BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007584
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 96 PKDKRPKMDRGVTHQCS----VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDL 151
P+ P + T+Q V+LK+L H W F +PVD VKL++PDY+ II PMD+
Sbjct: 27 PETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDM 86
Query: 152 GTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201
GT+K RL+ N Y + E + D F+N +YN P +++ MA+ L LF
Sbjct: 87 GTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 136
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 59/99 (59%)
Query: 113 VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVAD 172
V+LK L H W F RPVD VKL +PDY++II PMDL T+K RL+ Y+ + E + D
Sbjct: 20 VVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIED 79
Query: 173 VRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211
FSN LYN P +++ MAQ L LF K + ++
Sbjct: 80 FNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQMPQE 118
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 92 VIEGPKDKRPKMDRGVTHQCS----VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISK 147
V G PK VT+Q V++K+L H W F +PVD VKL +PDY II +
Sbjct: 14 VPRGSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQ 73
Query: 148 PMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKS 207
PMD+GT+K RL+ N Y + E + D F+N +YN P +++ MAQ L +F K S
Sbjct: 74 PMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVAS 133
Query: 208 L---EEKWSSEVPK 218
+ E++ +PK
Sbjct: 134 MPQEEQELVVTIPK 147
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 92 VIEGPKDKRPKMDRGVTHQCS----VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISK 147
V G PK VT+Q V++K+L H W F +PVD VKL +PDY II +
Sbjct: 14 VPRGSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQ 73
Query: 148 PMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKS 207
PMD+GT+K RL+ N Y + E + D F+N +YN P +++ MAQ L +F K S
Sbjct: 74 PMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVAS 133
Query: 208 LEEK 211
+ ++
Sbjct: 134 MPQE 137
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 96 PKDKRPKMDRGVTHQCS----VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDL 151
P+ P + T+Q V+LK+L H W F +PVD VKL++PDY+ II PMD+
Sbjct: 11 PETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDM 70
Query: 152 GTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201
GT+K RL+ N Y + E + D F+N +YN P +++ MA+ L LF
Sbjct: 71 GTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 120
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 96 PKDKRPKMDRGVTHQCS----VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDL 151
P+ P + T+Q V+LK+L H W F +PVD VKL++PDY+ II PMD+
Sbjct: 7 PETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDM 66
Query: 152 GTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201
GT+K RL+ N Y + E + D F+N +YN P +++ MA+ L LF
Sbjct: 67 GTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 96 PKDKRPKMDRGVTHQCS----VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDL 151
P+ P + T+Q V+LK+L H W F +PVD VKL++PDY+ II PMD+
Sbjct: 7 PETSNPNKPKRETNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDM 66
Query: 152 GTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201
GT+K RL+ N Y + E + D F+N +YN P +++ MA+ L LF
Sbjct: 67 GTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 88.6 bits (218), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 112 SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171
+V++K+L H W F +PVD +KL++PDY II PMD+GT+K RL+ N Y + E +
Sbjct: 27 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 86
Query: 172 DVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAGLGK 223
D F+N +YN P +++ MAQ L +F K + ++ +P A GK
Sbjct: 87 DFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEEVELLPPAPKGK 138
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 110 QCSVILKSLM--MHPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVS 166
C+VILK L+ H A W F +PVD L + DY II PMDL TVK +++ Y +
Sbjct: 5 HCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDA 64
Query: 167 DEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210
EF ADVRL FSN YNPP+++V MA++L ++F+ ++ + +
Sbjct: 65 QEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 108
