Query 007583
Match_columns 597
No_of_seqs 651 out of 4488
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qtf_A Protein HFLX, GTP-bindi 100.0 1.1E-58 3.6E-63 493.9 27.4 295 78-427 10-307 (364)
2 3gee_A MNME, tRNA modification 99.9 4.3E-22 1.5E-26 218.8 15.9 221 172-427 135-358 (476)
3 1xzp_A Probable tRNA modificat 99.8 2.2E-21 7.6E-26 213.4 12.9 213 172-426 147-364 (482)
4 2e87_A Hypothetical protein PH 99.8 5.1E-19 1.7E-23 187.2 19.8 168 248-426 119-294 (357)
5 4a9a_A Ribosome-interacting GT 99.8 1.6E-19 5.5E-24 192.4 14.0 164 256-426 33-196 (376)
6 3iev_A GTP-binding protein ERA 99.8 2.3E-18 7.8E-23 178.8 19.7 125 296-426 9-136 (308)
7 1lnz_A SPO0B-associated GTP-bi 99.8 7.7E-19 2.6E-23 185.3 14.0 126 297-426 158-288 (342)
8 3geh_A MNME, tRNA modification 99.8 1E-18 3.4E-23 191.4 13.9 150 257-427 193-345 (462)
9 3tr5_A RF-3, peptide chain rel 99.8 1.2E-19 4.1E-24 201.8 6.6 235 297-564 13-277 (528)
10 2xex_A Elongation factor G; GT 99.8 5.3E-19 1.8E-23 202.6 11.9 245 296-564 9-280 (693)
11 2rdo_7 EF-G, elongation factor 99.8 1.7E-18 5.7E-23 198.7 15.4 246 296-564 9-288 (704)
12 2gj8_A MNME, tRNA modification 99.8 5.1E-18 1.7E-22 160.1 15.6 124 297-425 4-128 (172)
13 4dhe_A Probable GTP-binding pr 99.8 2.5E-18 8.6E-23 167.5 13.4 126 296-428 28-160 (223)
14 3vqt_A RF-3, peptide chain rel 99.8 8.4E-19 2.9E-23 195.8 10.0 234 297-564 31-295 (548)
15 1dar_A EF-G, elongation factor 99.8 9.5E-19 3.2E-23 200.4 10.7 246 296-564 11-282 (691)
16 1wf3_A GTP-binding protein; GT 99.7 7.7E-18 2.6E-22 174.6 15.1 124 297-427 7-132 (301)
17 2wji_A Ferrous iron transport 99.7 2.3E-17 7.8E-22 154.0 16.1 119 297-425 3-121 (165)
18 2dyk_A GTP-binding protein; GT 99.7 3.9E-17 1.3E-21 149.8 17.3 119 298-426 2-122 (161)
19 3iby_A Ferrous iron transport 99.7 2.2E-18 7.4E-23 174.6 9.6 119 298-426 2-124 (256)
20 1mky_A Probable GTP-binding pr 99.7 1.1E-17 3.9E-22 181.6 15.6 120 298-425 2-123 (439)
21 3i8s_A Ferrous iron transport 99.7 5E-18 1.7E-22 173.3 9.7 120 297-426 3-126 (274)
22 2lkc_A Translation initiation 99.7 3.8E-17 1.3E-21 152.6 14.8 117 295-427 6-122 (178)
23 3a1s_A Iron(II) transport prot 99.7 2.6E-17 8.9E-22 166.7 14.3 120 297-426 5-124 (258)
24 3pqc_A Probable GTP-binding pr 99.7 1.1E-16 3.6E-21 151.5 17.1 122 295-427 21-148 (195)
25 3j25_A Tetracycline resistance 99.7 2.2E-18 7.6E-23 195.7 6.5 219 297-564 2-239 (638)
26 3tkl_A RAS-related protein RAB 99.7 6.9E-17 2.4E-21 153.5 15.7 120 296-427 15-136 (196)
27 2hjg_A GTP-binding protein ENG 99.7 6E-17 2.1E-21 175.8 17.3 124 296-427 174-301 (436)
28 2h5e_A Peptide chain release f 99.7 6.8E-18 2.3E-22 187.7 9.9 231 297-564 13-278 (529)
29 4dcu_A GTP-binding protein ENG 99.7 1E-16 3.5E-21 175.0 18.1 124 296-427 194-321 (456)
30 2qu8_A Putative nucleolar GTP- 99.7 1.1E-16 3.9E-21 157.4 16.4 129 296-427 28-157 (228)
31 3tw8_B RAS-related protein RAB 99.7 3.4E-17 1.2E-21 152.9 11.9 118 296-426 8-127 (181)
32 3k53_A Ferrous iron transport 99.7 4.1E-17 1.4E-21 165.7 12.7 121 297-426 3-123 (271)
33 4fn5_A EF-G 1, elongation fact 99.7 2.4E-17 8.2E-22 189.4 12.1 247 296-564 12-291 (709)
34 3q85_A GTP-binding protein REM 99.7 1.2E-16 4.2E-21 147.9 14.5 120 297-426 2-123 (169)
35 2hjg_A GTP-binding protein ENG 99.7 3.6E-17 1.2E-21 177.6 12.7 121 297-426 3-125 (436)
36 2nzj_A GTP-binding protein REM 99.7 2.2E-16 7.4E-21 146.8 16.2 122 296-427 3-126 (175)
37 1ky3_A GTP-binding protein YPT 99.7 1.2E-16 4.3E-21 149.1 14.4 122 296-426 7-132 (182)
38 3b1v_A Ferrous iron uptake tra 99.7 2.3E-17 7.7E-22 168.7 9.6 119 297-426 3-121 (272)
39 1mky_A Probable GTP-binding pr 99.7 2E-16 6.8E-21 171.9 16.9 124 296-427 179-307 (439)
40 1zj6_A ADP-ribosylation factor 99.7 4E-16 1.4E-20 147.9 16.9 115 297-426 16-131 (187)
41 1z0f_A RAB14, member RAS oncog 99.7 3.3E-16 1.1E-20 145.9 16.0 120 296-426 14-134 (179)
42 2fu5_C RAS-related protein RAB 99.7 5.1E-17 1.8E-21 152.9 10.6 117 297-426 8-127 (183)
43 2g6b_A RAS-related protein RAB 99.7 2.6E-16 8.8E-21 147.2 15.3 118 296-426 9-130 (180)
44 2il1_A RAB12; G-protein, GDP, 99.7 1.2E-16 4.1E-21 152.8 13.2 118 297-426 26-145 (192)
45 1svi_A GTP-binding protein YSX 99.7 3.6E-16 1.2E-20 148.6 16.5 121 296-427 22-149 (195)
46 3clv_A RAB5 protein, putative; 99.7 3.8E-16 1.3E-20 147.9 16.5 113 296-423 6-158 (208)
47 2wjg_A FEOB, ferrous iron tran 99.7 1.5E-16 5E-21 150.4 13.6 121 296-426 6-126 (188)
48 1ksh_A ARF-like protein 2; sma 99.7 3.4E-16 1.2E-20 147.9 16.0 116 296-427 17-134 (186)
49 1z0j_A RAB-22, RAS-related pro 99.7 2.7E-16 9.1E-21 145.3 14.8 119 297-426 6-125 (170)
50 3cph_A RAS-related protein SEC 99.7 2E-16 6.9E-21 152.4 14.6 117 296-424 19-137 (213)
51 2efe_B Small GTP-binding prote 99.7 2.8E-16 9.5E-21 147.1 15.0 120 297-427 12-132 (181)
52 1r2q_A RAS-related protein RAB 99.7 1.9E-16 6.6E-21 145.9 13.7 119 297-426 6-125 (170)
53 1g16_A RAS-related protein SEC 99.7 1.4E-16 4.9E-21 147.1 12.6 116 297-424 3-120 (170)
54 1upt_A ARL1, ADP-ribosylation 99.7 3.1E-16 1.1E-20 145.2 14.7 117 296-427 6-123 (171)
55 2f7s_A C25KG, RAS-related prot 99.7 6.1E-16 2.1E-20 150.2 17.4 119 296-426 24-155 (217)
56 1zd9_A ADP-ribosylation factor 99.7 4.4E-16 1.5E-20 148.2 16.1 117 296-427 21-139 (188)
57 4dsu_A GTPase KRAS, isoform 2B 99.7 4.1E-16 1.4E-20 146.8 15.7 118 297-426 4-123 (189)
58 2bme_A RAB4A, RAS-related prot 99.7 2.8E-16 9.5E-21 148.0 14.5 119 296-426 9-129 (186)
59 4bas_A ADP-ribosylation factor 99.7 2E-16 6.9E-21 150.6 13.5 122 296-427 16-142 (199)
60 3bc1_A RAS-related protein RAB 99.7 3.7E-16 1.3E-20 147.3 15.2 121 296-426 10-141 (195)
61 2hxs_A RAB-26, RAS-related pro 99.7 7.9E-17 2.7E-21 150.4 10.4 122 296-426 5-129 (178)
62 1ek0_A Protein (GTP-binding pr 99.7 2.2E-16 7.4E-21 145.6 13.2 119 298-427 4-123 (170)
63 3q72_A GTP-binding protein RAD 99.7 2.1E-16 7.2E-21 145.9 13.0 117 297-427 2-121 (166)
64 1u8z_A RAS-related protein RAL 99.7 5E-16 1.7E-20 142.6 15.2 117 297-426 4-123 (168)
65 1r8s_A ADP-ribosylation factor 99.7 5.4E-16 1.9E-20 142.8 15.3 113 299-426 2-115 (164)
66 2bcg_Y Protein YP2, GTP-bindin 99.7 3.1E-16 1.1E-20 151.0 14.3 120 296-427 7-128 (206)
67 1c1y_A RAS-related protein RAP 99.7 4.6E-16 1.6E-20 143.2 14.5 117 297-426 3-122 (167)
68 1wms_A RAB-9, RAB9, RAS-relate 99.7 5.5E-16 1.9E-20 144.6 14.9 121 296-425 6-129 (177)
69 1z2a_A RAS-related protein RAB 99.7 2.5E-16 8.5E-21 145.2 12.4 119 296-426 4-123 (168)
70 2dy1_A Elongation factor G; tr 99.7 4.5E-17 1.6E-21 185.8 9.0 242 296-564 8-274 (665)
71 1zbd_A Rabphilin-3A; G protein 99.7 6.4E-16 2.2E-20 148.2 15.6 119 297-426 8-127 (203)
72 2oil_A CATX-8, RAS-related pro 99.7 3.7E-16 1.3E-20 148.7 13.7 120 296-426 24-144 (193)
73 2h57_A ADP-ribosylation factor 99.7 3.1E-16 1.1E-20 149.1 13.0 120 296-426 20-140 (190)
74 2bov_A RAla, RAS-related prote 99.7 1.4E-15 4.7E-20 145.6 17.6 119 296-426 13-133 (206)
75 2www_A Methylmalonic aciduria 99.7 2E-16 6.8E-21 167.2 12.7 145 254-426 25-226 (349)
76 1z08_A RAS-related protein RAB 99.7 2.8E-16 9.4E-21 145.4 12.2 119 296-426 5-125 (170)
77 3dz8_A RAS-related protein RAB 99.7 4.5E-16 1.6E-20 148.3 13.9 120 296-426 22-142 (191)
78 2fn4_A P23, RAS-related protei 99.7 5.4E-16 1.8E-20 144.7 14.1 118 296-426 8-128 (181)
79 4dcu_A GTP-binding protein ENG 99.7 1.5E-16 5E-21 173.8 11.9 122 296-426 22-145 (456)
80 2iwr_A Centaurin gamma 1; ANK 99.7 8.6E-16 2.9E-20 143.8 15.5 115 296-426 6-122 (178)
81 2y8e_A RAB-protein 6, GH09086P 99.7 3.2E-16 1.1E-20 145.9 12.5 118 297-426 14-133 (179)
82 2erx_A GTP-binding protein DI- 99.7 5.3E-16 1.8E-20 143.2 13.8 119 297-426 3-123 (172)
83 1moz_A ARL1, ADP-ribosylation 99.7 2.1E-16 7.3E-21 148.4 11.1 116 296-426 17-133 (183)
84 2a5j_A RAS-related protein RAB 99.7 4.5E-16 1.5E-20 148.3 13.5 119 296-426 20-140 (191)
85 2o52_A RAS-related protein RAB 99.7 6.4E-16 2.2E-20 148.9 14.6 118 296-426 24-144 (200)
86 1kao_A RAP2A; GTP-binding prot 99.7 8E-16 2.7E-20 141.1 14.5 117 297-426 3-122 (167)
87 2p5s_A RAS and EF-hand domain 99.7 3.7E-16 1.3E-20 150.0 12.7 119 296-426 27-147 (199)
88 1wb1_A Translation elongation 99.7 4.6E-16 1.6E-20 171.2 15.0 115 296-426 18-139 (482)
89 2b6h_A ADP-ribosylation factor 99.7 9.6E-16 3.3E-20 146.9 15.4 116 296-426 28-144 (192)
90 2fg5_A RAB-22B, RAS-related pr 99.7 6.3E-16 2.2E-20 147.6 14.1 119 297-426 23-142 (192)
91 1fzq_A ADP-ribosylation factor 99.7 1.2E-15 4.1E-20 144.7 15.8 117 296-427 15-132 (181)
92 2ew1_A RAS-related protein RAB 99.7 5.2E-16 1.8E-20 150.6 13.6 119 296-426 25-145 (201)
93 2a9k_A RAS-related protein RAL 99.7 2E-15 6.8E-20 141.5 17.2 117 297-426 18-137 (187)
94 3sjy_A Translation initiation 99.7 3.4E-16 1.2E-20 168.2 13.3 120 296-428 7-145 (403)
95 1f6b_A SAR1; gtpases, N-termin 99.7 4.1E-16 1.4E-20 150.3 12.6 115 297-426 25-140 (198)
96 1x3s_A RAS-related protein RAB 99.7 6.3E-16 2.2E-20 146.4 13.5 118 297-425 15-134 (195)
97 1ega_A Protein (GTP-binding pr 99.7 2.2E-16 7.5E-21 163.4 11.0 121 297-426 8-130 (301)
98 1vg8_A RAS-related protein RAB 99.7 6.1E-16 2.1E-20 148.4 13.3 122 296-425 7-130 (207)
99 3j2k_7 ERF3, eukaryotic polype 99.7 1E-15 3.5E-20 166.6 16.5 118 296-427 16-170 (439)
100 2hup_A RAS-related protein RAB 99.7 1.3E-15 4.4E-20 147.0 15.3 118 297-426 29-148 (201)
101 3kkq_A RAS-related protein M-R 99.7 1.9E-15 6.6E-20 142.1 16.1 118 296-426 17-137 (183)
102 2gf9_A RAS-related protein RAB 99.6 4.2E-16 1.4E-20 148.0 11.4 120 296-426 21-141 (189)
103 2gf0_A GTP-binding protein DI- 99.6 1.6E-15 5.3E-20 144.4 15.4 120 296-426 7-128 (199)
104 1z06_A RAS-related protein RAB 99.6 1.9E-15 6.5E-20 143.5 15.9 119 296-426 19-141 (189)
105 2h17_A ADP-ribosylation factor 99.6 6E-16 2.1E-20 146.1 12.3 116 296-426 20-136 (181)
106 1kk1_A EIF2gamma; initiation o 99.6 1.1E-15 3.6E-20 164.7 15.8 119 296-427 9-152 (410)
107 1s0u_A EIF-2-gamma, translatio 99.6 1.4E-15 4.8E-20 163.7 16.5 119 296-428 7-151 (408)
108 2ce2_X GTPase HRAS; signaling 99.6 3E-15 1E-19 136.9 16.2 117 298-426 4-122 (166)
109 4djt_A GTP-binding nuclear pro 99.6 3.4E-16 1.2E-20 152.0 10.4 119 296-427 10-132 (218)
110 1mh1_A RAC1; GTP-binding, GTPa 99.6 2.6E-16 8.8E-21 147.7 9.2 117 297-427 5-124 (186)
111 3qq5_A Small GTP-binding prote 99.6 1.6E-16 5.6E-21 171.9 8.8 122 296-427 33-155 (423)
112 3con_A GTPase NRAS; structural 99.6 2.8E-15 9.6E-20 142.0 16.1 118 297-426 21-140 (190)
113 2xtp_A GTPase IMAP family memb 99.6 7.5E-16 2.6E-20 154.7 12.8 126 296-426 21-153 (260)
114 3cpj_B GTP-binding protein YPT 99.6 7.6E-16 2.6E-20 150.9 11.7 119 296-426 12-132 (223)
115 1g7s_A Translation initiation 99.6 1.5E-16 5.2E-21 179.0 7.4 117 296-427 4-137 (594)
116 2fh5_B SR-beta, signal recogni 99.6 4E-15 1.4E-19 144.1 16.3 117 297-428 7-131 (214)
117 1m2o_B GTP-binding protein SAR 99.6 1.1E-15 3.8E-20 146.1 12.1 114 298-426 24-138 (190)
118 2x77_A ADP-ribosylation factor 99.6 1.9E-15 6.5E-20 143.3 13.6 117 296-427 21-138 (189)
119 3oes_A GTPase rhebl1; small GT 99.6 3.8E-16 1.3E-20 150.2 8.6 119 296-426 23-143 (201)
120 3cbq_A GTP-binding protein REM 99.6 2.7E-15 9.1E-20 144.4 14.5 121 296-426 22-144 (195)
121 3izy_P Translation initiation 99.6 2.4E-17 8.3E-22 183.1 0.0 117 296-427 3-119 (537)
122 2yc2_C IFT27, small RAB-relate 99.6 6.9E-16 2.4E-20 147.7 10.1 121 297-426 20-146 (208)
123 2atv_A RERG, RAS-like estrogen 99.6 2.9E-15 9.9E-20 143.2 14.4 117 297-426 28-146 (196)
124 2q3h_A RAS homolog gene family 99.6 1E-15 3.5E-20 146.6 10.7 118 296-427 19-139 (201)
125 3lxw_A GTPase IMAP family memb 99.6 1.2E-15 4E-20 153.4 11.5 127 296-426 20-153 (247)
126 3reg_A RHO-like small GTPase; 99.6 1.5E-15 5.3E-20 144.7 11.7 117 297-427 23-142 (194)
127 3t5g_A GTP-binding protein RHE 99.6 1.3E-15 4.3E-20 143.1 10.9 118 296-426 5-125 (181)
128 2gco_A H9, RHO-related GTP-bin 99.6 1.7E-15 5.7E-20 145.9 11.9 118 297-428 25-145 (201)
129 3ihw_A Centg3; RAS, centaurin, 99.6 6.4E-15 2.2E-19 140.3 15.8 112 296-426 19-133 (184)
130 4gzl_A RAS-related C3 botulinu 99.6 8.4E-16 2.9E-20 148.7 9.6 118 297-428 30-150 (204)
131 3t1o_A Gliding protein MGLA; G 99.6 5.4E-15 1.8E-19 139.8 14.6 122 296-426 13-149 (198)
132 1jwy_B Dynamin A GTPase domain 99.6 2.1E-15 7.2E-20 155.4 12.7 126 296-427 23-213 (315)
133 2j1l_A RHO-related GTP-binding 99.6 3E-15 1E-19 145.8 12.9 117 297-428 34-154 (214)
134 2atx_A Small GTP binding prote 99.6 2.8E-15 9.5E-20 142.7 12.2 118 297-428 18-138 (194)
135 3lvq_E ARF-GAP with SH3 domain 99.6 2.2E-15 7.4E-20 165.7 13.0 116 296-426 321-437 (497)
136 3l0i_B RAS-related protein RAB 99.6 5.9E-17 2E-21 155.6 0.3 120 296-427 32-153 (199)
137 2fv8_A H6, RHO-related GTP-bin 99.6 1.3E-15 4.5E-20 147.3 9.6 116 298-427 26-144 (207)
138 3p26_A Elongation factor 1 alp 99.6 1.1E-15 3.7E-20 168.1 10.0 117 296-426 32-185 (483)
139 3c5c_A RAS-like protein 12; GD 99.6 2.8E-15 9.5E-20 142.9 11.4 120 296-426 20-141 (187)
140 3t5d_A Septin-7; GTP-binding p 99.6 1.7E-15 5.9E-20 154.1 9.9 125 297-428 8-160 (274)
141 3q3j_B RHO-related GTP-binding 99.6 1.8E-15 6.2E-20 147.7 9.7 117 297-427 27-146 (214)
142 3llu_A RAS-related GTP-binding 99.6 5.8E-15 2E-19 141.5 12.8 123 296-428 19-145 (196)
143 3o47_A ADP-ribosylation factor 99.6 5.8E-15 2E-19 154.6 13.8 115 297-427 165-281 (329)
144 2cxx_A Probable GTP-binding pr 99.6 8.6E-15 2.9E-19 138.0 13.0 117 298-427 2-137 (190)
145 2aka_B Dynamin-1; fusion prote 99.6 1E-14 3.6E-19 148.7 14.4 126 296-427 25-207 (299)
146 1udx_A The GTP-binding protein 99.6 7.9E-15 2.7E-19 158.4 13.3 126 297-427 157-284 (416)
147 3bwd_D RAC-like GTP-binding pr 99.6 2.1E-15 7.1E-20 141.3 7.6 118 296-427 7-127 (182)
148 1zo1_I IF2, translation initia 99.6 3.8E-16 1.3E-20 172.2 2.7 116 296-427 3-118 (501)
149 2j69_A Bacterial dynamin-like 99.6 4E-14 1.4E-18 162.2 19.1 121 296-427 68-245 (695)
150 2j0v_A RAC-like GTP-binding pr 99.6 5.1E-15 1.8E-19 143.1 9.9 118 296-427 8-128 (212)
151 2elf_A Protein translation elo 99.6 1.1E-14 3.8E-19 155.0 13.4 102 298-424 22-125 (370)
152 2c78_A Elongation factor TU-A; 99.6 5.2E-15 1.8E-19 159.0 10.3 115 296-426 10-142 (405)
153 3r7w_A Gtpase1, GTP-binding pr 99.6 3.7E-14 1.3E-18 146.9 16.0 124 298-427 4-130 (307)
154 3izq_1 HBS1P, elongation facto 99.6 2E-15 7E-20 170.5 6.9 117 296-426 166-319 (611)
155 2wkq_A NPH1-1, RAS-related C3 99.6 2.3E-14 7.8E-19 147.6 14.2 117 297-427 155-274 (332)
156 4dkx_A RAS-related protein RAB 99.6 1.7E-14 5.7E-19 142.4 12.4 117 298-426 14-132 (216)
157 3gj0_A GTP-binding nuclear pro 99.5 7.2E-15 2.5E-19 143.3 8.6 117 296-426 14-133 (221)
158 1zun_B Sulfate adenylate trans 99.5 1.1E-14 3.7E-19 158.0 10.2 116 296-426 23-171 (434)
159 2ywe_A GTP-binding protein LEP 99.5 2.6E-14 8.9E-19 160.7 13.5 117 296-427 5-140 (600)
160 2cjw_A GTP-binding protein GEM 99.5 6.1E-14 2.1E-18 134.5 14.3 121 296-426 5-128 (192)
161 3cb4_D GTP-binding protein LEP 99.5 3.4E-14 1.2E-18 159.9 14.1 117 296-427 3-138 (599)
162 2g3y_A GTP-binding protein GEM 99.5 9E-14 3.1E-18 136.6 15.3 121 296-426 36-159 (211)
163 1d2e_A Elongation factor TU (E 99.5 2.5E-14 8.4E-19 153.5 12.2 114 297-426 3-133 (397)
164 3th5_A RAS-related C3 botulinu 99.3 6.8E-16 2.3E-20 148.6 0.0 118 297-428 30-150 (204)
165 1m7b_A RND3/RHOE small GTP-bin 99.5 1.4E-14 4.6E-19 137.2 8.9 119 296-427 6-126 (184)
166 2zej_A Dardarin, leucine-rich 99.5 6.2E-14 2.1E-18 133.0 13.1 118 298-427 3-127 (184)
167 3lxx_A GTPase IMAP family memb 99.5 3.9E-14 1.3E-18 140.5 11.7 129 296-428 28-161 (239)
168 3zvr_A Dynamin-1; hydrolase, D 99.5 3.9E-14 1.3E-18 162.6 12.8 127 296-428 50-233 (772)
169 1pui_A ENGB, probable GTP-bind 99.5 1.4E-13 4.6E-18 132.6 13.6 121 296-427 25-152 (210)
170 2f9l_A RAB11B, member RAS onco 99.5 2.6E-13 8.7E-18 130.3 14.8 118 297-426 5-124 (199)
171 1gwn_A RHO-related GTP-binding 99.5 3.7E-14 1.3E-18 137.8 8.7 116 297-426 28-146 (205)
172 1f60_A Elongation factor EEF1A 99.5 1.2E-14 4.1E-19 159.0 4.9 117 296-426 6-159 (458)
173 3mca_A HBS1, elongation factor 99.5 1.5E-15 5E-20 171.2 -2.7 118 295-426 175-329 (592)
174 3dpu_A RAB family protein; roc 99.5 6E-14 2E-18 156.0 10.3 115 296-427 40-165 (535)
175 1r5b_A Eukaryotic peptide chai 99.5 5.5E-14 1.9E-18 154.0 9.7 116 296-426 42-195 (467)
176 1jny_A EF-1-alpha, elongation 99.5 6.9E-14 2.4E-18 151.8 10.3 118 296-427 5-159 (435)
177 2x2e_A Dynamin-1; nitration, h 99.5 7.6E-14 2.6E-18 147.3 9.4 126 296-427 30-212 (353)
178 3avx_A Elongation factor TS, e 99.4 2.5E-13 8.5E-18 160.5 13.4 115 296-426 295-426 (1289)
179 3def_A T7I23.11 protein; chlor 99.4 8.5E-13 2.9E-17 133.3 15.5 128 296-428 35-167 (262)
180 2p67_A LAO/AO transport system 99.4 1.1E-13 3.8E-18 145.6 8.8 148 254-427 17-209 (341)
181 3p32_A Probable GTPase RV1496/ 99.4 1.1E-13 3.6E-18 146.4 8.5 28 538-565 258-285 (355)
182 1oix_A RAS-related protein RAB 99.4 1.1E-12 3.7E-17 125.5 14.0 118 297-426 29-148 (191)
183 1nrj_B SR-beta, signal recogni 99.4 6.3E-13 2.2E-17 128.9 11.4 125 296-429 11-137 (218)
184 3t34_A Dynamin-related protein 99.4 1.6E-12 5.5E-17 137.3 15.2 129 296-429 33-220 (360)
185 1h65_A Chloroplast outer envel 99.4 4.8E-12 1.7E-16 128.2 17.2 130 296-429 38-171 (270)
186 2ged_A SR-beta, signal recogni 99.4 5.9E-13 2E-17 126.3 9.4 125 296-429 47-173 (193)
187 2wsm_A Hydrogenase expression/ 99.4 5.7E-13 2E-17 129.6 9.5 28 538-565 188-215 (221)
188 2qpt_A EH domain-containing pr 99.4 1.2E-12 4.1E-17 146.3 10.9 126 295-429 63-235 (550)
189 2qm8_A GTPase/ATPase; G protei 99.3 6.1E-12 2.1E-16 132.2 12.7 27 539-565 236-262 (337)
190 1wxq_A GTP-binding protein; st 99.3 2.2E-12 7.7E-17 138.5 9.3 88 299-389 2-114 (397)
191 3c5h_A Glucocorticoid receptor 99.3 1.4E-12 4.6E-17 131.4 4.9 26 538-563 229-254 (255)
192 2qag_A Septin-2, protein NEDD5 99.2 1.2E-11 4.2E-16 131.1 10.2 124 297-427 37-189 (361)
193 1yrb_A ATP(GTP)binding protein 99.2 1.1E-11 3.9E-16 123.7 9.1 28 538-565 231-258 (262)
194 1jal_A YCHF protein; nucleotid 99.2 3.2E-11 1.1E-15 127.9 12.9 88 298-388 3-108 (363)
195 2hf9_A Probable hydrogenase ni 99.2 6.4E-11 2.2E-15 115.5 9.8 28 538-565 198-225 (226)
196 2dby_A GTP-binding protein; GD 99.1 8.1E-11 2.8E-15 125.2 10.4 88 298-388 2-111 (368)
197 3r7w_B Gtpase2, GTP-binding pr 99.1 2.5E-10 8.7E-15 119.3 9.7 121 299-428 1-122 (331)
198 1n0u_A EF-2, elongation factor 99.1 9.2E-11 3.2E-15 137.1 7.0 116 296-426 18-164 (842)
199 2ohf_A Protein OLA1, GTP-bindi 99.0 5.3E-10 1.8E-14 119.7 7.5 90 297-388 22-128 (396)
200 2j37_W Signal recognition part 98.9 9.4E-10 3.2E-14 121.4 8.5 119 296-426 100-254 (504)
201 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3.2E-09 1.1E-13 113.7 9.9 89 297-388 20-127 (392)
202 2qnr_A Septin-2, protein NEDD5 98.8 8.9E-09 3.1E-13 106.3 11.1 124 297-427 18-170 (301)
203 2qag_B Septin-6, protein NEDD5 98.7 2.2E-08 7.6E-13 108.1 9.5 124 297-429 42-193 (427)
204 2qag_C Septin-7; cell cycle, c 98.7 6E-08 2.1E-12 104.7 11.6 123 298-428 32-183 (418)
205 3ec1_A YQEH GTPase; atnos1, at 98.7 1E-09 3.5E-14 116.7 -3.0 118 298-429 163-291 (369)
206 1tq4_A IIGP1, interferon-induc 98.7 1E-07 3.5E-12 102.7 12.4 117 297-425 69-188 (413)
207 3h2y_A GTPase family protein; 98.7 2E-09 6.9E-14 114.4 -1.1 121 298-429 161-290 (368)
208 3sop_A Neuronal-specific septi 98.6 8.5E-08 2.9E-12 97.6 9.8 123 298-430 3-158 (270)
209 2v3c_C SRP54, signal recogniti 98.4 1.6E-08 5.4E-13 109.7 -2.2 120 297-426 99-252 (432)
210 1puj_A YLQF, conserved hypothe 98.4 4.5E-07 1.6E-11 92.8 8.7 59 296-358 119-178 (282)
211 1f5n_A Interferon-induced guan 98.4 4.9E-07 1.7E-11 101.4 9.1 61 296-357 37-103 (592)
212 1cip_A Protein (guanine nucleo 98.4 2.7E-07 9.1E-12 97.5 5.7 76 343-426 191-274 (353)
213 3ohm_A Guanine nucleotide-bind 98.3 1.7E-06 5.6E-11 90.5 11.3 76 343-427 165-249 (327)
214 3szr_A Interferon-induced GTP- 98.3 1.5E-06 5.1E-11 98.1 10.8 127 296-428 44-230 (608)
215 1puj_A YLQF, conserved hypothe 98.2 1.2E-06 4.1E-11 89.6 7.3 60 359-427 6-65 (282)
216 3dm5_A SRP54, signal recogniti 98.1 1E-05 3.5E-10 87.8 11.8 121 296-427 99-254 (443)
217 3cnl_A YLQF, putative uncharac 97.9 6.3E-06 2.2E-10 83.3 5.1 57 298-358 100-157 (262)
218 3kl4_A SRP54, signal recogniti 97.9 1.4E-05 4.7E-10 86.6 7.7 120 296-426 96-252 (433)
219 4fid_A G protein alpha subunit 97.9 5E-05 1.7E-09 79.7 10.9 75 343-426 159-242 (340)
220 2yhs_A FTSY, cell division pro 97.8 4.4E-05 1.5E-09 83.8 9.8 119 296-424 292-450 (503)
221 3e70_C DPA, signal recognition 97.8 4.6E-05 1.6E-09 79.6 9.0 118 297-425 129-281 (328)
222 1rj9_A FTSY, signal recognitio 97.8 0.00013 4.4E-09 75.3 11.6 24 297-320 102-125 (304)
223 2yv5_A YJEQ protein; hydrolase 97.7 3.9E-05 1.3E-09 79.0 6.9 68 352-428 58-126 (302)
224 1zcb_A G alpha I/13; GTP-bindi 97.7 4E-05 1.4E-09 81.1 6.8 79 338-426 195-282 (362)
225 3ec1_A YQEH GTPase; atnos1, at 97.6 6.4E-05 2.2E-09 79.6 7.5 54 365-427 59-113 (369)
226 3q5d_A Atlastin-1; G protein, 97.6 0.00015 5E-09 78.8 9.9 61 296-357 66-152 (447)
227 1j8m_F SRP54, signal recogniti 97.6 0.0002 6.8E-09 73.7 10.3 120 297-426 98-253 (297)
228 1u0l_A Probable GTPase ENGC; p 97.6 0.00011 3.9E-09 75.3 7.7 68 344-427 62-130 (301)
229 3h2y_A GTPase family protein; 97.6 0.00012 4E-09 77.6 7.9 54 365-427 57-111 (368)
230 1vma_A Cell division protein F 97.6 0.00017 5.8E-09 74.6 8.9 120 296-425 103-262 (306)
231 3cnl_A YLQF, putative uncharac 97.5 1.6E-05 5.5E-10 80.3 0.6 58 360-428 5-62 (262)
232 2xxa_A Signal recognition part 97.5 0.00037 1.3E-08 75.4 10.6 120 296-426 99-254 (433)
233 1zu4_A FTSY; GTPase, signal re 97.4 0.00054 1.8E-08 71.2 9.9 24 296-319 104-127 (320)
234 3tif_A Uncharacterized ABC tra 97.3 0.00015 5.2E-09 71.9 5.0 37 298-346 32-68 (235)
235 1nij_A Hypothetical protein YJ 97.3 0.00023 8E-09 73.6 6.4 26 296-321 3-28 (318)
236 2px0_A Flagellar biosynthesis 97.3 8E-05 2.7E-09 76.6 2.7 23 297-319 105-127 (296)
237 2pcj_A ABC transporter, lipopr 97.3 0.00019 6.5E-09 70.6 4.8 37 298-346 31-67 (224)
238 2onk_A Molybdate/tungstate ABC 97.2 0.00024 8.3E-09 70.8 5.3 36 298-345 25-60 (240)
239 2ffh_A Protein (FFH); SRP54, s 97.2 0.00086 3E-08 72.3 9.9 119 296-425 97-250 (425)
240 3gfo_A Cobalt import ATP-bindi 97.2 0.00023 7.8E-09 72.4 5.0 38 298-347 35-72 (275)
241 1b0u_A Histidine permease; ABC 97.2 0.00025 8.4E-09 71.6 5.0 37 298-346 33-69 (262)
242 1g6h_A High-affinity branched- 97.2 0.00024 8.3E-09 71.3 5.0 37 298-346 34-70 (257)
243 1ji0_A ABC transporter; ATP bi 97.2 0.00026 9E-09 70.3 5.0 36 298-345 33-68 (240)
244 4g1u_C Hemin import ATP-bindin 97.2 0.00022 7.5E-09 72.2 4.3 24 298-321 38-61 (266)
245 2rcn_A Probable GTPase ENGC; Y 97.2 0.00038 1.3E-08 73.4 6.3 25 298-322 216-240 (358)
246 2olj_A Amino acid ABC transpor 97.2 0.00029 9.8E-09 71.2 4.9 37 298-346 51-87 (263)
247 2ff7_A Alpha-hemolysin translo 97.1 0.00029 9.8E-09 70.4 4.7 36 298-345 36-71 (247)
248 1ls1_A Signal recognition part 97.1 0.0014 4.7E-08 67.2 9.9 120 296-426 97-251 (295)
249 1sgw_A Putative ABC transporte 97.1 0.00028 9.5E-09 69.2 4.3 36 298-345 36-71 (214)
250 2yv5_A YJEQ protein; hydrolase 97.1 0.00044 1.5E-08 71.1 5.8 23 298-321 166-188 (302)
251 1vpl_A ABC transporter, ATP-bi 97.1 0.00033 1.1E-08 70.5 4.7 33 298-341 42-74 (256)
252 2ihy_A ABC transporter, ATP-bi 97.1 0.00036 1.2E-08 71.0 5.0 38 298-347 48-85 (279)
253 2ixe_A Antigen peptide transpo 97.1 0.00036 1.2E-08 70.7 4.8 36 298-345 46-81 (271)
254 1mv5_A LMRA, multidrug resista 97.1 0.00029 9.8E-09 70.1 3.9 24 298-321 29-52 (243)
255 2yz2_A Putative ABC transporte 97.1 0.0004 1.4E-08 70.1 5.0 37 298-346 34-70 (266)
256 2qi9_C Vitamin B12 import ATP- 97.1 0.00038 1.3E-08 69.7 4.7 36 298-346 27-62 (249)
257 1t9h_A YLOQ, probable GTPase E 97.1 0.00016 5.5E-09 74.8 2.0 24 298-321 174-197 (307)
258 2pze_A Cystic fibrosis transme 97.0 0.00062 2.1E-08 67.1 6.1 33 298-341 35-67 (229)
259 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00047 1.6E-08 68.9 5.0 23 298-320 30-52 (250)
260 3tui_C Methionine import ATP-b 97.0 0.00049 1.7E-08 72.8 5.3 24 298-321 55-78 (366)
261 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00054 1.8E-08 72.4 5.5 24 298-321 31-54 (359)
262 2cbz_A Multidrug resistance-as 97.0 0.00047 1.6E-08 68.4 4.6 33 298-341 32-64 (237)
263 1u0l_A Probable GTPase ENGC; p 97.0 0.00044 1.5E-08 70.9 4.2 25 298-322 170-194 (301)
264 3nh6_A ATP-binding cassette SU 96.9 0.00037 1.3E-08 72.0 3.4 24 298-321 81-104 (306)
265 3rlf_A Maltose/maltodextrin im 96.9 0.00069 2.4E-08 72.1 5.3 24 298-321 30-53 (381)
266 2zu0_C Probable ATP-dependent 96.9 0.00065 2.2E-08 68.6 4.8 23 298-320 47-69 (267)
267 1z47_A CYSA, putative ABC-tran 96.9 0.00074 2.5E-08 71.2 5.3 24 298-321 42-65 (355)
268 1g29_1 MALK, maltose transport 96.9 0.00082 2.8E-08 71.3 5.6 24 298-321 30-53 (372)
269 2yyz_A Sugar ABC transporter, 96.9 0.00076 2.6E-08 71.2 5.3 24 298-321 30-53 (359)
270 2og2_A Putative signal recogni 96.9 0.0033 1.1E-07 66.3 10.2 24 297-320 157-180 (359)
271 2it1_A 362AA long hypothetical 96.9 0.00079 2.7E-08 71.2 5.3 24 298-321 30-53 (362)
272 3ney_A 55 kDa erythrocyte memb 96.8 0.00041 1.4E-08 67.2 2.7 56 297-355 19-76 (197)
273 1v43_A Sugar-binding transport 96.8 0.00089 3E-08 71.0 5.3 24 298-321 38-61 (372)
274 2ghi_A Transport protein; mult 96.8 0.00089 3E-08 67.4 4.8 24 298-321 47-70 (260)
275 3d31_A Sulfate/molybdate ABC t 96.8 0.00074 2.5E-08 71.0 4.1 24 298-321 27-50 (348)
276 1znw_A Guanylate kinase, GMP k 96.8 0.0006 2.1E-08 65.5 3.1 24 298-321 21-44 (207)
277 1oxx_K GLCV, glucose, ABC tran 96.7 0.00068 2.3E-08 71.4 3.7 24 298-321 32-55 (353)
278 2bbs_A Cystic fibrosis transme 96.7 0.001 3.6E-08 68.0 4.3 24 298-321 65-88 (290)
279 1ye8_A Protein THEP1, hypothet 96.7 0.00078 2.7E-08 63.8 3.1 23 299-321 2-24 (178)
280 2nq2_C Hypothetical ABC transp 96.7 0.0012 4E-08 66.2 4.6 24 298-321 32-55 (253)
281 3tr0_A Guanylate kinase, GMP k 96.6 0.00095 3.3E-08 63.2 3.1 24 298-321 8-31 (205)
282 1htw_A HI0065; nucleotide-bind 96.6 0.001 3.5E-08 61.9 3.1 24 298-321 34-57 (158)
283 1lvg_A Guanylate kinase, GMP k 96.6 0.00096 3.3E-08 63.9 2.9 23 298-320 5-27 (198)
284 3l82_B F-box only protein 4; T 96.5 0.0057 2E-07 60.0 8.4 53 373-425 122-176 (227)
285 1kgd_A CASK, peripheral plasma 96.5 0.0012 3.9E-08 62.2 3.1 24 298-321 6-29 (180)
286 1azs_C GS-alpha; complex (lyas 96.5 0.0019 6.3E-08 69.3 5.0 79 338-426 211-298 (402)
287 3a00_A Guanylate kinase, GMP k 96.5 0.00098 3.3E-08 62.9 2.5 24 298-321 2-25 (186)
288 3b85_A Phosphate starvation-in 96.4 0.0011 3.8E-08 64.5 2.6 23 298-320 23-45 (208)
289 1z6g_A Guanylate kinase; struc 96.4 0.0012 4E-08 64.4 2.5 24 298-321 24-47 (218)
290 4dzz_A Plasmid partitioning pr 96.4 0.0081 2.8E-07 56.7 8.4 68 344-424 75-142 (206)
291 1s96_A Guanylate kinase, GMP k 96.4 0.0015 5.2E-08 64.0 3.1 24 298-321 17-40 (219)
292 1zp6_A Hypothetical protein AT 96.3 0.0018 6.3E-08 60.6 3.5 23 298-320 10-32 (191)
293 3c8u_A Fructokinase; YP_612366 96.3 0.0018 6.1E-08 62.2 3.4 25 297-321 22-46 (208)
294 2f1r_A Molybdopterin-guanine d 96.3 0.00074 2.5E-08 63.8 0.3 24 298-321 3-26 (171)
295 3gd7_A Fusion complex of cysti 96.3 0.0027 9.2E-08 67.7 4.6 24 298-321 48-71 (390)
296 4gp7_A Metallophosphoesterase; 96.3 0.0019 6.5E-08 60.3 3.0 22 298-319 10-31 (171)
297 3b5x_A Lipid A export ATP-bind 96.2 0.0027 9.2E-08 71.0 4.7 38 298-347 370-407 (582)
298 3b60_A Lipid A export ATP-bind 96.2 0.0027 9.1E-08 71.0 4.6 37 298-346 370-406 (582)
299 2yl4_A ATP-binding cassette SU 96.2 0.0025 8.6E-08 71.4 4.0 36 298-345 371-406 (595)
300 3asz_A Uridine kinase; cytidin 96.2 0.0024 8.3E-08 61.0 3.3 24 297-320 6-29 (211)
301 2pjz_A Hypothetical protein ST 96.2 0.0023 7.8E-08 64.6 3.2 24 298-321 31-54 (263)
302 3qf4_B Uncharacterized ABC tra 96.2 0.0029 9.8E-08 71.1 4.3 36 298-345 382-417 (598)
303 4a82_A Cystic fibrosis transme 96.1 0.0024 8.1E-08 71.4 3.2 36 298-345 368-403 (578)
304 2eyu_A Twitching motility prot 96.1 0.0026 8.8E-08 64.0 3.1 24 298-321 26-49 (261)
305 3qf4_A ABC transporter, ATP-bi 96.0 0.0033 1.1E-07 70.4 3.7 36 298-345 370-405 (587)
306 2bdt_A BH3686; alpha-beta prot 96.0 0.0033 1.1E-07 59.0 3.1 22 298-319 3-24 (189)
307 3tau_A Guanylate kinase, GMP k 96.0 0.0039 1.3E-07 59.9 3.6 24 298-321 9-32 (208)
308 3lnc_A Guanylate kinase, GMP k 95.9 0.0026 8.8E-08 62.0 2.1 24 298-321 28-52 (231)
309 2gza_A Type IV secretion syste 95.9 0.0043 1.5E-07 65.3 3.9 24 298-321 176-199 (361)
310 4a74_A DNA repair and recombin 95.9 0.0035 1.2E-07 60.1 2.9 24 298-321 26-49 (231)
311 2v9p_A Replication protein E1; 95.9 0.0035 1.2E-07 64.7 3.0 23 298-320 127-149 (305)
312 2i3b_A HCR-ntpase, human cance 95.9 0.0032 1.1E-07 60.2 2.5 23 299-321 3-25 (189)
313 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0037 1.3E-07 65.0 3.0 24 298-321 172-195 (330)
314 2j41_A Guanylate kinase; GMP, 95.8 0.0051 1.8E-07 58.1 3.6 24 298-321 7-30 (207)
315 4eun_A Thermoresistant glucoki 95.8 0.0047 1.6E-07 58.8 3.4 23 298-320 30-52 (200)
316 2ehv_A Hypothetical protein PH 95.8 0.0047 1.6E-07 60.0 3.4 21 298-318 31-51 (251)
317 2bbw_A Adenylate kinase 4, AK4 95.8 0.0053 1.8E-07 60.4 3.8 25 297-321 27-54 (246)
318 4b4t_L 26S protease subunit RP 95.8 0.14 4.6E-06 55.4 15.0 25 296-320 214-238 (437)
319 2rcn_A Probable GTPase ENGC; Y 95.7 0.021 7.1E-07 60.2 8.3 48 374-428 128-176 (358)
320 3aez_A Pantothenate kinase; tr 95.7 0.0054 1.8E-07 63.3 3.7 26 296-321 89-114 (312)
321 2jeo_A Uridine-cytidine kinase 95.7 0.0059 2E-07 60.2 3.7 23 298-320 26-48 (245)
322 1kag_A SKI, shikimate kinase I 95.7 0.0043 1.5E-07 57.0 2.5 24 298-321 5-28 (173)
323 2xtz_A Guanine nucleotide-bind 95.7 0.0032 1.1E-07 66.3 1.8 74 344-426 182-264 (354)
324 3ozx_A RNAse L inhibitor; ATP 95.6 0.0079 2.7E-07 66.8 4.8 24 298-321 295-318 (538)
325 3l2o_B F-box only protein 4; s 95.6 0.017 5.8E-07 59.2 6.7 25 540-564 284-308 (312)
326 3uie_A Adenylyl-sulfate kinase 95.5 0.0071 2.4E-07 57.5 3.6 25 297-321 25-49 (200)
327 3ozx_A RNAse L inhibitor; ATP 95.5 0.0059 2E-07 67.8 3.2 25 298-322 26-50 (538)
328 1np6_A Molybdopterin-guanine d 95.5 0.0069 2.3E-07 57.3 3.2 25 296-320 5-29 (174)
329 2yvu_A Probable adenylyl-sulfa 95.5 0.1 3.6E-06 48.5 11.4 24 297-320 13-36 (186)
330 3tqc_A Pantothenate kinase; bi 95.5 0.02 7E-07 59.3 7.0 25 296-320 91-115 (321)
331 4b4t_K 26S protease regulatory 95.5 0.13 4.3E-06 55.5 13.4 24 297-320 206-229 (428)
332 1knq_A Gluconate kinase; ALFA/ 95.5 0.0087 3E-07 55.3 3.8 24 297-320 8-31 (175)
333 3kta_A Chromosome segregation 95.4 0.0067 2.3E-07 56.4 3.0 23 298-320 27-49 (182)
334 1yqt_A RNAse L inhibitor; ATP- 95.4 0.007 2.4E-07 67.1 3.5 25 298-322 48-72 (538)
335 3jvv_A Twitching mobility prot 95.4 0.0065 2.2E-07 63.9 3.1 24 298-321 124-147 (356)
336 1bif_A 6-phosphofructo-2-kinas 95.4 0.01 3.6E-07 64.4 4.6 102 297-407 39-150 (469)
337 3b9q_A Chloroplast SRP recepto 95.3 0.0077 2.6E-07 61.9 3.1 24 297-320 100-123 (302)
338 1cke_A CK, MSSA, protein (cyti 95.3 0.0085 2.9E-07 57.6 3.1 23 298-320 6-28 (227)
339 1jjv_A Dephospho-COA kinase; P 95.3 0.01 3.4E-07 56.4 3.6 22 298-319 3-24 (206)
340 4f4c_A Multidrug resistance pr 95.2 0.0069 2.3E-07 74.1 3.0 37 298-346 1106-1142(1321)
341 1lw7_A Transcriptional regulat 95.2 0.0067 2.3E-07 63.6 2.5 24 298-321 171-194 (365)
342 3h4m_A Proteasome-activating n 95.2 0.17 5.8E-06 50.2 12.7 24 297-320 51-74 (285)
343 1sq5_A Pantothenate kinase; P- 95.2 0.01 3.4E-07 60.9 3.5 24 297-320 80-103 (308)
344 3j16_B RLI1P; ribosome recycli 95.2 0.0092 3.2E-07 67.2 3.5 25 298-322 104-128 (608)
345 2ewv_A Twitching motility prot 95.1 0.0087 3E-07 63.2 3.0 24 298-321 137-160 (372)
346 3lw7_A Adenylate kinase relate 95.1 0.011 3.9E-07 53.5 3.2 20 298-317 2-21 (179)
347 4e22_A Cytidylate kinase; P-lo 95.1 0.013 4.4E-07 58.2 3.9 21 298-318 28-48 (252)
348 2x8a_A Nuclear valosin-contain 95.1 0.024 8.1E-07 57.2 5.9 22 300-321 47-68 (274)
349 3ec2_A DNA replication protein 95.1 0.0087 3E-07 55.7 2.5 24 298-321 39-62 (180)
350 2oap_1 GSPE-2, type II secreti 95.1 0.011 3.7E-07 65.3 3.5 23 299-321 262-284 (511)
351 2iw3_A Elongation factor 3A; a 95.0 0.013 4.3E-07 69.3 4.3 33 298-341 700-732 (986)
352 2if2_A Dephospho-COA kinase; a 95.0 0.01 3.6E-07 56.1 3.0 22 298-319 2-23 (204)
353 1p9r_A General secretion pathw 95.0 0.01 3.4E-07 63.9 3.1 24 298-321 168-191 (418)
354 3euj_A Chromosome partition pr 95.0 0.01 3.5E-07 65.0 3.1 23 298-320 30-52 (483)
355 3bfv_A CAPA1, CAPB2, membrane 95.0 0.29 9.9E-06 49.1 13.7 65 345-425 192-257 (271)
356 3g5u_A MCG1178, multidrug resi 95.0 0.013 4.4E-07 71.5 4.3 24 298-321 417-440 (1284)
357 4ido_A Atlastin-1; GTPase, GTP 95.0 0.095 3.2E-06 56.8 10.5 23 296-318 66-88 (457)
358 4b4t_J 26S protease regulatory 94.9 0.25 8.4E-06 52.8 13.5 24 297-320 182-205 (405)
359 3cwq_A Para family chromosome 94.9 0.028 9.4E-07 54.1 5.7 68 343-426 66-134 (209)
360 2npi_A Protein CLP1; CLP1-PCF1 94.9 0.0087 3E-07 65.1 2.3 24 298-321 139-162 (460)
361 1yqt_A RNAse L inhibitor; ATP- 94.9 0.016 5.5E-07 64.2 4.5 25 298-322 313-337 (538)
362 3kb2_A SPBC2 prophage-derived 94.9 0.014 4.7E-07 53.2 3.3 23 298-320 2-24 (173)
