Query 007584
Match_columns 597
No_of_seqs 326 out of 1451
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 1.9E-30 4.2E-35 292.9 21.4 396 100-533 216-625 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 6.1E-27 1.3E-31 213.5 13.1 107 105-213 4-111 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1.5E-26 3.3E-31 207.3 13.4 105 105-209 2-107 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 1.2E-26 2.6E-31 207.8 12.7 100 109-208 8-107 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 4.5E-26 9.7E-31 200.8 11.2 95 108-204 2-96 (97)
6 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.2E-25 2.6E-30 197.7 11.1 96 108-205 2-97 (97)
7 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.6E-25 5.6E-30 197.4 12.4 102 103-204 1-102 (103)
8 cd05507 Bromo_brd8_like Bromod 99.9 2.7E-25 5.9E-30 197.9 12.3 101 105-207 2-102 (104)
9 cd05506 Bromo_plant1 Bromodoma 99.9 1.9E-25 4.2E-30 196.1 11.1 98 108-205 2-99 (99)
10 cd05504 Bromo_Acf1_like Bromod 99.9 2.8E-25 6.2E-30 201.3 12.5 103 105-209 11-113 (115)
11 cd05502 Bromo_tif1_like Bromod 99.9 5.3E-25 1.1E-29 197.3 13.4 104 103-209 1-107 (109)
12 cd05498 Bromo_Brdt_II_like Bro 99.9 3.9E-25 8.4E-30 195.4 11.1 98 108-205 2-102 (102)
13 cd05510 Bromo_SPT7_like Bromod 99.9 7E-25 1.5E-29 198.0 11.7 103 105-209 6-110 (112)
14 cd05499 Bromo_BDF1_2_II Bromod 99.9 7.6E-25 1.7E-29 193.8 11.3 98 108-205 2-102 (102)
15 cd05501 Bromo_SP100C_like Brom 99.9 1.3E-24 2.9E-29 193.2 12.6 97 107-208 3-99 (102)
16 cd05508 Bromo_RACK7 Bromodomai 99.9 1E-24 2.2E-29 193.0 11.6 96 106-204 3-98 (99)
17 cd05509 Bromo_gcn5_like Bromod 99.9 1.2E-24 2.7E-29 191.8 11.9 100 107-208 2-101 (101)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 3.4E-24 7.3E-29 191.9 11.0 100 107-208 2-107 (107)
19 cd05511 Bromo_TFIID Bromodomai 99.9 7.6E-24 1.6E-28 191.1 12.0 103 109-213 3-105 (112)
20 cd05528 Bromo_AAA Bromodomain; 99.9 1E-23 2.2E-28 190.4 11.6 104 105-210 2-109 (112)
21 cd05513 Bromo_brd7_like Bromod 99.9 1.1E-23 2.4E-28 186.0 11.0 92 108-201 3-94 (98)
22 cd05512 Bromo_brd1_like Bromod 99.9 2.3E-23 4.9E-28 183.9 11.1 92 108-201 3-94 (98)
23 cd05515 Bromo_polybromo_V Brom 99.9 9.5E-23 2.1E-27 181.9 11.0 97 108-206 2-104 (105)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 1.1E-22 2.4E-27 180.6 10.5 96 108-205 2-103 (103)
25 cd05524 Bromo_polybromo_I Brom 99.9 1.7E-22 3.7E-27 182.7 11.3 100 108-209 4-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 4.8E-22 1E-26 183.4 13.3 106 101-207 19-127 (128)
27 cd05520 Bromo_polybromo_III Br 99.9 2.5E-22 5.3E-27 178.9 10.4 92 111-204 5-102 (103)
28 smart00297 BROMO bromo domain. 99.9 5.3E-22 1.2E-26 174.7 12.1 101 105-207 6-106 (107)
29 cd05517 Bromo_polybromo_II Bro 99.9 3.4E-22 7.3E-27 178.0 10.3 94 108-203 2-101 (103)
30 cd05518 Bromo_polybromo_IV Bro 99.9 4.6E-22 1E-26 177.2 10.3 94 109-204 3-102 (103)
31 cd05525 Bromo_ASH1 Bromodomain 99.9 7.1E-22 1.5E-26 176.9 11.3 96 107-204 3-104 (106)
32 PF00439 Bromodomain: Bromodom 99.8 6.3E-21 1.4E-25 161.0 9.6 84 111-196 1-84 (84)
33 cd04369 Bromodomain Bromodomai 99.8 9.2E-21 2E-25 161.4 10.0 96 108-205 2-99 (99)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.8 9.9E-21 2.1E-25 168.7 10.6 94 109-204 4-103 (104)
35 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.9E-20 4.1E-25 168.6 12.2 99 111-209 5-107 (109)
36 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 3.5E-20 7.5E-25 166.0 11.1 94 108-205 3-102 (106)
37 COG5076 Transcription factor i 99.7 7.9E-18 1.7E-22 179.7 12.3 149 122-274 164-312 (371)
38 cd05526 Bromo_polybromo_VI Bro 99.7 2E-17 4.3E-22 149.2 11.2 100 106-209 3-108 (110)
39 KOG1245 Chromatin remodeling c 99.7 2.2E-17 4.8E-22 198.6 8.1 95 111-208 1306-1400(1404)
40 KOG0008 Transcription initiati 99.6 4.2E-15 9.1E-20 173.3 8.8 166 108-277 1263-1434(1563)
41 KOG1472 Histone acetyltransfer 99.5 6.1E-14 1.3E-18 158.5 6.2 102 106-209 606-707 (720)
42 cd05494 Bromodomain_1 Bromodom 99.3 2.8E-12 6.1E-17 116.5 4.8 79 107-185 4-89 (114)
43 KOG0008 Transcription initiati 99.3 1E-12 2.2E-17 153.9 1.8 157 53-211 1326-1485(1563)
44 KOG0386 Chromatin remodeling c 99.0 4.3E-10 9.2E-15 129.9 7.6 163 41-210 964-1132(1157)
45 cd05491 Bromo_TBP7_like Bromod 98.9 8.1E-10 1.7E-14 100.9 4.8 42 146-187 62-103 (119)
46 KOG0955 PHD finger protein BR1 98.9 1.3E-09 2.8E-14 128.4 7.7 102 108-211 567-668 (1051)
47 KOG1827 Chromatin remodeling c 98.9 7.4E-09 1.6E-13 116.4 9.9 103 102-206 48-156 (629)
48 KOG1474 Transcription initiati 98.5 1.5E-08 3.3E-13 115.9 0.2 93 116-208 2-94 (640)
49 KOG1472 Histone acetyltransfer 98.5 9.2E-08 2E-12 109.2 4.6 77 103-188 290-366 (720)
50 KOG1828 IRF-2-binding protein 98.0 1.3E-06 2.7E-11 93.3 -0.6 95 111-207 24-118 (418)
51 KOG1828 IRF-2-binding protein 97.9 1.1E-05 2.4E-10 86.2 4.1 84 113-199 215-298 (418)
52 COG5076 Transcription factor i 97.8 2.4E-06 5.3E-11 91.9 -2.2 94 113-208 270-363 (371)
53 KOG1029 Endocytic adaptor prot 97.2 0.0014 3E-08 75.4 9.2 87 420-517 311-410 (1118)
54 PTZ00266 NIMA-related protein 96.9 0.012 2.7E-07 71.0 14.4 32 162-201 206-237 (1021)
55 cd05493 Bromo_ALL-1 Bromodomai 95.9 0.014 3E-07 54.9 5.6 66 148-213 59-124 (131)
