-----------------------CccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCC
Confidence 1111113334433 6678999999999999999999999877644444433444443
No 175
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.52 E-value=3.6e-13 Score=127.31 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|++|+|||||++++++........+....+.....+.. ++ ..+.+|||+|.... ..........
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~--------~~~~~~~~~~ 72 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERY--------QTITKQYYRR 72 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhH--------HhhHHHHhcC
Confidence 6899999999999999999976643222111111222233444 33 35679999997321 1122334667
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++...+.. ..++..+........|+++|.||+|+..
T Consensus 73 ~~~~i~v~d~~~~~sf~~~---~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 73 AQGIFLVYDISSERSYQHI---MKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred CcEEEEEEECCCHHHHHHH---HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 9999999999876443333 3444433211122359999999999854
No 176
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.52 E-value=1.1e-13 Score=126.25 Aligned_cols=118 Identities=24% Similarity=0.186 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
++|+++|++|+|||||+|+|++........++.+.+.....+.. ++ ..+.++||||+....+.. .....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~--------~~~~~ 72 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIR--------RLYYR 72 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHH--------HHHHh
Confidence 58999999999999999999998744444455555544444444 55 567899999974331111 11223
Q ss_pred hcCEEEEEEeCCCC-C-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAP-N-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~-~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.++.++.++|.... . ...........+...... ..|+++|+||+|+...
T Consensus 73 ~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 73 AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDA 123 (161)
T ss_pred hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcc
Confidence 35555555554332 0 111111111222222111 3499999999998653
No 177
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.52 E-value=2.5e-13 Score=138.38 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=72.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccccccee-cCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL-DPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tl-d~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
+|+++|..|+|||||++++++..... .+. .|+ +.....+.+ ++ ..+.+|||+|... |.. ....+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~-pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~---------~~~~~~~~~ 69 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QYT-PTIEDFHRKLYSI-RGEVYQLDILDTSGNHP---------FPAMRRLSI 69 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CCC-CChhHhEEEEEEE-CCEEEEEEEEECCCChh---------hhHHHHHHh
Confidence 68999999999999999998755322 222 232 222233344 44 3567999999832 221 12235
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC------CccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV------SEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi------~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|+++....+....+.+.+..... ......|+|+|+||+|+..
T Consensus 70 ~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 70 LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 679999999999876444444444343333211 1123469999999999864
No 178
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.52 E-value=1.5e-13 Score=149.88 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=79.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEEEe------------------c--C-----CceE
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVL------------------P--S-----GRKV 347 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i~l------------------~--~-----g~~i 347 (597)
...+|+++|+.++|||||+.+|++... ..+...+.|++.......+ . + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 457899999999999999999987521 2222344555443221111 0 0 2578
Q ss_pred EEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 348 LLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 348 ~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.++||||+. . ....++..+..+|++++|+|++++....+.......+...++ +|+++|+||+|+.+.
T Consensus 88 ~liDtPG~~-----~---f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i-----~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 88 SFVDAPGHE-----T---LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGI-----KNIVIVQNKIDLVSK 154 (411)
T ss_pred EEEECCCHH-----H---HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCC-----CcEEEEEEeeccccc
Confidence 999999982 1 123456667789999999999976423344444456666664 368999999998753
No 179
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.52 E-value=4e-13 Score=127.93 Aligned_cols=113 Identities=27% Similarity=0.262 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH-HhHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH-ATLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l~~a 377 (597)
+|+++|++|||||||+++|++... .....|.......+.. ++..+.++||||... ++ .....+..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~---~~~~~t~g~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP---KKVAPTVGFTPTKLRL-DKYEVCIFDLGGGAN---------FRGIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC---ccccCcccceEEEEEE-CCEEEEEEECCCcHH---------HHHHHHHHHcCC
Confidence 479999999999999999998621 1223343444445555 677889999999732 22 123456789
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCC-CccCCCcEEEEEecCCCCCc
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGV-SEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi-~~~~~~P~IiVlNKiDl~~~ 427 (597)
|++++|+|+++... ...+..++..+-- ......|+++|+||+|+.+.
T Consensus 68 ~~ii~V~D~s~~~s---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 68 HGLVFVVDSSDDDR---VQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred CEEEEEEECCchhH---HHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 99999999987632 2223333433311 11124699999999998654
No 180
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.52 E-value=4e-13 Score=129.28 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
.+|+++|.+|+|||||++++...... ....++..+.....+.+ ++ ..+.+|||+|... +.. ....+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQED---------YDRLRPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccc---------hhhhhhhhc
Confidence 57999999999999999999976532 22222222222223344 44 3567999999832 211 22356
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++...+... .+...+.... ...|+|+|.||+|+.+.
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC----PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhC
Confidence 6799999999998864444332 2333343321 23599999999998653
No 181
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.52 E-value=3.8e-13 Score=128.50 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecC--ceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDP--RLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~--t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl 371 (597)
+..+|+++|.+|+|||||++++++.......+.+ |... ....+.+ ++ ..+.++||+|.... .....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~--------~~~~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKPRYAVNTVEV-YGQEKYLILREVGEDEVA--------ILLND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCcceEEEEEEE-CCeEEEEEEEecCCcccc--------cccch
Confidence 4689999999999999999999987643122222 2222 2233444 44 35678999997431 11122
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+..+|++++|+|++++. ..+.+..++..+... ...|+++|+||+|+.+
T Consensus 73 ~~~~~~d~~llv~d~~~~~---s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 73 AELAACDVACLVYDSSDPK---SFSYCAEVYKKYFML--GEIPCLFVAAKADLDE 122 (169)
T ss_pred hhhhcCCEEEEEEeCCCHH---HHHHHHHHHHHhccC--CCCeEEEEEEcccccc
Confidence 3457799999999998752 333444555544211 2359999999999854
No 182
>PRK12735 elongation factor Tu; Reviewed
Probab=99.51 E-value=1.6e-13 Score=148.85 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+++|+.|+|||||+++|++... ..+...+.|.+.....+.. ++..+.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA--- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH---
Confidence 457899999999999999999996210 1122345555544333333 56788999999982
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEE-EEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI-EVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~I-iVlNKiDl~~ 426 (597)
.....+...+..+|++++|+|+..+. ..+....+..+...++ |.| +|+||+|+.+
T Consensus 87 -----~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~~gi------~~iivvvNK~Dl~~ 142 (396)
T PRK12735 87 -----DYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGV------PYIVVFLNKCDMVD 142 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHHcCC------CeEEEEEEecCCcc
Confidence 22345566777899999999998763 4445455566777775 645 6899999874
No 183
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.51 E-value=2.7e-13 Score=127.98 Aligned_cols=118 Identities=20% Similarity=0.167 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|++|+|||||+++++.... .......+.......+.+ ++. .+.+|||||..... .......+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~ 71 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQAD-------TEQLERSIRW 71 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEE-CCEEEEEEEEECCCCcccc-------cchHHHHHHh
Confidence 389999999999999999986442 222222221222233334 444 46799999985311 1112344667
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++...+....+...+..... .....|+|+|+||+|+..
T Consensus 72 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 72 ADGFVLVYSITDRSSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLH 120 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHH
Confidence 9999999999887555555555555555432 012359999999999753
No 184
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.51 E-value=2.1e-13 Score=129.64 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
.+|+++|++|||||||++++.+.... ..+..+..+.....+.+ ++. .+.+|||+|... +.. ....+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEV-DGKQVELALWDTAGQED---------YDRLRPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEE-CCEEEEEEEEeCCCchh---------hhhcccccc
Confidence 47999999999999999999986532 22222222222334444 333 568999999832 111 11235
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|+++........ .+...+.... ...|+++|.||+|+...
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRND 120 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhcccC
Confidence 6799999999998753322322 2223333221 23599999999998653
No 185
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.51 E-value=5.5e-13 Score=129.33 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=70.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceec--CceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLD--PRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld--~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
+|+++|..|+|||||++++.+..... .+ ..|.. .....+.. ++ ..+.+|||+|... |.. ....
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~-~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~---------~~~~~~~~ 69 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE-DY-IQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE---------FINMLPLV 69 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCccceEEEEEEEEE-CCEEEEEEEEeCCCchh---------HHHhhHHH
Confidence 68999999999999999998765322 11 22322 22233444 44 3568999999832 222 2234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+....- ...| |+|.||+|+..
T Consensus 70 ~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~---~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 70 CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK---TAIP-ILVGTKYDLFA 118 (182)
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCE-EEEEEchhccc
Confidence 6779999999999886444443333333333221 1235 78999999864
No 186
>PLN03126 Elongation factor Tu; Provisional
Probab=99.50 E-value=2.3e-13 Score=150.56 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+++|+.++|||||+++|++... ..+...+.|++.....+.. ++..+.++||||+..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~-- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD-- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH--
Confidence 468999999999999999999996321 1223344555554444444 677899999999932
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~ 426 (597)
....+...+..+|++++|+|+..+ ...+....+..+..+++ | +|+|+||+|+++
T Consensus 157 ------f~~~~~~g~~~aD~ailVVda~~G-~~~qt~e~~~~~~~~gi------~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 ------YVKNMITGAAQMDGAILVVSGADG-PMPQTKEHILLAKQVGV------PNMVVFLNKQDQVD 211 (478)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCC------CeEEEEEecccccC
Confidence 234566777789999999999887 45556666677888876 5 788999999875
No 187
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.50 E-value=4.7e-13 Score=126.98 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
.+|+++|++|||||||++++.+..... ....++.+.....+.+.+ ...+.+|||||... |.. ....+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~ 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE-SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ---------FTAMRELYIK 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcchheEEEEEEECCEEEEEEEEeCCCccc---------chhhhHHHHh
Confidence 469999999999999999999765321 111111112222333321 24668999999843 211 122355
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.++.+++|+|.+++...+....+...+.... .....|+++|+||+|+..
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~--~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIK--DSDNVPMVLVGNKADLED 120 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCCEEEEEEChhccc
Confidence 6899999999987644333333334333321 122359999999999854
No 188
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.50 E-value=2.4e-13 Score=128.17 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
+|+++|++|||||||+++|++....... ..+..+........+ ....+.+|||||+.... .+ ....+..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~------~~--~~~~~~~~ 72 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEY-VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD------RL--RPLSYPNT 72 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeeEEEEEECCEEEEEEEEeCCCccccc------cc--chhhcCCC
Confidence 6899999999999999999987642221 111111122222221 13357899999985321 11 11223679
Q ss_pred CEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 378 DLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
|++++|+|++++...... ..+...+.... ...|+++|+||+|+.....
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 73 DVFLICFSVDSPSSFENVKTKWIPEIRHYC----PNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEccHHhhhchh
Confidence 999999999875322221 22222333222 1359999999999886543
No 189
>PRK00049 elongation factor Tu; Reviewed
Probab=99.49 E-value=1.7e-13 Score=148.64 Aligned_cols=115 Identities=20% Similarity=0.187 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+++|+.++|||||+++|++... ..+...+.|.+.....+.. ++..+.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA--- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH---
Confidence 457899999999999999999997310 1122455666655444333 56789999999983
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEE-EEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI-EVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~I-iVlNKiDl~~ 426 (597)
.....+...+..+|++++|+|+..+ ...+...++..+...++ |.+ +|+||+|+.+
T Consensus 87 -----~f~~~~~~~~~~aD~~llVVDa~~g-~~~qt~~~~~~~~~~g~------p~iiVvvNK~D~~~ 142 (396)
T PRK00049 87 -----DYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGV------PYIVVFLNKCDMVD 142 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCC-CchHHHHHHHHHHHcCC------CEEEEEEeecCCcc
Confidence 2234455667789999999999876 44556666677877775 765 6899999875
No 190
>PLN03108 Rab family protein; Provisional
Probab=99.49 E-value=1.2e-12 Score=129.65 Aligned_cols=118 Identities=21% Similarity=0.162 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+|+|++|+|||||+++|++........+..+.+.....+.+ ++. .+.+|||+|.... ...+...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~--------~~~~~~~~ 76 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESF--------RSITRSYY 76 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHH--------HHHHHHHh
Confidence 478999999999999999999987543332222222222334444 343 4679999998321 11234456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+.... ....|+++|+||+|+..
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~---~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHA---NANMTIMLIGNKCDLAH 125 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc---CCCCcEEEEEECccCcc
Confidence 67999999999987644333333322222221 12359999999999854
No 191
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.49 E-value=4.3e-13 Score=127.31 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=70.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
|+++|.+|+|||||++++.+....... ..+..+.....+.+ ++. .+.+|||||..... ......+..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~ 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY-VPTVFENYSADVEV-DGKPVELGLWDTAGQEDYD--------RLRPLSYPDT 70 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC-CCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc--------hhchhhcCCC
Confidence 589999999999999999987643221 12222222223334 343 46899999983210 1112235679
Q ss_pred CEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|++++...+... .+...+.... ...|+|+|.||+|+..
T Consensus 71 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~ 116 (174)
T smart00174 71 DVFLICFSVDSPASFENVKEKWYPEVKHFC----PNTPIILVGTKLDLRE 116 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEecChhhhh
Confidence 9999999998764333321 2333333321 2359999999999865
No 192
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.49 E-value=3.9e-13 Score=145.79 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC----------------CcccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD----------------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~----------------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+++|+.++|||||+++|++.. ...+...+.|.+.....+.. ++..+.++||||+..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~-- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD-- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH--
Confidence 45789999999999999999998431 01222355666654433332 566789999999932
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCCc
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDE 427 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~~ 427 (597)
....+...+..+|++++|+|+..+. ..+....+..+...++ | +|+|+||+|+.+.
T Consensus 88 ------f~~~~~~~~~~~D~~ilVvda~~g~-~~qt~e~l~~~~~~gi------~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 ------YVKNMITGAAQMDGAILVVSATDGP-MPQTREHILLARQVGV------PYIVVFLNKCDMVDD 143 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCC------CEEEEEEEecccCCH
Confidence 2244566677899999999998863 4455555666777775 5 4578999998753
No 193
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.49 E-value=3.5e-13 Score=131.96 Aligned_cols=125 Identities=22% Similarity=0.254 Sum_probs=83.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccc--cccceecCceeEEEecCCceEEEeecccccccch--hhHHHHH-HHhHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDA--RLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP--LQLVDAF-HATLEE 373 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~--~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp--~~lve~f-~sTl~~ 373 (597)
+|+|+|.+|+|||||+|+|+|....... ....|.........+ ++..+.++||||+..... ....... ......
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 6999999999999999999998754333 345666666666666 788999999999975421 1222222 112222
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcEEEEEecCCCCCcc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
...+|++++|+|+.+ ...... .+.+.+.+ +|- ...+++|+|+||+|.+.+.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~-~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEE-QAVETLQELFGE--KVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHH-HHHHHHHHHhCh--HhHhcEEEEEECccccCCC
Confidence 356899999999887 344443 34444444 452 2234899999999987543
No 194
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.48 E-value=6.9e-13 Score=150.61 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcc---------------cccccceecCceeEEEec--CC--ceEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS---------------DARLFATLDPRLKSVVLP--SG--RKVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~---------------~~~~f~Tld~t~~~i~l~--~g--~~i~LiDTpG~i 356 (597)
.+++++|+|+.|+|||||+++|+.....+ +...+.|.......+.+. ++ ..+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 46899999999999999999998643111 112244444443344442 23 467899999994
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
. +. ......+..+|++++|+|++++........+..++ ..+ .|+|+|+||+|+..
T Consensus 82 d-----F~---~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~~~------ipiIiViNKiDl~~ 136 (595)
T TIGR01393 82 D-----FS---YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-END------LEIIPVINKIDLPS 136 (595)
T ss_pred H-----HH---HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-HcC------CCEEEEEECcCCCc
Confidence 3 11 22344567799999999999874444333333332 333 38999999999854
No 195
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.48 E-value=1.6e-13 Score=151.94 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=80.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccc---------------------------------ccccceecCceeEEEec
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSD---------------------------------ARLFATLDPRLKSVVLP 342 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~---------------------------------~~~f~Tld~t~~~i~l~ 342 (597)
...+|+++|+.|+|||||+++|+...-.+. ...+.|++.....+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~- 104 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST- 104 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc-
Confidence 458999999999999999999985432111 1123344544444444
Q ss_pred CCceEEEeecccccccchhhHHHHH-HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEec
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 421 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNK 421 (597)
++..+.++||||+. .| ..+...+..+|++++|+|+..+. ..+......++..+++ +|+|+|+||
T Consensus 105 ~~~~i~~iDTPGh~---------~f~~~~~~~l~~aD~allVVDa~~G~-~~qt~~~~~l~~~lg~-----~~iIvvvNK 169 (474)
T PRK05124 105 EKRKFIIADTPGHE---------QYTRNMATGASTCDLAILLIDARKGV-LDQTRRHSFIATLLGI-----KHLVVAVNK 169 (474)
T ss_pred CCcEEEEEECCCcH---------HHHHHHHHHHhhCCEEEEEEECCCCc-cccchHHHHHHHHhCC-----CceEEEEEe
Confidence 56789999999972 23 34455578899999999998763 3344444556666665 378999999
Q ss_pred CCCCC
Q 007583 422 IDYHD 426 (597)
Q Consensus 422 iDl~~ 426 (597)
+|+++
T Consensus 170 iD~~~ 174 (474)
T PRK05124 170 MDLVD 174 (474)
T ss_pred ecccc
Confidence 99874
No 196
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.48 E-value=3.8e-13 Score=147.98 Aligned_cols=116 Identities=22% Similarity=0.196 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-------------------------------cccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|+.++|||||+.+|+...- ..+...+.|.+.....+.+ ++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence 457899999999999999999974210 1122345566665555555 67
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCCh------HHHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL------EEHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~------~~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.++||||+. .....+...+..+|++++|+|+..+.. ..+....+.++..+|+. ++|+|
T Consensus 85 ~~i~lIDtPGh~--------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~-----~iiv~ 151 (446)
T PTZ00141 85 YYFTIIDAPGHR--------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK-----QMIVC 151 (446)
T ss_pred eEEEEEECCChH--------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC-----eEEEE
Confidence 889999999983 223455667788999999999987643 35667777888888872 47899
Q ss_pred EecCCCC
Q 007583 419 WNKIDYH 425 (597)
Q Consensus 419 lNKiDl~ 425 (597)
+||+|+.
T Consensus 152 vNKmD~~ 158 (446)
T PTZ00141 152 INKMDDK 158 (446)
T ss_pred EEccccc
Confidence 9999954
No 197
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.48 E-value=9.2e-13 Score=125.22 Aligned_cols=113 Identities=18% Similarity=0.108 Sum_probs=71.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCE
Q 007583 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 379 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDl 379 (597)
|+++|.+|+|||||++++.+..... .. ..|.......+.. .+..+.+|||+|.... .......+..+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~-~~-~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ad~ 70 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE-SV-VPTTGFNSVAIPT-QDAIMELLEIGGSQNL--------RKYWKRYLSGSQG 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-cc-cccCCcceEEEee-CCeEEEEEECCCCcch--------hHHHHHHHhhCCE
Confidence 7899999999999999999865322 11 1222222223333 4567899999998321 0112345778999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 380 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 380 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+++|+|++++.. ...+..++..+... ....|+++|.||+|+...
T Consensus 71 ii~V~D~t~~~s---~~~~~~~l~~~~~~-~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 71 LIFVVDSADSER---LPLARQELHQLLQH-PPDLPLVVLANKQDLPAA 114 (164)
T ss_pred EEEEEECCCHHH---HHHHHHHHHHHHhC-CCCCcEEEEEeCcCCcCC
Confidence 999999987532 22233333333211 134699999999998543
No 198
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.48 E-value=2.6e-13 Score=147.80 Aligned_cols=113 Identities=22% Similarity=0.265 Sum_probs=80.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCc---------------------------------ccccccceecCceeEEEecCCc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLF---------------------------------SDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~---------------------------------~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
+|+++|+.|||||||+++|+...-. .+...+.|.+.....+.+ ++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DKR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CCe
Confidence 6899999999999999999743311 111233455555555555 667
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 346 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 346 ~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
.+.++||||+.. ....+...+..+|++++|+|+..+ ...+....+.++..+++ +++|+|+||+|+.
T Consensus 81 ~~~liDtPGh~~--------f~~~~~~~~~~aD~allVVda~~G-~~~qt~~~~~~~~~~~~-----~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQ--------YTRNMATGASTADLAVLLVDARKG-VLEQTRRHSYIASLLGI-----RHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHH--------HHHHHHHHHhhCCEEEEEEECCCC-CccccHHHHHHHHHcCC-----CcEEEEEEecccc
Confidence 899999999821 123455667889999999999877 34455555667777775 3689999999987
Q ss_pred C
Q 007583 426 D 426 (597)
Q Consensus 426 ~ 426 (597)
+
T Consensus 147 ~ 147 (406)
T TIGR02034 147 D 147 (406)
T ss_pred c
Confidence 5
No 199
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.48 E-value=6.6e-13 Score=129.12 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
+|+++|.+|+|||||++++.+....... ..+........+.. ++ ..+.+|||+|... +.. ....+.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~-~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~---------~~~l~~~~~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVY-EPTVFENYVHDIFV-DGLHIELSLWDTAGQEE---------FDRLRSLSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcc-CCcceeeeEEEEEE-CCEEEEEEEEECCCChh---------cccccccccc
Confidence 6899999999999999999986532221 11111111223333 33 4678999999832 211 122456
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 376 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.+|++++|+|++++....... .+...+.... ...|+|+|.||+|+....
T Consensus 71 ~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~----~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 71 DTDVIMLCFSVDSPDSLENVESKWLGEIREHC----PGVKLVLVALKCDLREAR 120 (189)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccCh
Confidence 799999999998874443332 2333333221 235999999999996543
No 200
>PLN03127 Elongation factor Tu; Provisional
Probab=99.47 E-value=7.1e-13 Score=145.81 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC------C----------CcccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS------D----------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~------~----------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+++|+.++|||||+++|++. . ...+...+.|.+.....+.. ++.++.++||||+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD-- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc--
Confidence 4589999999999999999999843 1 01223356676665444443 567899999999932
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~ 426 (597)
....+...+..+|++++|+|+..+ ...+...+...+..+++ | +|+|+||+|+++
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g-~~~qt~e~l~~~~~~gi------p~iIvviNKiDlv~ 191 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQVGV------PSLVVFLNKVDVVD 191 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCC-CchhHHHHHHHHHHcCC------CeEEEEEEeeccCC
Confidence 234445556679999999999876 34556666677888886 6 578999999875
No 201
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.47 E-value=3.7e-13 Score=129.34 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc-eeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR-LKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLEE 373 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t-~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~~ 373 (597)
.+|+++|.+|+|||||+.++...... ..+. .|.... ...+.+ ++ ..+.+|||+|... +. .....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~-~~~~-~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~~~~~~~ 69 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYI-PTVFDNYSANVMV-DGKPVNLGLWDTAGQED---------YDRLRPLS 69 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CcCC-CcceeeeEEEEEE-CCEEEEEEEEECCCchh---------hhhhhhhh
Confidence 47999999999999999999975432 2221 122222 122333 44 3567999999822 21 12234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++....... .+...+.... ...|+|+|.||+|+.+
T Consensus 70 ~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~----~~~piilvgnK~Dl~~ 119 (174)
T cd01871 70 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRD 119 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhcc
Confidence 66799999999999864444432 2333343321 2359999999999864
No 202
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.47 E-value=1.6e-12 Score=130.12 Aligned_cols=116 Identities=20% Similarity=0.133 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccccccee--cCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL--DPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tl--d~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
+|+++|.+|+|||||++++++........ ..|. +.....+.+. ....+.+|||+|... . .. ...+.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----~----~~--~~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAY-DASGDDDTYERTVSVDGEESTLVVIDHWEQEM----W----TE--DSCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCc-CCCccccceEEEEEECCEEEEEEEEeCCCcch----H----HH--hHHhh
Confidence 68999999999999999997654321111 1121 2223334442 224578999999941 1 11 11233
Q ss_pred -hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 -EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 -~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++........+...+..... ....|+|+|+||+|+...
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ--LEDRPIILVGNKSDLARS 121 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhcccc
Confidence 79999999999986444444444444444321 123599999999998643
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.47 E-value=2.1e-13 Score=149.29 Aligned_cols=117 Identities=21% Similarity=0.180 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-------------------------------ccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-------------------------------SDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-------------------------------~~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|+.++|||||+++|+...-. .+...+.|++.....+.+ ++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~ 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DK 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CC
Confidence 5689999999999999999999852210 112345566666655555 67
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChH--HHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE--EHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~--~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
..+.+|||||+.. ....+...+..+|++++|+|++++.+. .+......++..++. .|+|+|+||+
T Consensus 85 ~~i~iiDtpGh~~--------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~-----~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHRD--------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGI-----NQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHHH--------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCC-----CeEEEEEECh
Confidence 7899999999831 123445567789999999999886322 122222234445553 3789999999
Q ss_pred CCCC
Q 007583 423 DYHD 426 (597)
Q Consensus 423 Dl~~ 426 (597)
|+.+
T Consensus 152 Dl~~ 155 (426)
T TIGR00483 152 DSVN 155 (426)
T ss_pred hccC
Confidence 9964
No 204
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.46 E-value=4.4e-13 Score=127.29 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|++|+|||||++++.+...... ...+..+.....+.+ ++. .+.+|||+|..... . ..-..+..
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--~------~~~~~~~~ 71 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEE-YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD--R------LRPLSYPM 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEE-CCEEEEEEEEeCCCccccc--c------cccccCCC
Confidence 689999999999999999998763222 112222222223444 343 35689999984310 0 11123567
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 377 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+|++++|+|.+++...+.. ..+...+... ....|+++|+||+|+.+.
T Consensus 72 ~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~----~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 72 TDVFLICFSVVNPASFQNVKEEWVPELKEY----APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEeEchhhhcC
Confidence 8999999999876443333 2334444433 123599999999998654
No 205
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=1.7e-12 Score=129.79 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=72.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCcee--EEEec-CCceEEEeecccccccchhhHHHHHHH-hH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLK--SVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHA-TL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~--~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl 371 (597)
...+|+++|..|+|||||+++++........ ..|+..... .+... ....+.+|||+|... |.. ..
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~--~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~ 80 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRD 80 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCcc--CCccceeEEEEEEEECCeEEEEEEEECCCchh---------hhhhhH
Confidence 4579999999999999999998765422111 122222222 22221 224778999999832 222 12
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
..+..+|++++|+|.+++........+...+.... ...|+++|+||+|+.
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~ 130 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK 130 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCcEEEEEEchhhh
Confidence 34567999999999998644443333333333321 235999999999984
No 206
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.46 E-value=1.3e-12 Score=148.50 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc---------------ccccccceecCceeEEEec--C--CceEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---------------SDARLFATLDPRLKSVVLP--S--GRKVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~---------------~~~~~f~Tld~t~~~i~l~--~--g~~i~LiDTpG~i 356 (597)
.+++++|+|+.++|||||+++|+...-. .+...+.|.......+.+. + +..+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 5789999999999999999999853211 1122345555444444442 2 3568899999994
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+ +. ......+..+|++++|+|++++.. .+....+..+...++ |+|+|+||+|+..
T Consensus 86 d-----F~---~~v~~sl~~aD~aILVVDas~gv~-~qt~~~~~~~~~~~l------piIvViNKiDl~~ 140 (600)
T PRK05433 86 D-----FS---YEVSRSLAACEGALLVVDASQGVE-AQTLANVYLALENDL------EIIPVLNKIDLPA 140 (600)
T ss_pred H-----HH---HHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHHHCCC------CEEEEEECCCCCc
Confidence 3 11 123345667999999999998643 333333333334443 8999999999854
No 207
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.45 E-value=4.9e-13 Score=153.27 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccc---------------------------------ccccceecCceeEEEec
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSD---------------------------------ARLFATLDPRLKSVVLP 342 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~---------------------------------~~~f~Tld~t~~~i~l~ 342 (597)
...+|+++|++|+|||||+++|+.....+. ...+.|.+.....+.+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~- 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT- 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-
Confidence 347899999999999999999996542211 1122344444444444
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
++..+.++||||+.. + ...+...+..+|++++|+|+..+. ..+......++..++. +|+|+|+||+
T Consensus 102 ~~~~~~liDtPG~~~-----f---~~~~~~~~~~aD~~llVvda~~g~-~~~t~e~~~~~~~~~~-----~~iivvvNK~ 167 (632)
T PRK05506 102 PKRKFIVADTPGHEQ-----Y---TRNMVTGASTADLAIILVDARKGV-LTQTRRHSFIASLLGI-----RHVVLAVNKM 167 (632)
T ss_pred CCceEEEEECCChHH-----H---HHHHHHHHHhCCEEEEEEECCCCc-cccCHHHHHHHHHhCC-----CeEEEEEEec
Confidence 667899999999831 1 233445677899999999998763 3444444556666665 3788999999
Q ss_pred CCCC
Q 007583 423 DYHD 426 (597)
Q Consensus 423 Dl~~ 426 (597)
|+++
T Consensus 168 D~~~ 171 (632)
T PRK05506 168 DLVD 171 (632)
T ss_pred cccc
Confidence 9875
No 208
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.45 E-value=2.9e-12 Score=125.04 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecC-ceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDP-RLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~-t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
.+|+++|..|+|||||++++....... .. ..|... ....+.+ ++ ..+.+|||+|.. .|.. .-..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~-~~-~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e---------~~~~l~~~~ 71 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPK-EY-IPTVFDNYSAQTAV-DGRTVSLNLWDTAGQE---------EYDRLRTLS 71 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCc-CC-CCceEeeeEEEEEE-CCEEEEEEEEECCCch---------hhhhhhhhh
Confidence 689999999999999999999765321 11 112211 1112333 34 356799999993 3332 2234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++.+.+... .+...+.... ...|+++|.||+|+.+
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~ 121 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC----PNVPILLVGTKKDLRN 121 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEeChhhhc
Confidence 56899999999999875444433 2333333221 2359999999999854
No 209
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=4.9e-12 Score=127.78 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=73.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
...|+++|..|+|||||++++.+..... .+..+........+.+ ++ ..+.+|||+|. +.|.. ....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~-~y~pTi~~~~~~~i~~-~~~~v~l~iwDTaG~---------e~~~~~~~~~ 81 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTAGLET-EEQRVELSLWDTSGS---------PYYDNVRPLC 81 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCC-CcCCceeeeeEEEEEE-CCEEEEEEEEeCCCc---------hhhHHHHHHH
Confidence 3689999999999999999999765322 2211111111222333 33 35689999998 23332 3345
Q ss_pred HHhcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++..... ...+...+.... ...|+|+|.||+|+..