363 3bk7_A ABC transporter ATP-bin 94.9 0.011 3.8E-07 66.5 3.2 25 298-322 118-142 (607)
364 4f4c_A Multidrug resistance pr 94.9 0.015 5.1E-07 71.2 4.5 33 298-341 445-477 (1321)
365 2qor_A Guanylate kinase; phosp 94.9 0.013 4.3E-07 56.0 3.1 25 297-321 12-36 (204)
366 1f2t_A RAD50 ABC-ATPase; DNA d 94.9 0.017 5.9E-07 52.8 3.9 21 298-318 24-44 (149)
367 2qt1_A Nicotinamide riboside k 94.9 0.016 5.6E-07 55.0 3.9 24 297-320 21-44 (207)
368 1rz3_A Hypothetical protein rb 94.9 0.015 5E-07 55.5 3.5 24 297-320 22-45 (201)
369 2kjq_A DNAA-related protein; s 94.8 0.011 3.6E-07 54.2 2.3 24 298-321 37-60 (149)
370 3la6_A Tyrosine-protein kinase 94.8 0.26 8.8E-06 50.0 12.8 65 346-425 203-267 (286)
371 2obl_A ESCN; ATPase, hydrolase 94.7 0.017 5.8E-07 60.5 3.9 24 298-321 72-95 (347)
372 3bk7_A ABC transporter ATP-bin 94.7 0.018 6.3E-07 64.8 4.4 24 298-321 383-406 (607)
373 3t61_A Gluconokinase; PSI-biol 94.7 0.015 5.1E-07 55.1 3.0 24 297-320 18-41 (202)
374 1odf_A YGR205W, hypothetical 3 94.7 0.038 1.3E-06 56.3 6.2 26 296-321 30-55 (290)
375 3vaa_A Shikimate kinase, SK; s 94.7 0.017 5.8E-07 54.8 3.4 23 298-320 26-48 (199)
376 4b4t_I 26S protease regulatory 94.7 0.26 9E-06 53.0 12.9 24 297-320 216-239 (437)
377 3g5u_A MCG1178, multidrug resi 94.6 0.018 6.1E-07 70.3 4.3 37 298-346 1060-1096(1284)
378 2vp4_A Deoxynucleoside kinase; 94.6 0.014 4.8E-07 56.9 2.8 24 297-320 20-43 (230)
379 1xjc_A MOBB protein homolog; s 94.6 0.017 5.9E-07 54.4 3.3 25 296-320 3-27 (169)
380 3qf7_A RAD50; ABC-ATPase, ATPa 94.6 0.019 6.4E-07 60.5 3.9 21 298-318 24-44 (365)
381 3end_A Light-independent proto 94.6 0.068 2.3E-06 54.1 7.9 69 344-424 156-225 (307)
382 2dpy_A FLII, flagellum-specifi 94.5 0.018 6.3E-07 62.2 3.6 24 298-321 158-181 (438)
383 4b4t_M 26S protease regulatory 94.5 0.26 8.7E-06 53.2 12.3 24 297-320 215-238 (434)
384 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.019 6.4E-07 54.8 3.1 23 298-320 24-46 (235)
385 1ly1_A Polynucleotide kinase; 94.4 0.024 8.1E-07 52.0 3.7 22 298-319 3-24 (181)
386 1ex7_A Guanylate kinase; subst 94.4 0.02 6.7E-07 54.8 3.2 23 299-321 3-25 (186)
387 3j16_B RLI1P; ribosome recycli 94.4 0.02 6.7E-07 64.5 3.5 26 298-323 379-404 (608)
388 3kjh_A CO dehydrogenase/acetyl 94.3 0.081 2.8E-06 51.0 7.4 65 343-423 130-194 (254)
389 3cio_A ETK, tyrosine-protein k 94.2 0.35 1.2E-05 49.2 12.2 65 346-425 215-279 (299)
390 1qhx_A CPT, protein (chloramph 94.2 0.026 9E-07 51.9 3.4 23 298-320 4-26 (178)
391 2jaq_A Deoxyguanosine kinase; 94.2 0.026 8.9E-07 52.8 3.4 22 299-320 2-23 (205)
392 1nks_A Adenylate kinase; therm 94.1 0.029 1E-06 51.9 3.5 23 298-320 2-24 (194)
393 1xwi_A SKD1 protein; VPS4B, AA 94.0 0.29 1E-05 50.2 11.4 24 297-320 45-68 (322)
394 2rhm_A Putative kinase; P-loop 94.0 0.032 1.1E-06 51.8 3.7 23 297-319 5-27 (193)
395 1ixz_A ATP-dependent metallopr 94.0 0.024 8.3E-07 55.7 2.9 23 299-321 51-73 (254)
396 1cr0_A DNA primase/helicase; R 94.0 0.024 8.3E-07 57.1 2.9 23 298-320 36-58 (296)
397 3trf_A Shikimate kinase, SK; a 93.9 0.032 1.1E-06 51.8 3.5 23 297-319 5-27 (185)
398 3cf0_A Transitional endoplasmi 93.9 0.27 9.3E-06 49.7 10.8 25 297-321 49-73 (301)
399 4b4t_H 26S protease regulatory 93.9 0.41 1.4E-05 51.9 12.5 25 296-320 242-266 (467)
400 2pez_A Bifunctional 3'-phospho 93.8 0.035 1.2E-06 51.4 3.6 23 298-320 6-28 (179)
401 1kht_A Adenylate kinase; phosp 93.8 0.033 1.1E-06 51.5 3.4 22 298-319 4-25 (192)
402 1in4_A RUVB, holliday junction 93.8 0.027 9.3E-07 58.1 3.1 24 297-320 51-74 (334)
403 3qks_A DNA double-strand break 93.8 0.039 1.3E-06 53.0 3.9 22 297-318 23-44 (203)
404 3cm0_A Adenylate kinase; ATP-b 93.8 0.037 1.3E-06 51.3 3.6 22 298-319 5-26 (186)
405 1uf9_A TT1252 protein; P-loop, 93.8 0.039 1.3E-06 51.7 3.8 25 296-320 7-31 (203)
406 1qhl_A Protein (cell division 93.7 0.0057 1.9E-07 60.4 -2.3 23 299-321 29-51 (227)
407 1t9h_A YLOQ, probable GTPase E 93.6 0.03 1E-06 57.7 2.9 75 373-455 83-167 (307)
408 2c95_A Adenylate kinase 1; tra 93.6 0.041 1.4E-06 51.2 3.6 23 297-319 9-31 (196)
409 1y63_A LMAJ004144AAA protein; 93.6 0.044 1.5E-06 51.3 3.7 24 297-320 10-33 (184)
410 1n0w_A DNA repair protein RAD5 93.6 0.035 1.2E-06 53.5 3.1 23 298-320 25-47 (243)
411 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.31 1.1E-05 47.4 10.0 24 297-320 39-62 (262)
412 3qkt_A DNA double-strand break 93.5 0.042 1.4E-06 56.9 3.9 22 297-318 23-44 (339)
413 3iij_A Coilin-interacting nucl 93.5 0.038 1.3E-06 51.2 3.2 23 297-319 11-33 (180)
414 3exa_A TRNA delta(2)-isopenten 93.5 0.11 3.8E-06 53.8 6.9 88 297-384 3-98 (322)
415 1iy2_A ATP-dependent metallopr 93.5 0.033 1.1E-06 55.7 2.9 23 299-321 75-97 (278)
416 1tev_A UMP-CMP kinase; ploop, 93.5 0.046 1.6E-06 50.6 3.7 22 298-319 4-25 (196)
417 2plr_A DTMP kinase, probable t 93.4 0.052 1.8E-06 51.1 4.0 23 298-320 5-27 (213)
418 1vht_A Dephospho-COA kinase; s 93.4 0.051 1.8E-06 52.0 4.0 23 297-319 4-26 (218)
419 2ze6_A Isopentenyl transferase 93.4 0.04 1.4E-06 54.7 3.3 22 298-319 2-23 (253)
420 4aby_A DNA repair protein RECN 93.3 0.013 4.6E-07 61.9 -0.3 21 299-319 62-82 (415)
421 2cvh_A DNA repair and recombin 93.3 0.04 1.4E-06 52.3 3.1 22 298-319 21-42 (220)
422 1gtv_A TMK, thymidylate kinase 93.3 0.02 7E-07 54.3 0.9 22 299-320 2-23 (214)
423 1via_A Shikimate kinase; struc 93.2 0.04 1.4E-06 50.9 2.8 23 298-320 5-27 (175)
424 2iw3_A Elongation factor 3A; a 93.2 0.037 1.3E-06 65.4 3.1 24 298-321 462-485 (986)
425 2v54_A DTMP kinase, thymidylat 93.2 0.055 1.9E-06 50.8 3.8 23 298-320 5-27 (204)
426 2ce7_A Cell division protein F 93.1 0.58 2E-05 51.0 12.2 23 298-320 50-72 (476)
427 3t15_A Ribulose bisphosphate c 93.1 0.19 6.6E-06 50.8 7.9 24 297-320 36-59 (293)
428 1ukz_A Uridylate kinase; trans 93.1 0.061 2.1E-06 50.7 3.9 25 296-320 14-38 (203)
429 1qf9_A UMP/CMP kinase, protein 93.1 0.069 2.4E-06 49.3 4.2 23 297-319 6-28 (194)
430 3zvl_A Bifunctional polynucleo 93.1 0.48 1.6E-05 50.5 11.3 25 296-320 257-281 (416)
431 3nwj_A ATSK2; P loop, shikimat 93.0 0.038 1.3E-06 55.2 2.5 23 298-320 49-71 (250)
432 1m7g_A Adenylylsulfate kinase; 93.0 0.082 2.8E-06 50.5 4.8 23 298-320 26-48 (211)
433 3b9p_A CG5977-PA, isoform A; A 93.0 0.18 6.3E-06 50.3 7.6 25 297-321 54-78 (297)
434 1nn5_A Similar to deoxythymidy 93.0 0.058 2E-06 51.0 3.6 23 297-319 9-31 (215)
435 2cdn_A Adenylate kinase; phosp 93.0 0.066 2.3E-06 50.5 4.0 22 298-319 21-42 (201)
436 1e69_A Chromosome segregation 93.0 0.042 1.4E-06 56.5 2.7 22 298-319 25-46 (322)
437 1aky_A Adenylate kinase; ATP:A 92.9 0.061 2.1E-06 51.6 3.7 24 297-320 4-27 (220)
438 2bwj_A Adenylate kinase 5; pho 92.9 0.057 1.9E-06 50.4 3.4 23 298-320 13-35 (199)
439 3fb4_A Adenylate kinase; psych 92.9 0.056 1.9E-06 51.5 3.4 21 299-319 2-22 (216)
440 1zd8_A GTP:AMP phosphotransfer 92.9 0.056 1.9E-06 52.2 3.4 24 297-320 7-30 (227)
441 3hu3_A Transitional endoplasmi 92.8 0.84 2.9E-05 49.8 13.0 24 297-320 238-261 (489)
442 3a4m_A L-seryl-tRNA(SEC) kinas 92.8 0.065 2.2E-06 53.2 3.8 23 297-319 4-26 (260)
443 2wwf_A Thymidilate kinase, put 92.8 0.06 2E-06 50.9 3.4 23 297-319 10-32 (212)
444 2z0h_A DTMP kinase, thymidylat 92.7 0.063 2.2E-06 50.0 3.4 22 299-320 2-23 (197)
445 1w1w_A Structural maintenance 92.7 0.052 1.8E-06 58.1 3.1 23 298-320 27-49 (430)
446 1zak_A Adenylate kinase; ATP:A 92.6 0.057 1.9E-06 51.9 3.0 24 297-320 5-28 (222)
447 3a8t_A Adenylate isopentenyltr 92.6 0.24 8.3E-06 51.6 8.0 24 298-321 41-64 (339)
448 1svm_A Large T antigen; AAA+ f 92.6 0.054 1.9E-06 57.3 3.1 23 298-320 170-192 (377)
449 3dl0_A Adenylate kinase; phosp 92.6 0.066 2.2E-06 51.1 3.4 21 299-319 2-22 (216)
450 2pbr_A DTMP kinase, thymidylat 92.6 0.067 2.3E-06 49.5 3.3 21 299-319 2-22 (195)
451 2iyv_A Shikimate kinase, SK; t 92.5 0.053 1.8E-06 50.3 2.6 22 298-319 3-24 (184)
452 2o5v_A DNA replication and rep 92.5 0.058 2E-06 56.7 3.1 22 298-319 27-48 (359)
453 1gvn_B Zeta; postsegregational 92.5 0.087 3E-06 53.4 4.4 24 297-320 33-56 (287)
454 1e6c_A Shikimate kinase; phosp 92.5 0.06 2.1E-06 49.1 2.8 22 298-319 3-24 (173)
455 2pt5_A Shikimate kinase, SK; a 92.4 0.074 2.5E-06 48.3 3.4 21 299-319 2-22 (168)
456 3d8b_A Fidgetin-like protein 1 92.4 0.45 1.5E-05 49.4 9.8 24 297-320 117-140 (357)
457 1nlf_A Regulatory protein REPA 92.4 0.058 2E-06 53.9 2.9 22 298-319 31-52 (279)
458 3ux8_A Excinuclease ABC, A sub 92.4 0.039 1.3E-06 62.6 1.8 21 298-318 349-369 (670)
459 3cf2_A TER ATPase, transitiona 92.3 0.64 2.2E-05 53.9 11.6 26 296-321 237-262 (806)
460 3r20_A Cytidylate kinase; stru 92.3 0.078 2.7E-06 52.4 3.5 23 297-319 9-31 (233)
461 2vli_A Antibiotic resistance p 92.2 0.061 2.1E-06 49.6 2.5 22 298-319 6-27 (183)
462 3vfd_A Spastin; ATPase, microt 92.2 0.47 1.6E-05 49.7 9.7 24 297-320 148-171 (389)
463 2p5t_B PEZT; postsegregational 92.2 0.058 2E-06 53.3 2.5 25 296-320 31-55 (253)
464 3ake_A Cytidylate kinase; CMP 92.0 0.076 2.6E-06 49.9 3.0 23 298-320 3-25 (208)
465 1jbk_A CLPB protein; beta barr 92.0 0.099 3.4E-06 47.5 3.7 23 298-320 44-66 (195)
466 3tlx_A Adenylate kinase 2; str 92.0 0.1 3.4E-06 51.3 3.9 23 297-319 29-51 (243)
467 3syl_A Protein CBBX; photosynt 91.8 0.27 9.4E-06 49.2 7.1 25 296-320 66-90 (309)
468 1tf7_A KAIC; homohexamer, hexa 91.8 0.071 2.4E-06 58.7 2.9 25 540-564 283-307 (525)
469 1q3t_A Cytidylate kinase; nucl 91.8 0.095 3.3E-06 51.0 3.5 23 297-319 16-38 (236)
470 1uj2_A Uridine-cytidine kinase 91.7 0.1 3.6E-06 51.3 3.8 25 296-320 21-45 (252)
471 1d2n_A N-ethylmaleimide-sensit 91.7 1.5 5E-05 43.2 12.2 25 296-320 63-87 (272)
472 3cr8_A Sulfate adenylyltranfer 91.7 0.051 1.8E-06 60.4 1.6 74 132-213 177-262 (552)
473 1lv7_A FTSH; alpha/beta domain 91.7 0.09 3.1E-06 51.6 3.2 23 298-320 46-68 (257)
474 3hr8_A Protein RECA; alpha and 91.7 0.28 9.5E-06 51.5 7.1 23 298-320 62-84 (356)
475 1zuh_A Shikimate kinase; alpha 91.6 0.1 3.6E-06 47.5 3.4 24 296-319 6-29 (168)
476 1e4v_A Adenylate kinase; trans 91.6 0.093 3.2E-06 50.1 3.2 21 299-319 2-22 (214)
477 4eaq_A DTMP kinase, thymidylat 91.6 0.12 4.1E-06 50.5 4.0 25 297-321 26-50 (229)
478 3umf_A Adenylate kinase; rossm 91.4 0.13 4.4E-06 50.3 3.9 25 296-320 28-52 (217)
479 2f6r_A COA synthase, bifunctio 91.3 0.13 4.4E-06 51.8 4.0 24 296-319 74-97 (281)
480 3auy_A DNA double-strand break 91.3 0.11 3.9E-06 54.4 3.7 22 297-318 25-46 (371)
481 3thx_A DNA mismatch repair pro 91.3 0.34 1.2E-05 57.0 8.1 20 298-317 663-682 (934)
482 2xb4_A Adenylate kinase; ATP-b 91.3 0.11 3.8E-06 50.1 3.4 21 299-319 2-22 (223)
483 1ewq_A DNA mismatch repair pro 91.3 0.089 3.1E-06 60.7 3.1 24 298-321 577-600 (765)
484 3be4_A Adenylate kinase; malar 91.2 0.094 3.2E-06 50.3 2.8 22 298-319 6-27 (217)
485 3eie_A Vacuolar protein sortin 91.2 0.34 1.2E-05 49.4 7.2 25 296-320 50-74 (322)
486 3eph_A TRNA isopentenyltransfe 91.2 0.41 1.4E-05 51.2 7.8 88 298-385 3-98 (409)
487 2grj_A Dephospho-COA kinase; T 91.1 0.13 4.3E-06 49.2 3.5 25 296-320 11-35 (192)
488 1sxj_E Activator 1 40 kDa subu 91.1 0.089 3E-06 53.9 2.7 23 298-320 37-59 (354)
489 1wb9_A DNA mismatch repair pro 91.1 0.095 3.3E-06 60.8 3.1 23 298-320 608-630 (800)
490 1pzn_A RAD51, DNA repair and r 91.1 0.098 3.3E-06 54.6 2.9 24 298-321 132-155 (349)
491 1ak2_A Adenylate kinase isoenz 91.0 0.14 4.8E-06 49.7 3.8 24 297-320 16-39 (233)
492 4fcw_A Chaperone protein CLPB; 91.0 0.38 1.3E-05 48.1 7.2 23 298-320 48-70 (311)
493 3bos_A Putative DNA replicatio 91.0 0.13 4.5E-06 48.9 3.5 23 298-320 53-75 (242)
494 2w58_A DNAI, primosome compone 90.8 0.13 4.4E-06 48.4 3.2 23 298-320 55-77 (202)
495 1ypw_A Transitional endoplasmi 90.7 0.55 1.9E-05 54.4 9.1 25 297-321 238-262 (806)
496 3ux8_A Excinuclease ABC, A sub 90.7 0.098 3.4E-06 59.3 2.7 17 298-314 45-61 (670)
497 2p65_A Hypothetical protein PF 90.6 0.13 4.3E-06 46.8 2.8 24 297-320 43-66 (187)
498 1fnn_A CDC6P, cell division co 90.4 0.14 4.6E-06 52.9 3.3 23 298-320 45-67 (389)
499 1ltq_A Polynucleotide kinase; 90.3 0.16 5.6E-06 50.9 3.7 22 298-319 3-24 (301)
500 1a7j_A Phosphoribulokinase; tr 90.0 0.11 3.7E-06 52.8 2.0 23 297-319 5-27 (290)
No 1
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=100.00 E-value=1.1e-58 Score=493.91 Aligned_cols=295 Identities=29% Similarity=0.438 Sum_probs=227.0
Q ss_pred hhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHHHHHhcccccCCCcEEEEC
Q 007583 78 QAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIFVN 157 (597)
Q Consensus 78 ~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~~~~v~~~ 157 (597)
+++|+|+.+||+|+|. .|+..++|+ + +|||+||||+||++||++ + .++|+||||
T Consensus 10 ~~~~~e~~~l~~~~~~--------------~~~~~~~~~----~-~~~~~~~~g~gk~~e~~~---~----~~~~~v~~~ 63 (364)
T 2qtf_A 10 KEFEEEAIALVEGANY--------------KVTSIYKLP----K-SPNVKFYIQYDKLQQIKN---D----EEISTLIIF 63 (364)
T ss_dssp TTTHHHHHHHHHHTTE--------------EEEEEECCC----S-SCBTTTBSCHHHHHHHHT---C----TTCCEEEES
T ss_pred HHHHHHHHHHHHHCCC--------------EEEEEEEEc----c-CCCCcceechhHHHHHhh---c----cCCCEEEEC
Confidence 4579999999999963 367788886 2 689999999999999998 2 489999999
Q ss_pred CCCChHHHHHHHHhcCC-CccchhhhHHHHHHhhccchHHHHHHHHHhhhhcccccccccCCCCCcccccCchhhhhhhc
Q 007583 158 AILSGIQQRNLERAWGK-PVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSAR 236 (597)
Q Consensus 158 ~~Lsp~Q~~nle~~~~~-~V~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~ 236 (597)
++|||+|+||||++|++ +|+||+.|||+||++||.|++||+|++||+|.|.+||+ +.|.++ + +
T Consensus 64 ~~l~p~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l--------------~-~ 127 (364)
T 2qtf_A 64 EQLKPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPII-KETYTK--------------S-K 127 (364)
T ss_dssp SCCCHHHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHC--------------------
T ss_pred CCCCHHHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh-hhhhHH--------------H-H
Confidence 99999999999999999 99999999999999999999999999999999999999 666432 1 2
Q ss_pred cCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007583 237 GRGSGGRGFISGAGETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSA 316 (597)
Q Consensus 237 ~~~~g~~g~~~g~ge~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlna 316 (597)
++ |++|+ +||||++++.+++.+..++..++++|+++.++|...|..|.+. +.++|+|+|++|||||||+|+
T Consensus 128 ~~--~~i~~-~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~------~~~~V~lvG~~naGKSTLln~ 198 (364)
T 2qtf_A 128 IG--EQQGP-LGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRN------NIPSIGIVGYTNSGKTSLFNS 198 (364)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHC-------------------CCEEEEECBTTSSHHHHHHH
T ss_pred hc--CCCCc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------CCcEEEEECCCCCCHHHHHHH
Confidence 22 34554 5999999999999999999999999999998887777666544 678899999999999999999
Q ss_pred HHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCC--hHHH
Q 007583 317 LSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN--LEEH 394 (597)
Q Consensus 317 L~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~--~~~~ 394 (597)
|++......+.+++|.+++.+.+.+ +|..+.++||||++..+|+++++.|.+++.++..+|++++|+|++++. ...+
T Consensus 199 L~~~~~~~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 199 LTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIET 277 (364)
T ss_dssp HHCC-----------CCSCEEEEEE-TTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHH
T ss_pred HHCCCccccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHH
Confidence 9998877778899999999999998 668899999999999999999999999999999999999999999875 4556
Q ss_pred HHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 395 RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 395 ~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
...+.++|..++... .|+|+|+||+|+.+.
T Consensus 278 ~~~~~~~L~~l~~~~---~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 278 LQSSFEILREIGVSG---KPILVTLNKIDKING 307 (364)
T ss_dssp HHHHHHHHHHHTCCS---CCEEEEEECGGGCCS
T ss_pred HHHHHHHHHHhCcCC---CCEEEEEECCCCCCc
Confidence 666778888887643 489999999998653
No 2
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.87 E-value=4.3e-22 Score=218.81 Aligned_cols=221 Identities=18% Similarity=0.137 Sum_probs=135.3
Q ss_pred cCCCccchhhhHHHHHHhhccchHHHHHHHHHhhhhcccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCCh
Q 007583 172 WGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAGE 251 (597)
Q Consensus 172 ~~~~V~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~ge 251 (597)
.|+-.+.+.+.|.|+..+. .++.+++.+++|...+++....|.. +++.....-...+ .+|.|
T Consensus 135 ngk~dL~qaEav~dli~a~---t~~~~~~a~~~l~G~ls~~i~~lr~------------~L~~~~a~iea~i---Df~ee 196 (476)
T 3gee_A 135 NGRIDLLQAEAIGEMIHAR---TESAYRTAVSQMKGDLSVRLGGLRE------------QLIRSCALIELEL---DFSEE 196 (476)
T ss_dssp TTSSCHHHHHHHHHHHHCC---SHHHHHHHHHHHHTHHHHHHHHHHT------------HHHHHHHTTTTCS---SCCSS
T ss_pred cCcCcHHHHHHHHHHHhCC---CHHHHHHHHHhhCCcHHHHHHHHHH------------HHHHHHHHhheec---CCCcc
Confidence 3788888999999998754 3567788899999888875543211 1111111111122 24555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccc
Q 007583 252 TELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFA 330 (597)
Q Consensus 252 ~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~ 330 (597)
.--+.+++.+.+++..++++|+++.+.+...+..|. ..+|+|+|++|+|||||+|+|++... .+.+.+++
T Consensus 197 di~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~---------~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gt 267 (476)
T 3gee_A 197 DVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSE---------GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGT 267 (476)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CEEEEEECCTTSSHHHHHHHCC-------------
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC---------CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc
Confidence 322367889999999999999999876654443332 26799999999999999999999864 45666777
Q ss_pred eecCceeEEEecCCceEEEeecccccccchhhHHHHH--HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC
Q 007583 331 TLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS 408 (597)
Q Consensus 331 Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f--~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~ 408 (597)
|.+.....+.+ +|.++.+|||||+.. +.+.++.+ ..+...+..+|++++|+|++++....+......++..+.
T Consensus 268 T~d~~~~~i~~-~g~~l~liDT~G~~~--~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-- 342 (476)
T 3gee_A 268 TRDYIEECFIH-DKTMFRLTDTAGLRE--AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-- 342 (476)
T ss_dssp -----CEEEEE-TTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--
T ss_pred eEEEEEEEEEE-CCeEEEEEECCCCCc--chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--
Confidence 88877777777 788999999999954 34444443 456667788999999999998866544455556677665
Q ss_pred ccCCCcEEEEEecCCCCCc
Q 007583 409 EEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 409 ~~~~~P~IiVlNKiDl~~~ 427 (597)
..|+|+|+||+|+...
T Consensus 343 ---~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 343 ---AAKFLTVANKLDRAAN 358 (476)
T ss_dssp ---TSEEEEEEECTTSCTT
T ss_pred ---CCCEEEEEECcCCCCc
Confidence 2599999999998653
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=2.2e-21 Score=213.39 Aligned_cols=213 Identities=23% Similarity=0.269 Sum_probs=148.3
Q ss_pred cCCCccchhhhHHHHHHhhccchHHHHHHHHHhhhhcccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCCh
Q 007583 172 WGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAGE 251 (597)
Q Consensus 172 ~~~~V~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~ge 251 (597)
.|.-.++..+.|.|+. +|+| ++++|+.++++.+.+++..+.|.. .++.....-...+ .+|+|
T Consensus 147 nGk~Dl~qaE~i~dli--~a~t-~~~~~~a~~~l~g~l~~~~~~~r~------------~l~~~~~~ie~~i---df~ee 208 (482)
T 1xzp_A 147 NGKMDLTSAEAVRDLI--EAKS-ETSLKLSLRNLKGGLRDFVDSLRR------------ELIEVLAEIRVEL---DYPDE 208 (482)
T ss_dssp TTSSCHHHHHHHHHHH--HCCS-HHHHHHHHHHHTTHHHHHHHHHHH------------HHHHHHHHHHHHH---HSTTT
T ss_pred cCCcCHHHHHHHHHHH--hhcc-HHHHHHHHHhcchhHhHHHHHHHH------------HHHHHHHHhhhcC---CCCcc
Confidence 5777778889999998 4555 456689999999999987654310 0000000000011 24555
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCC-ccccccc
Q 007583 252 TELQ-LQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLF 329 (597)
Q Consensus 252 ~~~e-~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f 329 (597)
++ .+++ +..++..++.+|+++.+.+...+..| . ...|+|+|++|||||||+|+|++... .+.+.++
T Consensus 209 --i~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~r--~-------~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g 276 (482)
T 1xzp_A 209 --IETNTGE-VVTRLERIKEKLTEELKKADAGILLN--R-------GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG 276 (482)
T ss_dssp --CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--H-------CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC
T ss_pred --ccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhcc--C-------CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC
Confidence 44 5666 89999999999998866554333222 2 37899999999999999999999864 4677888
Q ss_pred ceecCceeEEEecCCceEEEeeccccc-ccchhhHHHH--HHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcC
Q 007583 330 ATLDPRLKSVVLPSGRKVLLSDTVGFI-SDLPLQLVDA--FHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVG 406 (597)
Q Consensus 330 ~Tld~t~~~i~l~~g~~i~LiDTpG~i-~~lp~~lve~--f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lg 406 (597)
+|.++....+.+ ++..+.+|||||+. .. .+.++. +..++..+..+|++++|+|++++...+.. .+++. +.
T Consensus 277 TT~d~~~~~i~~-~g~~~~l~DTaG~~~~~--~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~~---l~ 349 (482)
T 1xzp_A 277 TTRDVISEEIVI-RGILFRIVDTAGVRSET--NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILER---IK 349 (482)
T ss_dssp CSSCSCCEEEEE-TTEEEEEEESSCCCSSC--CTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHHH---HT
T ss_pred eeeeeEEEEEec-CCeEEEEEECCCccccc--hhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHHH---hc
Confidence 899998888888 78899999999996 32 222222 24566778889999999999887544433 23233 21
Q ss_pred CCccCCCcEEEEEecCCCCC
Q 007583 407 VSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 407 i~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|+|+|+||+|+..
T Consensus 350 -----~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 350 -----NKRYLVVINKVDVVE 364 (482)
T ss_dssp -----TSSEEEEEEECSSCC
T ss_pred -----CCCEEEEEECccccc
Confidence 259999999999853
No 4
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.81 E-value=5.1e-19 Score=187.24 Aligned_cols=168 Identities=21% Similarity=0.199 Sum_probs=113.9
Q ss_pred CCChhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCCc
Q 007583 248 GAGETELQLQRRRILERRSHL----LSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLF 323 (597)
Q Consensus 248 g~ge~~~e~~rr~i~~ri~~l----~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~ 323 (597)
|+++...+..++.+..++..+ ..+++.+.+.+...+..+. ...+.++|+++|++|||||||+|+|++....
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~~~~~v~lvG~~gvGKSTLin~L~~~~~~ 193 (357)
T 2e87_A 119 SNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPV-----VDLEIPTVVIAGHPNVGKSTLLKALTTAKPE 193 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCC-----CCSSSCEEEEECSTTSSHHHHHHHHCSSCCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----cCCCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 567888888888888888766 5555556555544333221 1135789999999999999999999998766
Q ss_pred ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHHhcCEEEEEEeCCCCC---hHHHHHHHH
Q 007583 324 SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVVEADLLVHVLDCTAPN---LEEHRTTVL 399 (597)
Q Consensus 324 ~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~~aDliL~VvDas~~~---~~~~~~~v~ 399 (597)
..+.++.|.+.....+.. .+..+.++||||+....++...... .........+|.+++|+|++++. ...+...+.
T Consensus 194 ~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~ 272 (357)
T 2e87_A 194 IASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFE 272 (357)
T ss_dssp EECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHH
T ss_pred cCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHH
Confidence 666778887777776665 5778999999999765433221111 12222234599999999988753 333333333
Q ss_pred HHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 400 QVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 400 ~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+....+ ..|+|+|+||+|+..
T Consensus 273 ~i~~~~~-----~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 273 EVHGEFK-----DLPFLVVINKIDVAD 294 (357)
T ss_dssp HHHHHTT-----TSCEEEEECCTTTCC
T ss_pred HHHHhcC-----CCCEEEEEECcccCC
Confidence 3333332 249999999999864
No 5
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.6e-19 Score=192.44 Aligned_cols=164 Identities=20% Similarity=0.215 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc
Q 007583 256 LQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR 335 (597)
Q Consensus 256 ~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t 335 (597)
.....++.|+++|+++|...++.+...+.++. =...++|...|+|||+||+|||||||+|++....+.+++|+|++|.
T Consensus 33 ~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~--f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~ 110 (376)
T 4a9a_A 33 FHLGQLKAKLAKLRRELLTSASSGSGGGAGIG--FDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTV 110 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------CCSBT--TTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCC--ceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeee
Confidence 34556777778888888765543321111110 0014568899999999999999999999999988999999999999
Q ss_pred eeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcE
Q 007583 336 LKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM 415 (597)
Q Consensus 336 ~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~ 415 (597)
.+.+.+ .+.++.++||||++.. +.........++..+..||++++|+|+++| ....+.+...|...++.. ..+|.
T Consensus 111 ~g~~~~-~~~~i~l~D~pGl~~~-a~~~~~~g~~~l~~i~~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l-~~k~~ 185 (376)
T 4a9a_A 111 PGVIRY-KGAKIQMLDLPGIIDG-AKDGRGRGKQVIAVARTCNLLFIILDVNKP--LHHKQIIEKELEGVGIRL-NKTPP 185 (376)
T ss_dssp EEEEEE-TTEEEEEEECGGGCCC------CHHHHHHHHHHHCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEE-TCCCC
T ss_pred eEEEEe-CCcEEEEEeCCCccCC-chhhhHHHHHHHHHHHhcCccccccccCcc--HHHHHHHHHHHHHhhHhh-ccCCh
Confidence 999988 7889999999999865 333333456678889999999999999875 455666777787776532 23588
Q ss_pred EEEEecCCCCC
Q 007583 416 IEVWNKIDYHD 426 (597)
Q Consensus 416 IiVlNKiDl~~ 426 (597)
++++||+|...
T Consensus 186 ~i~~nK~d~~g 196 (376)
T 4a9a_A 186 DILIKKKEKGG 196 (376)
T ss_dssp CEEEEECSSSC
T ss_pred hhhhhHhhhhh
Confidence 99999999754
No 6
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=2.3e-18 Score=178.81 Aligned_cols=125 Identities=24% Similarity=0.274 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCceeEEEecCCceEEEeecccccccch-hhHHHHH-HHhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP-LQLVDAF-HATLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp-~~lve~f-~sTl~ 372 (597)
....|+++|.+|||||||+|+|+|..+.. ...+.+|.....+......+.++.++||||+..... ..+.+.+ ..+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 45799999999999999999999988654 444555555544545552288999999999975321 2233333 34556
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|++++........+.+.+...+ .|+|+|+||+|+..
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~------~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKPLN------KPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGC------CCEEEEEECGGGSS
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcC------CCEEEEEECccCCC
Confidence 6778999999999998755544443345554433 49999999999873
No 7
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=7.7e-19 Score=185.31 Aligned_cols=126 Identities=30% Similarity=0.404 Sum_probs=98.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~l 374 (597)
++.|+|+|++|||||||+|+|++....+.+++|+|+.|+.+.+.+.++..+.++||||+++.... .+...| +.++
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~f---l~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQF---LRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHH---HHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHH---HHHH
Confidence 56899999999999999999999887778889999999999888866689999999999753221 232333 5667
Q ss_pred HhcCEEEEEEeCCC---CChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTA---PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~---~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|+++||+|+++ ....+....+...|..+.- ....+|+++|+||+|+..
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~-~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL-RLTERPQIIVANKMDMPE 288 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-STTTSCBCBEEECTTSTT
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh-hhcCCCEEEEEECccCCC
Confidence 77999999999987 4555666667677776542 112369999999999864
No 8
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=1e-18 Score=191.39 Aligned_cols=150 Identities=25% Similarity=0.289 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCc
Q 007583 257 QRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPR 335 (597)
Q Consensus 257 ~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t 335 (597)
+++.+..++..+.++++++.+.+...+..|. ..+|+|+|++|+|||||+|+|++.... ..+.+++|.+..
T Consensus 193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~---------~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~ 263 (462)
T 3geh_A 193 DDEAIISDIENIAAEISQLLATKDKGELLRT---------GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV 263 (462)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTTHHHHHHHHH---------CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---------CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEE
Confidence 4566777888888888887665543333222 267999999999999999999987543 455667777776
Q ss_pred eeEEEecCCceEEEeecccccccchhhHHHHH--HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCC
Q 007583 336 LKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLK 413 (597)
Q Consensus 336 ~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f--~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~ 413 (597)
...+.+ +|.++.+|||||+.. +.+.++.+ ..+...+..+|++++|+|++++..... . .++..+.- +
T Consensus 264 ~~~i~~-~g~~v~liDT~G~~~--~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~---~i~~~l~~-----~ 331 (462)
T 3geh_A 264 ESQLVV-GGIPVQVLDTAGIRE--TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-Q---EIYEQVKH-----R 331 (462)
T ss_dssp HHEEEE-TTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHH-H---HHHHHHTT-----S
T ss_pred EEEEEE-CCEEEEEEECCcccc--chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-H---HHHHhccC-----C
Confidence 667776 789999999999954 33334443 456667788999999999998744333 2 33333332 4
Q ss_pred cEEEEEecCCCCCc
Q 007583 414 NMIEVWNKIDYHDE 427 (597)
Q Consensus 414 P~IiVlNKiDl~~~ 427 (597)
|+|+|+||+|+.+.
T Consensus 332 piivV~NK~Dl~~~ 345 (462)
T 3geh_A 332 PLILVMNKIDLVEK 345 (462)
T ss_dssp CEEEEEECTTSSCG
T ss_pred cEEEEEECCCCCcc
Confidence 99999999998654
No 9
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.77 E-value=1.2e-19 Score=201.75 Aligned_cols=235 Identities=16% Similarity=0.040 Sum_probs=135.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC----------------------cccccccceecCceeEEEecCCceEEEeeccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL----------------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVG 354 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v----------------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG 354 (597)
.++|+|+|++|||||||+|+|++... ..+...+.|.......+.+ .+..+.||||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTPG 91 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECCC
Confidence 48999999999999999999972211 0112345666666667776 688999999999
Q ss_pred ccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-ccc
Q 007583 355 FISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVE 433 (597)
Q Consensus 355 ~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~ 433 (597)
+.+.. ..+...+..+|++++|+|++++ ...+...++..+...++ |+|+|+||+|+...... .++
T Consensus 92 ~~df~--------~~~~~~l~~aD~allVvDa~~g-~~~~t~~~~~~~~~~~i------PiivviNK~Dl~~~~~~~~l~ 156 (528)
T 3tr5_A 92 HADFT--------EDTYRTLTAVDSALMVIDAAKG-VEPRTIKLMEVCRLRHT------PIMTFINKMDRDTRPSIELLD 156 (528)
T ss_dssp STTCC--------HHHHHGGGGCSEEEEEEETTTC-SCHHHHHHHHHHHTTTC------CEEEEEECTTSCCSCHHHHHH
T ss_pred chhHH--------HHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCC------CEEEEEeCCCCccccHHHHHH
Confidence 95421 2345567789999999999987 34555566666666654 99999999999765432 133
Q ss_pred cccccc----cccccc---ccccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCch
Q 007583 434 YIDGDD----ISNFSR---AEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVE 506 (597)
Q Consensus 434 ~i~~~~----~~~~~s---a~~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~ 506 (597)
++...+ .+...+ .....|+-++....++.+....+..... .+.....++..++.++.+. .