56 PTZ00266 NIMA-related protein 95.6 0.04 8.6E-07 66.8 9.2 31 463-493 469-499 (1021)
57 KOG0163 Myosin class VI heavy 95.6 0.041 8.9E-07 63.7 8.5 30 453-482 931-960 (1259)
58 PLN03086 PRLI-interacting fact 95.5 0.02 4.2E-07 65.3 5.6 74 462-535 9-86 (567)
59 KOG1029 Endocytic adaptor prot 92.9 0.64 1.4E-05 54.5 10.5 12 420-431 326-337 (1118)
60 KOG1144 Translation initiation 90.9 0.88 1.9E-05 53.5 8.7 19 462-480 227-245 (1064)
61 KOG3054 Uncharacterized conser 89.2 1.6 3.5E-05 45.2 8.1 37 497-533 161-207 (299)
62 KOG0644 Uncharacterized conser 89.1 0.28 6.2E-06 57.7 3.0 61 145-205 1050-1110(1113)
63 PTZ00121 MAEBL; Provisional 88.5 2 4.4E-05 53.6 9.5 16 430-445 1120-1135(2084)
64 KOG1144 Translation initiation 87.0 2.3 5E-05 50.2 8.5 34 458-491 231-264 (1064)
65 COG5269 ZUO1 Ribosome-associat 87.0 3 6.5E-05 44.0 8.6 96 443-543 216-323 (379)
66 KOG2072 Translation initiation 86.7 2.5 5.4E-05 50.2 8.6 41 443-485 568-610 (988)
67 KOG0732 AAA+-type ATPase conta 86.4 0.37 7.9E-06 58.6 2.0 66 122-187 531-601 (1080)
68 PTZ00121 MAEBL; Provisional 85.9 4.6 9.9E-05 50.7 10.5 9 137-145 670-678 (2084)
69 PF09726 Macoilin: Transmembra 85.4 39 0.00084 40.2 17.7 44 425-469 428-474 (697)
70 KOG2891 Surface glycoprotein [ 84.7 7.7 0.00017 41.1 10.3 19 461-479 330-348 (445)
71 PF06785 UPF0242: Uncharacteri 83.9 10 0.00022 41.0 11.0 91 420-527 105-195 (401)
72 cd05497 Bromo_Brdt_I_like Brom 82.4 1.1 2.4E-05 40.5 2.8 39 239-277 20-59 (107)
73 KOG0163 Myosin class VI heavy 82.4 10 0.00022 45.0 10.9 19 193-211 477-495 (1259)
74 cd05495 Bromo_cbp_like Bromodo 82.3 1.1 2.4E-05 40.5 2.7 38 240-277 20-58 (108)
75 PF05672 MAP7: MAP7 (E-MAP-115 81.4 10 0.00022 37.5 9.2 18 479-496 114-131 (171)
76 KOG3054 Uncharacterized conser 81.0 7.5 0.00016 40.5 8.4 13 505-517 158-170 (299)
77 cd05508 Bromo_RACK7 Bromodomai 81.0 1.1 2.5E-05 40.0 2.3 37 240-277 18-54 (99)
78 PRK06569 F0F1 ATP synthase sub 80.6 16 0.00035 35.6 10.1 81 438-520 36-120 (155)
79 KOG2002 TPR-containing nuclear 80.4 6.7 0.00015 47.5 8.9 17 482-498 850-866 (1018)
80 KOG4364 Chromatin assembly fac 79.7 11 0.00023 44.1 9.9 10 587-596 453-462 (811)
81 PF06936 Selenoprotein_S: Sele 79.3 7.2 0.00016 39.1 7.5 19 450-468 68-86 (190)
82 cd05496 Bromo_WDR9_II Bromodom 79.1 3.2 7E-05 38.4 4.7 37 240-277 21-57 (119)
83 KOG4661 Hsp27-ERE-TATA-binding 78.3 9.4 0.0002 43.9 8.7 11 526-536 692-702 (940)
84 TIGR03825 FliH_bacil flagellar 78.3 8.5 0.00019 39.7 8.0 81 431-511 4-92 (255)
85 cd05492 Bromo_ZMYND11 Bromodom 76.2 2.1 4.6E-05 39.1 2.6 39 239-277 16-58 (109)
86 PF03154 Atrophin-1: Atrophin- 75.6 1.5 3.2E-05 52.8 1.8 38 473-511 588-625 (982)
87 cd05507 Bromo_brd8_like Bromod 75.1 2.3 5E-05 38.1 2.5 38 239-277 18-55 (104)
88 cd05505 Bromo_WSTF_like Bromod 74.1 2.6 5.6E-05 37.5 2.6 36 240-276 16-51 (97)
89 PF09802 Sec66: Preprotein tra 73.8 65 0.0014 32.5 12.5 42 417-458 64-112 (190)
90 cd05494 Bromodomain_1 Bromodom 73.5 3 6.4E-05 38.3 2.8 38 239-276 18-56 (114)
91 KOG2072 Translation initiation 70.8 19 0.00041 43.2 9.0 21 474-494 797-817 (988)
92 PF07946 DUF1682: Protein of u 70.5 18 0.00039 38.7 8.4 16 425-443 235-250 (321)
93 PF05262 Borrelia_P83: Borreli 69.7 19 0.00042 41.0 8.7 9 433-441 204-212 (489)
94 PLN03086 PRLI-interacting fact 69.5 7.2 0.00016 45.1 5.3 23 443-465 8-30 (567)
95 PF07946 DUF1682: Protein of u 68.2 22 0.00048 38.0 8.5 28 419-446 250-277 (321)
96 PRK00409 recombination and DNA 67.1 27 0.00059 41.9 9.7 20 150-169 70-89 (782)
97 cd05510 Bromo_SPT7_like Bromod 66.6 4.3 9.3E-05 37.1 2.3 36 240-276 24-59 (112)
98 cd05528 Bromo_AAA Bromodomain; 66.5 4.9 0.00011 36.7 2.7 36 240-276 19-54 (112)
99 PF05672 MAP7: MAP7 (E-MAP-115 66.2 40 0.00086 33.5 9.0 21 417-437 15-35 (171)
100 KOG3654 Uncharacterized CH dom 65.7 32 0.0007 39.2 9.1 13 523-535 454-466 (708)
101 KOG2891 Surface glycoprotein [ 64.8 32 0.0007 36.6 8.5 9 528-536 396-404 (445)
102 KOG2412 Nuclear-export-signal 64.3 28 0.00061 40.0 8.5 37 457-493 199-241 (591)
103 cd05513 Bromo_brd7_like Bromod 64.3 5.9 0.00013 35.4 2.7 35 241-276 18-52 (98)
104 PLN02316 synthase/transferase 63.1 15 0.00033 45.4 6.7 38 458-497 259-296 (1036)
105 cd05502 Bromo_tif1_like Bromod 62.7 6.1 0.00013 35.6 2.6 36 240-277 20-55 (109)
106 PF06936 Selenoprotein_S: Sele 62.5 36 0.00078 34.2 8.1 13 500-512 107-119 (190)
107 cd05503 Bromo_BAZ2A_B_like Bro 62.0 6.2 0.00013 34.8 2.4 36 240-276 16-51 (97)
108 PRK06568 F0F1 ATP synthase sub 59.2 82 0.0018 30.6 9.7 9 440-448 32-40 (154)
109 PF15437 PGBA_C: Plasminogen-b 59.2 39 0.00083 29.8 6.6 43 468-513 40-82 (86)
110 cd05511 Bromo_TFIID Bromodomai 59.2 7.1 0.00015 35.5 2.3 36 240-276 16-51 (112)
111 cd05500 Bromo_BDF1_2_I Bromodo 59.2 8.5 0.00018 34.3 2.8 39 239-277 19-58 (103)
112 CHL00118 atpG ATP synthase CF0 58.1 1.2E+02 0.0025 29.0 10.5 8 441-448 51-58 (156)
113 cd05512 Bromo_brd1_like Bromod 56.8 9 0.00019 34.1 2.5 36 240-276 17-52 (98)
114 KOG2357 Uncharacterized conser 55.7 37 0.00079 37.9 7.3 14 200-213 138-151 (440)
115 PRK08476 F0F1 ATP synthase sub 55.3 1.4E+02 0.0029 28.3 10.3 8 440-447 35-42 (141)
116 cd05506 Bromo_plant1 Bromodoma 55.0 12 0.00025 32.9 3.0 36 241-276 17-53 (99)