T Consensus 82 ~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 131 (232)
T cd04174 82 YSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC----PSTRILLIGCKTDLRT 131 (232)
T ss_pred cCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 678999999999998754443 233444444322 1248999999999853
No 210
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.43 E-value=2.7e-12 Score=139.03 Aligned_cols=87 Identities=31% Similarity=0.448 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec--------------------CC---ceEEEeeccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--------------------SG---RKVLLSDTVG 354 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~--------------------~g---~~i~LiDTpG 354 (597)
..|+|||.+|+|||||||+|++....+.+++|+|++|+.+....+ ++ ..+.++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 479999999999999999999988878889999999998875531 12 3467999999
Q ss_pred ccccchh--hHHHHHHHhHHHHHhcCEEEEEEeCC
Q 007583 355 FISDLPL--QLVDAFHATLEEVVEADLLVHVLDCT 387 (597)
Q Consensus 355 ~i~~lp~--~lve~f~sTl~~l~~aDliL~VvDas 387 (597)
++..... .+. ...+..++.+|+++||+|++
T Consensus 82 l~~ga~~g~glg---~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLG---NQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHH---HHHHHHHHHCCEEEEEEeCC
Confidence 9754221 232 24477889999999999997
No 211
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.42 E-value=2.9e-12 Score=122.25 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=71.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
+|+++|.+|+|||||++++.+... ...+..++.+.....+.+ ++ ..+.+|||||+.. +.. .-..+.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDE---------FDKLRPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEE-CCEEEEEEEEECCCChh---------hccccccccC
Confidence 689999999999999999987542 222222222222233444 34 3567899999832 211 122456
Q ss_pred hcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++...+.. ..+...+.... ...|+++|+||+|+...
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN----PKAPIILVGTQADLRTD 119 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhhccC
Confidence 79999999999886433332 23333333321 13599999999998643
No 212
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=4.2e-12 Score=122.82 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
.+|+++|.+|+|||||++++.+.... .....+........+.+ ++ ..+.+|||+|.. .|.. ....+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~---------~~~~~~~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEI-DEQRIELSLWDTSGSP---------YYDNVRPLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEE-CCEEEEEEEEECCCch---------hhhhcchhhc
Confidence 47999999999999999999986532 22211111111223333 33 356799999983 2322 22346
Q ss_pred HhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++.+.+.. ..+...+.... ...|+|+|.||+|+.+
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~ 119 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRT 119 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhc
Confidence 789999999999987554442 44444444432 1359999999999854
No 213
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=4.1e-12 Score=122.54 Aligned_cols=121 Identities=22% Similarity=0.274 Sum_probs=91.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
...+|.|+|.+|+|||.|+.++.+.............|...+.+.+ +|. .+.+|||+|+ +.|++ +..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQ---------ERFrtit~s 77 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQ---------ERFRTITSS 77 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeecccc---------HHHhhhhHh
Confidence 4689999999999999999999987644333333345777777777 555 4689999999 66765 677
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.++.|+.+++|+|++.. +....+..|+.++.-......|.++|.||+|+.+...
T Consensus 78 yYR~ahGii~vyDiT~~---~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 78 YYRGAHGIIFVYDITKQ---ESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRV 131 (205)
T ss_pred hccCCCeEEEEEEcccH---HHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhee
Confidence 88999999999999975 4445555666666544334468999999999876543
No 214
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.41 E-value=7e-12 Score=121.86 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
..+|+++|..|+|||||++++...... .....+........+.+ ++ ..+.+|||+|. +.|.. ....
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~---------e~~~~~~~~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEI-DTQRIELSLWDTSGS---------PYYDNVRPLS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEE-CCEEEEEEEEECCCc---------hhhHhhhhhh
Confidence 368999999999999999999976532 22211111111223333 33 35689999998 23322 2335
Q ss_pred HHhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++.+.+.. ..+...+.... ...|+|+|.||+|+..
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 123 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 123 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhc
Confidence 6789999999999987544443 34444444432 1359999999999853
No 215
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.40 E-value=2.9e-12 Score=151.59 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC-----------------ceEEEeecccccc
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-----------------RKVLLSDTVGFIS 357 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g-----------------~~i~LiDTpG~i~ 357 (597)
++++--+++++ |||||.+|.+.++.....-+.|.+.....+.+..+ ..+.++||||+
T Consensus 463 ~~~~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh-- 536 (1049)
T PRK14845 463 HNFIANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH-- 536 (1049)
T ss_pred Ccceeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc--
Confidence 45555566655 99999999999886655555555544433433211 13789999998
Q ss_pred cchhhHHHHHHH-hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 358 DLPLQLVDAFHA-TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 358 ~lp~~lve~f~s-Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+.|.. .......+|++++|+|++++. ..+.......+...++ |+|+|+||+|+...+
T Consensus 537 -------e~F~~lr~~g~~~aDivlLVVDa~~Gi-~~qT~e~I~~lk~~~i------PiIVViNKiDL~~~~ 594 (1049)
T PRK14845 537 -------EAFTSLRKRGGSLADLAVLVVDINEGF-KPQTIEAINILRQYKT------PFVVAANKIDLIPGW 594 (1049)
T ss_pred -------HHHHHHHHhhcccCCEEEEEEECcccC-CHhHHHHHHHHHHcCC------CEEEEEECCCCcccc
Confidence 33422 233456699999999998763 3444444566666553 899999999997543
No 216
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.39 E-value=3.2e-12 Score=140.69 Aligned_cols=116 Identities=23% Similarity=0.202 Sum_probs=83.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-------------------------------cccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|+.++|||||+-+|+...- ..+...+.|++.....+.. ++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~ 84 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TK 84 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CC
Confidence 457899999999999999999873210 1122344555555544444 56
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChH------HHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE------EHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~------~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.++||||+. .....+...+..+|.+++|+|+..+..+ .+....+.++..+++ +++|+|
T Consensus 85 ~~i~liDtPGh~--------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi-----~~iIV~ 151 (447)
T PLN00043 85 YYCTVIDAPGHR--------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV-----KQMICC 151 (447)
T ss_pred EEEEEEECCCHH--------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCC-----CcEEEE
Confidence 789999999992 2335566778889999999999875332 455666677778887 257889
Q ss_pred EecCCCC
Q 007583 419 WNKIDYH 425 (597)
Q Consensus 419 lNKiDl~ 425 (597)
+||+|+.
T Consensus 152 vNKmD~~ 158 (447)
T PLN00043 152 CNKMDAT 158 (447)
T ss_pred EEcccCC
Confidence 9999986
No 217
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2e-12 Score=124.23 Aligned_cols=117 Identities=20% Similarity=0.155 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcc--cccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHH-hHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFS--DARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~--~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
-.+|+|+|..|+|||||+-++....... +...++. .-+..+.+. ....+.+|||+|+.+ |++ .-.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaa--F~tktv~~~~~~ikfeIWDTAGQER---------y~slapM 73 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAA--FLTKTVTVDDNTIKFEIWDTAGQER---------YHSLAPM 73 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccE--EEEEEEEeCCcEEEEEEEEcCCccc---------ccccccc
Confidence 3789999999999999999998765322 1111111 111223331 124677999999954 322 234
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+++.|+.+|+|+|+++..+. ..+..|++++.-....+.-+.+|.||+|+...
T Consensus 74 YyRgA~AAivvYDit~~~SF---~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 74 YYRGANAAIVVYDITDEESF---EKAKNWVKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred eecCCcEEEEEEecccHHHH---HHHHHHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence 67889999999999986444 44445555554322222345669999999773
No 218
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.39 E-value=8.6e-12 Score=111.98 Aligned_cols=116 Identities=24% Similarity=0.189 Sum_probs=70.3
Q ss_pred EEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEE
Q 007583 302 VVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLL 380 (597)
Q Consensus 302 LVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDli 380 (597)
++|++|+|||||+|+|.+.............+......... .+..+.++||||+... ..........+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~~~~~ 72 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF--------RSLRRLYYRGADGI 72 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHH--------HhHHHHHhcCCCEE
Confidence 58999999999999999976422222111122222222221 2567899999998432 11224456679999
Q ss_pred EEEEeCCCCChHHHHHHH-HHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 381 VHVLDCTAPNLEEHRTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 381 L~VvDas~~~~~~~~~~v-~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
++|+|++.+........+ ...+.... ....|+++|+||+|+....
T Consensus 73 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 73 ILVYDVTDRESFENVKEWLLLILINKE---GENIPIILVGNKIDLPEER 118 (157)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhc---cCCCcEEEEEecccccccc
Confidence 999999986433333322 11111111 2235999999999986543
No 219
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.39 E-value=3.1e-12 Score=124.11 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+|+|++|+|||||+++|....... ....+..+.....+.+ ++. .+.++||+|...... + ....+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~------~--~~~~~~ 71 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER------L--RPLSYS 71 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccc------c--chhhcC
Confidence 379999999999999999998544221 1111111222223333 333 467899999843210 0 112346
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|+++........ .+...+.... ...|+|+|.||+|+..
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~----~~~piilvgnK~Dl~~ 119 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYC----PNVPVILVGLKKDLRQ 119 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhhh
Confidence 789999999997754333322 2333333321 1359999999999854
No 220
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.39 E-value=9e-12 Score=118.05 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|.+|+|||||++++........ .. .+.......+.+ +|. .+.+|||+|... . .....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~-~~~~~~~~~i~~-~~~~~~l~i~D~~g~~~---------~----~~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ES-PEGGRFKKEVLV-DGQSHLLLIRDEGGAPD---------A----QFASW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CC-CCccceEEEEEE-CCEEEEEEEEECCCCCc---------h----hHHhc
Confidence 689999999999999998776442211 11 111222234455 553 467899999932 0 12356
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+|++++|+|.++..+.+....++..+.... .....|+++|.||+|+.
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~--~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYR--NISEIPLILVGTQDAIS 112 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEeeHHHhh
Confidence 899999999998755555444444443332 11235999999999974
No 221
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.39 E-value=7e-12 Score=121.28 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccccccccee-cCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL-DPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tl-d~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
.+|+++|.+|+|||||+.++...... .... .|+ +.....+.. ++ ..+.+|||+|..+ |.. ....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~~~~-~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~---------~~~~~~~~ 69 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYI-PTVFDNFSANVSV-DGNTVNLGLWDTAGQED---------YNRLRPLS 69 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCC-CcceeeeEEEEEE-CCEEEEEEEEECCCCcc---------ccccchhh
Confidence 57999999999999999999976532 2221 222 222223333 44 3567999999832 321 2335
Q ss_pred HHhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++.+|++++|+|.+++.+.+.. ..+...+.... ...|+|+|.||+|+.+
T Consensus 70 ~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~ 119 (176)
T cd04133 70 YRGADVFVLAFSLISRASYENVLKKWVPELRHYA----PNVPIVLVGTKLDLRD 119 (176)
T ss_pred cCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhcc
Confidence 6789999999999987554443 33444443332 1359999999999954
No 222
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.37 E-value=2e-12 Score=120.59 Aligned_cols=100 Identities=24% Similarity=0.315 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
.+|.|+|++|||||||+++|.|...... .+..+.+.+ .++||||-.-..|+. +++.+.....|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~---------KTq~i~~~~----~~IDTPGEyiE~~~~----y~aLi~ta~da 64 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK---------KTQAIEYYD----NTIDTPGEYIENPRF----YHALIVTAQDA 64 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC---------ccceeEecc----cEEECChhheeCHHH----HHHHHHHHhhC
Confidence 3799999999999999999999763111 111233312 359999964333332 23334445579
Q ss_pred CEEEEEEeCCCCCh--HHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNL--EEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~--~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|.|++++.. ... +.....+|+|-|+||+|+..
T Consensus 65 d~V~ll~dat~~~~~~pP~------------fa~~f~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPG------------FASMFNKPVIGVITKIDLPS 103 (143)
T ss_pred CEEEEEecCCCCCccCCch------------hhcccCCCEEEEEECccCcc
Confidence 99999999987621 111 11112359999999999974
No 223
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.37 E-value=1.1e-11 Score=124.44 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
.+|+|+|.+|+|||||++++++.... ..+.++........+.+ ++. .+.+|||+|.. .|.. .-..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e---------~~~~l~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEI-DKRRIELNMWDTSGSS---------YYDNVRPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEE-CCEEEEEEEEeCCCcH---------HHHHHhHHhc
Confidence 47999999999999999999986532 22222222222223333 443 46789999982 2322 22346
Q ss_pred HhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++...+.. ..+...+.... ...|+|+|.||+|+...
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~----~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFC----PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEECcccccc
Confidence 789999999999987444333 22322232221 23599999999998653
No 224
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.37 E-value=8.6e-12 Score=122.51 Aligned_cols=118 Identities=20% Similarity=0.219 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccccccc-ceecCc--eeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLF-ATLDPR--LKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f-~Tld~t--~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..|+++|.+|+|||||+|+|+|.......... .....+ ...+..+....+.++||||+..... . .+.+.. ...+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~-~-~~~~l~-~~~~ 78 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAF-P-PDDYLE-EMKF 78 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccC-C-HHHHHH-HhCc
Confidence 57999999999999999999996532211110 001111 1122222345789999999853211 1 112211 1124
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|.|. + .......+.+.+...+ +|+++|+||+|+..+
T Consensus 79 ~~~d~~l~v~~~--~-~~~~d~~~~~~l~~~~------~~~ilV~nK~D~~~~ 122 (197)
T cd04104 79 SEYDFFIIISST--R-FSSNDVKLAKAIQCMG------KKFYFVRTKVDRDLS 122 (197)
T ss_pred cCcCEEEEEeCC--C-CCHHHHHHHHHHHHhC------CCEEEEEecccchhh
Confidence 568888887543 2 3344455566777665 389999999998654
No 225
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.36 E-value=1e-11 Score=119.64 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=78.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+++|..|||||||++.|....... ...|.......+.+ .+..+.++|..|.....+ .+. ..+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~~~-----~w~---~y~~ 80 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKY-KGYSLTIWDLGGQESFRP-----LWK---SYFQ 80 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEE-TTEEEEEEEESSSGGGGG-----GGG---GGHT
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeee-CcEEEEEEeccccccccc-----cce---eecc
Confidence 34799999999999999999999754221 22344444556666 788999999999833211 111 1234
Q ss_pred hcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|+++.. ..+....+.+++... .....|+++++||+|+.++
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~---~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDP---ELKDIPILILANKQDLPDA 130 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSG---GGTTSEEEEEEESTTSTTS
T ss_pred ccceeEEEEecccceeecccccchhhhcchh---hcccceEEEEeccccccCc
Confidence 689999999998753 233334444444332 2234699999999998654
No 226
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.36 E-value=1.8e-11 Score=120.99 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=68.7
Q ss_pred EcCCCCCHHHHHHHHHcCCCcccccccceecCce--eEEEec-CCceEEEeecccccccchhhHHHHHHH-hHHHHHhcC
Q 007583 303 VGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL--KSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEAD 378 (597)
Q Consensus 303 VG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~--~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aD 378 (597)
+|..|+|||||+++++...... .. ..|+.... ..+.+. ....+.+|||+|. +.|.. +...+..+|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-~~-~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~---------e~~~~l~~~~~~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-KY-VATLGVEVHPLVFHTNRGPIRFNVWDTAGQ---------EKFGGLRDGYYIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-CC-CCceeEEEEEEEEEECCEEEEEEEEECCCc---------hhhhhhhHHHhcCCC
Confidence 6999999999999999654221 11 12222222 222321 2346789999998 33322 334577899
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
++++|+|+++.........+...+.... ...|+|+|.||+|+.
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~ 112 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccc
Confidence 9999999998644444444444444432 235999999999984
No 227
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=8.4e-12 Score=126.36 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|.|+|.||||||||+|+|...++...+..+++.+++.+.....++..++||||||+-+....+. +.-....+.+.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~-~~r~~~~d~l~ 116 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA-EHRQLYRDYLP 116 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH-HHHHHHHHHhh
Confidence 34677799999999999999999877777777777778877776666888999999999965322221 11233455667
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..|++++++|+.++........+.+++.... . +++++|+|.+|+..+
T Consensus 117 ~~DLvL~l~~~~draL~~d~~f~~dVi~~~~-~----~~~i~~VtQ~D~a~p 163 (296)
T COG3596 117 KLDLVLWLIKADDRALGTDEDFLRDVIILGL-D----KRVLFVVTQADRAEP 163 (296)
T ss_pred hccEEEEeccCCCccccCCHHHHHHHHHhcc-C----ceeEEEEehhhhhcc
Confidence 7999999999988765555556666554432 1 489999999998654
No 228
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.34 E-value=1.5e-11 Score=121.47 Aligned_cols=120 Identities=21% Similarity=0.316 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec---CCceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP---SGRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~---~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
|.|+++|++|||||||+++|.+...... ..++.+........ .+..+.+|||||+... .......+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~--------~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL--------RDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcEeecceEEEeecCCCCceEEEEECCCCHHH--------HHHHHHHH
Confidence 5799999999999999999998653211 12223333333331 3567899999999421 11223445
Q ss_pred Hhc-CEEEEEEeCCCCC--hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 375 VEA-DLLVHVLDCTAPN--LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 375 ~~a-DliL~VvDas~~~--~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
..+ +++++|+|+++.. .......+..++..... .....|+++|.||+|+..+..
T Consensus 70 ~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhcccCC
Confidence 666 9999999998751 11222233333332211 112359999999999986544
No 229
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.33 E-value=7.4e-12 Score=125.66 Aligned_cols=114 Identities=20% Similarity=0.151 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc----------------ccccccceecCceeEEEec---------CCceEEEeec
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLP---------SGRKVLLSDT 352 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~----------------~~~~~f~Tld~t~~~i~l~---------~g~~i~LiDT 352 (597)
++|+++|+.++|||||+++|+...-. .+...+.|+......+.+. .+..+.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999854311 1122334444433333332 1456789999
Q ss_pred ccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 353 VGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 353 pG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
||+... ...+...+..+|++++|+|+..+. ..+...++..+...++ |+|+|+||+|+..
T Consensus 81 PG~~~f--------~~~~~~~l~~aD~~ilVvD~~~g~-~~~t~~~l~~~~~~~~------p~ilviNKiD~~~ 139 (222)
T cd01885 81 PGHVDF--------SSEVTAALRLCDGALVVVDAVEGV-CVQTETVLRQALKERV------KPVLVINKIDRLI 139 (222)
T ss_pred CCcccc--------HHHHHHHHHhcCeeEEEEECCCCC-CHHHHHHHHHHHHcCC------CEEEEEECCCcch
Confidence 999431 133456677899999999999874 3444445555545453 8999999999863
No 230
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.33 E-value=2.3e-11 Score=119.58 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCCHHHHHH-HHHcCCCcccccccceecCcee-------E--------EEecCC--ceEEEeecccccccc
Q 007583 298 ATVAVVGYTNAGKSTLVS-ALSDSDLFSDARLFATLDPRLK-------S--------VVLPSG--RKVLLSDTVGFISDL 359 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLln-aL~g~~v~~~~~~f~Tld~t~~-------~--------i~l~~g--~~i~LiDTpG~i~~l 359 (597)
.+|+++|..|+|||||+. ++.+.... .........|+++ . +.+ +| ..+.+|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~-~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLT-QYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcc-cccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhh-
Confidence 589999999999999996 56543211 0000001122221 0 012 33 35679999998421
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+ +...+..+|++++|+|++++.+.+... .+...+.... ...|+|+|.||+|+..
T Consensus 80 -------~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 -------D--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRY 134 (195)
T ss_pred -------h--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccc
Confidence 1 112467899999999998875544443 3444444332 1359999999999864
No 231
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.32 E-value=4.9e-11 Score=111.90 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
.+|.++|..||||||++++|.+... +..-.|.-..+..+.+ .+..+.+||.-|+. .+...++. .+...
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----~lr~~W~n---Yfest 84 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----TLRSYWKN---YFEST 84 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEe-cceEEEEEEcCCcc-----hhHHHHHH---hhhcc
Confidence 7899999999999999999999762 2222334444556666 78899999999983 22333333 33458
Q ss_pred CEEEEEEeCCCCCh-HHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 378 DLLVHVLDCTAPNL-EEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 378 DliL~VvDas~~~~-~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
|.+++|+|.+++.. .+....+.+.|.+-.+ ...|++++.||.|+.++
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerl---aG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERL---AGAPLLVLANKQDLPGA 132 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhh---cCCceEEEEecCcCccc
Confidence 99999999987632 2333333344433222 23599999999998743
No 232
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.29 E-value=2.3e-11 Score=120.79 Aligned_cols=114 Identities=21% Similarity=0.191 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccc-------------------ccccceecCceeEEEec----CCceEEEeecccc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSD-------------------ARLFATLDPRLKSVVLP----SGRKVLLSDTVGF 355 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~-------------------~~~f~Tld~t~~~i~l~----~g~~i~LiDTpG~ 355 (597)
+|+++|+.|+|||||+++|++...... ...+.|.......+.+. ....+.++||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 699999999999999999987542211 11222333333333332 1356789999998
Q ss_pred cccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 356 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 356 i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
... ...+...+..+|++++|+|++++... ....+...+...+ .|+++|+||+|++..
T Consensus 82 ~~f--------~~~~~~~~~~aD~~llVvD~~~~~~~-~~~~~~~~~~~~~------~p~iiviNK~D~~~~ 138 (213)
T cd04167 82 VNF--------MDEVAAALRLSDGVVLVVDVVEGVTS-NTERLIRHAILEG------LPIVLVINKIDRLIL 138 (213)
T ss_pred cch--------HHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHHcC------CCEEEEEECcccCcc
Confidence 421 23345667789999999999876433 2333333333333 389999999998743
No 233
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=8.2e-11 Score=112.54 Aligned_cols=120 Identities=23% Similarity=0.218 Sum_probs=84.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
...++.++|.+|+|||.|+.+++.....+.......++...+.+.+ ++. ++.+|||.|+ +.|++ +..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGq---------e~frsv~~s 74 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQ---------ESFRSVTRS 74 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCc---------HHHHHHHHH
Confidence 3478999999999999999999987643333333334445555665 554 4579999999 67765 677
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.++.|-.+|+|+|++...+......++.-+.+.+. .+.-++++.||+||....
T Consensus 75 yYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~---~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 75 YYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN---ENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC---CCcEEEEEcchhhhhccc
Confidence 88899999999999876444444444444444432 234688999999997654
No 234
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.29 E-value=2.4e-11 Score=130.76 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=92.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhH--HHHHH-H
Q 007583 293 DGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQL--VDAFH-A 369 (597)
Q Consensus 293 ~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~l--ve~f~-s 369 (597)
.....+++.|+|++|+||||++|.++...+.+..+.|+|....++++.+ .-..+.++||||+...--.+. ++.-. .
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 3456789999999999999999999999999999999998888887776 667889999999976522222 22221 2
Q ss_pred hHHHHHhcCEEEEEEeCCCC--C-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 370 TLEEVVEADLLVHVLDCTAP--N-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 370 Tl~~l~~aDliL~VvDas~~--~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
.+.+++. ++||++|.|.. . ..+|.. +..-++.+ ..++|+|+|+||||+..++..
T Consensus 243 ALAHLra--aVLYfmDLSe~CGySva~Qvk-LfhsIKpL----FaNK~~IlvlNK~D~m~~edL 299 (620)
T KOG1490|consen 243 ALAHLRS--AVLYFMDLSEMCGYSVAAQVK-LYHSIKPL----FANKVTILVLNKIDAMRPEDL 299 (620)
T ss_pred HHHHhhh--hheeeeechhhhCCCHHHHHH-HHHHhHHH----hcCCceEEEeecccccCcccc
Confidence 3444444 48899999863 2 233332 22333322 234699999999999876544
No 235
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.4e-10 Score=113.28 Aligned_cols=118 Identities=23% Similarity=0.239 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
...+|.++|.+|+|||.|+-++..............++.....+.+ +|. .+.+|||.|+ +.|+. +..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQ---------erf~ti~~s 80 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQ---------ERFRTITTA 80 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccc---------hhHHHHHHH
Confidence 4589999999999999999999986633332223335667777777 444 4579999999 55644 667
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.++.|+.+++|+|+++..+.+....+...+++.. ....|.++|.||+|+..
T Consensus 81 YyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a---~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 81 YYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA---SDDVVKILVGNKCDLEE 131 (207)
T ss_pred HHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC---CCCCcEEEeeccccccc
Confidence 7888999999999998655555555555555543 23468999999999866
No 236
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.27 E-value=9.2e-11 Score=109.86 Aligned_cols=116 Identities=24% Similarity=0.252 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
+|+++|..|+|||||++++.+........+....+.....+.. ++. .+.+||++|.... ..+ ....+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~------~~~--~~~~~~~ 71 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERF------DSL--RDIFYRN 71 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGG------HHH--HHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccccc------ccc--ccccccc
Confidence 5899999999999999999986533222111112333334444 343 4679999997321 111 1234667
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|.+++........+...+....- ...|+++|.||+|+..
T Consensus 72 ~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 72 SDAIIIVFDVTDEESFENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp ESEEEEEEETTBHHHHHTHHHHHHHHHHHST---TTSEEEEEEETTTGGG
T ss_pred ccccccccccccccccccccccccccccccc---ccccceeeeccccccc
Confidence 9999999999876444444444444443332 2359999999999765
No 237
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.4e-10 Score=111.83 Aligned_cols=121 Identities=21% Similarity=0.245 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHh-HHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHAT-LEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sT-l~~ 373 (597)
..+++++|..++|||||+++++.......-+....+|.-...+.+ .+. ++.+|||+|+ +.|++. -..
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQ---------ERFrslipsY 91 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQ---------ERFRSLIPSY 91 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccH---------HHHhhhhhhh
Confidence 478999999999999999999976533222222334444445555 343 5689999999 677763 456
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHH-HcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQ-QVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~-~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
++.+.+++.|+|+++..+.++...+.+-+. +-|-.. .-+++|.||.||.+..+.
T Consensus 92 ~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~---viI~LVGnKtDL~dkrqv 146 (221)
T KOG0094|consen 92 IRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD---VIIFLVGNKTDLSDKRQV 146 (221)
T ss_pred ccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc---eEEEEEcccccccchhhh
Confidence 788999999999998766666655544333 333211 357899999999886544
No 238
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.4e-11 Score=133.83 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC---------------CcccccccceecCceeEEEecCCc--eEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD---------------LFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~---------------v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~ 358 (597)
++++++||-|...|||||..+|+... ...+...+.|+...+..+.+.+|. -+.++||||+.+.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 56899999999999999999997432 124456788888888888885544 5679999999542
Q ss_pred chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 359 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
.... .+-+..||.+++|||++.+ ...|+.......-+.|+ .+|.|+||||+..++..
T Consensus 139 -----s~EV---sRslaac~G~lLvVDA~qG-vqAQT~anf~lAfe~~L------~iIpVlNKIDlp~adpe 195 (650)
T KOG0462|consen 139 -----SGEV---SRSLAACDGALLVVDASQG-VQAQTVANFYLAFEAGL------AIIPVLNKIDLPSADPE 195 (650)
T ss_pred -----ccee---hehhhhcCceEEEEEcCcC-chHHHHHHHHHHHHcCC------eEEEeeeccCCCCCCHH
Confidence 1111 2334569999999999998 55666555555556666 68999999999876543
No 239
>PTZ00258 GTP-binding protein; Provisional
Probab=99.26 E-value=3.9e-11 Score=129.26 Aligned_cols=89 Identities=26% Similarity=0.380 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC----------------ceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG----------------RKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g----------------~~i~LiDTpG~i~~l 359 (597)
+...|+|||.||+|||||||+|++..+.+.+.+|+|.+|..+.+.+++. .++.++||||++...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 4579999999999999999999999988999999999999998887643 258999999998643
Q ss_pred hh--hHHHHHHHhHHHHHhcCEEEEEEeCC
Q 007583 360 PL--QLVDAFHATLEEVVEADLLVHVLDCT 387 (597)
Q Consensus 360 p~--~lve~f~sTl~~l~~aDliL~VvDas 387 (597)
.. .+. ...+..+..+|+++||+|+.