T Consensus 157 ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~------~ 223 (528)
T 3tr5_A 157 EIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGE-------SERIEGINNPELDKKLGDL------A 223 (528)
T ss_dssp HHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTC-------SCEEECTTCHHHHHHHTHH------H
T ss_pred HHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccc-------cccccccchHHHHHHHHHH------H
Confidence 333222 111111 1223445555444444332211111110 1111122222333333211 1
Q ss_pred hhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 507 EEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 507 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
++|++...........-...+...+.++| |+++||++|.||++||++|.+.+..
T Consensus 224 ~~~~e~~~l~~~~~~~~~~~~~~~~~~~P----V~~gSA~~~~GV~~Lld~i~~~~p~ 277 (528)
T 3tr5_A 224 SELRNEIELVKGASHPFEREGYLKGELTP----IFFGSAINNFGVGELLDAFVKEAPP 277 (528)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHTTSEEE----EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred HHHhhhcchhhhhhhHHHHHHHhcCceeE----EEeccccCCccHHHHHHHHHHhCCC
Confidence 22222111000000000133444555555 9999999999999999999998765
No 10
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=5.3e-19 Score=202.57 Aligned_cols=245 Identities=16% Similarity=0.126 Sum_probs=142.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHc---CCCc---------c------cccccceecCceeEEEecCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSD---SDLF---------S------DARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g---~~v~---------~------~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
..++|+|+|++|+|||||+|+|++ .... . +.....|+......+.+ ++..+.+|||||+..
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcc
Confidence 578999999999999999999994 2100 0 11234555555556666 678999999999954
Q ss_pred cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-cccccc
Q 007583 358 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~ 436 (597)
.. ..+...+..+|++++|+|++++.. .+...++..+...++ |+|+|+||+|+...+.. .++++.
T Consensus 88 f~--------~~~~~~l~~aD~~llVvDa~~g~~-~~~~~~~~~~~~~~~------p~ilviNK~Dl~~~~~~~~~~~l~ 152 (693)
T 2xex_A 88 FT--------VEVERSLRVLDGAVTVLDAQSGVE-PQTETVWRQATTYGV------PRIVFVNKMDKLGANFEYSVSTLH 152 (693)
T ss_dssp CC--------HHHHHHHHHCSEEEEEEETTTBSC-HHHHHHHHHHHHTTC------CEEEEEECTTSTTCCHHHHHHHHH
T ss_pred hH--------HHHHHHHHHCCEEEEEECCCCCCc-HHHHHHHHHHHHcCC------CEEEEEECCCccccchHHHHHHHH
Confidence 21 123445667999999999988643 444555566666554 89999999999875421 133333
Q ss_pred ccc----ccccccccccCCCCcc---cccccccCCC-CCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhh
Q 007583 437 GDD----ISNFSRAEDKDTTSEP---VDVECIDNYG-GDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEE 508 (597)
Q Consensus 437 ~~~----~~~~~sa~~~~gi~eL---~~~~~~~~~~-e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~ 508 (597)
..+ .....+...+.++..+ +...... +. +.+........+..+.+.....++.+++.+. +.++.++ +.
T Consensus 153 ~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~-e~dd~l~--e~ 228 (693)
T 2xex_A 153 DRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFK-YTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVA-ETSDELM--EK 228 (693)
T ss_dssp HHHCCCEEESEEEECCGGGCCEEEETTTTEEEE-CCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHH-TTCHHHH--HH
T ss_pred HHhCCCceeEEeecccCCCcceeeeeecceeEE-eccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh-hCCHHHH--HH
Confidence 221 1111222223333333 1111111 11 1010000011222233334444445555332 3333333 56
Q ss_pred hhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 509 FWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 509 y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
|+++......+....++.....+.++| |+++||.+|.|++.||++|.+++..
T Consensus 229 ~l~~~~~~~~~~~~~l~~~~~~~~~~P----v~~gSA~~~~Gv~~LLd~i~~~lPs 280 (693)
T 2xex_A 229 YLGDEEISVSELKEAIRQATTNVEFYP----VLCGTAFKNKGVQLMLDAVIDYLPS 280 (693)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSCEE----EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HhcCCCCCHHHHHHHHHHHHHhCCeee----EEEeecccCcCHHHHHHHHHHHCCC
Confidence 666655555455555666677777766 9999999999999999999999854
No 11
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.7e-18 Score=198.70 Aligned_cols=246 Identities=16% Similarity=0.086 Sum_probs=142.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc------c------------cccccceecCceeEEEecCC-------ceEEEe
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF------S------------DARLFATLDPRLKSVVLPSG-------RKVLLS 350 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~------~------------~~~~f~Tld~t~~~i~l~~g-------~~i~Li 350 (597)
..++|+|+|+.|+|||||+++|+..... + +...+.|+......+.+ .+ ..+.||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINII 87 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEE
Confidence 5689999999999999999999743210 0 00223444444444555 33 788999
Q ss_pred ecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc
Q 007583 351 DTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 430 (597)
Q Consensus 351 DTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~ 430 (597)
||||+.+. ...+...+..+|++++|+|++++. ..+...++..+...++ |+++|+||+|+...+..
T Consensus 88 DTPG~~df--------~~~~~~~l~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~i------p~ilviNKiD~~~~~~~ 152 (704)
T 2rdo_7 88 DTPGHVDF--------TIEVERSMRVLDGAVMVYCAVGGV-QPQSETVWRQANKYKV------PRIAFVNKMDRMGANFL 152 (704)
T ss_pred eCCCccch--------HHHHHHHHHHCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC------CEEEEEeCCCcccccHH
Confidence 99999431 122445667799999999999873 4455556666655554 89999999999876532
Q ss_pred -ccccccccc----cccccccc---ccCCCCcccccccccCCCCC-CCCCCCCCcccchhhhhhcccchhhhhhhhcCCC
Q 007583 431 -DVEYIDGDD----ISNFSRAE---DKDTTSEPVDVECIDNYGGD-DADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDE 501 (597)
Q Consensus 431 -~~~~i~~~~----~~~~~sa~---~~~gi~eL~~~~~~~~~~e~-~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~ 501 (597)
.++++...+ .+...+.. ...|+.++.....+.+.... +.......++.++.+.+.+.+..+++... +.++
T Consensus 153 ~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~a-e~dd 231 (704)
T 2rdo_7 153 KVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAA-EASE 231 (704)
T ss_pred HHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHH-hcCH
Confidence 133333322 11111111 12233333332222111100 10000011122233333333344443332 2222
Q ss_pred CCCchhhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 502 QDNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 502 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
+++ +.|+++.++...+....+......+.++| |+++||++|.|++.||++|.+++..
T Consensus 232 ~l~--e~~l~~~~l~~~~l~~~l~~~~~~~~~~P----v~~gSa~~~~Gv~~LLd~i~~~lPs 288 (704)
T 2rdo_7 232 ELM--EKYLGGEELTEAEIKGALRQRVLNNEIIL----VTCGSAFKNKGVQAMLDAVIDYLPS 288 (704)
T ss_pred HHH--HHHhcCCCCCHHHHHHHHHHHHHhCCeeE----EEEeecccCccHHHHHHHHHHHCCC
Confidence 222 55666555555555555666666676666 9999999999999999999998754
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.77 E-value=5.1e-18 Score=160.13 Aligned_cols=124 Identities=20% Similarity=0.170 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..+|+|+|++|+|||||+|+|++.... ....++.|.+.....+.+ ++..+.+|||||+.......-...+..+...+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 368999999999999999999997642 344556666666666766 677899999999864321111112334556788
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
.+|++++|+|++++...... .++..+..... ...|+|+|+||+|+.
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~---~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPA-EIWPEFIARLP---AKLPITVVRNKADIT 128 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHH-HHCHHHHHHSC---TTCCEEEEEECHHHH
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHHHHHhcc---cCCCEEEEEECccCC
Confidence 99999999999876443322 33333333221 125999999999974
No 13
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.76 E-value=2.5e-18 Score=167.50 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=84.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC-C-cccccccceecCceeEEEecCCceEEEeeccccccc-chhhHHHHH----H
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD-L-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD-LPLQLVDAF----H 368 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~-v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~-lp~~lve~f----~ 368 (597)
+.++|+|+|.+|+|||||+|+|++.. . .....++.|.......+...++..+.+|||||+... .+....+.+ .
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 56899999999999999999999986 2 344445555554444444345688999999997542 111111222 2
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 369 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 369 sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+.....+|++++|+|++++.. .....+...+...+ .|+|+|+||+|+....
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~~~------~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAPTG------KPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGGGC------CCEEEEEECGGGSCHH
T ss_pred HHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHhcC------CCEEEEEeccccCChh
Confidence 33334445889999999987633 33444555555543 3999999999987643
No 14
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.76 E-value=8.4e-19 Score=195.82 Aligned_cols=234 Identities=16% Similarity=0.080 Sum_probs=136.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC----------------------CcccccccceecCceeEEEecCCceEEEeeccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD----------------------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVG 354 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~----------------------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG 354 (597)
.++|||+||.++|||||..+|+-.. ...+...+.|+......+.+ ++..++|+||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPG 109 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTPG 109 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCCC
Confidence 3699999999999999999996211 12345667788888888888 889999999999
Q ss_pred ccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccccc-cc
Q 007583 355 FISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VE 433 (597)
Q Consensus 355 ~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~~-~~ 433 (597)
+.+. . ..+.+.+..+|.+++|+|+..+ .+.+.+.+++.+.+.++ |.|+++||+|+...+... ++
T Consensus 110 HvDF-----~---~Ev~raL~~~DgAvlVvda~~G-V~~qT~~v~~~a~~~~l------p~i~fINK~Dr~~ad~~~~~~ 174 (548)
T 3vqt_A 110 HQDF-----S---EDTYRVLTAVDSALVVIDAAKG-VEAQTRKLMDVCRMRAT------PVMTFVNKMDREALHPLDVMA 174 (548)
T ss_dssp GGGC-----S---HHHHHHHHSCSEEEEEEETTTB-SCHHHHHHHHHHHHTTC------CEEEEEECTTSCCCCHHHHHH
T ss_pred cHHH-----H---HHHHHHHHhcCceEEEeecCCC-cccccHHHHHHHHHhCC------ceEEEEecccchhcchhHhhh
Confidence 9542 2 2234556779999999999987 78899999999999997 899999999998877432 55
Q ss_pred cccccc----cccccccc---ccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCc-
Q 007583 434 YIDGDD----ISNFSRAE---DKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNV- 505 (597)
Q Consensus 434 ~i~~~~----~~~~~sa~---~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~- 505 (597)
++...+ .+...+.+ ...|+-++.+...+.+............ .+...++..++.++....+....
T Consensus 175 ~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 247 (548)
T 3vqt_A 175 DIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGI-------VIHGADDPQLDEYLGDQAEQLRMD 247 (548)
T ss_dssp HHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCE-------ECCSTTCTHHHHHHGGGHHHHHHH
T ss_pred hhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccc-------cccccchHHHHHHHHHHHHHhhhH
Confidence 555544 12222222 2334444444444433222211111000 01111112222222111100000
Q ss_pred hhhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 506 EEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 506 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
.+.+....... . ......|.++| |+|+||.+|.||++||++|.+.+..
T Consensus 248 ~~l~~~~~~~~-----~--~e~~~~g~~~P----V~~gSA~~~~Gv~~LLd~iv~~~Ps 295 (548)
T 3vqt_A 248 LALLEEAGTPF-----D--EERYLKGELTP----VFFGSAINNFGVREMLDMFVEFAPG 295 (548)
T ss_dssp HHHHHHHCCCC-----C--HHHHHTTSEEE----EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred HHHHhhccCch-----h--HHHHHhCCcce----eeecccccCcCHHHHHHHHHHhCCC
Confidence 00011000000 0 11223344555 9999999999999999999998764
No 15
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=9.5e-19 Score=200.42 Aligned_cols=246 Identities=14% Similarity=0.072 Sum_probs=140.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC---C-----Cc----------ccccccceecCceeEEEecCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS---D-----LF----------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~---~-----v~----------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
..++|+|+|++|+|||||+++|+.. . +. .+.....|+......+.+ .+..+.+|||||+..
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccc
Confidence 4689999999999999999999831 1 00 011334555555555665 678899999999953
Q ss_pred cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-cccccc
Q 007583 358 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~ 436 (597)
. ...+...+..+|++++|+|++++.. .+...++..+...++ |+++|+||+|+...+.. .++++.
T Consensus 90 f--------~~~~~~~l~~aD~~ilVvDa~~g~~-~~t~~~~~~~~~~~~------p~ivviNKiD~~~~~~~~~~~~l~ 154 (691)
T 1dar_A 90 F--------TIEVERSMRVLDGAIVVFDSSQGVE-PQSETVWRQAEKYKV------PRIAFANKMDKTGADLWLVIRTMQ 154 (691)
T ss_dssp C--------HHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHHTTC------CEEEEEECTTSTTCCHHHHHHHHH
T ss_pred h--------HHHHHHHHHHCCEEEEEEECCCCcc-hhhHHHHHHHHHcCC------CEEEEEECCCcccCCHHHHHHHHH
Confidence 1 1223455677999999999998744 444455556666554 89999999999876422 133333
Q ss_pred cccc----ccccccccc---CCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhh
Q 007583 437 GDDI----SNFSRAEDK---DTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEF 509 (597)
Q Consensus 437 ~~~~----~~~~sa~~~---~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y 509 (597)
..+. ....+...+ .|+.+++......+..+.+........+..+.+.....++.+.+... +.++.++ +.|
T Consensus 155 ~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~-e~dd~l~--e~~ 231 (691)
T 1dar_A 155 ERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAA-DFDENIM--LKY 231 (691)
T ss_dssp HTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHT-TTCHHHH--HHH
T ss_pred HHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh-hCCHHHH--HHH
Confidence 2221 111111111 12222222222211101000000011222334444444445554332 2232223 556
Q ss_pred hcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 510 WNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
+++.+....+.....+.....+.++| |+++||.+|.|+++||++|.+++..
T Consensus 232 l~~~~~~~~~~~~~~~~~~~~~~~~P----v~~gSA~~~~Gv~~LLd~i~~~lPs 282 (691)
T 1dar_A 232 LEGEEPTEEELVAAIRKGTIDLKITP----VFLGSALKNKGVQLLLDAVVDYLPS 282 (691)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTSCEE----EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred HCCCCCCHHHHHHHHHHHHHhCcEeE----EEEeecccCcCHHHHHHHHHHhCCC
Confidence 66655555444555666666676666 9999999999999999999999854
No 16
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.75 E-value=7.7e-18 Score=174.55 Aligned_cols=124 Identities=24% Similarity=0.295 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccc-ccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l 374 (597)
...|+|+|++|+|||||+|+|+|..+... ..+.+|.+. ...+...++.++.++||||+.... ..+.+.| ..+...+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~-i~~i~~~~~~~l~l~DTpG~~~~~-~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR-LRGILTEGRRQIVFVDTPGLHKPM-DALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC-EEEEEEETTEEEEEEECCCCCCCC-SHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEE-EEEEEEeCCcEEEEecCccccchh-hHHHHHHHHHHHHHH
Confidence 46899999999999999999999886543 334444443 333333467899999999997532 2223333 3355667
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++.. .....+++.+.... ...|+|+|+||+|+...
T Consensus 85 ~~ad~il~VvD~~~~~~-~~~~~i~~~l~~~~----~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPT-PEDELVARALKPLV----GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp SSCSEEEEEEETTSCCC-HHHHHHHHHHGGGT----TTSCEEEEEECGGGCSS
T ss_pred hcCCEEEEEEECCCCCC-hHHHHHHHHHHhhc----CCCCEEEEEECcccCCc
Confidence 88999999999988633 33344445555441 12499999999998643
No 17
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=2.3e-17 Score=154.04 Aligned_cols=119 Identities=24% Similarity=0.302 Sum_probs=78.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
..+|+++|++|+|||||+|+|++........++.|.+...+.+.+ ++..+.+|||||+....+....+...........
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 378999999999999999999997655555556666776767766 6788999999998654332211222111112247
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+|++++|+|+++. . ....+...+...+ .|+|+|+||+|+.
T Consensus 82 ~~~~i~v~D~~~~--~-~~~~~~~~~~~~~------~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 82 PDLVVNIVDATAL--E-RNLYLTLQLMEMG------ANLLLALNKMDLA 121 (165)
T ss_dssp CSEEEEEEETTCH--H-HHHHHHHHHHHTT------CCEEEEEECHHHH
T ss_pred CCEEEEEecCCch--h-HhHHHHHHHHhcC------CCEEEEEEchHhc
Confidence 9999999999763 2 2222333333333 4999999999974
No 18
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.74 E-value=3.9e-17 Score=149.81 Aligned_cols=119 Identities=24% Similarity=0.216 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~ 375 (597)
++|+++|.+|+|||||+|+|.+.... ....++.|.+.....+.. ++..+.+|||||+..... +...+ ......+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK--WEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSSS--CCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCccc--hHHHHHHHHHHHHH
Confidence 78999999999999999999987643 344455555666666666 677899999999965321 11222 23345567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++.. .....+..++...+ .|+++|+||+|+.+
T Consensus 79 ~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~------~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELT-QADYEVAEYLRRKG------KPVILVATKVDDPK 122 (161)
T ss_dssp TCSEEEEEEESSSCCC-HHHHHHHHHHHHHT------CCEEEEEECCCSGG
T ss_pred hCCEEEEEEECCCccc-HhHHHHHHHHHhcC------CCEEEEEECccccc
Confidence 8999999999988633 33345556666644 39999999999864
No 19
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.74 E-value=2.2e-18 Score=174.57 Aligned_cols=119 Identities=20% Similarity=0.258 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh----hHHHHHHHhHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL----QLVDAFHATLEE 373 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~----~lve~f~sTl~~ 373 (597)
|+|+++|.+|||||||+|+|+|........++.|.+...+.+.+ ++..+.++||||+.+..+. ...+........
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 68999999999999999999998866777778887777777777 6779999999999765443 332333222222
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
...+|++++|+|+++. +....+...+.+++ .|+|+|+||+|+..
T Consensus 81 ~~~~d~vi~VvDas~~---~~~~~l~~~l~~~~------~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 81 DLEYDCIINVIDACHL---ERHLYLTSQLFELG------KPVVVALNMMDIAE 124 (256)
T ss_dssp HSCCSEEEEEEEGGGH---HHHHHHHHHHTTSC------SCEEEEEECHHHHH
T ss_pred hCCCCEEEEEeeCCCc---hhHHHHHHHHHHcC------CCEEEEEEChhcCC
Confidence 3679999999999863 23333444444444 39999999999854
No 20
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=1.1e-17 Score=181.65 Aligned_cols=120 Identities=28% Similarity=0.310 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l~ 375 (597)
|+|+|||.+|+|||||+|+|++.... +.+.++.|.+...+.+.+ ++..+.+|||||+.......+.+.+ ..+...+.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 78999999999999999999997743 567778888888888887 7889999999998653222222333 34667788
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
.||++++|+|++.+... ....+.++|...+ +|+++|+||+|+.
T Consensus 81 ~ad~il~V~D~~~~~~~-~d~~i~~~l~~~~------~p~ilv~NK~D~~ 123 (439)
T 1mky_A 81 EADLVLFVVDGKRGITK-EDESLADFLRKST------VDTILVANKAENL 123 (439)
T ss_dssp TCSEEEEEEETTTCCCH-HHHHHHHHHHHHT------CCEEEEEESCCSH
T ss_pred hCCEEEEEEECCCCCCH-HHHHHHHHHHHcC------CCEEEEEeCCCCc
Confidence 99999999999876433 3345667777655 3999999999974
No 21
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.73 E-value=5e-18 Score=173.31 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccch----hhHHHHHHHhHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP----LQLVDAFHATLE 372 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp----~~lve~f~sTl~ 372 (597)
.++|+++|.+|||||||+|+|+|........++.|.+...+.+.+ .+..+.+|||||+.+..+ ..+.+.+.....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 379999999999999999999998866667777787777777776 678899999999876432 223333333344
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
....+|++++|+|+++. +....+...+.+.++ |+|+|+||+|+..
T Consensus 82 ~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~~~~------p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 82 LSGDADLLINVVDASNL---ERNLYLTLQLLELGI------PCIVALNMLDIAE 126 (274)
T ss_dssp HHTCCSEEEEEEEGGGH---HHHHHHHHHHHHHTC------CEEEEEECHHHHH
T ss_pred hhcCCCEEEEEecCCCh---HHHHHHHHHHHhcCC------CEEEEEECccchh
Confidence 45689999999999863 333444455556654 9999999999854
No 22
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=3.8e-17 Score=152.64 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=82.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...++|+++|.+|+|||||+|+|++........+..|.+.....+.+ ++..+.+|||||+...... ....+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~--------~~~~~ 76 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM--------RARGA 76 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS--------CCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH--------HHHHH
Confidence 35689999999999999999999997765554555555555556666 6788999999998432111 11234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++......+.+ ..+... ..|+++|+||+|+...
T Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~l-~~~~~~------~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 77 QVTDIVILVVAADDGVMPQTVEAI-NHAKAA------NVPIIVAINKMDKPEA 122 (178)
T ss_dssp CCCCEEEEEEETTCCCCHHHHHHH-HHHGGG------SCCEEEEEETTTSSCS
T ss_pred hhCCEEEEEEECCCCCcHHHHHHH-HHHHhC------CCCEEEEEECccCCcC
Confidence 568999999999886444443332 222222 2499999999998753
No 23
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.72 E-value=2.6e-17 Score=166.73 Aligned_cols=120 Identities=23% Similarity=0.247 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
.++|+|+|.+|+|||||+|+|+|........++.|.+...+.+.. .+..+.+|||||+.+..+....+...........
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 83 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGD 83 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence 478999999999999999999998766666777777776666665 6789999999999765443322322222222257
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|+++. .... .+...+.+.+ .|+++|+||+|+..
T Consensus 84 ~d~ii~V~D~t~~--~~~~-~~~~~l~~~~------~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 84 ADLVILVADSVNP--EQSL-YLLLEILEME------KKVILAMTAIDEAK 124 (258)
T ss_dssp CSEEEEEEETTSC--HHHH-HHHHHHHTTT------CCEEEEEECHHHHH
T ss_pred CCEEEEEeCCCch--hhHH-HHHHHHHhcC------CCEEEEEECcCCCC
Confidence 9999999999875 2222 2333344444 39999999999743
No 24
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.72 E-value=1.1e-16 Score=151.54 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCceeEEEecCCceEEEeecccccccch-hhHHHHHH----
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP-LQLVDAFH---- 368 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp-~~lve~f~---- 368 (597)
...++|+++|++|+|||||+|+|++..... ....+.|.... ....+..+.++||||+..... ....+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSIN----FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEE----EEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeE----EEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 356899999999999999999999986322 22222222221 122355788999999643211 11112222
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 369 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 369 sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+.....+|++++|+|++.+.. .....+..++...+. |+++|+||+|+.++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~------p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQ-DSDLMMVEWMKSLNI------PFTIVLTKMDKVKM 148 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHTTC------CEEEEEECGGGSCG
T ss_pred HHHhcCcCceEEEEEecCCCCCC-HHHHHHHHHHHHcCC------CEEEEEEChhcCCh
Confidence 22333344599999999987633 334455677777654 99999999998754
No 25
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.72 E-value=2.2e-18 Score=195.73 Aligned_cols=219 Identities=16% Similarity=0.229 Sum_probs=143.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH---cCC-----C----------cccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALS---DSD-----L----------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~---g~~-----v----------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
+++|+|+||.++|||||..+|+ |.. + ..+...+.|+......+.+ ++..++|+|||||.+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 5789999999999999999996 211 0 1122345666666666666 7789999999999542
Q ss_pred chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccccc-cccccc
Q 007583 359 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 437 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~~-~~~i~~ 437 (597)
...+...++.+|.+++|+|+..+ .+.+++.++..+.+.++ |.|+++||+|+...+... ++++..
T Consensus 81 --------~~Ev~raL~~~DgavlVVDa~~G-V~~qT~~v~~~a~~~~l------p~i~~INKmDr~~a~~~~~~~~i~~ 145 (638)
T 3j25_A 81 --------LAEVYRSLSVLDGAILLISAKDG-VQAQTRILFHALRKMGI------PTIFFINKIDQNGIDLSTVYQDIKE 145 (638)
T ss_dssp --------HHHHHHHHTTCSEEECCEESSCT-TCSHHHHHHHHHHHHTC------SCEECCEECCSSSCCSHHHHHHHHH
T ss_pred --------HHHHHHHHHHhCEEEEEEeCCCC-CcHHHHHHHHHHHHcCC------CeEEEEeccccccCCHHHHHHHHHH
Confidence 22345567789999999999987 67888999999999998 789999999998776432 444443
Q ss_pred ccccccccccccCCCCcccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhhhcccCCCC
Q 007583 438 DDISNFSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQ 517 (597)
Q Consensus 438 ~~~~~~~sa~~~~gi~eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y~~~~~~~~ 517 (597)
.+....... +..++ +.+. ....+......+.+.+.++++++.|++. ...+.
T Consensus 146 ~l~~~~~~~----~~~~~--------~~~~---~~~~~~~~~~~e~~~e~~d~l~e~~~~~--------------~~~~~ 196 (638)
T 3j25_A 146 KLSAEIVIK----QKVEL--------YPNV---CVTNFTESEQWDTVIEGNDDLLEKYMSG--------------KSLEA 196 (638)
T ss_dssp TTCCCCCCC----CCCCS--------CGGG---CCCCCCCHHHHHHHHHHHCHHHHHHHHH--------------CCCCS
T ss_pred HhCCCcccc----ceeEe--------eccc---cccccchhhhhhhhhcccHHHHhhhccC--------------Cccch
Confidence 331110000 00011 1000 0011222334455555666666665543 33333
Q ss_pred CccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 518 PESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 518 ~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
.+...........+.++| |+++||.+|.||++||++|.+.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~P----v~~gSa~~~~Gv~~LLd~i~~~~p~ 239 (638)
T 3j25_A 197 LELEQEESIRFQNCSLFP----LYHGSAKSNIGIDNLIEVITNKFYS 239 (638)
T ss_dssp HHHHHHHHHHHHHTSCCC----CCCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhhhccccccc----ccccccccCCCchhHhhhhhccccC
Confidence 333344455555566665 9999999999999999999987654
No 26
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.72 E-value=6.9e-17 Score=153.46 Aligned_cols=120 Identities=22% Similarity=0.177 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||...... .....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~ 85 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT--------ITSSY 85 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT--------THHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh--------hHHHH
Confidence 4579999999999999999999987755544445555555556666 44 4678999999743211 12334
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+.+.
T Consensus 86 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCTTT
T ss_pred HhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccccc
Confidence 6779999999999876433333444444444322 23599999999998654
No 27
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=6e-17 Score=175.84 Aligned_cols=124 Identities=21% Similarity=0.296 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchh-hHHHHH--HHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL-QLVDAF--HATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~-~lve~f--~sTl 371 (597)
+.++|+++|++|+|||||+|+|++.... ....+++|.+.....+.+ ++..+.+|||||+.+.... +..+.| ..++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 5689999999999999999999998754 556677777776666766 7788999999999643221 111233 2345
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+..+|++++|+|++++...+.. .+...+...+ +|+|+|+||+|+.+.
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~~------~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEAG------KAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHTT------CEEEEEEECGGGSCC
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHcC------CcEEEEEECccCCCc
Confidence 677889999999999987554443 4445555444 499999999998754
No 28
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.72 E-value=6.8e-18 Score=187.72 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=131.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcc----------------------cccccceecCceeEEEecCCceEEEeeccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFS----------------------DARLFATLDPRLKSVVLPSGRKVLLSDTVG 354 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~----------------------~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG 354 (597)
.++|+|+|++|||||||+++|++..... +...+.|.......+.+ .+..+.++||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTPG 91 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTPG 91 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECCC
Confidence 4799999999999999999999642111 11223344444445555 678899999999
Q ss_pred ccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-ccc
Q 007583 355 FISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVE 433 (597)
Q Consensus 355 ~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~ 433 (597)
+.... ..+...+..+|++++|+|++++ ...+...++..+...++ |+++|+||+|+...... .++
T Consensus 92 ~~df~--------~~~~~~l~~aD~~IlVvDa~~g-~~~~t~~~~~~~~~~~i------piivviNK~Dl~~~~~~~~~~ 156 (529)
T 2h5e_A 92 HEDFS--------EDTYRTLTAVDCCLMVIDAAKG-VEDRTRKLMEVTRLRDT------PILTFMNKLDRDIRDPMELLD 156 (529)
T ss_dssp STTCC--------HHHHHGGGGCSEEEEEEETTTC-SCHHHHHHHHHHTTTTC------CEEEEEECTTSCCSCHHHHHH
T ss_pred ChhHH--------HHHHHHHHHCCEEEEEEeCCcc-chHHHHHHHHHHHHcCC------CEEEEEcCcCCccccHHHHHH
Confidence 94321 2234556789999999999987 34555555555554444 89999999999876431 133
Q ss_pred cccccc----cc---ccccccccCCCCcccccccccCCCCCCCCCCC-CCcc----cchhhhhhcccchhhhhhhhcCCC
Q 007583 434 YIDGDD----IS---NFSRAEDKDTTSEPVDVECIDNYGGDDADNND-GFVS----EDLGESMNKNHNDYSDGWLLSGDE 501 (597)
Q Consensus 434 ~i~~~~----~~---~~~sa~~~~gi~eL~~~~~~~~~~e~~~~~~~-~~~~----~~~~e~~~~~~~~l~e~~l~e~~~ 501 (597)
++...+ .+ ...++..+.|+.++.+.....+....+..... ..++ ..+.+. .++.+++.+.++.+
T Consensus 157 ~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~---~~~~~~~~~~e~~~- 232 (529)
T 2h5e_A 157 EVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA---VGEDLAQQLRDELE- 232 (529)
T ss_dssp HHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHH---HCHHHHHHHHHHHH-
T ss_pred HHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHh---hCHHHHHHhhcccc-
Confidence 333322 11 11456677788777655444332211110000 0111 011111 12333444432211
Q ss_pred CCCchhhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 502 QDNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 502 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
+. .+++. .........+.++| |+++||++|.||++||++|.+.+..
T Consensus 233 -l~-~~~~~-----------~~~~~~~~~~~~~P----v~~gSA~~~~Gv~~LLd~i~~~~P~ 278 (529)
T 2h5e_A 233 -LV-KGASN-----------EFDKELFLAGEITP----VFFGTALGNFGVDHMLDGLVEWAPA 278 (529)
T ss_dssp -HH-HHHSC-----------CCCHHHHHTTSEEE----EEECBTTTTBSHHHHHHHHHHHSCS
T ss_pred -hh-hhhhh-----------hhhHHHHHhCceeE----EEeeecccCCCHHHHHHHHHHhCCC
Confidence 00 00000 00122333444545 9999999999999999999998865
No 29
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=1e-16 Score=174.98 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchh-hHHHHH--HHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL-QLVDAF--HATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~-~lve~f--~sTl 371 (597)
..++|+++|.+|+|||||+|+|++... .....+++|.+.....+.+ ++..+.+|||||+.+.... ...+.| ..++
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 568999999999999999999998763 4566677777777777776 7789999999997643211 111223 3355
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+..+|++++|+|++++. .++...+...+...+. |+|+|+||+|+.+.
T Consensus 273 ~~~~~ad~~llviD~~~~~-~~~~~~~~~~~~~~~~------~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGI-IEQDKRIAGYAHEAGK------AVVIVVNKWDAVDK 321 (456)
T ss_dssp HHHHHCSEEEEEEETTTCC-CHHHHHHHHHHHHTTC------EEEEEEECGGGSCC
T ss_pred HHHhhCCEEEEEEeCCCCc-CHHHHHHHHHHHHcCC------CEEEEEEChhcCCC
Confidence 6788899999999999874 4555666677766553 99999999998754
No 30
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.71 E-value=1.1e-16 Score=157.45 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhH-HHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQL-VDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~l-ve~f~sTl~~l 374 (597)
..++|+|+|.+|+|||||+|+|++.........+.|.+........ .+..+.+|||||+........ ...+.......
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 4689999999999999999999998755455556666665555555 567899999999954211111 00111212235
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++.... ......++..+.-. ....|+++|+||+|+...
T Consensus 107 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLT-IKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp TSSEEEEEEEETTCTTSSC-HHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC-
T ss_pred ccccEEEEEEecccccCcc-hHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCc
Confidence 6689999999998764322 11222333333211 012599999999998754
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=152.85 Aligned_cols=118 Identities=21% Similarity=0.155 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
..++|+++|.+|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||...... .....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~ 78 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT--------ITSTY 78 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS--------CCGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh--------hHHHH
Confidence 4689999999999999999999997755554555555555556666 45 5678999999743211 11223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+.... ...|+|+|+||+|+..
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC----DDVCRILVGNKNDDPE 127 (181)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----TTSEEEEEEECTTCGG
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECCCCch
Confidence 567999999999988633333333333333321 2359999999999754
No 32
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.70 E-value=4.1e-17 Score=165.72 Aligned_cols=121 Identities=26% Similarity=0.267 Sum_probs=86.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
.++|+|+|++|||||||+|+|+|........++.|.+.....+.+ ++..+.++||||+....+....+...........
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 589999999999999999999998766666667777776777776 6778999999999765443332323222222357
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|+++. ... ..+...+...+. .|+++|+||+|+..
T Consensus 82 ~d~vi~v~D~~~~--~~~-~~~~~~~~~~~~-----~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 82 ADVIVDIVDSTCL--MRN-LFLTLELFEMEV-----KNIILVLNKFDLLK 123 (271)
T ss_dssp CSEEEEEEEGGGH--HHH-HHHHHHHHHTTC-----CSEEEEEECHHHHH
T ss_pred CcEEEEEecCCcc--hhh-HHHHHHHHhcCC-----CCEEEEEEChhcCc
Confidence 9999999999864 222 233333444441 39999999999854
No 33
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.70 E-value=2.4e-17 Score=189.41 Aligned_cols=247 Identities=15% Similarity=0.087 Sum_probs=145.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC------------------CcccccccceecCceeEEEecC------CceEEEee
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD------------------LFSDARLFATLDPRLKSVVLPS------GRKVLLSD 351 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~------------------v~~~~~~f~Tld~t~~~i~l~~------g~~i~LiD 351 (597)
++++|+|+||.++|||||..+|+-.. ...+...+.|+..+.-.+.|.+ +..++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 57899999999999999999996211 1234456667776666676642 45789999
Q ss_pred cccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-
Q 007583 352 TVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG- 430 (597)
Q Consensus 352 TpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~- 430 (597)
||||++. .. .+...++.+|.+++|||+..+ ...+++.+++.+.+.++ |.|+|+||+|+...+..
T Consensus 92 TPGHvDF-----~~---Ev~~aLr~~DgavlvVDaveG-V~~qT~~v~~~a~~~~l------p~i~~iNKiDr~~a~~~~ 156 (709)
T 4fn5_A 92 TPGHVDF-----TI---EVERSLRVLDGAVVVFCGTSG-VEPQSETVWRQANKYGV------PRIVYVNKMDRQGANFLR 156 (709)
T ss_dssp CCSCTTC-----HH---HHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHHTC------CEEEEEECSSSTTCCHHH
T ss_pred CCCCccc-----HH---HHHHHHHHhCeEEEEEECCCC-CchhHHHHHHHHHHcCC------CeEEEEccccccCccHHH
Confidence 9999542 22 234456679999999999987 67888999999988888 89999999999877643
Q ss_pred cccccccccc----cccccccc---cCCCCcccccccccCCCCCC-CCCCCCCcccchhhhhhcccchhhhhhhhcCCCC
Q 007583 431 DVEYIDGDDI----SNFSRAED---KDTTSEPVDVECIDNYGGDD-ADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQ 502 (597)
Q Consensus 431 ~~~~i~~~~~----~~~~sa~~---~~gi~eL~~~~~~~~~~e~~-~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~ 502 (597)
.++++...+. +....... ..|.-++.+...+.+..... ........+..+.+.....+..+++.+. +.++.
T Consensus 157 ~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~d~~ 235 (709)
T 4fn5_A 157 VVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAA-EANEE 235 (709)
T ss_dssp HHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHH-TSSHH
T ss_pred HHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHH-hccHH
Confidence 2444443331 11111111 22222222222221111110 0000111222333333333333444332 22222
Q ss_pred CCchhhhhcccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 503 DNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 503 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
+ .+.|++............+......+.++| ++++||.+|.|++.||++|.+++-.
T Consensus 236 l--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p----v~~gsa~~~~gv~~lLd~i~~~lPs 291 (709)
T 4fn5_A 236 L--MNKYLEEGELSEAEIKEGLRLRTLACEIVP----AVCGSSFKNKGVPLVLDAVIDYLPA 291 (709)
T ss_dssp H--HHHHHHHSCCCHHHHHHHHHHHHHTTSCEE----EEECBTTTTBTHHHHHHHHHHHSCC
T ss_pred H--HHHHHhcCCccHHHHHHHHHHhhhhceeee----eeeeecccCCchHHHHHHHHhhCCC
Confidence 2 245555555555455555666666666666 9999999999999999999998754
No 34
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.70 E-value=1.2e-16 Score=147.88 Aligned_cols=120 Identities=17% Similarity=0.058 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+|+|++...........+.+.....+.+ ++ ..+.+|||||+..... . .....+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~--~~~~~~ 73 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-----W--LQDHCL 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC---------------CHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-----h--hhhhhh
Confidence 478999999999999999999986644443344445555555555 44 3567999999843210 0 111235
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+..... ....|+++|+||+|+.+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLAR 123 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCGG
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhccc--CCCCCEEEEeeCcchhh
Confidence 569999999999875333333322222222211 11359999999999854
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=3.6e-17 Score=177.56 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=75.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~l 374 (597)
.++|+|+|.+|+|||||+|+|+|.... ..+.++.|.+.....+.+ ++..+.+|||||+...... +.+.+ ..+...+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~-~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEP-FLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-CSSCCEEEC---------C-HHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchh-HHHHHHHHHHHHH
Confidence 379999999999999999999997643 456667777766666655 6788999999999633222 33344 3456678
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..||++++|+|++++.... ...+.++|...+ +|+++|+||+|+..
T Consensus 81 ~~ad~il~vvD~~~~~~~~-d~~~~~~l~~~~------~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAA-DEEVAKILYRTK------KPVVLAVNKLDNTE 125 (436)
T ss_dssp HHCSEEEEEEETTTCSCHH-HHHHHHHHTTCC------SCEEEEEECCCC--
T ss_pred HhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcC------CCEEEEEECccCcc
Confidence 8899999999998874433 344555555433 49999999999864
No 36
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=146.80 Aligned_cols=122 Identities=16% Similarity=0.075 Sum_probs=71.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|++|+|||||+|+|++........ ....+.....+.+ ++. .+.+|||||+...... ......
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~------~~~~~~ 74 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKS------WSQESC 74 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEE-TTEEEEEEEECCC-------C------HHHHHT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEE-CCEEEEEEEEecCCCCccchh------hhHHhh
Confidence 35799999999999999999999876432221 1112222334444 443 6789999998431001 112233
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++........+...+..... ....|+++|+||+|+.+.
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 75 LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ--ADHVPIILVGNKADLARC 126 (175)
T ss_dssp TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTT
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc--cCCCCEEEEEEChhhccc
Confidence 4568999999999876443444444444444321 123599999999998653
No 37
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=1.2e-16 Score=149.14 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=74.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHH-hHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHA-TLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~s-Tl~ 372 (597)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+.++ ..+.+|||||... +.. ...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~ 77 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER---------FQSLGVA 77 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH---------hhhhhHH
Confidence 4689999999999999999999987644333333334455555555322 4678999999732 211 223
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|++++........+.. +....+.......|+++|+||+|+..
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred HhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 4567999999999987633333333322 22222322223459999999999864
No 38
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.70 E-value=2.3e-17 Score=168.71 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
.++|+|+|.+|||||||+|+|+|....+.+.++.|.+...+.+.. +..+.+|||||+.+..+....+...........
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 478999999999999999999998766777777777766555433 678999999998754333222222211111136
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|+++. .. ...+...+.+.+. |+|+|+||+|+..
T Consensus 81 ~d~vi~V~D~t~~--e~-~~~~~~~l~~~~~------p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 81 ADSILNVVDATNL--ER-NLYLTTQLIETGI------PVTIALNMIDVLD 121 (272)
T ss_dssp CSEEEEEEEGGGH--HH-HHHHHHHHHHTCS------CEEEEEECHHHHH
T ss_pred CCEEEEEecCCch--Hh-HHHHHHHHHhcCC------CEEEEEEChhhCC
Confidence 9999999999863 22 2233344444443 9999999999753
No 39
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.69 E-value=2e-16 Score=171.89 Aligned_cols=124 Identities=27% Similarity=0.377 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHH--HHh
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAF--HAT 370 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f--~sT 370 (597)
+.++|+|+|++|||||||+|+|+|... .+.+.+++|.++..+.+.+ +|..+.++||||+...... ...+.| ..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 568999999999999999999999864 3566677777888788877 7889999999998543211 111111 234
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 371 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 371 l~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
...+..+|++++|+|++.+.... ...+...+...+. |+++|+||+|+...