117 PTZ00491 major vault protein; 54.6 47 0.001 40.2 8.5 47 507-554 771-817 (850)
118 PF06637 PV-1: PV-1 protein (P 54.4 69 0.0015 35.6 9.0 75 437-522 292-382 (442)
119 cd05529 Bromo_WDR9_I_like Brom 53.8 13 0.00028 34.7 3.1 40 238-277 41-80 (128)
120 PRK06568 F0F1 ATP synthase sub 53.7 1.5E+02 0.0032 28.9 10.4 11 502-512 110-120 (154)
121 PF06637 PV-1: PV-1 protein (P 52.6 1.1E+02 0.0024 34.0 10.2 51 452-502 289-339 (442)
122 cd05509 Bromo_gcn5_like Bromod 52.1 11 0.00023 33.4 2.2 36 240-276 17-52 (101)
123 TIGR01069 mutS2 MutS2 family p 52.0 65 0.0014 38.8 9.3 8 438-445 497-504 (771)
124 PRK07352 F0F1 ATP synthase sub 51.3 1.6E+02 0.0035 28.5 10.5 11 438-448 45-55 (174)
125 PRK06231 F0F1 ATP synthase sub 51.2 1.5E+02 0.0033 29.8 10.6 11 438-448 74-84 (205)
126 cd05504 Bromo_Acf1_like Bromod 51.0 12 0.00025 34.4 2.3 35 241-276 29-63 (115)
127 KOG3634 Troponin [Cytoskeleton 50.4 35 0.00077 37.0 6.1 25 452-476 86-110 (361)
128 CHL00019 atpF ATP synthase CF0 49.5 1.3E+02 0.0027 29.6 9.5 14 435-448 47-60 (184)
129 TIGR03321 alt_F1F0_F0_B altern 49.5 1.6E+02 0.0034 30.3 10.6 7 526-532 152-158 (246)
130 KOG1827 Chromatin remodeling c 49.1 2.2 4.7E-05 49.6 -3.3 74 125-200 214-287 (629)
131 PRK09174 F0F1 ATP synthase sub 49.0 1.2E+02 0.0026 30.7 9.3 44 438-483 79-124 (204)
132 PF15236 CCDC66: Coiled-coil d 48.6 2.2E+02 0.0048 27.9 10.7 15 459-473 70-84 (157)
133 KOG3654 Uncharacterized CH dom 48.4 61 0.0013 37.1 7.7 6 428-433 393-398 (708)
134 KOG2002 TPR-containing nuclear 48.4 1.1E+02 0.0024 37.7 10.2 14 450-463 797-811 (1018)
135 PRK13453 F0F1 ATP synthase sub 48.3 1.5E+02 0.0033 28.8 9.8 9 440-448 46-54 (173)
136 KOG1363 Predicted regulator of 47.9 51 0.0011 37.4 7.2 9 557-565 400-408 (460)
137 PF03879 Cgr1: Cgr1 family; I 47.7 2.1E+02 0.0046 26.4 9.9 44 433-491 38-81 (108)
138 KOG2133 Transcriptional corepr 47.5 13 0.00028 45.1 2.5 45 469-513 816-861 (1229)
139 cd05499 Bromo_BDF1_2_II Bromod 47.1 15 0.00033 32.5 2.4 38 240-277 19-57 (102)
140 PRK08476 F0F1 ATP synthase sub 47.0 1.6E+02 0.0035 27.8 9.4 12 499-510 99-110 (141)
141 PRK14471 F0F1 ATP synthase sub 45.9 1.8E+02 0.0039 27.8 9.8 7 441-447 37-43 (164)
142 cd05498 Bromo_Brdt_II_like Bro 45.6 19 0.0004 31.9 2.7 38 240-277 19-57 (102)
143 PRK14474 F0F1 ATP synthase sub 45.2 1.6E+02 0.0035 30.5 9.9 9 440-448 33-41 (250)
144 PF12037 DUF3523: Domain of un 45.0 1.9E+02 0.0041 30.9 10.4 25 461-485 128-152 (276)
145 PF07888 CALCOCO1: Calcium bin 44.7 2.4E+02 0.0052 32.9 11.9 103 429-534 334-450 (546)
146 PF09731 Mitofilin: Mitochondr 44.2 1.9E+02 0.0041 33.3 11.2 6 528-533 377-382 (582)
147 PF14372 DUF4413: Domain of un 43.5 83 0.0018 28.0 6.6 52 160-211 3-54 (101)
148 PF09726 Macoilin: Transmembra 43.1 1.4E+02 0.0029 35.8 10.0 8 567-574 636-643 (697)
149 PF00769 ERM: Ezrin/radixin/mo 42.7 1.5E+02 0.0032 30.8 9.2 27 465-491 39-65 (246)
150 cd05501 Bromo_SP100C_like Brom 42.0 23 0.0005 32.1 2.8 23 254-276 29-51 (102)
151 PRK14473 F0F1 ATP synthase sub 41.8 2.3E+02 0.005 27.1 9.8 8 441-448 37-44 (164)
152 PRK02292 V-type ATP synthase s 41.3 3.2E+02 0.0069 26.6 10.9 9 524-532 101-109 (188)
153 KOG1363 Predicted regulator of 41.1 95 0.0021 35.3 8.0 21 516-536 397-417 (460)
154 PRK14474 F0F1 ATP synthase sub 40.4 2E+02 0.0044 29.8 9.8 6 527-532 153-158 (250)
155 PF09756 DDRGK: DDRGK domain; 40.3 9.3 0.0002 38.3 0.0 26 496-521 59-84 (188)
156 PRK01005 V-type ATP synthase s 40.1 2.9E+02 0.0063 28.1 10.6 10 524-533 107-116 (207)
157 PRK12705 hypothetical protein; 40.1 4.9E+02 0.011 30.1 13.5 10 528-537 129-138 (508)
158 PRK13454 F0F1 ATP synthase sub 39.4 2.5E+02 0.0054 27.6 9.8 11 438-448 57-67 (181)
159 PRK13460 F0F1 ATP synthase sub 38.9 2.6E+02 0.0057 27.1 9.8 9 440-448 44-52 (173)
160 PF05278 PEARLI-4: Arabidopsis 38.5 3.4E+02 0.0073 28.9 11.0 22 507-529 234-255 (269)
161 PF15236 CCDC66: Coiled-coil d 38.1 2.4E+02 0.0053 27.7 9.2 16 461-476 82-97 (157)
162 PF14943 MRP-S26: Mitochondria 38.1 2.9E+02 0.0063 27.3 9.9 26 420-445 20-56 (170)
163 PRK06231 F0F1 ATP synthase sub 37.9 4.4E+02 0.0095 26.6 13.1 9 437-445 85-93 (205)
164 KOG1245 Chromatin remodeling c 37.9 20 0.00043 45.8 2.2 42 241-283 1318-1359(1404)
165 PRK13461 F0F1 ATP synthase sub 37.5 3E+02 0.0065 26.1 9.8 9 440-448 33-41 (159)
166 cd05516 Bromo_SNF2L2 Bromodoma 37.4 19 0.00041 32.5 1.5 34 242-276 25-58 (107)
167 PRK14472 F0F1 ATP synthase sub 37.1 2.9E+02 0.0063 26.8 9.8 10 439-448 45-54 (175)
168 cd05515 Bromo_polybromo_V Brom 37.0 21 0.00046 32.0 1.7 36 240-276 22-57 (105)
169 CHL00118 atpG ATP synthase CF0 36.6 3.8E+02 0.0083 25.5 10.4 18 496-513 111-128 (156)
170 smart00297 BROMO bromo domain. 36.3 62 0.0013 28.1 4.6 34 242-276 25-58 (107)
171 PF05914 RIB43A: RIB43A; Inte 36.1 2.4E+02 0.0051 31.3 9.9 58 418-480 3-65 (379)
172 PTZ00399 cysteinyl-tRNA-synthe 35.7 73 0.0016 37.7 6.3 14 455-468 548-561 (651)
173 PRK08475 F0F1 ATP synthase sub 35.6 4.2E+02 0.0091 25.7 11.3 7 441-447 51-57 (167)
174 PF03154 Atrophin-1: Atrophin- 35.1 23 0.0005 43.1 2.1 40 478-517 588-627 (982)
175 PF10252 PP28: Casein kinase s 35.1 1.9E+02 0.004 25.6 7.1 34 455-488 21-55 (82)