T Consensus 100 ~~g~gLg---~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLG---NAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHH---HHHHHHHHHCCEEEEEEeCC
Confidence 32 233 34467788899999999985
No 240
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.25 E-value=3.3e-11 Score=124.41 Aligned_cols=85 Identities=29% Similarity=0.506 Sum_probs=70.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc----------------eEEEeecccccccchh--
Q 007583 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR----------------KVLLSDTVGFISDLPL-- 361 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~----------------~i~LiDTpG~i~~lp~-- 361 (597)
|+|||.+|+|||||||+|++..+.+.+++|+|++|..+.+.+++.. .+.++||||++.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999999888899999999999988886532 4889999999865433
Q ss_pred hHHHHHHHhHHHHHhcCEEEEEEeCC
Q 007583 362 QLVDAFHATLEEVVEADLLVHVLDCT 387 (597)
Q Consensus 362 ~lve~f~sTl~~l~~aDliL~VvDas 387 (597)
.+.. ..+..++.+|+++||+|++
T Consensus 81 glg~---~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGN---KFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHH---HHHHHHHhCCEEEEEEeCc
Confidence 2333 3467788899999999985
No 241
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.24 E-value=2e-10 Score=117.28 Aligned_cols=132 Identities=19% Similarity=0.139 Sum_probs=81.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCceeEEEecCCceEEEeecccccccchhh-HHH-HHHHhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQ-LVD-AFHATLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~-lve-~f~sTl~ 372 (597)
...+|+|+|.+|+|||||+|+|+|..... ......|.......... ++..+.++||||+....... ... .......
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 45899999999999999999999987533 33334555554444444 67889999999997542111 111 1111111
Q ss_pred HH--HhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcEEEEEecCCCCCcccc
Q 007583 373 EV--VEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 373 ~l--~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
.+ ...|++++|..++..........+.+.+.+ +|. ....++|+|+||+|...++..
T Consensus 109 ~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~--~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP--SIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh--hhHhCEEEEEeCCccCCCCCC
Confidence 22 257888888766543222333334444443 452 223479999999999866543
No 242
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=7.5e-13 Score=138.77 Aligned_cols=127 Identities=18% Similarity=0.174 Sum_probs=91.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC--------C----------cccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD--------L----------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~--------v----------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
+++|+++.+..+||||.-.+|+-.. + .++...+.|+....-.+.| .|.++.++||||++..
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghvdf 115 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHVDF 115 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcceE
Confidence 4689999999999999999886321 0 1333455666555555666 7899999999999642
Q ss_pred chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccccc-cccccc
Q 007583 359 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 437 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~~-~~~i~~ 437 (597)
- -..-+.++..|.++.|+|++.+ .+.+.-.+|..-.++++ |.+.++||+|+..+.+.. ++.+.+
T Consensus 116 ~--------leverclrvldgavav~dasag-ve~qtltvwrqadk~~i------p~~~finkmdk~~anfe~avdsi~e 180 (753)
T KOG0464|consen 116 R--------LEVERCLRVLDGAVAVFDASAG-VEAQTLTVWRQADKFKI------PAHCFINKMDKLAANFENAVDSIEE 180 (753)
T ss_pred E--------EEHHHHHHHhcCeEEEEeccCC-cccceeeeehhccccCC------chhhhhhhhhhhhhhhhhHHHHHHH
Confidence 1 0112345668999999999987 67777777777777766 889999999998876542 555554
Q ss_pred cc
Q 007583 438 DD 439 (597)
Q Consensus 438 ~~ 439 (597)
.+
T Consensus 181 kl 182 (753)
T KOG0464|consen 181 KL 182 (753)
T ss_pred Hh
Confidence 44
No 243
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.22 E-value=5.4e-10 Score=110.80 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=67.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe--c-CCceEEEeecccccccchhhHHHHHHH-hH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL--P-SGRKVLLSDTVGFISDLPLQLVDAFHA-TL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l--~-~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl 371 (597)
...+|+++|++|||||||++++........ ...|.........+ . +...+.+|||+|... |.. ..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~---------~~~~~~ 76 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKK--YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK---------FGGLRD 76 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceEEEEEEEEECCeEEEEEEEECCCchh---------hhhhhH
Confidence 457899999999999999975543321111 12222222222221 1 234678999999732 211 22
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
..+..++++++|+|+++.........+...+.... ...|+++|+||+|+.
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC----ENIPIVLVGNKVDVK 126 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccCc
Confidence 33557899999999987543333333323232221 235899999999974
No 244
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.22 E-value=2.4e-11 Score=108.38 Aligned_cols=116 Identities=20% Similarity=0.215 Sum_probs=67.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc--cccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFS--DARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~--~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
+|+|+|..|+|||||+++|.+..... ......+........... ....+.++|++|...... .....+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS--------QHQFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC--------TSHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc--------cccchhh
Confidence 58999999999999999999876430 111111111111122221 122467999999832111 0111266
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
.+|++++|+|++++........+..++..+.-. ....|+|+|.||.|
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 799999999999864444444455555555321 12259999999998
No 245
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.21 E-value=5.6e-11 Score=138.44 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcc----------------cccccceecCceeEEEe--c-CCceEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS----------------DARLFATLDPRLKSVVL--P-SGRKVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~----------------~~~~f~Tld~t~~~i~l--~-~g~~i~LiDTpG~i 356 (597)
.+++|+++|+.++|||||+++|+...-.+ +.....|+......+.+ . .+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 46899999999999999999997533111 11223344444333333 1 35678999999994
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
. + ...+...+..+|++++|+|+..+ ...+...++..+...++ |.|+++||+|+...+
T Consensus 99 d-----f---~~~~~~~l~~~D~avlVvda~~g-~~~~t~~~~~~~~~~~~------~~iv~iNK~D~~~~~ 155 (731)
T PRK07560 99 D-----F---GGDVTRAMRAVDGAIVVVDAVEG-VMPQTETVLRQALRERV------KPVLFINKVDRLIKE 155 (731)
T ss_pred C-----h---HHHHHHHHHhcCEEEEEEECCCC-CCccHHHHHHHHHHcCC------CeEEEEECchhhccc
Confidence 3 1 13345567779999999999876 45566666666555564 779999999987654
No 246
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.20 E-value=8.1e-11 Score=112.41 Aligned_cols=121 Identities=24% Similarity=0.263 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccce--ecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-h
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFAT--LDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-T 370 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~T--ld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-T 370 (597)
...+|.++|.+|+|||||+|.+........ .++| .+.....+.+ ++. .+.+|||+|+ +.|++ .
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~q--ykaTIgadFltKev~V-d~~~vtlQiWDTAGQ---------ERFqsLg 75 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQ--YKATIGADFLTKEVQV-DDRSVTLQIWDTAGQ---------ERFQSLG 75 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHH--hccccchhheeeEEEE-cCeEEEEEEEecccH---------HHhhhcc
Confidence 678999999999999999999997652211 1222 2333444555 343 4579999999 55644 3
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 371 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 371 l~~l~~aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
...++.||..++|.|+..+...+....+.+ .|..........=|+|++.||+|+.+..
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~ 134 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK 134 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc
Confidence 455788999999999988755555555543 3444444333344999999999986644
No 247
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.20 E-value=1.7e-10 Score=123.18 Aligned_cols=124 Identities=23% Similarity=0.289 Sum_probs=85.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC----CCc------------cccccc---ceecCce---eEEEecCC----ceEEE
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS----DLF------------SDARLF---ATLDPRL---KSVVLPSG----RKVLL 349 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~----~v~------------~~~~~f---~Tld~t~---~~i~l~~g----~~i~L 349 (597)
|-..|+++|+.|+|||||+|++++. ++. +.+..+ +|++|.. ..+.+.-. .++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4589999999999999999999998 332 334445 7888876 44444333 68899
Q ss_pred eeccccccc---------------chhh-----HHHHH-HHhHHHHH-hcCEEEEEE-eCCC-----CChHHHHHHHHHH
Q 007583 350 SDTVGFISD---------------LPLQ-----LVDAF-HATLEEVV-EADLLVHVL-DCTA-----PNLEEHRTTVLQV 401 (597)
Q Consensus 350 iDTpG~i~~---------------lp~~-----lve~f-~sTl~~l~-~aDliL~Vv-Das~-----~~~~~~~~~v~~i 401 (597)
+||+||... -||. +.++. --|...+. .+|+.++|. |.+- ....+..+.+.+.
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999998632 1111 11111 12566666 799999988 7751 1234555667778
Q ss_pred HHHcCCCccCCCcEEEEEecCCCC
Q 007583 402 LQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 402 L~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
|++++. |+|+|+||+|-.
T Consensus 176 Lk~~~k------PfiivlN~~dp~ 193 (492)
T TIGR02836 176 LKELNK------PFIILLNSTHPY 193 (492)
T ss_pred HHhcCC------CEEEEEECcCCC
Confidence 888875 999999999943
No 248
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.19 E-value=2e-10 Score=113.69 Aligned_cols=118 Identities=18% Similarity=0.094 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceec--CceeEEEecC----C--ceEEEeecccccccchhhHHHHHHH-
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLD--PRLKSVVLPS----G--RKVLLSDTVGFISDLPLQLVDAFHA- 369 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld--~t~~~i~l~~----g--~~i~LiDTpG~i~~lp~~lve~f~s- 369 (597)
+|+++|.+|+|||||++++++....... ..|+. .....+.+.. + ..+.+|||+|.. .+..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~--~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e---------~~~~l 70 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRP--SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE---------SVKST 70 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC--CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch---------hHHHH
Confidence 6899999999999999999986533222 12222 2222333321 2 356899999983 2322
Q ss_pred hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC----------------CccCCCcEEEEEecCCCCCc
Q 007583 370 TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV----------------SEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 370 Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi----------------~~~~~~P~IiVlNKiDl~~~ 427 (597)
.-..+..+|++++|+|++++.+.+....+...+..... ......|+|+|.||+|+.+.
T Consensus 71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 23456789999999999987555555444433332110 01123599999999999754
No 249
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.18 E-value=1.8e-10 Score=122.91 Aligned_cols=89 Identities=27% Similarity=0.425 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC----------------ceEEEeecccccccchh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG----------------RKVLLSDTVGFISDLPL 361 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g----------------~~i~LiDTpG~i~~lp~ 361 (597)
.+|+|||.||+|||||+|+|++....+.+.+|+|++|..+.+.+++. ..+.++||||++.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 58999999999999999999999888889999999999988887653 24899999999864322
Q ss_pred hHHHHHHHhHHHHHhcCEEEEEEeCC
Q 007583 362 QLVDAFHATLEEVVEADLLVHVLDCT 387 (597)
Q Consensus 362 ~lve~f~sTl~~l~~aDliL~VvDas 387 (597)
. ...-...+..+..+|+++||+|++
T Consensus 83 g-~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 G-EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred H-HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 111234577888999999999985
No 250
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.17 E-value=2.6e-10 Score=120.73 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.3
Q ss_pred CcEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007583 538 APDVKISARTGVGLQELLEIIDERLKTL 565 (597)
Q Consensus 538 ~pvv~vSA~tG~Gi~eLL~~I~~~~~~~ 565 (597)
.||+++||.+|.||++|++.|.++++-+
T Consensus 235 ~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 235 PPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999999987743
No 251
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.17 E-value=4.7e-10 Score=117.07 Aligned_cols=130 Identities=17% Similarity=0.174 Sum_probs=79.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccc-cccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHH-
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDA-RLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEE- 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~-~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~- 373 (597)
...+|+++|.+|+||||++|+|+|..+...+ ....|..++...... +|..+.++||||+.+.. ...+.....+..
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~--~~~e~~~~~ik~~ 113 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGG--YINDQAVNIIKRF 113 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEECCCCCchH--HHHHHHHHHHHHH
Confidence 4579999999999999999999998764332 223334444444444 78899999999997531 111111111111
Q ss_pred --HHhcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 374 --VVEADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 374 --l~~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
....|++++|........... ...+..+...+|- ....++|+|++++|...++..
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~~pd~~ 171 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK--DIWRKSLVVLTHAQFSPPDGL 171 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh--hhhccEEEEEECCccCCCCCC
Confidence 125899999955433222222 3333333333442 233589999999998765443
No 252
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.16 E-value=5.2e-10 Score=113.48 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCce---------------------------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL--------------------------------------- 336 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~--------------------------------------- 336 (597)
..|.++++|++||||||++++|+|......+.-..|..|+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999874211111111111110
Q ss_pred ------------eEEEecCCceEEEeeccccccc----chhhHHHHHHH-hHHHHH-hcCEEEEEEeCCCCChHHHHHHH
Q 007583 337 ------------KSVVLPSGRKVLLSDTVGFISD----LPLQLVDAFHA-TLEEVV-EADLLVHVLDCTAPNLEEHRTTV 398 (597)
Q Consensus 337 ------------~~i~l~~g~~i~LiDTpG~i~~----lp~~lve~f~s-Tl~~l~-~aDliL~VvDas~~~~~~~~~~v 398 (597)
-.+..|+...+.++||||+... .+..+...+.. +..++. ..+++++|+|+...........+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0111123356789999999742 12333333433 455555 35699999998765343333445
Q ss_pred HHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 399 LQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 399 ~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.+.+...+. |.|+|+||+|..+..
T Consensus 185 a~~ld~~~~------rti~ViTK~D~~~~~ 208 (240)
T smart00053 185 AKEVDPQGE------RTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHcCC------cEEEEEECCCCCCcc
Confidence 555555553 899999999998643
No 253
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.16 E-value=1.4e-10 Score=136.83 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=83.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc----------------ccccccceecCceeEEEec---------------CC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLP---------------SG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~----------------~~~~~f~Tld~t~~~i~l~---------------~g 344 (597)
.+++|+|+|+.++|||||+++|+...-. .+.....|+......+.+. ++
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 5789999999999999999999854311 1122333444333334432 24
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
..+.++||||+. +....+...+..+|.+++|+|+..+ ...+.+.++..+...++ |+|+++||+|+
T Consensus 98 ~~inliDtPGh~--------dF~~e~~~al~~~D~ailVvda~~G-v~~~t~~~~~~~~~~~~------p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERI------RPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHH--------HHHHHHHHHHhhcCEEEEEEECCCC-CcccHHHHHHHHHHCCC------CEEEEEECCcc
Confidence 567899999993 2234456677889999999999987 55666777777777665 89999999999
Q ss_pred C
Q 007583 425 H 425 (597)
Q Consensus 425 ~ 425 (597)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 8
No 254
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.16 E-value=2.1e-10 Score=108.60 Aligned_cols=113 Identities=31% Similarity=0.264 Sum_probs=71.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEE---------------------------------------
Q 007583 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVV--------------------------------------- 340 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~--------------------------------------- 340 (597)
|+++|..+||||||+|+|+|..+...+...+|..++.-...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999875444433433333211000
Q ss_pred ----------------ecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHH
Q 007583 341 ----------------LPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ 404 (597)
Q Consensus 341 ----------------l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~ 404 (597)
.+....+.|+||||+-....... ..+.+.+..+|++++|+++.+.........+.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~----~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~ 156 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT----EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP 156 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS----HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH----HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC
Confidence 01123468999999955322111 3345556789999999999887555555555554443
Q ss_pred cCCCccCCCcEEEEEecC
Q 007583 405 VGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 405 lgi~~~~~~P~IiVlNKi 422 (597)
.. ..+|+|+||+
T Consensus 157 ~~------~~~i~V~nk~ 168 (168)
T PF00350_consen 157 DK------SRTIFVLNKA 168 (168)
T ss_dssp TC------SSEEEEEE-G
T ss_pred CC------CeEEEEEcCC
Confidence 33 2589999995
No 255
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.16 E-value=5.9e-10 Score=112.05 Aligned_cols=109 Identities=24% Similarity=0.312 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
....|+++|++|+|||||+|+|++.... .......+ . .+..+.+..+.++||||.+ ..++..+
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~-----------~~~l~~a 101 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI-----------NAMIDIA 101 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH-----------HHHHHHH
Confidence 4578999999999999999999985311 11111111 1 1223467889999999973 2234456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++.+ .......++.++...+. | +|+|+||+|++..
T Consensus 102 k~aDvVllviDa~~~-~~~~~~~i~~~l~~~g~------p~vi~VvnK~D~~~~ 148 (225)
T cd01882 102 KVADLVLLLIDASFG-FEMETFEFLNILQVHGF------PRVMGVLTHLDLFKK 148 (225)
T ss_pred HhcCEEEEEEecCcC-CCHHHHHHHHHHHHcCC------CeEEEEEeccccCCc
Confidence 779999999999876 34445567777777665 6 4559999998754
No 256
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.3e-10 Score=113.42 Aligned_cols=118 Identities=21% Similarity=0.224 Sum_probs=90.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
-.++|+++|.+|+|||-|+.+++.......+......+..++.+.+ ++. ...+|||+|+ +.|++ +-.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQ---------ERyrAitSa 82 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQ---------ERYRAITSA 82 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccch---------hhhccccch
Confidence 4588999999999999999999998876666655556666667766 555 4479999999 55544 566
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.++.|-.+++|.|++...+ .+.+..||.++.-....+.++++|.||+||..
T Consensus 83 YYrgAvGAllVYDITr~~T---fenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQT---FENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hhcccceeEEEEechhHHH---HHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 7788999999999986533 44555666666544444568999999999976
No 257
>PTZ00416 elongation factor 2; Provisional
Probab=99.14 E-value=2.1e-10 Score=135.31 Aligned_cols=115 Identities=20% Similarity=0.179 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc----------------ccccccceecCceeEEEec---------CCceEEEe
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLP---------SGRKVLLS 350 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~----------------~~~~~f~Tld~t~~~i~l~---------~g~~i~Li 350 (597)
.+++|+++|+.++|||||+++|+...-. .+...+.|++.....+.+. .+..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 4689999999999999999999864311 1122333444333334442 14568999
Q ss_pred ecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 351 DTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 351 DTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
||||+.. ....+...+..+|++++|+|+..+ ...+.+.++..+...++ |+|+|+||+|+.
T Consensus 98 DtPG~~~--------f~~~~~~al~~~D~ailVvda~~g-~~~~t~~~~~~~~~~~~------p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD--------FSSEVTAALRVTDGALVVVDCVEG-VCVQTETVLRQALQERI------RPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh--------HHHHHHHHHhcCCeEEEEEECCCC-cCccHHHHHHHHHHcCC------CEEEEEEChhhh
Confidence 9999942 223346667889999999999887 55666777777776664 899999999997
No 258
>PLN00023 GTP-binding protein; Provisional
Probab=99.14 E-value=3.8e-10 Score=118.45 Aligned_cols=121 Identities=20% Similarity=0.147 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecC--ceeEEEecC--------------CceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDP--RLKSVVLPS--------------GRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~--t~~~i~l~~--------------g~~i~LiDTpG~i~~l 359 (597)
+..+|+|+|..|+|||||++++.+....... ..|+.. ....+.+.+ ...+.||||+|..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~--~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE--- 94 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARP--PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE--- 94 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCccccc--CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh---
Confidence 4579999999999999999999986532211 122211 223333321 1347899999983
Q ss_pred hhhHHHHHHH-hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC---------ccCCCcEEEEEecCCCCCc
Q 007583 360 PLQLVDAFHA-TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS---------EEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 360 p~~lve~f~s-Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~---------~~~~~P~IiVlNKiDl~~~ 427 (597)
.|.. .-..+..+|++++|+|+++.........+.+.+...+-. .....|+|+|.||+|+...
T Consensus 95 ------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 ------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 3332 223467899999999999865555555555555443210 0123589999999999654
No 259
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.9e-10 Score=118.52 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=84.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC--C-----------------------------cccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD--L-----------------------------FSDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~--v-----------------------------~~~~~~f~Tld~t~~~i~l~~g 344 (597)
...+++++|+.++|||||+-+|+-.. + ..+...+.|++.+...+.. +.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k 84 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK 84 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence 45799999999999999999997321 0 1233456666666655555 55
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCC------hHHHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN------LEEHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~------~~~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.++|+||+. ..+..+......||++++|+|++.+. ...+.....-+...+|+. .+|++
T Consensus 85 ~~~tIiDaPGHr--------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~-----~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGHR--------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK-----QLIVA 151 (428)
T ss_pred ceEEEeeCCchH--------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc-----eEEEE
Confidence 678999999973 23456677778899999999998873 233444444556667874 58999
Q ss_pred EecCCCCC
Q 007583 419 WNKIDYHD 426 (597)
Q Consensus 419 lNKiDl~~ 426 (597)
+||+|.++
T Consensus 152 vNKMD~v~ 159 (428)
T COG5256 152 VNKMDLVS 159 (428)
T ss_pred EEcccccc
Confidence 99999987
No 260
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.3e-10 Score=119.65 Aligned_cols=115 Identities=25% Similarity=0.263 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC---CcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD---LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~---v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.|+..|+...|||||+++++|.. .......+.|.|........+++ .+.++|+||+- ....+.+..+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~-~~~fIDvpgh~--------~~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG-VMGFIDVPGHP--------DFISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC-ceEEeeCCCcH--------HHHHHHHhhhc
Confidence 68899999999999999999965 35677888999988877777444 78899999991 22355666777
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..|.+++|||+.++ ...+.-....+|+.+|+. ..|+|+||+|++++.
T Consensus 73 ~~d~alLvV~~deG-l~~qtgEhL~iLdllgi~-----~giivltk~D~~d~~ 119 (447)
T COG3276 73 GIDYALLVVAADEG-LMAQTGEHLLILDLLGIK-----NGIIVLTKADRVDEA 119 (447)
T ss_pred CCceEEEEEeCccC-cchhhHHHHHHHHhcCCC-----ceEEEEeccccccHH
Confidence 89999999999877 455666666899999984 469999999998764
No 261
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=1.4e-10 Score=124.20 Aligned_cols=119 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---------------cccccccceecCceeEEEec--CCc--eEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---------------FSDARLFATLDPRLKSVVLP--SGR--KVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---------------~~~~~~f~Tld~t~~~i~l~--~g~--~i~LiDTpG~i 356 (597)
++++.+|+-|-..|||||-.+|..... ..+...+.|+....-.+.+. +|. .+.++||||++
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 578999999999999999999974321 24456677777666555553 333 45799999996
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHH-HHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTT-VLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~-v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
+.. ....+.+..|..+++|||++.+ .+.|+-. +.-.+ +.++ -+|-|+||+||..++..
T Consensus 88 DFs--------YEVSRSLAACEGalLvVDAsQG-veAQTlAN~YlAl-e~~L------eIiPViNKIDLP~Adpe 146 (603)
T COG0481 88 DFS--------YEVSRSLAACEGALLVVDASQG-VEAQTLANVYLAL-ENNL------EIIPVLNKIDLPAADPE 146 (603)
T ss_pred ceE--------EEehhhHhhCCCcEEEEECccc-hHHHHHHHHHHHH-HcCc------EEEEeeecccCCCCCHH
Confidence 421 1112335558999999999987 4444322 22222 2333 58999999999877643
No 262
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.4e-10 Score=117.47 Aligned_cols=120 Identities=26% Similarity=0.307 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCc-----ee---------------EEEecCC------ce
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPR-----LK---------------SVVLPSG------RK 346 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t-----~~---------------~i~l~~g------~~ 346 (597)
.-.+|++||+...|||||.++|+|--. ..+-....|+... .+ .... +| +.
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~-cg~~~~l~R~ 87 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPN-CGAETELVRR 87 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCC-CCCCccEEEE
Confidence 457999999999999999999998431 1111112221110 00 0000 11 35
Q ss_pred EEEeecccccccchhhHHHHH-HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 347 VLLSDTVGFISDLPLQLVDAF-HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 347 i~LiDTpG~i~~lp~~lve~f-~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+-++|.||+ +.. ...+......|.+++|+.+..+-...|....+-.|+-+|+ +.+|+|-||+|++
T Consensus 88 VSfVDaPGH---------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi-----k~iiIvQNKIDlV 153 (415)
T COG5257 88 VSFVDAPGH---------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI-----KNIIIVQNKIDLV 153 (415)
T ss_pred EEEeeCCch---------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc-----ceEEEEeccccee
Confidence 679999999 333 4456777778999999999988666777766677888887 4689999999999
Q ss_pred Ccccc
Q 007583 426 DEEMG 430 (597)
Q Consensus 426 ~~~~~ 430 (597)
+.+..
T Consensus 154 ~~E~A 158 (415)
T COG5257 154 SRERA 158 (415)
T ss_pred cHHHH
Confidence 87654
No 263
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.09 E-value=3.5e-09 Score=101.57 Aligned_cols=119 Identities=26% Similarity=0.241 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-------ccc---cccceecCceeEEEecCCceEEEeecccccccchhhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-------SDA---RLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVD 365 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-------~~~---~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve 365 (597)
...+|+++|+.|+||||+++++...... ... ...+|+....+.+.+.++..+.|.||||+ .
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq---------~ 79 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ---------E 79 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc---------H
Confidence 3579999999999999999999875421 111 12355666677777766689999999999 3
Q ss_pred HHHHhHH-HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 366 AFHATLE-EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 366 ~f~sTl~-~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.|.-.++ ..+.+..+++++|.+.+... ....+.+.+..... .|++++.||.|+.+...
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-----ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-----IPVVVAINKQDLFDALP 138 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-----CCEEEEeeccccCCCCC
Confidence 4444343 23458899999999987544 44455555555441 39999999999987653
No 264
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.9e-10 Score=106.17 Aligned_cols=120 Identities=24% Similarity=0.259 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
...|++||..|+|||.|+++++....+...-.....+.-+..+.+ +|. ++.+|||+|+ +.|++ |...
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagq---------erfrsitqsy 76 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQ---------ERFRSITQSY 76 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccch---------HHHHHHHHHH
Confidence 578999999999999999999976544443222234455556666 444 5679999999 66765 6778
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
++.|+.+++|.|++-.+...... +||.++.-......--|+|.||+|+.+..+
T Consensus 77 yrsahalilvydiscqpsfdclp---ewlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 77 YRSAHALILVYDISCQPSFDCLP---EWLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred hhhcceEEEEEecccCcchhhhH---HHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 88899999999998654444433 444444322222234689999999977643
No 265
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.08 E-value=6.7e-10 Score=118.86 Aligned_cols=119 Identities=22% Similarity=0.218 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
.+++|||+-|...|||||+..|+...- ..+...+.|+-.....+.| ++..+.++||||+...
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADF- 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADF- 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCc-
Confidence 578999999999999999999986431 1233445555444445666 7899999999999432
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
.... -+-+...|.++++||+..+. ..|...+..-.-+.|+ +.|+|+||+|+.++...
T Consensus 82 ----GGEV---ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~gL------~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 82 ----GGEV---ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALALGL------KPIVVINKIDRPDARPD 138 (603)
T ss_pred ----cchh---hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHcCC------CcEEEEeCCCCCCCCHH
Confidence 2222 22345689999999999984 4566666554445676 55899999999876543
No 266
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.07 E-value=1.4e-09 Score=112.69 Aligned_cols=125 Identities=23% Similarity=0.297 Sum_probs=72.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccccc--------cccee--cCceeEEEecCC--ceEEEeecccccccchh---
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDAR--------LFATL--DPRLKSVVLPSG--RKVLLSDTVGFISDLPL--- 361 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~--------~f~Tl--d~t~~~i~l~~g--~~i~LiDTpG~i~~lp~--- 361 (597)
..+|+++|.+|+|||||+|+|.+..+..... ...|+ ......+.. +| ..+.++|||||-.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchhh
Confidence 3689999999999999999999987543321 12222 222222322 44 35789999998543221
Q ss_pred --h----HHHHHHHhHHH---------H--HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 362 --Q----LVDAFHATLEE---------V--VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 362 --~----lve~f~sTl~~---------l--~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
. +...|...+.+ + ..+|+++++++.+..........+++.|.. + .|+|+|+||+|+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~------v~vi~VinK~D~ 155 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-R------VNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-c------CCEEEEEECCCc
Confidence 1 11122221111 1 136788999987642222222223333332 2 489999999999
Q ss_pred CCccc
Q 007583 425 HDEEM 429 (597)
Q Consensus 425 ~~~~~ 429 (597)
+...+
T Consensus 156 l~~~e 160 (276)
T cd01850 156 LTPEE 160 (276)
T ss_pred CCHHH
Confidence 87543
No 267
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.07 E-value=1.6e-09 Score=106.97 Aligned_cols=119 Identities=24% Similarity=0.246 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC--CceEEEeecccccccchhhHHHHHHHh-HHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS--GRKVLLSDTVGFISDLPLQLVDAFHAT-LEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~--g~~i~LiDTpG~i~~lp~~lve~f~sT-l~~l 374 (597)
..|+++|..|||||||+++|.+........+..+ ........... ...+.+|||+|+ +.++.. -...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~~Dt~gq---------~~~~~~~~~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG-NLDPAKTIEPYRRNIKLQLWDTAGQ---------EEYRSLRPEYY 75 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee-eeeEEEEEEeCCCEEEEEeecCCCH---------HHHHHHHHHHh
Confidence 7899999999999999999998764433322211 12222222222 356789999999 344433 3455
Q ss_pred HhcCEEEEEEeCCC-CChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 375 VEADLLVHVLDCTA-PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 375 ~~aDliL~VvDas~-~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
..++.+++|+|.+. ....+....+...+..... ...|+++|.||+|+.....