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 110 QCSVILKSLM--MHPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVS 166
C+ ILK L+ H A W F +PVD L + DY II PMDL TVK +++ Y +
Sbjct: 11 HCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDA 70
Query: 167 DEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208
EF ADVRL FSN YNPP+++V MA++L ++F+ ++ +
Sbjct: 71 QEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 112
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 86.7 bits (213), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 58/99 (58%)
Query: 113 VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVAD 172
V+LK+L H W F +PVD VKL +PDY++II PMDL T+K RL+ Y + E + D
Sbjct: 21 VVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIED 80
Query: 173 VRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211
FSN LYN +++ MAQ L LF K + ++
Sbjct: 81 FNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQMPQE 119
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 86.7 bits (213), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 57/90 (63%)
Query: 112 SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171
+V++K+L H W F +PVD +KL++PDY II PMD+GT+K RL+ N Y + E +
Sbjct: 25 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 84
Query: 172 DVRLTFSNAMLYNPPENNVHKMAQELNNLF 201
D F+N +YN P +++ MAQ L +F
Sbjct: 85 DFNTMFTNCYIYNKPTDDIVLMAQALEKIF 114
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 57/90 (63%)
Query: 112 SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171
+V++K+L H W F +PVD +KL++PDY II PMD+GT+K RL+ N Y + E +
Sbjct: 23 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 82
Query: 172 DVRLTFSNAMLYNPPENNVHKMAQELNNLF 201
D F+N +YN P +++ MAQ L +F
Sbjct: 83 DFNTMFTNCYIYNKPTDDIVLMAQALEKIF 112
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 85.9 bits (211), Expect = 6e-17, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 110 QCSVILKSLM--MHPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVS 166
C+ ILK L+ H A W F +PVD L + DY II PMDL TVK +++ Y +
Sbjct: 9 HCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDA 68
Query: 167 DEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210
EF ADVRL FSN YNPP+++V MA++L ++F+ ++ + +
Sbjct: 69 QEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 112
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 111 CSVILKSLMM--HPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSD 167
CS ILK + H A W F +PVD L + DY II PMD+ T+K++L+ Y +
Sbjct: 14 CSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQ 73
Query: 168 EFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208
EF ADVRL FSN YNPP++ V MA++L ++F++++ +
Sbjct: 74 EFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 114
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 111 CSVILKSLMM--HPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSD 167
CS ILK + H A W F +PVD L + DY II PMD+ T+K++L+ Y +
Sbjct: 27 CSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ 86
Query: 168 EFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208
EF ADVRL FSN YNPP++ V MA++L ++F++++ +
Sbjct: 87 EFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 111 CSVILKSLMM--HPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSD 167
CS ILK + H A W F +PVD L + DY II PMD+ T+K++L+ Y +
Sbjct: 25 CSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ 84
Query: 168 EFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208
EF ADVRL FSN YNPP++ V MA++L ++F++++ +
Sbjct: 85 EFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 125
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 110 QCSVILKSLMMH---PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVS 166
CS ILK ++ P W F PVD L + +Y+ ++ PMDLGT+K ++D Y +
Sbjct: 18 HCSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDA 77
Query: 167 DEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211
EF ADVRL F N YNPP++ V MA+ L ++F++ + + ++
Sbjct: 78 YEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDE 122
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 111 CSVILKSLM--MHPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSD 167
C IL+ ++ H A W F +PVD L++ DY II PMDL TVK ++D Y +