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~-~~~i~~~l~~~~~------~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERRGR------ASVVVFNKWDLVVH 307 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHTTC------EEEEEEECGGGSTT
T ss_pred HHHHhhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCC------CEEEEEECccCCCc
Confidence 56678899999999998764433 3455566666554 89999999998753
No 40
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=4e-16 Score=147.90 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
..+|+++|.+|+|||||+|+|++.... ....|.......+.+ ++..+.+|||||+.... ......+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~--------~~~~~~~~~ 83 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLR--------SSWNTYYTN 83 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE---EEECCSCSSCEEEEE-TTEEEEEEECCC----C--------GGGHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCCccceEEEEE-CCEEEEEEECCCCHhHH--------HHHHHHhcC
Confidence 489999999999999999999976533 122344455556666 67899999999984321 112334677
Q ss_pred cCEEEEEEeCCCCChHHHHHHH-HHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v-~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++........+ ..++.. ......|+++|+||+|+.+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTS---GGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhc---hhhCCCeEEEEEECCCCcC
Confidence 9999999999987433333322 222221 1112359999999999864
No 41
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.69 E-value=3.3e-16 Score=145.86 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...+|+++|.+|+|||||+|+|++...........+.+.....+...+ ...+.+|||||+.... ......+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR--------AVTRSYY 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC--------HHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh--------hhHHHHh
Confidence 358999999999999999999998764332222222222233344422 2467899999974321 1233456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTN---PNTVIILIGNKADLEA 134 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGG
T ss_pred ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccccc
Confidence 779999999999876433333333333444322 2359999999999853
No 42
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.69 E-value=5.1e-17 Score=152.89 Aligned_cols=117 Identities=20% Similarity=0.201 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~~ 373 (597)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+.. +. .....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~---------~~~~~~~~ 77 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER---------FRTITTAY 77 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC------------------CCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh---------hhhhHHHH
Confidence 579999999999999999999976533332222333333444555 44 5788999999832 21 12334
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS---ADVEKMILGNKCDVND 127 (183)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEEC--CCS
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECccCCc
Confidence 5679999999999876333333333333333211 2359999999999864
No 43
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.6e-16 Score=147.21 Aligned_cols=118 Identities=21% Similarity=0.229 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccccccc-ceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHH-HhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLF-ATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFH-ATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f-~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~-sTl 371 (597)
...+|+++|++|+|||||+|+|++.......... .+.+.....+.. ++. .+.+|||||+.. +. ...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~---------~~~~~~ 78 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER---------FRSVTH 78 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH---------HHHHHH
Confidence 4579999999999999999999987643222212 122222223334 443 678999999732 22 233
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+..+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ---HDVALMLLGNKVDSAH 130 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECCSTTS
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccCc
Confidence 446779999999999876333333333333333221 2359999999999865
No 44
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=152.82 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=76.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+... . ......+
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----~---~~~~~~~ 96 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-----N---SITSAYY 96 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----H---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-----H---HHHHHHh
Confidence 478999999999999999999987644333333334444455555 44 46789999997431 1 1233456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 97 ~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~---~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 97 RSAKGIILVYDITKKETFDDLPKWMKMIDKYAS---EDAELLLVGNKLDCET 145 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccccc
Confidence 679999999999886444444444455555432 2359999999999854
No 45
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.69 E-value=3.6e-16 Score=148.58 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-c-ccccccceecCceeEEEecCCceEEEeeccccccc-chhhHHHHHHHhH-
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-F-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD-LPLQLVDAFHATL- 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~-lp~~lve~f~sTl- 371 (597)
+.++|+|+|++|+|||||+|+|++... . ....++.|.... .... +..+.+|||||+... .+....+.+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN--FYII--NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEE--EEEE--TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEE--EEEE--CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 568999999999999999999998752 1 222233333222 1222 347999999997432 1111123333222
Q ss_pred HHHHhc---CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 372 EEVVEA---DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 372 ~~l~~a---DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+..+ |++++|+|++++..... ..+..++...+ .|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~------~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYYG------IPVIVIATKADKIPK 149 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHTT------CCEEEEEECGGGSCG
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHH-HHHHHHHHHcC------CCEEEEEECcccCCh
Confidence 223334 99999999988644433 33456666544 399999999998764
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.69 E-value=3.8e-16 Score=147.94 Aligned_cols=113 Identities=21% Similarity=0.136 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC-------------------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG------------------------------- 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g------------------------------- 344 (597)
...+|+|+|++|+|||||+|+|++........+..+.+.....+.+ ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999987643222111112222223333 22
Q ss_pred --------ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcE
Q 007583 345 --------RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNM 415 (597)
Q Consensus 345 --------~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~ 415 (597)
..+.+|||||+..... .+...+..+|++++|+|++++........+...+.. .+ .|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~------~pi 150 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS--------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN------YII 150 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT--------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC------CEE
T ss_pred cccCccceeEEEEEECCCcHHHHH--------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC------CcE
Confidence 5788999999743211 123446679999999999876433333333333332 22 499
Q ss_pred EEEEecCC
Q 007583 416 IEVWNKID 423 (597)
Q Consensus 416 IiVlNKiD 423 (597)
++|+||+|
T Consensus 151 ilv~NK~D 158 (208)
T 3clv_A 151 ILVANKID 158 (208)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 99999999
No 47
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=1.5e-16 Score=150.40 Aligned_cols=121 Identities=23% Similarity=0.295 Sum_probs=81.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..++|+++|++|||||||+|+|++........++.|.++....+.+ ++..+.+|||||+....+....+.+........
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 4579999999999999999999997655555566666666777776 678899999999865432221122222111123
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|+++. +....+...+...+ .|+++|+||+|+..
T Consensus 85 ~~~~~i~v~d~~~~---~~~~~~~~~~~~~~------~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 85 KPDLVVNIVDATAL---ERNLYLTLQLMEMG------ANLLLALNKMDLAK 126 (188)
T ss_dssp CCSEEEEEEEGGGH---HHHHHHHHHHHTTT------CCEEEEEECHHHHH
T ss_pred CCCEEEEEecchhH---HHHHHHHHHHHhcC------CCEEEEEEhhhccc
Confidence 58999999998752 22223333333322 49999999999753
No 48
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.69 E-value=3.4e-16 Score=147.89 Aligned_cols=116 Identities=22% Similarity=0.212 Sum_probs=78.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
...+|+++|.+|+|||||+|+|++.. . . ....|.......+.+ ++..+.+|||||+.. +.. ....+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~-~-~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~---------~~~~~~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-V-D-TISPTLGFNIKTLEH-RGFKLNIWDVGGQKS---------LRSYWRNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-C-S-SCCCCSSEEEEEEEE-TTEEEEEEEECCSHH---------HHTTGGGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-C-C-cccccCccceEEEEE-CCEEEEEEECCCCHh---------HHHHHHHHh
Confidence 34899999999999999999999876 2 1 122344444555665 678899999999832 222 23345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++....... .++..+ ........|+++|+||+|+.+.
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQ---RELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHH---HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred cCCCEEEEEEECcCHHHHHHHH---HHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 6799999999998864333322 222222 1111223599999999998653
No 49
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.69 E-value=2.7e-16 Score=145.26 Aligned_cols=119 Identities=19% Similarity=0.097 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..+|+++|++|+|||||+|+|++........+..........+.+.+ ...+.+|||||+.... ......+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~ 77 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR--------ALAPMYYR 77 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh--------cccHhhCc
Confidence 47999999999999999999998764322211111122222333322 2567899999984321 11234467
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+...+.. ..|+++|+||+|+.+
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETFSTLKNWVRELRQHGPP---SIVVAIAGNKCDLTD 125 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT---TSEEEEEEECTTCGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEECCcccc
Confidence 799999999998864444444454555554332 358999999999864
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=2e-16 Score=152.43 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=78.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
..++|+|+|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+.... ......
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~~~~ 89 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFR--------TITTAY 89 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGT--------CCCHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH--------HHHHHH
Confidence 4589999999999999999999987654443333344444455555 44 468899999984321 112345
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+
T Consensus 90 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl 137 (213)
T 3cph_A 90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDM 137 (213)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT---TCSEEEEEEECTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCC
Confidence 6779999999999876333333333333333321 13599999999998
No 51
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.69 E-value=2.8e-16 Score=147.11 Aligned_cols=120 Identities=22% Similarity=0.088 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..+|+++|++|+|||||+|+|++...........+.+.....+.+.+ ...+.+|||||+.... ......+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~ 83 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMYYR 83 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG--------GGTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh--------hhhHHHhc
Confidence 47899999999999999999998764433322222223333444422 3478899999974321 11233466
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++........+...+..... ...|+++|+||+|+.+.
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 84 GAAAAIIVFDVTNQASFERAKKWVQELQAQGN---PNMVMALAGNKSDLLDA 132 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCccccc
Confidence 79999999999876433333334344433322 23589999999998643
No 52
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.69 E-value=1.9e-16 Score=145.92 Aligned_cols=119 Identities=18% Similarity=0.058 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..+|+++|++|+|||||+|+|++...........+.+.....+.+.+ +..+.+|||||+.... . .....+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~------~~~~~~~ 77 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH--S------LAPMYYR 77 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--G------GHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh--h------hhHHhcc
Confidence 47899999999999999999998654322222222222223344322 3467899999984321 1 1233466
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQRQAS---PNIVIALSGNKADLAN 125 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCcc
Confidence 79999999999876333333333333333322 2358999999999854
No 53
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.69 E-value=1.4e-16 Score=147.07 Aligned_cols=116 Identities=19% Similarity=0.171 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+..... .....+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~--------~~~~~~ 73 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRT--------ITTAYY 73 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSC--------CCHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhh--------hHHHHh
Confidence 478999999999999999999987644333333333333444554 33 3678999999843211 123446
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
..+|++++|+|++++........+...+..... ...|+++|+||+|+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl 120 (170)
T 1g16_A 74 RGAMGIILVYDITDERTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDM 120 (170)
T ss_dssp TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccC
Confidence 679999999999876333333333333333321 23599999999998
No 54
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.68 E-value=3.1e-16 Score=145.18 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+++|.+|+|||||+|+|++..... ...|.......+.+ ++..+.+|||||+..... .....+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~--------~~~~~~~ 73 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIGFNVETVTY-KNLKFQVWDLGGLTSIRP--------YWRCYYS 73 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEEEE-TTEEEEEEEECCCGGGGG--------GGGGGCT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCccceEEEEE-CCEEEEEEECCCChhhhH--------HHHHHhc
Confidence 35899999999999999999998765321 12233444455555 578899999999843211 1123356
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++....... .+..++.. ......|+++|+||+|+.+.
T Consensus 74 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 74 NTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp TCSEEEEEEETTCCTTHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhc---hhhCCCEEEEEEECCCCcCC
Confidence 799999999998874333322 22222221 11133599999999998653
No 55
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.68 E-value=6.1e-16 Score=150.16 Aligned_cols=119 Identities=22% Similarity=0.204 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-----------CceEEEeecccccccchhhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-----------GRKVLLSDTVGFISDLPLQLV 364 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-----------g~~i~LiDTpG~i~~lp~~lv 364 (597)
...+|+|+|.+|+|||||+|+|++...........+.+.....+.+.+ ...+.+|||||+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------- 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------- 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH--------
Confidence 357999999999999999999998764322211112222333344422 3568899999972
Q ss_pred HHHH-HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcc-CCCcEEEEEecCCCCC
Q 007583 365 DAFH-ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEE-KLKNMIEVWNKIDYHD 426 (597)
Q Consensus 365 e~f~-sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~-~~~P~IiVlNKiDl~~ 426 (597)
.+. .....+..+|++++|+|++++ .....+..++..+..... ...|+++|+||+|+.+
T Consensus 96 -~~~~~~~~~~~~~d~iilV~D~~~~---~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 96 -RFRSLTTAFFRDAMGFLLMFDLTSQ---QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp -HHHHHHHHHHTTCCEEEEEEETTCH---HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred -hHHhHHHHHhcCCCEEEEEEECcCH---HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 232 244566789999999999875 334445566666543221 3469999999999854
No 56
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.68 E-value=4.4e-16 Score=148.15 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l 374 (597)
...+|+|+|.+|+|||||+|+|++...... ...|.......+.. .+..+.+|||||+. .+.. ....+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~---------~~~~~~~~~~ 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNED--MIPTVGFNMRKITK-GNVTIKLWDIGGQP---------RFRSMWERYC 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEE-TTEEEEEEEECCSH---------HHHTTHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCc--cCCCCceeEEEEEe-CCEEEEEEECCCCH---------hHHHHHHHHH
Confidence 347999999999999999999998664321 12233333444444 67789999999983 2222 23346
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++...... ..++..+ ........|+++|+||+|+...
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~---~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEAS---KNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHH---HHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHHHHH---HHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 789999999999876333322 2233222 1111133599999999998653
No 57
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.68 E-value=4.1e-16 Score=146.75 Aligned_cols=118 Identities=21% Similarity=0.149 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce--EEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK--VLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~--i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+|+|++.... ....+++.+.....+.+ ++.. +.+|||||+.... . .....+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--~------~~~~~~ 73 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS--A------MRDQYM 73 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC-CCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---C--T------THHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHH--H------HHHHHH
Confidence 478999999999999999999986632 22233333333333444 4544 5689999974321 1 112335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+..... ....|+++|+||+|+..
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD--SEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTSSS
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccCcc
Confidence 569999999999876443444444444443221 12359999999999863
No 58
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.68 E-value=2.8e-16 Score=148.02 Aligned_cols=119 Identities=21% Similarity=0.115 Sum_probs=79.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+... . ......
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----~---~~~~~~ 79 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----R---SVTRSY 79 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----H---HHHHTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----H---HHHHHH
Confidence 3589999999999999999999987654444444444444455555 44 47789999998431 1 112344
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 80 YRGAAGALLVYDITSRETYNALTNWLTDARMLAS---QNIVIILCGNKKDLDA 129 (186)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccccc
Confidence 6679999999999875333333333333333321 2359999999999853
No 59
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.68 E-value=2e-16 Score=150.58 Aligned_cols=122 Identities=15% Similarity=0.087 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..++|+|+|.+|+|||||+|+|++....... ...|.......+.. .+..+.+|||||+.... . .....+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~--~------~~~~~~~ 85 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKH-ITATVGYNVETFEK-GRVAFTVFDMGGAKKFR--G------LWETYYD 85 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----C-CCCCSSEEEEEEEE-TTEEEEEEEECCSGGGG--G------GGGGGCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccc-cccccceeEEEEEe-CCEEEEEEECCCCHhHH--H------HHHHHHh
Confidence 5689999999999999999999997744311 12233344444443 67789999999984321 1 1122356
Q ss_pred hcCEEEEEEeCCCCChHHHHHH-HHHHHHHcCC----CccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTT-VLQVLQQVGV----SEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~-v~~iL~~lgi----~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++........ +..++....+ ......|+|+|+||+|+...
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 7999999999998643333322 2222221110 00013599999999998654
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.68 E-value=3.7e-16 Score=147.27 Aligned_cols=121 Identities=19% Similarity=0.118 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc-eeEEEecC----------CceEEEeecccccccchhhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR-LKSVVLPS----------GRKVLLSDTVGFISDLPLQLV 364 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t-~~~i~l~~----------g~~i~LiDTpG~i~~lp~~lv 364 (597)
...+|+|+|++|+|||||+|+|++........+..+.+.. ...+...+ ...+.++||||+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 83 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------ 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH------
Confidence 3579999999999999999999986543222111111222 22333322 237889999998321
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 365 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 365 e~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.......+..+|++++|+|++++........+...+..... ....|+++|+||+|+..
T Consensus 84 --~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 84 --RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY--SENPDIVLCGNKSDLED 141 (195)
T ss_dssp --HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS--SSSCCEEEEEECTTCGG
T ss_pred --HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccc
Confidence 11234456789999999999876433333333333333221 12359999999999854
No 61
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.68 E-value=7.9e-17 Score=150.44 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|.+|+|||||+|+|++........+..+.+.....+.+.++ ..+.+|||||..... .+ ....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--~~------~~~~ 76 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG--KM------LDKY 76 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC--TT------HHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc--ch------hhHH
Confidence 4589999999999999999999986543222222223444555666442 578999999984321 11 1234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+....... ...| +++|+||+|+.+
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEES-ETQPLVALVGNKIDLEH 129 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHH-TCCCEEEEEEECGGGGG
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEEEcccccc
Confidence 667999999999987643333333333333321000 0125 899999999854
No 62
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=2.2e-16 Score=145.61 Aligned_cols=119 Identities=20% Similarity=0.129 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
.+|+++|++|+|||||+|+|++........+..+.+.....+.+.+ ...+.+|||||+.... . .....+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~------~~~~~~~~ 75 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA--S------LAPXYYRN 75 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--G------GHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh--h------hhhhhhcc
Confidence 6899999999999999999998764333323223333334444422 2367899999974321 1 12334567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+|++++|+|++++........+...+.... ....|+++|+||+|+...
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 76 AQAALVVYDVTKPQSFIKARHWVKELHEQA---SKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGS
T ss_pred CcEEEEEEecCChHHHHHHHHHHHHHHHhc---CCCCcEEEEEECCCcccc
Confidence 999999999987643333333333333322 123589999999998653
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=2.1e-16 Score=145.87 Aligned_cols=117 Identities=20% Similarity=0.128 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccccc-ccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDAR-LFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~-~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
..+|+++|.+|+|||||+|+|++........ .+.+. ...+.+ ++ ..+.+|||||+... .......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~i~D~~g~~~~--------~~~~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVV-DGEEASLMVYDIWEQDGG--------RWLPGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE---EEEEEE-TTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce---EEEEEE-CCEEEEEEEEECCCCccc--------hhhhhhh
Confidence 3689999999999999999999866432221 22221 122333 33 35679999998431 0112234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++........+...+.... .....|+++|+||+|+.+.
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR--QTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSS
T ss_pred hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEeccccccc
Confidence 567999999999987643333333433333321 1123599999999998653
No 64
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.68 E-value=5e-16 Score=142.62 Aligned_cols=117 Identities=21% Similarity=0.140 Sum_probs=72.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+|+|++..... ...+++.......+.+ ++ ..+.+|||||+... . ......+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~--~------~~~~~~~ 73 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE-DYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--A------AIRDNYF 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C--H------HHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC-CCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchh--H------HHHHHHh
Confidence 4789999999999999999999876322 2222222222333444 34 36789999997432 1 1123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+.. ... ...|+++|+||+|+.+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 74 RSGEGFLCVFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC---TTSCEEEEEECGGGGG
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECccccc
Confidence 679999999999876333333333222222 221 1359999999999854
No 65
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.68 E-value=5.4e-16 Score=142.79 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 378 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aD 378 (597)
+|+++|.+|+|||||+|+|++..... . ..|.......+.. .+..+.+|||||+... . ......+..+|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----~---~~~~~~~~~~d 69 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----R---PLWRHYFQNTQ 69 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-C--CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----H---HHHHHHTTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-c--cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----H---HHHHHHhccCC
Confidence 69999999999999999998765322 1 2244444445554 6788999999998431 1 11233467899
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCC
Q 007583 379 LLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 379 liL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~ 426 (597)
++++|+|++++..... +..++..+ ........|+++|+||+|+.+
T Consensus 70 ~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 70 GLIFVVDSNDRERVNE---AREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp EEEEEEETTCGGGHHH---HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCHHHHHH---HHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 9999999987643332 22333332 111222359999999999865
No 66
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.68 E-value=3.1e-16 Score=150.99 Aligned_cols=120 Identities=24% Similarity=0.189 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+..... .....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~--------~~~~~ 77 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT--------ITSSY 77 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC--------CCGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH--------HHHHh
Confidence 3579999999999999999999987654433333344444445555 44 3688999999743211 12234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+.+.
T Consensus 78 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT---STVLKLLVGNKCDLKDK 128 (206)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTT
T ss_pred ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccc
Confidence 5679999999999876443443444444443332 23589999999998653
No 67
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.67 E-value=4.6e-16 Score=143.25 Aligned_cols=117 Identities=19% Similarity=0.074 Sum_probs=72.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+|+|++....... ..++.......+.+ ++ ..+.+|||||+.... .+ ....+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~--~~------~~~~~ 72 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY-DPTIEDSYRKQVEV-DCQQCMLEILDTAGTEQFT--AM------RDLYM 72 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC-CCCSEEEEEEEEES-SSCEEEEEEEEECSSCSST--TH------HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCCccceEEEEEEE-CCEEEEEEEEECCChHHHH--HH------HHHHh
Confidence 368999999999999999999986532221 12111122222333 33 357899999985421 11 12335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+.. ... ...|+++|+||+|+.+
T Consensus 73 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 73 KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLED 122 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGG
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECccccc
Confidence 569999999999875333333333333322 221 2359999999999854
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.67 E-value=5.5e-16 Score=144.57 Aligned_cols=121 Identities=16% Similarity=0.080 Sum_probs=75.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+... .......
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~~~~~~ 76 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF--------RSLRTPF 76 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG--------HHHHGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhh--------hhhHHHH
Confidence 4589999999999999999999987643322222222333344444 44 37889999997331 1112234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcEEEEEecCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+..+|++++|+|++++........+...+.. .........|+++|+||+|+.
T Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 77 YRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 5679999999999876333333333333322 222122345999999999986
No 69
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.67 E-value=2.5e-16 Score=145.17 Aligned_cols=119 Identities=20% Similarity=0.082 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+.+ ...+.+|||||+.... ......+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFD--------AITKAYY 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTT--------CCCHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHH--------HHHHHHh
Confidence 357999999999999999999998764333222222333344444422 2468899999974321 1123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+.... ...|+++|+||+|+.+
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 76 RGAQACVLVFSTTDRESFEAISSWREKVVAEV----GDIPTALVQNKIDLLD 123 (168)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGG
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccCc
Confidence 67999999999987533232222322222221 1249999999999864
No 70
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.67 E-value=4.5e-17 Score=185.80 Aligned_cols=242 Identities=17% Similarity=0.138 Sum_probs=138.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcc------------cc------cccceecCceeEEEecCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS------------DA------RLFATLDPRLKSVVLPSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~------------~~------~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~ 357 (597)
...+|+|+|++|+|||||+++|++..... .+ ....|.......+.+ .+..+.+|||||+..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccc
Confidence 45899999999999999999999533110 00 123344444444544 577889999999943
Q ss_pred cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcccc-cccccc
Q 007583 358 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYID 436 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~~-~~~~i~ 436 (597)
. . ..+...+..+|.+++|+|++++ ...+...++..+...++ |+|+|+||+|+. .... ..+++.
T Consensus 87 f-----~---~~~~~~l~~ad~~ilVvD~~~g-~~~qt~~~~~~~~~~~i------p~ilv~NKiD~~-~~~~~~~~~l~ 150 (665)
T 2dy1_A 87 F-----V---GEIRGALEAADAALVAVSAEAG-VQVGTERAWTVAERLGL------PRMVVVTKLDKG-GDYYALLEDLR 150 (665)
T ss_dssp G-----H---HHHHHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHTTC------CEEEEEECGGGC-CCHHHHHHHHH
T ss_pred h-----H---HHHHHHHhhcCcEEEEEcCCcc-cchhHHHHHHHHHHccC------CEEEEecCCchh-hhHHHHHHHHH
Confidence 1 1 2345566779999999999876 44556666677776665 899999999997 4321 122222
Q ss_pred cccc---cccccccccCCCC---cccccccccCCCCCCCCCCCCCcccchhhhhhcccchhhhhhhhcCCCCCCchhhhh
Q 007583 437 GDDI---SNFSRAEDKDTTS---EPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFW 510 (597)
Q Consensus 437 ~~~~---~~~~sa~~~~gi~---eL~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~l~e~~l~e~~~~~~~~~~y~ 510 (597)
..+. ....+...+.++. +++....+.+ .+ +. ......+..+.+.....+..+++... +.++.+ .+.|+
T Consensus 151 ~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~-~~-g~-~~~~~~~~~~~~~~~~~r~~l~e~~~-~~d~~l--~e~~l 224 (665)
T 2dy1_A 151 STLGPILPIDLPLYEGGKWVGLIDVFHGKAYRY-EN-GE-EREAEVPPEERERVQRFRQEVLEAIV-ETDEGL--LEKYL 224 (665)
T ss_dssp HHHCSEEECEEEEEETTEEEEEEETTTTEEEEE-ET-TE-EEEECCCGGGHHHHHHHHHHHHHHHH-TTCHHH--HHHHH
T ss_pred HHhCCcceEEeeecCCCcccchhhhhhhheeec-CC-Cc-eeEecCCHHHHHHHHHHHHHHHHHHH-hCCHHH--HHHHH
Confidence 2111 0111111111111 2211111100 00 00 00001112233333333444444432 222222 25566
Q ss_pred cccCCCCCccchhhhhhhcccCCCCCCCcEEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 511 NAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~pvv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
++.++...+...........+.++| ++++||++|.||++||+.|.+.+..
T Consensus 225 ~~~~l~~~~~~~~~~~~~~~~~~~p----v~~~SA~~~~Gv~~Ll~~i~~~lp~ 274 (665)
T 2dy1_A 225 EGEEVTGEALEKAFHEAVRRGLLYP----VALASGEREIGVLPLLELILEALPS 274 (665)
T ss_dssp HTCCCCHHHHHHHHHHHHHTTSCEE----EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeeE----EEEeecccCcCHHHHHHHHHHhCCC
Confidence 6555544444445566666666666 9999999999999999999998754
No 71
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.67 E-value=6.4e-16 Score=148.24 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=76.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..+|+|+|.+|+|||||+|+|++...........+.+.....+...+ +..+.+|||||+... .......+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 79 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY--------RTITTAYYR 79 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHTTGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------cchHHHhhc
Confidence 57999999999999999999998764332222222222233344422 347789999998431 112334467
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYSW---DNAQVLLVGNKCDMED 127 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---SSCEEEEEEECTTCTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccCc
Confidence 79999999999876333333334344443321 2359999999999864
No 72
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=148.73 Aligned_cols=120 Identities=22% Similarity=0.175 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...+|+|+|++|+|||||+|+|++...........+.+.....+... .+..+.+|||||+.... . .....+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~------~~~~~~ 95 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR--A------ITSAYY 95 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC--T------THHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh--h------hhHHHh
Confidence 35799999999999999999999876443322222222233333332 23467899999984321 1 123346
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++... ..+..++..+........|+++|+||+|+..
T Consensus 96 ~~~d~vi~v~D~~~~~s~---~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQTY---AVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp TTCCEEEEEEETTCHHHH---HTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred ccCCEEEEEEECCCHHHH---HHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 679999999999875332 2233344433221123459999999999854
No 73
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=149.11 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+++|.+|+|||||+|+|++....... ...|.......+.+ ++..+.+|||||+..... .....+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 89 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRN--------LWEHYYK 89 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTGG--------GGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEE-CCEEEEEEECCCCHHHHH--------HHHHHHh
Confidence 3489999999999999999999987522222 23455555555665 678999999999743211 1123456
Q ss_pred hcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++...... ..+..++..... .....|+++|+||+|+.+
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCccc
Confidence 79999999999875322222 222233332221 002359999999999864
No 74
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.67 E-value=1.4e-15 Score=145.59 Aligned_cols=119 Identities=21% Similarity=0.177 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
..++|+|+|.+|+|||||+|+|++.... ....+++.......+.+ ++. .+.+|||||+... . ......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--~------~~~~~~ 82 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--A------AIRDNY 82 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--H------HHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhh--H------HHHHHH
Confidence 4689999999999999999999987632 22233333333344444 443 6789999998432 1 112234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+..... ....|+++|+||+|+.+
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMESFAATADFREQILRVKE--DENVPFLLVGNKSDLED 133 (206)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT--CSCCCEEEEEECTTCGG
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEeccCccc
Confidence 5679999999999876333333333333333211 12359999999999854
No 75
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=167.20 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 254 LQLQRRRILERRSHLLSQIEEVRRT------------RAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 254 ~e~~rr~i~~ri~~l~~~L~~~~~~------------r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
++.+||.|+++|..+++.+++..+. +..+|..|.+ .+.++|+|+|++|||||||+|+|++..
T Consensus 25 ~~~~r~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~------~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 25 IQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGK------PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp HTTCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTTTC------CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcccchhhcccc------cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4557999999999998877765321 1112222222 257999999999999999999999621
Q ss_pred ------Ccc--------------------------cccccceecCceeEEE-------------ecCCceEEEeeccccc
Q 007583 322 ------LFS--------------------------DARLFATLDPRLKSVV-------------LPSGRKVLLSDTVGFI 356 (597)
Q Consensus 322 ------v~~--------------------------~~~~f~Tld~t~~~i~-------------l~~g~~i~LiDTpG~i 356 (597)
+.+ .+..+.+..++.+.+- ...+.+++++||||+.
T Consensus 99 ~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~Gi~ 178 (349)
T 2www_A 99 TERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 178 (349)
T ss_dssp HHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCCC-
T ss_pred hhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHHHHHHHHhhccCCCCEEEEECCCcc
Confidence 110 1112222222111110 0256788999999985
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.. . .++ ...+|++++|+|++.+... ..+.. ++. ..|.++|+||+|+.+
T Consensus 179 ~~---~------~~l--~~~~d~vl~V~d~~~~~~~---~~i~~-----~il---~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 179 QS---E------FAV--ADMVDMFVLLLPPAGGDEL---QGIKR-----GII---EMADLVAVTKSDGDL 226 (349)
T ss_dssp -C---H------HHH--HTTCSEEEEEECCC--------------------C---CSCSEEEECCCSGGG
T ss_pred hh---h------hhH--HhhCCEEEEEEcCCcchhH---HHhHH-----HHH---hcCCEEEEeeecCCC
Confidence 32 1 111 4579999999998865211 11111 111 137899999999864
No 76
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.67 E-value=2.8e-16 Score=145.40 Aligned_cols=119 Identities=17% Similarity=0.085 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|.+|+|||||+|+|++........+..+.+.....+.+ ++. .+.+|||||+... .......
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~~~~ 75 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERF--------HALGPIY 75 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC---------------CCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhh--------hhhHHHH
Confidence 3479999999999999999999987643322222222222334444 343 5688999997321 0111223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+.... ....|+++|+||+|+.+
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 76 YRDSNGAILVYDITDEDSFQKVKNWVKELRKML---GNEICLCIVGNKIDLEK 125 (170)
T ss_dssp STTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---GGGSEEEEEEECGGGGG
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEECccccc
Confidence 567999999999987533333333333333221 12359999999999854
No 77
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.5e-16 Score=148.25 Aligned_cols=120 Identities=17% Similarity=0.102 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...+|+|+|.+|+|||||+|+|++...........+.+.....+... .+..+.+|||||.... .......+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~ 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY--------RTITTAYY 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC--------HHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH--------HHHHHHHH
Confidence 35799999999999999999999865332222222222233333332 3456899999997321 12234456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSW---DNAQVILVGNKCDMEE 142 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGG
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCcc
Confidence 789999999999876444444444444544332 2359999999999853
No 78
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.67 E-value=5.4e-16 Score=144.66 Aligned_cols=118 Identities=18% Similarity=0.090 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
..++|+++|.+|+|||||+|+|++.... .....++.......+.+ ++ ..+.+|||||+.... .+. ...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~--~~~------~~~ 77 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFG--AMR------EQY 77 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTS--CCH------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhH--HHH------HHH
Confidence 4589999999999999999999987532 22222222222233444 44 367899999974321 111 223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHH-HHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVL-QVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~-~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+. .++..... ...|+++|+||+|+.+
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 78 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLES 128 (181)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGG
T ss_pred HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc
Confidence 45699999999998753333332222 22233322 2359999999999854
No 79
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=1.5e-16 Score=173.76 Aligned_cols=122 Identities=21% Similarity=0.227 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH-HHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF-HATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f-~sTl~~ 373 (597)
+.++|+|+|.+|+|||||+|+|+|.... +.+.++.|.+.....+.+ .+..+.+|||||+... ...+.+.+ ..+...
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG-DEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTT-CSSCCEEECCCC-------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc-chHHHHHHHHHHHhh
Confidence 4589999999999999999999997643 455566676666655555 6789999999998532 12223334 345667
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|+..+.. .....+.++|...+ +|+|+|+||+|+..
T Consensus 100 ~~~ad~il~VvD~~~~~~-~~d~~l~~~l~~~~------~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT-AADEEVAKILYRTK------KPVVLAVNKLDNTE 145 (456)
T ss_dssp HHHCSEEEEEEESSSCSC-HHHHHHHHHHTTCC------SCEEEEEECC----
T ss_pred HhhCCEEEEEEeCCCCCC-hHHHHHHHHHHHcC------CCEEEEEECccchh
Confidence 788999999999987633 34445556665533 49999999999864
No 80
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.67 E-value=8.6e-16 Score=143.85 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|.+|+|||||+|+|++..... ...++.+.....+.+ ++ ..+.+|||||+.. ...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~ 69 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLV-DGQTHLVLIREEAGAPD-------------AKF 69 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEE-TTEEEEEEEEECSSSCC-------------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEE-CCEEEEEEEEECCCCch-------------hHH
Confidence 45789999999999999999999876432 111111222333444 44 3568899999854 123
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+.+++..+........|+++|+||+|+..
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (178)
T 2iwr_A 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 122 (178)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 45699999999999865444555544455554322223359999999999853
No 81
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.67 E-value=3.2e-16 Score=145.91 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=76.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||..... . .....+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~--~------~~~~~~ 84 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR--S------LIPSYI 84 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG--G------GSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH--H------HHHHHh
Confidence 378999999999999999999987644433333444444455555 44 367899999974321 1 122345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+.... ....|+++|+||+|+.+
T Consensus 85 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 85 RDSTVAVVVYDITNTNSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TTSSEEEEEEECGGGGG
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEECCcccc
Confidence 67999999999987533232222222222211 12358999999999854
No 82
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=5.3e-16 Score=143.24 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=73.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+|+|++....... ..|...+.......++ ..+.+|||||+.... ......+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY--IPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------AMQRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC--CCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccccEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHhc
Confidence 478999999999999999999986532211 1122222222222233 357899999984321 1122345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........++..+..... .....|+++|+||+|+.+
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGG
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEcccccc
Confidence 669999999999876433333444444444321 112359999999999854
No 83
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=2.1e-16 Score=148.40 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=74.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+++|++|||||||+|+|++.... ....|.......+.+ ++..+.+|||||+..... .....+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 84 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSY-KNLKLNVWDLGGQTSIRP--------YWRCYYA 84 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCEEEEEE-TTEEEEEEEEC----CCT--------TGGGTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcC---ccCCcCccceEEEEE-CCEEEEEEECCCCHhHHH--------HHHHHhc
Confidence 4589999999999999999999976531 122233344455555 678899999999853211 1123356
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++...... ..++..+- .......|+++|+||+|+.+
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 85 DTAAVIFVVDSTDKDRMSTA---SKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp TEEEEEEEEETTCTTTHHHH---HHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHH---HHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 79999999999876433332 23333332 11123469999999999865
No 84
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.66 E-value=4.5e-16 Score=148.29 Aligned_cols=119 Identities=24% Similarity=0.147 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|.+|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+..... .....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRS--------ITRSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSC--------CCHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhh--------hHHHH
Confidence 3478999999999999999999987654333333333444445555 44 4678999999843211 12344
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSS---SNMVIMLIGNKSDLES 140 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGG
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccCC
Confidence 6679999999999875333333333333333221 2359999999999854
No 85
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.66 E-value=6.4e-16 Score=148.89 Aligned_cols=118 Identities=21% Similarity=0.148 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-HhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-ATLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-sTl~ 372 (597)
...+|+|+|.+|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+.. +. ....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------~~~~~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER---------FRSVTRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHH---------HSCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh---------HHHHHHH
Confidence 3589999999999999999999987644333333333444445555 44 4788999999732 21 1344
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS---PNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC---TTCEEEEEEECGGGGG
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCccc
Confidence 56789999999999875333333333333333221 2359999999999853
No 86
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.66 E-value=8e-16 Score=141.11 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=73.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+|+|++....... ..++.+.....+.+ ++. .+.++||||+... . ......+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~--~------~~~~~~~ 72 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY-DPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF--A------SMRDLYI 72 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--H------HHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC-CCCcceeEEEEEEE-CCEEEEEEEEECCCchhh--H------HHHHHHh
Confidence 368999999999999999999976533221 12222222333444 443 4789999997432 1 1122345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+.. ++..... ...|+++|+||+|+.+
T Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 73 KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLES 122 (167)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGG
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECCcccc
Confidence 67999999999987633333333332 2332221 2359999999999853
No 87
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=150.01 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|.+|+|||||+|+|++...........+.+.....+.+ ++ ..+.+|||||+... .......
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERF--------RSIAKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTC--------HHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcch--------hhhHHHH
Confidence 3589999999999999999999987643222222222333344444 33 45789999998432 1123344
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH---ETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHH
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCCEEEEEECccccc
Confidence 6679999999999876443333444444444321 1249999999999854
No 88
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.66 E-value=4.6e-16 Score=171.23 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC-------CcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD-------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH 368 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~-------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~ 368 (597)
..++|+++|++|+|||||+|+|++.. ...+...+.|.+.....+.+ ++..+.++||||+.+ ...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~--------~~~ 88 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD--------LIR 88 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH--------HHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH--------HHH
Confidence 35799999999999999999999876 23344556677776666666 678999999999921 224
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 369 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 369 sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+...+..+|++++|+|++++.. .+......++..+++ |+|+|+||+|+.+
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~~i------p~IvviNK~Dl~~ 139 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPK-TQTGEHMLILDHFNI------PIIVVITKSDNAG 139 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSC-HHHHHHHHHHHHTTC------CBCEEEECTTSSC
T ss_pred HHHHHHhhCCEEEEEEecCCCcc-HHHHHHHHHHHHcCC------CEEEEEECCCccc
Confidence 55677788999999999988643 444444567777775 7899999999975
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.66 E-value=9.6e-16 Score=146.86 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+++|++|+|||||+|+|++..... ...|.......+.. .+..+.+|||||+.... ......+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~--------~~~~~~~~ 95 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEY-KNICFTVWDVGGQDKIR--------PLWRHYFQ 95 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE---EEEETTEEEEEEEE-TTEEEEEEECC-----C--------TTHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc---cCCcCceeEEEEEE-CCEEEEEEECCCCHhHH--------HHHHHHhc
Confidence 35899999999999999999998765321 12243433444555 67889999999984311 11223457
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++..... +..++..+ ........|+++|+||+|+.+
T Consensus 96 ~~d~iilv~D~~~~~s~~~---~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQE---SADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp TCCEEEEEEETTCGGGHHH---HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHH---HHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 8999999999987643332 22333332 111122359999999999864
No 90
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=6.3e-16 Score=147.59 Aligned_cols=119 Identities=21% Similarity=0.081 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..+|+|+|.+|+|||||+|+|++........+..........+... .+..+.+|||||..... ......+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~ 94 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH--------SLAPMYYR 94 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG--------GGTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH--------hhhHHhhc
Confidence 4799999999999999999999876322111111111122223332 23468899999974321 11234466
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGP---ENIVMAIAGNKCDLSD 142 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECccccc
Confidence 79999999999887444444444444444432 2359999999999853
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.66 E-value=1.2e-15 Score=144.67 Aligned_cols=117 Identities=23% Similarity=0.181 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+++|++|+|||||+++|++..... ...|.......+.+ ++..+.+|||||+... . ......+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~---~~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----~---~~~~~~~~ 82 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----R---PYWRSYFE 82 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEE---EEEETTEEEEEEEE-TTEEEEEEECSSCGGG-----H---HHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCc---ccCcCCeEEEEEEE-CCEEEEEEECCCCHHH-----H---HHHHHHhC
Confidence 45899999999999999999999875311 11222233335555 5788999999998431 1 11234567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++..... +..++..+ ........|+++|+||+|+.+.
T Consensus 83 ~~~~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 83 NTDILIYVIDSADRKRFEE---TGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp TCSEEEEEEETTCGGGHHH---HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCCEEEEEEECcCHHHHHH---HHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 8999999999987633322 22333332 1111234599999999998653
No 92
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=5.2e-16 Score=150.60 Aligned_cols=119 Identities=22% Similarity=0.175 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|.+|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||.... ...+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~--------~~~~~~~ 95 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERF--------RSITQSY 95 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG--------HHHHGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHH--------HHHHHHH
Confidence 3579999999999999999999987644333333333444445555 44 36789999998321 1112344
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 96 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 96 YRSANALILTYDITCEESFRCLPEWLREIEQYAS---NKVITVLVGNKIDLAE 145 (201)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCcc
Confidence 6679999999999876333333333343433321 2358999999999853
No 93
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.66 E-value=2e-15 Score=141.53 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+|+|++.... ....+++.......+.+ ++ ..+.+|||||+... . ......+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--~------~~~~~~~ 87 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--A------AIRDNYF 87 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--H------HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCccceEEEEEEEE-CCEEEEEEEEECCCCccc--H------HHHHHHh
Confidence 479999999999999999999987632 22223332333333444 44 36789999998432 1 1123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+.. ... ...|+++|+||+|+.+
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 88 RSGEGFLCVFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC---TTCCEEEEEECGGGGG
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc
Confidence 679999999999875333333333222222 221 1359999999999854
No 94
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.66 E-value=3.4e-16 Score=168.22 Aligned_cols=120 Identities=25% Similarity=0.265 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccc-cccccee--------------cCceeEEEe----cCCceEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATL--------------DPRLKSVVL----PSGRKVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-~~~f~Tl--------------d~t~~~i~l----~~g~~i~LiDTpG~i 356 (597)
...+|+++|++|+|||||+|+|++...... .....+. ++......+ .....+.++||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 568999999999999999999998542110 0001110 000000000 011578899999983
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
. ....+...+..+|++++|+|++++....+.......+..++. +|+|+|+||+|+.+.+
T Consensus 87 ~--------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-----~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 87 V--------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-----KNLIIVQNKVDVVSKE 145 (403)
T ss_dssp G--------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHH
T ss_pred H--------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-----CCEEEEEECccccchH
Confidence 2 124456677889999999999987545666666677777775 4899999999997643
No 95
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.66 E-value=4.1e-16 Score=150.31 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHh
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 376 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~ 376 (597)
..+|+++|++|||||||+|+|++..... ...|..++...+.+ ++..+.+|||||+..... .....+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 92 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELTI-AGMTFTTFDLGGHIQARR--------VWKNYLPA 92 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEE-TTEEEEEEEECC----CC--------GGGGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCCCceeEEEEE-CCEEEEEEECCCcHhhHH--------HHHHHHhc
Confidence 4789999999999999999999865321 22355556666776 668999999999843111 11234567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCC
Q 007583 377 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 377 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~ 426 (597)
+|++++|+|++++....... .++..+ ........|+++|+||+|+..
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~---~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESK---EELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHH---HHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCHHHHHHHH---HHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 99999999998764333322 233222 111223459999999999865
No 96
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=6.3e-16 Score=146.43 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..+|+|+|++|+|||||+|+|++........+..+.+.....+.+.+ ...+.+|||||+..... .....+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 86 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--------LTPSYYR 86 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------SHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHHHhc
Confidence 47999999999999999999998764333322223333344444422 24678999999843211 1233466
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC-ccCCCcEEEEEecCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~-~~~~~P~IiVlNKiDl~ 425 (597)
.+|++++|+|++++.. ...+..++..+... .....|+++|+||+|+.
T Consensus 87 ~~d~ii~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDT---FVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp TCCEEEEEEETTCHHH---HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred cCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 7999999999987532 23333444444321 12346999999999983
No 97
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.66 E-value=2.2e-16 Score=163.43 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=81.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHH-HhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~-sTl~~l 374 (597)
.++|+|+|++|||||||+|+|+|..+.. .+.+.+|.+...+.+.. ++..+.++||||+.......+...+. .+...+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4689999999999999999999987543 33444454443443443 67789999999995110111111221 133455
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|+++ .......+.+.+...+ .|+|+|+||+|+..
T Consensus 87 ~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~------~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 87 GDVELVIFVVEGTR--WTPDDEMVLNKLREGK------APVILAVNKVDNVQ 130 (301)
T ss_dssp CCEEEEEEEEETTC--CCHHHHHHHHHHHSSS------SCEEEEEESTTTCC
T ss_pred hcCCEEEEEEeCCC--CCHHHHHHHHHHHhcC------CCEEEEEECcccCc
Confidence 67999999999977 3334445555554333 49999999999875
No 98
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.65 E-value=6.1e-16 Score=148.39 Aligned_cols=122 Identities=22% Similarity=0.175 Sum_probs=77.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...+|+|+|++|+|||||+|+|++........+..+.+.....+.+.+ ...+.+|||||+..... .....+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS--------LGVAFY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC--------SCCGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------hHHHHH
Confidence 458999999999999999999998765433333333444444555422 24678999999743211 112235
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCccCCCcEEEEEecCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
..+|++++|+|++++........+.. ++...........|+++|+||+|+.
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 67999999999987633333333322 2222222112335999999999986
No 99
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=1e-15 Score=166.57 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=85.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-------------------------------ccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-------------------------------SDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-------------------------------~~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|++|+|||||+|+|++.... .+...+.|.+.....+.. ++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EK 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CC
Confidence 5689999999999999999999654211 111234566666666665 66
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChH------HHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE------EHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~------~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.++||||+.+ ....+...+..+|++++|+|++++..+ .+.......+..+++ +++|+|
T Consensus 95 ~~~~iiDTPGh~~--------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v-----~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKS--------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV-----KHLIVL 161 (439)
T ss_pred eEEEEEECCChHH--------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCC-----CeEEEE
Confidence 7899999999932 234556677889999999999986432 345555566667775 138999
Q ss_pred EecCCCCCc
Q 007583 419 WNKIDYHDE 427 (597)
Q Consensus 419 lNKiDl~~~ 427 (597)
+||+|+...
T Consensus 162 iNK~Dl~~~ 170 (439)
T 3j2k_7 162 INKMDDPTV 170 (439)
T ss_pred eecCCCccc
Confidence 999998653
No 100
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=147.02 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+|+|.+|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+... .......+
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~~~~~ 99 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF--------RTITQSYY 99 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGG--------HHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH--------HHHHHHHH
Confidence 579999999999999999999987643222111122333444555 44 47889999998431 11233456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+.... ....|+++|+||+|+..