T Consensus 76 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 76 RGANGILIVYDSTLRESSDELTEEWLEELRELAP---DDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC---CCceEEEEecccccccchh
Confidence 78999999999886 4455555666656555442 1249999999999987654
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.07 E-value=3.5e-10 Score=109.80 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe--cCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL--PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l--~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
+.|.|+|++|||||+|+..|...... ...+++.+... ..+ ..+..+.++|+||+-+- -.. +...+....
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~---~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rl-r~~----~~~~~~~~~ 74 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV---PTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRL-RSK----LLDELKYLS 74 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEE-CCGSSTCGTCECEEEETT-HCC-CHH----HHHHHHHHG
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC---CeeccccCCce-EEeecCCCCEEEEEECCCcHHH-HHH----HHHhhhchh
Confidence 79999999999999999999976411 11112222211 111 34668899999999432 122 222222466
Q ss_pred hcCEEEEEEeCCCC--ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 376 EADLLVHVLDCTAP--NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 376 ~aDliL~VvDas~~--~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.+..++||+|++.. ...+..+.+.++|...... ....|++++.||.|+..+..
T Consensus 75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT---
T ss_pred hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCccccccCC
Confidence 78999999998742 1122233444444444322 22359999999999987653
No 269
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.2e-09 Score=101.25 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=84.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
..++.++|+.|+|||.|+..+...............+...+.+.. ++. ++.+|||+|+ +.|++ +...
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQ---------ErFRSVtRsY 78 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQ---------ERFRSVTRSY 78 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccH---------HHHHHHHHHH
Confidence 478999999999999999999876532222222223334444444 444 5579999999 77876 6677
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
++.|-.+++|.|+++. +....+.+||.........+.-+|++.||.|+....+.
T Consensus 79 YRGAAGAlLVYD~Tsr---dsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V 132 (214)
T KOG0086|consen 79 YRGAAGALLVYDITSR---DSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV 132 (214)
T ss_pred hccccceEEEEeccch---hhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh
Confidence 8889899999999875 45566667777765544444467888999998665443
No 270
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3.6e-10 Score=119.31 Aligned_cols=88 Identities=30% Similarity=0.510 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC-----------------ceEEEeecccccccch
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-----------------RKVLLSDTVGFISDLP 360 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g-----------------~~i~LiDTpG~i~~lp 360 (597)
..++|||-||+|||||||+||...+.+.+++|+|++|..+.+..++- .++.++|.+|++..-.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 68999999999999999999999988899999999999998877541 1457999999986533
Q ss_pred --hhHHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007583 361 --LQLVDAFHATLEEVVEADLLVHVLDCTA 388 (597)
Q Consensus 361 --~~lve~f~sTl~~l~~aDliL~VvDas~ 388 (597)
..|.+.| |..++.+|+++||||++.
T Consensus 83 ~GeGLGNkF---L~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKF---LDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHH---HHhhhhcCeEEEEEEecC
Confidence 3566667 778888999999999973
No 271
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.03 E-value=6.6e-09 Score=108.94 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.2
Q ss_pred cEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007583 539 PDVKISARTGVGLQELLEIIDERLKTL 565 (597)
Q Consensus 539 pvv~vSA~tG~Gi~eLL~~I~~~~~~~ 565 (597)
|++++||.+|.|+++|++.|.+++...
T Consensus 214 ~v~~iSA~~g~Gi~~L~~~i~~~~~~~ 240 (300)
T TIGR00750 214 PVLTTSAVEGRGIDELWDAIEEHKTFL 240 (300)
T ss_pred CEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999986643
No 272
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.03 E-value=7e-10 Score=129.10 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=78.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEE---EecCCceEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSV---VLPSGRKVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i---~l~~g~~i~LiDTpG~i 356 (597)
.+++|+++|+.|+|||||+++|+...- ..+.....|+....... ....+..+.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 468999999999999999999974210 11111233443332221 11245688999999995
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.. . ..+...+..+|++++|+|+..+ ...+...++..+...++ |.++|+||+|+...+.
T Consensus 98 ~f-----~---~~~~~al~~aD~~llVvda~~g-~~~~t~~~~~~~~~~~~------p~ivviNKiD~~~~~~ 155 (720)
T TIGR00490 98 DF-----G---GDVTRAMRAVDGAIVVVCAVEG-VMPQTETVLRQALKENV------KPVLFINKVDRLINEL 155 (720)
T ss_pred cc-----H---HHHHHHHHhcCEEEEEEecCCC-CCccHHHHHHHHHHcCC------CEEEEEEChhcccchh
Confidence 31 1 2345567789999999999876 34444555555555554 7899999999986553
No 273
>PRK13768 GTPase; Provisional
Probab=99.02 E-value=2.1e-09 Score=109.96 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=45.4
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHh--cCEEEEEEeCCCCChHHHHHHHH--HHHHHcCCCccCCCcEEEEEe
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVE--ADLLVHVLDCTAPNLEEHRTTVL--QVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~--aDliL~VvDas~~~~~~~~~~v~--~iL~~lgi~~~~~~P~IiVlN 420 (597)
..++++||||.++...+. .........+.. ++++++|+|++............ ........ ..|+|+|+|
T Consensus 97 ~~~~~~d~~g~~~~~~~~--~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~----~~~~i~v~n 170 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFR--ESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL----GLPQIPVLN 170 (253)
T ss_pred CCEEEEeCCcHHHHHhhh--HHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc----CCCEEEEEE
Confidence 368999999987643221 112222233333 89999999997643222222211 11111111 249999999
Q ss_pred cCCCCCccc
Q 007583 421 KIDYHDEEM 429 (597)
Q Consensus 421 KiDl~~~~~ 429 (597)
|+|+.+..+
T Consensus 171 K~D~~~~~~ 179 (253)
T PRK13768 171 KADLLSEEE 179 (253)
T ss_pred hHhhcCchh
Confidence 999987644
No 274
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.02 E-value=1.4e-09 Score=101.79 Aligned_cols=119 Identities=22% Similarity=0.204 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
...|.|+|.+|+|||||+-+++..............+..+..+.+ +|. ++.+|||+|+ +.|+. |-..
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGq---------ErFRtLTpSy 80 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQ---------ERFRTLTPSY 80 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccch---------HhhhccCHhH
Confidence 478999999999999999999986543333222234555555665 554 5679999999 66765 7778
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
++.|-.+++|.|++..........+.+.++..... .+.-.++|.||+|..+.
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn--~diikmlVgNKiDkes~ 132 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN--PDIIKMLVGNKIDKESE 132 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC--ccHhHhhhcccccchhc
Confidence 89999999999998765555544444444333222 12245789999997643
No 275
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.1e-09 Score=107.10 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=79.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
.+.|.++|+.+||||+|+-.|.... ....+++..|..+...+ +.....++|-||+.+- -..+.+.+ .....
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~-gs~~~~LVD~PGH~rl-R~kl~e~~----~~~~~ 108 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRL-GSENVTLVDLPGHSRL-RRKLLEYL----KHNYS 108 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEee-cCcceEEEeCCCcHHH-HHHHHHHc----ccccc
Confidence 3689999999999999998887542 12233445666666666 4555889999999431 11222222 11235
Q ss_pred cCEEEEEEeCCCC--ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 377 ADLLVHVLDCTAP--NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 377 aDliL~VvDas~~--~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
+..+++|||+... +..+.-+.+..+|-.... .....|++++.||.|+..+...
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~ 163 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTA 163 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcH
Confidence 7889999998642 233333444455444432 1233589999999999877644
No 276
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.02 E-value=5.8e-10 Score=111.25 Aligned_cols=123 Identities=28% Similarity=0.329 Sum_probs=97.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 294 GRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 294 ~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
++|-.+|+++|+|.+|||||+..|++......++.|+|+....+.+.+ +|..+.+.|.||+|+...+.- ..-++....
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgk-GRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGK-GRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCC-CCCceEEEE
Confidence 356789999999999999999999998878888999999888888887 899999999999987644321 111233444
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEe
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlN 420 (597)
.+.||++++|+|++.. +.+.+.+...|+..|+...+.+|-|.+--
T Consensus 137 ArtaDlilMvLDatk~--e~qr~~le~ELe~vGiRLNk~~Pniy~k~ 181 (364)
T KOG1486|consen 137 ARTADLILMVLDATKS--EDQREILEKELEAVGIRLNKRKPNIYFKK 181 (364)
T ss_pred eecccEEEEEecCCcc--hhHHHHHHHHHHHhceeccCCCCCeEEEe
Confidence 5669999999999864 67777888999999987666667665433
No 277
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.01 E-value=7.4e-10 Score=103.30 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=73.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecC--ceeEEEec-CCceEEEeecccccccchhhHHHHHHH-hHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDP--RLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~--t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
.+.++++|...+|||||+-+....... .....|+.. ....+.+. ...++.+|||+|+ +.|.+ .-.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQ---------ErfHALGPI 81 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQ---------ERFHALGPI 81 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHHHHhhcccccccceeeeeeeeccch---------HhhhccCce
Confidence 478999999999999999888765421 111222221 12222231 1235689999999 44543 233
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.++.++.+++|+|+++.++.+. +.+|..++.........++||.||+|+...
T Consensus 82 YYRgSnGalLVyDITDrdSFqK---VKnWV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 82 YYRGSNGALLVYDITDRDSFQK---VKNWVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred EEeCCCceEEEEeccchHHHHH---HHHHHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 5677999999999998654444 444444432211122368999999998544
No 278
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.01 E-value=1.6e-09 Score=111.16 Aligned_cols=59 Identities=31% Similarity=0.386 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHc
Q 007583 256 LQRRRILERRSHLLSQIEEVRRT-RAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 256 ~~rr~i~~ri~~l~~~L~~~~~~-r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
-+||.+++-|..++..-.+-+.. ++..+......| +..+|+|.|.||||||||+.+|..
T Consensus 14 GdrrAlARaITlvEs~~~~h~~~a~~ll~~l~p~tG-----~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 14 GDRRALARAITLVESRRPDHRALARELLRALYPRTG-----NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCHHHHHHHHHHHhcCCchhhhHHHHHHHHHhhcCC-----CCcEEEecCCCCCchHHHHHHHHH
Confidence 36889998888765544432111 233333333332 457999999999999999999963
No 279
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.3e-09 Score=108.07 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=90.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC----------------CcccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD----------------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~----------------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+.+|+.+.|||||..+|++.. .+.+...+.|+.+..-.... ..+.+-.+|.||+.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHa--- 86 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA--- 86 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChH---
Confidence 45799999999999999999998531 13344566777766555554 67788999999993
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
...+..+.....+|..++|+.+.++.+.+..+++ -+.++.|++ .+++++||+|++++.+.
T Consensus 87 -----DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-LlarqvGvp-----~ivvflnK~Dmvdd~el 146 (394)
T COG0050 87 -----DYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQVGVP-----YIVVFLNKVDMVDDEEL 146 (394)
T ss_pred -----HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-hhhhhcCCc-----EEEEEEecccccCcHHH
Confidence 3456667777889999999999998766666655 355677873 47889999999986544
No 280
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.99 E-value=5.2e-09 Score=104.23 Aligned_cols=127 Identities=20% Similarity=0.250 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccc--cccceecCceeEEEecCCceEEEeecccccccch--hhHHHHHHHhH-HH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDA--RLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP--LQLVDAFHATL-EE 373 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~--~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp--~~lve~f~sTl-~~ 373 (597)
+|.|+|.+||||||+.|.|+|....... ....|.........+ +|..+.++||||+..... ......+...+ ..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 6899999999999999999998864433 233455555555555 899999999999954311 12212221111 12
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
....+++++|+.... ........+..+.+.+|- ...+.+|+|++..|...+..
T Consensus 81 ~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~--~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGE--EIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp TT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCG--GGGGGEEEEEEEGGGGTTTT
T ss_pred cCCCeEEEEEEecCc-chHHHHHHHHHHHHHccH--HHHhHhhHHhhhcccccccc
Confidence 345789999999883 345555555555555663 23457999999999766543
No 281
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.97 E-value=6e-10 Score=113.05 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=35.4
Q ss_pred eEEEeecccccccchhhHH-HHHHHhHHHHHhcCEEEEEEeCCCCChHH----HHHHHHHHHHHcCCCccCCCcEEEEEe
Q 007583 346 KVLLSDTVGFISDLPLQLV-DAFHATLEEVVEADLLVHVLDCTAPNLEE----HRTTVLQVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 346 ~i~LiDTpG~i~~lp~~lv-e~f~sTl~~l~~aDliL~VvDas~~~~~~----~~~~v~~iL~~lgi~~~~~~P~IiVlN 420 (597)
.+.++||||+++-..+.-. ..+-..+.. ...-++++++|+....... ..-....++-.+++ |.|.|+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l------P~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL------PHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS------EEEEEE-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC------CEEEeee
Confidence 6799999999764332211 111111111 2234688999986432111 11112233444565 9999999
Q ss_pred cCCCCCcc
Q 007583 421 KIDYHDEE 428 (597)
Q Consensus 421 KiDl~~~~ 428 (597)
|+|+.+..
T Consensus 165 K~Dl~~~~ 172 (238)
T PF03029_consen 165 KIDLLSKY 172 (238)
T ss_dssp -GGGS-HH
T ss_pred ccCcccch
Confidence 99998854
No 282
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.9e-09 Score=109.32 Aligned_cols=118 Identities=25% Similarity=0.360 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-------CcccccccceecCceeEEEe------cCCc--eEEEeecccccccchhh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD-------LFSDARLFATLDPRLKSVVL------PSGR--KVLLSDTVGFISDLPLQ 362 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~-------v~~~~~~f~Tld~t~~~i~l------~~g~--~i~LiDTpG~i~~lp~~ 362 (597)
.+++++|+..+|||||.++|.... .+.+...+.|+|........ |.+. ++.++|.||+. .
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa-----s 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA-----S 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH-----H
Confidence 789999999999999999997532 12233355566654433333 2332 45899999992 2
Q ss_pred HHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 363 LVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 363 lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
+ ++..+....-.|+.++|+|+..+ ...+....+ ++.++-. +..|+|+||+|...+.+.
T Consensus 83 L---IRtiiggaqiiDlm~lviDv~kG-~QtQtAEcL-iig~~~c-----~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 83 L---IRTIIGGAQIIDLMILVIDVQKG-KQTQTAECL-IIGELLC-----KKLVVVINKIDVLPENQR 140 (522)
T ss_pred H---HHHHHhhhheeeeeeEEEehhcc-cccccchhh-hhhhhhc-----cceEEEEeccccccchhh
Confidence 2 34445556668999999999876 333333322 2222221 368999999998876544
No 283
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.94 E-value=1.4e-08 Score=100.59 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
+++++|+++|+.|||||||+++|+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999754
No 284
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.92 E-value=5.6e-09 Score=111.61 Aligned_cols=88 Identities=27% Similarity=0.396 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCc----------------eEEEeecccccccch
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGR----------------KVLLSDTVGFISDLP 360 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~----------------~i~LiDTpG~i~~lp 360 (597)
..++|||.||+|||||+|+|++... .+.+++|+|++|..+.+.+++.+ .+.++|.||++....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5799999999999999999999998 88899999999999999887642 578999999986532
Q ss_pred h--hHHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007583 361 L--QLVDAFHATLEEVVEADLLVHVLDCTA 388 (597)
Q Consensus 361 ~--~lve~f~sTl~~l~~aDliL~VvDas~ 388 (597)
. .+...| +..++.+|+++||+|+..
T Consensus 83 ~g~Glgn~f---L~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQF---LANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHH---HHHHHhCCEEEEEEeCCC
Confidence 2 233344 677888999999999863
No 285
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=4.5e-09 Score=99.71 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=80.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC-----cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL-----FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATL 371 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v-----~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl 371 (597)
-..|.|+|.-|||||||+.++-.... ...+...+|....++++.+ ++..+.+||.-|+ +..++..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQ---------e~lrSlw 86 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQ---------ESLRSLW 86 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCCh---------HHHHHHH
Confidence 47899999999999999998753221 1122334455566777887 5889999999998 3344433
Q ss_pred H-HHHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 372 E-EVVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 372 ~-~l~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
. .+..|+++++|+|++++. .++.......++..-.+. ..|+++.+||-|+.+..
T Consensus 87 ~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le---g~p~L~lankqd~q~~~ 142 (197)
T KOG0076|consen 87 KKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLE---GAPVLVLANKQDLQNAM 142 (197)
T ss_pred HHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc---CCchhhhcchhhhhhhh
Confidence 3 455699999999999852 333333344444332222 24999999999987653
No 286
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.91 E-value=5e-10 Score=113.41 Aligned_cols=27 Identities=48% Similarity=0.610 Sum_probs=25.0
Q ss_pred cEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007583 539 PDVKISARTGVGLQELLEIIDERLKTL 565 (597)
Q Consensus 539 pvv~vSA~tG~Gi~eLL~~I~~~~~~~ 565 (597)
||+.+||.+|.||++|+++|+++.+..
T Consensus 206 pV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 206 PVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999987665
No 287
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.89 E-value=2e-08 Score=112.86 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=79.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccc-ccccceecCceeEEEecCCceEEEeecccccccc-hhhHHHHH-HHhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL-PLQLVDAF-HATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l-p~~lve~f-~sTl~~ 373 (597)
..+|+|+|.+|+|||||+|.|+|..+... .....|+......... +|..+.++||||+.... .......+ ......
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 36899999999999999999999875433 3334454443222233 78899999999997532 11112222 222222
Q ss_pred HH--hcCEEEEEEeCCCCChH-HHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VV--EADLLVHVLDCTAPNLE-EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~--~aDliL~VvDas~~~~~-~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+. .+|++|+|......... +....+..+-+-+| ...++.+|+|++..|.+.+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG--~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLG--PSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhC--HHhHcCEEEEEeCCccCCC
Confidence 22 47899998876533222 23333333333445 2334579999999999864
No 288
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.87 E-value=4.6e-09 Score=109.05 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=75.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC----------------ceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG----------------RKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g----------------~~i~LiDTpG~i~~l 359 (597)
....++|||.+|+|||||+|+|+.......+.+|+|++|....+..++. -.+.+.|.+|.+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 3479999999999999999999999989999999999999988887653 245799999998653
Q ss_pred --hhhHHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007583 360 --PLQLVDAFHATLEEVVEADLLVHVLDCTA 388 (597)
Q Consensus 360 --p~~lve~f~sTl~~l~~aDliL~VvDas~ 388 (597)
...+.+.| +.+++.+|.++||++++.
T Consensus 99 s~G~GLGN~F---Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKF---LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHH---HHhhhhccceeEEEEecC
Confidence 34566777 778888999999999854
No 289
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.84 E-value=1.6e-08 Score=93.56 Aligned_cols=116 Identities=23% Similarity=0.293 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccccccc-ceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLF-ATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f-~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
....|+|.+|+|||+|+.++.... +..++.. ...+..++.+.++ |. .+.+|||+|. +.|+. +-..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGq---------ErFrtitsty 77 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQ---------ERFRTITSTY 77 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecC-CcEEEEEEeecccH---------HHHHHHHHHH
Confidence 566889999999999999998764 3333332 2356777788774 44 5679999999 66754 4445
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
++..+.++.|.|++++ +....+..||+++.-... ..|-++|.||+|..+..
T Consensus 78 yrgthgv~vVYDVTn~---ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 78 YRGTHGVIVVYDVTNG---ESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred ccCCceEEEEEECcch---hhhHhHHHHHHHHHhcCc-cccceecccCCCCccce
Confidence 6778999999999976 445556667777643222 24789999999986543
No 290
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.83 E-value=8e-09 Score=107.69 Aligned_cols=129 Identities=22% Similarity=0.216 Sum_probs=97.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------cccccccceecCceeEEEec
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---------------------------------FSDARLFATLDPRLKSVVLP 342 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---------------------------------~~~~~~f~Tld~t~~~i~l~ 342 (597)
...++..+|...-|||||+-+|+.... ..+...+.|+|...+.+..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 457899999999999999999973210 1233445677776666655
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
..+++++.||||+.+ .-+.+......||++++++|+..+ ..+|..+..-+...+|+. .+++++|||
T Consensus 84 ~KRkFIiADTPGHeQ--------YTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLGIr-----hvvvAVNKm 149 (431)
T COG2895 84 EKRKFIIADTPGHEQ--------YTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLGIR-----HVVVAVNKM 149 (431)
T ss_pred ccceEEEecCCcHHH--------HhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhCCc-----EEEEEEeee
Confidence 678999999999932 235556667779999999999887 666777777788888984 589999999
Q ss_pred CCCCccccccccccccc
Q 007583 423 DYHDEEMGDVEYIDGDD 439 (597)
Q Consensus 423 Dl~~~~~~~~~~i~~~~ 439 (597)
||++-++...+++..++
T Consensus 150 DLvdy~e~~F~~I~~dy 166 (431)
T COG2895 150 DLVDYSEEVFEAIVADY 166 (431)
T ss_pred cccccCHHHHHHHHHHH
Confidence 99987766566666554
No 291
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.9e-08 Score=96.60 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHh-HHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHAT-LEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sT-l~~l~ 375 (597)
-..|.++|--||||||++..|--..+... ..|+...+..+.+ .+..+.+||.-|+.. ++.. .....
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~y-kn~~f~vWDvGGq~k---------~R~lW~~Y~~ 83 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEY-KNISFTVWDVGGQEK---------LRPLWKHYFQ 83 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEE-cceEEEEEecCCCcc---------cccchhhhcc
Confidence 47899999999999999999876553222 2344445556777 688999999999832 2221 22345
Q ss_pred hcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 376 EADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 376 ~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+.+++|+|.++.. ..+..+.+..+|..-. ....|++++.||.|+.++-
T Consensus 84 ~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~---l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDRERIEEAKEELHRMLAEPE---LRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc---cCCceEEEEechhhccccC
Confidence 689999999998752 2333444444444333 3446999999999987653
No 292
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=3.8e-08 Score=91.05 Aligned_cols=120 Identities=21% Similarity=0.203 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
..++.++|...+|||||+.+.++....+.-.....++..+..+.-.+ ..++.+|||.|+. .++ .|...+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqE---------ryrtiTTayy 91 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE---------RYRTITTAYY 91 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccch---------hhhHHHHHHh
Confidence 35899999999999999999998764332211122333333333212 2356899999993 332 366678
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+.|+.++++.|+++. +....+..+.-.+.-..-.+.|+|+|.||||+.++.
T Consensus 92 RgamgfiLmyDitNe---eSf~svqdw~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 92 RGAMGFILMYDITNE---ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred hccceEEEEEecCCH---HHHHHHHHHHHHheeeeccCceEEEEecccCCccce
Confidence 899999999999875 455566666666654333446999999999986643
No 293
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.81 E-value=2.7e-08 Score=89.87 Aligned_cols=104 Identities=25% Similarity=0.329 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
.++++||..|+|||||++.|.|.... --.+..+.+.+ -..+||||-....+.. +.+.+--...+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l---------ykKTQAve~~d---~~~IDTPGEy~~~~~~----Y~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL---------YKKTQAVEFND---KGDIDTPGEYFEHPRW----YHALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh---------hcccceeeccC---ccccCCchhhhhhhHH----HHHHHHHhhcc
Confidence 36899999999999999999998732 11222344422 2367999974332221 23333345569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
|++++|..+.++...- .-++.....+|+|-|++|+|+..+
T Consensus 66 dvi~~v~~and~~s~f----------~p~f~~~~~k~vIgvVTK~DLaed 105 (148)
T COG4917 66 DVIIYVHAANDPESRF----------PPGFLDIGVKKVIGVVTKADLAED 105 (148)
T ss_pred ceeeeeecccCccccC----------CcccccccccceEEEEecccccch
Confidence 9999998887762110 112223333689999999999753
No 294
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.77 E-value=3.1e-08 Score=100.57 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc---ccccccceecCceeEEEecCCceEEEeeccc-----ccccchhhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---SDARLFATLDPRLKSVVLPSGRKVLLSDTVG-----FISDLPLQLVDAF 367 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~---~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG-----~i~~lp~~lve~f 367 (597)
+.|.++++|.+|+|||+|+|.++..... .....+.| ..- -.+.-|..+.++|.|| +-..+|.++...-
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~i-n~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAI-NHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eee-eeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 4589999999999999999999875421 11111111 111 1122467889999999 4455677665555
Q ss_pred HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 368 HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 368 ~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..++.+-...=.+.+.+|++.+ .........+++.+.++ |+.+|+||||+...
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~-i~~~D~~~i~~~ge~~V------P~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVP-IQPTDNPEIAWLGENNV------PMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCC-CCCCChHHHHHHhhcCC------CeEEeeehhhhhhh
Confidence 5555555554456667898876 33333445588888887 99999999998654
No 295
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.76 E-value=2.7e-08 Score=92.07 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHH-HHHh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLE-EVVE 376 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~-~l~~ 376 (597)
..+.++|-.|||||||+|.+.... ..++ ...|.-...+.+.- ++..+.+||.+|+ ..|++..+ ..+.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~-~~ed-miptvGfnmrk~tk-gnvtiklwD~gGq---------~rfrsmWerycR~ 88 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQ-YLED-MIPTVGFNMRKVTK-GNVTIKLWDLGGQ---------PRFRSMWERYCRG 88 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeecc-chhh-hcccccceeEEecc-CceEEEEEecCCC---------ccHHHHHHHHhhc
Confidence 578999999999999999887533 1222 22333444555543 6678899999999 34665554 4567
Q ss_pred cCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 377 ADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 377 aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+++++||+|++++. .......+.+.|..-.+. ..|+++..||+|+.++
T Consensus 89 v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~---gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 89 VSAIVYVVDAADPDKLEASRSELHDLLDKPSLT---GIPLLVLGNKIDLPGA 137 (186)
T ss_pred CcEEEEEeecCCcccchhhHHHHHHHhcchhhc---CCcEEEecccccCccc
Confidence 99999999999863 344455566666654443 2599999999999765
No 296
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.76 E-value=8.5e-08 Score=102.73 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc-----ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF-----SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLE 372 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~-----~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~ 372 (597)
..|||+|.+|+|||||+|+|.|.... ..+..-+|..++ ....|.-..+.+||.||.-.... .....+.. -
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~gt~~f-~~~~Yl~~--~ 110 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIGTPNF-PPEEYLKE--V 110 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GGGSS---HHHHHHH--T
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCCCCCC-CHHHHHHH--c
Confidence 79999999999999999999874321 111112222332 33345666799999999854211 11112211 1
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
.+...|.++++.+- ......-.+...+...|. |+.+|.+|+|.
T Consensus 111 ~~~~yD~fiii~s~---rf~~ndv~La~~i~~~gK------~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 KFYRYDFFIIISSE---RFTENDVQLAKEIQRMGK------KFYFVRTKVDS 153 (376)
T ss_dssp TGGG-SEEEEEESS---S--HHHHHHHHHHHHTT-------EEEEEE--HHH
T ss_pred cccccCEEEEEeCC---CCchhhHHHHHHHHHcCC------cEEEEEecccc
Confidence 35568988776543 234455555667777774 89999999996
No 297
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.75 E-value=2.1e-07 Score=96.61 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
+...|.|+|++|||||||+++|.+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999988864
No 298
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.74 E-value=1.3e-07 Score=93.40 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=23.0
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHHHH
Q 007583 537 HAPDVKISARTGVGLQELLEIIDERL 562 (597)
Q Consensus 537 ~~pvv~vSA~tG~Gi~eLL~~I~~~~ 562 (597)
..|++++||+||.|+.+|++.|.+++
T Consensus 170 ~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 170 EKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998654
No 299
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.73 E-value=2.6e-08 Score=93.67 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
....++|.+-+|||+|++.++......-..+....|...+-+.+..|. ++.||||+|+ +.|++ |...+
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq---------erfrsitksyy 79 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ---------ERFRSITKSYY 79 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch---------HHHHHHHHHHh
Confidence 578899999999999999999765332222222233333344444554 4579999999 67766 77788
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcc-CCC-cEEEEEecCCCCCcccc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEE-KLK-NMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~-~~~-P~IiVlNKiDl~~~~~~ 430 (597)
+++=.+++|.|+++. +..+++..|+++..+... ..+ -+.+|..|+|+.+..+.
T Consensus 80 rnsvgvllvyditnr---~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV 134 (213)
T KOG0091|consen 80 RNSVGVLLVYDITNR---ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV 134 (213)
T ss_pred hcccceEEEEeccch---hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc
Confidence 888889999999875 445556666666433221 222 37889999999876654
No 300
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.70 E-value=4.1e-08 Score=99.17 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=80.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHh-HHHHHh
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHAT-LEEVVE 376 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sT-l~~l~~ 376 (597)
+|.++|+.||||||..+.+.+... .....+..|.++....+...+...+.+||.||+...... .+... -.-...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~----~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN----YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT----THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc----cccccHHHHHhc
Confidence 489999999999999999998653 334556788888877787767789999999999543211 11111 122466
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
+++++||+|+......+......+.+..+.-.. .+..+-++++|+|++.++..
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r 129 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDER 129 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHH
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHH
Confidence 899999999985556666666666655543211 12368999999999876543
No 301
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.65 E-value=4.5e-08 Score=89.10 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=72.9
Q ss_pred EEcCCCCCHHHHHHHHHcCCCcccccccce--ecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHHHHHh
Q 007583 302 VVGYTNAGKSTLVSALSDSDLFSDARLFAT--LDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVE 376 (597)
Q Consensus 302 LVG~tgAGKSTLlnaL~g~~v~~~~~~f~T--ld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~ 376 (597)
++|.+++|||.|+-+.-........ ...| ++....-+.. ++ .++.+|||+|+ +.|++ |...++.