Sbjct: 12 CDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQ 71
Query: 168 EFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208
F ADVRL FSN YNPP++ V MA++L ++F++++ +
Sbjct: 72 GFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 112
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 111 CSVILKSLM--MHPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSD 167
C IL+ ++ H A W F +PVD L++ DY II PMDL TVK ++D Y +
Sbjct: 17 CDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQ 76
Query: 168 EFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208
F ADVRL FSN YNPP++ V MA++L ++F++++ +
Sbjct: 77 GFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 117
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 111 CSVILKSLMM--HPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSD 167
CS ILK + H A W F +PVD L + DY II PMD+ T+K++L+ Y +
Sbjct: 6 CSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQ 65
Query: 168 EFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208
EF ADVRL FSN YNPP++ V MA++L ++F++++ +
Sbjct: 66 EFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 106
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 113 VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVAD 172
V+ K+L H W F +PVD VKL +PDY II +P D GT+K RL+ N Y + E D
Sbjct: 13 VVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQD 72
Query: 173 VRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL---EEKWSSEVPK 218
F+N +YN P +++ AQ L +F K S E++ +PK
Sbjct: 73 FNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQEEQELVVTIPK 121
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 113 VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVAD 172
V+ K+L H W F +PVD VKL +PDY II +P D GT+K RL+ N Y + E D
Sbjct: 19 VVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQD 78
Query: 173 VRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL---EEKWSSEVPK 218
F+N +YN P +++ AQ L +F K S E++ +PK
Sbjct: 79 FNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQEEQELVVTIPK 127
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
+L+SL H W F PVDP D PDY+ +I +PMDL T++ R+ R Y EFVAD+
Sbjct: 28 VLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 85
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209
F N YNP ++ ++ A+ L + F K K +
Sbjct: 86 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 121
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
+L+SL H W F PVDP D PDY+ +I +PMDL T++ R+ R Y EFVAD+
Sbjct: 21 VLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209
F N YNP ++ ++ A+ L + F K K +
Sbjct: 79 TAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 99 KRPKMDRGVTHQCSV--ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKT 156
+RPK RG H ++ IL L H A W F +PV+ K ++PDY+ I +PMDL T++
Sbjct: 7 QRPK--RG-PHDAAIQNILTELQNHAAAWPFLQPVN--KEEVPDYYDFIKEPMDLSTMEI 61
Query: 157 RLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210
+L+ N Y ++F+ D RL F+N +YN + +K A L F+ K K + E
Sbjct: 62 KLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPE 115
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 96 PKDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVK 155
P DKR +C +L L H F DPV L +PDY+ II PMDL T+K
Sbjct: 19 PIDKR---------KCERLLLFLYCHEMSLAFQ---DPVPLTVPDYYKIIKNPMDLSTIK 66
Query: 156 TRL--DRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL--EEK 211
RL D ++YS ++FVAD RL F N +N P++ V +L N F+ K+L E++
Sbjct: 67 KRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKR 126
Query: 212 WSSEVPKAG 220
+ P +G
Sbjct: 127 FPKSGPSSG 135
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
+L+SL H W F PVDP D PDY+ +I +PMDL T++ R+ R Y EFVAD+
Sbjct: 80 VLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209
F N YNP ++ ++ A+ L + F K K +
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 111 CSVILKSLMM--HPA-GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSD 167
CS ILK H A W F +PVD L + DY II P D T+K++L+ Y +
Sbjct: 12 CSGILKEXFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQ 71
Query: 168 EFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKW 205
EF ADVRL FSN YNPP++ V A++L ++F+ ++
Sbjct: 72 EFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRF 109
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