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYA---GSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGG
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCEEEEEECCcccc
Confidence 78999999999987533333333333333322 12359999999999854
No 101
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.65 E-value=1.9e-15 Score=142.08 Aligned_cols=118 Identities=22% Similarity=0.130 Sum_probs=73.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce--EEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK--VLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~--i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|.+|+|||||+|+|++....... ..++.......+.. ++.. +.+|||||..... .+ ....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--~~------~~~~ 86 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDY-DPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFS--AM------REQY 86 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGC--SS------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceeEEEEEe-CCcEEEEEEEECCCchhhH--HH------HHHH
Confidence 4579999999999999999999976532222 22222222333344 4544 4569999974321 11 1233
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+.. ... ...|+++|+||+|+.+
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR---ESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS---SCCCEEEEEECTTCST
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCCchh
Confidence 5669999999999876333333333333322 221 2359999999999865
No 102
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.65 E-value=4.2e-16 Score=148.02 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...+|+|+|.+|+|||||+|+|++...........+.+.....+...+ +..+.+|||||+..... .....+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 92 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT--------ITTAYY 92 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC--------SGGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh--------hHHHhc
Confidence 357999999999999999999998764332222222222233344322 34678999999743211 122335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSW---DNAQVILVGNKCDLED 141 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGG
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECccccc
Confidence 679999999999876433333334444444321 2359999999999854
No 103
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.6e-15 Score=144.40 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|.+|+|||||+|+|++....... ..|...........++ ..+.+|||||+.... ......
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--IPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP--------AMQRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--SCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------HHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--cCccccceeEEEEECCEEEEEEEEeCCChHHhH--------HHHHHh
Confidence 4589999999999999999999986532211 1222222222222233 367899999984321 112234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........++..+..+.-. ....|+++|+||+|+..
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS-VEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC-GGGSCEEEEEECTTCSS
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCCc
Confidence 56799999999998764333334444444443211 12359999999999864
No 104
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.65 E-value=1.9e-15 Score=143.50 Aligned_cols=119 Identities=22% Similarity=0.183 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHH-H-hH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFH-A-TL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~-s-Tl 371 (597)
...+|+|+|.+|+|||||+|+|++...........+.+.....+.+ ++ ..+.+|||||.. .+. . ..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~---------~~~~~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQE---------RFRKSMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSH---------HHHTTTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCch---------hhhhhhhH
Confidence 4589999999999999999999986644333333333444445555 33 478899999973 232 1 23
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+..+|++++|+|++++........+...+..... ....|+++|+||+|+.+
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL--ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC--CSCCCEEEEEECTTCGG
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccc
Confidence 446789999999999875333333333232322211 12359999999999854
No 105
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.65 E-value=6e-16 Score=146.13 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+++|.+|+|||||+|+|++... .....|.......+.+ ++..+.+|||||+..... .....+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 87 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLRS--------SWNTYYT 87 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSCEEEEE-TTEEEEEEEESSSGGGTC--------GGGGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceeeEEEEE-CCEEEEEEECCCCHhHHH--------HHHHHhc
Confidence 358999999999999999999998764 1222333444555666 678899999999843211 1123356
Q ss_pred hcCEEEEEEeCCCCChHHHHHH-HHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTT-VLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~-v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........ +..++.. ......|+++|+||+|+..
T Consensus 88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 88 NTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhC---hhhCCCeEEEEEECCCccc
Confidence 7999999999988643333322 2222221 1122359999999999865
No 106
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.65 E-value=1.1e-15 Score=164.66 Aligned_cols=119 Identities=25% Similarity=0.295 Sum_probs=82.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEEEecC----------------C------ceEEEe
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLPS----------------G------RKVLLS 350 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i~l~~----------------g------~~i~Li 350 (597)
...+|+++|+.|+|||||+++|+|... ..+...+.|++.......+.. + ..+.++
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 468999999999999999999997642 222234445554433322210 1 568999
Q ss_pred ecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 351 DTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 351 DTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
||||+.. ....+...+..+|++++|+|++++....+....+..+..++. +|+|+|+||+|+.+.
T Consensus 89 DtPGh~~--------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~-----~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 89 DAPGHEA--------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQ-----KNIIIAQNKIELVDK 152 (410)
T ss_dssp ECSSHHH--------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCH
T ss_pred ECCChHH--------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCC-----CcEEEEEECccCCCH
Confidence 9999821 124456667789999999999986423444444456666665 379999999999764
No 107
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=1.4e-15 Score=163.68 Aligned_cols=119 Identities=24% Similarity=0.305 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC---cccccccceecCceeEEEe---------------cC-C------ceEEEe
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVL---------------PS-G------RKVLLS 350 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v---~~~~~~f~Tld~t~~~i~l---------------~~-g------~~i~Li 350 (597)
...+|+++|+.|+|||||+++|+|... ..+...+.|.+.......+ ++ + ..+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 568999999999999999999997642 1222234455443322221 10 1 568999
Q ss_pred ecccccccchhhHHHHH-HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 351 DTVGFISDLPLQLVDAF-HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 351 DTpG~i~~lp~~lve~f-~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
||||+. .| ..+...+..+|++++|+|++++....+.......+..++. +|+|+|+||+|+.+.+
T Consensus 87 DtPGh~---------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~-----~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 87 DSPGHE---------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGI-----DKIIIVQNKIDLVDEK 151 (408)
T ss_dssp ECSSHH---------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTC-----CCEEEEEECTTSSCTT
T ss_pred ECCCHH---------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCC-----CeEEEEEEccCCCCHH
Confidence 999982 23 3345556678999999999986423444444455666665 3799999999997643
No 108
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.65 E-value=3e-15 Score=136.88 Aligned_cols=117 Identities=21% Similarity=0.141 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+++|++|+|||||+|+|++...... ...++.......+.. ++ ..+.++||||+.... .+ ....+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~--~~------~~~~~~ 73 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-CDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS--AM------RDQYMR 73 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC--HH------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccc-cCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh--HH------HHHhhc
Confidence 6899999999999999999998653222 112222222233333 33 346899999985321 11 122355
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++........+...+....- ....|+++|+||+|+.+
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~--~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKD--SDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEEchhhhh
Confidence 69999999999875333333333333333211 11259999999999865
No 109
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.64 E-value=3.4e-16 Score=152.05 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeE--EEecCC--ceEEEeecccccccchhhHHHHHHHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKS--VVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~--i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl 371 (597)
...+|+|+|.+|||||||+|+|++....... ..|....... ....++ ..+.+|||||+..... ...
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~ 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNY--NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV--------LKD 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEE--ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC--------CCH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch--------HHH
Confidence 3589999999999999999999976532111 1111111111 222222 4688999999853211 112
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+..+|++++|+|++++........+...+..... ...|+++|+||+|+...
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 80 VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG---NEAPIVVCANKIDIKNR 132 (218)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SSSCEEEEEECTTCC--
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccc
Confidence 335679999999999876443443334344433321 22499999999998643
No 110
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.64 E-value=2.6e-16 Score=147.75 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=74.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+++|++..... ....++.+.....+.+ ++. .+.+|||||+.... ......+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~~~~~~ 74 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD--------RLRPLSY 74 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS-SCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT--------TTGGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH--------HHHHHhc
Confidence 4789999999999999999999765322 2222222222223333 443 45699999984321 0112235
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++....... .+...+....- ..|+++|+||+|+.+.
T Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 75 PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDD 124 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTC
T ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC----CCCEEEEeEccccccc
Confidence 6799999999998764333332 34444444311 3599999999998754
No 111
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.64 E-value=1.6e-16 Score=171.93 Aligned_cols=122 Identities=25% Similarity=0.224 Sum_probs=85.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..++|+|+|++|+|||||+|+|++... ......++|.++....+.+.+...+.+|||||+....... ...+..+...+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~-~~~~~~~~~~l 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG-RLRVEKARRVF 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC-CCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh-HHHHHHHHHHH
Confidence 458999999999999999999999875 3566778888888888888555589999999996532110 01234456677
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++ .......+...+.+.++ |+|+|+||+|+...
T Consensus 112 ~~aD~vllVvD~~---~~~~~~~~l~~l~~~~~------piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 112 YRADCGILVTDSA---PTPYEDDVVNLFKEMEI------PFVVVVNKIDVLGE 155 (423)
T ss_dssp TSCSEEEEECSSS---CCHHHHHHHHHHHHTTC------CEEEECCCCTTTTC
T ss_pred hcCCEEEEEEeCC---ChHHHHHHHHHHHhcCC------CEEEEEeCcCCCCc
Confidence 8899999999983 23555667777777754 99999999998754
No 112
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.64 E-value=2.8e-15 Score=142.03 Aligned_cols=118 Identities=19% Similarity=0.103 Sum_probs=71.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+|+|++..... ....++.......+.+ ++ ..+.+|||||.... .......+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 90 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY--------SAMRDQYM 90 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC-------------------C
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc-ccCCccceEEEEEEEE-CCEEEEEEEEECCChHHH--------HHHHHHhh
Confidence 4799999999999999999999865322 2222222222233444 44 34789999997321 11223346
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+..... ....|+++|+||+|+..
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADINLYREQIKRVKD--SDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSC
T ss_pred CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECCcCCc
Confidence 679999999999876433333333333433211 11259999999999865
No 113
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.64 E-value=7.5e-16 Score=154.74 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=83.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccccccc--ceecCceeEEEecCCceEEEeecccccccchh--hHHHH-HHHh
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLF--ATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDA-FHAT 370 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f--~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~-f~sT 370 (597)
...+|+|+|++|||||||+|+|++.........+ .|.......+.+ ++..+.++||||+...... ..... ....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999998754443322 344444445555 7889999999999753211 11111 2233
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEe-cCCCCC
Q 007583 371 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWN-KIDYHD 426 (597)
Q Consensus 371 l~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlN-KiDl~~ 426 (597)
...+..+|++++|+|++. .......++..+..+ +. ....|.|+|+| |+|+..
T Consensus 100 ~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTT
T ss_pred HhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCC
Confidence 445678999999999985 334444555556554 21 11237788887 999874
No 114
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.6e-16 Score=150.87 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=75.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|++|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||+..... .....
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~ 82 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA--------ITSAY 82 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC--------CCGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhh--------hHHHH
Confidence 3579999999999999999999987654443333344444455555 44 4778999999743211 12233
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+..... ...|+++|+||+|+..
T Consensus 83 ~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENAD---DNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC-----CEEEEEECCGGGGG
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccc
Confidence 5679999999999876443333333333433321 2359999999999854
No 115
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.63 E-value=1.5e-16 Score=179.01 Aligned_cols=117 Identities=21% Similarity=0.180 Sum_probs=75.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec-----------------CCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-----------------SGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~-----------------~g~~i~LiDTpG~i~~ 358 (597)
+.|+|+|+|++|+|||||+++|++..+........|.........+. ....+.+|||||+...
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45899999999999999999999864322211112211111111110 1125899999999542
Q ss_pred chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 359 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
... ....+..+|++++|+|++++. ..+....+..+...++ |+|+|+||+|+...
T Consensus 84 ~~~--------~~r~~~~aD~aILVvDa~~Gv-~~qT~e~l~~l~~~~v------PiIVViNKiDl~~~ 137 (594)
T 1g7s_A 84 TTL--------RKRGGALADLAILIVDINEGF-KPQTQEALNILRMYRT------PFVVAANKIDRIHG 137 (594)
T ss_dssp TTS--------BCSSSBSCSEEEEEEETTTCC-CHHHHHHHHHHHHTTC------CEEEEEECGGGSTT
T ss_pred HHH--------HHHHHhhCCEEEEEEECCCCc-cHhHHHHHHHHHHcCC------eEEEEecccccccc
Confidence 111 112345699999999999873 4455555566776664 99999999999754
No 116
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.63 E-value=4e-15 Score=144.07 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=74.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC--CceEEEeecccccccchhhHHHHHHH--hHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS--GRKVLLSDTVGFISDLPLQLVDAFHA--TLE 372 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~--g~~i~LiDTpG~i~~lp~~lve~f~s--Tl~ 372 (597)
.++|+++|++|+|||||+++|++.... .... |+......+.+.+ +..+.+|||||+. .+.. ...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~~ 74 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYR-DTQT--SITDSSAIYKVNNNRGNSLTLIDLPGHE---------SLRFQLLDR 74 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCC-CBCC--CCSCEEEEEECSSTTCCEEEEEECCCCH---------HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-cccC--CcceeeEEEEecCCCccEEEEEECCCCh---------hHHHHHHHH
Confidence 479999999999999999999986632 2222 2223333455533 5678999999993 2222 223
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHH----HHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTT----VLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~----v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.+..+|++++|+|+++. ...... +...+...... ....|+++|+||+|+....
T Consensus 75 ~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAF--QREVKDVAEFLYQVLIDSMAL-KNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HGGGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHTS-TTCCEEEEEEECTTSTTCC
T ss_pred HHhhCCEEEEEEECCCc--CHHHHHHHHHHHHHHhhhhhc-ccCCCEEEEEECCCCCCcc
Confidence 46789999999999862 222222 33333221111 1124999999999998654
No 117
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.63 E-value=1.1e-15 Score=146.14 Aligned_cols=114 Identities=24% Similarity=0.276 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
.+|+++|++|+|||||+|+|++.... ....|..+....+.+ ++..+.++||||+..... .....+..+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~ 91 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAI-GNIKFTTFDLGGHIQARR--------LWKDYFPEV 91 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEEEE-TTEEEEEEECCCSGGGTT--------SGGGGCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC---ccccCCCCCeEEEEE-CCEEEEEEECCCCHHHHH--------HHHHHHhcC
Confidence 68999999999999999999986642 123455566666776 678899999999853211 111234579
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~ 426 (597)
|++++|+|++++....... .++..+ ........|+++|+||+|+..
T Consensus 92 d~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 92 NGIVFLVDAADPERFDEAR---VELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp CEEEEEEETTCGGGHHHHH---HHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CEEEEEEECCChHHHHHHH---HHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 9999999999864333332 222222 111223459999999999865
No 118
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.63 E-value=1.9e-15 Score=143.27 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+++|++|+|||||+|+|++..... ...|.......+.+ ++..+.+|||||+...... ....+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~--------~~~~~~ 88 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT---TVPTVGVNLETLQY-KNISFEVWDLGGQTGVRPY--------WRCYFS 88 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE---ECSSTTCCEEEEEE-TTEEEEEEEECCSSSSCCC--------CSSSST
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC---cCCCCceEEEEEEE-CCEEEEEEECCCCHhHHHH--------HHHHhh
Confidence 35899999999999999999998765321 12243444555665 6788999999998432111 112345
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++....... .+..++.. ......|+++|+||+|+.+.
T Consensus 89 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 89 DTDAVIYVVDSTDRDRMGVAKHELYALLDE---DELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp TCCEEEEEEETTCCTTHHHHHHHHHHHHTC---STTTTCEEEEEEECTTSTTC
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHhh---hhcCCCeEEEEEECCCCcCC
Confidence 799999999999874333322 22222222 11223599999999998653
No 119
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=150.16 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe-cCCceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL-PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l-~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...+|+|+|.+|+|||||+|+|++....... ..++.......+.+ ..+..+.+|||||+..... .....+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGY-DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI--------LPYSFI 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-CCCSEEEEEEEEC----CEEEEEEEECCCCTTCC--------CCGGGT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCC-CCccceEEEEEEEECCEEEEEEEEECCCccchHH--------HHHHHH
Confidence 4589999999999999999999987643222 11111111222222 1235678999999743211 122335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++..... +..++..+. .......|+++|+||+|+..
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQV---IESLYQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHH---HHHHHHHHHC-----CCCEEEEEECTTCGG
T ss_pred hcCCEEEEEEeCCCHHHHHH---HHHHHHHHHHhcCCCCCCEEEEEECccCcc
Confidence 67999999999987533333 333443331 11122359999999999864
No 120
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.63 E-value=2.7e-15 Score=144.42 Aligned_cols=121 Identities=19% Similarity=0.080 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|.+|+|||||+|+|++........+..+.+.....+.+ ++. .+.+|||+|..... ..+ ....
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-~~~------~~~~ 93 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG-GWL------RDHC 93 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG-HHH------HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccch-hhh------HHHh
Confidence 4589999999999999999999875433233333344444445555 444 56789999984321 111 1123
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+..... ....|+|+|+||+|+..
T Consensus 94 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP--HHDLPVILVGNKSDLAR 144 (195)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST--TSCCCEEEEEECTTCTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEeechhccc
Confidence 5679999999999875333333333222222111 12359999999999864
No 121
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.63 E-value=2.4e-17 Score=183.10 Aligned_cols=117 Identities=21% Similarity=0.220 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
+.|+|+++|++|+|||||+++|++........++.|.+.....+.++++..+.+|||||+.... ..+...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~--------~~~~~~~~ 74 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS--------AMRARGTQ 74 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT--------TSBBSSSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH--------HHHHHHHc
Confidence 3589999999999999999999987655555667777776666666677889999999984321 11223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++... +....+..+...++ |+|+|+||+|+.+.
T Consensus 75 ~aD~vILVVDa~dg~~~-qt~e~l~~~~~~~v------PiIVViNKiDl~~~ 119 (537)
T 3izy_P 75 VTDIVILVVAADDGVMK-QTVESIQHAKDAHV------PIVLAINKCDKAEA 119 (537)
T ss_dssp SBSSCEEECBSSSCCCH-HHHHHHHHHHTTTC------CEEECCBSGGGTTT
T ss_pred cCCEEEEEEECCCCccH-HHHHHHHHHHHcCC------cEEEEEeccccccc
Confidence 69999999999987544 44444555655554 89999999998754
No 122
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.63 E-value=6.9e-16 Score=147.66 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=53.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccce-ecCceeEEEecC---CceEEEeecccccccchhhHHHHHHH-h
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFAT-LDPRLKSVVLPS---GRKVLLSDTVGFISDLPLQLVDAFHA-T 370 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~T-ld~t~~~i~l~~---g~~i~LiDTpG~i~~lp~~lve~f~s-T 370 (597)
..+|+|+|.+|+|||||+|+|++.... ......++ .+.....+.+.+ ...+.+|||||+. .+.. .
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~ 90 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---------LYKEQI 90 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH---------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH---------HHHHHH
Confidence 369999999999999999999987321 12222222 244555666633 3478999999983 2322 2
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 371 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 371 l~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
...+..+|++++|+|++++........+...+....-......|+++|+||+|+..
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp STTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 33456799999999998764333333333333332210012359999999999865
No 123
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.9e-15 Score=143.24 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+|+|++....... ..++.......+.+ ++ ..+.+|||||+.. .. .....+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~---~~------~~~~~~ 96 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DPTLESTYRHQATI-DDEVVSMEILDTAGQED---TI------QREGHM 96 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEEEEEEEE-TTEEEEEEEEECCCCCC---CH------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-CCCCCceEEEEEEE-CCEEEEEEEEECCCCCc---cc------chhhhh
Confidence 479999999999999999999987643221 11111111222333 33 4578999999864 11 123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++........+...+..... ....|+++|+||+|+..
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGG
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC--CCCCcEEEEEECccccc
Confidence 679999999999876433333333344433211 12359999999999854
No 124
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=146.58 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=72.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|.+|+|||||+|+|++... .....+++.+.....+.. ++. .+.+|||||+...... ....
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 88 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKL--------RPLC 88 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSS--------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHH--------hHhh
Confidence 358999999999999999999998762 222223332222233444 454 5569999998532111 1123
Q ss_pred HHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++....... .+...+.... ...|+++|+||+|+...
T Consensus 89 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 89 YTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC----PKAPIILVGTQSDLRED 139 (201)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSSCEEEEEECGGGGGC
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhc
Confidence 56799999999998764333332 3334444331 13599999999998654
No 125
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.62 E-value=1.2e-15 Score=153.35 Aligned_cols=127 Identities=17% Similarity=0.051 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccccccc--ceecCceeEEEecCCceEEEeecccccccchhh----HHHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLF--ATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQ----LVDAFHA 369 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f--~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~----lve~f~s 369 (597)
...+|+|+|.+|||||||+|+|++.........+ +|..+......+ ++..+.++||||+....... .......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999998866554433 555665666665 78899999999996432111 1111122
Q ss_pred hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCccCCCcEEEEEecCCCCC
Q 007583 370 TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 370 Tl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.......+|++++|+|++.. . .....+.+.+.+ ++. .....|+|+|.||+|+.+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~-~-~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRF-T-AQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBC-C-HHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTT
T ss_pred HHhcCCCCCEEEEEEeCCCC-C-HHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCC
Confidence 23334789999999999853 3 333344455544 332 112358999999999854
No 126
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.62 E-value=1.5e-15 Score=144.70 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+|+|++..... ....++.......+.. ++. .+.+|||||..... ......+
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~~~~~~ 92 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPT-AYVPTVFENFSHVMKY-KNEEFILHLWDTAGQEEYD--------RLRPLSY 92 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGT--------TTGGGGC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCC-ccCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHHHH--------HHhHhhc
Confidence 4799999999999999999999876322 2222222222223333 444 45899999974321 1122345
Q ss_pred HhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++...... ..+...+.... ...|+++|+||+|+...
T Consensus 93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI----DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTSEEEEEEECGGGCCT
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccC
Confidence 679999999999886433332 33444444432 12599999999998754
No 127
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.62 E-value=1.3e-15 Score=143.07 Aligned_cols=118 Identities=21% Similarity=0.184 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
..++|+++|.+|+|||||+|+|++... .....+++.......+.. ++ ..+.+|||||+..... .....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~--------~~~~~ 74 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI--------FPQTY 74 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC--------CCGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhH--------HHHHH
Confidence 358999999999999999999996552 222222222222333333 55 3568999999853211 01123
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHH-HHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVL-QQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL-~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+ ..... ...|+++|+||+|+..
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 75 SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK---VQIPIMLVGNKKDLHM 125 (181)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTT
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchh
Confidence 45699999999998754333333333222 32221 2359999999999854
No 128
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.62 E-value=1.7e-15 Score=145.86 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=76.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+|+|++...... ...++.......+.+ ++ ..+.+|||||+.... ......+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~~~~~ 94 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEV-DGKQVELALWDTAGQEDYD--------RLRPLSY 94 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEE-TTEEEEEEEECCCCSGGGT--------TTGGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEE-CCEEEEEEEEECCCchhHH--------HHHHHhc
Confidence 36899999999999999999998764322 222222222334444 44 367899999984321 0112235
Q ss_pred HhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 375 VEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+|++++|+|++++...... ..+...+.... ...|+++|+||+|+....
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 95 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRQDE 145 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGTTCH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEecHHhhcCc
Confidence 679999999999875333333 34445555432 124999999999997643
No 129
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.62 E-value=6.4e-15 Score=140.28 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|.+|+|||||+|+|++........ .|.......+.+ ++. .+.+|||+|... +. .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~---------~~----~ 82 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEES--PEGGRFKKEIVV-DGQSYLLLIRDEGGPPE---------LQ----F 82 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC--TTCEEEEEEEEE-TTEEEEEEEEECSSSCC---------HH----H
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CCcceEEEEEEE-CCEEEEEEEEECCCChh---------hh----e
Confidence 45899999999999999999999865332221 122222234444 553 456799999843 21 4
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC-ccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~-~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++..... +..++..+... .....|+++|+||+|+..
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 83 AAWVDAVVFVFSLEDEISFQT---VYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp HHHCSEEEEEEETTCHHHHHH---HHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred ecCCCEEEEEEECcCHHHHHH---HHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 566999999999987633333 33344443221 113359999999999854
No 130
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.62 E-value=8.4e-16 Score=148.68 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=76.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE--EEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV--LLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i--~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+++|++.... .....++.+.....+.+ ++..+ .+|||||+.... ......+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~~~~~ 99 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD--------RLRPLSY 99 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT--------TTGGGGC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEE-CCEEEEEEEEECCCchhhH--------HHHHHHh
Confidence 489999999999999999999976532 22222332333333333 55544 599999984321 1122245
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+|++++|+|++++....... .+...+.... ...|+++|+||+|+....
T Consensus 100 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSCCEEEEEECHHHHTCH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhccch
Confidence 6799999999999764433332 4455555542 124999999999987653
No 131
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.61 E-value=5.4e-15 Score=139.84 Aligned_cols=122 Identities=16% Similarity=0.031 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccc----eecCceeEEEe------cC--CceEEEeecccccccchhhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFA----TLDPRLKSVVL------PS--GRKVLLSDTVGFISDLPLQL 363 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~----Tld~t~~~i~l------~~--g~~i~LiDTpG~i~~lp~~l 363 (597)
...+|+|+|.+|+|||||++.|.+........... ...++.+.-.. .+ ...+.+|||||+....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 35799999999999999999999865322111000 01122211110 12 2357899999984321
Q ss_pred HHHHHHhHHHHHhcCEEEEEEeCCCCChH---HHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 364 VDAFHATLEEVVEADLLVHVLDCTAPNLE---EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 364 ve~f~sTl~~l~~aDliL~VvDas~~~~~---~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
......+..+|++++|+|++++... .....+..++..+.. .....|+++|+||+|+.+
T Consensus 89 ----~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 89 ----ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp ----HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT
T ss_pred ----HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc
Confidence 1122346779999999999865332 233455566766632 223469999999999854
No 132
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.61 E-value=2.1e-15 Score=155.35 Aligned_cols=126 Identities=19% Similarity=0.324 Sum_probs=76.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecC---ce-e----------------------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDP---RL-K---------------------------------- 337 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~---t~-~---------------------------------- 337 (597)
..|.|+|+|.+|||||||+|+|+|..+.......+|..| .. +
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 579999999999999999999999875222211112111 00 0
Q ss_pred ---------------------EEEecCCceEEEeeccccccc----chhhHHHHH-HHhHHHHHhcCEEEEEEeCCCCCh
Q 007583 338 ---------------------SVVLPSGRKVLLSDTVGFISD----LPLQLVDAF-HATLEEVVEADLLVHVLDCTAPNL 391 (597)
Q Consensus 338 ---------------------~i~l~~g~~i~LiDTpG~i~~----lp~~lve~f-~sTl~~l~~aDliL~VvDas~~~~ 391 (597)
.+..+++..+.++||||+... .+..+...+ ..+...+..+|++++|+|++....
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 123345578999999999641 122333334 345667788999999999743222
Q ss_pred H-HHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 392 E-EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 392 ~-~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
. .....+...+...+ .|+|+|+||+|+...
T Consensus 183 ~~~~~~~i~~~~~~~~------~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 183 ANSDALQLAKEVDPEG------KRTIGVITKLDLMDK 213 (315)
T ss_dssp TTCSHHHHHHHHCSSC------SSEEEEEECTTSSCS
T ss_pred hhhHHHHHHHHhCCCC------CcEEEEEcCcccCCc
Confidence 2 22223334443322 499999999998754
No 133
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=145.83 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=66.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHH-hHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHA-TLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~s-Tl~~ 373 (597)
..+|+++|.+|+|||||+|+|++..... ...+++.+.....+.+ ++. .+.+|||||+.. +.. ....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------~~~~~~~~ 102 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPE-SYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDD---------YDRLRPLF 102 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEE-TTEEEEEEEEEC----------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEE-CCEEEEEEEEECCCchh---------hhHHHHHH
Confidence 4799999999999999999999865322 2222222222333444 343 678999999832 211 2234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+..+|++++|+|++++....... .+...+.... ...|+|+|+||+|+....
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC----KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp --CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSCCEEEEEECGGGGSCH
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhhccc
Confidence 56799999999998763333332 3334444332 135999999999987643
No 134
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=2.8e-15 Score=142.75 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=76.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|++|+|||||+++|++.... ....+++.+.....+.+ ++ ..+.+|||||+..... .....+
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 87 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR--------LRPLSY 87 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT--------TGGGGC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH--------HHHHhc
Confidence 479999999999999999999987532 22222222333334444 44 4678999999853211 112235
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+|++++|+|++++....... .+...+.... ...|+++|+||+|+.+..
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYA----PNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECTTSTTCH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhcccc
Confidence 6799999999998764333332 3444444431 135999999999997643
No 135
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.61 E-value=2.2e-15 Score=165.72 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
...+|+|+|.+|+|||||+|+|++..... .+.|.......+.+ .+..+.+|||+|...... .+...+.
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~---~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 388 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTY-KNVKFNVWDVGGQDKIRP--------LWRHYYT 388 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEEES-SSCEEEEEEECCCGGGSG--------GGGGGGT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC---cCCccceeEEEEEe-CCEEEEEEECCCcHHHHH--------HHHHHhc
Confidence 34799999999999999999999876321 24466666666666 778999999999743211 1334567
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+|++++|+|++++....... .+..++. .......|+|+|+||+|+.+
T Consensus 389 ~ad~~i~V~D~~~~~s~~~~~~~~~~~~~---~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 389 GTQGLIFVVDCADRDRIDEARQELHRIIN---DREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHT---SGGGTTCEEEEEEECCSSSS
T ss_pred cCCEEEEEEECcchhHHHHHHHHHHHHhh---hhhcCCCcEEEEEECCCCCc
Confidence 899999999999864333322 2222222 11223459999999999864
No 136
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.61 E-value=5.9e-17 Score=155.64 Aligned_cols=120 Identities=23% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+|+|.+|+|||||+|+|++........+..+.+.....+.+ ++ ..+.+|||||...... .....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~ 102 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT--------ITSSY 102 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCC--------CSCC-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHH--------HHHHH
Confidence 4589999999999999999999987654444444445555555665 44 4688999999743211 11224
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++....... .++..+........|+|+|+||+|+.+.
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~---~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 103 YRGAHGIIVVYDVTDQESFNNVK---QWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp -CCCSEEEECC-CCCSHHHHHHH---HHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred hhcCCEEEEEEECCCHHHHHHHH---HHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 56799999999999864433333 4444432222223599999999998653
No 137
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.3e-15 Score=147.26 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+++|.+|+|||||+|+|++...... ..+++.......+.. ++ ..+.+|||||+..... .....+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 95 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDR--------LRPLSYP 95 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTT--------TGGGGCT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHHH--------HHHhhcC
Confidence 6899999999999999999998764322 122222222233444 44 3678999999843211 1122356
Q ss_pred hcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++...... ..+...+.... ...|+++|+||+|+...
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 96 DTDVILMCFSVDSPDSLENIPEKWVPEVKHFC----PNVPIILVANKKDLRSD 144 (207)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGGGC
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhhhcc
Confidence 79999999999875333333 34445555432 12499999999998654
No 138
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.60 E-value=1.1e-15 Score=168.13 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-------------------------------cccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|++|+|||||+|+|++... ..+...+.|.+.....+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 358999999999999999999986521 1122235566666666665 67
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCCh------HHHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL------EEHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~------~~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.+|||||+.+. ...+...+..+|++++|+|++++.. ..+.......+..+++ +|+|+|
T Consensus 111 ~~~~iiDTPG~~~f--------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~-----~~iIvv 177 (483)
T 3p26_A 111 ANFTIVDAPGHRDF--------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-----HNLIIA 177 (483)
T ss_dssp CEEEEECCCCCGGG--------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC-----CCEEEE
T ss_pred ceEEEEECCCcHHH--------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC-----CcEEEE
Confidence 88999999999431 2445667788999999999988632 2455555666777775 379999
Q ss_pred EecCCCCC
Q 007583 419 WNKIDYHD 426 (597)
Q Consensus 419 lNKiDl~~ 426 (597)
+||+|+.+
T Consensus 178 iNK~Dl~~ 185 (483)
T 3p26_A 178 MNKMDNVD 185 (483)
T ss_dssp EECGGGGT
T ss_pred EECcCccc
Confidence 99999875
No 139
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=142.86 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|.+|+|||||+|+|++.... .....++.......+.+ ++ ..+.+|||+|+..... ....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~---------~~~~ 88 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN---------CERY 88 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC---------THHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh---------HHHH
Confidence 3479999999999999999999986532 22222221111122333 33 3567899999843211 1234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
+..+|++++|+|++++........+...+...........|+|+|+||+|+..
T Consensus 89 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 66799999999998753333333333333222100002349999999999853
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.59 E-value=1.7e-15 Score=154.12 Aligned_cols=125 Identities=23% Similarity=0.260 Sum_probs=74.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccccc------ccceecCceeEEEec-CCc--eEEEeecccccc---------c
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDAR------LFATLDPRLKSVVLP-SGR--KVLLSDTVGFIS---------D 358 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~------~f~Tld~t~~~i~l~-~g~--~i~LiDTpG~i~---------~ 358 (597)
..+|+|+|++|+|||||+|+|++......+. ...|+........+. ++. .+.++||||+.. .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 4799999999999999999999988655543 245555544444443 333 789999999832 2
Q ss_pred chhhHHHHHHHhHHHHH----------hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 359 LPLQLVDAFHATLEEVV----------EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~----------~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+...+...|...+..-. .+|+++++++.+..........++..+.. ..|+|+|+||+|+....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-------TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-------cCCEEEEEeccCCCCHH
Confidence 23333444444444321 25788888876553233333333344433 24999999999987543
No 141
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.59 E-value=1.8e-15 Score=147.72 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+|+|.+|+|||||+++|++....... ..++.......+.+ ++ ..+.+|||+|...... .....+
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 96 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETY-VPTVFENYTACLET-EEQRVELSLWDTSGSPYYDN--------VRPLCY 96 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSSC-CCCSEEEEEEEEEC---CEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCc-CCeeeeeEEEEEEE-CCEEEEEEEEECCCCHhHHH--------HHHHHc
Confidence 489999999999999999999987643221 11111111222333 33 4678999999843211 112235
Q ss_pred HhcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++..... ...+...+.... ...|+++|+||+|+..+
T Consensus 97 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 97 SDSDAVLLCFDISRPETVDSALKKWRTEILDYC----PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC----TTSEEEEEEECGGGGGC
T ss_pred CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccc
Confidence 67999999999998744443 344555555542 13599999999998653
No 142
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.59 E-value=5.8e-15 Score=141.52 Aligned_cols=123 Identities=14% Similarity=0.041 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEE--e--cCCceEEEeecccccccchhhHHHHHHHhH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVV--L--PSGRKVLLSDTVGFISDLPLQLVDAFHATL 371 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~--l--~~g~~i~LiDTpG~i~~lp~~lve~f~sTl 371 (597)
...+|+++|.+|+|||||+++|++..... ...+.+.+...+. + .....+.+|||+|.......... ..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~ 90 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD-----YE 90 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----HH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----cc
Confidence 45899999999999999999999864322 1112223222222 2 23467899999998432111000 02
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 372 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 372 ~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+..+|++++|+|++++ ..+....+..++..+.. .....|+++|+||+|+.+.+
T Consensus 91 ~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYK-VNPDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp HHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGGGSCHH
T ss_pred cccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccccCchh
Confidence 345679999999999986 55666677777776510 11135999999999997643
No 143
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=154.62 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=75.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVV 375 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~ 375 (597)
..+|+|+|.+|+|||||+|+|++..... . ..|.......+.. .+..+.+|||||... |.. ....+.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~-~--~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~---------~~~~~~~~~~ 231 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEY-KNISFTVWDVGGQDK---------IRPLWRHYFQ 231 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEE-E--EEETTEEEEEEEE-TTEEEEEEECC--------------CCSHHHHHT
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCC-c--ccccceEEEEEec-CcEEEEEEECCCCHh---------HHHHHHHHhc
Confidence 4789999999999999999999876322 1 2354544555555 678899999999732 211 233466
Q ss_pred hcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++...... ..+..++... .....|+|+|+||+|+.+.
T Consensus 232 ~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 232 NTQGLIFVVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp TEEEEEEEEETTCSSSHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCchHHHHHHHHHHHHHHhhh---ccCCCeEEEEEECccCCcc
Confidence 79999999999876443332 2233333222 2234599999999998654
No 144
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.58 E-value=8.6e-15 Score=138.01 Aligned_cols=117 Identities=25% Similarity=0.267 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccc--hhhHHHHHHH----hH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL--PLQLVDAFHA----TL 371 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l--p~~lve~f~s----Tl 371 (597)
++|+++|.+|+|||||+|+|++........++.|... ..+.+ . .+.++||||+.... +....+.+.. .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999875544444444333 23333 2 78899999964221 1111223322 22
Q ss_pred HH-HHhcCEEEEEEeCCCCChHHHHHH------------HHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 372 EE-VVEADLLVHVLDCTAPNLEEHRTT------------VLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 372 ~~-l~~aDliL~VvDas~~~~~~~~~~------------v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.. ...+++++.|+|.++. ...... +...+...+ .|+++|+||+|+...
T Consensus 77 ~~~~~~~~~v~~v~d~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAA--PEIIKRWEKRGEIPIDVEFYQFLRELD------IPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHGGGCCEEEEEEETTHH--HHHHHHHHHTTCCCHHHHHHHHHHHTT------CCEEEEEECGGGCSC
T ss_pred HhhhccCCEEEEEEcchhh--hhHHHhhhccCccHHHHHHHHHHHhcC------CceEEEeehHhccCc
Confidence 22 4456788888886532 111111 222233333 499999999998654
No 145
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.58 E-value=1e-14 Score=148.68 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccc------cccc----------------------ceecC-------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSD------ARLF----------------------ATLDP------------- 334 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~------~~~f----------------------~Tld~------------- 334 (597)
..+.|+|+|.+|||||||+|+|+|...... ..+. +|.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999875311 1111 11110
Q ss_pred ----------ceeEEEecCCceEEEeecccccccc----hhhHHHHHHH-hHHHHHhcCEEE-EEEeCCCCChHHHHHHH
Q 007583 335 ----------RLKSVVLPSGRKVLLSDTVGFISDL----PLQLVDAFHA-TLEEVVEADLLV-HVLDCTAPNLEEHRTTV 398 (597)
Q Consensus 335 ----------t~~~i~l~~g~~i~LiDTpG~i~~l----p~~lve~f~s-Tl~~l~~aDliL-~VvDas~~~~~~~~~~v 398 (597)
..-.+..+++..+.+|||||+.... +......+.. +...+..++.++ +|+|++.+.......
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-- 182 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-- 182 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH--
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH--
Confidence 0001122234789999999997522 3333333433 445556677555 799998753332222
Q ss_pred HHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 399 LQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 399 ~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.++..+.- ...|+|+|+||+|+.+.
T Consensus 183 -~~~~~~~~---~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 183 -KIAKEVDP---QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp -HHHHHHCT---TCSSEEEEEECGGGSCT
T ss_pred -HHHHHhCC---CCCeEEEEEEccccCCC
Confidence 23333332 12499999999998754
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.57 E-value=7.9e-15 Score=158.42 Aligned_cols=126 Identities=27% Similarity=0.353 Sum_probs=92.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchh--hHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPL--QLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~--~lve~f~sTl~~l 374 (597)
...|+|+|++|||||||+|+|++....+.+++|+|+.++.+.+.+.+...+.++||||++..... .+...| +..+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f---l~~~ 233 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF---LRHI 233 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH---HHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH---HHHH
Confidence 46799999999999999999999877778889999999998888754578999999999754221 111122 4456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..++.+++|+|++ .....+.......+..+.. ....+|.|+|+||+|+...
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~-aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP-ALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH-HHHHSCEEEEEECCTTSCH
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH-HhhcCCEEEEEECCChhhH
Confidence 6799999999997 3344455555555554431 1112599999999998653
No 147
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.57 E-value=2.1e-15 Score=141.27 Aligned_cols=118 Identities=18% Similarity=0.165 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|++|+|||||+++|++.... ....+++.+.....+.. ++ ..+.+|||||+.... ......
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~~~~~ 76 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVV-NGATVNLGLWDTAGQEDYN--------RLRPLS 76 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC--------CEEECCCC-CTTT--------TTGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEE-CCEEEEEEEEECCCChhhh--------hhHHhh
Confidence 3579999999999999999999986532 12112111111111112 23 345699999984321 112233
Q ss_pred HHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++....... .+...+.... ...|+++|+||+|+.+.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 77 YRGADVFILAFSLISKASYENVSKKWIPELKHYA----PGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhhcC
Confidence 56799999999998764333332 3444454432 13599999999998654
No 148
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.57 E-value=3.8e-16 Score=172.16 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
+.|+|+++|++|+|||||+++|++..+......+.|.+.....+.+ ++..+.+|||||+..... .....+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~--------~~~~~~~ 73 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTS--------MRARGAQ 73 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTT--------SBCSSSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHH--------HHHHHHh
Confidence 4689999999999999999999976544444445555554444444 567899999999843211 1223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+|++++|+|++++.. .+....+..+...++ |+|+|+||+|+.+.
T Consensus 74 ~aD~aILVVda~~g~~-~qT~e~l~~~~~~~v------PiIVviNKiDl~~~ 118 (501)
T 1zo1_I 74 ATDIVVLVVAADDGVM-PQTIEAIQHAKAAQV------PVVVAVNKIDKPEA 118 (501)
T ss_dssp SCSSEEEEEETTTBSC-TTTHHHHHHHHHTTC------CEEEEEECSSSSTT
T ss_pred hCCEEEEEeecccCcc-HHHHHHHHHHHhcCc------eEEEEEEecccccc
Confidence 7999999999988633 333334455555565 89999999999753
No 149
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.57 E-value=4e-14 Score=162.23 Aligned_cols=121 Identities=19% Similarity=0.217 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCce--------eEE----------------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL--------KSV---------------------------- 339 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~--------~~i---------------------------- 339 (597)
+.++|+|+|.+|+|||||+|+|+|..+.+.+..++|..++. ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 45899999999999999999999987654443333411100 011
Q ss_pred ------------------EecCC---ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHH
Q 007583 340 ------------------VLPSG---RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTV 398 (597)
Q Consensus 340 ------------------~l~~g---~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v 398 (597)
.+|.. ..+.++||||+.... . ....+...+..+|++++|+|++++........+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--~---~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l 222 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--A---RNELSLGYVNNCHAILFVMRASQPCTLGERRYL 222 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--T---CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--h---HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence 11110 368999999985421 1 123455677889999999999887555444444
Q ss_pred HHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 399 LQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 399 ~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+.+...+ .|+++|+||+|+...
T Consensus 223 ~~~l~~~~------~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 223 ENYIKGRG------LTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHTTTSC------CCEEEEEECGGGGGG
T ss_pred HHHHHhhC------CCEEEEEECcccccc
Confidence 33333222 489999999998643
No 150
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.57 E-value=5.1e-15 Score=143.06 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...+|+++|.+|+|||||+++|++.... ....+++.+.....+.+ ++ ..+.+|||||+..... + ....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--~------~~~~ 77 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR--L------RPLS 77 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------CGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH--H------HHhh
Confidence 4589999999999999999999986532 22222222333333444 44 3678999999843211 1 1123
Q ss_pred HHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+..+|++++|+|++++....... .+...+.... ...|+++|+||+|+...
T Consensus 78 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 78 YRGADIFVLAFSLISKASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhC
Confidence 56799999999998763333332 3444444432 13599999999998654
No 151
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.57 E-value=1.1e-14 Score=155.02 Aligned_cols=102 Identities=18% Similarity=0.291 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
.+|+++|++|+|||||+++|+ ..+.|.+.....+.+ .+..+.+|||||+.+. ...+...+..+
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f--------~~~~~~~~~~a 84 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT--------LKSLITALNIS 84 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC--------HHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH--------HHHHHHHHHHC
Confidence 489999999999999999998 235566665555555 5678999999999432 23445567889
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcE-EEEEe-cCCC
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM-IEVWN-KIDY 424 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~-IiVlN-KiDl 424 (597)
|++++|+| +.+ ...+....+..+..+++ |. |+|+| |+|+
T Consensus 85 D~ailVvd-~~g-~~~qt~e~~~~~~~~~i------~~~ivvvNNK~Dl 125 (370)
T 2elf_A 85 DIAVLCIP-PQG-LDAHTGECIIALDLLGF------KHGIIALTRSDST 125 (370)
T ss_dssp SEEEEEEC-TTC-CCHHHHHHHHHHHHTTC------CEEEEEECCGGGS
T ss_pred CEEEEEEc-CCC-CcHHHHHHHHHHHHcCC------CeEEEEEEeccCC
Confidence 99999999 665 45566666677777776 66 99999 9998
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.56 E-value=5.2e-15 Score=159.04 Aligned_cols=115 Identities=19% Similarity=0.220 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC-------Cc----------ccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD-------LF----------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~-------v~----------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
...+|+++|++|+|||||+|+|++.. .. .+...+.|.+.....+.. .+..+.+|||||+.+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH
Confidence 45899999999999999999999731 00 001233444443333333 5678999999999531
Q ss_pred chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCC
Q 007583 359 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 426 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~ 426 (597)
...+...+..+|++++|+|++++.. .+...++..+...++ | +|+|+||+|+.+
T Consensus 89 --------~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~~i------p~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 --------IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVGV------PYIVVFMNKVDMVD 142 (405)
T ss_dssp --------HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHTTC------CCEEEEEECGGGCC
T ss_pred --------HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC------CEEEEEEECccccC
Confidence 2345566778999999999998743 455556667777765 6 889999999875
No 153
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.56 E-value=3.7e-14 Score=146.94 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-CcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHH--HHhHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAF--HATLEEV 374 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~-v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f--~sTl~~l 374 (597)
.+|+++|.+|+|||||+|+|++.. ......++.|.+.....+.+.++..+.+|||||+... .+.+ ......+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHHHh
Confidence 689999999999999999999874 3344567778887777777656778999999998432 1111 1233455
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++........+..++..+... ....|+++|+||+|+...