T Consensus 2 llgds~~gktcllir~kdgafl~~~-fistvgid~rnkli~~-~~~kvklqiwdtagq---------erfrsvt~ayyrd 70 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN-FISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQ---------ERFRSVTHAYYRD 70 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc-eeeeeeeccccceecc-CCcEEEEEEeeccch---------HHHhhhhHhhhcc
Confidence 6899999999987654322211111 1111 1222222223 33 35689999999 67766 7778899
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
||.++++.|+.+..+.+..+.++..+.+.+... ..+.++.||||+..+
T Consensus 71 a~allllydiankasfdn~~~wlsei~ey~k~~---v~l~llgnk~d~a~e 118 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNCQAWLSEIHEYAKEA---VALMLLGNKCDLAHE 118 (192)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHHHHhh---HhHhhhccccccchh
Confidence 999999999988766666666666555555432 357899999998654
No 302
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.62 E-value=1.3e-07 Score=93.22 Aligned_cols=118 Identities=22% Similarity=0.167 Sum_probs=76.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
..+|+++|.+|+|||+|...+.+... +..+.++.-+.....+.+ ++. .+.++||+|+.. |.. .-..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~~---------~~~~~~~~ 71 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTV-DGEVCMLEILDTAGQEE---------FSAMRDLY 71 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEE-CCEEEEEEEEcCCCccc---------ChHHHHHh
Confidence 36899999999999999988887652 222222222333444555 343 456999999522 222 2234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|..++|+++++..+.+....+.+.+.... .....|+|+|.||+|+...
T Consensus 72 ~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~--~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRSSFEEAKQLREQILRVK--GRDDVPIILVGNKCDLERE 123 (196)
T ss_pred hccCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CcCCCCEEEEEEcccchhc
Confidence 667899999999998755555554444442221 1122599999999999764
No 303
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.7e-07 Score=88.56 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
...+.++|--|||||||++.|-.... .+...|+.|+...+.+ +|..+.-.|.-|+. .+-+.-...+..
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPTSE~l~I-g~m~ftt~DLGGH~--------qArr~wkdyf~~ 87 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSEELSI-GGMTFTTFDLGGHL--------QARRVWKDYFPQ 87 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccc---cccCCCcCCChHHhee-cCceEEEEccccHH--------HHHHHHHHHHhh
Confidence 46899999999999999999976542 2234588899988888 89999999999993 222334456677
Q ss_pred cCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 377 ADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 377 aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+|.+++.+|+-+.. ..+........|..-. ....|+++..||+|...+-
T Consensus 88 v~~iv~lvda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 88 VDAIVYLVDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYAA 137 (193)
T ss_pred hceeEeeeehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCcc
Confidence 99999999997652 2222333333332222 2335999999999998764
No 304
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=5.3e-08 Score=107.23 Aligned_cols=130 Identities=22% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC--C-----------------------------cccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD--L-----------------------------FSDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~--v-----------------------------~~~~~~f~Tld~t~~~i~l~~g 344 (597)
....++++|+.+||||||+-+|+-.. + ..+...+.|.+..+..+. ...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-s~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-SKS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-cCc
Confidence 45789999999999999999997321 0 122334445444444444 355
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCCh------HHHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL------EEHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~------~~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.|+|+||+-... ..++.....||++++|+|++.+.+ ..+......+|+.+|+. -+|++
T Consensus 255 ~~~tliDaPGhkdFi--------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~-----qliva 321 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFI--------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS-----QLIVA 321 (603)
T ss_pred eeEEEecCCCccccc--------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc-----eEEEE
Confidence 678899999973221 334555667999999999986533 34566677889999975 48999
Q ss_pred EecCCCCCccccccccccccc
Q 007583 419 WNKIDYHDEEMGDVEYIDGDD 439 (597)
Q Consensus 419 lNKiDl~~~~~~~~~~i~~~~ 439 (597)
+||+|+++-.+...++|...+
T Consensus 322 iNKmD~V~Wsq~RF~eIk~~l 342 (603)
T KOG0458|consen 322 INKMDLVSWSQDRFEEIKNKL 342 (603)
T ss_pred eecccccCccHHHHHHHHHHH
Confidence 999999986655455555444
No 305
>PTZ00099 rab6; Provisional
Probab=98.59 E-value=4.5e-07 Score=87.78 Aligned_cols=70 Identities=24% Similarity=0.154 Sum_probs=44.8
Q ss_pred ceEEEeecccccccchhhHHHHHHH-hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
..+.+|||+|+. .|.. .-..+..+|++++|+|++++...+....+...+.... ....|+|+|.||+|
T Consensus 29 v~l~iwDt~G~e---------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~---~~~~piilVgNK~D 96 (176)
T PTZ00099 29 VRLQLWDTAGQE---------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER---GKDVIIALVGNKTD 96 (176)
T ss_pred EEEEEEECCChH---------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEECcc
Confidence 467899999983 2322 2334678999999999988643333333333222221 12358999999999
Q ss_pred CCC
Q 007583 424 YHD 426 (597)
Q Consensus 424 l~~ 426 (597)
+..
T Consensus 97 L~~ 99 (176)
T PTZ00099 97 LGD 99 (176)
T ss_pred ccc
Confidence 853
No 306
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.57 E-value=1e-07 Score=100.27 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---------cc-----cccccceecCceeEEEecCC-----------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---------FS-----DARLFATLDPRLKSVVLPSG----------------- 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---------~~-----~~~~f~Tld~t~~~i~l~~g----------------- 344 (597)
....|+..|+.++|||||+-+|+-... +. +-..+-|.+.+.+-+-+.+|
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 457899999999999999988862211 00 00111122222222222221
Q ss_pred -----ceEEEeecccccccchhhHHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEE
Q 007583 345 -----RKVLLSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIE 417 (597)
Q Consensus 345 -----~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~Ii 417 (597)
+-+.++||.|+.. ..+.|++.+. ..|..++|+-+.++.. .....-+-++-.+++ |+|+
T Consensus 196 v~~aDklVsfVDtvGHEp--------wLrTtirGL~gqk~dYglLvVaAddG~~-~~tkEHLgi~~a~~l------PviV 260 (527)
T COG5258 196 VKRADKLVSFVDTVGHEP--------WLRTTIRGLLGQKVDYGLLVVAADDGVT-KMTKEHLGIALAMEL------PVIV 260 (527)
T ss_pred hhhcccEEEEEecCCccH--------HHHHHHHHHhccccceEEEEEEccCCcc-hhhhHhhhhhhhhcC------CEEE
Confidence 3356899999932 2466776664 4788999999988743 333444456666666 9999
Q ss_pred EEecCCCCCccc
Q 007583 418 VWNKIDYHDEEM 429 (597)
Q Consensus 418 VlNKiDl~~~~~ 429 (597)
|++|||+.+++.
T Consensus 261 vvTK~D~~~ddr 272 (527)
T COG5258 261 VVTKIDMVPDDR 272 (527)
T ss_pred EEEecccCcHHH
Confidence 999999987753
No 307
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.5e-07 Score=95.09 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC----------------CcccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD----------------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~----------------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+-+|+...|||||-.+|+... .+.+...+.|+....-.... ..+.+--+|.||+.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHA--- 128 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHA--- 128 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchH---
Confidence 45789999999999999999998421 12344455665544333333 45677889999993
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
...+...-.....|.+++||.++++.+.+..+++ -+.+++|+. .+++.+||.|++++.+
T Consensus 129 -----DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl-LLArQVGV~-----~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 129 -----DYIKNMITGAAQMDGAILVVAATDGPMPQTREHL-LLARQVGVK-----HIVVFINKVDLVDDPE 187 (449)
T ss_pred -----HHHHHhhcCccccCceEEEEEcCCCCCcchHHHH-HHHHHcCCc-----eEEEEEecccccCCHH
Confidence 3456666777789999999999998665555554 567889984 5899999999996543
No 308
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=1.7e-07 Score=103.90 Aligned_cols=116 Identities=20% Similarity=0.225 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-----------------ccccccceecCceeEEEecC--Cc--eEEEeeccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-----------------SDARLFATLDPRLKSVVLPS--GR--KVLLSDTVG 354 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-----------------~~~~~f~Tld~t~~~i~l~~--g~--~i~LiDTpG 354 (597)
.+++|+++|+-.+|||+|+..|.+.... .+...+.++..+--.+.+.+ +. -+.++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4689999999999999999999876531 11122233222222233222 22 357999999
Q ss_pred ccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 355 FISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 355 ~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++. ....+...++.+|++++|+|+..+.+. +.+.+....-+-. .|+++|+||+|++-
T Consensus 207 HVn--------F~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq~~------~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 207 HVN--------FSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQNR------LPIVVVINKVDRLI 263 (971)
T ss_pred ccc--------chHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHhcc------CcEEEEEehhHHHH
Confidence 953 223345567789999999999887433 3333222221212 38999999999853
No 309
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=4.9e-07 Score=83.06 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=84.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
-++...|+|..|+|||.|+..++........+........++.+.. .|. ++.+|||+|+ +.|+. |..
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagq---------erfravtrs 79 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQ---------ERFRAVTRS 79 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccH---------HHHHHHHHH
Confidence 4678899999999999999999876543333222233444555555 444 5579999999 66755 667
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
.++.+-..++|.|++.. .....+..||....-....+.-++++.||.|+......
T Consensus 80 yyrgaagalmvyditrr---stynhlsswl~dar~ltnpnt~i~lignkadle~qrdv 134 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRR---STYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDV 134 (215)
T ss_pred HhccccceeEEEEehhh---hhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccC
Confidence 78888899999999864 34555666766653323333457889999999765443
No 310
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.46 E-value=5.5e-07 Score=85.69 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc-----cccccc-ceec------CceeEEEec-----------------------
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF-----SDARLF-ATLD------PRLKSVVLP----------------------- 342 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~-----~~~~~f-~Tld------~t~~~i~l~----------------------- 342 (597)
|.+.++|+.|||||||++.+...... .....+ ...+ .....+.+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 57899999999999999999865210 000000 0000 001111111
Q ss_pred ----CCceEEEeecccccccchhhHHHHH--HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEE
Q 007583 343 ----SGRKVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI 416 (597)
Q Consensus 343 ----~g~~i~LiDTpG~i~~lp~~lve~f--~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~I 416 (597)
...+.+++||+|... |..+.+.+ ...+.....+|.+++|+|+... .........+..++... -+
T Consensus 81 ~~~~~~~d~I~IEt~G~~~--p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~--~~~~~~~~~~~~Qi~~a------d~ 150 (158)
T cd03112 81 DAGKIAFDRIVIETTGLAD--PGPVAQTFFMDEELAERYLLDGVITLVDAKHA--NQHLDQQTEAQSQIAFA------DR 150 (158)
T ss_pred HhccCCCCEEEEECCCcCC--HHHHHHHHhhchhhhcceeeccEEEEEEhhHh--HHHhhccHHHHHHHHHC------CE
Confidence 234668999999965 34444443 2234455678999999998653 22221122233444443 27
Q ss_pred EEEecCCC
Q 007583 417 EVWNKIDY 424 (597)
Q Consensus 417 iVlNKiDl 424 (597)
+|+||+|+
T Consensus 151 ivlnk~dl 158 (158)
T cd03112 151 ILLNKTDL 158 (158)
T ss_pred EEEecccC
Confidence 89999996
No 311
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.39 E-value=5.6e-07 Score=85.01 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGF 355 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~ 355 (597)
..|+++|.+|+|||||+|+|.+... .....+++|... ..++.+..+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~----~~~~~~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW----QYITLMKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE----EEEEcCCCEEEEECcCC
Confidence 6889999999999999999999764 334444444332 22223456899999995
No 312
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.39 E-value=8.5e-07 Score=85.75 Aligned_cols=56 Identities=38% Similarity=0.415 Sum_probs=41.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGF 355 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~ 355 (597)
+...++++|++|+|||||+|+|++... .+...++.|.... .+.+ +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~--~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHL--DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEe--CCCEEEEECcCC
Confidence 357899999999999999999999775 4455555554432 2222 356899999995
No 313
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.39 E-value=3.7e-06 Score=78.58 Aligned_cols=124 Identities=21% Similarity=0.245 Sum_probs=83.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccccccccee-cCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL-DPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tl-d~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
.-.|+++|.-++|||+++..|+-.+..+......|+ |.....+..+.| ..+.|.||.|.-.. +..+.. ..
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~eLpr------hy 81 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQELPR------HY 81 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hhhhhH------hH
Confidence 468999999999999999998855544444344443 344455555444 35789999998543 333332 23
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
+..+|..++|.+..++.+....+-+...++.. .+++..|+++..||+|+.++.+
T Consensus 82 ~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~--KdKKEvpiVVLaN~rdr~~p~~ 135 (198)
T KOG3883|consen 82 FQFADAFVLVYSPMDPESFQRVELLKKEIDKH--KDKKEVPIVVLANKRDRAEPRE 135 (198)
T ss_pred hccCceEEEEecCCCHHHHHHHHHHHHHHhhc--cccccccEEEEechhhcccchh
Confidence 45599999999988875555555555555552 2344569999999999975543
No 314
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=1.2e-06 Score=82.15 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=71.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec----C----C--ceEEEeecccccccchhhHHHHHH
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP----S----G--RKVLLSDTVGFISDLPLQLVDAFH 368 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~----~----g--~~i~LiDTpG~i~~lp~~lve~f~ 368 (597)
....+|.+|+||||++-..+.......-.....++.....+.+. + + ..+.+|||+|+ +.|+
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ---------ERFR 81 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ---------ERFR 81 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH---------HHHH
Confidence 44568999999999998887654211100001122222223221 1 1 23579999999 6675
Q ss_pred H-hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcc-CCCcEEEEEecCCCCCcc
Q 007583 369 A-TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEE-KLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 369 s-Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~-~~~P~IiVlNKiDl~~~~ 428 (597)
+ |....+.|-..++++|.++. +..-.+.+||.++....- .+.-+|++.||+|+.+..
T Consensus 82 SLTTAFfRDAMGFlLiFDlT~e---qSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R 140 (219)
T KOG0081|consen 82 SLTTAFFRDAMGFLLIFDLTSE---QSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR 140 (219)
T ss_pred HHHHHHHHhhccceEEEeccch---HHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh
Confidence 5 55667778888999999865 344455566666543211 112489999999986543
No 315
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.34 E-value=2.2e-06 Score=88.83 Aligned_cols=59 Identities=27% Similarity=0.281 Sum_probs=44.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
....++++|++|+|||||+|+|++... .+...++.|..++ .+.+ +..+.++||||++..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~--~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKL--SDGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEe--CCCEEEEECCCcccC
Confidence 347899999999999999999998763 4455566665543 3333 346899999999654
No 316
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=3.9e-06 Score=77.42 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHH-HHHh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLE-EVVE 376 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~-~l~~ 376 (597)
..|..+|-.+|||||++..|.-..... ...|+-..+..+.+ .+..+.+||.-|. ..++...+ .+..
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVty-kN~kfNvwdvGGq---------d~iRplWrhYy~g 84 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTY-KNVKFNVWDVGGQ---------DKIRPLWRHYYTG 84 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEe-eeeEEeeeeccCc---------hhhhHHHHhhccC
Confidence 578889999999999999997654111 11233344555666 6778899999998 22222222 3445
Q ss_pred cCEEEEEEeCCCC-ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 377 ADLLVHVLDCTAP-NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 377 aDliL~VvDas~~-~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
...+++|+|+.+. ..++....+..++..-.+ ...|+++..||-|+.++.
T Consensus 85 tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em---~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 85 TQGLIFVVDSADRDRIEEARNELHRIINDREM---RDAIILILANKQDLPDAM 134 (180)
T ss_pred CceEEEEEeccchhhHHHHHHHHHHHhCCHhh---hcceEEEEecCccccccc
Confidence 7789999998754 244444555555544333 335899999999998764
No 317
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.34 E-value=2.9e-06 Score=88.33 Aligned_cols=125 Identities=25% Similarity=0.315 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccccc--------ccceecCceeEEEec-CCc--eEEEeecccccccchh-----
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDAR--------LFATLDPRLKSVVLP-SGR--KVLLSDTVGFISDLPL----- 361 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~--------~f~Tld~t~~~i~l~-~g~--~i~LiDTpG~i~~lp~----- 361 (597)
.+|.|+|.+|+|||||+|.|.+..+..... ...|+........+. ++. .+.++|||||-..+..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 789999999999999999999977533321 111122222222222 333 4579999998644322
Q ss_pred ----hHHHHHHHhHHHH----------HhcCEEEEEEeCCCCCh-HHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 362 ----QLVDAFHATLEEV----------VEADLLVHVLDCTAPNL-EEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 362 ----~lve~f~sTl~~l----------~~aDliL~VvDas~~~~-~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+...|...+.+- ...|++||.++.+.... .... +.|+.+.-. .++|-|+.|+|...
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls~~----vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLSKR----VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHTTT----SEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhccc----ccEEeEEecccccC
Confidence 1122233333211 12478899998764322 2222 455555432 37899999999998
Q ss_pred cccc
Q 007583 427 EEMG 430 (597)
Q Consensus 427 ~~~~ 430 (597)
+++.
T Consensus 157 ~~el 160 (281)
T PF00735_consen 157 PEEL 160 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 318
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.33 E-value=2.4e-06 Score=78.88 Aligned_cols=118 Identities=23% Similarity=0.226 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
-.++.++|--||||||+++.|.+.++.- +..|--..+..+...+...+.+||.-|...--| .+. ..+.+
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~~h---ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRp-----yWs---NYyen 85 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDPRH---LTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRP-----YWS---NYYEN 85 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCChhh---ccccCCcceEEEeecCcEEEEEEecCCccccch-----hhh---hhhhc
Confidence 3789999999999999999999987311 111223334455554447889999998843322 222 23456
Q ss_pred cCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 377 ADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 377 aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.|.++||+|.++.. +++.-+...+.+++..+.. .|+.+..||-|++.+.
T Consensus 86 vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~---vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 86 VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE---VPVLIFANKQDLLTAA 135 (185)
T ss_pred cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc---cceeehhhhhHHHhhc
Confidence 89999999976642 3444455556666655543 4999999999987653
No 319
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.32 E-value=9e-06 Score=81.86 Aligned_cols=92 Identities=24% Similarity=0.076 Sum_probs=56.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcC--CCccccc-ccceecCceeEEEec--CCceEEEeecccccccchhhHHHHHHH
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDS--DLFSDAR-LFATLDPRLKSVVLP--SGRKVLLSDTVGFISDLPLQLVDAFHA 369 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~--~v~~~~~-~f~Tld~t~~~i~l~--~g~~i~LiDTpG~i~~lp~~lve~f~s 369 (597)
.++.+|+|+|++++|||||+|.|+|. ...+... ..+|........... .+..++++||+|+...-... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--FEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc--hhhhh
Confidence 46789999999999999999999998 3322221 222322222222221 35789999999996432211 01222
Q ss_pred hHHHHH--hcCEEEEEEeCCC
Q 007583 370 TLEEVV--EADLLVHVLDCTA 388 (597)
Q Consensus 370 Tl~~l~--~aDliL~VvDas~ 388 (597)
.+..+. .++++++.++...
T Consensus 83 ~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcc
Confidence 223333 3899999887653
No 320
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.32 E-value=3.6e-06 Score=87.79 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=45.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
...+++++|++|+|||||+|+|++... .+...++.|.... .+.+ +..+.++||||+...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~--~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKL--GKGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEe--CCcEEEEECCCcCCC
Confidence 347899999999999999999999775 5556666665543 2333 456899999999643
No 321
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.30 E-value=5.2e-07 Score=86.10 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=77.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
...++|+|..++||||++++.+..-...........+...+.+.+. ....+.+|||.|+ +.|. .|-..+
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagq---------eEfDaItkAyy 90 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQ---------EEFDAITKAYY 90 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccc---------hhHHHHHHHHh
Confidence 4789999999999999999999643211111111223333333331 2345579999999 4443 355677
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
+.|...++|+..++.. ..+.+.+|-.++.... ...|.++|-||||++++...
T Consensus 91 rgaqa~vLVFSTTDr~---SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~ 142 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY---SFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQM 142 (246)
T ss_pred ccccceEEEEecccHH---HHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhc
Confidence 8888899999877653 3444445544442211 12499999999999987654
No 322
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.28 E-value=3.6e-06 Score=79.41 Aligned_cols=56 Identities=34% Similarity=0.353 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGF 355 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~ 355 (597)
+...++++|++|+|||||+|+|++... .+...+++|.+... +.+ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKL--DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEe--cCCEEEEECCCC
Confidence 357899999999999999999999763 34444566655543 222 356899999996
No 323
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.27 E-value=5.5e-06 Score=80.84 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.6
Q ss_pred CCCcEEEccCCCCCCHHHHHHHHHHHH
Q 007583 536 QHAPDVKISARTGVGLQELLEIIDERL 562 (597)
Q Consensus 536 ~~~pvv~vSA~tG~Gi~eLL~~I~~~~ 562 (597)
...|++.+|++||.|++++++.|...+
T Consensus 174 p~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 174 PEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 457899999999999999999987654
No 324
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=1.1e-06 Score=81.36 Aligned_cols=115 Identities=18% Similarity=0.273 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
-++.++|--|+||||++-+|--.++.... .|.......+.+ .+.++.+||.-|.-+- ...++. .+.+.
T Consensus 19 ~rililgldGaGkttIlyrlqvgevvttk---Ptigfnve~v~y-KNLk~~vwdLggqtSi-----rPyWRc---Yy~dt 86 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVVTTK---PTIGFNVETVPY-KNLKFQVWDLGGQTSI-----RPYWRC---YYADT 86 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCcccccC---CCCCcCcccccc-ccccceeeEccCcccc-----cHHHHH---Hhccc
Confidence 57889999999999998777543321111 111222334444 6778899999887332 122332 34568
Q ss_pred CEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 378 DLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 378 DliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
|.+++|||.++.. .......+..+|.+-.+.+ ..+++++||.|....
T Consensus 87 ~avIyVVDssd~dris~a~~el~~mL~E~eLq~---a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 87 DAVIYVVDSSDRDRISIAGVELYSMLQEEELQH---AKLLVFANKQDYSGA 134 (182)
T ss_pred ceEEEEEeccchhhhhhhHHHHHHHhccHhhcC---ceEEEEeccccchhh
Confidence 9999999988752 1222233445555544433 368999999997543
No 325
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=2.5e-06 Score=93.23 Aligned_cols=145 Identities=21% Similarity=0.188 Sum_probs=93.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHH
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLE 372 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~ 372 (597)
..+.+||+||++|+|||||++.|.... .-.|++...+.+.+..| .++.+...|.- ..+.+.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~------tk~ti~~i~GPiTvvsgK~RRiTflEcp~D-----------l~~miD 129 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF------TKQTIDEIRGPITVVSGKTRRITFLECPSD-----------LHQMID 129 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH------HHhhhhccCCceEEeecceeEEEEEeChHH-----------HHHHHh
Confidence 345678899999999999999998754 12233444444444333 45667766632 222344
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccccccccccccc-ccccccccccCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGDVEYIDGDD-ISNFSRAEDKDT 451 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~~~~~i~~~~-~~~~~sa~~~~g 451 (597)
-..-||++++.+|..-+. +-..-..+.+|...|++ .++-|++..|+...... +.++..++ ..+|+....+..
T Consensus 130 vaKIaDLVlLlIdgnfGf-EMETmEFLnil~~HGmP-----rvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaK 202 (1077)
T COG5192 130 VAKIADLVLLLIDGNFGF-EMETMEFLNILISHGMP-----RVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAK 202 (1077)
T ss_pred HHHhhheeEEEeccccCc-eehHHHHHHHHhhcCCC-----ceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCce
Confidence 456699999999987763 33334455788888873 47889999999765433 34444444 456666666666
Q ss_pred CCcccccccccC
Q 007583 452 TSEPVDVECIDN 463 (597)
Q Consensus 452 i~eL~~~~~~~~ 463 (597)
+-.|+++.++.+
T Consensus 203 lFylsgV~nGRY 214 (1077)
T COG5192 203 LFYLSGVENGRY 214 (1077)
T ss_pred EEEecccccCCC
Confidence 666655555444
No 326
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.22 E-value=1.3e-06 Score=83.55 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc----ccccccceecCc--eeEEEecCCceEEEeecccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF----SDARLFATLDPR--LKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~----~~~~~f~Tld~t--~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
.+++++|++|+|||||+|+|.+.... +.........+| ..-+.++ ....++|||||.+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~--~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP--DGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET--TSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC--CCcEEEECCCCCc
Confidence 69999999999999999999997421 111111111111 2223332 3468999999954
No 327
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.21 E-value=1.2e-06 Score=85.39 Aligned_cols=54 Identities=43% Similarity=0.377 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC---------cccccccceecCceeEEEecCCceEEEeecccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL---------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGF 355 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v---------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~ 355 (597)
..++++|.+|+|||||+|+|.+... .+...+++|.++... .+ +..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~--~~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKI--PL--GNGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEE--ec--CCCCEEEeCcCC
Confidence 4799999999999999999998542 334555666655432 22 225799999996
No 328
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.17 E-value=2.8e-06 Score=78.89 Aligned_cols=54 Identities=31% Similarity=0.476 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeeccccc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFI 356 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i 356 (597)
.++++|.+|+|||||+|+|++.... ....++.|... ..+.+ + ..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHF--QTIFL-T-PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccce--EEEEe-C-CCEEEEECCCcC
Confidence 7999999999999999999997743 33333334332 23333 2 367999999984
No 329
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.14 E-value=9.5e-06 Score=77.84 Aligned_cols=55 Identities=27% Similarity=0.299 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGF 355 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~ 355 (597)
.+.++++|.+|+|||||+|+|++... .....+++|..... +.+ ...+.++||||+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~--~~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKI--SPGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEe--cCCEEEEECCCC
Confidence 47899999999999999999998764 33444556655433 233 156889999997
No 330
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=6e-06 Score=93.40 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecC-------ceeEEEe--------cCCceEEEeecccccccc
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDP-------RLKSVVL--------PSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~-------t~~~i~l--------~~g~~i~LiDTpG~i~~l 359 (597)
.++++++++-|...|||||...|...+..+...+..+++. ..+.+.. ..+..++++|+||+++.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf- 85 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF- 85 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch-
Confidence 4789999999999999999999987664333333322211 1222221 24567899999999652
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
... ...+.+.+|.++..+|+..+. ..++..+..-.-.-++ .+|+|+||||++-
T Consensus 86 ----~se---vssas~l~d~alvlvdvvegv-~~qt~~vlrq~~~~~~------~~~lvinkidrl~ 138 (887)
T KOG0467|consen 86 ----SSE---VSSASRLSDGALVLVDVVEGV-CSQTYAVLRQAWIEGL------KPILVINKIDRLI 138 (887)
T ss_pred ----hhh---hhhhhhhcCCcEEEEeecccc-chhHHHHHHHHHHccC------ceEEEEehhhhHH
Confidence 111 123455699999999998874 4455444442222232 5799999999643
No 331
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.09 E-value=7.7e-06 Score=86.78 Aligned_cols=57 Identities=33% Similarity=0.381 Sum_probs=41.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
...|.+||+||+|||||+|+|++... .++..++.|..-. .+. -...+.|+||||++-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~--~~~~i~LlDtPGii~ 189 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIK--LDDGIYLLDTPGIIP 189 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEE--cCCCeEEecCCCcCC
Confidence 36799999999999999999999875 3444444443322 233 344589999999964
No 332
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=3.7e-05 Score=81.09 Aligned_cols=130 Identities=21% Similarity=0.262 Sum_probs=76.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCccccc-ccceecCceeEEE------ecCC-----------------------
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDAR-LFATLDPRLKSVV------LPSG----------------------- 344 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~-~f~Tld~t~~~i~------l~~g----------------------- 344 (597)
...|.|.++|.-..||||++|.|+..+...... +-.|++....... ++++
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 356999999999999999999999876421000 0001111000000 0000
Q ss_pred -----------ceEEEeecccccccchhhHHH--HHHHhHHH-HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcc
Q 007583 345 -----------RKVLLSDTVGFISDLPLQLVD--AFHATLEE-VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEE 410 (597)
Q Consensus 345 -----------~~i~LiDTpG~i~~lp~~lve--~f~sTl~~-l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~ 410 (597)
..+.++||||+.+.--+.... .|...++. +..+|.|++++|+..-+.......+...|+... +
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E--d- 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE--D- 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc--c-
Confidence 356899999997543221111 13333332 346999999999865545555555555444322 1
Q ss_pred CCCcEEEEEecCCCCCcccc
Q 007583 411 KLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 411 ~~~P~IiVlNKiDl~~~~~~ 430 (597)
.+=+|+||+|.++.++.