+L+SL H W F PVDP D PDY+ +I +PMDL T++ R+ R Y EFVAD+
Sbjct: 21 VLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209
F N YNP ++ ++ A+ L + F K K +
Sbjct: 79 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
+L+SL H W F PVDP D PDY+ +I +PMDL T++ R+ R Y EFVAD+
Sbjct: 80 VLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209
F N YNP ++ ++ A+ L + F K K +
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 14/115 (12%)
Query: 96 PKDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVK 155
P DKR +C +L L H F DPV L +PDY+ II PMDL T+K
Sbjct: 80 PIDKR---------KCERLLLFLYCHEMSLAFQ---DPVPLTVPDYYKIIKNPMDLSTIK 127
Query: 156 TRL--DRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSL 208
RL D ++YS ++FVAD RL F N +N P++ V +L N F+ K+L
Sbjct: 128 KRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 127 FNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186
F +PVDP L IPDYF I+ PMDL T+K +LD Y ++V D+ L F+NA LYN
Sbjct: 38 FRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRK 97
Query: 187 ENNVHKMAQELNNLFD 202
+ V+K +L+ +F+
Sbjct: 98 TSRVYKYCSKLSEVFE 113
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 122 PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181
P F +PVDP L IPDYF I+ PMDL T+K +LD Y ++V DV L F+NA
Sbjct: 30 PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 89
Query: 182 LYNPPENNVHKMAQELNNLFD 202
LYN + V+K +L +F+
Sbjct: 90 LYNRKTSRVYKFCSKLAEVFE 110
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 122 PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181
P F +PVDP L IPDYF I+ PMDL T+K +LD Y ++V DV L F+NA
Sbjct: 28 PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87
Query: 182 LYNPPENNVHKMAQELNNLFD 202
LYN + V+K +L +F+
Sbjct: 88 LYNRKTSRVYKFCSKLAEVFE 108
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
+L+SL H W F PVDP D PDY+ +I +P DL T + R+ R Y EFVAD
Sbjct: 80 VLRSLQAHKXAWPFLEPVDPN--DAPDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADX 137
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209
F N YNP ++ ++ A+ L + F K K +
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 112 SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171
+++ + +M P W F+ PV+ K +PDY+ +I PMDL T++ + ++ Y + F+
Sbjct: 36 NIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLD 93
Query: 172 DVRLTFSNAMLYNPPENNVHKMAQELNNL 200
DV L +N++ YN PE+ K AQE+ N+
Sbjct: 94 DVNLILANSVKYNGPESQYTKTAQEIVNV 122
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 112 SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171
+++ + +M P W F+ PV+ K +PDY+ +I PMDL T++ + ++ Y + F+
Sbjct: 176 NIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLD 233
Query: 172 DVRLTFSNAMLYNPPENNVHKMAQELNNL 200
DV L +N++ YN PE+ K AQE+ N+
Sbjct: 234 DVNLILANSVKYNGPESQYTKTAQEIVNV 262
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 18/129 (13%)
Query: 122 PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181
P + F+ PV+ K+ + DY+ II++PMDL T++ + + LY +EF + L N+
Sbjct: 63 PNTYPFHTPVN-AKV-VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSA 120
Query: 182 LYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKA---------------GLGKILS 226
YN P++++ +++Q + +L D K K E+K + + KA L I++
Sbjct: 121 TYNGPKHSLTQISQSMLDLCDEKLKEKEDKL-ARLEKAINPLLDDDDQVAFSFILDNIVT 179
Query: 227 GKMMEVNDT 235
KMM V D+
Sbjct: 180 QKMMAVPDS 188
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 112 SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171
+++ + +M P W F+ PV+ K +PDY+ +I PMDL T++ + ++ Y + F+
Sbjct: 155 NIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLD 212
Query: 172 DVRLTFSNAMLYNPPENNVHKMAQELNNL 200
DV L +N++ YN PE+ K AQE+ N+
Sbjct: 213 DVNLILANSVKYNGPESQYTKTAQEIVNV 241
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 18/129 (13%)
Query: 122 PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181
P + F+ PV+ K+ + DY+ II++PMDL T++ + + LY +EF + L N+
Sbjct: 42 PNTYPFHTPVN-AKV-VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSA 99
Query: 182 LYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKA---------------GLGKILS 226
YN P++++ +++Q + +L D K K E+K + + KA L I++
Sbjct: 100 TYNGPKHSLTQISQSMLDLCDEKLKEKEDKL-ARLEKAINPLLDDDDQVAFSFILDNIVT 158
Query: 227 GKMMEVNDT 235