176 cd05520 Bromo_polybromo_III Br 34.9 24 0.00053 31.6 1.8 37 240-277 22-58 (103)
177 PF12848 ABC_tran_2: ABC trans 34.7 2.7E+02 0.0059 23.2 8.4 25 462-486 20-44 (85)
178 PRK11546 zraP zinc resistance 34.6 2.1E+02 0.0045 27.8 8.0 55 417-471 40-102 (143)
179 PF15346 ARGLU: Arginine and g 34.1 3.8E+02 0.0081 26.2 9.7 8 486-493 93-100 (149)
180 TIGR02606 antidote_CC2985 puta 33.9 65 0.0014 27.0 4.1 27 152-178 12-38 (69)
181 PRK14475 F0F1 ATP synthase sub 33.6 3.6E+02 0.0079 26.0 9.8 11 438-448 36-46 (167)
182 PRK07353 F0F1 ATP synthase sub 33.2 3.9E+02 0.0085 24.6 10.5 7 441-447 34-40 (140)
183 TIGR00570 cdk7 CDK-activating 32.8 2.1E+02 0.0046 31.0 8.6 16 418-433 65-80 (309)
184 KOG0644 Uncharacterized conser 32.6 18 0.0004 43.4 0.8 70 128-200 87-186 (1113)
185 cd05525 Bromo_ASH1 Bromodomain 32.5 78 0.0017 28.6 4.6 34 242-276 26-59 (106)
186 PRK07352 F0F1 ATP synthase sub 32.4 4.5E+02 0.0097 25.4 10.2 7 438-444 57-63 (174)
187 PRK09173 F0F1 ATP synthase sub 32.3 4E+02 0.0088 25.2 9.8 9 440-448 30-38 (159)
188 PRK13428 F0F1 ATP synthase sub 31.9 2.8E+02 0.006 31.3 9.8 10 526-535 149-158 (445)
189 PF05262 Borrelia_P83: Borreli 31.8 1.1E+02 0.0024 35.0 6.7 10 526-535 332-341 (489)
190 KOG1150 Predicted molecular ch 31.2 6.1E+02 0.013 26.3 11.5 8 424-431 88-95 (250)
191 TIGR01144 ATP_synt_b ATP synth 30.7 4.4E+02 0.0096 24.4 10.5 9 440-448 23-31 (147)
192 PF02841 GBP_C: Guanylate-bind 30.4 2.2E+02 0.0047 30.0 8.3 29 459-487 215-243 (297)
193 TIGR01069 mutS2 MutS2 family p 30.1 2.8E+02 0.006 33.6 10.0 13 420-432 493-505 (771)
194 KOG4722 Zn-finger protein [Gen 29.3 1.8E+02 0.0039 32.8 7.5 28 475-502 401-428 (672)
195 cd05524 Bromo_polybromo_I Brom 28.8 41 0.00089 30.7 2.2 26 252-277 35-60 (113)
196 PF15346 ARGLU: Arginine and g 28.6 3E+02 0.0065 26.9 8.1 9 432-440 20-28 (149)
197 PRK13455 F0F1 ATP synthase sub 28.3 4.8E+02 0.011 25.4 9.8 10 439-448 54-63 (184)
198 cd05521 Bromo_Rsc1_2_I Bromodo 27.9 43 0.00093 30.3 2.2 35 242-277 25-59 (106)
199 cd05517 Bromo_polybromo_II Bro 27.7 40 0.00087 30.2 1.9 33 243-276 25-57 (103)
200 PF13863 DUF4200: Domain of un 27.2 4.6E+02 0.01 23.6 11.2 21 496-516 74-94 (126)
201 PF15402 Spc7_N: N-terminus of 27.1 73 0.0016 39.1 4.5 35 460-500 137-172 (927)
202 PRK13428 F0F1 ATP synthase sub 27.0 3.5E+02 0.0075 30.5 9.5 15 524-538 143-158 (445)
203 KOG4691 Uncharacterized conser 26.7 6.1E+02 0.013 26.0 10.0 16 455-470 95-110 (227)
204 cd03405 Band_7_HflC Band_7_Hfl 26.7 5.9E+02 0.013 25.4 10.4 13 524-536 228-240 (242)
205 TIGR01541 tape_meas_lam_C phag 26.6 2.2E+02 0.0047 31.0 7.6 22 427-451 8-29 (332)
206 TIGR01216 ATP_synt_epsi ATP sy 26.4 1.5E+02 0.0033 27.5 5.6 22 452-473 84-105 (130)
207 KOG2357 Uncharacterized conser 26.2 2.2E+02 0.0047 32.1 7.5 13 197-209 142-154 (440)
208 PF01991 vATP-synt_E: ATP synt 25.9 6E+02 0.013 24.4 11.2 9 525-533 96-104 (198)
209 PRK01005 V-type ATP synthase s 25.5 4.8E+02 0.01 26.5 9.4 13 507-519 76-88 (207)
210 PF12052 VGCC_beta4Aa_N: Volta 25.1 84 0.0018 24.3 2.9 15 503-517 24-38 (42)
211 TIGR01933 hflK HflK protein. H 25.1 7.4E+02 0.016 25.2 10.9 10 526-535 227-236 (261)
212 PF11875 DUF3395: Domain of un 24.9 3.2E+02 0.0069 26.3 7.6 7 557-563 112-118 (151)
213 cd05518 Bromo_polybromo_IV Bro 24.1 50 0.0011 29.6 1.9 32 244-276 26-57 (103)
214 TIGR01932 hflC HflC protein. H 24.1 7.3E+02 0.016 26.5 11.0 11 526-536 285-295 (317)
215 TIGR03321 alt_F1F0_F0_B altern 24.0 7.9E+02 0.017 25.2 11.3 7 441-447 34-40 (246)
216 KOG2391 Vacuolar sorting prote 22.7 6.3E+02 0.014 28.0 9.9 55 468-530 220-274 (365)
217 PF07218 RAP1: Rhoptry-associa 22.6 6.3E+02 0.014 29.9 10.3 11 478-488 247-257 (782)
218 PRK01558 V-type ATP synthase s 22.2 5.8E+02 0.013 25.4 9.2 14 507-520 71-84 (198)
219 PRK14473 F0F1 ATP synthase sub 22.2 6.9E+02 0.015 23.8 10.2 6 505-510 106-111 (164)
220 PRK00106 hypothetical protein; 22.0 6.2E+02 0.013 29.5 10.4 71 439-520 36-107 (535)
221 PRK03963 V-type ATP synthase s 21.9 7.5E+02 0.016 24.1 11.0 71 461-531 16-86 (198)
222 KOG2505 Ankyrin repeat protein 21.9 3.8E+02 0.0083 31.1 8.4 15 418-432 466-480 (591)
223 cd05519 Bromo_SNF2 Bromodomain 21.9 55 0.0012 29.1 1.7 36 241-277 23-58 (103)
224 KOG4691 Uncharacterized conser 21.8 3.7E+02 0.0079 27.5 7.4 10 511-520 164-173 (227)
225 PRK12585 putative monovalent c 21.6 2E+02 0.0043 29.3 5.6 13 458-470 129-141 (197)
226 PF03693 RHH_2: Uncharacterise 21.6 1.1E+02 0.0025 26.4 3.5 27 152-178 15-41 (80)
227 PRK05759 F0F1 ATP synthase sub 21.4 6.8E+02 0.015 23.4 9.8 10 439-448 31-40 (156)
228 KOG1150 Predicted molecular ch 20.7 2E+02 0.0044 29.6 5.5 6 455-460 150-155 (250)
229 KOG0971 Microtubule-associated 20.7 7.3E+02 0.016 31.0 10.7 21 517-537 483-505 (1243)
230 PF15437 PGBA_C: Plasminogen-b 20.7 5.1E+02 0.011 23.0 7.1 22 472-493 37-58 (86)
231 TIGR01005 eps_transp_fam exopo 20.6 1.3E+03 0.028 27.4 13.1 78 458-535 319-403 (754)
232 COG5269 ZUO1 Ribosome-associat 20.5 4.7E+02 0.01 28.2 8.2 73 441-514 235-310 (379)
233 COG3064 TolA Membrane protein 20.4 7.3E+02 0.016 27.3 9.7 23 482-504 154-176 (387)