T Consensus 213 ---kiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 213 ---KIRVVLNKADQVDTQQL 229 (532)
T ss_pred ---eeEEEeccccccCHHHH
Confidence 46789999999988764
No 333
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.08 E-value=7.7e-06 Score=84.95 Aligned_cols=100 Identities=56% Similarity=0.691 Sum_probs=76.9
Q ss_pred CChHHHHHHHHhcCCCccc------hhh----hHHHHHHhhccchHHHHHHHHHhhhhcccccccccCCCCCcccccCch
Q 007583 160 LSGIQQRNLERAWGKPVLD------RVG----LIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGE 229 (597)
Q Consensus 160 Lsp~Q~~nle~~~~~~V~D------R~~----lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~ 229 (597)
+...|++|+...|-++|.| +.+ ||..||++||.+..++.|.++|-++|++.|+.+.+...+..+++.+++
T Consensus 15 vdtl~~~nvv~t~~kpv~~~rk~~~gsGn~e~Li~~i~aa~at~~f~nv~a~~a~~~~ek~r~~~VrvfDr~~~vl~if~ 94 (410)
T KOG0410|consen 15 VDTLQQRNVVRTWAKPVLDNRKTYIGSGNVEELIIEIFAAHATTKFANVQAELAALMYEKSRLVRVRVFDRRHTVLQIFE 94 (410)
T ss_pred HHhhccchhhhheeeeccCCcceeeecCcHHHHHHHHhcCccceeeecccccchhHHHHHhhhcceeeecchhhHHHHHH
Confidence 3567999999999999999 777 999999999999999999999999999999988766555444444455
Q ss_pred hhhhhhccCC---CCCCCccCCCChhHHHHHHH
Q 007583 230 AEVVSARGRG---SGGRGFISGAGETELQLQRR 259 (597)
Q Consensus 230 ~e~~~~~~~~---~g~~g~~~g~ge~~~e~~rr 259 (597)
++..+.+.+- ..++++.+|-+++.+...+|
T Consensus 95 q~a~T~earlqvalAempy~~~rl~r~~~hl~r 127 (410)
T KOG0410|consen 95 QEAVTAEARLQVALAEMPYVGGRLERELQHLRR 127 (410)
T ss_pred HHhhhHHHHHhhhhhcCccccchHHHHHHHHHh
Confidence 5555444331 12345666778888777766
No 334
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.04 E-value=1.1e-05 Score=85.44 Aligned_cols=121 Identities=25% Similarity=0.319 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC--------------ccc-ccccceecCceeEEEec-------------------
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL--------------FSD-ARLFATLDPRLKSVVLP------------------- 342 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v--------------~~~-~~~f~Tld~t~~~i~l~------------------- 342 (597)
+|+..|.|+-|||||||+|.|+.... .+. +.... +.......+.
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~--~~~e~~~El~nGCICCT~r~dl~~~~~~L 78 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLS--DTGEEVVELTNGCICCTVRDDLLPALERL 78 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccc--cCCccEEEeCCceEEEeccchhHHHHHHH
Confidence 47899999999999999999986431 111 01111 1111112222
Q ss_pred ----CCceEEEeecccccccchhhHHHHHHH--hHHHHHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcE
Q 007583 343 ----SGRKVLLSDTVGFISDLPLQLVDAFHA--TLEEVVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNM 415 (597)
Q Consensus 343 ----~g~~i~LiDTpG~i~~lp~~lve~f~s--Tl~~l~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~ 415 (597)
++.+.+++.|.|...+.|. ...|.. .+......|.++-|||+.+. ..... ......+++...+
T Consensus 79 ~~~~~~~D~ivIEtTGlA~P~pv--~~t~~~~~~l~~~~~ld~vvtvVDa~~~--~~~~~~~~~~~~~Qia~AD------ 148 (323)
T COG0523 79 LRRRDRPDRLVIETTGLADPAPV--IQTFLTDPELADGVRLDGVVTVVDAAHF--LEGLDAIAELAEDQLAFAD------ 148 (323)
T ss_pred HhccCCCCEEEEeCCCCCCCHHH--HHHhccccccccceeeceEEEEEeHHHh--hhhHHHHHHHHHHHHHhCc------
Confidence 2245688999998664443 334422 33344557889999999864 22222 2233444555533
Q ss_pred EEEEecCCCCCccc
Q 007583 416 IEVWNKIDYHDEEM 429 (597)
Q Consensus 416 IiVlNKiDl~~~~~ 429 (597)
++|+||+|++++..
T Consensus 149 ~ivlNK~Dlv~~~~ 162 (323)
T COG0523 149 VIVLNKTDLVDAEE 162 (323)
T ss_pred EEEEecccCCCHHH
Confidence 89999999999774
No 335
>PRK12288 GTPase RsgA; Reviewed
Probab=98.03 E-value=8.1e-06 Score=87.41 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccc----cceecCcee--EEEecCCceEEEeecccccc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARL----FATLDPRLK--SVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~----f~Tld~t~~--~i~l~~g~~i~LiDTpG~i~ 357 (597)
+++|+|++|+|||||+|+|++......... .....+|.. -+.++.| ..++|||||.+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~--~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG--GDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC--CEEEECCCCCc
Confidence 579999999999999999998763221111 111112222 2233333 35999999964
No 336
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.03 E-value=2.7e-05 Score=86.28 Aligned_cols=121 Identities=19% Similarity=0.188 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccccc---ccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDAR---LFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~---~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
..+|+|+|.-|+|||||+-+|+......+-+ +..++. .-..|+..+..++||..-.. + -.....+
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~----~----~~~l~~E 76 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSD----D----RLCLRKE 76 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccc----h----hHHHHHH
Confidence 4789999999999999999999876322111 111111 11224566788999874321 1 1123567
Q ss_pred HHhcCEEEEEEeCCCCCh-HHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 374 VVEADLLVHVLDCTAPNL-EEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~-~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
++.||++.+|...+++.+ ......|+-.+++..-. ....|+|+|.||+|.......
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~-~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGD-YHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCC-CccCCEEEEeeccCCcccccc
Confidence 788999999998887533 23334455556655411 123599999999999876544
No 337
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.02 E-value=8.8e-06 Score=83.05 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccc--------ccceecCceeEEEecCCceEEEeecccccc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDAR--------LFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~--------~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
.++++|++|+|||||+|+|.+........ ..+|.... .+.+ + ...++||||+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~--l~~l-~--~~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVE--LFHF-H--GGLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceE--EEEc-C--CcEEEeCCCccc
Confidence 78999999999999999999865321111 11222222 1222 2 237999999965
No 338
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.02 E-value=1.6e-05 Score=74.68 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=31.9
Q ss_pred HHHHH-hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 371 LEEVV-EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 371 l~~l~-~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++.+. .+|++++|+|++++..... ..+...+...+ +|+++|+||+|+.+
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~~~------~p~iiv~NK~Dl~~ 55 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRS-RKLERYVLELG------KKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHhCC------CcEEEEEEhHHhCC
Confidence 34444 4999999999987633222 23333333333 49999999999853
No 339
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.00 E-value=3.1e-05 Score=95.05 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccccccc----ceecCceeEEEecCCceEEEeecccccccch---h---hHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLF----ATLDPRLKSVVLPSGRKVLLSDTVGFISDLP---L---QLVD 365 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f----~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp---~---~lve 365 (597)
..|-..|+|++||||||||+.- |...+..+... .+... ++.+.+.-..+.+++||+|.+-.-+ . ..-.
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~-t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGG-TRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCC-CcccceEecCCEEEEcCCCccccCCCcccccHHHHH
Confidence 5799999999999999999987 54433222110 01111 1223332345778999999653211 1 1122
Q ss_pred HHHHhHHHH---HhcCEEEEEEeCCCC---ChH-------HHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 366 AFHATLEEV---VEADLLVHVLDCTAP---NLE-------EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 366 ~f~sTl~~l---~~aDliL~VvDas~~---~~~-------~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.|-..+... .-.+.||+++|+.+- ... .....+.++.+.+|+. -|+.+|++|||++..-
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~----~PVYvv~Tk~Dll~GF 259 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR----FPVYLVLTKADLLAGF 259 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC----CCEEEEEecchhhcCH
Confidence 232333333 347899999998542 111 2234445556666764 3999999999998653
No 340
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.00 E-value=4.5e-05 Score=75.32 Aligned_cols=119 Identities=23% Similarity=0.277 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCc----------------eeEEEe------------------c
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPR----------------LKSVVL------------------P 342 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t----------------~~~i~l------------------~ 342 (597)
.+|++||++|+||||.+-.|...... .......|.|.. +..... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 58999999999999999888742210 111111222210 000000 1
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
++.+++++||||.-...+. ..+.+...+ .....+-+++|++++.. .+....+....+.+++. =++++|.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~-~~~el~~~~-~~~~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~-------~lIlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEE-LLEELKKLL-EALNPDEVHLVLSATMG--QEDLEQALAFYEAFGID-------GLILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHH-HHHHHHHHH-HHHSSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTC-------EEEEEST
T ss_pred cCCCEEEEecCCcchhhHH-HHHHHHHHh-hhcCCccceEEEecccC--hHHHHHHHHHhhcccCc-------eEEEEee
Confidence 3457899999998543222 223333333 33367788999998864 34555666666666653 3669999
Q ss_pred CCCCc
Q 007583 423 DYHDE 427 (597)
Q Consensus 423 Dl~~~ 427 (597)
|-...
T Consensus 151 Det~~ 155 (196)
T PF00448_consen 151 DETAR 155 (196)
T ss_dssp TSSST
T ss_pred cCCCC
Confidence 97554
No 341
>PRK12289 GTPase RsgA; Reviewed
Probab=97.99 E-value=7.3e-06 Score=87.86 Aligned_cols=55 Identities=31% Similarity=0.341 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc-ccccc-------ceecCceeEEEecCCceEEEeecccccc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFS-DARLF-------ATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f-------~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
+++|+|++|+|||||+|+|++..... ..... +|... .-+.+++| ..|+|||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~--~l~~l~~g--~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV--ELFELPNG--GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee--EEEECCCC--cEEEeCCCccc
Confidence 58999999999999999999865322 11111 22222 12223333 37999999964
No 342
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.97 E-value=5.9e-05 Score=78.24 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=67.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccc-ccccceecC----------------ceeEEE------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATLDP----------------RLKSVV------------------ 340 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-~~~f~Tld~----------------t~~~i~------------------ 340 (597)
+..+|+++|++|+||||++..|+....... .....+.|+ ....+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 357999999999999999888874210000 000000010 000000
Q ss_pred ecCCceEEEeecccccccchhhHHHHHHHhHHHHH-----hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcE
Q 007583 341 LPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV-----EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM 415 (597)
Q Consensus 341 l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~-----~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~ 415 (597)
...+.+++++||||.... ...+........+... .+|.+++|+|++.+ ......+....+.+++ .
T Consensus 151 ~~~~~D~ViIDT~G~~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~-------~ 220 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQN-KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGL-------T 220 (272)
T ss_pred HHCCCCEEEEeCCCCCcc-hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCC-------C
Confidence 024568899999998543 1222222222222221 27889999999754 3344444455545553 4
Q ss_pred EEEEecCCCCC
Q 007583 416 IEVWNKIDYHD 426 (597)
Q Consensus 416 IiVlNKiDl~~ 426 (597)
-+|+||+|...
T Consensus 221 g~IlTKlDe~~ 231 (272)
T TIGR00064 221 GIILTKLDGTA 231 (272)
T ss_pred EEEEEccCCCC
Confidence 68999999754
No 343
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=9.4e-06 Score=85.43 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc--------------ccccccce-------ecCc-eeE-EEe-----------cC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF--------------SDARLFAT-------LDPR-LKS-VVL-----------PS 343 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~--------------~~~~~f~T-------ld~t-~~~-i~l-----------~~ 343 (597)
.+||++|-..+|||||+-.|+..... -+-+.+.| +-.. .+. +.+ ..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 58999999999999999998743210 00000111 0000 000 001 01
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEec
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 421 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNK 421 (597)
.+-+.++|.+|+... .+.|...+. ..+.+++|+.+..+ ........+.++..+++ |+.++++|
T Consensus 248 SKlvTfiDLAGh~kY--------~~TTi~gLtgY~Ph~A~LvVsA~~G-i~~tTrEHLgl~~AL~i------PfFvlvtK 312 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKY--------QKTTIHGLTGYTPHFACLVVSADRG-ITWTTREHLGLIAALNI------PFFVLVTK 312 (591)
T ss_pred cceEEEeecccchhh--------heeeeeecccCCCceEEEEEEcCCC-CccccHHHHHHHHHhCC------CeEEEEEe
Confidence 234578999998432 233333332 25788899988776 33333334456666776 99999999
Q ss_pred CCCCCccc
Q 007583 422 IDYHDEEM 429 (597)
Q Consensus 422 iDl~~~~~ 429 (597)
+|+++...
T Consensus 313 ~Dl~~~~~ 320 (591)
T KOG1143|consen 313 MDLVDRQG 320 (591)
T ss_pred eccccchh
Confidence 99998743
No 344
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.95 E-value=6.3e-06 Score=79.81 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc-----CCCc-cccccc-ceecC------ceeEEEec----------------------
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD-----SDLF-SDARLF-ATLDP------RLKSVVLP---------------------- 342 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g-----~~v~-~~~~~f-~Tld~------t~~~i~l~---------------------- 342 (597)
|++.|.|+.|||||||++.|+. ..+. +.+..+ ...|. ......+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 6899999999999999999993 2110 111000 00000 00111111
Q ss_pred C--CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEe
Q 007583 343 S--GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 343 ~--g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlN 420 (597)
. +.+.+++.|.|.... ..+. .....+......+.++.|+|+..- ......-.-+..++...+ ++|+|
T Consensus 81 ~~~~~d~IiIE~sG~a~p--~~l~-~~~~~~~~~~~~~~iI~vVDa~~~--~~~~~~~~~~~~Qi~~AD------vIvln 149 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADP--APLI-LQDPPLKEDFRLDSIITVVDATNF--DELENIPELLREQIAFAD------VIVLN 149 (178)
T ss_dssp CHGC-SEEEEEEECSSGG--GGHH-HHSHHHHHHESESEEEEEEEGTTH--GGHTTHCHHHHHHHCT-S------EEEEE
T ss_pred cCCCcCEEEECCcccccc--chhh-hccccccccccccceeEEeccccc--cccccchhhhhhcchhcC------EEEEe
Confidence 1 246788999997543 3331 113344455567889999999652 112222223455666544 89999
Q ss_pred cCCCCCcc
Q 007583 421 KIDYHDEE 428 (597)
Q Consensus 421 KiDl~~~~ 428 (597)
|+|+++.+
T Consensus 150 K~D~~~~~ 157 (178)
T PF02492_consen 150 KIDLVSDE 157 (178)
T ss_dssp -GGGHHHH
T ss_pred ccccCChh
Confidence 99998876
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.95 E-value=2.3e-05 Score=74.04 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=36.8
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 371 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 371 l~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+..+|++++|+|++.+.. .....+...+.... ..+|+|+|+||+|+.+.
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~-~~~~~i~~~l~~~~----~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMG-TRCKHVEEYLKKEK----PHKHLIFVLNKCDLVPT 54 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcc-ccCHHHHHHHHhcc----CCCCEEEEEEchhcCCH
Confidence 455677999999999998732 23445556665431 12489999999999754
No 346
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.93 E-value=1.8e-05 Score=82.33 Aligned_cols=60 Identities=25% Similarity=0.221 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC----cccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL----FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v----~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
.+.+++|.+|+|||||+|+|.+... .++....-...+|+....++-...-.++|||||.+
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~ 228 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRS 228 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCc
Confidence 4899999999999999999998542 12222212222333333332222346899999954
No 347
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=1.2e-05 Score=82.15 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEe---ecccccccchhh--HHHHHHHhHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLS---DTVGFISDLPLQ--LVDAFHATLE 372 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~Li---DTpG~i~~lp~~--lve~f~sTl~ 372 (597)
-.++|+||||||||||+++++|.. .|..+.+.+ .+..+.-. ...|++ |+. +.-.|..|..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll-----------~p~~G~i~~-~g~~~~~~~~~~~IgYV---PQ~~~~d~~fP~tV~ 95 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLL-----------KPSSGEIKI-FGKPVRKRRKRLRIGYV---PQKSSVDRSFPITVK 95 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-----------cCCcceEEE-ccccccccccCCeEEEc---CcccccCCCCCcCHH
Confidence 589999999999999999999965 566666665 33322211 234553 442 2233455665
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLK 413 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~ 413 (597)
++......-.. -..........+.+.+.|+.+|+.+..++
T Consensus 96 d~V~~g~~~~~-g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r 135 (254)
T COG1121 96 DVVLLGRYGKK-GWFRRLNKKDKEKVDEALERVGMEDLRDR 135 (254)
T ss_pred HHHHccCcccc-cccccccHHHHHHHHHHHHHcCchhhhCC
Confidence 55554322211 00111234557788888999888654443
No 348
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.91 E-value=8.2e-05 Score=81.53 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=65.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH------cCCCcc--ccc-c---------cce-ecCceeEEEe----------------
Q 007583 297 LATVAVVGYTNAGKSTLVSALS------DSDLFS--DAR-L---------FAT-LDPRLKSVVL---------------- 341 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~------g~~v~~--~~~-~---------f~T-ld~t~~~i~l---------------- 341 (597)
..+|+++|.+|+||||++..|+ |..+.. .+. . .+. ..........
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999997 333211 110 0 000 0000000000
Q ss_pred cCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEec
Q 007583 342 PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 421 (597)
Q Consensus 342 ~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNK 421 (597)
..+.+++++||||...... .+....... ......|.+++|+|++.+. .....+...-+.++ +.-+|+||
T Consensus 180 ~~~~DvViIDTaGr~~~d~-~lm~El~~i-~~~~~p~e~lLVlda~~Gq--~a~~~a~~F~~~~~-------~~g~IlTK 248 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQED-SLFEEMLQV-AEAIQPDNIIFVMDGSIGQ--AAEAQAKAFKDSVD-------VGSVIITK 248 (429)
T ss_pred hCCCCEEEEECCCCCcchH-HHHHHHHHH-hhhcCCcEEEEEeccccCh--hHHHHHHHHHhccC-------CcEEEEEC
Confidence 0256889999999744322 222333222 2344678899999987652 22222222222233 45789999
Q ss_pred CCCCC
Q 007583 422 IDYHD 426 (597)
Q Consensus 422 iDl~~ 426 (597)
+|-..
T Consensus 249 lD~~a 253 (429)
T TIGR01425 249 LDGHA 253 (429)
T ss_pred ccCCC
Confidence 99754
No 349
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.90 E-value=7.9e-06 Score=82.52 Aligned_cols=124 Identities=27% Similarity=0.260 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
+...|.++|.+.+|||||+.-|+|....+....|+|+....+.+.+ .+-.+.+.|.||+|+..-..- ..-++.+...+
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgk-grg~qviavar 135 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGK-GRGKQVIAVAR 135 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec-cccceeeecCcchhcccccCC-CCccEEEEEee
Confidence 4568999999999999999999998877888888888776677766 889999999999986422210 11122333455
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
.|.++++|+|+..|. .....+...|+-+|+......|- +.+-|-|.
T Consensus 136 tcnli~~vld~~kp~--~hk~~ie~eleg~girlnk~pp~-i~~kkKdk 181 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPL--SHKKIIEKELEGFGIRLNKQPPN-IGTKKKDK 181 (358)
T ss_pred cccEEEEEeeccCcc--cHHHHHHHhhhcceeeccCCCCC-cccccccc
Confidence 689999999998773 45556777888888754443343 33445454
No 350
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.90 E-value=4.3e-05 Score=81.00 Aligned_cols=123 Identities=19% Similarity=0.282 Sum_probs=69.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC----Cc-ccccccc-eec------CceeEEEecC--------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD----LF-SDARLFA-TLD------PRLKSVVLPS-------------------- 343 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~----v~-~~~~~f~-Tld------~t~~~i~l~~-------------------- 343 (597)
.+|++.|.|+-|||||||+|.|+... +. +.+..+. .+| .......+.+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 57999999999999999999998542 11 1111110 011 0011122211
Q ss_pred -------CceEEEeecccccccchhhHHHHHH--HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc
Q 007583 344 -------GRKVLLSDTVGFISDLPLQLVDAFH--ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN 414 (597)
Q Consensus 344 -------g~~i~LiDTpG~i~~lp~~lve~f~--sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P 414 (597)
..+.+++.|.|... |..+...|. ..+......+.++.|+|+.+. ............++...+
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~--p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~--~~~~~~~~~~~~Qi~~AD----- 153 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMAD--PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHA--DEQMNQFTIAQSQVGYAD----- 153 (318)
T ss_pred HHhccCCCCCEEEEECCCccC--HHHHHHHHhcChhhcccEEeccEEEEEEhhhh--hhhccccHHHHHHHHhCC-----
Confidence 13467888888854 444444441 123333446789999998753 111111112334554433
Q ss_pred EEEEEecCCCCCcc
Q 007583 415 MIEVWNKIDYHDEE 428 (597)
Q Consensus 415 ~IiVlNKiDl~~~~ 428 (597)
++|+||+|++++.
T Consensus 154 -~IvlnK~Dl~~~~ 166 (318)
T PRK11537 154 -RILLTKTDVAGEA 166 (318)
T ss_pred -EEEEeccccCCHH
Confidence 8999999998754
No 351
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.90 E-value=9.7e-05 Score=78.30 Aligned_cols=120 Identities=21% Similarity=0.240 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccc-ccccceecC----------------ceeEEE------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATLDP----------------RLKSVV------------------ 340 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-~~~f~Tld~----------------t~~~i~------------------ 340 (597)
+..+++++|++|+||||++..|++...... .....+.|+ ....+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 347999999999999999999985321000 000000010 000010
Q ss_pred ecCCceEEEeecccccccchhhHHHHHHHhHHHH-----HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcE
Q 007583 341 LPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEV-----VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM 415 (597)
Q Consensus 341 l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l-----~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~ 415 (597)
...+.+++++||||...... .+.+........+ ...+-.++|+|++.+ ......+....+.++ +.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~-~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~~-------~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKT-NLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAVG-------LT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCH-HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhCC-------CC
Confidence 12356789999999854322 2222332222221 235678899999865 223333444444444 35
Q ss_pred EEEEecCCCC
Q 007583 416 IEVWNKIDYH 425 (597)
Q Consensus 416 IiVlNKiDl~ 425 (597)
-+|+||+|-.
T Consensus 263 giIlTKlD~t 272 (318)
T PRK10416 263 GIILTKLDGT 272 (318)
T ss_pred EEEEECCCCC
Confidence 7899999954
No 352
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.88 E-value=2.8e-05 Score=81.15 Aligned_cols=58 Identities=31% Similarity=0.337 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccccccc----ceecCcee--EEEecCCceEEEeecccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLF----ATLDPRLK--SVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f----~Tld~t~~--~i~l~~g~~i~LiDTpG~i~ 357 (597)
.+++++|++|+|||||+|+|+|.......... ....+|.. .+.++. ...++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~--~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG--GGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC--CCEEEECCCCCc
Confidence 37999999999999999999997532221111 01111221 233322 237999999954
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=4.8e-05 Score=82.05 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=65.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcc---cccccceecCc------------------eeEEEe----------cCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFS---DARLFATLDPR------------------LKSVVL----------PSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~---~~~~f~Tld~t------------------~~~i~l----------~~g~~ 346 (597)
.+++|+|++|+||||++..|.+..... ....+.|.++. ...+.. ..+.+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 589999999999999999998643111 11122232321 011100 13568
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCC-CcEEEEEecCCCC
Q 007583 347 VLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKL-KNMIEVWNKIDYH 425 (597)
Q Consensus 347 i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~-~P~IiVlNKiDl~ 425 (597)
++++||+|..... ..+.+... .+.......-.++|++++.. .....+.+..+-...+.+.... ..-=+|++|.|-.
T Consensus 218 lVLIDTaG~~~~d-~~l~e~La-~L~~~~~~~~~lLVLsAts~-~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 218 MVLIDTIGMSQRD-RTVSDQIA-MLHGADTPVQRLLLLNATSH-GDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred EEEEcCCCCCccc-HHHHHHHH-HHhccCCCCeEEEEecCccC-hHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 8999999984321 11222221 12222234456889998865 2222223333322222211000 0234778999975
Q ss_pred Cc
Q 007583 426 DE 427 (597)
Q Consensus 426 ~~ 427 (597)
..
T Consensus 295 ~~ 296 (374)
T PRK14722 295 SN 296 (374)
T ss_pred CC
Confidence 43
No 354
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.86 E-value=2.3e-05 Score=78.03 Aligned_cols=127 Identities=18% Similarity=0.208 Sum_probs=86.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHH-HHH-hHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDA-FHA-TLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~-f~s-Tl~~l 374 (597)
..|.++|.+||||||+=..+....+ .-...+++|++....++.+.++.-+.+||.-|+. .+.+. +.+ .-.-.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-----~fmen~~~~q~d~iF 79 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-----EFMENYLSSQEDNIF 79 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-----HHHHHHHhhcchhhh
Confidence 5899999999999998666654332 2234578888888888877677788899999982 12222 221 11234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
...+++++|+|++....+.+.......|+.+-.. .....+.+.+.|+|++..+..
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchH
Confidence 5678999999998776666666666666555221 112357889999999876543
No 355
>PRK00098 GTPase RsgA; Reviewed
Probab=97.86 E-value=4.2e-05 Score=80.30 Aligned_cols=57 Identities=32% Similarity=0.378 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccccccc-------ceecCceeEEEecCCceEEEeecccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLF-------ATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f-------~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
.+++++|++|+|||||+|+|++.......... .|+ .....+.+++ ...++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT-~~~~~~~~~~--~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTT-THVELYDLPG--GGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCccc-ccEEEEEcCC--CcEEEECCCcCc
Confidence 47899999999999999999987532221111 121 1112222322 247899999973
No 356
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.84 E-value=1.8e-05 Score=85.27 Aligned_cols=56 Identities=36% Similarity=0.352 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC------cccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
..|.+||.+|+|||||+|+|++... .++..+++|+... .+.+ +..+.++||||+..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~--~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPL--DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEe--CCCCEEEECCCCCC
Confidence 4899999999999999999998542 3445555565433 2222 34567999999964
No 357
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=4.1e-05 Score=82.66 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=65.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccc-ccccceecCce----------------eEEEe-------------c--CC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATLDPRL----------------KSVVL-------------P--SG 344 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-~~~f~Tld~t~----------------~~i~l-------------~--~g 344 (597)
..+|+|+|++|+||||++..|+....... ...+.+.|+.. ..+.. . .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 46899999999999999999974221000 00011111100 00000 0 13
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
.+++|+||+|...... .........+. ....+.+++|+|++.. ......+.+.+..+++ -=++++|.|-
T Consensus 321 ~DvVLIDTaGRs~kd~-~lm~EL~~~lk-~~~PdevlLVLsATtk--~~d~~~i~~~F~~~~i-------dglI~TKLDE 389 (436)
T PRK11889 321 VDYILIDTAGKNYRAS-ETVEEMIETMG-QVEPDYICLTLSASMK--SKDMIEIITNFKDIHI-------DGIVFTKFDE 389 (436)
T ss_pred CCEEEEeCccccCcCH-HHHHHHHHHHh-hcCCCeEEEEECCccC--hHHHHHHHHHhcCCCC-------CEEEEEcccC
Confidence 5889999999854322 22233333332 2345778889998653 2233333344444443 3578999997
Q ss_pred CC
Q 007583 425 HD 426 (597)
Q Consensus 425 ~~ 426 (597)
..
T Consensus 390 T~ 391 (436)
T PRK11889 390 TA 391 (436)
T ss_pred CC
Confidence 54
No 358
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.78 E-value=1.9e-05 Score=86.46 Aligned_cols=59 Identities=29% Similarity=0.365 Sum_probs=44.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC-CcccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~-v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
...+|++|||+|+||||+||+|.|.. +.++..++.|-..++ +.+ ...+.|.|.||++..
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT--i~l--s~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT--IFL--SPSVCLCDCPGLVFP 372 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEE--EEc--CCCceecCCCCcccc
Confidence 36899999999999999999999987 455556666655443 333 335789999999753
No 359
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.78 E-value=2.8e-05 Score=76.45 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=75.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE--EEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV--LLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i--~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...++|||..++|||+|+-..+... +...+.++-.+.....+...+|..+ .+|||+|+.+.. .++ -..+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD------rlR--plsY 74 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNA-FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD------RLR--PLSY 74 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCc-CcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccc------ccc--ccCC
Confidence 3689999999999999998888764 3333333333555555666336554 699999995431 111 1245
Q ss_pred HhcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|+++.++++.++.+.+. ...+.-.+...- ...|+|+|.+|.||.+
T Consensus 75 ~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 75 PQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC----PNVPIILVGTKADLRD 123 (198)
T ss_pred CCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhh
Confidence 67899999899887754433 223322222222 2359999999999974
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.77 E-value=8.4e-05 Score=77.12 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=39.0
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|.++....+.....+..+|++++|+|+..+..... ..+.+.+ . .+|+|+|+||+|+.+
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l---~-----~kp~IiVlNK~DL~~ 62 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR---G-----NKPRLIVLNKADLAD 62 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH---C-----CCCEEEEEEccccCC
Confidence 33444566667778888999999999987633222 2222322 1 248999999999864
No 361
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.76 E-value=6.5e-05 Score=80.38 Aligned_cols=127 Identities=25% Similarity=0.312 Sum_probs=71.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC----Cc----------ccccccceecC----ceeEEEecCC-------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD----LF----------SDARLFATLDP----RLKSVVLPSG------------- 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~----v~----------~~~~~f~Tld~----t~~~i~l~~g------------- 344 (597)
.+|++.|.|+-|||||||+|.|+... +. +...+...... ....+.+.+|
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 47999999999999999999998532 10 01111100000 0012222222
Q ss_pred ----------ceEEEeecccccccchhhHHHHHHH-hHHHHHhcCEEEEEEeCCCCChH------HH-------------
Q 007583 345 ----------RKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCTAPNLE------EH------------- 394 (597)
Q Consensus 345 ----------~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aDliL~VvDas~~~~~------~~------------- 394 (597)
.+.+++.|.|... |..+...|.. .+......|.++.|+|+...... ..