KMM V D+
Sbjct: 159 QKMMAVPDS 167
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 112 SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171
+++ + +M P W F+ PV+ K +PDY+ +I PMDL T++ + ++ Y + F+
Sbjct: 143 NIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLD 200
Query: 172 DVRLTFSNAMLYNPPENNVHKMAQELNNL 200
DV L +N++ YN PE+ K AQE+ N+
Sbjct: 201 DVNLILANSVKYNGPESQYTKTAQEIVNV 229
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 24/155 (15%)
Query: 100 RPKMDRGVTHQCSVILKSLMMH----PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVK 155
R + D VT S IL+S++ P + F+ PV+ K+ + DY+ II++PMDL T++
Sbjct: 6 RRRTDPMVT--LSSILESIINDMRDLPNTYPFHTPVN-AKV-VKDYYKIITRPMDLQTLR 61
Query: 156 TRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSE 215
+ + LY +EF + L N+ YN P++++ +++Q + +L D K K E+K +
Sbjct: 62 ENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKL-AR 120
Query: 216 VPKA---------------GLGKILSGKMMEVNDT 235
+ KA L I++ KMM V D+
Sbjct: 121 LEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDS 155
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 112 SVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA 171
+++ + +M P W F+ PV+ K +PDY+ +I P+DL T++ + ++ Y + F+
Sbjct: 33 NIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLD 90
Query: 172 DVRLTFSNAMLYNPPENNVHKMAQELNNL 200
DV L +N++ YN PE+ K AQE+ N+
Sbjct: 91 DVNLILANSVKYNGPESQYTKTAQEIVNI 119
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 97 KDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKT 156
K K P+ + IL+ + H + W F PV + + P Y+ +I PMDL T+
Sbjct: 6 KSKEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSE 63
Query: 157 RLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201
RL Y F+AD++ F+N YNPPE+ +K A L F
Sbjct: 64 RLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFF 108
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFV 170
CS+IL + H W F PV+ +KL +P Y +I KPMD T++ +L Y + F
Sbjct: 15 CSMILTEMETHEDAWPFLLPVN-LKL-VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFA 72
Query: 171 ADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKW 205
DVRL F N +N ++++ + + F+ KW
Sbjct: 73 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 107
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
IL+ + H + W F PV + + P Y+ +I PMDL T+ RL Y F+AD+
Sbjct: 21 ILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADL 78
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFDIKWK 206
+ F+N YNPPE+ +K A L F K K
Sbjct: 79 QRVFTNCKEYNPPESEYYKCANILEKFFFSKIK 111
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 110 QCSVILKSLMM----HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSV 165
Q LK+L+ HP+ W F PV K + PDY+ +I P+DL T+ RL Y
Sbjct: 7 QLYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYVT 64
Query: 166 SDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWK 206
FVAD++ +N YNPP++ + A L F K K
Sbjct: 65 RKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLK 105
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
+L + HP+ W F PV K + PDY+ +I P+DL T+ RL Y FVAD+
Sbjct: 11 LLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADL 68
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFDIKWK 206
+ +N YNPP++ + A L F K K
Sbjct: 69 QRVIANCREYNPPDSEYCRCASALEKFFYFKLK 101
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 110 QCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR---NLYSVS 166
+C +L L H F +PV IP+Y+ II KPMDL TVK +L + Y +
Sbjct: 85 KCERLLLYLYCHELSIEFQ---EPVPASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIP 141
Query: 167 DEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAG--LGKI 224
D+FVADVRL F N + N + K+ Q + +I K+ SEV +AG +
Sbjct: 142 DDFVADVRLIFKNCERF----NEMMKVVQVYADTQEINLKA-----DSEVAQAGKAVALY 192
Query: 225 LSGKMMEVNDTR 236
K+ E+ R
Sbjct: 193 FEDKLTEIYSDR 204
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 99 KRPKMDRGV-THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTR 157
K+PK D CS+IL + H W F PV+ +KL +P Y +I KPMD T++ +
Sbjct: 5 KKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVN-LKL-VPGYKKVIKKPMDFSTIREK 62
Query: 158 LDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKW 205
L Y + F DVRL F N +N ++++ + + F+ KW