234 PF11208 DUF2992: Protein of u 20.2 6.2E+02 0.013 24.1 8.4 13 418-430 62-74 (132)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.97 E-value=1.9e-30 Score=292.89 Aligned_cols=396 Identities=23% Similarity=0.275 Sum_probs=228.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007584 100 RPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (597)
Q Consensus 100 r~km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~N 179 (597)
..++...++++|..||..|+.|+++|||..|||+..+++||||+||++||||+||++||.++.|.++.+|..||+|||.|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhccCCcCCccccccCcccccccccCCCCCCCCCCCCCCCCcccchhh
Q 007584 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAGLGKILSGKMMEVNDTRQNCPKTPPLHSTLSSKKSKMSEE 259 (597)
Q Consensus 180 A~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~~~~~~s~~~~ei~~~~~~~~k~~P~~~~v~~K~~~~~~~ 259 (597)
|++||+++++||.||..|+.+|+.+|..++..+............... .......... .+.......+....+.
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~- 369 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMAS-SDQIPSNSVE----GPRSSSFESRESASEP- 369 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc-cccccccccc----CcccccchhcccccCc-
Confidence 999999999999999999999999999988765433222110000000 0000000000 0000000000000000
Q ss_pred hhhccccchhHHHhhhccccccc---chHHHHHhh----cCCCCCCCcccccccCCCCC--CCccccccCCCCCCCCCCC
Q 007584 260 KAARSSYCARAVEVERAKPAQNL---SSKLVIKNL----HKGTNDGGRLACNIVNAKPP--LSPVACKSCGKCGSATCGC 330 (597)
Q Consensus 260 k~l~~~~d~~~~~~~lsk~le~l---~~~~~~~~~----~k~~~~~~~~~~~~~n~~p~--~~~~~~~~~~~~~~~~~~~ 330 (597)
....+. +......-..++.+ ....+...+ .+..........+.+....+ .+... .+ ....-..
T Consensus 370 --~~~~~~-~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~ 441 (640)
T KOG1474|consen 370 --SSELMS-EEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEK--NK---KEKAANE 441 (640)
T ss_pred --cccccc-HHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhh--hc---ccccccc
Confidence 000010 01011111111111 111122221 11111111111111100000 00000 00 0000000
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCccccccccCCCCCCCCC-CCCCcccccccCCCCCCCCCCCCCCCCCcc
Q 007584 331 NLPSDSTHASSDITSERSLGGDRACSTDASKPDCQVKSTSTSQMSKSDP-DSDGAVSALDDGNLCPSSQLTPPATDSASA 409 (597)
Q Consensus 331 ~~~~~s~~~~s~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~s~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (597)
+.-.-+.... ..-..-..+. -+ ++ +..+..+.. .+ ...+.+ . .+.+.. +.. ....
T Consensus 442 ~~r~~t~~~~---~~l~~~~~~~----~~--p~---~l~~~~~~~--~~~~~~~~l---~-~~~~~~-~~~-----~~~v 497 (640)
T KOG1474|consen 442 NKRDMTAPEK---AKLKELLQNL----LP--PN---KLESIVEIL--KPEKRQLDL---S-QNDDEI-ELD-----LDSV 497 (640)
T ss_pred cccccccccc---ccchhhccCC----CC--Cc---cccCccccc--chhhhcccc---c-ccccch-hhc-----cccc
Confidence 0000000000 0000000000 00 00 000000000 00 000000 0 000000 000 0111
Q ss_pred cccCCC-CccCCCChHHHHHHHHHhhhhhHHHHhhhh-hhhcccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 410 EEWTTP-LLDVQMSPKKALRAAMLKSRFADTILKAQQ-RTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEA 487 (597)
Q Consensus 410 e~~~~~-~~~~~~sp~K~~RAA~lk~rfadtIlKA~~-k~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~ 487 (597)
++|... ....++..++.+++..+..+|++-+.+++. +.+.......+|+++.+..++.+.++..++++.++.-...+.
T Consensus 498 d~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 577 (640)
T KOG1474|consen 498 DGSQSREPSSNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLSRSISEEKLREKSEKSSSEASSSSSED 577 (640)
T ss_pred ccccccCCCcccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchhhhhhHHhhhhhhHhhhhhhhhhhHHH
Confidence 111111 125578899999999999999999999999 776666777799999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 007584 488 ASRMKAEIEL--KKQREKEREAARVALQKMERTVEIEHNLEILKELEM 533 (597)
Q Consensus 488 ~~~~~~~~~~--~~~r~~~~e~~r~~~~~~~~t~~~~~~~~~~~dle~ 533 (597)
+++.++.... .+.+..+++.++.++..|..++++..+..+..+++.
T Consensus 578 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~~~ 625 (640)
T KOG1474|consen 578 GENKAASSGSLSPSSSSLERESNNSAEANGSSSSESSSSSSSSSSEEG 625 (640)
T ss_pred HhhccccccccCccccccccchhHHHHhcccCccccccccccchhhcc
Confidence 9888776554 455678899999999999999999999998888777
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.1e-27 Score=213.52 Aligned_cols=107 Identities=36% Similarity=0.563 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
..|.++|..||..|+.|+.++||+.||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 185 PP-ENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 185 ~~-~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
++ ++.||.+|..|++.|++.+++|...|.
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 899999999999999999999998885
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.5e-26 Score=207.35 Aligned_cols=105 Identities=35% Similarity=0.606 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 007584 105 RGVTHQCSVILKSLMMH-PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~-~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~Y 183 (597)
.++.+.|..|+..|+++ +.+|+|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999 99999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 184 NPPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 184 N~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
|+++|.++.+|..|++.|++.+..+.