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~--P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLAL--PKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCC--HHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 3568899999854 4555555521 22333457889999999742100 00
Q ss_pred HHHH-HHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 395 RTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 395 ~~~v-~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
...+ ..+..++... -++|+||+|++++++.
T Consensus 161 ~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~~~~l 191 (341)
T TIGR02475 161 ETPLEELFEDQLACA------DLVILNKADLLDAAGL 191 (341)
T ss_pred cchHHHHHHHHHHhC------CEEEEeccccCCHHHH
Confidence 0001 1223455543 3899999999987643
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.75 E-value=0.00011 Score=70.45 Aligned_cols=58 Identities=28% Similarity=0.335 Sum_probs=38.9
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|.++...+......+..||++++|+|++.+..... .. ++..+. .+|.++|+||+|+.+
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~---i~~~~~-----~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PL---LEKILG-----NKPRIIVLNKADLAD 60 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hh---hHhHhc-----CCCEEEEEehhhcCC
Confidence 33444566777888899999999999987633221 11 222221 248999999999853
No 363
>PRK14974 cell division protein FtsY; Provisional
Probab=97.75 E-value=0.00018 Score=76.82 Aligned_cols=72 Identities=25% Similarity=0.329 Sum_probs=43.9
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
+.+++++||+|.... +..+....+.. ......|.+++|+|+..+ ......+......+++ --+++||+|
T Consensus 222 ~~DvVLIDTaGr~~~-~~~lm~eL~~i-~~~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~-------~giIlTKlD 290 (336)
T PRK14974 222 GIDVVLIDTAGRMHT-DANLMDELKKI-VRVTKPDLVIFVGDALAG--NDAVEQAREFNEAVGI-------DGVILTKVD 290 (336)
T ss_pred CCCEEEEECCCccCC-cHHHHHHHHHH-HHhhCCceEEEeeccccc--hhHHHHHHHHHhcCCC-------CEEEEeeec
Confidence 457899999998642 22333333222 234457889999999764 2333333333344453 468899999
Q ss_pred CCC
Q 007583 424 YHD 426 (597)
Q Consensus 424 l~~ 426 (597)
...
T Consensus 291 ~~~ 293 (336)
T PRK14974 291 ADA 293 (336)
T ss_pred CCC
Confidence 753
No 364
>PRK13796 GTPase YqeH; Provisional
Probab=97.74 E-value=3.5e-05 Score=83.22 Aligned_cols=56 Identities=36% Similarity=0.378 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC------CcccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
..+.+||.+|+|||||+|+|.+.. +.++..+++|++.. .+.+ +....++||||++.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l--~~~~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPL--DDGSFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEc--CCCcEEEECCCccc
Confidence 378999999999999999998643 12344555555432 2333 23357999999964
No 365
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.74 E-value=6.8e-05 Score=70.46 Aligned_cols=55 Identities=35% Similarity=0.371 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCceeEEEecCCceEEEeecccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGF 355 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~ 355 (597)
...++++|.+|+|||||+|+|.+..... ......|... ..+. .+..+.++||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~--~~~~--~~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGE--QLVK--ITSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeee--EEEE--cCCCEEEEECcCC
Confidence 3578999999999999999999865322 2222222221 1122 2346889999995
No 366
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.74 E-value=8.7e-05 Score=77.46 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=39.2
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
|.++....+.....+..+|++++|+|+..+..... ..+.+.+ + .+|+++|+||+|+.+
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~---~-----~kp~iiVlNK~DL~~ 65 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII---G-----NKPRLLILNKSDLAD 65 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh---C-----CCCEEEEEEchhcCC
Confidence 44445566777778888999999999987633222 2222222 1 248999999999864
No 367
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00012 Score=80.24 Aligned_cols=120 Identities=22% Similarity=0.249 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcc---cccccceecCce-------------eEEE---------------ecCCc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFS---DARLFATLDPRL-------------KSVV---------------LPSGR 345 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~---~~~~f~Tld~t~-------------~~i~---------------l~~g~ 345 (597)
..+|+|||+||+||||++..|++..+.. ......+.+... ..+. -..+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 3699999999999999999988642110 000011111100 0000 01345
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 346 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 346 ~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
.++++||+|+-..... +.+.... +.......-.++|+|++.. ......+......+++ -=++++|.|-.
T Consensus 271 d~VLIDTaGrsqrd~~-~~~~l~~-l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~~-------~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRDQM-LAEQIAM-LSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHGI-------HGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcchHH-HHHHHHH-HhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCCC-------CEEEEEeeeCC
Confidence 7799999998654322 2222221 2222223456788998754 3333433344444443 35789999975
Q ss_pred Cc
Q 007583 426 DE 427 (597)
Q Consensus 426 ~~ 427 (597)
..
T Consensus 340 ~~ 341 (420)
T PRK14721 340 AS 341 (420)
T ss_pred CC
Confidence 43
No 368
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.73 E-value=1.4e-05 Score=81.80 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|+||||||||+++|+|..
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999999965
No 369
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00047 Score=77.86 Aligned_cols=121 Identities=25% Similarity=0.272 Sum_probs=71.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccce-------------------------------------------ec
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFAT-------------------------------------------LD 333 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~T-------------------------------------------ld 333 (597)
.-+|++.|.+++||||++|+++...+..++...+| ..
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 36899999999999999999986543322222211 01
Q ss_pred CceeEEEecCC------ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC
Q 007583 334 PRLKSVVLPSG------RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV 407 (597)
Q Consensus 334 ~t~~~i~l~~g------~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi 407 (597)
+..-.+.+|++ .++.++|.||.--+ ..+... .-.....+|++++|+.+-+..+....+. +....-
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~--se~tsw---id~~cldaDVfVlV~NaEntlt~sek~F----f~~vs~ 259 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--SELTSW---IDSFCLDADVFVLVVNAENTLTLSEKQF----FHKVSE 259 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCc--hhhhHH---HHHHhhcCCeEEEEecCccHhHHHHHHH----HHHhhc
Confidence 12223444444 35789999998322 211111 1223456999999998865433333333 333222
Q ss_pred CccCCCcEEEEEecCCCCCccc
Q 007583 408 SEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 408 ~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
. +..+.|+.||.|....++
T Consensus 260 ~---KpniFIlnnkwDasase~ 278 (749)
T KOG0448|consen 260 E---KPNIFILNNKWDASASEP 278 (749)
T ss_pred c---CCcEEEEechhhhhcccH
Confidence 1 124777788889887653
No 370
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.71 E-value=0.00015 Score=70.46 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.1
Q ss_pred cEEEccCCCCCCHHHHHHHHHHHHh
Q 007583 539 PDVKISARTGVGLQELLEIIDERLK 563 (597)
Q Consensus 539 pvv~vSA~tG~Gi~eLL~~I~~~~~ 563 (597)
+++++||.+|.|+++|++.|.+.+.
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4889999999999999999988774
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.71 E-value=0.00028 Score=67.54 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=45.6
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
+.+++++||+|.... .......+.. +......|.+++|+|+..+ ....+.....++..++ .-+|+||+|
T Consensus 82 ~~d~viiDt~g~~~~-~~~~l~~l~~-l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~~-------~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQI-DENLMEELKK-IKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALGI-------TGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchh-hHHHHHHHHH-HHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCCC-------CEEEEECCc
Confidence 557899999998543 2222233322 2233458899999998654 3344555555555553 467789999
Q ss_pred CCCcc
Q 007583 424 YHDEE 428 (597)
Q Consensus 424 l~~~~ 428 (597)
.....
T Consensus 151 ~~~~~ 155 (173)
T cd03115 151 GDARG 155 (173)
T ss_pred CCCCc
Confidence 76543
No 372
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=4.9e-05 Score=78.37 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC-cccc--cccceec-----------------------------CceeEEEecCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDA--RLFATLD-----------------------------PRLKSVVLPSG 344 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~--~~f~Tld-----------------------------~t~~~i~l~~g 344 (597)
..+|+-+|+.-.||||+++++.|-.. ...+ ..-.|+. +.......++.
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 57999999999999999999987431 0000 0000000 00000000000
Q ss_pred -------ceEEEeecccccccchhhHHHHH-HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEE
Q 007583 345 -------RKVLLSDTVGFISDLPLQLVDAF-HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI 416 (597)
Q Consensus 345 -------~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~I 416 (597)
+.+-++|.||+ +.. ...+....-.|.+++.+-+..+-...+....+...+-+.+ +.++
T Consensus 118 ~~~~klvRHVSfVDCPGH---------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-----khii 183 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGH---------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-----KHII 183 (466)
T ss_pred CCceEEEEEEEeccCCch---------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----ceEE
Confidence 23568999998 222 3445666667888877776554333333333333333333 3689
Q ss_pred EEEecCCCCCcccc
Q 007583 417 EVWNKIDYHDEEMG 430 (597)
Q Consensus 417 iVlNKiDl~~~~~~ 430 (597)
++-||+|++..++.
T Consensus 184 ilQNKiDli~e~~A 197 (466)
T KOG0466|consen 184 ILQNKIDLIKESQA 197 (466)
T ss_pred EEechhhhhhHHHH
Confidence 99999999887654
No 373
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00019 Score=80.15 Aligned_cols=118 Identities=21% Similarity=0.162 Sum_probs=62.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcc---cccccceecCc------------------eeEEE----------ecCCc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFS---DARLFATLDPR------------------LKSVV----------LPSGR 345 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~---~~~~f~Tld~t------------------~~~i~----------l~~g~ 345 (597)
..+|+|+|++|+||||++..|....... ......+.|+. ..... ...+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 3699999999999999999987531100 01111122210 00000 01246
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 346 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 346 ~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+++|+||+|....... +.+.+. .+..... ...++|+++... ......+.+.+...+ +.-+|+||+|..
T Consensus 430 DLVLIDTaG~s~~D~~-l~eeL~-~L~aa~~-~a~lLVLpAtss--~~Dl~eii~~f~~~~-------~~gvILTKlDEt 497 (559)
T PRK12727 430 KLVLIDTAGMGQRDRA-LAAQLN-WLRAARQ-VTSLLVLPANAH--FSDLDEVVRRFAHAK-------PQGVVLTKLDET 497 (559)
T ss_pred CEEEecCCCcchhhHH-HHHHHH-HHHHhhc-CCcEEEEECCCC--hhHHHHHHHHHHhhC-------CeEEEEecCcCc
Confidence 7899999998532211 122221 1222222 235667777643 233333333344332 567999999974
Q ss_pred C
Q 007583 426 D 426 (597)
Q Consensus 426 ~ 426 (597)
.
T Consensus 498 ~ 498 (559)
T PRK12727 498 G 498 (559)
T ss_pred c
Confidence 3
No 374
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.67 E-value=0.00038 Score=73.92 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccc----ccccceecCc----eeEEEe-cCCc--eEEEeecccccccchh----
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSD----ARLFATLDPR----LKSVVL-PSGR--KVLLSDTVGFISDLPL---- 361 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~----~~~f~Tld~t----~~~i~l-~~g~--~i~LiDTpG~i~~lp~---- 361 (597)
..+|.++|++|.||||++|.|++..+... +.....+.++ .....+ .+|. .+.++|||||.+.+..
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 48999999999999999999998743211 1112112222 122222 2343 5679999999754322
Q ss_pred -----hHHHHHHHhHHHH-----------HhcCEEEEEEeCCC-CChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 362 -----QLVDAFHATLEEV-----------VEADLLVHVLDCTA-PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 362 -----~lve~f~sTl~~l-----------~~aDliL~VvDas~-~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
.+...|.+.+.+= ...+++||.+-.+. +...-..+.+..+-..+ .+|=|+-|+|.
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v--------NlIPVI~KaD~ 174 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV--------NLIPVIAKADT 174 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc--------Ceeeeeecccc
Confidence 1111222222110 12456777776543 22333333333322222 57889999999
Q ss_pred CCcccc
Q 007583 425 HDEEMG 430 (597)
Q Consensus 425 ~~~~~~ 430 (597)
...++.
T Consensus 175 lT~~El 180 (373)
T COG5019 175 LTDDEL 180 (373)
T ss_pred CCHHHH
Confidence 887654
No 375
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00011 Score=74.51 Aligned_cols=37 Identities=35% Similarity=0.570 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-.|+|+|++|||||||+|.++|.. .|+.+.+.+ +|..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~-----------~p~~G~V~~-~g~~ 66 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE-----------KPTSGEVLL-DGRP 66 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEE-CCcc
Confidence 489999999999999999999987 566666666 4433
No 376
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.61 E-value=0.0003 Score=75.99 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=65.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC--c-ccccccceecCce------------------eEEEe----------cCCc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL--F-SDARLFATLDPRL------------------KSVVL----------PSGR 345 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v--~-~~~~~f~Tld~t~------------------~~i~l----------~~g~ 345 (597)
..+|+||||||+||||.+-.|..... . .....+.|+|... ..+.- ....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 47999999999999999998876543 1 1112233444310 00000 1246
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 346 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 346 ~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+++|+||.|.-...+..+ +......... ...-..+|++++.. ......+..-+..+++ -=++++|+|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i-~el~~~~~~~-~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i-------~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKI-EELKELIDVS-HSIEVYLVLSATTK--YEDLKEIIKQFSLFPI-------DGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHH-HHHHHHHhcc-ccceEEEEEecCcc--hHHHHHHHHHhccCCc-------ceeEEEccccc
Confidence 889999999854433322 2222222222 23345667777653 3333333333444443 24679999965
Q ss_pred C
Q 007583 426 D 426 (597)
Q Consensus 426 ~ 426 (597)
.
T Consensus 352 ~ 352 (407)
T COG1419 352 T 352 (407)
T ss_pred C
Confidence 4
No 377
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.61 E-value=0.00052 Score=64.74 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHc
Q 007583 300 VAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g 319 (597)
++++|.+|+|||||+..|..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999974
No 378
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.59 E-value=0.00014 Score=68.64 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=27.8
Q ss_pred CEEEEEEeCCCCChHHHHHHHH-HHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVL-QVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~-~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
|++++|+|++.+..... ..+. ..+...+ +|+|+|+||+|+.+.
T Consensus 1 Dvvl~VvD~~~p~~~~~-~~i~~~~~~~~~------~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 1 DVILEVLDARDPLGTRS-PDIERVLIKEKG------KKLILVLNKADLVPK 44 (155)
T ss_pred CEEEEEEeccCCccccC-HHHHHHHHhcCC------CCEEEEEechhcCCH
Confidence 78999999987633222 2222 2222222 499999999998653
No 379
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00036 Score=74.49 Aligned_cols=126 Identities=22% Similarity=0.239 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccc-------ccccceecCceeEEEe-cCCc--eEEEeecccccccchh-----
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSD-------ARLFATLDPRLKSVVL-PSGR--KVLLSDTVGFISDLPL----- 361 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-------~~~f~Tld~t~~~i~l-~~g~--~i~LiDTpG~i~~lp~----- 361 (597)
-.++-++|.+|.|||||+|.|.+..+... ..+..|.........+ ++|. ++.++|||||-+....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999998753221 1111122222222222 3444 4578999999643211
Q ss_pred ----hHHHHHHHhHHH--------HH--hcCEEEEEEeCCCC-ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 362 ----QLVDAFHATLEE--------VV--EADLLVHVLDCTAP-NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 362 ----~lve~f~sTl~~--------l~--~aDliL~VvDas~~-~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+...|...+.+ .. ..+++||.+..+.. ...-... .|+.+... .++|-|+-|+|...
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~----~Mk~l~~~----vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE----FMKKLSKK----VNLIPVIAKADTLT 172 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH----HHHHHhcc----ccccceeeccccCC
Confidence 111222222211 11 34667777765433 2223333 33333221 25688899999988
Q ss_pred cccc
Q 007583 427 EEMG 430 (597)
Q Consensus 427 ~~~~ 430 (597)
.++.
T Consensus 173 ~~El 176 (366)
T KOG2655|consen 173 KDEL 176 (366)
T ss_pred HHHH
Confidence 7654
No 380
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.55 E-value=0.00094 Score=62.45 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
-.++|+|++|+|||||++.|+|.. .+..+.+.+ ++.. ..|++.+++............-+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~-----------~~~~G~i~~-~~~~-----~i~~~~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL-----------EPDEGIVTW-GSTV-----KIGYFEQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC-----------CCCceEEEE-CCeE-----EEEEEccCCHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999976 455566666 3321 23333323333222222222333445
Q ss_pred CEEEEEEeC-CCCChHHHHHHHHHHHHHcC
Q 007583 378 DLLVHVLDC-TAPNLEEHRTTVLQVLQQVG 406 (597)
Q Consensus 378 DliL~VvDa-s~~~~~~~~~~v~~iL~~lg 406 (597)
++ +++|- ....-......+.+.+.+++
T Consensus 90 ~i--lllDEP~~~LD~~~~~~l~~~l~~~~ 117 (144)
T cd03221 90 NL--LLLDEPTNHLDLESIEALEEALKEYP 117 (144)
T ss_pred CE--EEEeCCccCCCHHHHHHHHHHHHHcC
Confidence 54 44553 22222344566677777763
No 381
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.55 E-value=8e-05 Score=76.77 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=72.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcCC----Cc-ccc-------------------------------cccceecCc-e
Q 007583 294 GRGLATVAVVGYTNAGKSTLVSALSDSD----LF-SDA-------------------------------RLFATLDPR-L 336 (597)
Q Consensus 294 ~~~~~~VaLVG~tgAGKSTLlnaL~g~~----v~-~~~-------------------------------~~f~Tld~t-~ 336 (597)
..++|...|.||-|||||||+|.++... +. +.+ .+-+|.... +
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gv 133 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGV 133 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHH
Confidence 3478999999999999999999998432 11 000 000111000 0
Q ss_pred e----EEEecCCceEEEeecccccccchhhHHHHH--HHhHHHHHhcCEEEEEEeCCCCCh----HHHHHHHHHHHHHcC
Q 007583 337 K----SVVLPSGRKVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNL----EEHRTTVLQVLQQVG 406 (597)
Q Consensus 337 ~----~i~l~~g~~i~LiDTpG~i~~lp~~lve~f--~sTl~~l~~aDliL~VvDas~~~~----~~~~~~v~~iL~~lg 406 (597)
+ -+.-++..+.+++.|.|+..+.|.. ..| ...+..-...|.++.|+|+.+... ....-.+.+...++.
T Consensus 134 raie~lvqkkGkfD~IllETTGlAnPaPia--~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA 211 (391)
T KOG2743|consen 134 RAIENLVQKKGKFDHILLETTGLANPAPIA--SMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA 211 (391)
T ss_pred HHHHHHHhcCCCcceEEEeccCCCCcHHHH--HHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh
Confidence 0 0001233467899999997654432 223 223333345789999999865310 011112333444444
Q ss_pred CCccCCCcEEEEEecCCCCCcccc
Q 007583 407 VSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 407 i~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
..+ -+++||.|++..+..
T Consensus 212 ~AD------~II~NKtDli~~e~~ 229 (391)
T KOG2743|consen 212 LAD------RIIMNKTDLVSEEEV 229 (391)
T ss_pred hhh------eeeeccccccCHHHH
Confidence 432 467999999987643
No 382
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.54 E-value=0.00058 Score=75.21 Aligned_cols=119 Identities=24% Similarity=0.217 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-cc--cccccceecCc-------e-----------eEEE----------ecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL-FS--DARLFATLDPR-------L-----------KSVV----------LPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v-~~--~~~~f~Tld~t-------~-----------~~i~----------l~~g~~ 346 (597)
.+++++|++|+||||++..|+.... .. ....+.+.|+. . .... -..+.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 5899999999999999888865321 00 11122222321 0 0000 012467
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 347 VLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 347 i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++++||+|.....+.. ...+...+.......-+.+|++++.. ......+...+..+++ -=++++|+|-..
T Consensus 302 lVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~~-------~~vI~TKlDet~ 371 (424)
T PRK05703 302 VILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLPL-------DGLIFTKLDETS 371 (424)
T ss_pred EEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCCC-------CEEEEecccccc
Confidence 8999999985433222 22222222212123356777887653 3344444444444442 357899999744
No 383
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0003 Score=76.79 Aligned_cols=119 Identities=21% Similarity=0.249 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcc--cccccceecC----------------ceeEEEe-----------cCCceEE
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFS--DARLFATLDP----------------RLKSVVL-----------PSGRKVL 348 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~--~~~~f~Tld~----------------t~~~i~l-----------~~g~~i~ 348 (597)
.+++++|++||||||++..|+...... ......+.|+ ....... ..+.+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 579999999999999999997422000 0000111111 0000000 1356889
Q ss_pred EeecccccccchhhHHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 349 LSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 349 LiDTpG~i~~lp~~lve~f~sTl~~l~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
++||+|+..... ...+.+...+.... ...-.++|+|++.. ......+......+++ -=+|++|.|-..
T Consensus 304 LIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~~~-------~glIlTKLDEt~ 373 (432)
T PRK12724 304 LIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESLNY-------RRILLTKLDEAD 373 (432)
T ss_pred EEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCCCC-------CEEEEEcccCCC
Confidence 999999853322 22233333333221 12357789998865 3344444444455554 357899999653
No 384
>PRK12289 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00025 Score=76.19 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=33.4
Q ss_pred HHHhcCEEEEEEeCCCCChHH-HHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 373 EVVEADLLVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+.++|.+++|+|+.++.... ....++..+...+ .|+|+|+||+|+++.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~------ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTG------LEIVLCLNKADLVSP 135 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEEEEEchhcCCh
Confidence 367799999999998764332 2333333333334 389999999999754
No 385
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.49 E-value=0.0012 Score=62.84 Aligned_cols=24 Identities=42% Similarity=0.446 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|+|||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999976
No 386
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00021 Score=76.97 Aligned_cols=120 Identities=22% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCce--------------e-EEEe----------------cC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRL--------------K-SVVL----------------PS 343 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~--------------~-~i~l----------------~~ 343 (597)
+..+++++|++|+||||++..|+...... ....+.+.|+.. + .+.. ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 35789999999999999999997421000 001111112110 0 0000 02
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
+.+++|+||||........ ........ .....+.+++|+++... ..+...+.+....++ +--++++|.|
T Consensus 285 ~~D~VLIDTAGr~~~d~~~-l~EL~~l~-~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~l~-------i~glI~TKLD 353 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEES-VSEISAYT-DVVHPDLTCFTFSSGMK--SADVMTILPKLAEIP-------IDGFIITKMD 353 (407)
T ss_pred CCCEEEEECCCCCccCHHH-HHHHHHHh-hccCCceEEEECCCccc--HHHHHHHHHhcCcCC-------CCEEEEEccc
Confidence 4688999999985432222 22222222 23345777778776432 222222222223333 3467899999
Q ss_pred CCC
Q 007583 424 YHD 426 (597)
Q Consensus 424 l~~ 426 (597)
-..
T Consensus 354 ET~ 356 (407)
T PRK12726 354 ETT 356 (407)
T ss_pred CCC
Confidence 753
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.46 E-value=0.00045 Score=70.55 Aligned_cols=49 Identities=29% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 373 EVVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+..+|.+++|+|+.++. .......++..+...+ .|+++|+||+||.+.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~------i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQN------IEPIIVLNKIDLLDD 82 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEEEEECcccCCC
Confidence 467799999999999765 3444454444444433 389999999999653
No 388
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.44 E-value=0.00046 Score=72.99 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=40.5
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 346 KVLLSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 346 ~i~LiDTpG~i~~lp~~lve~f~sTl~~l~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
-+.++|.+|+...+ +.|.-.+. ..|...+++-+..+...-..+.+ ++......|+.+|++|||
T Consensus 220 viTFIDLAGHEkYL--------KTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHL-------gLALaL~VPVfvVVTKID 284 (641)
T KOG0463|consen 220 VITFIDLAGHEKYL--------KTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHL-------GLALALHVPVFVVVTKID 284 (641)
T ss_pred eEEEEeccchhhhh--------heeeeccccCCCCceEEEecccccceeccHHhh-------hhhhhhcCcEEEEEEeec
Confidence 45789999994432 33332222 25666777766655322222222 222222349999999999
Q ss_pred CCCcccc
Q 007583 424 YHDEEMG 430 (597)
Q Consensus 424 l~~~~~~ 430 (597)
.+.+.-.
T Consensus 285 MCPANiL 291 (641)
T KOG0463|consen 285 MCPANIL 291 (641)
T ss_pred cCcHHHH
Confidence 9987644
No 389
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00039 Score=75.60 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-----ccccccceecCc------------------eeEEEe----------c
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-----SDARLFATLDPR------------------LKSVVL----------P 342 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-----~~~~~f~Tld~t------------------~~~i~l----------~ 342 (597)
...+|+++|++|+||||.+..|+..... -......+.|+. ...... .
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3468999999999999999888742110 001111222220 000000 1
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
.+..++++||+|........+ ......+.......-.++|+|++.. ......+..-...++ +-=++++|.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l-~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~-------~~~~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKL-AEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFS-------YKTVIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHH-HHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCC-------CCEEEEEec
Confidence 356889999999854322221 2222333322212247889999875 233333323232233 235789999
Q ss_pred CCCCc
Q 007583 423 DYHDE 427 (597)
Q Consensus 423 Dl~~~ 427 (597)
|-...
T Consensus 323 Det~~ 327 (388)
T PRK12723 323 DETTC 327 (388)
T ss_pred cCCCc
Confidence 96543
No 390
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.41 E-value=0.00024 Score=69.00 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+|||+|++|||||||+|.+.|-. .|..+.+.+ +|.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~-----------~P~~G~i~i-~g~d 62 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE-----------TPASGEILI-NGVD 62 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc-----------CCCCceEEE-cCee
Confidence 589999999999999999999976 466666666 4443
No 391
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.40 E-value=0.00045 Score=76.22 Aligned_cols=120 Identities=20% Similarity=0.233 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC------CCc--cccc-ccce----------ec-CceeE-------------EEec
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS------DLF--SDAR-LFAT----------LD-PRLKS-------------VVLP 342 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~------~v~--~~~~-~f~T----------ld-~t~~~-------------i~l~ 342 (597)
...+|.++|++|+||||++..|+.. .+. ..+. ..+. +. |.... +...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 3578999999999999999888632 110 0000 0000 00 00000 0000
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
...+++++||+|.... ...+.+... .+..+..+|.+++|+|++.+ .+....+...-..++ ..-+|+||+
T Consensus 174 ~~~DvVIIDTAGr~~~-d~~lm~El~-~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~~l~-------i~gvIlTKl 242 (437)
T PRK00771 174 KKADVIIVDTAGRHAL-EEDLIEEMK-EIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHEAVG-------IGGIIITKL 242 (437)
T ss_pred hcCCEEEEECCCcccc-hHHHHHHHH-HHHHHhcccceeEEEecccc--HHHHHHHHHHHhcCC-------CCEEEEecc
Confidence 2347899999998543 222333332 23445568999999998765 222222222112222 235789999
Q ss_pred CCCC
Q 007583 423 DYHD 426 (597)
Q Consensus 423 Dl~~ 426 (597)
|-..
T Consensus 243 D~~a 246 (437)
T PRK00771 243 DGTA 246 (437)
T ss_pred cCCC
Confidence 9643
No 392
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00059 Score=79.45 Aligned_cols=121 Identities=19% Similarity=0.167 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccc---ccccceecCce--------------e-EEE-------------ecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSD---ARLFATLDPRL--------------K-SVV-------------LPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~---~~~f~Tld~t~--------------~-~i~-------------l~~g~~ 346 (597)
.+|++||+||+||||++..|++...... .....+.|+.- + .+. -..+.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 5899999999999999999987542111 11122222210 0 000 012457
Q ss_pred EEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCC
Q 007583 347 VLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 347 i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~ 425 (597)
++|+||+|....... +.+.... +......+-.++|+|++.. .+....+.+.+... +.. +-=+|++|.|-.
T Consensus 266 ~VLIDTAGRs~~d~~-l~eel~~-l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-----i~glIlTKLDEt 336 (767)
T PRK14723 266 LVLIDTVGMSQRDRN-VSEQIAM-LCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-----VDGCIITKLDEA 336 (767)
T ss_pred EEEEeCCCCCccCHH-HHHHHHH-HhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-----CCEEEEeccCCC
Confidence 899999997443222 2222222 2222345567889998753 23333333333322 111 234679999975
Q ss_pred Cc
Q 007583 426 DE 427 (597)
Q Consensus 426 ~~ 427 (597)
..
T Consensus 337 ~~ 338 (767)
T PRK14723 337 TH 338 (767)
T ss_pred CC
Confidence 43
No 393
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0013 Score=69.31 Aligned_cols=120 Identities=23% Similarity=0.328 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC------Cc-cccccc-----------------------ceecCceeEEEe----
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD------LF-SDARLF-----------------------ATLDPRLKSVVL---- 341 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~------v~-~~~~~f-----------------------~Tld~t~~~i~l---- 341 (597)
.+.++.+||-||+||||-+-.|+... +. .....| ..-||.. +.+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa--VafDAi~ 215 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAA--VAFDAIQ 215 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH--HHHHHHH
Confidence 46789999999999999998886321 10 000000 0112211 000
Q ss_pred ---cCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCE-----EEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCC
Q 007583 342 ---PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL-----LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLK 413 (597)
Q Consensus 342 ---~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDl-----iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~ 413 (597)
..+.+++|+||+|-...- .+|.+......+-+...+. +++|+|++.+. .....+...=+..++.