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCH
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccch
Confidence 7899999999999886666665555555554210 112499999999998763
No 154
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2e-15 Score=170.52 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=86.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccc-------------------------------cccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDA-------------------------------RLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~-------------------------------~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|++|+|||||+|+|++....+.. ..+.|.+.....+.. .+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~ 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CC
Confidence 4689999999999999999999976432211 246677777777776 67
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCC------hHHHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN------LEEHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~------~~~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.+|||||+.. ....+...+..+|++++|+|++.+. ...+.......+..+++ +|+|+|
T Consensus 245 ~~~~iiDTPG~e~--------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi-----~~iIVV 311 (611)
T 3izq_1 245 ANFTIVDAPGHRD--------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-----HNLIIA 311 (611)
T ss_dssp CEEEEEECCSSSC--------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTC-----CEEEEE
T ss_pred ceEEEEECCCCcc--------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCC-----CeEEEE
Confidence 8999999999943 1244556677899999999998641 12344445556666665 369999
Q ss_pred EecCCCCC
Q 007583 419 WNKIDYHD 426 (597)
Q Consensus 419 lNKiDl~~ 426 (597)
+||+|+.+
T Consensus 312 vNKiDl~~ 319 (611)
T 3izq_1 312 MNKMDNVD 319 (611)
T ss_dssp EECTTTTT
T ss_pred Eecccccc
Confidence 99999876
No 155
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.56 E-value=2.3e-14 Score=147.62 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=75.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE--EEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV--LLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i--~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||++++++.... .....++.+.....+.. ++..+ .+|||||+.... ......+
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 224 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD--------RLRPLSY 224 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT--------TTGGGGC
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhh--------HHHHHhc
Confidence 489999999999999999999976532 22223333333333333 55544 499999984321 1112235
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++....... .+...+..... ..|+++|+||+|+...
T Consensus 225 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRDD 274 (332)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHTC
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhcccc
Confidence 6799999999998764333332 33344444321 3599999999998654
No 156
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.55 E-value=1.7e-14 Score=142.43 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
.+|+|+|.+|+|||||+++++.........+....+.....+.. ++. .+.+|||+|+.+. ..+ +...++
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~--~~l------~~~~~~ 84 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERF--RSL------IPSYIR 84 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTTC--GGG------HHHHHT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhh--hhH------HHHHhc
Confidence 68999999999999999999976532221111112222333333 443 5679999998432 111 233567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 376 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 376 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.++++++|+|.++..+......++..+....- ...|+|+|.||+|+.+
T Consensus 85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~---~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTERG---SDVIIMLVGNKTDLAD 132 (216)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT---TSSEEEEEEECTTCGG
T ss_pred cccEEEEEeecchhHHHHHHHHHHHHHHHhcC---CCCeEEEEeeccchHh
Confidence 89999999999886544444444444433321 2359999999999754
No 157
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.54 E-value=7.2e-15 Score=143.31 Aligned_cols=117 Identities=19% Similarity=0.051 Sum_probs=71.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH-cCCCcc-cccccceecCceeEEEec-CCceEEEeecccccccchhhHHHHHHHhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALS-DSDLFS-DARLFATLDPRLKSVVLP-SGRKVLLSDTVGFISDLPLQLVDAFHATLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~-g~~v~~-~~~~f~Tld~t~~~i~l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~ 372 (597)
...+|+++|.+|+|||||+|+|+ +..... ....+.|.... .+... .+..+.+|||||+..... ....
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~ 83 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL--VFHTNRGPIKFNVWDTAGQEKFGG--------LRDG 83 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEE--EEEETTEEEEEEEEEECSGGGTSC--------CCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEE--EEEECCEEEEEEEEeCCChHHHhH--------HHHH
Confidence 45799999999999999999944 432111 11122222221 22221 234678999999743211 1223
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|++++........+...+.... ...|+|+|+||+|+.+
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKD 133 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS----TTCCEEEEEECTTSSS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECCcccc
Confidence 4567999999999987643333333333333321 1349999999999864
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.54 E-value=1.1e-14 Score=158.03 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccc---------------------------------cccceecCceeEEEec
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDA---------------------------------RLFATLDPRLKSVVLP 342 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~---------------------------------~~f~Tld~t~~~i~l~ 342 (597)
...+|+++|++|+|||||+|+|++....... ..+.|.+.....+..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~- 101 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST- 101 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-
Confidence 4579999999999999999999865311000 012333333333333
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
.+..+.+|||||+.+. ...+...+..+|++++|+|++++.. .+......++..+++ +|+|+|+||+
T Consensus 102 ~~~~~~iiDtpGh~~f--------~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~~-----~~iIvviNK~ 167 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY--------TRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLGI-----KHIVVAINKM 167 (434)
T ss_dssp SSEEEEEEECCCSGGG--------HHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTTC-----CEEEEEEECT
T ss_pred CCceEEEEECCChHHH--------HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC-----CeEEEEEEcC
Confidence 5678999999998431 1234456788999999999998743 444445566666665 3689999999
Q ss_pred CCCC
Q 007583 423 DYHD 426 (597)
Q Consensus 423 Dl~~ 426 (597)
|+.+
T Consensus 168 Dl~~ 171 (434)
T 1zun_B 168 DLNG 171 (434)
T ss_dssp TTTT
T ss_pred cCCc
Confidence 9975
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.54 E-value=2.6e-14 Score=160.74 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC--C-------------cccccccceecCceeEEEec--CC--ceEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD--L-------------FSDARLFATLDPRLKSVVLP--SG--RKVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~--v-------------~~~~~~f~Tld~t~~~i~l~--~g--~~i~LiDTpG~i 356 (597)
.+++|+|+|+.|+|||||+++|+... + ..+...+.|+......+.+. ++ ..+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 46899999999999999999997521 1 01112344554444445442 23 467899999995
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+. . ......+..+|++++|+|++++... +....+..+...++ |+|+|+||+|+.+.
T Consensus 85 dF-----~---~ev~r~l~~aD~aILVVDa~~gv~~-qt~~~~~~a~~~~i------piIvviNKiDl~~a 140 (600)
T 2ywe_A 85 DF-----S---YEVSRALAACEGALLLIDASQGIEA-QTVANFWKAVEQDL------VIIPVINKIDLPSA 140 (600)
T ss_dssp GG-----H---HHHHHHHHTCSEEEEEEETTTBCCH-HHHHHHHHHHHTTC------EEEEEEECTTSTTC
T ss_pred hH-----H---HHHHHHHHhCCEEEEEEECCCCccH-HHHHHHHHHHHCCC------CEEEEEeccCcccc
Confidence 42 1 1233456789999999999987443 44444444445554 89999999998654
No 160
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.53 E-value=6.1e-14 Score=134.53 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=73.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~ 372 (597)
...+|+|+|.+|+|||||+|+|++... ........+.+.....+.+ ++. .+.++||+|..... .+ ....
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~------~~-~~~~ 76 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGEN------EW-LHDH 76 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----------CT-TGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchh------hh-HHHh
Confidence 357999999999999999999997432 2222222333333344555 554 45789999974310 00 0112
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|+++.........+...+...... ...|+|+|.||+|+..
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~--~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT--EDIPIILVGNKSDLVR 128 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT--SCCCEEEEEECTTCGG
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCeEEEEEechhhhc
Confidence 345689999999998764444444444444443211 2359999999999753
No 161
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.53 E-value=3.4e-14 Score=159.92 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc---------------ccccccceecCceeEEEec--CC--ceEEEeeccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---------------SDARLFATLDPRLKSVVLP--SG--RKVLLSDTVGFI 356 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~---------------~~~~~f~Tld~t~~~i~l~--~g--~~i~LiDTpG~i 356 (597)
.+++|+|+|+.|+|||||+++|+..... .+...+.|.......+.+. ++ ..+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 5789999999999999999999863211 1112344554444455443 22 467899999994
Q ss_pred ccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 357 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 357 ~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+. . ......+..+|++++|+|++++.... ....+..+...++ |+|+|+||+|+.+.
T Consensus 83 dF-----~---~ev~~~l~~aD~aILVVDa~~gv~~q-t~~~~~~~~~~~i------piIvViNKiDl~~a 138 (599)
T 3cb4_D 83 DF-----S---YEVSRSLAACEGALLVVDAGQGVEAQ-TLANCYTAMEMDL------EVVPVLNKIDLPAA 138 (599)
T ss_dssp GG-----H---HHHHHHHHHCSEEEEEEETTTCCCTH-HHHHHHHHHHTTC------EEEEEEECTTSTTC
T ss_pred HH-----H---HHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHHHHHCCC------CEEEeeeccCcccc
Confidence 32 1 22344567799999999999874433 3333444444454 89999999998754
No 162
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=9e-14 Score=136.57 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~ 372 (597)
...+|+|+|.+|+|||||+|+|++.... .......+.+.....+.+ ++. .+.++||+|.... ..+ ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~------~~~-l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGE------NEW-LHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHH------HHH-HHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcch------hhh-HHHH
Confidence 3478999999999999999999975432 222222222333344555 554 4578999997321 111 1112
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
.+..+|++++|+|+++.........+...+.... .....|+|+|+||+|+..
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~--~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRAR--QTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG--GGTTSCEEEEEECTTCGG
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCcEEEEEEChHHhc
Confidence 2456899999999987533333333333333321 122359999999999853
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.53 E-value=2.5e-14 Score=153.51 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC------c----------ccccccceecCceeEEEecCCceEEEeecccccccch
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL------F----------SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP 360 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v------~----------~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp 360 (597)
..+|+++|++|+|||||+++|++... . .+...+.|.+.....+.. .+..+.++||||+.+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD--- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH---
Confidence 46899999999999999999997410 0 011234455543333333 567899999999932
Q ss_pred hhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCC
Q 007583 361 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 426 (597)
Q Consensus 361 ~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~ 426 (597)
....+...+..+|++++|+|++++.. .+....+..+...++ | +|+|+||+|+.+
T Consensus 79 -----f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~~v------p~iivviNK~Dl~~ 133 (397)
T 1d2e_A 79 -----YVKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQIGV------EHVVVYVNKADAVQ 133 (397)
T ss_dssp -----HHHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHTTC------CCEEEEEECGGGCS
T ss_pred -----HHHHHHhhHhhCCEEEEEEECCCCCC-HHHHHHHHHHHHcCC------CeEEEEEECcccCC
Confidence 12345556778999999999998744 344444466777665 6 789999999875
No 164
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.29 E-value=6.8e-16 Score=148.56 Aligned_cols=118 Identities=18% Similarity=0.183 Sum_probs=72.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+++|++.... .....++.+.....+.. ++. .+.+|||||+... .......+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~~~~~ 99 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY--------DRLRPLSY 99 (204)
Confidence 378999999999999999999976532 22222222222222222 333 4569999998321 11122345
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 375 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+|++++|+|++++....... .+...+.... ...|+++|+||+|+.+..
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDK 150 (204)
Confidence 6799999999998764333332 3333333221 135999999999997543
No 165
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.53 E-value=1.4e-14 Score=137.17 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC-CceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GRKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~-g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
...+|+++|++|+|||||+|+|++...... ...+........+.+.+ ...+.+|||||+.... . .....+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~------~~~~~~ 76 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN-YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--N------VRPLSY 76 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT--T------TGGGGC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEECCEEEEEEEEECCCChhhh--h------hHHhhc
Confidence 457999999999999999999998653221 11111122222333321 2467899999984321 0 011235
Q ss_pred HhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 375 VEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+|++++|+|++++...... ..+...+.... ...|+++|+||+|+...
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 77 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGGC
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEEEcchhhcc
Confidence 679999999999875333333 33334444432 13599999999998643
No 166
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.52 E-value=6.2e-14 Score=132.97 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe------cCCceEEEeecccccccchhhHHHHHHH-h
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL------PSGRKVLLSDTVGFISDLPLQLVDAFHA-T 370 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l------~~g~~i~LiDTpG~i~~lp~~lve~f~s-T 370 (597)
.+|+|+|.+|||||||+|+|++...........|.........+ .....+.+|||+|+.. +.. .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~ 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE---------FYSTH 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHH---------HHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH---------HHHhh
Confidence 58999999999999999999985311111111121111111111 1245778999999832 211 2
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 371 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 371 l~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
...+..+|++++|+|++++. .....+..++..+... ....|+|+|.||+|+...
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~--~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQ--AEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCH--HHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCH
T ss_pred HHHccCCcEEEEEEeCCcch--hHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccc
Confidence 23355689999999998751 1222333333332110 012489999999998653
No 167
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=140.54 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccc--cceecCceeEEEecCCceEEEeecccccccch--hhHHHHHHH-h
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARL--FATLDPRLKSVVLPSGRKVLLSDTVGFISDLP--LQLVDAFHA-T 370 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~--f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp--~~lve~f~s-T 370 (597)
..++|+|+|++|+|||||+|+|+|........+ +.|..+....+.+ ++..+.+|||||+..... ......+.. .
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999999886555544 5666666666666 788999999999864311 112223322 2
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 371 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 371 l~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
......+|++++|+|+++. .......+..++..++.. ...|+++|+||+|+....
T Consensus 107 ~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC---
T ss_pred HhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcc
Confidence 2334467999999999764 334444555555444321 124899999999987654
No 168
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.51 E-value=3.9e-14 Score=162.60 Aligned_cols=127 Identities=23% Similarity=0.259 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccccccccee-------------------------------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL------------------------------------------- 332 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tl------------------------------------------- 332 (597)
..|.|+|+|++|+|||||+|+|+|..+...+...+|.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 5799999999999999999999997653222222221
Q ss_pred --------cCceeEEEecCCceEEEeeccccccc----chhhHHHHHHHhHHHH--HhcCEEEEEEeCCCCChHHHHHHH
Q 007583 333 --------DPRLKSVVLPSGRKVLLSDTVGFISD----LPLQLVDAFHATLEEV--VEADLLVHVLDCTAPNLEEHRTTV 398 (597)
Q Consensus 333 --------d~t~~~i~l~~g~~i~LiDTpG~i~~----lp~~lve~f~sTl~~l--~~aDliL~VvDas~~~~~~~~~~v 398 (597)
++....+..++..++.|+||||+... .|.+....+......+ ..+|++++|+|++.+........+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 12223344556678899999999863 2444444443333333 468999999999876433333233
Q ss_pred HHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 399 LQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 399 ~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
...+...+ .|+|+|+||+|+++..
T Consensus 210 l~~L~~~g------~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 210 AKEVDPQG------QRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHCTTC------SSEEEEEECTTSSCTT
T ss_pred HHHHHhcC------CCEEEEEeCcccCCcc
Confidence 34343333 4999999999997643
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.50 E-value=1.4e-13 Score=132.63 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cc-cccccceecCceeEEEecCCceEEEeeccccccc-chhhHHHHHHHh--
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD-LPLQLVDAFHAT-- 370 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~-lp~~lve~f~sT-- 370 (597)
...+|+|+|++|||||||+|+|+|... .. ....+.|.. ...+.+ ++ .+.++||||+... .+....+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEE-ET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEe-cC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 347899999999999999999998751 11 112222221 122333 22 6789999998531 111111223222
Q ss_pred --HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 371 --LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 371 --l~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+.....++.+++|+|++.+... ....+..++...++ |+++|.||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~------~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVDSNI------AVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHTTC------CEEEEEECGGGSCH
T ss_pred HHHHhhhcccEEEEEEECCCCCch-hHHHHHHHHHHcCC------CeEEEEecccCCCc
Confidence 2223468899999999876432 23345566666654 88999999998754
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.49 E-value=2.6e-13 Score=130.31 Aligned_cols=118 Identities=21% Similarity=0.180 Sum_probs=75.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc--eEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR--KVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~--~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+|+|++|||||||+++|++........+..+.++..+.+.+ +|. .+.+|||+|..... .+ .....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~--~~------~~~~~ 75 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYR--RI------TSAYY 75 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTT--CC------CHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhh--hh------hHHHH
Confidence 478999999999999999999997644333333334555666766 554 45789999984321 11 12234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..++++++|+|+++.........+...+..... ...|+++|+||+|+..
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLTYENVERWLKELRDHAD---SNIVIMLVGNKSDLRH 124 (199)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGG
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEECccccc
Confidence 568999999999875332222223333333211 2358999999999853
No 171
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.49 E-value=3.7e-14 Score=137.79 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=73.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC--ceEEEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+++|.+|+|||||+|+|++...... ...++.......+.+ ++ ..+.+|||||+.... .+ ....+
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--~~------~~~~~ 97 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPEN-YVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYD--NV------RPLSY 97 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEES-SSSEEEEEEEEECCSGGGT--TT------GGGGC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEE-CCEEEEEEEEeCCCcHhhh--HH------HHhhc
Confidence 47999999999999999999998764322 111111222223333 33 467899999974321 11 11235
Q ss_pred HhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..+|++++|+|++++...... ..+...+.... ...|+|+|+||+|+..
T Consensus 98 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 98 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGG
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEEechhhcc
Confidence 679999999999875333333 33434444432 1359999999999864
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.48 E-value=1.2e-14 Score=158.95 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC--Ccc-----------------------------cccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD--LFS-----------------------------DARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~--v~~-----------------------------~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|++|+|||||+|+|++.. +.. +...+.|.+.....+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 45799999999999999999998641 110 00234566666555555 56
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChH------HHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE------EHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~------~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.+|||||+.+ ....+...+..+|++++|+|++++... .+....+..+..+++ .++|+|
T Consensus 85 ~~~~iiDtPGh~~--------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v-----~~iivv 151 (458)
T 1f60_A 85 YQVTVIDAPGHRD--------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV-----RQLIVA 151 (458)
T ss_dssp EEEEEEECCCCTT--------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC-----CEEEEE
T ss_pred ceEEEEECCCcHH--------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCC-----CeEEEE
Confidence 7899999999842 123355667789999999999865222 034444455666665 248999
Q ss_pred EecCCCCC
Q 007583 419 WNKIDYHD 426 (597)
Q Consensus 419 lNKiDl~~ 426 (597)
+||+|+.+
T Consensus 152 iNK~Dl~~ 159 (458)
T 1f60_A 152 VNKMDSVK 159 (458)
T ss_dssp EECGGGGT
T ss_pred EEcccccc
Confidence 99999873
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.48 E-value=1.5e-15 Score=171.16 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCC-------------------------------cccccccceecCceeEEEecC
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPS 343 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~ 343 (597)
+..++|+++|++|+|||||+|+|++... ..+...+.|.+.....+.+ +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 3568999999999999999999974210 0111345566666655555 5
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCC----h--HHHHHHHHHHHHHcCCCccCCCcEEE
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN----L--EEHRTTVLQVLQQVGVSEEKLKNMIE 417 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~----~--~~~~~~v~~iL~~lgi~~~~~~P~Ii 417 (597)
+..+.||||||+..... .+...+..+|++++|+|++++. . ..+.......+..+++ .++|+
T Consensus 254 ~~~i~iiDTPGh~~f~~--------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgi-----p~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFIS--------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGI-----SEIVV 320 (592)
T ss_dssp -----CCEEESSSEEEE--------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSC-----CCEEE
T ss_pred CeEEEEEECCChHHHHH--------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC-----CeEEE
Confidence 67899999999854321 1233456699999999998642 1 3444555567777776 14899
Q ss_pred EEecCCCCC
Q 007583 418 VWNKIDYHD 426 (597)
Q Consensus 418 VlNKiDl~~ 426 (597)
|+||+|+++
T Consensus 321 viNKiDl~~ 329 (592)
T 3mca_A 321 SVNKLDLMS 329 (592)
T ss_dssp EEECGGGGT
T ss_pred EEecccccc
Confidence 999999875
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.48 E-value=6e-14 Score=156.00 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=71.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCcee--------EEEec---CCceEEEeecccccccchhhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLK--------SVVLP---SGRKVLLSDTVGFISDLPLQLV 364 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~--------~i~l~---~g~~i~LiDTpG~i~~lp~~lv 364 (597)
...+|+|+|.+|||||||+|+|++...... ...|...... .+.+. .+..+.+|||||..... .+
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~--~~- 114 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPK--ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH--AS- 114 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT--TT-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH--HH-
Confidence 458999999999999999999998763211 1112111111 12221 25688999999963221 11
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 365 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 365 e~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
....+..+|++++|+|+++. +....+...+...+- ..|+|+|+||+|+...
T Consensus 115 -----~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~----~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 115 -----HQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG----KSPVIVVMNKIDENPS 165 (535)
T ss_dssp -----CHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS----SCCEEEEECCTTTCTT
T ss_pred -----HHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC----CCCEEEEEECCCcccc
Confidence 12235569999999999764 344555566665542 2499999999998653
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.47 E-value=5.5e-14 Score=154.02 Aligned_cols=116 Identities=20% Similarity=0.202 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-------------------------------ccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-------------------------------SDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-------------------------------~~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|+.|+|||||+++|++.... .+...+.|++.....+.+ ++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~ 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CC
Confidence 3579999999999999999999742100 011234555555555555 57
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChH------HHHHHHHHHHHHcCCCccCCCc-EEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE------EHRTTVLQVLQQVGVSEEKLKN-MIE 417 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~------~~~~~v~~iL~~lgi~~~~~~P-~Ii 417 (597)
..+.+|||||+.+. ...+...+..+|++++|+|++++..+ .+....+..+..+++ | +|+
T Consensus 121 ~~~~iiDtPGh~~f--------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~v------p~iiv 186 (467)
T 1r5b_A 121 RRFSLLDAPGHKGY--------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI------NHLVV 186 (467)
T ss_dssp EEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTC------SSEEE
T ss_pred eEEEEEECCCcHHH--------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCC------CEEEE
Confidence 88999999999321 23455667889999999999886221 234444455666665 5 899
Q ss_pred EEecCCCCC
Q 007583 418 VWNKIDYHD 426 (597)
Q Consensus 418 VlNKiDl~~ 426 (597)
|+||+|+..
T Consensus 187 viNK~Dl~~ 195 (467)
T 1r5b_A 187 VINKMDEPS 195 (467)
T ss_dssp EEECTTSTT
T ss_pred EEECccCCC
Confidence 999999864
No 176
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.47 E-value=6.9e-14 Score=151.82 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC--Cc-----------------------------ccccccceecCceeEEEecCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD--LF-----------------------------SDARLFATLDPRLKSVVLPSG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~--v~-----------------------------~~~~~f~Tld~t~~~i~l~~g 344 (597)
...+|+++|++|+|||||+++|++.. +. .+...+.|.+.....+.. .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 45899999999999999999998641 11 001234555555555555 56
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCC------hHHHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN------LEEHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~------~~~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.+|||||+.+. ...+...+..+|++++|+|++++. +..+....+..+..+++ .|+|+|
T Consensus 84 ~~~~iiDtpG~~~f--------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~-----~~iivv 150 (435)
T 1jny_A 84 YFFTIIDAPGHRDF--------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGL-----DQLIVA 150 (435)
T ss_dssp CEEEECCCSSSTTH--------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTC-----TTCEEE
T ss_pred eEEEEEECCCcHHH--------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC-----CeEEEE
Confidence 78999999999431 133455677899999999999852 22345555566666675 268999
Q ss_pred EecCCCCCc
Q 007583 419 WNKIDYHDE 427 (597)
Q Consensus 419 lNKiDl~~~ 427 (597)
+||+|+.+.
T Consensus 151 iNK~Dl~~~ 159 (435)
T 1jny_A 151 VNKMDLTEP 159 (435)
T ss_dssp EECGGGSSS
T ss_pred EEcccCCCc
Confidence 999999763
No 177
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.46 E-value=7.6e-14 Score=147.29 Aligned_cols=126 Identities=25% Similarity=0.281 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc----------------------------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR---------------------------------------- 335 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t---------------------------------------- 335 (597)
..|.|+|+|.+|||||||+|+|+|..+.......+|..|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999997643111111111111
Q ss_pred -----------eeEEEecCCceEEEeecccccccc----hhhHHHHHHHhH-HHHH-hcCEEEEEEeCCCCChHHHHHHH
Q 007583 336 -----------LKSVVLPSGRKVLLSDTVGFISDL----PLQLVDAFHATL-EEVV-EADLLVHVLDCTAPNLEEHRTTV 398 (597)
Q Consensus 336 -----------~~~i~l~~g~~i~LiDTpG~i~~l----p~~lve~f~sTl-~~l~-~aDliL~VvDas~~~~~~~~~~v 398 (597)
.-.+..+++..+.+|||||+.... |.+..+.+.... ..+. ..+++++|+|++........
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--- 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--- 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH---
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH---
Confidence 011222345689999999986521 344334443322 3333 34577778887654222222
Q ss_pred HHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 399 LQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 399 ~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
..+++.+.- ...|+|+|+||+|+.+.
T Consensus 187 ~~i~~~~~~---~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 187 LKVAKEVDP---QGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHHCT---TCTTEEEEEECGGGSCT
T ss_pred HHHHHHhCc---CCCceEEEeccccccCc
Confidence 234444432 12489999999999754
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.45 E-value=2.5e-13 Score=160.47 Aligned_cols=115 Identities=20% Similarity=0.191 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC----------------cccccccceecCceeEEEecCCceEEEeecccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL 359 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v----------------~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l 359 (597)
...+|+++|++|+|||||+++|++... ..+...+.|.+.....+.. .+..+.+|||||+.+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH--
Confidence 458999999999999999999987410 0112234454443333333 567899999999932
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEEecCCCCC
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 426 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVlNKiDl~~ 426 (597)
....+...+..+|++++|+|++++... +....+..+...++ | +|+|+||+|+.+
T Consensus 372 ------F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~lgI------P~IIVVINKiDLv~ 426 (1289)
T 3avx_A 372 ------YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQVGV------PYIIVFLNKCDMVD 426 (1289)
T ss_dssp ------HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHHTC------SCEEEEEECCTTCC
T ss_pred ------HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHcCC------CeEEEEEeeccccc
Confidence 123455667789999999999987443 34444466666665 6 789999999975
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=8.5e-13 Score=133.29 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHH-H
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLE-E 373 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~-~ 373 (597)
...+|+++|++|+|||||+|+|++... ......+.|.......+.+ ++..+.+|||||+.+.... .+.+...+. .
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~--~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYV--NHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEE--CHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccc--hHHHHHHHHHH
Confidence 358999999999999999999999875 3455566666666666666 7889999999999653211 111111111 1
Q ss_pred --HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCCcc
Q 007583 374 --VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 374 --l~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
...+|++++|+|++..........+.+.+... +. ...+|+++|+||+|+...+
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK--EIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECTTCCCST
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhch--hhhcCEEEEEeCcccCCCC
Confidence 12689999998876543433333444555443 32 1124899999999997544
No 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.44 E-value=1.1e-13 Score=145.58 Aligned_cols=148 Identities=16% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHcC------CCcc-cc
Q 007583 254 LQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDS------DLFS-DA 326 (597)
Q Consensus 254 ~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~~~~~~~~~VaLVG~tgAGKSTLlnaL~g~------~v~~-~~ 326 (597)
++.+||.|++.|..++.........+...+..-... ..+..+|+++|++|+|||||+|+|++. .+.+ ..
T Consensus 17 ~~~~r~~l~~~i~~ie~~~~~~~~~~~~~~~~l~~~----~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 17 RQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPY----CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGG----CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HcCCHHHHHhhhhHhhcCCchhhhHHHHHHHhCCcc----cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 455789999998877655443332222222111110 125689999999999999999999742 2111 11
Q ss_pred ccccee-----------------cCceeEEE-------------------e--cCCceEEEeecccccccchhhHHHHHH
Q 007583 327 RLFATL-----------------DPRLKSVV-------------------L--PSGRKVLLSDTVGFISDLPLQLVDAFH 368 (597)
Q Consensus 327 ~~f~Tl-----------------d~t~~~i~-------------------l--~~g~~i~LiDTpG~i~~lp~~lve~f~ 368 (597)
.++.|. .+...... . ..+.+++++||||+... ..
T Consensus 93 d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~--~~------ 164 (341)
T 2p67_A 93 DPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS--ET------ 164 (341)
T ss_dssp CCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH--HH------
T ss_pred cCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccch--HH------
Confidence 111110 00000000 0 24678999999998531 11
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 369 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 369 sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.....+|++++|+|++.+.. ...+.. ... ..|.++|+||+|+.+.
T Consensus 165 ---~~~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~------~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 165 ---EVARMVDCFISLQIAGGGDD---LQGIKK--GLM------EVADLIVINKDDGDNH 209 (341)
T ss_dssp ---HHHTTCSEEEEEECC---------CCCCH--HHH------HHCSEEEECCCCTTCH
T ss_pred ---HHHHhCCEEEEEEeCCccHH---HHHHHH--hhh------cccCEEEEECCCCCCh
Confidence 12467999999999875421 100000 001 1378999999998653
No 181
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.44 E-value=1.1e-13 Score=146.43 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=25.6
Q ss_pred CcEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007583 538 APDVKISARTGVGLQELLEIIDERLKTL 565 (597)
Q Consensus 538 ~pvv~vSA~tG~Gi~eLL~~I~~~~~~~ 565 (597)
.||+++||.+|.||++|++.|.+.+.+.
T Consensus 258 ~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 258 PPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp CCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999998763
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.43 E-value=1.1e-12 Score=125.53 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE--EEeecccccccchhhHHHHHHHhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV--LLSDTVGFISDLPLQLVDAFHATLEEV 374 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i--~LiDTpG~i~~lp~~lve~f~sTl~~l 374 (597)
..+|+|+|++|||||||+|+|++........+..+.+...+.+.+ +|..+ .+|||+|+..... + ....+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~--~------~~~~~ 99 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRA--I------TSAYY 99 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSC--C------CHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhh--h------hHHHh
Confidence 479999999999999999999997754444444445556667776 56544 5699999854211 1 12234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCC
Q 007583 375 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 375 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~ 426 (597)
..++.+++|+|.++....+....+...+..... ...|+++|+||+|+.+
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDHAD---SNIVIMLVGNKSDLRH 148 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccccc
Confidence 568899999998764222222222232332211 2348999999999853
No 183
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.41 E-value=6.3e-13 Score=128.86 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..++|+++|++|+|||||+|+|++...... ..+..++... . ..+..+.+|||||+.... .....+ ......
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~-~-~~~~~~~l~Dt~G~~~~~--~~~~~~--~~~~~~ 81 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-D-YDGSGVTLVDFPGHVKLR--YKLSDY--LKTRAK 81 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-T-GGGSSCEEEECCCCGGGT--HHHHHH--HHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-E-eeCceEEEEECCCcHHHH--HHHHHH--HHhccc
Confidence 468999999999999999999998763221 0111222110 0 145678999999994321 111111 111123
Q ss_pred hcCEEEEEEeCC-CCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 376 EADLLVHVLDCT-APN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 376 ~aDliL~VvDas-~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.+|++++|+|++ ++. .......+.+++...........|+++|+||+|+.....
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 489999999998 432 333444444555442110012259999999999987643
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.41 E-value=1.6e-12 Score=137.28 Aligned_cols=129 Identities=19% Similarity=0.276 Sum_probs=81.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCc----------------------------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR---------------------------------------- 335 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t---------------------------------------- 335 (597)
..|.|+|+|.+|||||||+|+|+|...........|..|+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 5789999999999999999999997642222212221111
Q ss_pred --------------eeEEEecCCceEEEeecccccccc----hhhHHHHH-HHhHHHHHhcCEEEEEEeCCCCChHHHHH
Q 007583 336 --------------LKSVVLPSGRKVLLSDTVGFISDL----PLQLVDAF-HATLEEVVEADLLVHVLDCTAPNLEEHRT 396 (597)
Q Consensus 336 --------------~~~i~l~~g~~i~LiDTpG~i~~l----p~~lve~f-~sTl~~l~~aDliL~VvDas~~~~~~~~~ 396 (597)
.-.+..+....+.+|||||+.... +....... ..+...+..+|++++|+|.+...... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 111222345578999999997641 22333333 33556678899999999875432221 2
Q ss_pred HHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 397 TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 397 ~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.+..++..+.-. ..|+|+|+||+|+.+...
T Consensus 191 ~~~~l~~~~~~~---~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 191 DAIKISREVDPS---GDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp HHHHHHHHSCTT---CTTEEEEEECGGGCCTTC
T ss_pred HHHHHHHHhccc---CCCEEEEEeCCccCCCcc
Confidence 334555555432 248999999999986543
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.40 E-value=4.8e-12 Score=128.18 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-ccccccceecCceeEEEecCCceEEEeecccccccch--hhHHHHHHHhHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLP--LQLVDAFHATLE 372 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp--~~lve~f~sTl~ 372 (597)
..++|+++|.+|+|||||+|+|++.... .....+.|.++....+.. ++..+.+|||||+.+... ......+... .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~-~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF-L 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH-T
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH-h
Confidence 3589999999999999999999998753 344445555554444544 678899999999965321 1111111110 0
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCccCCCcEEEEEecCCCCCccc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
....+|++++|+|++..........+...+... +.. ...|+|+|+||+|+..++.
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCGGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCcCC
Confidence 123689999998876533333333444444432 321 1248999999999976543
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.9e-13 Score=126.26 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=71.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV 375 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~ 375 (597)
..++|+++|++|||||||+|+|++...... ..+..++... .+ .+..+.+|||||+..... .....+ ...+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~~-~~-~~~~~~l~Dt~G~~~~~~-~~~~~~---~~~~~ 117 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DY-DGSGVTLVDFPGHVKLRY-KLSDYL---KTRAK 117 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CC-CCTTCSEEEETTCCBSSC-CHHHHH---HHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCceee-ee-cCCeEEEEECCCCchHHH-HHHHHH---Hhhcc
Confidence 458999999999999999999998763221 1111222211 11 567889999999854321 111112 22234
Q ss_pred hcCEEEEEEeCC-CCChHHH-HHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 376 EADLLVHVLDCT-APNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 376 ~aDliL~VvDas-~~~~~~~-~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.+|++++|+|++ +...... ...+..++...........|+++|+||+|+.+...
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 589999999998 4311111 12233333322110012259999999999987643
No 187
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.39 E-value=5.7e-13 Score=129.61 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.2
Q ss_pred CcEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007583 538 APDVKISARTGVGLQELLEIIDERLKTL 565 (597)
Q Consensus 538 ~pvv~vSA~tG~Gi~eLL~~I~~~~~~~ 565 (597)
+|++++||.+|.|+.+|++.|.+.+..+
T Consensus 188 ~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 188 AKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5699999999999999999999988765
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=1.2e-12 Score=146.25 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHcCCCc---ccccccceecCceeEEE-------------------------------
Q 007583 295 RGLATVAVVGYTNAGKSTLVSALSDSDLF---SDARLFATLDPRLKSVV------------------------------- 340 (597)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLlnaL~g~~v~---~~~~~f~Tld~t~~~i~------------------------------- 340 (597)
.+.+.|+|+|.+|+|||||+|+|+|..+. +...+ .|... ..+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p-~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEP-TTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSC-CCCSE--EEEECCSSSEEECCC------------------CC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCC-ccceE--EEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 35799999999999999999999998753 22222 22111 0010
Q ss_pred --------ecCC--ceEEEeecccccccchhhHHHH--H-HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC
Q 007583 341 --------LPSG--RKVLLSDTVGFISDLPLQLVDA--F-HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV 407 (597)
Q Consensus 341 --------l~~g--~~i~LiDTpG~i~~lp~~lve~--f-~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi 407 (597)
+++. ..+.++||||+....+..+... | ..+...+..+|++++|+|+++.........+ +..+..
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~---l~~l~~ 216 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEA---IGALRG 216 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHH---HHHTTT
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHH---HHHHHh
Confidence 0000 3688999999975322111111 2 2334456789999999999874333333333 334332
Q ss_pred CccCCCcEEEEEecCCCCCccc
Q 007583 408 SEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 408 ~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
. ..|+++|+||+|+++..+
T Consensus 217 ~---~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 H---EDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp C---GGGEEEEEECGGGSCHHH
T ss_pred c---CCCEEEEEECCCccCHHH
Confidence 1 248999999999987543
No 189
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.32 E-value=6.1e-12 Score=132.22 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=24.5
Q ss_pred cEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007583 539 PDVKISARTGVGLQELLEIIDERLKTL 565 (597)
Q Consensus 539 pvv~vSA~tG~Gi~eLL~~I~~~~~~~ 565 (597)
|++++||++|.|+++|++.|.+.+...
T Consensus 236 ~vl~~Sal~g~gi~~L~~~I~~~~~~~ 262 (337)
T 2qm8_A 236 PVVTISGLHGKGLDSLWSRIEDHRSKL 262 (337)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999988743
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.32 E-value=2.2e-12 Score=138.52 Aligned_cols=88 Identities=27% Similarity=0.320 Sum_probs=49.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEec--------------------C---CceEEEeecccc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--------------------S---GRKVLLSDTVGF 355 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~--------------------~---g~~i~LiDTpG~ 355 (597)
+|+|+|.+|+|||||+|+|++....+.+.+|+|.++..+...+. + ..++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 69999999999999999999987666788899999888764321 2 246889999999
Q ss_pred cccc--hhhHHHHHHHhHHHHHhcCEEEEEEeCCCC
Q 007583 356 ISDL--PLQLVDAFHATLEEVVEADLLVHVLDCTAP 389 (597)
Q Consensus 356 i~~l--p~~lve~f~sTl~~l~~aDliL~VvDas~~ 389 (597)
.... ...+. ...+..+..+|++++|+|++++
T Consensus 82 ~~~a~~~~~l~---~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAHEGRGLG---NKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccchhhhhhHH---HHHHHHHhcCCEEEEEEecccc
Confidence 6421 11111 2223456789999999999875
No 191
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=131.38 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.0
Q ss_pred CcEEEccCCCCCCHHHHHHHHHHHHh
Q 007583 538 APDVKISARTGVGLQELLEIIDERLK 563 (597)
Q Consensus 538 ~pvv~vSA~tG~Gi~eLL~~I~~~~~ 563 (597)
+|++.+||.+|.||.+|++.|.+.+.
T Consensus 229 ~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 229 LQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45999999999999999999988764
No 192
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=131.09 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=63.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccccccc-------ceecCceeEEEec-CCc--eEEEeecccccc---------
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLF-------ATLDPRLKSVVLP-SGR--KVLLSDTVGFIS--------- 357 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f-------~Tld~t~~~i~l~-~g~--~i~LiDTpG~i~--------- 357 (597)
..+|+|+|++|+|||||+|+|++.......... .|.........+. ++. .+.+|||||+..
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 478999999999999999999887643332211 1211111111111 233 578999999932
Q ss_pred cchhhHHHHHHHhHHHHHhc----------CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 358 DLPLQLVDAFHATLEEVVEA----------DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 358 ~lp~~lve~f~sTl~~l~~a----------DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+...+...|...+.....+ ++++++++.+......... .++..+. ...|+|+|+||+|+...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~---~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH---HHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH---HHHHHhc----cCCCEEEEEECCCCCCH
Confidence 22223333444444443322 4678877753222222222 3444443 23599999999998764
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.25 E-value=1.1e-11 Score=123.72 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=25.1
Q ss_pred CcEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007583 538 APDVKISARTGVGLQELLEIIDERLKTL 565 (597)
Q Consensus 538 ~pvv~vSA~tG~Gi~eLL~~I~~~~~~~ 565 (597)
+|++++||.+|.|+++|++.|.+.+.+-
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHhccc
Confidence 4689999999999999999999988763
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=3.2e-11 Score=127.89 Aligned_cols=88 Identities=27% Similarity=0.445 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC----------------ceEEEeecccccccchh
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG----------------RKVLLSDTVGFISDLPL 361 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g----------------~~i~LiDTpG~i~~lp~ 361 (597)
.+|+|||.+|+|||||+|+|++....+.+.+|+|++|..+.+.+++. ..+.++||||++.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 57999999999999999999998866778899999999988887542 46899999999754211
Q ss_pred --hHHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007583 362 --QLVDAFHATLEEVVEADLLVHVLDCTA 388 (597)
Q Consensus 362 --~lve~f~sTl~~l~~aDliL~VvDas~ 388 (597)
.+.. ..+..+..+|+++||+|+++
T Consensus 83 ~~gl~~---~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGN---KFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTC---CHHHHHHTCSEEEEEEECSC
T ss_pred cchHHH---HHHHHHHhcCeEEEEEecCC
Confidence 1211 23556788999999999986
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.17 E-value=6.4e-11 Score=115.46 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=25.0
Q ss_pred CcEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007583 538 APDVKISARTGVGLQELLEIIDERLKTL 565 (597)
Q Consensus 538 ~pvv~vSA~tG~Gi~eLL~~I~~~~~~~ 565 (597)
+|++++||.+|.|+++|++.|.+.+.++
T Consensus 198 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 198 AEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 4699999999999999999999888763
No 196
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.15 E-value=8.1e-11 Score=125.17 Aligned_cols=88 Identities=32% Similarity=0.480 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecC--------------------CceEEEeecccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS--------------------GRKVLLSDTVGFIS 357 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~--------------------g~~i~LiDTpG~i~ 357 (597)
.+|+|||.+|+|||||+|+|++....+.+.+|+|++|+.+...+++ +..+.++||||++.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 4699999999999999999999765667788999999988876532 34689999999976
Q ss_pred cchh--hHHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007583 358 DLPL--QLVDAFHATLEEVVEADLLVHVLDCTA 388 (597)
Q Consensus 358 ~lp~--~lve~f~sTl~~l~~aDliL~VvDas~ 388 (597)
.... .+...| +..+..+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~f---l~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQF---LAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHH---HHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHH---HHHHHhCCEEEEEEECCC
Confidence 4321 222233 556788999999999985
No 197
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.07 E-value=2.5e-10 Score=119.30 Aligned_cols=121 Identities=16% Similarity=0.134 Sum_probs=78.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc-cccccceecCceeEEEecCCceEEEeecccccccchhhHHHHHHHhHHHHHhc
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 377 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~v~~-~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~a 377 (597)
+|+++|..|+|||||++++.+..... ......|.......+ .....+.+|||+|+.+.....+ .+...++.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l-----~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY-----DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH-----HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh-----hhhhhccCC
Confidence 37899999999999999988754221 112234444433333 2346789999999965321000 123446789
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 378 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 378 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+++++|+|+++. .......+.+++..+.-. ....|+++|.||+|+..++
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSH
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchh
Confidence 999999999986 555555565555543110 1135999999999998753
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.07 E-value=9.2e-11 Score=137.09 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcc----------------cccccceecCceeEEEec---------------CC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS----------------DARLFATLDPRLKSVVLP---------------SG 344 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~----------------~~~~f~Tld~t~~~i~l~---------------~g 344 (597)
..++|+|+|++|+|||||+++|++....+ +.....|+......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 35899999999999999999998642111 112233444444444442 14
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
..+.||||||+.+.. ..+...+..+|++++|+|++++... +...++..+...++ |+|+|+||+|+
T Consensus 98 ~~i~liDTPG~~df~--------~~~~~~l~~aD~ailVvDa~~g~~~-qt~~~~~~~~~~~~------p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS--------SEVTAALRVTDGALVVVDTIEGVCV-QTETVLRQALGERI------KPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSC--------HHHHHHHHTCSEEEEEEETTTBSCH-HHHHHHHHHHHTTC------EEEEEEECHHH
T ss_pred ceEEEEECcCchhhH--------HHHHHHHHhCCEEEEEEeCCCCCCH-HHHHHHHHHHHcCC------CeEEEEECCCc
Confidence 578999999996421 1234456789999999999987443 33444444444444 89999999998
Q ss_pred CC
Q 007583 425 HD 426 (597)
Q Consensus 425 ~~ 426 (597)
..