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.2e-26 Score=207.77 Aligned_cols=100 Identities=44% Similarity=0.747 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 007584 109 HQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEN 188 (597)
Q Consensus 109 k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S 188 (597)
-.+..||..|++|+.+|||..||++...++||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||+++|
T Consensus 8 ~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 87 (107)
T cd05497 8 YLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGD 87 (107)
T ss_pred HHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34568899999999999999999998778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007584 189 NVHKMAQELNNLFDIKWKSL 208 (597)
Q Consensus 189 ~I~~~A~~Lek~Fek~~k~i 208 (597)
.++.+|..|++.|++.+.++
T Consensus 88 ~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 88 DVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998764
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.5e-26 Score=200.83 Aligned_cols=95 Identities=29% Similarity=0.473 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
+++|..||+.|++++.+++|..||++. .+||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 007584 188 NNVHKMAQELNNLFDIK 204 (597)
Q Consensus 188 S~I~~~A~~Lek~Fek~ 204 (597)
|.|+.+|..|++.|.+.
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.2e-25 Score=197.66 Aligned_cols=96 Identities=32% Similarity=0.704 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
+..|..||..|+.|+.+++|+.||++. .+|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999987 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 007584 188 NNVHKMAQELNNLFDIKW 205 (597)
Q Consensus 188 S~I~~~A~~Lek~Fek~~ 205 (597)
+.++.+|..|++.|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999876
No 7
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.6e-25 Score=197.38 Aligned_cols=102 Identities=38% Similarity=0.625 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 007584 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (597)
Q Consensus 103 m~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~ 182 (597)
|++.+.++|..||+.|++++.+++|..||+|....+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 1 ~t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLT 80 (103)
T ss_pred CCHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999998878999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 007584 183 YNPPENNVHKMAQELNNLFDIK 204 (597)
Q Consensus 183 YN~~~S~I~~~A~~Lek~Fek~ 204 (597)
||+++|.++.+|..|++.|++.
T Consensus 81 yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 81 FNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 8
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.7e-25 Score=197.87 Aligned_cols=101 Identities=30% Similarity=0.475 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
+.|.+.|..|++.|+.|+.+++|..||++. .+|+||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999975 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 007584 185 PPENNVHKMAQELNNLFDIKWKS 207 (597)
Q Consensus 185 ~~~S~I~~~A~~Lek~Fek~~k~ 207 (597)
++++.++.+|..|+..|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999887764
No 9
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.9e-25 Score=196.14 Aligned_cols=98 Identities=60% Similarity=1.090 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
+++|..||+.|++++.+++|..||++....+|+||.+|++||||+||++||.++.|.++.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 007584 188 NNVHKMAQELNNLFDIKW 205 (597)
Q Consensus 188 S~I~~~A~~Lek~Fek~~ 205 (597)
|.++.+|..|++.|+++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999886
No 10
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.8e-25 Score=201.29 Aligned_cols=103 Identities=37% Similarity=0.714 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
...+..|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356799999999999999999999999965 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 185 PPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 185 ~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
+++|.++.+|..|+++|++.++++.
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998863
No 11
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.3e-25 Score=197.25 Aligned_cols=104 Identities=34% Similarity=0.643 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHH
Q 007584 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR---NLYSVSDEFVADVRLTFSN 179 (597)
Q Consensus 103 m~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~---~~Y~S~~EF~~DV~LIF~N 179 (597)
|++.+++.|..||..|++|+.+++|..||++ .+|+||++|++||||+||++||++ +.|.++++|..||+|||.|
T Consensus 1 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~N 77 (109)
T cd05502 1 LSPIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKN 77 (109)
T ss_pred CCHHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999997 599999999999999999999999 5999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 180 A~~YN~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
|+.||+++|.++.+|..|++.|++.|..+.
T Consensus 78 a~~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 78 CYKFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999998864
No 12
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.9e-25 Score=195.36 Aligned_cols=98 Identities=48% Similarity=0.878 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 108 THQCSVILKSLMMH---PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 108 ~k~c~~IL~~L~~~---~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
++.|..||+.|+++ +.+++|..||++....+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999 889999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 007584 185 PPENNVHKMAQELNNLFDIKW 205 (597)
Q Consensus 185 ~~~S~I~~~A~~Lek~Fek~~ 205 (597)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 13
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7e-25 Score=198.04 Aligned_cols=103 Identities=28% Similarity=0.432 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 007584 105 RGVTHQCSVILKSLMMH-PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~-~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~Y 183 (597)
.++...|..||..|+.| +.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999 9999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHhH
Q 007584 184 NPPEN-NVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 184 N~~~S-~I~~~A~~Lek~Fek~~k~i~ 209 (597)
|++++ .++.+|..|++.|+..+..|+
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 99865 688999999999999998875
No 14
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.6e-25 Score=193.80 Aligned_cols=98 Identities=46% Similarity=0.851 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 108 THQCSVILKSLMMH---PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 108 ~k~c~~IL~~L~~~---~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
++.|..||..|+++ +.++||+.||++....+||||++|++||||++|++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999995 579999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 007584 185 PPENNVHKMAQELNNLFDIKW 205 (597)
Q Consensus 185 ~~~S~I~~~A~~Lek~Fek~~ 205 (597)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 15
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.3e-24 Score=193.20 Aligned_cols=97 Identities=28% Similarity=0.470 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 007584 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (597)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~ 186 (597)
.++.|+.||..|+.++.+++|..+ |. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999763 33 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 007584 187 ENNVHKMAQELNNLFDIKWKSL 208 (597)
Q Consensus 187 ~S~I~~~A~~Lek~Fek~~k~i 208 (597)
+ .++.+|..|++.|++.|+++
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999876
No 16
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1e-24 Score=192.96 Aligned_cols=96 Identities=26% Similarity=0.521 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
++...|..++..|+ |+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++++|.+||+|||.||++||+
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34566778888888 99999999999985 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 007584 186 PENNVHKMAQELNNLFDIK 204 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~ 204 (597)
++|.++.+|..|.+.|...
T Consensus 80 ~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 80 GDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 17
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.2e-24 Score=191.82 Aligned_cols=100 Identities=41% Similarity=0.712 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 007584 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (597)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~ 186 (597)
++.+|..||+.|+.|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4688999999999999999999999987 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 007584 187 ENNVHKMAQELNNLFDIKWKSL 208 (597)
Q Consensus 187 ~S~I~~~A~~Lek~Fek~~k~i 208 (597)
+|.++.+|..|++.|++.++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999988764
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.4e-24 Score=191.88 Aligned_cols=100 Identities=21% Similarity=0.376 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007584 107 VTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (597)
Q Consensus 107 ~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA 180 (597)
+.++|..||+.|+.+.+ +++|..||+.. .+||||.+|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999866 89999998865 79999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 007584 181 MLYNPPENNVHKMAQELNNLFDIKWKSL 208 (597)
Q Consensus 181 ~~YN~~~S~I~~~A~~Lek~Fek~~k~i 208 (597)
+.||+++|.+|.+|..|+++|.+.++++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988764
No 19
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.6e-24 Score=191.10 Aligned_cols=103 Identities=33% Similarity=0.631 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 007584 109 HQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPEN 188 (597)
Q Consensus 109 k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S 188 (597)
-.+..|+..|+.++.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.||+++|
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35788999999999999999999987 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 189 NVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 189 ~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
.++.+|..|.+.|...+..+++++.