Sbjct: 63 LSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 110
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 110 QCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEF 169
QC ++ + F +PVD V + PDY II PMD GTV+ LD Y EF
Sbjct: 14 QCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEF 71
Query: 170 VADVRLTFSNAMLYNP-PENNVHKMAQELNNLFDIKWKSL 208
D+RL FSNA Y P + ++ M L+ LF+ K K +
Sbjct: 72 CKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKI 111
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
++ SL + G +F + VD K + PDY+ +I P +KT+L + Y+ EFV DV
Sbjct: 29 LILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDV 88
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLFD 202
+L F N LYN + V + + F+
Sbjct: 89 QLIFDNCSLYNTSNSVVAITGKNIETYFN 117
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 114 ILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADV 173
+L + H W F PVD P+Y+ II PMD+ +++ +L+ LY +EFV D+
Sbjct: 24 VLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDM 81
Query: 174 RLTFSNAMLYNPPENNVHKMAQELNNLF 201
+ F N YN + KM+ L F
Sbjct: 82 KTMFRNCRKYNGESSEYTKMSDNLERCF 109
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 126 VFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185
VF +PVDP ++PDY ++I +PMDL +V +++D + Y +++ D+ L SNA+ YNP
Sbjct: 30 VFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 110 QCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEF 169
QC +L + F +PVD L+ PDY II PMD TV+ L+ Y E
Sbjct: 25 QCEELLNLIFQCEDSEPFRQPVD--LLEYPDYRDIIDTPMDFATVRETLEAGNYESPMEL 82
Query: 170 VADVRLTFSNAMLYNPPE-NNVHKMAQELNNLFD 202
DVRL FSN+ Y P + + ++ M+ L+ F+
Sbjct: 83 CKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFE 116
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 126 VFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185
+F++PVD ++ DY +I +PMDL TV T++D++ Y + +F+ D+ L SNA+ YNP
Sbjct: 32 IFSKPVDIE--EVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 89
Query: 186 PEN 188
++
Sbjct: 90 DKD 92
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 7/60 (11%)
Query: 126 VFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185
+F++PV DY +I +PMDL TV T++D++ Y + +F+ D+ L SNA+ YNP
Sbjct: 32 IFSKPV-------SDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 122 PAGWVFNRPV-DPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180
P G+ F PV D + P Y II PMD GT+K ++ N Y EF AD +L NA
Sbjct: 30 PHGF-FAFPVTDAIA---PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNA 85
Query: 181 MLYNPPENNVHKMAQEL 197
M YN P+ +K+A+++
Sbjct: 86 MTYNRPDTVYYKLAKKI 102
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P K+ PDY++II +P+DL T+ R+ Y D+ L NA YN P + V K
Sbjct: 40 PSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFK 99
Query: 193 MAQELNNLFDIKWKSLE 209
A + +F +K +E
Sbjct: 100 DANSIKKIFYMKKAEIE 116
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P K+ PDY++II +P+DL T+ R+ Y D+ L NA YN P + V K
Sbjct: 39 PSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFK 98
Query: 193 MAQELNNLFDIKWKSLE 209
A + +F +K +E
Sbjct: 99 DANSIKKIFYMKKAEIE 115
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 131 VDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190
V P K D PDY+ II +PMDL ++ + + Y+ + + D++L F NA YN + V
Sbjct: 54 VKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQV 113
Query: 191 HKMAQELNNLFDIKWKSL 208
+ A L L K K L
Sbjct: 114 YNDAHILEKLLKEKRKEL 131
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P K+ PDY++II +P+DL T+ R+ Y D+ L NA YN P + V K
Sbjct: 37 PSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFK 96
Query: 193 MAQELNNLFDIKWKSLE 209
A + +F +K +E
Sbjct: 97 DANSIKKIFYMKKAEIE 113
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 137 DIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQE 196
++P+Y+ I+ PM L VK L+ YS +F+ D+ L F NA ++N P ++K A
Sbjct: 242 ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 301
Query: 197 LNNLFD 202
L N F+
Sbjct: 302 LTNYFN 307
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P + ++PDY+ I KPMD+ +++ + N Y D V D + F+NA YN PE+ ++K
Sbjct: 46 PSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYK 105
Query: 193 MAQELNNLF 201
A L+ +
Sbjct: 106 DALVLHKVL 114