T Consensus 163 ~~ 164 (842)
T 1n0u_A 163 AL 164 (842)
T ss_dssp HH
T ss_pred ch
Confidence 73
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.97 E-value=5.3e-10 Score=119.73 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=54.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCC----------------ceEEEeecccccccch
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG----------------RKVLLSDTVGFISDLP 360 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g----------------~~i~LiDTpG~i~~lp 360 (597)
...|+|||.+|+|||||+|+|++..+.+.+.+|+|.+|..+.+.+++. ..+.++||||+.....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 368999999999999999999998877788899999999998887542 2489999999975322
Q ss_pred hhHHHHH-HHhHHHHHhcCEEEEEEeCCC
Q 007583 361 LQLVDAF-HATLEEVVEADLLVHVLDCTA 388 (597)
Q Consensus 361 ~~lve~f-~sTl~~l~~aDliL~VvDas~ 388 (597)
. .+.. ...+..+..+|+++||+|+++
T Consensus 102 ~--~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 102 N--GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC--
T ss_pred h--hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 1111 134567788999999999875
No 200
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.95 E-value=9.4e-10 Score=121.38 Aligned_cols=119 Identities=17% Similarity=0.199 Sum_probs=68.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH------cCCCccccc-c--ccee--------cCceeEEE------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALS------DSDLFSDAR-L--FATL--------DPRLKSVV------------------ 340 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~------g~~v~~~~~-~--f~Tl--------d~t~~~i~------------------ 340 (597)
...+|+++|++|||||||++.|+ |..+...+. + .+.. ...+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999 655321110 0 0000 00000000
Q ss_pred ecCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCc-EEEEE
Q 007583 341 LPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVW 419 (597)
Q Consensus 341 l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-~IiVl 419 (597)
...+.+++|+||||..... ..+......... +..+|.+++|+|++.+.. ....+ ..+.+. + | .++|+
T Consensus 180 ~~~~~DvvIIDTpG~~~~~-~~l~~el~~~~~-~i~pd~vllVvDa~~g~~--~~~~a-~~~~~~-~------~i~gvVl 247 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQE-DSLFEEMLQVAN-AIQPDNIVYVMDASIGQA--CEAQA-KAFKDK-V------DVASVIV 247 (504)
T ss_dssp HHTTCCEEEEEECCCCTTC-HHHHHHHHHHHH-HHCCSEEEEEEETTCCTT--HHHHH-HHHHHH-H------CCCCEEE
T ss_pred HHCCCcEEEEeCCCCcccc-hhHHHHHHHHHh-hhcCceEEEEEecccccc--HHHHH-HHHHhh-c------CceEEEE
Confidence 0156789999999986421 222233322222 347999999999987632 22222 222221 1 5 38999
Q ss_pred ecCCCCC
Q 007583 420 NKIDYHD 426 (597)
Q Consensus 420 NKiDl~~ 426 (597)
||+|...
T Consensus 248 NK~D~~~ 254 (504)
T 2j37_W 248 TKLDGHA 254 (504)
T ss_dssp ECTTSCC
T ss_pred eCCcccc
Confidence 9999864
No 201
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=3.2e-09 Score=113.71 Aligned_cols=89 Identities=28% Similarity=0.377 Sum_probs=71.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCC----------------ceEEEeecccccccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSG----------------RKVLLSDTVGFISDL 359 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g----------------~~i~LiDTpG~i~~l 359 (597)
..+|+|+|++|||||||+|+|+|..+ .+.+.+|+|++|+.+.+.+++. ..+.++||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 36999999999999999999999877 7788999999999999988541 357899999997543
Q ss_pred hh--hHHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007583 360 PL--QLVDAFHATLEEVVEADLLVHVLDCTA 388 (597)
Q Consensus 360 p~--~lve~f~sTl~~l~~aDliL~VvDas~ 388 (597)
.. .+...| +..+..+|.+++|+|+++
T Consensus 100 s~~e~L~~~f---l~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAF---LSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHH---HHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence 32 122233 455678999999999875
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.85 E-value=8.9e-09 Score=106.32 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=57.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCccccc-c------cceecCceeEEEec-CC--ceEEEeecccccccch-----h
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDAR-L------FATLDPRLKSVVLP-SG--RKVLLSDTVGFISDLP-----L 361 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~-~------f~Tld~t~~~i~l~-~g--~~i~LiDTpG~i~~lp-----~ 361 (597)
...|+|+|++|||||||+|+|.|........ . ..|.......+... .+ ..+.++||+|+..... .
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 3788999999999999999999863222111 0 01111111111111 12 3578999999832110 1
Q ss_pred hHHH----HHHHhHHHHH----------hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 362 QLVD----AFHATLEEVV----------EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 362 ~lve----~f~sTl~~l~----------~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
.+.. .+......+. .+++++++++.+........ .+++..+.- ..|+++|+||+|+...
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~---~~~l~~l~~----~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD---VAFMKAIHN----KVNIVPVIAKADTLTL 170 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH---HHHHHHHTT----TSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH---HHHHHHHHh----cCCEEEEEEeCCCCCH
Confidence 1111 1112222221 12346665654332122221 245555531 2489999999998754
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.72 E-value=2.2e-08 Score=108.14 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccc----cccceecCceeEEEecCC--ceEEEeecccccccchh---------
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDA----RLFATLDPRLKSVVLPSG--RKVLLSDTVGFISDLPL--------- 361 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~----~~f~Tld~t~~~i~l~~g--~~i~LiDTpG~i~~lp~--------- 361 (597)
.+.++|+|++|||||||+|+|+|..+.... .+..+.. ..+.+.-..+ ..+.++|++|+......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 466999999999999999999997532111 1111111 1111111112 15689999998643221
Q ss_pred hHHHHHHHhHHHHH----------hc--C-EEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 362 QLVDAFHATLEEVV----------EA--D-LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 362 ~lve~f~sTl~~l~----------~a--D-liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.+...+...+.... .+ | ++++++|+.++....+ .++++.+.. ..|+|+|+||+|.+.+.
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~~----~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLDS----KVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTCS----CSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHhh----CCCEEEEEcchhccchH
Confidence 11122333333321 11 2 4667778776543333 245555541 24899999999998765
Q ss_pred c
Q 007583 429 M 429 (597)
Q Consensus 429 ~ 429 (597)
+
T Consensus 193 E 193 (427)
T 2qag_B 193 E 193 (427)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=6e-08 Score=104.70 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccccccccee--cCcee--EEEe---cCC--ceEEEeecccccccch-----hhH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL--DPRLK--SVVL---PSG--RKVLLSDTVGFISDLP-----LQL 363 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tl--d~t~~--~i~l---~~g--~~i~LiDTpG~i~~lp-----~~l 363 (597)
..|+|+|++|||||||+|+|+|......+....+. .++.+ .+.+ ..+ ..+.++||+|+..... ..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 67899999999999999999997643222110000 11111 1111 012 2568999999964321 111
Q ss_pred HHHHHHhHHHH------------Hh--cCEEEEEEeCC-CCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 364 VDAFHATLEEV------------VE--ADLLVHVLDCT-APNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 364 ve~f~sTl~~l------------~~--aDliL~VvDas-~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
.+.....+..+ .. +++++++++.+ ++. ..... .++..+.- ..|+|+|+||+|+....
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L-~~~d~---~~lk~L~~----~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-KPLDI---EFMKRLHE----KVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC-CHHHH---HHHHHHTT----TSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC-CHHHH---HHHHHHhc----cCcEEEEEEcccCccHH
Confidence 11111111111 12 34566666554 332 22222 34444431 24899999999998754
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.66 E-value=1e-09 Score=116.67 Aligned_cols=118 Identities=19% Similarity=0.102 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC------CCcccccccceecCceeEEEecCCceEEEeecccccccc--hhhHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS------DLFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL--PLQLVDAFHA 369 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~------~v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l--p~~lve~f~s 369 (597)
..|+++|.+|+|||||+|+|++. .......+++|.+... +. -+..+.++||||+.... ...+...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~--~~~~~~liDtPG~~~~~~~~~~l~~~--- 235 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IP--LESGATLYDTPGIINHHQMAHFVDAR--- 235 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EE--CSTTCEEEECCSCCCCSSGGGGSCTT---
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EE--eCCCeEEEeCCCcCcHHHHHHHHhHH---
Confidence 47999999999999999999986 3344455555544322 22 23458999999997532 2222211
Q ss_pred hHHHH---HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 370 TLEEV---VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 370 Tl~~l---~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.+..+ ...+.+++++|............ .+.+. ....|+++|+||+|.+....
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~------~~~~~~~~v~~k~d~~~~~~ 291 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK------GGRRSFVCYMANELTVHRTK 291 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE------SSSEEEEEEECTTSCEEEEE
T ss_pred HHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc------CCCceEEEEecCCccccccc
Confidence 22333 56899999998732100000000 01111 12248999999999876543
No 206
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.66 E-value=1e-07 Score=102.73 Aligned_cols=117 Identities=18% Similarity=0.238 Sum_probs=65.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccc-cceecCc-eeEEE-ecCCceEEEeecccccccchhhHHHHHHHhHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARL-FATLDPR-LKSVV-LPSGRKVLLSDTVGFISDLPLQLVDAFHATLEE 373 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~-f~Tld~t-~~~i~-l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~ 373 (597)
...++|+|++|||||||+|+|+|......... ....+.+ .+.+. .+....+.++|++|+... ....+.+-..+ .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~-~ 145 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKM-K 145 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHT-T
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHHHHHHHHHc-C
Confidence 37999999999999999999999542211111 0000111 11111 111235789999998532 11111111111 1
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 374 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+...+..++ ++... ...+...+...|...+. |+++|+||.|++
T Consensus 146 L~~~~~~~~-lS~G~--~~kqrv~la~aL~~~~~------p~~lV~tkpdll 188 (413)
T 1tq4_A 146 FYEYDFFII-ISATR--FKKNDIDIAKAISMMKK------EFYFVRTKVDSD 188 (413)
T ss_dssp GGGCSEEEE-EESSC--CCHHHHHHHHHHHHTTC------EEEEEECCHHHH
T ss_pred CCccCCeEE-eCCCC--ccHHHHHHHHHHHhcCC------CeEEEEecCccc
Confidence 333455554 66543 24555566667766654 999999999874
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.65 E-value=2e-09 Score=114.36 Aligned_cols=121 Identities=18% Similarity=0.102 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC-------CcccccccceecCceeEEEecCCceEEEeecccccccc--hhhHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD-------LFSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISDL--PLQLVDAFH 368 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~-------v~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~l--p~~lve~f~ 368 (597)
..|+++|++|+|||||+|+|++.. ......+++|.+... +.+ +..+.++||||+.... ...+.....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 479999999999999999999862 223444555544322 333 2348899999997532 222222221
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCccc
Q 007583 369 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 429 (597)
Q Consensus 369 sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~~ 429 (597)
.........+.+++++|............ .+.+. ....|+++|+||+|.+....
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~------~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS------GGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE------SSSEEEEEEECTTSCEEEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEec------CCCceEEEEecCcccccccc
Confidence 22222345788889988732100000000 01111 12248999999999986543
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.62 E-value=8.5e-08 Score=97.58 Aligned_cols=123 Identities=24% Similarity=0.254 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCccccc-------ccceecCceeEEE-ecCC----ceEEEeecccccccchh----
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDAR-------LFATLDPRLKSVV-LPSG----RKVLLSDTVGFISDLPL---- 361 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~-------~f~Tld~t~~~i~-l~~g----~~i~LiDTpG~i~~lp~---- 361 (597)
++++|+|++|||||||+|+|+|...+.... ...+.. ...+. .+.. ..+.++|++|+......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~--~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE--IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS--CCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee--eeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 689999999999999999999864322110 101100 11111 1121 25689999998643211
Q ss_pred -hHHH----HHHHhHHH-----------HHhcCEEEEEEeCC-CCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCC
Q 007583 362 -QLVD----AFHATLEE-----------VVEADLLVHVLDCT-APNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 424 (597)
Q Consensus 362 -~lve----~f~sTl~~-----------l~~aDliL~VvDas-~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl 424 (597)
.+.. .+...+.. +..+.+.++++|-. ++..... ..+...|... .++|+|+||+|.
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~~-------~~vI~Vi~K~D~ 152 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSKV-------VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHTT-------SEEEEEETTGGG
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHhc-------CcEEEEEecccc
Confidence 1111 12111111 11247788888854 4433333 3333344332 389999999999
Q ss_pred CCcccc
Q 007583 425 HDEEMG 430 (597)
Q Consensus 425 ~~~~~~ 430 (597)
+...+.
T Consensus 153 lt~~e~ 158 (270)
T 3sop_A 153 MTLEEK 158 (270)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 886543
No 209
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.41 E-value=1.6e-08 Score=109.71 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC------CCc-cccccc------------------------ceecCc-e--eEEEec
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS------DLF-SDARLF------------------------ATLDPR-L--KSVVLP 342 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~------~v~-~~~~~f------------------------~Tld~t-~--~~i~l~ 342 (597)
..+|+++|++|+||||+++.|.+. .+. +...++ .+.+|. . ..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999863 211 000000 111211 0 011111
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
.+.+++++||||.... ...+...... ...+..+|.+++|+|+..+. ... ..+..++-.. .....+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~-~~~l~~~l~~-i~~~~~~d~vllVvda~~g~--~~~----~~~~~~~~~~--~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE-EKGLLEEMKQ-IKEITNPDEIILVIDGTIGQ--QAG----IQAKAFKEAV--GEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSS-HHHHHHHHHH-TTSSSCCSEEEEEEEGGGGG--GHH----HHHHHHHTTS--CSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccc-cHHHHHHHHH-HHHHhcCcceeEEeeccccH--HHH----HHHHHHhhcc--cCCeEEEEeCC
Confidence 5678999999998542 1122222211 22334689999999987642 211 2223322100 01378999999
Q ss_pred CCCC
Q 007583 423 DYHD 426 (597)
Q Consensus 423 Dl~~ 426 (597)
|...
T Consensus 249 D~~~ 252 (432)
T 2v3c_C 249 DGSA 252 (432)
T ss_dssp SSCS
T ss_pred CCcc
Confidence 9754
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.41 E-value=4.5e-07 Score=92.75 Aligned_cols=59 Identities=27% Similarity=0.384 Sum_probs=38.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
...+|+++|++|+|||||+|+|+|... .+...+++|.+... +.+ +..+.++||||+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~--~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV--GKELELLDTPGILWP 178 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE--TTTEEEEECCCCCCS
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe--CCCEEEEECcCcCCC
Confidence 457999999999999999999999873 45555666655542 333 457899999999753
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=4.9e-07 Score=101.44 Aligned_cols=61 Identities=23% Similarity=0.191 Sum_probs=44.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe------cCCceEEEeecccccc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL------PSGRKVLLSDTVGFIS 357 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l------~~g~~i~LiDTpG~i~ 357 (597)
+..+|+|+|++|+|||||+|+|+|..... ...++|.+.+.+...+ ..+..+.++||||+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 56899999999999999999999987433 3333333444443332 2567899999999975
No 212
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.36 E-value=2.7e-07 Score=97.54 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=47.3
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCCh-------HHHHHHHHHHHHHcCC-CccCCCc
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL-------EEHRTTVLQVLQQVGV-SEEKLKN 414 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~-------~~~~~~v~~iL~~lgi-~~~~~~P 414 (597)
++..+.+|||+|+.+.- ......+..++++++|+|+++... ......+..++..+-- ......|
T Consensus 191 ~~~~l~iwDt~GQe~~r--------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSER--------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp TTEEEEEEEECCSGGGG--------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred CCeeEEEEeCCCchhhh--------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 46678899999984321 112234567999999999987321 1233444444444321 1223469
Q ss_pred EEEEEecCCCCC
Q 007583 415 MIEVWNKIDYHD 426 (597)
Q Consensus 415 ~IiVlNKiDl~~ 426 (597)
+|+|+||+|+..
T Consensus 263 iiLv~NK~DL~~ 274 (353)
T 1cip_A 263 IILFLNKKDLFE 274 (353)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEECcCchh
Confidence 999999999853
No 213
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.35 E-value=1.7e-06 Score=90.52 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=48.4
Q ss_pred CCceEEEeecccccccchhhHHHHHHH-hHHHHHhcCEEEEEEeCC-------CCChHHHHHHHHHHHHHc-CCCccCCC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCT-------APNLEEHRTTVLQVLQQV-GVSEEKLK 413 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aDliL~VvDas-------~~~~~~~~~~v~~iL~~l-gi~~~~~~ 413 (597)
++..+.+|||.|+ +.++. ....+..++++++|+|++ +.........+..+++.+ .-......
T Consensus 165 ~~v~l~iwDtgGQ---------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 165 QSVIFRMVDVGGQ---------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp TTEEEEEEEECCS---------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred eceeeEEEEcCCc---------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 4567889999999 44543 334567799999999775 222223333444444443 22222346
Q ss_pred cEEEEEecCCCCCc
Q 007583 414 NMIEVWNKIDYHDE 427 (597)
Q Consensus 414 P~IiVlNKiDl~~~ 427 (597)
|+|+|+||+|+...
T Consensus 236 ~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 236 SVILFLNKKDLLEE 249 (327)
T ss_dssp EEEEEEECHHHHHH
T ss_pred eEEEEEECchhhhh
Confidence 99999999998643
No 214
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.31 E-value=1.5e-06 Score=98.09 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCc-cccc-ccceec----------Cce---------------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDAR-LFATLD----------PRL--------------------------- 336 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~-~~~~-~f~Tld----------~t~--------------------------- 336 (597)
..|.|+|+|++|||||||+++|+|...+ ..+. .....+ ...
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~ 123 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN 123 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999997522 1110 000000 000
Q ss_pred ---------------eEEEecCCceEEEeeccccccc----chhhHHHHHHHhHHHH-Hh-cCEEEEEEeCCCCChHHHH
Q 007583 337 ---------------KSVVLPSGRKVLLSDTVGFISD----LPLQLVDAFHATLEEV-VE-ADLLVHVLDCTAPNLEEHR 395 (597)
Q Consensus 337 ---------------~~i~l~~g~~i~LiDTpG~i~~----lp~~lve~f~sTl~~l-~~-aDliL~VvDas~~~~~~~~ 395 (597)
-.+..+....+.++|.||+... ++......+...+..+ .. ..+++.++.+..... .
T Consensus 124 ~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a---~ 200 (608)
T 3szr_A 124 AIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA---T 200 (608)
T ss_dssp HHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT---T
T ss_pred HhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc---c
Confidence 0111122346889999997642 3333333444444443 22 356666666543222 1
Q ss_pred HHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 396 TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 396 ~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
..+..++..+.-. ..+.|+|+||+|++...
T Consensus 201 ~~~l~la~~v~~~---g~rtI~VlTK~Dlv~~g 230 (608)
T 3szr_A 201 TEALSMAQEVDPE---GDRTIGILTKPDLVDKG 230 (608)
T ss_dssp CHHHHHHHHHCSS---CCSEEEEEECGGGSSSS
T ss_pred HHHHHHHHHHhhc---CCceEEEecchhhcCcc
Confidence 2244555555322 13799999999998654
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.25 E-value=1.2e-06 Score=89.64 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=41.8
Q ss_pred chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 359 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 359 lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+|.++..+++.+.+.+..+|++++|+|+++|..... ..+.+++ + .+|.++|+||+|+++.
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l---~-----~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL---K-----NKPRIMLLNKADKADA 65 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC---S-----SSCEEEEEECGGGSCH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH---C-----CCCEEEEEECcccCCH
Confidence 344445678888999999999999999998754322 1233332 1 3599999999999763
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.13 E-value=1e-05 Score=87.77 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH------cCCCcc--cccc-cc------ee--cCceeEEEe-----------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALS------DSDLFS--DARL-FA------TL--DPRLKSVVL----------------- 341 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~------g~~v~~--~~~~-f~------Tl--d~t~~~i~l----------------- 341 (597)
...+|+++|++|+||||++..|+ |..+.. .+.. .+ +. ......+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998 333211 1100 00 00 000000000
Q ss_pred -cCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEe
Q 007583 342 -PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 342 -~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlN 420 (597)
..+.+++++||||...... .+..... .+..+..+|.+++|+|++.+ ......+..+-+.++ +..+|+|
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~-~lm~el~-~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~-------i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDK-ALIEEMK-QISNVIHPHEVILVIDGTIG--QQAYNQALAFKEATP-------IGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCH-HHHHHHH-HHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCT-------TEEEEEE
T ss_pred HhCCCCEEEEECCCcccchH-HHHHHHH-HHHHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCC-------CeEEEEE
Confidence 1346899999999754322 2222222 23445568999999999864 222222222222222 5679999
Q ss_pred cCCCCCc
Q 007583 421 KIDYHDE 427 (597)
Q Consensus 421 KiDl~~~ 427 (597)
|+|....
T Consensus 248 KlD~~~~ 254 (443)
T 3dm5_A 248 KLDGSAK 254 (443)
T ss_dssp CCSSCSS
T ss_pred CCCCccc
Confidence 9998654
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.93 E-value=6.3e-06 Score=83.33 Aligned_cols=57 Identities=28% Similarity=0.261 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC-cccccccceecCceeEEEecCCceEEEeeccccccc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGFISD 358 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v-~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~i~~ 358 (597)
.+++++|++|+|||||+|+|++... .....++.|.... .+. -+..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~--~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFS--LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEE--CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEE--eCCCEEEEECCCcccC
Confidence 5899999999999999999999774 3334444444332 222 2457899999999754
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.91 E-value=1.4e-05 Score=86.56 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH------cCCCcc-c-c---------------cccc---ee----cCc---eeEEEe-
Q 007583 296 GLATVAVVGYTNAGKSTLVSALS------DSDLFS-D-A---------------RLFA---TL----DPR---LKSVVL- 341 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~------g~~v~~-~-~---------------~~f~---Tl----d~t---~~~i~l- 341 (597)
...+|+++|++||||||++..|+ |..+.. . + .... +. +|. ...+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999998 332211 0 0 0000 00 000 000000
Q ss_pred -cCCceEEEeecccccc--cchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEE
Q 007583 342 -PSGRKVLLSDTVGFIS--DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEV 418 (597)
Q Consensus 342 -~~g~~i~LiDTpG~i~--~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiV 418 (597)
..+.+++++||||... ..+ .+...... +......|.+++|+|+..+ ......+..+-+.++ +..+|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~-~lm~el~~-i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-------~~gVI 244 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEET-KLLEEMKE-MYDVLKPDDVILVIDASIG--QKAYDLASRFHQASP-------IGSVI 244 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTT-HHHHHHHH-HHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-------SEEEE
T ss_pred HhcCCCEEEEECCCCccccCCH-HHHHHHHH-HHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccC-------CcEEE
Confidence 1356889999999754 322 23333333 2233457899999999764 122222222222333 57899
Q ss_pred EecCCCCC
Q 007583 419 WNKIDYHD 426 (597)
Q Consensus 419 lNKiDl~~ 426 (597)
+||+|...
T Consensus 245 lTKlD~~a 252 (433)
T 3kl4_A 245 ITKMDGTA 252 (433)
T ss_dssp EECGGGCS
T ss_pred Eecccccc
Confidence 99999764
No 219
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.87 E-value=5e-05 Score=79.66 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=46.5
Q ss_pred CCceEEEeecccccccchhhHHHHHHH-hHHHHHhcCEEEEEEeCCC-------CChHHHHHHHHHHHHHc-CCCccCCC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCTA-------PNLEEHRTTVLQVLQQV-GVSEEKLK 413 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aDliL~VvDas~-------~~~~~~~~~v~~iL~~l-gi~~~~~~ 413 (597)
++..+.+|||.|+ +.++. ....+..++++++|+|+++ .........+..++..+ .-......
T Consensus 159 ~~v~l~iwDtaGQ---------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 159 KDIPFHLIDVGGQ---------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp SSCEEEEEECCSC---------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred eeeeeccccCCCc---------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 4567899999999 44543 3445678999999999972 00112222233333332 11122345
Q ss_pred cEEEEEecCCCCC
Q 007583 414 NMIEVWNKIDYHD 426 (597)
Q Consensus 414 P~IiVlNKiDl~~ 426 (597)
|+|+|+||+|+..
T Consensus 230 piiLv~NK~DL~~ 242 (340)
T 4fid_A 230 VKLIFLNKMDLFE 242 (340)
T ss_dssp EEEEEEECHHHHH
T ss_pred eEEEEEECchhhh
Confidence 9999999999864
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.82 E-value=4.4e-05 Score=83.80 Aligned_cols=119 Identities=16% Similarity=0.252 Sum_probs=64.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC------Cccc-ccccce-----e-----cCceeEEEe-----------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD------LFSD-ARLFAT-----L-----DPRLKSVVL----------------- 341 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~------v~~~-~~~f~T-----l-----d~t~~~i~l----------------- 341 (597)
..-+++|+|++|||||||++.|+|.. +... ...+.. + ...+..+.-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 34689999999999999999998642 1111 111100 0 000111100
Q ss_pred -cCCceEEEeecccccccchhhHHHHHHHhHHHHH-----hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcE
Q 007583 342 -PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVV-----EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM 415 (597)
Q Consensus 342 -~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~-----~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~ 415 (597)
..+.+++++||+|...... .+..........+. ..+-+++|+|++.+ ......+..+-+.+++ .
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~-~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~i-------t 441 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKS-HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGL-------T 441 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHH-HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCC-------S
T ss_pred HhcCCCEEEEeCCCccchhh-hHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCC-------C
Confidence 1346788999999854321 22222222222221 24578889998765 2233333334444554 3
Q ss_pred EEEEecCCC
Q 007583 416 IEVWNKIDY 424 (597)
Q Consensus 416 IiVlNKiDl 424 (597)
.+|+||+|-
T Consensus 442 gvIlTKLD~ 450 (503)
T 2yhs_A 442 GITLTKLDG 450 (503)
T ss_dssp EEEEECGGG
T ss_pred EEEEEcCCC
Confidence 678999995
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.79 E-value=4.6e-05 Score=79.60 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=64.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccc-cccceecCc--------------ee--EEE------------------e
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDA-RLFATLDPR--------------LK--SVV------------------L 341 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~-~~f~Tld~t--------------~~--~i~------------------l 341 (597)
.-+++++|++|||||||++.|++....... ..+...+.. .+ .+. .
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 479999999999999999999864211000 000000100 00 000 0
Q ss_pred cCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEec
Q 007583 342 PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 421 (597)
Q Consensus 342 ~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNK 421 (597)
..+..++++||+|...... .+...+.. +......|-.++|+|+... ......+..+-+.+++ .++++||
T Consensus 209 ~~~~d~vliDtaG~~~~~~-~l~~eL~~-i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~i-------t~iilTK 277 (328)
T 3e70_C 209 ARGIDVVLIDTAGRSETNR-NLMDEMKK-IARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKI-------DGIILTK 277 (328)
T ss_dssp HHTCSEEEEEECCSCCTTT-CHHHHHHH-HHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCC-------CEEEEEC
T ss_pred hccchhhHHhhccchhHHH-HHHHHHHH-HHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCC-------CEEEEeC
Confidence 1234678899999854221 22222221 2233458889999998754 2333333333334453 4789999
Q ss_pred CCCC
Q 007583 422 IDYH 425 (597)
Q Consensus 422 iDl~ 425 (597)
.|-.
T Consensus 278 lD~~ 281 (328)
T 3e70_C 278 LDAD 281 (328)
T ss_dssp GGGC
T ss_pred cCCc
Confidence 9963
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.76 E-value=0.00013 Score=75.35 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.-+|+|+|++|||||||++.|++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 359999999999999999999853
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.71 E-value=3.9e-05 Score=79.02 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=43.6
Q ss_pred cccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 352 TVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 352 TpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+.|+|..+........+ ..+..+|.+++|+|++++. .......+...+...+ .|+|+|+||+|+.+..
T Consensus 58 ~~g~I~~i~er~~~l~r---~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~------~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 58 NTFAIEEVEERKNLLIR---PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFK------VEPVIVFNKIDLLNEE 126 (302)
T ss_dssp TEEEEEEECCCSCEEET---TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTT------CEEEEEECCGGGCCHH
T ss_pred CeEEEEeeCChHHHHhH---HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCC------CCEEEEEEcccCCCcc
Confidence 67777654332111111 2477899999999999874 3444444444455444 3899999999998653
No 224
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.69 E-value=4e-05 Score=81.07 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=46.3
Q ss_pred EEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHhcCEEEEEEeCCCCC-------hHHHHHHHHHHHHHc-CCC
Q 007583 338 SVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCTAPN-------LEEHRTTVLQVLQQV-GVS 408 (597)
Q Consensus 338 ~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aDliL~VvDas~~~-------~~~~~~~v~~iL~~l-gi~ 408 (597)
.+.+ ++..+.+|||+|+. .++. ....+..++++++|+|+++.+ .......+..++..+ ...
T Consensus 195 ~~~~-~~~~l~i~Dt~Gq~---------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 195 DFEI-KNVPFKMVDVGGQR---------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp EEEE-TTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred Eeee-CCeEEEEEeccchh---------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 3444 57889999999993 2322 233456799999999998721 012233333344433 111
Q ss_pred ccCCCcEEEEEecCCCCC
Q 007583 409 EEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 409 ~~~~~P~IiVlNKiDl~~ 426 (597)
.....|+|+|+||+|+..
T Consensus 265 ~~~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLLE 282 (362)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred hhCCCCEEEEEEChhhhh
Confidence 223469999999999853
No 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.65 E-value=6.4e-05 Score=79.62 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHhHHHH-HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 365 DAFHATLEEV-VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 365 e~f~sTl~~l-~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+.|.+++.++ ..++++++|+|++++.. .....+.+ .++ .+|+++|+||+|+.+.
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~-s~~~~l~~---~l~-----~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNG-SFIPGLPR---FAA-----DNPILLVGNKADLLPR 113 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGG-GCCSSHHH---HCT-----TSCEEEEEECGGGSCT
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCC-chhhHHHH---HhC-----CCCEEEEEEChhcCCC
Confidence 4677778777 67889999999998732 11111111 222 3599999999999764
No 226
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.62 E-value=0.00015 Score=78.80 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=41.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC---------------CCcccccccceecCceeEEEec---------CC--ceEEE
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS---------------DLFSDARLFATLDPRLKSVVLP---------SG--RKVLL 349 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~---------------~v~~~~~~f~Tld~t~~~i~l~---------~g--~~i~L 349 (597)
.+.+|+|+|.+++|||||||+|+|. ....-. ...|+.+.+..+... ++ ..+++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 5789999999999999999999974 111111 112445544444432 22 46899
Q ss_pred eecccccc
Q 007583 350 SDTVGFIS 357 (597)
Q Consensus 350 iDTpG~i~ 357 (597)
+||+|+..
T Consensus 145 lDTeG~~~ 152 (447)
T 3q5d_A 145 MDTQGTFD 152 (447)
T ss_dssp EEEECCCS
T ss_pred EcCCcccc
Confidence 99999854
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.61 E-value=0.0002 Score=73.66 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=64.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc------CCCcccc-ccc--ce------------e---------cCce---eEEE-ec
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD------SDLFSDA-RLF--AT------------L---------DPRL---KSVV-LP 342 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g------~~v~~~~-~~f--~T------------l---------d~t~---~~i~-l~ 342 (597)
..+++++|++|+||||++..|.+ ..+...+ .++ .+ + +|.. ..+. ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999983 2221100 000 00 0 0000 0000 01
Q ss_pred -CCceEEEeeccccccc-chhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEe
Q 007583 343 -SGRKVLLSDTVGFISD-LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 343 -~g~~i~LiDTpG~i~~-lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlN 420 (597)
.+.+++++||||.... ....+..... .+..+..+|.+++|+|+..+ ......+. .+.. .+ ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~-~i~~~~~~d~vllVvda~~g--~~~~~~~~-~~~~-~~-----~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMK-NIYEAIKPDEVTLVIDASIG--QKAYDLAS-KFNQ-AS-----KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHH-HHHHHHCCSEEEEEEEGGGG--GGHHHHHH-HHHH-TC-----TTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHH-HHHHHhcCCEEEEEeeCCch--HHHHHHHH-HHHh-hC-----CCCEEEEe
Confidence 4568999999998541 1111221111 12345578999999998643 22222222 2222 12 12788999
Q ss_pred cCCCCC
Q 007583 421 KIDYHD 426 (597)
Q Consensus 421 KiDl~~ 426 (597)
|+|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999753
No 228
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.56 E-value=0.00011 Score=75.33 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=43.7
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
+..+.+||| +.+. ..+ +...+..+|++++|+|++++. .......+...++..+ .|+|+|+||+
T Consensus 62 ~~~~~iwD~--qer~--~~l------~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~------~piilv~NK~ 125 (301)
T 1u0l_A 62 TGSGVIENV--LHRK--NLL------TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE------LETVMVINKM 125 (301)
T ss_dssp SSSEEEEEE--CCCS--CEE------TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT------CEEEEEECCG
T ss_pred CCeEEEEEE--cccc--cee------eccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCC------CCEEEEEeHH
Confidence 347889999 3211 111 112467899999999999875 3444444444444433 4899999999
Q ss_pred CCCCc
Q 007583 423 DYHDE 427 (597)
Q Consensus 423 Dl~~~ 427 (597)
|+.+.
T Consensus 126 DL~~~ 130 (301)
T 1u0l_A 126 DLYDE 130 (301)
T ss_dssp GGCCH
T ss_pred HcCCc
Confidence 98653
No 229
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.55 E-value=0.00012 Score=77.56 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHHhHHHHHh-cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCc
Q 007583 365 DAFHATLEEVVE-ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 427 (597)
Q Consensus 365 e~f~sTl~~l~~-aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~ 427 (597)
+.|.+++.++.. +|++++|+|++++ . ..+...|.++- ..+|+++|+||+|+.+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~--~---~~~~~~l~~~~----~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDF--N---GSWLPGLHRFV----GNNKVLLVGNKADLIPK 111 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSH--H---HHCCTTHHHHS----SSSCEEEEEECGGGSCT
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCC--c---ccHHHHHHHHh----CCCcEEEEEEChhcCCc
Confidence 567777777664 5599999999874 1 22222333321 13599999999999754
No 230
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.55 E-value=0.00017 Score=74.57 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCCCccc-ccccceecC----------------ceeEEE------------------
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATLDP----------------RLKSVV------------------ 340 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~v~~~-~~~f~Tld~----------------t~~~i~------------------ 340 (597)
...+|+++|++|+||||++..|++...... .......|+ ....+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 346899999999999999999985321000 000000000 000000
Q ss_pred ecCCceEEEeecccccccchhhHHHHHHHhHHHH-----HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcE
Q 007583 341 LPSGRKVLLSDTVGFISDLPLQLVDAFHATLEEV-----VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM 415 (597)
Q Consensus 341 l~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l-----~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~ 415 (597)
...+.+++++||||... ....+.+.+......+ ..+|.+++|+|+..+ ......+....+..++ .
T Consensus 183 ~~~~~dvvIiDtpg~~~-~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i-------~ 252 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLH-TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNV-------T 252 (306)
T ss_dssp HHTTCSEEEEEECCCCS-CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCC-------C
T ss_pred HhcCCCEEEEECCCchh-hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCC-------C
Confidence 11345789999999632 2222333332222222 137888999998632 2333334344444443 4
Q ss_pred EEEEecCCCC
Q 007583 416 IEVWNKIDYH 425 (597)
Q Consensus 416 IiVlNKiDl~ 425 (597)
-+|+||+|-.
T Consensus 253 gvVlTk~D~~ 262 (306)
T 1vma_A 253 GIILTKLDGT 262 (306)
T ss_dssp EEEEECGGGC
T ss_pred EEEEeCCCCc
Confidence 5788999964
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.51 E-value=1.6e-05 Score=80.32 Aligned_cols=58 Identities=26% Similarity=0.222 Sum_probs=39.4
Q ss_pred hhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 360 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 360 p~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
|.++..+++.+...+..+|++++|+|+++|...... .+. ++ .+|.|+|+||+|+++..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~l~-ll---------~k~~iivlNK~DL~~~~ 62 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-GVD-FS---------RKETIILLNKVDIADEK 62 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-TSC-CT---------TSEEEEEEECGGGSCHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-HHH-hc---------CCCcEEEEECccCCCHH
Confidence 344445677888899999999999999987433211 111 11 35999999999998753
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.47 E-value=0.00037 Score=75.39 Aligned_cols=120 Identities=20% Similarity=0.192 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH-------cCCCcc--cc-ccccee---------------------cCce--e-EE-E
Q 007583 296 GLATVAVVGYTNAGKSTLVSALS-------DSDLFS--DA-RLFATL---------------------DPRL--K-SV-V 340 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~-------g~~v~~--~~-~~f~Tl---------------------d~t~--~-~i-~ 340 (597)
+..+|+++|.+|+||||+...|+ |..+.. .+ +..... +|.. . .+ .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998 544311 01 000000 0000 0 00 0
Q ss_pred ec-CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q 007583 341 LP-SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVW 419 (597)
Q Consensus 341 l~-~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVl 419 (597)
.. .+.+++++||||..... ..+..... ....+..+|.+++|+|+..+. .....+...-..+++ .-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~-~~l~~~L~-~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~i-------~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD-EAMMDEIK-QVHASINPVETLFVVDAMTGQ--DAANTAKAFNEALPL-------TGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC-HHHHHHHH-HHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHHSCC-------CCEEE
T ss_pred HHhCCCCEEEEECCCccccc-HHHHHHHH-HHHHhhcCcceeEEeecchhH--HHHHHHHHHhccCCC-------eEEEE
Confidence 01 45689999999975421 12222221 223355789999999997652 222222222122332 34699
Q ss_pred ecCCCCC
Q 007583 420 NKIDYHD 426 (597)
Q Consensus 420 NKiDl~~ 426 (597)
||+|...
T Consensus 248 nK~D~~~ 254 (433)
T 2xxa_A 248 TKVDGDA 254 (433)
T ss_dssp ECTTSSS
T ss_pred ecCCCCc
Confidence 9999753
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.37 E-value=0.00054 Score=71.18 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...+|+++|++|+||||++..|.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 234
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.32 E-value=0.00015 Score=71.87 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-.++|+|++|||||||++.|+|.. .|+.+.+.+ +|.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~-----------~p~~G~I~~-~g~~ 68 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD-----------KPTEGEVYI-DNIK 68 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-----------CCCceEEEE-CCEE
Confidence 589999999999999999999976 566777776 5543
No 235
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.32 E-value=0.00023 Score=73.59 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
.+++++|+|++|||||||+|.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999763
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.30 E-value=8e-05 Score=76.57 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..+|+++|++|+||||++..|++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999999975
No 237
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.26 E-value=0.00019 Score=70.59 Aligned_cols=37 Identities=35% Similarity=0.523 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+ +|.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~-~g~~ 67 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD-----------APTEGKVFL-EGKE 67 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS-----------CCSEEEEEE-TTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEE-CCEE
Confidence 489999999999999999999976 455666666 4443
No 238
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.24 E-value=0.00024 Score=70.75 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+ +|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~-~g~ 60 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV-----------KPDRGEVRL-NGA 60 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS-----------CCSEEEEEE-TTE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEE-CCE
Confidence 589999999999999999999975 455666666 443
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.23 E-value=0.00086 Score=72.34 Aligned_cols=119 Identities=23% Similarity=0.188 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC------Ccc--ccc-ccc------eec--CceeEEE-----------------e
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD------LFS--DAR-LFA------TLD--PRLKSVV-----------------L 341 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~------v~~--~~~-~f~------Tld--~t~~~i~-----------------l 341 (597)
...+|+++|++|+||||++..|.+.. +.. .+. ..+ +.. .....+. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999997431 110 000 000 000 0000000 0
Q ss_pred -cCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEe
Q 007583 342 -PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 342 -~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlN 420 (597)
..+.+++++||||..... ..+..... .+..+..+|.+++|+|+..+ ......+...-..++ ..-+|+|
T Consensus 177 ~~~~~DvVIIDTaG~l~~d-~~l~~el~-~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~-------i~GVIlT 245 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQID-EPLMGELA-RLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVG-------VTGLVLT 245 (425)
T ss_dssp HHTTCSEEEEECCCCSSCC-HHHHHHHH-HHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTC-------CCEEEEE
T ss_pred HHCCCCEEEEcCCCccccc-HHHHHHHH-HhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCC-------ceEEEEe
Confidence 145678999999975432 12222221 22334468999999998754 222233322222333 2467899
Q ss_pred cCCCC
Q 007583 421 KIDYH 425 (597)
Q Consensus 421 KiDl~ 425 (597)
|+|..
T Consensus 246 KlD~~ 250 (425)
T 2ffh_A 246 KLDGD 250 (425)
T ss_dssp SGGGC
T ss_pred CcCCc
Confidence 99964
No 240
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.22 E-value=0.00023 Score=72.44 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV 347 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i 347 (597)
-+++|+|++|||||||++.|+|.. .|+.+.+.+ +|.++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~-----------~p~~G~I~~-~G~~i 72 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL-----------KPSSGRILF-DNKPI 72 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-----------CCCCeEEEE-CCEEC
Confidence 489999999999999999999976 456677776 55544
No 241
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.20 E-value=0.00025 Score=71.56 Aligned_cols=37 Identities=19% Similarity=0.533 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+ +|..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~-----------~p~~G~i~~-~g~~ 69 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE-----------KPSEGAIIV-NGQN 69 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEE-CCEE
Confidence 489999999999999999999975 455666666 4543
No 242
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.20 E-value=0.00024 Score=71.29 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+ +|.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~-----------~p~~G~i~~-~g~~ 70 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL-----------KADEGRVYF-ENKD 70 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEE-CCEE
Confidence 489999999999999999999976 455666766 5543
No 243
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.19 E-value=0.00026 Score=70.33 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+ +|.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~-~g~ 68 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV-----------RAQKGKIIF-NGQ 68 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEE-CCE
Confidence 489999999999999999999975 455666666 443
No 244
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.18 E-value=0.00022 Score=72.16 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999999976
No 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.17 E-value=0.00038 Score=73.44 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL 322 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v 322 (597)
-+++|+|++|||||||+|+|+|...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4899999999999999999999764
No 246
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.15 E-value=0.00029 Score=71.21 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+++|+|++|||||||++.|+|.. .|+.+.+.+ +|.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~-~g~~ 87 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE-----------DFDEGEIII-DGIN 87 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC-----------CCCCcEEEE-CCEE
Confidence 589999999999999999999975 455666666 4543
No 247
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.14 E-value=0.00029 Score=70.44 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-+++|+|++|||||||++.|+|.. .|+.+.+.+ +|.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~I~i-~g~ 71 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY-----------IPENGQVLI-DGH 71 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEE-CCE
Confidence 489999999999999999999976 455666666 443
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.14 E-value=0.0014 Score=67.16 Aligned_cols=120 Identities=23% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC------Ccccc-ccc--c------ee-c-CceeEEE-----------------e
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD------LFSDA-RLF--A------TL-D-PRLKSVV-----------------L 341 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~------v~~~~-~~f--~------Tl-d-~t~~~i~-----------------l 341 (597)
...+++++|++|+||||++..|++.. +...+ ..+ . +. . .....+. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998532 11000 000 0 00 0 0000010 0
Q ss_pred -cCCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEe
Q 007583 342 -PSGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 420 (597)
Q Consensus 342 -~~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlN 420 (597)
..+.+++++||||.....+ ......... .....+|.+++|+|+... ......+......++ ..-+|+|
T Consensus 177 ~~~~~D~viiDtpp~~~~d~-~~~~~l~~~-~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~-------i~givln 245 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDE-PLMGELARL-KEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVG-------VTGLVLT 245 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCH-HHHHHHHHH-HHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-------CCEEEEE
T ss_pred HhCCCCEEEEeCCCCccccH-HHHHHHHHH-hhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCC-------CCEEEEE
Confidence 1346789999998754322 222222222 223358888999997643 333333333222333 2457899
Q ss_pred cCCCCC
Q 007583 421 KIDYHD 426 (597)
Q Consensus 421 KiDl~~ 426 (597)
|+|...