T Consensus 216 ~Akar~~DvvliDTAGRLhnk-~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq--nal~QAk~F~eav~l~----- 287 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNK-KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ--NALSQAKIFNEAVGLD----- 287 (340)
T ss_pred HHHHcCCCEEEEeCcccccCc-hhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh--hHHHHHHHHHHhcCCc-----
Confidence 135788999999986542 3444444333333333333 78888998762 2333333333344542
Q ss_pred cEEEEEecCCCCCcc
Q 007583 414 NMIEVWNKIDYHDEE 428 (597)
Q Consensus 414 P~IiVlNKiDl~~~~ 428 (597)
=++++|+| .++.
T Consensus 288 --GiIlTKlD-gtAK 299 (340)
T COG0552 288 --GIILTKLD-GTAK 299 (340)
T ss_pred --eEEEEecc-cCCC
Confidence 47899999 3443
No 394
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.37 E-value=0.0024 Score=69.30 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=36.0
Q ss_pred CCcEEEccCCCCCCHHHHHHHHHHHHhhcccccCCCCcccccccccccC
Q 007583 537 HAPDVKISARTGVGLQELLEIIDERLKTLDDKQKSPNVVERDFFNKKWR 585 (597)
Q Consensus 537 ~~pvv~vSA~tG~Gi~eLL~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (597)
.+||++++.. ...-.+....+.+.|-|+ ||-|-++|-.||-
T Consensus 209 ~vpVlpvnc~-~l~~~DI~~Il~~vLyEF-------PV~Ei~~~lP~Wv 249 (492)
T PF09547_consen 209 DVPVLPVNCE-QLREEDITRILEEVLYEF-------PVSEININLPKWV 249 (492)
T ss_pred CCcEEEeehH-HcCHHHHHHHHHHHHhcC-------CceEEEeecchHH
Confidence 3679999877 488999999999999997 8999999999995
No 395
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.0005 Score=71.25 Aligned_cols=119 Identities=20% Similarity=0.191 Sum_probs=65.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecC------------------ceeEEE-------------ecCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDP------------------RLKSVV-------------LPSG 344 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~------------------t~~~i~-------------l~~g 344 (597)
..+++++|++|+||||++..|++.... .....+.+.++ ...... -..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 379999999999999999998754210 00000011111 000000 0024
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
.+++++||+|....... ..+.+...+. ....+-+++|+|++.. ......+......++ +-=++++|.|-
T Consensus 155 ~D~ViIDt~Gr~~~~~~-~l~el~~~~~-~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~~-------~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKNYRASE-TVEEMIETMG-QVEPDYICLTLSASMK--SKDMIEIITNFKDIH-------IDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCCcCCHH-HHHHHHHHHh-hhCCCeEEEEEcCccC--HHHHHHHHHHhCCCC-------CCEEEEEeecC
Confidence 68899999998543222 2233333332 3356778899998753 223322333333333 34578999997
Q ss_pred CC
Q 007583 425 HD 426 (597)
Q Consensus 425 ~~ 426 (597)
..
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 55
No 396
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.31 E-value=0.0029 Score=61.48 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-+++|+|++|||||||++.|+|.. .|+.+.+.+ ++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~-~g~ 61 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL-----------IPNGDNDEW-DGI 61 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC-----------CCCCcEEEE-CCE
Confidence 589999999999999999999976 455566665 443
No 397
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00035 Score=71.02 Aligned_cols=93 Identities=27% Similarity=0.382 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE-------EEeecccccccchhhHHHHHHHh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV-------LLSDTVGFISDLPLQLVDAFHAT 370 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i-------~LiDTpG~i~~lp~~lve~f~sT 370 (597)
-.++|+|+||||||||++.|.|.. .|+.+.+.+ +|..+ .+.-.+|++.+.|.... |..|
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl-----------~p~~G~v~~-~g~~~~~~~~~~~~~~~vG~VfQnpd~q~--~~~t 96 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLL-----------KPTSGEVLV-DGLDTSSEKSLLELRQKVGLVFQNPDDQL--FGPT 96 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcC-----------cCCCCEEEE-CCeeccchhhHHHhhcceEEEEECccccc--ccCc
Confidence 589999999999999999999976 344455544 44332 24456788877776532 4333
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc
Q 007583 371 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE 409 (597)
Q Consensus 371 l~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~ 409 (597)
..+ |++.-.....- ..++....+.+.|..+++..
T Consensus 97 V~~----evafg~~n~g~-~~~e~~~rv~~~l~~vgl~~ 130 (235)
T COG1122 97 VED----EVAFGLENLGL-PREEIEERVAEALELVGLEE 130 (235)
T ss_pred HHH----HHhhchhhcCC-CHHHHHHHHHHHHHHcCchh
Confidence 332 11111111111 23456677888999998854
No 398
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.27 E-value=0.013 Score=64.86 Aligned_cols=129 Identities=19% Similarity=0.362 Sum_probs=78.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCcccc------------------------------------------------
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDA------------------------------------------------ 326 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~------------------------------------------------ 326 (597)
...|.|++||.-.|||||.+..++...+++.+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 46799999999999999999999855432110
Q ss_pred ------cccceecCceeEEEe--cCCceEEEeecccccccchhhHH----H-HHHHhHHHHHhcCEEEEEEeCCCCChHH
Q 007583 327 ------RLFATLDPRLKSVVL--PSGRKVLLSDTVGFISDLPLQLV----D-AFHATLEEVVEADLLVHVLDCTAPNLEE 393 (597)
Q Consensus 327 ------~~f~Tld~t~~~i~l--~~g~~i~LiDTpG~i~~lp~~lv----e-~f~sTl~~l~~aDliL~VvDas~~~~~~ 393 (597)
.-+.|..+.+-.+.. |+-.+.+++|.||.|.....++. + .|..+-..+.+...|++++- ++....
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDA 463 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDA 463 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcch
Confidence 011122222212221 22246789999999876444321 2 24556667777787777663 222344
Q ss_pred HHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 394 HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 394 ~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
....+..+..++.- ..+..|+|++|+|+....
T Consensus 464 ERSnVTDLVsq~DP---~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDP---HGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred hhhhHHHHHHhcCC---CCCeeEEEEeecchhhhc
Confidence 44455555555432 224789999999997653
No 399
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0006 Score=82.41 Aligned_cols=132 Identities=16% Similarity=0.073 Sum_probs=71.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccccc--ccceecCceeEEEecCCceEEEeecccccccch-h--hHHH---HH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDAR--LFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP-L--QLVD---AF 367 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~--~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp-~--~lve---~f 367 (597)
+.|-..|||++||||||++..- |...+.... ...+..+.++.+.+.-+...+++||.|-..... . .-.. .|
T Consensus 124 eLPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred cCCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHH
Confidence 6899999999999999998653 222221111 111112223444444567789999999654322 1 1111 12
Q ss_pred HHhHH---HHHhcCEEEEEEeCCCC---ChHHH---HHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 368 HATLE---EVVEADLLVHVLDCTAP---NLEEH---RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 368 ~sTl~---~l~~aDliL~VvDas~~---~~~~~---~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
-..+. ...-.+.|++.+|+++- ...+. ...+..-|+++.-.-...-|+.+++||+|++..-
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH
Confidence 11122 22346878888887532 12222 1112222444432222234999999999998753
No 400
>PRK00098 GTPase RsgA; Reviewed
Probab=97.25 E-value=0.00045 Score=72.53 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=32.6
Q ss_pred HHhcCEEEEEEeCCCCChHH-HHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|.+++|+|+.++.... ....+...+...+ .|+++|+||+|+.+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~------ip~iIVlNK~DL~~ 125 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANG------IKPIIVLNKIDLLD 125 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEEEEEhHHcCC
Confidence 56799999999998764322 2344444444444 38999999999963
No 401
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.23 E-value=0.0017 Score=65.29 Aligned_cols=60 Identities=28% Similarity=0.349 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcc-------cccccceec--CceeEEEecCCc--eEEEeeccccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFS-------DARLFATLD--PRLKSVVLPSGR--KVLLSDTVGFISD 358 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~-------~~~~f~Tld--~t~~~i~l~~g~--~i~LiDTpG~i~~ 358 (597)
++|.+||.+|.|||||+|.|....+.- +.....|+. ..+..+. .+|. ++.++|||||-+.
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvie-E~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIE-EKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeee-ecceEEEEEEecCCCcccc
Confidence 899999999999999999998654321 112222222 2222222 2444 4578999999654
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.23 E-value=0.00084 Score=74.79 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.+++|||+|||||||++..|++.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 68999999999999999999864
No 403
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.17 E-value=0.00079 Score=70.33 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=33.6
Q ss_pred HHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|.+++|+|+.++. .....+.+...+...+ .|+++|+||+|+.+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~------ip~iIVlNK~DL~~~ 124 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAG------IEPVIVLTKADLLDD 124 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcC------CCEEEEEEHHHCCCh
Confidence 45699999999998774 3333344444444444 389999999999754
No 404
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00045 Score=68.59 Aligned_cols=24 Identities=46% Similarity=0.573 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|+||||||||++.|+|..
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCcc
Confidence 589999999999999999999976
No 405
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00013 Score=73.68 Aligned_cols=38 Identities=29% Similarity=0.534 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV 347 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i 347 (597)
-+++|+||||||||||+|.|+|.. .|+.+.+.+ +|.++
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~~-----------~P~~G~v~~-~G~~i 68 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGFY-----------KPSSGTVIF-RGRDI 68 (250)
T ss_pred eEEEEECCCCCCceeeeeeecccc-----------cCCCceEEE-CCccc
Confidence 589999999999999999999976 566666766 55433
No 406
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.15 E-value=0.00047 Score=69.44 Aligned_cols=37 Identities=38% Similarity=0.607 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-.|+|+|++|||||||+|.|.+.+ .|+.+.+.+ +|.+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld-----------~pt~G~v~i-~g~d 68 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD-----------KPTSGEVLI-NGKD 68 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc-----------CCCCceEEE-CCEE
Confidence 489999999999999999999987 566666665 4433
No 407
>PRK01889 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.00041 Score=74.73 Aligned_cols=24 Identities=50% Similarity=0.671 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
.+++++|.+|+|||||+|+|+|..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 489999999999999999999865
No 408
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.11 E-value=0.0024 Score=70.42 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=42.3
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
+.+++++||+|..... ..+...... +......|-+++|+|+..+ ......+......+++ .=+|+||+|
T Consensus 182 ~~DvVIIDTaGr~~~d-~~l~~eL~~-i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-------~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQID-EELMEELAA-IKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-------TGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCccccC-HHHHHHHHH-HHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-------CEEEEeCcc
Confidence 4578999999975421 222222222 2334567888999998754 3333444444444554 356799999
Q ss_pred CC
Q 007583 424 YH 425 (597)
Q Consensus 424 l~ 425 (597)
-.
T Consensus 251 ~~ 252 (428)
T TIGR00959 251 GD 252 (428)
T ss_pred Cc
Confidence 53
No 409
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.00061 Score=68.38 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|+||||||||+++|+|..
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.09 E-value=0.00049 Score=62.86 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||+++|+|..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 589999999999999999999976
No 411
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0051 Score=64.84 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
++-+|+++|.-|+|||||++.|.++.
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 68899999999999999999999875
No 412
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.00057 Score=72.73 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+||+||||||||+.|+|..
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999987
No 413
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.07 E-value=0.00081 Score=62.37 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=40.1
Q ss_pred HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 368 HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 368 ~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+...+.+..+|++++|+|++.+.. .....+.+++.... ..+|+++|+||+|+.+.+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-~~~~~l~~~l~~~~----~~k~~iivlNK~DL~~~~ 58 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-FRPPDLERYVKEVD----PRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-cCCHHHHHHHHhcc----CCCcEEEEEechhcCCHH
Confidence 455677888999999999988743 23345566666552 124999999999997543
No 414
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00059 Score=71.15 Aligned_cols=92 Identities=26% Similarity=0.361 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeec---------ccccccchhhHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDT---------VGFISDLPLQLVDAFH 368 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDT---------pG~i~~lp~~lve~f~ 368 (597)
-+.+|+||+|||||||++++.+.. .|+.+.+.+ +|.++.-.+- .|+|.+-+.-+ ..
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN~Le-----------~PtsG~v~v-~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL---ss 97 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLINLLE-----------RPTSGSVFV-DGQDLTALSEAELRQLRQKIGMIFQHFNLL---SS 97 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHhccC-----------CCCCceEEE-cCEecccCChHHHHHHHhhccEEecccccc---cc
Confidence 589999999999999999999987 677888887 6655543332 34433211111 01
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc
Q 007583 369 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE 409 (597)
Q Consensus 369 sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~ 409 (597)
.|..+. +.+-.-.......+....+.++|+.+|+.+
T Consensus 98 rTV~~N-----vA~PLeiag~~k~ei~~RV~elLelVgL~d 133 (339)
T COG1135 98 RTVFEN-----VAFPLELAGVPKAEIKQRVAELLELVGLSD 133 (339)
T ss_pred chHHhh-----hhhhHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence 222221 111111112224566677888888888754
No 415
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.07 E-value=0.011 Score=56.62 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999975
No 416
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00067 Score=68.23 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 417
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.07 E-value=0.00069 Score=65.88 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 418
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.07 E-value=0.0031 Score=70.44 Aligned_cols=118 Identities=21% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccce-ecCceeEEEecCCceE-EEeecccccccchhhHHHHHHHhHH
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFAT-LDPRLKSVVLPSGRKV-LLSDTVGFISDLPLQLVDAFHATLE 372 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~T-ld~t~~~i~l~~g~~i-~LiDTpG~i~~lp~~lve~f~sTl~ 372 (597)
..+..+-++|+.|+|||.|++++.|....- ...+.+ ...++..+..++.... +|.|..-. . . .+-...+
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~---~----~~l~~ke 493 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-D---Q----DFLTSKE 493 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-c---c----ccccCcc
Confidence 367899999999999999999999976433 222222 2223334444333333 33332211 1 0 1111111
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..||++++++|.+.+........+.+ .... . ...|+++|..|+|+....
T Consensus 494 --~~cDv~~~~YDsS~p~sf~~~a~v~~---~~~~-~-~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 494 --AACDVACLVYDSSNPRSFEYLAEVYN---KYFD-L-YKIPCLMVATKADLDEVP 542 (625)
T ss_pred --ceeeeEEEecccCCchHHHHHHHHHH---Hhhh-c-cCCceEEEeeccccchhh
Confidence 56999999999997754443333322 2221 1 235999999999986554
No 419
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.06 E-value=0.00067 Score=67.30 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 420
>PRK10867 signal recognition particle protein; Provisional
Probab=97.05 E-value=0.0028 Score=69.89 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=40.7
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
+.+++++||+|.... ...+...... +......+-+++|+|+..+ ......+....+.+++ .-+|+||+|
T Consensus 183 ~~DvVIIDTaGrl~~-d~~lm~eL~~-i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i-------~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHI-DEELMDELKA-IKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGL-------TGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCccc-CHHHHHHHHH-HHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCC-------CEEEEeCcc
Confidence 457899999997542 1222222222 2233457778999998653 3333333333334443 357789999
Q ss_pred CC
Q 007583 424 YH 425 (597)
Q Consensus 424 l~ 425 (597)
-.
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 53
No 421
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.05 E-value=0.00067 Score=67.31 Aligned_cols=24 Identities=46% Similarity=0.613 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999975
No 422
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.00096 Score=72.90 Aligned_cols=115 Identities=21% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEe---------------cCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVL---------------PSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l---------------~~g 344 (597)
+++++.++.+...|||||-..|.-..- .-+.....|+..+.-.+.+ .++
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 678999999999999999999974321 1122333444433322221 123
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
.-+.++|.||++... .....+++-.|.++.|+|.-++.+-+....+.+.+.+. + +| ++|+||+|+
T Consensus 98 FLiNLIDSPGHVDFS--------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER-I-----kP-vlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFS--------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-I-----KP-VLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccch--------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh-c-----cc-eEEeehhhH
Confidence 456899999996421 11233456689999999998874443333333444332 2 24 688999997
Q ss_pred C
Q 007583 425 H 425 (597)
Q Consensus 425 ~ 425 (597)
.
T Consensus 163 A 163 (842)
T KOG0469|consen 163 A 163 (842)
T ss_pred H
Confidence 4
No 423
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.03 E-value=0.0018 Score=65.19 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=36.2
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
..+|.++.|+|.|.. .-...+.+.++-.++++ +++.+|+||+|-.
T Consensus 154 ~~vD~vivVvDpS~~-sl~taeri~~L~~elg~-----k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYK-SLRTAERIKELAEELGI-----KRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhCC-----ceEEEEEeeccch
Confidence 458999999998865 45566777788888885 4899999999965
No 424
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.03 E-value=0.0055 Score=65.68 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=41.9
Q ss_pred ceEEEeecccccccchhhHHHHHHHh-HHHHHhcCEEEEEEeCCCCC-------hHHHHHHHHHHHHHc-CCCccCCCcE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHAT-LEEVVEADLLVHVLDCTAPN-------LEEHRTTVLQVLQQV-GVSEEKLKNM 415 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sT-l~~l~~aDliL~VvDas~~~-------~~~~~~~v~~iL~~l-gi~~~~~~P~ 415 (597)
..+.++|..|... ++.. ......++++++|+|.++-. ...........++.+ +-......|+
T Consensus 184 ~~~~~~DvgGqr~---------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pi 254 (342)
T smart00275 184 LFFRMFDVGGQRS---------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSI 254 (342)
T ss_pred eEEEEEecCCchh---------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcE
Confidence 4456788888732 1111 22345689999999998631 011122222233332 2122344699
Q ss_pred EEEEecCCCCCc
Q 007583 416 IEVWNKIDYHDE 427 (597)
Q Consensus 416 IiVlNKiDl~~~ 427 (597)
++++||+|+...
T Consensus 255 il~~NK~D~~~~ 266 (342)
T smart00275 255 ILFLNKIDLFEE 266 (342)
T ss_pred EEEEecHHhHHH
Confidence 999999998754
No 425
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.02 E-value=0.00075 Score=66.62 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999975
No 426
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.02 E-value=0.00078 Score=66.34 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999975
No 427
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0011 Score=64.45 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec--CC-ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--SG-RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~--~g-~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...++++|..|.||||++++.+-... +....+|+.......... .| .++..|||+|..... ...-..
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeF--e~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~g--------glrdgy 79 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEF--EKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKG--------GLRDGY 79 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccc--eecccCcceeEEeeeeeecccCcEEEEeeecccceeec--------cccccc
Confidence 57899999999999999998775431 111122222222222221 12 567899999984221 111112
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+..+.++++++|++....-.....+..-+...-- +.|++++.||.|.-...
T Consensus 80 yI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~----NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 80 YIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE----NIPIVLCGNKVDIKARK 130 (216)
T ss_pred EEecceeEEEeeeeehhhhhcchHHHHHHHHHhc----CCCeeeeccceeccccc
Confidence 3345677888998765333333334333333211 14999999999976554
No 428
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00087 Score=66.18 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 429
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.98 E-value=0.0012 Score=70.39 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=38.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
...|++|||+|+||||++|+|-...+- +...++.| .... .+. --.+|.|||.||.+..
T Consensus 307 qISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET-KVWQ-YIt--LmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 307 QISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET-KVWQ-YIT--LMKRIFLIDCPGVVYP 365 (572)
T ss_pred ceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc-hHHH-HHH--HHhceeEecCCCccCC
Confidence 478999999999999999999987642 22222222 1111 011 1246889999999643
No 430
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.98 E-value=0.0011 Score=69.11 Aligned_cols=62 Identities=29% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC------CcccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
.-+.|-++|.||+|||||+|++.... ..+...++.|.+ ....+.+.....+.++||||.+.+
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~-V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRR-VSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceee-ehhheEeccCCceEEecCCCcCCC
Confidence 34899999999999999999996432 234445555543 344566667778999999999754
No 431
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00093 Score=66.11 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 432
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.96 E-value=0.00094 Score=66.09 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 433
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.96 E-value=0.001 Score=65.81 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999975
No 434
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00097 Score=66.40 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 435
>PRK12288 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.0025 Score=68.47 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+.++|.+++|.+..........+.+.......++ |.++|+||+|+.+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i------~~VIVlNK~DL~~~ 165 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGI------EPLIVLNKIDLLDD 165 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCC------CEEEEEECccCCCc
Confidence 3568999988887644333344444444444443 88999999999754
No 436
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.94 E-value=0.00097 Score=66.25 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 437
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.94 E-value=0.00096 Score=66.33 Aligned_cols=24 Identities=46% Similarity=0.631 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 438
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.0019 Score=65.39 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||.++|.|..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 589999999999999999999987
No 439
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.94 E-value=0.00096 Score=65.87 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 440
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00097 Score=66.92 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999976
No 441
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.94 E-value=0.00095 Score=67.36 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999975
No 442
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.94 E-value=0.0011 Score=65.19 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999975
No 443
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.00092 Score=66.04 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
+++|+|++|||||||++.|+|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999975
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.93 E-value=0.001 Score=66.24 Aligned_cols=90 Identities=30% Similarity=0.451 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEE-------eecccccccchhhHHHHH-H-
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLL-------SDTVGFISDLPLQLVDAF-H- 368 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~L-------iDTpG~i~~lp~~lve~f-~- 368 (597)
-+|+|+|++|||||||+++|.+.. .++.+.+.+ +|..+.. ---.|++.+.+. -| +
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE-----------~~~~G~I~i-~g~~~~~~~~~~~~R~~vGmVFQ~fn----LFPHl 92 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE-----------EPDSGSITV-DGEDVGDKKDILKLRRKVGMVFQQFN----LFPHL 92 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc-----------CCCCceEEE-CCEeccchhhHHHHHHhcCeeccccc----ccccc
Confidence 589999999999999999999987 566666766 5433321 112455432111 11 1
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC
Q 007583 369 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS 408 (597)
Q Consensus 369 sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~ 408 (597)
+.++.+..+-. .|. .....+..+...++|+.+|+.
T Consensus 93 TvleNv~lap~--~v~---~~~k~eA~~~A~~lL~~VGL~ 127 (240)
T COG1126 93 TVLENVTLAPV--KVK---KLSKAEAREKALELLEKVGLA 127 (240)
T ss_pred hHHHHHHhhhH--HHc---CCCHHHHHHHHHHHHHHcCch
Confidence 12233222221 111 112456667778888888874
No 445
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.93 E-value=0.00098 Score=66.46 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 446
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.93 E-value=0.00098 Score=66.25 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 447
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.0011 Score=66.09 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 448
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.92 E-value=0.001 Score=66.65 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 449
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.0011 Score=66.70 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999975
No 450
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.92 E-value=0.0011 Score=64.85 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 451
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0012 Score=63.74 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 452
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.91 E-value=0.0011 Score=64.87 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999976
No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.011 Score=55.54 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|+|||||++.|.|..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 454
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.89 E-value=0.0011 Score=65.71 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999975
No 455
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.89 E-value=0.0012 Score=66.10 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999999975
No 456
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.0011 Score=66.69 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999975
No 457
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0012 Score=66.64 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 458
>PRK10908 cell division protein FtsE; Provisional
Probab=96.88 E-value=0.0013 Score=65.56 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 459
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.88 E-value=0.0013 Score=64.82 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999975
No 460
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0011 Score=67.78 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999976
No 461
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.87 E-value=0.0013 Score=66.29 Aligned_cols=24 Identities=46% Similarity=0.472 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999975
No 462
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.87 E-value=0.0013 Score=64.60 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999975
No 463
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.86 E-value=0.0013 Score=63.79 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999976
No 464
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.85 E-value=0.0013 Score=69.11 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 465
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.85 E-value=0.0044 Score=65.62 Aligned_cols=47 Identities=36% Similarity=0.429 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPS 343 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~ 343 (597)
-|++.+||++++|||||.+.|++..+. ....+|..+|+..+.+.+|+
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPG 150 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPG 150 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceeccc
Confidence 499999999999999999999875532 23345666777666555544
No 466
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.85 E-value=0.0012 Score=66.33 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999975
No 467
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.84 E-value=0.0014 Score=64.79 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 468
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.84 E-value=0.0011 Score=65.61 Aligned_cols=24 Identities=42% Similarity=0.457 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999975
No 469
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.84 E-value=0.0013 Score=69.03 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|+||||||||++.|+|..
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999976
No 470
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.83 E-value=0.0014 Score=64.61 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999976
No 471
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.83 E-value=0.0014 Score=66.17 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 472
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.83 E-value=0.0014 Score=64.03 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV 347 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i 347 (597)
-.+-++||+|||||||++.|.+.. .|+.+.+.+ ++.++
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e-----------~pt~G~i~~-~~~dl 66 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEE-----------RPTRGKILV-NGHDL 66 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhh-----------cCCCceEEE-CCeec
Confidence 478899999999999999999987 677777776 55444
No 473
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0016 Score=62.52 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 474
>PRK13796 GTPase YqeH; Provisional
Probab=96.81 E-value=0.0055 Score=66.29 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHhHHHHHhcC-EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 366 AFHATLEEVVEAD-LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 366 ~f~sTl~~l~~aD-liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.|..++.++..+| ++++|+|+.+.. ... ...+.++.- .+|+++|+||+|+.+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-~s~----~~~L~~~~~----~kpviLViNK~DLl~ 110 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-GSW----IPGLHRFVG----NNPVLLVGNKADLLP 110 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-Cch----hHHHHHHhC----CCCEEEEEEchhhCC
Confidence 5666788888777 999999998752 111 122222211 248999999999975
No 475
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0013 Score=70.46 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+||+||||||||++|.|..
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999987
No 476
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.0059 Score=66.82 Aligned_cols=163 Identities=18% Similarity=0.236 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHc----CC--Ccc-ccc
Q 007583 255 QLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSD----SD--LFS-DAR 327 (597)
Q Consensus 255 e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g----~~--v~~-~~~ 327 (597)
.+.+..+++.+.+|.---..+.-.|..++.+|.+ ++.+|++||-+|+||||=+-.|+- .. +.+ ...
T Consensus 343 ~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~~k-------rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACD 415 (587)
T KOG0781|consen 343 STVKEALRDALVQILTPQRSVDLLRDIMSARRRK-------RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACD 415 (587)
T ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-------CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEecc
Confidence 3456666666665532111222333334443332 578999999999999999888762 11 110 000
Q ss_pred cc---------------ceecCceeEE-------------------EecCCceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 328 LF---------------ATLDPRLKSV-------------------VLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 328 ~f---------------~Tld~t~~~i-------------------~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
.| ..+.++.-.+ .-.+|.+++|+||+|-+.+.+.-+. +. ..+..
T Consensus 416 TFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~-~l-~k~~~ 493 (587)
T KOG0781|consen 416 TFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMT-SL-AKLIK 493 (587)
T ss_pred chhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHH-HH-HHHHh
Confidence 11 0000000000 0024678999999999876544322 21 22344
Q ss_pred HHhcCEEEEEEeCCCC-ChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 374 VVEADLLVHVLDCTAP-NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 374 l~~aDliL~VvDas~~-~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
+...|.+++|-.+--+ +.-.+.....+.|....-+.. ---++++|+|-+++.-
T Consensus 494 ~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~---id~~~ltk~dtv~d~v 547 (587)
T KOG0781|consen 494 VNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRL---IDGILLTKFDTVDDKV 547 (587)
T ss_pred cCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccc---cceEEEEeccchhhHH
Confidence 5668999999776433 234555555566655442111 1247899999987653
No 477
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0015 Score=66.09 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999975
No 478
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.79 E-value=0.0015 Score=65.78 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999976
No 479
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0015 Score=67.53 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 480
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0016 Score=64.35 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999976
No 481
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0015 Score=67.44 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999975
No 482
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.77 E-value=0.0016 Score=71.21 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|+||||||||++.|+|..
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 589999999999999999999975
No 483
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.77 E-value=0.0017 Score=65.90 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999975
No 484
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0016 Score=67.09 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999976
No 485
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0016 Score=65.80 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 486
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.77 E-value=0.0017 Score=64.59 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 487
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.76 E-value=0.0015 Score=65.39 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999976
No 488
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0017 Score=64.43 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999975
No 489
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0016 Score=67.91 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999976
No 490
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0015 Score=67.95 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999976
No 491
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0016 Score=65.87 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 492
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0032 Score=65.70 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL 341 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l 341 (597)
-.+|++|++|||||||++.|.|.. .|+.+.+.+
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGLe-----------~p~~G~I~~ 61 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGLE-----------TPDAGRIRL 61 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCcC-----------CCCCceEEE
Confidence 589999999999999999999987 566666666
No 493
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.75 E-value=0.0017 Score=64.14 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 494
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0017 Score=67.24 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999975
No 495
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.74 E-value=0.0018 Score=65.39 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 496
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.74 E-value=0.0017 Score=68.15 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 497
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.0017 Score=67.24 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999975
No 498
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.73 E-value=0.0019 Score=62.51 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|+|||||++.|+|..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999975
No 499
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.73 E-value=0.0016 Score=64.95 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.|.|+|.+|||||||+|+|+|..
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCcc
Confidence 478999999999999999999976
No 500
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.72 E-value=0.0019 Score=62.06 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|+|||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 589999999999999999999975
Done!