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 137 DIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQE 196
++P+Y+ I+ PM L VK L+ YS +F+ D+ L F NA ++N P ++K A
Sbjct: 227 ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATT 286
Query: 197 LNNLFD 202
L N F+
Sbjct: 287 LTNYFN 292
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P + ++PDY+ I KPMD+ +++ + N Y D V D + F+NA YN PE+ ++K
Sbjct: 46 PSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYK 105
Query: 193 MAQELNNLF 201
A L+ +
Sbjct: 106 DALVLHKVL 114
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 115 LKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVR 174
L+ L G +F+ PV P+ ++PDY I KPMD T+K L+ Y D+F D
Sbjct: 16 LEQLQEKDTGNIFSEPV-PLS-EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFN 73
Query: 175 LTFSNAMLYNPPENNVHKMAQEL 197
L SN + YN + ++ A L
Sbjct: 74 LIVSNCLKYNAKDTIFYRAAVRL 96
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P K PDY+ I P+ L ++T+L Y D D+ L F NA YN P + ++K
Sbjct: 48 PSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYK 107
Query: 193 MAQELNNLFDIKWKSL 208
+L + K K L
Sbjct: 108 RVLKLQQVMQAKKKEL 123
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 122 PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181
P+ + F+ PV P Y II PMD T+K ++ N Y +E + +L +NAM
Sbjct: 25 PSAF-FSFPV--TDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAM 81
Query: 182 LYNPPENNVHKMAQEL 197
+YN PE +K A++L
Sbjct: 82 IYNKPETIYYKAAKKL 97
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P + + PDY+ ++S+P+DL ++ +L Y + AD +L F+NA Y P++ +K
Sbjct: 36 PKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYK 95
Query: 193 MAQELNNLF 201
A +L +L+
Sbjct: 96 AACKLWDLY 104
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 137 DIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQE 196
++P+Y+ I+ P L VK L+ YS +F+ D L F NA ++N P ++K A
Sbjct: 186 ELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATT 245
Query: 197 LNNLFD 202
L N F+
Sbjct: 246 LTNYFN 251
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 137 DIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQE 196
++P+Y+ I+ P L VK L+ YS +F+ D L F NA ++N P ++K A
Sbjct: 192 ELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATT 251
Query: 197 LNNLFD 202
L N F+
Sbjct: 252 LTNYFN 257
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 133 PVKL-DIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVH 191
PV L ++PDY I PMD T++ RL+ Y EF D L N M YN + +
Sbjct: 37 PVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFY 96
Query: 192 KMAQELNN 199
+ A L +
Sbjct: 97 RAAVRLRD 104
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P + ++P+Y+ +I KP+D +K R+ + Y ++ DV L NA +N + +++
Sbjct: 43 PSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYE 102
Query: 193 MAQELNNLFDIKWKSLEEKWSSE 215
+ L ++F + +E++ SE
Sbjct: 103 DSIVLQSVFTSVRQKIEKEDDSE 125
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192
P + ++P+Y+ +I KP+D +K R+ + Y + DV L NA +N + +++
Sbjct: 44 PSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYE 103
Query: 193 MAQELNNLF 201
+ L ++F
Sbjct: 104 DSIVLQSVF 112
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184
P + ++P+Y+ +I KP+D +K R+ + Y ++ DV L NA +N
Sbjct: 44 PSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 95
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184
P + ++P+Y+ +I KP+D +K R+ + Y ++ DV L NA +N
Sbjct: 39 PSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 90
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 133 PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183
P K DY+ IS P+DL T++ ++ Y + F AD+ F NA Y
Sbjct: 40 PPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90
>pdb|1J1T|A Chain A, Alginate Lyase From Alteromonas Sp.272
Length = 233
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 43 WRHSSSVAESNQLMMSKPYR----------SSGGKKMIASEHSKERSSI 81
WRH V ES ++ M++ Y S GGK +I+ H+ + +I
Sbjct: 51 WRHEYKVKESLRVAMTQTYEVFEATVKVEMSDGGKTIISQHHASDTGTI 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,094,199
Number of Sequences: 62578
Number of extensions: 607071
Number of successful extensions: 1040
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 83
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)