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~~ 105 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKLT 105 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999998865
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.90 E-value=1e-23 Score=190.44 Aligned_cols=104 Identities=31% Similarity=0.501 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
+++...|..|++.|+.|+.+++|..||++. .+||||++|++||||+||++||.++.|.|+.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 355678899999999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHHHHHhHH
Q 007584 185 PPE----NNVHKMAQELNNLFDIKWKSLEE 210 (597)
Q Consensus 185 ~~~----S~I~~~A~~Lek~Fek~~k~i~~ 210 (597)
+++ +.++.+|..|++.|..++..+.+
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 994 79999999999999999887643
No 21
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.1e-23 Score=186.03 Aligned_cols=92 Identities=32% Similarity=0.439 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|..||+|||.||++||+++
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 3 QKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred HHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 568999999999999999999999975 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 007584 188 NNVHKMAQELNNLF 201 (597)
Q Consensus 188 S~I~~~A~~Lek~F 201 (597)
|.+|.+|..|...-
T Consensus 81 s~~~~~A~~L~~~~ 94 (98)
T cd05513 81 TIYYKAAKKLLHSG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999997653
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=2.3e-23 Score=183.94 Aligned_cols=92 Identities=27% Similarity=0.476 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
...|..+|..|+.++.+++|..||++. .+||||++|++||||+||++||.++.|.++++|..||+|||.||+.||+++
T Consensus 3 ~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 3 EVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 357889999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 007584 188 NNVHKMAQELNNLF 201 (597)
Q Consensus 188 S~I~~~A~~Lek~F 201 (597)
+.+|++|..|++.-
T Consensus 81 s~~~~~A~~l~~~~ 94 (98)
T cd05512 81 TIFYRAAVRLRDQG 94 (98)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998753
No 23
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=9.5e-23 Score=181.85 Aligned_cols=97 Identities=25% Similarity=0.466 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 007584 108 THQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (597)
Q Consensus 108 ~k~c~~IL~~L~~~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~ 181 (597)
.++|..|+..|..+ +.+++|..||+.. ++||||++|++||||+||++||.++.|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~--~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKS--EYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcc--cCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888888876 5579999998865 899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 007584 182 LYNPPENNVHKMAQELNNLFDIKWK 206 (597)
Q Consensus 182 ~YN~~~S~I~~~A~~Lek~Fek~~k 206 (597)
+||+++|.+|.+|..|++.|.+...
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988653
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.1e-22 Score=180.61 Aligned_cols=96 Identities=27% Similarity=0.431 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 007584 108 THQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (597)
Q Consensus 108 ~k~c~~IL~~L~~~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~ 181 (597)
.+.|..|++.|+.+ +.+++|..||+.. .+|+||++|++||||+||++||++|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKK--LYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCC--CCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999955 5589999998855 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 007584 182 LYNPPENNVHKMAQELNNLFDIKW 205 (597)
Q Consensus 182 ~YN~~~S~I~~~A~~Lek~Fek~~ 205 (597)
.||+++|.++.+|..|++.|..++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.7e-22 Score=182.67 Aligned_cols=100 Identities=25% Similarity=0.393 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCC------CCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 007584 108 THQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~------~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~ 181 (597)
+++|..|++.|+++. .+.+|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 81 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAK 81 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999753 4578999766 45899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 182 LYNPPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 182 ~YN~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
.||+++|.+|.+|..|++.|++.+.++.
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988775
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=4.8e-22 Score=183.38 Aligned_cols=106 Identities=29% Similarity=0.434 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHHHHH---cCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007584 101 PKMDRGVTHQCSVILKSLM---MHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (597)
Q Consensus 101 ~km~~~~~k~c~~IL~~L~---~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF 177 (597)
..+.......|..++..|+ .++.+++|..||++.. .+|+||++|++||||+||++||.++.|.++.+|..||+|||
T Consensus 19 ~~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 97 (128)
T cd05529 19 PHIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLIL 97 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4467788889999999999 8999999999999764 69999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 007584 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKS 207 (597)
Q Consensus 178 ~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~ 207 (597)
.||+.||+++|.++.+|..|++.|...+..
T Consensus 98 ~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 98 SNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999987753
No 27
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.5e-22 Score=178.87 Aligned_cols=92 Identities=27% Similarity=0.426 Sum_probs=83.5
Q ss_pred HHHHHHHHHcC------CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 111 CSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 111 c~~IL~~L~~~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
+..|++.|+.+ +.+++|..||+.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~--~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKR--KYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcc--cCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45566666655 4689999998855 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 007584 185 PPENNVHKMAQELNNLFDIK 204 (597)
Q Consensus 185 ~~~S~I~~~A~~Lek~Fek~ 204 (597)
+++|.+|.+|..|+++|++.
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 28
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=5.3e-22 Score=174.71 Aligned_cols=101 Identities=43% Similarity=0.736 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
......|..|+..+.+++.+++|..||++. .+|+||.+|++||||++|++||.+|.|.++.+|..||++||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 345678999999999999999999999976 699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 007584 185 PPENNVHKMAQELNNLFDIKWKS 207 (597)
Q Consensus 185 ~~~S~I~~~A~~Lek~Fek~~k~ 207 (597)
++++.++.+|..|.+.|+..|++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.4e-22 Score=177.99 Aligned_cols=94 Identities=26% Similarity=0.487 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 007584 108 THQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~ 181 (597)
++.|..|+..|+.+.+ +++|..+++.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~--~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKV--LYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCC--CCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999988744 69999987754 899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 007584 182 LYNPPENNVHKMAQELNNLFDI 203 (597)
Q Consensus 182 ~YN~~~S~I~~~A~~Lek~Fek 203 (597)
.||+++|.++.+|..|++.|..
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 30
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=4.6e-22 Score=177.17 Aligned_cols=94 Identities=26% Similarity=0.421 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 007584 109 HQCSVILKSLMMH------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (597)
Q Consensus 109 k~c~~IL~~L~~~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~ 182 (597)
++|..|++.|..+ +.+.+|+.+|+.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKK--DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcc--cCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567777777655 5588999988865 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 007584 183 YNPPENNVHKMAQELNNLFDIK 204 (597)
Q Consensus 183 YN~~~S~I~~~A~~Lek~Fek~ 204 (597)
||+++|.||.+|..|+++|...
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999763
No 31
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=7.1e-22 Score=176.86 Aligned_cols=96 Identities=20% Similarity=0.319 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007584 107 VTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (597)
Q Consensus 107 ~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA 180 (597)
+...|..|++.|..+.. +++|..+++ +..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 34678888888887643 699999877 4589999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 007584 181 MLYNPPENNVHKMAQELNNLFDIK 204 (597)
Q Consensus 181 ~~YN~~~S~I~~~A~~Lek~Fek~ 204 (597)
+.||+++|.++.+|..|++.|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=6.3e-21 Score=160.98 Aligned_cols=84 Identities=48% Similarity=0.882 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 007584 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190 (597)
Q Consensus 111 c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I 190 (597)
|..||+.|+.|+.+++|..||++. .+|+|+.+|++||||.+|++||.+|.|.++.+|..||++||.||+.||+++|.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 889999999999999999999766 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 007584 191 HKMAQE 196 (597)
Q Consensus 191 ~~~A~~ 196 (597)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999964
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.84 E-value=9.2e-21 Score=161.42 Aligned_cols=96 Identities=40% Similarity=0.628 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 108 THQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 108 ~k~c~~IL~~L~~~--~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
...|..|+..|..+ +.+++|..||++. .+|+||.+|++||||.+|+.||.++.|.++.+|..||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35799999999999 9999999999975 6999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 007584 186 PENNVHKMAQELNNLFDIKW 205 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~~ 205 (597)
+++.++.+|..|...|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=9.9e-21 Score=168.74 Aligned_cols=94 Identities=30% Similarity=0.436 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 007584 109 HQCSVILKSLMM------HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (597)
Q Consensus 109 k~c~~IL~~L~~------~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~ 182 (597)
.++..|+..|+. ++.+++|..+|+.. .+||||++|++||||+||++||.++.|.++.+|..||.|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 345566666655 46789999998865 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 007584 183 YNPPENNVHKMAQELNNLFDIK 204 (597)
Q Consensus 183 YN~~~S~I~~~A~~Lek~Fek~ 204 (597)
||++++.++.+|..|++.|+..