T Consensus 246 k~d~~~ 251 (295)
T 1ls1_A 246 KLDGDA 251 (295)
T ss_dssp CGGGCS
T ss_pred CCCCCc
Confidence 999643
No 249
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00028 Score=69.15 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+ +|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~-~g~ 71 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL-----------KPLKGEIIY-NGV 71 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeEEEE-CCE
Confidence 479999999999999999999975 455666666 443
No 250
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.11 E-value=0.00044 Score=71.06 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
.+++++|++|||||||+|+|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 489999999999999999999 65
No 251
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.10 E-value=0.00033 Score=70.50 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL 341 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l 341 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~ 74 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI-----------KPSSGIVTV 74 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEE
Confidence 489999999999999999999975 455566665
No 252
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.09 E-value=0.00036 Score=71.04 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV 347 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i 347 (597)
-+++|+|++|||||||++.|+|.. .|+.+.+.+ +|..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~-----------~p~~G~I~~-~g~~~ 85 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE-----------PATSGTVNL-FGKMP 85 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTBCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC-----------CCCCeEEEE-CCEEc
Confidence 489999999999999999999976 466677776 55443
No 253
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.08 E-value=0.00036 Score=70.72 Aligned_cols=36 Identities=33% Similarity=0.465 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+ +|.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~-----------~p~~G~I~~-~g~ 81 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY-----------QPTGGKVLL-DGE 81 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------CCCCCEEEE-CCE
Confidence 489999999999999999999976 455566665 443
No 254
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.07 E-value=0.00029 Score=70.12 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999975
No 255
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.07 E-value=0.0004 Score=70.12 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+ +|..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~-----------~p~~G~I~~-~g~~ 70 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI-----------EPTSGDVLY-DGER 70 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEE-TTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC-----------CCCCcEEEE-CCEE
Confidence 489999999999999999999975 455666766 4443
No 256
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.06 E-value=0.00038 Score=69.73 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+++|+|++|||||||++.|+|.. .|. +.+.+ +|.+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~-----------~p~-G~i~~-~g~~ 62 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT-----------SGK-GSIQF-AGQP 62 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-----------CCE-EEEEE-TTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC-----------CCC-eEEEE-CCEE
Confidence 489999999999999999999976 456 67766 4543
No 257
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.05 E-value=0.00016 Score=74.78 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
.+++|+|++|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 489999999999999999999865
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.05 E-value=0.00062 Score=67.09 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL 341 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l 341 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~ 67 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL-----------EPSEGKIKH 67 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS-----------CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------cCCccEEEE
Confidence 489999999999999999999976 456666666
No 259
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.02 E-value=0.00047 Score=68.93 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
-+++|+|++|||||||++.|+|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999996
No 260
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.02 E-value=0.00049 Score=72.79 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||+++|+|..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 589999999999999999999976
No 261
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.00 E-value=0.00054 Score=72.35 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 489999999999999999999976
No 262
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.99 E-value=0.00047 Score=68.40 Aligned_cols=33 Identities=45% Similarity=0.471 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL 341 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l 341 (597)
-+++|+|++|||||||++.|+|.. .|..+.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~I~~ 64 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM-----------DKVEGHVAI 64 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS-----------EEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEE
Confidence 489999999999999999999976 455566665
No 263
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.95 E-value=0.00044 Score=70.93 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL 322 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v 322 (597)
.+++++|++|||||||+|+|+|...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4899999999999999999999763
No 264
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.93 E-value=0.00037 Score=72.03 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 589999999999999999999976
No 265
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.91 E-value=0.00069 Score=72.08 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 489999999999999999999976
No 266
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.90 E-value=0.00065 Score=68.62 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
-+++|+|++|||||||++.|+|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999996
No 267
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.89 E-value=0.00074 Score=71.20 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999976
No 268
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.88 E-value=0.00082 Score=71.29 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 489999999999999999999976
No 269
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.88 E-value=0.00076 Score=71.23 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 489999999999999999999975
No 270
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.88 E-value=0.0033 Score=66.32 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.-+|+|+|++|||||||++.|+|.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 468999999999999999999864
No 271
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.87 E-value=0.00079 Score=71.18 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 489999999999999999999976
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.85 E-value=0.00041 Score=67.24 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC--cccccccceecCceeEEEecCCceEEEeecccc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL--FSDARLFATLDPRLKSVVLPSGRKVLLSDTVGF 355 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v--~~~~~~f~Tld~t~~~i~l~~g~~i~LiDTpG~ 355 (597)
...|+|+|++|||||||+++|++... .......+|-.|..+. . +|..+.++|+..|
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~-~G~~y~fvs~~~f 76 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--E-DGKEYHFISTEEM 76 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--C-TTSSCEECCHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--e-ccccceeccHHHh
Confidence 36899999999999999999997542 1122223333343332 2 6777778877666
No 273
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.83 E-value=0.00089 Score=71.04 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 489999999999999999999976
No 274
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.79 E-value=0.00089 Score=67.36 Aligned_cols=24 Identities=42% Similarity=0.440 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999999965
No 275
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.76 E-value=0.00074 Score=71.02 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 489999999999999999999976
No 276
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.75 E-value=0.0006 Score=65.53 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||+++|+|..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999964
No 277
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.75 E-value=0.00068 Score=71.40 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999976
No 278
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.67 E-value=0.001 Score=68.05 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999999975
No 279
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.67 E-value=0.00078 Score=63.83 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
+++|+|++|||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999864
No 280
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.67 E-value=0.0012 Score=66.21 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999976
No 281
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.59 E-value=0.00095 Score=63.24 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|||||||++.|++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999863
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.56 E-value=0.001 Score=61.93 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999999965
No 283
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.55 E-value=0.00096 Score=63.93 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..++|+|++|||||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999985
No 284
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.55 E-value=0.0057 Score=59.96 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=31.3
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc-cCCCcEEEEEecC-CCC
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE-EKLKNMIEVWNKI-DYH 425 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~-~~~~P~IiVlNKi-Dl~ 425 (597)
.+..+|.+|||||+++....+..+.+.++..-+.-.. ....|++++.||. |+.
T Consensus 122 Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 122 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp HHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred HhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 4567999999999987643233333322222222111 2346999999996 664
No 285
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0012 Score=62.17 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999854
No 286
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.50 E-value=0.0019 Score=69.25 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=49.5
Q ss_pred EEEecCCceEEEeecccccccchhhHHHHHHH-hHHHHHhcCEEEEEEeCCCC-------ChHHHHHHHHHHHHHcCC-C
Q 007583 338 SVVLPSGRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCTAP-------NLEEHRTTVLQVLQQVGV-S 408 (597)
Q Consensus 338 ~i~l~~g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aDliL~VvDas~~-------~~~~~~~~v~~iL~~lgi-~ 408 (597)
.+.+ ++..+.+|||+|+.+ |+. ....+..++++++|+|+++- ........+..++..+-- .
T Consensus 211 ~~~~-~~v~l~iwDtaGQe~---------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 211 KFQV-DKVNFHMFDVGGQRD---------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp EEEE-TTEEEEEEEECCSGG---------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred Eeec-CCccceecccchhhh---------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 3444 567889999999943 222 23345679999999999870 011233344444444321 1
Q ss_pred ccCCCcEEEEEecCCCCC
Q 007583 409 EEKLKNMIEVWNKIDYHD 426 (597)
Q Consensus 409 ~~~~~P~IiVlNKiDl~~ 426 (597)
.....|+|+|+||+|+..
T Consensus 281 ~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 281 WLRTISVILFLNKQDLLA 298 (402)
T ss_dssp TCSSCCEEEEEECHHHHH
T ss_pred cCCCCeEEEEEEChhhhh
Confidence 223469999999999854
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.48 E-value=0.00098 Score=62.93 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|||||||++.|++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999864
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.44 E-value=0.0011 Score=64.47 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
-+++|+|++|||||||++.|+|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999997
No 289
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.40 E-value=0.0012 Score=64.37 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|||||||++.|+|..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999954
No 290
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.40 E-value=0.0081 Score=56.65 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=46.7
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCC
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 423 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiD 423 (597)
..+++++|||+.... .+...+..+|.+++|+..+.. . .....+.+.++.++... ...++.+|+||+|
T Consensus 75 ~yD~viiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~-~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV----------ITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYS-RKVEARFLITRKI 141 (206)
T ss_dssp TSSEEEEECCSSSSH----------HHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGG-GCCEEEEEECSBC
T ss_pred CCCEEEEECCCCCCH----------HHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhC-CCCcEEEEEeccC
Confidence 468899999987421 123345569999999987765 4 56666777777765322 2236789999998
Q ss_pred C
Q 007583 424 Y 424 (597)
Q Consensus 424 l 424 (597)
.
T Consensus 142 ~ 142 (206)
T 4dzz_A 142 E 142 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 291
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.37 E-value=0.0015 Score=63.97 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|||||||+++|+|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 689999999999999999999965
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.35 E-value=0.0018 Score=60.61 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..++|+|++|||||||++.|++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999985
No 293
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.34 E-value=0.0018 Score=62.22 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..+|+|+|++|||||||++.|.+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999999854
No 294
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.00074 Score=63.77 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|||||||++.|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999864
No 295
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.27 E-value=0.0027 Score=67.75 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|+|..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 489999999999999999999965
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.26 E-value=0.0019 Score=60.26 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
-.++|+|++|||||||++.+.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5899999999999999998654
No 297
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.24 E-value=0.0027 Score=70.99 Aligned_cols=38 Identities=37% Similarity=0.491 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCceE
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRKV 347 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~i 347 (597)
-.++|+|++|||||||++.|+|.. +|+.+.+.+ +|.++
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~-----------~p~~G~i~~-~g~~~ 407 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY-----------DVDSGSICL-DGHDV 407 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------CCCCCEEEE-CCEEh
Confidence 489999999999999999999976 455666666 55443
No 298
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.24 E-value=0.0027 Score=71.04 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-.++|+|++|||||||++.|+|.. +|+.+.+.+ +|.+
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~-----------~p~~G~i~~-~g~~ 406 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY-----------DIDEGHILM-DGHD 406 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT-----------CCSEEEEEE-TTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc-----------CCCCCeEEE-CCEE
Confidence 389999999999999999999976 556666666 5543
No 299
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.18 E-value=0.0025 Score=71.42 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-.++|+|++|||||||++.|+|.. +|+.+.+.+ +|.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~-----------~p~~G~i~~-~g~ 406 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY-----------DPASGTISL-DGH 406 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS-----------CCSEEEEEE-TTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc-----------CCCCcEEEE-CCE
Confidence 379999999999999999999976 456666666 443
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.18 E-value=0.0024 Score=60.96 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+|+|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999985
No 301
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.16 E-value=0.0023 Score=64.57 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999964
No 302
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.15 E-value=0.0029 Score=71.07 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-.++|+|++|||||||++.|+|.. +|+.+.+.+ +|.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~-----------~p~~G~i~~-~g~ 417 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY-----------DVDRGQILV-DGI 417 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS-----------CCSEEEEEE-TTE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc-----------CCCCeEEEE-CCE
Confidence 489999999999999999999976 455566665 443
No 303
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.09 E-value=0.0024 Score=71.43 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-.++|+|++|||||||++.|+|.. +|+.+.+.+ +|.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~-----------~p~~G~i~~-~g~ 403 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY-----------DVTSGQILI-DGH 403 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS-----------CCSEEEEEE-TTE
T ss_pred CEEEEECCCCChHHHHHHHHhcCC-----------CCCCcEEEE-CCE
Confidence 489999999999999999999976 455666666 443
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.08 E-value=0.0026 Score=64.02 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|+||||||||+++|+|..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 589999999999999999999853
No 305
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.97 E-value=0.0033 Score=70.39 Aligned_cols=36 Identities=36% Similarity=0.422 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGR 345 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~ 345 (597)
-.++|+|++|||||||++.|+|.. +|+.+.+.+ +|.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~-----------~~~~G~i~i-~g~ 405 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI-----------DPERGRVEV-DEL 405 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS-----------CCSEEEEEE-SSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc-----------cCCCcEEEE-CCE
Confidence 489999999999999999999976 455566665 443
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.96 E-value=0.0033 Score=58.98 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..++|+|++|||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.95 E-value=0.0039 Score=59.95 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..|+|+|++|||||||++.|++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999999865
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.90 E-value=0.0026 Score=61.98 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-cCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALS-DSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~-g~~ 321 (597)
..++|+|++|||||||++.|+ +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999999 864
No 309
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.89 E-value=0.0043 Score=65.28 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||+++|++..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 489999999999999999999965
No 310
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.87 E-value=0.0035 Score=60.11 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|++|||||||++.|++..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999843
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.87 E-value=0.0035 Score=64.67 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
-+++|+|++|||||||++.|+|.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 58999999999999999999975
No 312
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.86 E-value=0.0032 Score=60.25 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
+++|+|++|||||||++.|+|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999999854
No 313
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.83 E-value=0.0037 Score=65.02 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|+||||||||+++|+|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999965
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.78 E-value=0.0051 Score=58.08 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999999865
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.78 E-value=0.0047 Score=58.76 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|+|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999874
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.78 E-value=0.0047 Score=60.01 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~ 318 (597)
-.++|+|++|||||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.77 E-value=0.0053 Score=60.39 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH---cCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALS---DSD 321 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~---g~~ 321 (597)
...|+|+|++|||||||++.|+ |..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3689999999999999999999 764
No 318
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.14 Score=55.37 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...-|.|.||||+|||+|.+++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999985
No 319
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.74 E-value=0.021 Score=60.19 Aligned_cols=48 Identities=29% Similarity=0.305 Sum_probs=29.6
Q ss_pred HHhcCEEEEEEeCCCCChHH-HHHHHHHHHHHcCCCccCCCcEEEEEecCCCCCcc
Q 007583 374 VVEADLLVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 428 (597)
Q Consensus 374 l~~aDliL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~~~~ 428 (597)
+.++|.+++| |+..|.... ..+..+-..+..++ |.|+|+||+|+.++.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~------~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQV------EPLIVLNKIDLLDDE 176 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTC------EEEEEEECGGGCCHH
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCC------CEEEEEECccCCCch
Confidence 4678988866 555553322 22223222344554 779999999998764
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.71 E-value=0.0054 Score=63.33 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...+|+|+|++|||||||++.|.|..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34799999999999999999999854
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.67 E-value=0.0059 Score=60.16 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.+|+|+|++|||||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999884
No 322
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.67 E-value=0.0043 Score=57.04 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..|+|+|++|||||||.+.|.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998853
No 323
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.67 E-value=0.0032 Score=66.32 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=44.3
Q ss_pred CceEEEeecccccccchhhHHHHHHH-hHHHHHhcCEEEEEEeCCC-------CChHHHHHHHHHHHHHcC-CCccCCCc
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCTA-------PNLEEHRTTVLQVLQQVG-VSEEKLKN 414 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~s-Tl~~l~~aDliL~VvDas~-------~~~~~~~~~v~~iL~~lg-i~~~~~~P 414 (597)
...+.+|||+|+.+ ++. ....+..++++++|+|+++ .........+..+++.+- .......|
T Consensus 182 ~v~l~iwDtaGQe~---------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN---------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCSTT---------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCchh---------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 35788999999843 221 2234567999999999871 111223334444444432 11223469
Q ss_pred EEEEEecCCCCC
Q 007583 415 MIEVWNKIDYHD 426 (597)
Q Consensus 415 ~IiVlNKiDl~~ 426 (597)
+|+|+||+|+..
T Consensus 253 iiLvgNK~DL~~ 264 (354)
T 2xtz_A 253 FMLFLNKFDIFE 264 (354)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEECcchhh
Confidence 999999999854
No 324
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.0079 Score=66.76 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999975
No 325
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.59 E-value=0.017 Score=59.24 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.5
Q ss_pred EEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 540 DVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 540 vv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
|.++||+||.|+.+=|+-|.+.+..
T Consensus 284 Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 284 VQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEecccCCCcCHHHHHHHHHHHHHh
Confidence 8999999999999998888776643
No 326
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.54 E-value=0.0071 Score=57.51 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...|+|+|++|||||||.+.|.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998753
No 327
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.0059 Score=67.80 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL 322 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v 322 (597)
-+++|+|+||||||||++.|+|...
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5899999999999999999999653
No 328
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.49 E-value=0.0069 Score=57.26 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+.++|+|++|||||||+++|.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3589999999999999999999874
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.48 E-value=0.1 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++||||||+.+.|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 330
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.47 E-value=0.02 Score=59.34 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+|+|+|++|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999875
No 331
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.13 Score=55.49 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..-|.|.||||+|||+|.+++++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999974
No 332
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.45 E-value=0.0087 Score=55.25 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++|||||||.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 368999999999999999999863
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.43 E-value=0.0067 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+|+|++|||||||+++|.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38899999999999999999764
No 334
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.42 E-value=0.007 Score=67.14 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL 322 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v 322 (597)
-+++|+|+||||||||++.|+|...
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999999653
No 335
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.41 E-value=0.0065 Score=63.95 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.|+|+|+||||||||+++|+|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999998753
No 336
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.36 E-value=0.01 Score=64.37 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEE-------ecCC-ceEEEeecccccc--cchhhHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVV-------LPSG-RKVLLSDTVGFIS--DLPLQLVDA 366 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~-------l~~g-~~i~LiDTpG~i~--~lp~~lve~ 366 (597)
...|.++|.+||||||+.+.|..... ..+. ++. .+. ..++ ....++|+.|... .........
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~----~~~~---~t~-~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~ 110 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN----FIGV---PTR-EFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAA 110 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH----HTTC---CEE-EEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh----ccCC---Cce-EEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999986420 0000 000 000 0011 1223566665410 000000111
Q ss_pred HHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC
Q 007583 367 FHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV 407 (597)
Q Consensus 367 f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi 407 (597)
+......+..++..++|+|++.. .......+.+.+.+.+.
T Consensus 111 l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~ 150 (469)
T 1bif_A 111 LNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGY 150 (469)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCC
Confidence 11112333346777889999886 55666677777777664
No 337
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.29 E-value=0.0077 Score=61.86 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.-+++++|++|||||||++.|+|.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999864
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.27 E-value=0.0085 Score=57.60 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.+|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 339
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.26 E-value=0.01 Score=56.43 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
.+|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 340
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.25 E-value=0.0069 Score=74.12 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+|||||++|||||||++.|.+.. +|+.+.+.+ +|.+
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~-----------~p~~G~I~i-DG~d 1142 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY-----------DTLGGEIFI-DGSE 1142 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS-----------CCSSSEEEE-TTEE
T ss_pred CEEEEECCCCChHHHHHHHHhcCc-----------cCCCCEEEE-CCEE
Confidence 379999999999999999999976 566667766 5543
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.25 E-value=0.0067 Score=63.57 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|||||||++.|+|..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999965
No 342
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.21 E-value=0.17 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+.|.|++|+|||||+++|.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999874
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.18 E-value=0.01 Score=60.89 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999985
No 344
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.0092 Score=67.17 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL 322 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v 322 (597)
-+++|+|+||||||||++.|+|...
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 4899999999999999999999753
No 345
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.14 E-value=0.0087 Score=63.23 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.|+|+|+||||||||+++|++..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999999853
No 346
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.08 E-value=0.011 Score=53.49 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSAL 317 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL 317 (597)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 347
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.08 E-value=0.013 Score=58.19 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~ 318 (597)
.+|+|+|++|||||||++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999999
No 348
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.07 E-value=0.024 Score=57.18 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCC
Q 007583 300 VAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 300 VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
++|+|++|+|||||+++|++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999854
No 349
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.06 E-value=0.0087 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|+|||||+++|.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998853
No 350
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.06 E-value=0.011 Score=65.28 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
.++|+|+||||||||+++|++..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999999864
No 351
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.04 E-value=0.013 Score=69.30 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL 341 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l 341 (597)
-+++|+|++|||||||++.|+|.. .|+.+.+.+
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll-----------~P~sG~I~~ 732 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGEL-----------LPTSGEVYT 732 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSS-----------CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEE
Confidence 489999999999999999999976 456677766
No 352
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.03 E-value=0.01 Score=56.14 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999998
No 353
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.01 E-value=0.01 Score=63.87 Aligned_cols=24 Identities=33% Similarity=0.263 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-.++|+|+||||||||+++|++..
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999999853
No 354
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.01 E-value=0.01 Score=64.96 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
-+++|+|++|||||||+++|+|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999974
No 355
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.99 E-value=0.29 Score=49.06 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=41.8
Q ss_pred ceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEE-EEEecCC
Q 007583 345 RKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI-EVWNKID 423 (597)
Q Consensus 345 ~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~I-iVlNKiD 423 (597)
.+++++|||+..... + +......+|.+++|+..... .......+.+.|+..+. +++ +|+|++|
T Consensus 192 yD~VIIDtpp~~~~~--d-------~~~l~~~aD~vilVv~~~~~-~~~~~~~~~~~l~~~~~------~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT--D-------AQLFSKFTGNVVYVVNSENN-NKDEVKKGKELIEATGA------KLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTCS--H-------HHHHHHHHCEEEEEEETTSC-CHHHHHHHHHHHHTTTC------EEEEEEEEEEC
T ss_pred CCEEEEeCCCCchHH--H-------HHHHHHHCCEEEEEEeCCCC-cHHHHHHHHHHHHhCCC------CEEEEEEeCCc
Confidence 357899999864321 0 11123458999999988654 44555666677776664 444 8999998
Q ss_pred CC
Q 007583 424 YH 425 (597)
Q Consensus 424 l~ 425 (597)
.-
T Consensus 256 ~~ 257 (271)
T 3bfv_A 256 KD 257 (271)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 356
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.98 E-value=0.013 Score=71.52 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|||++|||||||++.|.|..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999976
No 357
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.97 E-value=0.095 Score=56.81 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 007583 296 GLATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~ 318 (597)
.+.+|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 57899999999999999999765
No 358
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.25 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..-|.|.||||+|||+|.+++++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 356999999999999999999985
No 359
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.93 E-value=0.028 Score=54.08 Aligned_cols=68 Identities=16% Similarity=0.032 Sum_probs=43.8
Q ss_pred CCceEEEeecccc-cccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEec
Q 007583 343 SGRKVLLSDTVGF-ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 421 (597)
Q Consensus 343 ~g~~i~LiDTpG~-i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNK 421 (597)
...+++++|||+. ... .+...+..+|.+++++..+.. .......+.+.++.+. ..++.+|+|+
T Consensus 66 ~~yD~viiD~p~~~~~~----------~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~vv~N~ 129 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE----------DLEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG-----NNRFRILLTI 129 (209)
T ss_dssp GGCSEEEEEEECCCSSS----------HHHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC-----SSSEEEEECS
T ss_pred hcCCEEEEeCCCCcCcH----------HHHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc-----CCCEEEEEEe
Confidence 3467899999987 432 112335569999999876532 3334445556666643 1368899999
Q ss_pred CCCCC
Q 007583 422 IDYHD 426 (597)
Q Consensus 422 iDl~~ 426 (597)
+|...
T Consensus 130 ~~~~~ 134 (209)
T 3cwq_A 130 IPPYP 134 (209)
T ss_dssp BCCTT
T ss_pred cCCcc
Confidence 98653
No 360
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.0087 Score=65.14 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
.+++|+|++|||||||++.|+|..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 689999999999999999999864
No 361
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.92 E-value=0.016 Score=64.22 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL 322 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v 322 (597)
-+++|+|++|||||||++.|+|...
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999999999999999999753
No 362
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.92 E-value=0.014 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 363
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.91 E-value=0.011 Score=66.52 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDL 322 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v 322 (597)
-+++|+|++|||||||++.|+|...
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 4899999999999999999999653
No 364
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.89 E-value=0.015 Score=71.19 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEe
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL 341 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l 341 (597)
-.++|||++|||||||++.|+|.. +|+.+.+.+
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~-----------~~~~G~I~i 477 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY-----------DVLKGKITI 477 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS-----------CCSEEEEEE
T ss_pred cEEEEEecCCCcHHHHHHHhcccc-----------ccccCcccC
Confidence 389999999999999999999976 566666665
No 365
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.88 E-value=0.013 Score=55.96 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...|+|+|++|||||||.+.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999998643
No 366
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.87 E-value=0.017 Score=52.78 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~ 318 (597)
...+|+|+||||||||+.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999986
No 367
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.87 E-value=0.016 Score=55.05 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++|||||||.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999986
No 368
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.86 E-value=0.015 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+|+|+|++|||||||++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999874
No 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.84 E-value=0.011 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|++|+|||||+++|.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999854
No 370
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.80 E-value=0.26 Score=49.95 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=44.8
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 346 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 346 ~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+++++|||...... .+......+|.+++|+..... .......+.+.|+..+.. .+-+|+||+|.-
T Consensus 203 D~VIIDtpp~~~~~---------da~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g~~-----~~GvVlN~v~~~ 267 (286)
T 3la6_A 203 DLVLIDTPPILAVT---------DAAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNGIP-----VKGVILNSIFRR 267 (286)
T ss_dssp SEEEEECCCTTTCT---------HHHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTTCC-----CCEEEEEEECCC
T ss_pred CEEEEcCCCCcchH---------HHHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCCCC-----EEEEEEcCcccc
Confidence 57899999874321 112234569999999998764 455666677888888752 457899999854
No 371
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.74 E-value=0.017 Score=60.50 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999999975
No 372
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.74 E-value=0.018 Score=64.75 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999975
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.69 E-value=0.015 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++|||||||.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999764
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.67 E-value=0.038 Score=56.35 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...+|+|+|++|||||||.+.|.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998753
No 375
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.66 E-value=0.017 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|+|++||||||+.+.|.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 376
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.26 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..-|.|.|++|+|||+|.+++++.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 457999999999999999999985
No 377
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.65 E-value=0.018 Score=70.28 Aligned_cols=37 Identities=43% Similarity=0.584 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCcccccccceecCceeEEEecCCce
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGRK 346 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~~~~~~f~Tld~t~~~i~l~~g~~ 346 (597)
-+++|+|++|||||||++.|.|.. +|+.+.+.+ +|.+
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~-----------~p~~G~I~i-~g~~ 1096 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFY-----------DPMAGSVFL-DGKE 1096 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSS-----------CCSEEEEES-SSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc-----------CCCCCEEEE-CCEE
Confidence 379999999999999999999976 556666665 4443
No 378
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.64 E-value=0.014 Score=56.94 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999885
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.63 E-value=0.017 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+.++|+|++|||||||+++|...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999864
No 380
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.62 E-value=0.019 Score=60.45 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~ 318 (597)
..++|+|+||||||||+++|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999998
No 381
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.60 E-value=0.068 Score=54.08 Aligned_cols=69 Identities=14% Similarity=0.011 Sum_probs=39.9
Q ss_pred CceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEE-EEEecC
Q 007583 344 GRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI-EVWNKI 422 (597)
Q Consensus 344 g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~I-iVlNKi 422 (597)
..+++++|||+..... .+...+..+|.+++|+..+.. .......+.+.+..++... ..+++ +|+||+
T Consensus 156 ~yD~ViiD~p~~~~~~---------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~--~~~~~gvV~N~~ 223 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG---------GFAAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNY--KVRLAGCVANRS 223 (307)
T ss_dssp SCSEEEEEECCSSCCG---------GGGGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTC--CCEEEEEEEESC
T ss_pred cCCEEEEeCCCccchH---------HHHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcC--CCceEEEEEecC
Confidence 4578999998764321 011224569999999875432 2334444555666543211 12434 899999
Q ss_pred CC
Q 007583 423 DY 424 (597)
Q Consensus 423 Dl 424 (597)
+.
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 83
No 382
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.54 E-value=0.018 Score=62.18 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|+|..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999999999965
No 383
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.26 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..-|.|.||||+|||+|.+++++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999985
No 384
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.44 E-value=0.019 Score=54.80 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
-.++|+|++|||||||++.|++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999853
No 385
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.44 E-value=0.024 Score=52.02 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999986
No 386
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.43 E-value=0.02 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-|+|+||+|||||||+++|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998643
No 387
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.02 Score=64.50 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCCCc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSDLF 323 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~v~ 323 (597)
-+++|+|++|||||||++.|+|...+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 36899999999999999999997643
No 388
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.29 E-value=0.081 Score=50.99 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCceEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecC
Q 007583 343 SGRKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 422 (597)
Q Consensus 343 ~g~~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKi 422 (597)
...+++++|||+..... +...+..+|.+++|++.+.. .......+.+.+..+++ ..+.+|+||+
T Consensus 130 ~~yD~viiD~pp~~~~~----------~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~~~~~~~-----~~~~~v~N~~ 193 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL----------TRGTAKAVDMMIAVIEPNLN-SIKTGLNIEKLAGDLGI-----KKVRYVINKV 193 (254)
T ss_dssp TCCSEEEEEECTTCTTC----------CHHHHTTCSEEEEEECSSHH-HHHHHHHHHHHHHHHTC-----SCEEEEEEEE
T ss_pred CCCCEEEEeCCCcccHH----------HHHHHHHCCEEEEecCCCHH-HHHHHHHHHHHHHHcCC-----ccEEEEEeCC
Confidence 45678899998764321 23345679999999976543 34445566667777776 2578999999
Q ss_pred C
Q 007583 423 D 423 (597)
Q Consensus 423 D 423 (597)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 8
No 389
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.18 E-value=0.35 Score=49.16 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=42.0
Q ss_pred eEEEeecccccccchhhHHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccCCCcEEEEEecCCCC
Q 007583 346 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 425 (597)
Q Consensus 346 ~i~LiDTpG~i~~lp~~lve~f~sTl~~l~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P~IiVlNKiDl~ 425 (597)
+++++|||+..... . +......+|.+++|+..... .........+.|+..++. ..-+|+|++|.-
T Consensus 215 D~VIIDtpp~~~~~-----d----~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~~~~-----~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVS-----D----AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQAGVN-----IKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCT-----H----HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHTTCC-----CCCEEEEECCCC
T ss_pred CEEEEcCCCCchhH-----H----HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhCCCC-----eEEEEEeCCccC
Confidence 57899999874311 1 11223569999999987654 344555666777777652 234788999854
No 390
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.18 E-value=0.026 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|.|+|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999864
No 391
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.16 E-value=0.026 Score=52.84 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999863
No 392
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.05 E-value=0.029 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 393
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.05 E-value=0.29 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|.|.|++|+|||+|.+++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467999999999999999999874
No 394
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.02 E-value=0.032 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 395
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.98 E-value=0.024 Score=55.65 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-++|+|++|+|||||+++|.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999853
No 396
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.96 E-value=0.024 Score=57.13 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
-.++|+|++|+|||||++.|++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999999874
No 397
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.94 E-value=0.032 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
.+.|+|+|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 398
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.93 E-value=0.27 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...|.|.|++|+|||||+++|.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 3579999999999999999999753
No 399
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.41 Score=51.95 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...-|.|.|++|+|||+|.+++++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3467999999999999999999985
No 400
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.85 E-value=0.035 Score=51.45 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|+|.+||||||+.+.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 401
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.82 E-value=0.033 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.82 E-value=0.027 Score=58.14 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...++|+|++|+|||||+++|++.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999985
No 403
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.78 E-value=0.039 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~ 318 (597)
....+|+|+||||||||+.+|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3688999999999999999985
No 404
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.76 E-value=0.037 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 405
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.76 E-value=0.039 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999874
No 406
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.71 E-value=0.0057 Score=60.40 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
.++|+|++|||||||+++|++..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35789999999999999999864
No 407
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.65 E-value=0.03 Score=57.74 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=45.6
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHH---HcCCCccCCCcEEEEEecCCCCCccc--ccccccccc-----cccc
Q 007583 373 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQ---QVGVSEEKLKNMIEVWNKIDYHDEEM--GDVEYIDGD-----DISN 442 (597)
Q Consensus 373 ~l~~aDliL~VvDas~~~~~~~~~~v~~iL~---~lgi~~~~~~P~IiVlNKiDl~~~~~--~~~~~i~~~-----~~~~ 442 (597)
.+.++|.+++|+|+..|..... .+..+|. ..++ |.++|+||+|+.++.. ..++.+... +...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~~~~------~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEANDI------QPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH--HHHHHHHHHHTTTC------EEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHHCCC------CEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 3677999999999987644332 3444443 3343 7899999999987643 101211111 2233
Q ss_pred cccccccCCCCcc
Q 007583 443 FSRAEDKDTTSEP 455 (597)
Q Consensus 443 ~~sa~~~~gi~eL 455 (597)
+.++..+.|++.|
T Consensus 155 ~~sa~~~~g~~~L 167 (307)
T 1t9h_A 155 LTSSKDQDSLADI 167 (307)
T ss_dssp ECCHHHHTTCTTT
T ss_pred EEecCCCCCHHHH
Confidence 4566666676666
No 408
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.60 E-value=0.041 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...|+|+|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 409
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.57 E-value=0.044 Score=51.27 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999865
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.55 E-value=0.035 Score=53.51 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
-.++|+|++|||||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 48999999999999999999984
No 411
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.53 E-value=0.31 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+.|.|++|+|||+|.++|...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 412
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.53 E-value=0.042 Score=56.93 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~ 318 (597)
....+|+|+||||||||+++|+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
No 413
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.52 E-value=0.038 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
.+.|+|+|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 414
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.51 E-value=0.11 Score=53.77 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=46.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCCC---cccc--cccceecCceeEEE--ecCCceEEEeecccccccchh-hHHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSDL---FSDA--RLFATLDPRLKSVV--LPSGRKVLLSDTVGFISDLPL-QLVDAFH 368 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~v---~~~~--~~f~Tld~t~~~i~--l~~g~~i~LiDTpG~i~~lp~-~lve~f~ 368 (597)
.+.|+|+|+||||||||...|..... ...+ +.+..++.+++... -..+.+..++|..-+-..... .+.+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~ 82 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLAT 82 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHH
Confidence 36899999999999999999986531 0111 11111222211111 114667778887665443222 2223334
Q ss_pred HhHHHHHhcCEEEEEE
Q 007583 369 ATLEEVVEADLLVHVL 384 (597)
Q Consensus 369 sTl~~l~~aDliL~Vv 384 (597)
..+..+...+-+.++|
T Consensus 83 ~~i~~i~~~gk~pIlV 98 (322)
T 3exa_A 83 PLITEIHERGRLPFLV 98 (322)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhCCCcEEEE
Confidence 4455554445455444
No 415
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.51 E-value=0.033 Score=55.70 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-++|+|++|+|||||+++|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999999853
No 416
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.46 E-value=0.046 Score=50.60 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 417
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.40 E-value=0.052 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.39 E-value=0.051 Score=51.98 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 419
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.38 E-value=0.04 Score=54.69 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|+|+|++|||||||.+.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999975
No 420
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.35 E-value=0.013 Score=61.89 Aligned_cols=21 Identities=48% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 007583 299 TVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g 319 (597)
.++|+|+||||||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999965
No 421
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.34 E-value=0.04 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
-.++|+|++|+|||||++.|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 422
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.27 E-value=0.02 Score=54.26 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.|+|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 423
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.25 E-value=0.04 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.+|+|+|++||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 424
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.21 E-value=0.037 Score=65.42 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|+||||||||++.|+|..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999643
No 425
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.21 E-value=0.055 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 426
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.13 E-value=0.58 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.-|.|+|++|+|||||++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999984
No 427
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.10 E-value=0.19 Score=50.80 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+.|.|++|+|||+|.++|...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356777899999999999999864
No 428
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.07 E-value=0.061 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
....|+|+|.+||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999753
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.07 E-value=0.069 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...|+|+|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.05 E-value=0.48 Score=50.49 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
....|.|+|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999763
No 431
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.04 E-value=0.038 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.+|+|+|++||||||+.+.|.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 432
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.03 E-value=0.082 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|+|++||||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 433
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.01 E-value=0.18 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...+.|.|++|+|||||+++|.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 434
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.99 E-value=0.058 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...|+|+|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 435
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.98 E-value=0.066 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|+|+|++||||||+.+.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999975
No 436
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.95 E-value=0.042 Score=56.50 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...+|+|+||||||||+++|..
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 3899999999999999999984
No 437
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.91 E-value=0.061 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999753
No 438
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.90 E-value=0.057 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..|+|+|++||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 439
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.88 E-value=0.056 Score=51.47 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 007583 299 TVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g 319 (597)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 440
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.86 E-value=0.056 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999853
No 441
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.80 E-value=0.84 Score=49.79 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|.|.|++|+|||+|.++|...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 442
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.80 E-value=0.065 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
.+.|+|+|++||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 443
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.77 E-value=0.06 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 444
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.69 E-value=0.063 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 007583 299 TVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 445
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.67 E-value=0.052 Score=58.05 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..++|+|++|||||||+++|.+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999863
No 446
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.62 E-value=0.057 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|++||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
No 447
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.62 E-value=0.24 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
+.|+|+|+||||||||...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 689999999999999999999754
No 448
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.60 E-value=0.054 Score=57.35 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..++|+|++|+|||||+++|.+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999973
No 449
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.57 E-value=0.066 Score=51.07 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 007583 299 TVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g 319 (597)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 450
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.56 E-value=0.067 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 007583 299 TVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g 319 (597)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 451
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.51 E-value=0.053 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
++|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 452
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.51 E-value=0.058 Score=56.74 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..++|+|+||+|||||+++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4899999999999999999985
No 453
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.51 E-value=0.087 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|.|+|++|||||||.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 454
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.46 E-value=0.06 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 455
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.43 E-value=0.074 Score=48.33 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 007583 299 TVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g 319 (597)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 456
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.43 E-value=0.45 Score=49.42 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|.|.|++|+|||+|.++|...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 457
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.43 E-value=0.058 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
-.++|+|++|+|||||+..|++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 458
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.41 E-value=0.039 Score=62.56 Aligned_cols=21 Identities=48% Similarity=0.613 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~ 318 (597)
-.++|+|++|||||||++.|+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 489999999999999998764
No 459
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.26 E-value=0.64 Score=53.87 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...-|.|.|++|+|||+|.+++++..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999864
No 460
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.25 E-value=0.078 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..+|+|+|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 461
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.20 E-value=0.061 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|.|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 462
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.20 E-value=0.47 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|.|.|++|+|||+|.++|...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 463
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.15 E-value=0.058 Score=53.32 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
....|.|+|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999864
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.03 E-value=0.076 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
++|+|.|++||||||+.+.|...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999763
No 465
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.01 E-value=0.099 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+.|.|++|+|||||++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999864
No 466
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.96 E-value=0.1 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
...|+|+|++||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999974
No 467
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.83 E-value=0.27 Score=49.18 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
....+.|.|++|+|||+|.+++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988754
No 468
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.82 E-value=0.071 Score=58.65 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.4
Q ss_pred EEEccCCCCCCHHHHHHHHHHHHhh
Q 007583 540 DVKISARTGVGLQELLEIIDERLKT 564 (597)
Q Consensus 540 vv~vSA~tG~Gi~eLL~~I~~~~~~ 564 (597)
++.+....|.|=..|+..+...+..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 6777888999999999988877654
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.77 E-value=0.095 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..+|+|+|++||||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 470
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.74 E-value=0.1 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+|+|.|++||||||+.+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999763
No 471
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.70 E-value=1.5 Score=43.22 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
....+.|.|++|+|||+|.+++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3578999999999999999999874
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.70 E-value=0.051 Score=60.42 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=44.7
Q ss_pred cchHHHHHHHHhcccccCCCcEEEECCCCCh---------HHHHHHHHhcCCCccchhhhHHHHHH---hhccchHHHHH
Q 007583 132 PGTVETIKCHINGAESKGELDAIFVNAILSG---------IQQRNLERAWGKPVLDRVGLIIEIFN---AHAHTKEAKLQ 199 (597)
Q Consensus 132 ~Gk~~el~~~~~~~~~~~~~~~v~~~~~Lsp---------~Q~~nle~~~~~~V~DR~~lIL~IF~---~rA~t~eaklQ 199 (597)
.|-.+-++..+.+ ..+.|+++.-+-+ .=.+..+..+. .+.+-.++|-||. ..|.-+||-+.
T Consensus 177 rah~~~~~~~~~~-----~~~~lll~pl~g~~k~~d~~~~~r~~~~~~~~~--~~p~~~~~l~~~p~~m~~agprea~~h 249 (552)
T 3cr8_A 177 RAQYEFCLKSAIE-----NEANLLLHPQVGGDITEAPAYFGLVRSFLAIRD--RFPAATTQLSLLPAPPPEASGRALLLR 249 (552)
T ss_dssp HHHHHHHHHHHHH-----TTCEEEECCBCCCCTTTCTTHHHHHHHHHHHGG--GSCGGGEEECBBCSCCCCSCSHHHHHH
T ss_pred hHHHHHHHHHHHh-----cCCeEEEEeccCCCCCCCCCHHHHHHHHHHHHH--hCCCccEEEeecchhhcccCcHHHHHH
Confidence 4555556655532 3466777654333 34666777665 3467677766665 34888999887
Q ss_pred HHHHhhhhcccccc
Q 007583 200 AELAALMYKKSRLV 213 (597)
Q Consensus 200 veLA~l~y~~~rl~ 213 (597)
. +.+..|--+.+.
T Consensus 250 a-~~r~n~G~th~i 262 (552)
T 3cr8_A 250 A-IVARNFGCSLLI 262 (552)
T ss_dssp H-HHHHHHTCSEEE
T ss_pred H-HHHHhCCCCeee
Confidence 6 445556555554
No 473
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.66 E-value=0.09 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+.|+|++|+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 474
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.66 E-value=0.28 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+.|+|++|+|||||+..++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998864
No 475
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.63 E-value=0.1 Score=47.54 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..-+|+|.|.+||||||+.+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
No 476
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.61 E-value=0.093 Score=50.11 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 007583 299 TVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g 319 (597)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 477
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.56 E-value=0.12 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...|+|.|++||||||+++.|....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998753
No 478
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.40 E-value=0.13 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..++|.|+|+|||||+|....|+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578889999999999999999854
No 479
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.29 E-value=0.13 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHc
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
....|+|+|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999973
No 480
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.29 E-value=0.11 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 007583 297 LATVAVVGYTNAGKSTLVSALS 318 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~ 318 (597)
....+|+|+||||||||+.+|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 481
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.28 E-value=0.34 Score=57.05 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSAL 317 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL 317 (597)
..++|+|+||||||||++.+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 482
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.28 E-value=0.11 Score=50.14 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHc
Q 007583 299 TVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 299 ~VaLVG~tgAGKSTLlnaL~g 319 (597)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 483
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.27 E-value=0.089 Score=60.72 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
..++|+|+||||||||++.+.|..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 479999999999999999998753
No 484
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.24 E-value=0.094 Score=50.34 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 485
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.24 E-value=0.34 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
....|.|.|++|+|||+|.+++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999864
No 486
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.18 E-value=0.41 Score=51.15 Aligned_cols=88 Identities=13% Similarity=0.172 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC---Cccccc--ccceecCceeEEE--ecCCceEEEeecccccccch-hhHHHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD---LFSDAR--LFATLDPRLKSVV--LPSGRKVLLSDTVGFISDLP-LQLVDAFHA 369 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~---v~~~~~--~f~Tld~t~~~i~--l~~g~~i~LiDTpG~i~~lp-~~lve~f~s 369 (597)
+.|+|+|+||||||||...|.... +...+. .+..++.+++... --.|.+..++|..-+-.... ..+.+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~ 82 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMN 82 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHH
Confidence 689999999999999999997432 111110 1111221111111 11456777887766543322 233333344
Q ss_pred hHHHHHhcCEEEEEEe
Q 007583 370 TLEEVVEADLLVHVLD 385 (597)
Q Consensus 370 Tl~~l~~aDliL~VvD 385 (597)
.+..+..-+-+.++|-
T Consensus 83 ~i~~i~~~g~~pilVG 98 (409)
T 3eph_A 83 AIEDIHRRGKIPIVVG 98 (409)
T ss_dssp HHHHHHTTTCEEEEEC
T ss_pred HHHHHHhcCCCEEEEC
Confidence 5555555555555553
No 487
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.15 E-value=0.13 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+|+|+|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999999999999753
No 488
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.14 E-value=0.089 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
+.+.|+|++|+|||||+++|.+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999883
No 489
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.12 E-value=0.095 Score=60.80 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..++|+|+||+|||||++.+.|.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 48999999999999999999874
No 490
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.07 E-value=0.098 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
-+++|+|++|||||||++.|++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999854
No 491
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.04 E-value=0.14 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...|+|+|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 492
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.01 E-value=0.38 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+.|+|++|+|||||.++|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 57999999999999999999874
No 493
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.95 E-value=0.13 Score=48.89 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+.|.|++|+|||||++++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 494
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.80 E-value=0.13 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
..+.|.|++|+|||||+++|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 495
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.74 E-value=0.55 Score=54.42 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcCC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDSD 321 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~~ 321 (597)
...|.|+|++|+|||||+++|.+..
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999864
No 496
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.69 E-value=0.098 Score=59.28 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCCHHHHH
Q 007583 298 ATVAVVGYTNAGKSTLV 314 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLl 314 (597)
-+++|+|+||||||||+
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 58999999999999996
No 497
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.55 E-value=0.13 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHcC
Q 007583 297 LATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
...+.|.|++|+|||||++++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999764
No 498
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.40 E-value=0.14 Score=52.87 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHcC
Q 007583 298 ATVAVVGYTNAGKSTLVSALSDS 320 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g~ 320 (597)
+.+.|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.32 E-value=0.16 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHc
Q 007583 298 ATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 298 ~~VaLVG~tgAGKSTLlnaL~g 319 (597)
..|.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 500
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.98 E-value=0.11 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=18.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHc
Q 007583 297 LATVAVVGYTNAGKSTLVSALSD 319 (597)
Q Consensus 297 ~~~VaLVG~tgAGKSTLlnaL~g 319 (597)
.+.|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
Done!