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 35
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.9e-20 Score=168.58 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=89.3
Q ss_pred HHHHHHHHHc-CCCCCCCCCCCC---CCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 007584 111 CSVILKSLMM-HPAGWVFNRPVD---PVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (597)
Q Consensus 111 c~~IL~~L~~-~~~s~pF~~PVd---p~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~ 186 (597)
+..++..+.. -|.++||+.||. +.+.++|+||.+|++||||+||++||.+|.|.++++|..||.|||+||..||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4556667766 577899999997 444469999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhH
Q 007584 187 ENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 187 ~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
+|.++.+|..|...+...+.+|.
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998888774
No 36
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=3.5e-20 Score=166.05 Aligned_cols=94 Identities=30% Similarity=0.403 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 007584 108 THQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~ 181 (597)
.++|..|++.|+.... +.+|..+++ +..+||||++|++||||+||++||.+ |.++.+|..||.|||.||+
T Consensus 3 ~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 3 SKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 4678899999987744 468997655 44899999999999999999999998 9999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 007584 182 LYNPPENNVHKMAQELNNLFDIKW 205 (597)
Q Consensus 182 ~YN~~~S~I~~~A~~Lek~Fek~~ 205 (597)
.||+++|.+|.+|..|+++|..++
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998865
No 37
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.74 E-value=7.9e-18 Score=179.68 Aligned_cols=149 Identities=26% Similarity=0.308 Sum_probs=110.5
Q ss_pred CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 007584 122 PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201 (597)
Q Consensus 122 ~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~F 201 (597)
..+++|..+|+ +..+|+||.||+.||||++|++||.++.|.++++|..|++|||.||..||++++.+|.+|..|++.|
T Consensus 164 ~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 164 FLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred ccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 55788888666 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhhccCCcCCccccccCcccccccccCCCCCCCCCCCCCCCCcccchhhhhhccccchhHHHhh
Q 007584 202 DIKWKSLEEKWSSEVPKAGLGKILSGKMMEVNDTRQNCPKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVE 274 (597)
Q Consensus 202 ek~~k~i~~k~~~~~~~~~~~~~~s~~~~ei~~~~~~~~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ 274 (597)
...+..++............. ...................|++-.. ..+...|++++.+..+++.++.+..
T Consensus 242 ~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~ 312 (371)
T COG5076 242 LKLIEEIPEEMLELSIKPGRE-EREERESVLITNSQAHVGAWPFLRP-VSDEEVPDYYKDIRDPMDLSTKELK 312 (371)
T ss_pred HHHHHhccccchhhccCcccc-ccccchhhccccccccccccccccc-CCcccccchhhhhhcccccccchhh
Confidence 999998876544322222111 1111111111122444445555443 3356677888888888876654433
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=2e-17 Score=149.18 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007584 106 GVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~N 179 (597)
.++..+..|+..|++|.+ +.+|.+.+. ..|+||.+|+.||||++|+.||.+|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 456788999999999853 788988544 3588999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 180 A~~YN~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
|++||.++|.+|.+|..|+++|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887765
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.69 E-value=2.2e-17 Score=198.59 Aligned_cols=95 Identities=37% Similarity=0.839 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 007584 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190 (597)
Q Consensus 111 c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I 190 (597)
|..||..|+.|..+|||+.||++. .+||||+||++||||.||+.|+..|.|.++++|..||.|||.||.+||.+ |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 899999999999999999999987 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007584 191 HKMAQELNNLFDIKWKSL 208 (597)
Q Consensus 191 ~~~A~~Lek~Fek~~k~i 208 (597)
+..+..|.++|+..|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999977654
No 40
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.56 E-value=4.2e-15 Score=173.31 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
...+..|++++...++..+|..||+.. .++|||.||+.||||+++++.|....|.+.++|+.|+.||++|..+||++.
T Consensus 1263 ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1263 SSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 356889999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHhhhccCCcCC------ccccccCcccccccccCCCCCCCCCCCCCCCCcccchhhhh
Q 007584 188 NNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAG------LGKILSGKMMEVNDTRQNCPKTPPLHSTLSSKKSKMSEEKA 261 (597)
Q Consensus 188 S~I~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~------~~~~~s~~~~ei~~~~~~~~k~~P~~~~v~~K~~~~~~~k~ 261 (597)
+.++..+..+...+...|..-++++......+. ....+ .....+.+.....|++||||.+|++|++. +||++
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d~v~~-~~~d~~vs~~~~ipes~~f~~~v~~k~~~-~yy~k 1418 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDDQVAF-FILDNIVSQMKEIPESWPFHEPVNKKRVP-DYYKK 1418 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCccchhhH-hhhhhHHHHHHhcchhcccccccchhhch-HHHHH
Confidence 999999999999999888877766543222211 11112 34445555688999999999999977765 99999
Q ss_pred hccccchhHHHhhhcc
Q 007584 262 ARSSYCARAVEVERAK 277 (597)
Q Consensus 262 l~~~~d~~~~~~~lsk 277 (597)
|+.+||+++|.+++..
T Consensus 1419 ik~pmdl~~i~~n~~~ 1434 (1563)
T KOG0008|consen 1419 IKNPMDLETILKNIPP 1434 (1563)
T ss_pred hcChhhHHHHhhcCCc
Confidence 9999999999888763
No 41
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.45 E-value=6.1e-14 Score=158.54 Aligned_cols=102 Identities=35% Similarity=0.604 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
.....+..||..|..|..+|||.+||+.. ++||||.+|++||||.||+.+|..+.|..+..|+.|+.+||+||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 34567889999999999999999999977 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 186 PENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
.++.+|+.|..|...|...+....
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNELI 707 (720)
T ss_pred ccchheecccchhhhhcchhhhhh
Confidence 999999999999999988877654
No 42
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.28 E-value=2.8e-12 Score=116.53 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHH
Q 007584 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLY-------SVSDEFVADVRLTFSN 179 (597)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y-------~S~~EF~~DV~LIF~N 179 (597)
....|..+|..++.++.+|||..||++.+..+||||++|++||||+||+++|.++.| ..-..+.+++..++.|
T Consensus 4 ~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T cd05494 4 ALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccc
Confidence 456778888888888899999999999777999999999999999999999999744 4444555566666666
Q ss_pred HhhhCC
Q 007584 180 AMLYNP 185 (597)
Q Consensus 180 A~~YN~ 185 (597)
+..||.
T Consensus 84 ~~~~~~ 89 (114)
T cd05494 84 RSPSNI 89 (114)
T ss_pred cCcccc
Confidence 555554
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.27 E-value=1e-12 Score=153.85 Aligned_cols=157 Identities=23% Similarity=0.357 Sum_probs=131.1
Q ss_pred hhcccCCCccCCCCCcccccccccccCCCCCCCcCCCccccCCCCCCCCCCCHHHHHHH---HHHHHHHHcCCCCCCCCC
Q 007584 53 NQLMMSKPYRSSGGKKMIASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGVTHQC---SVILKSLMMHPAGWVFNR 129 (597)
Q Consensus 53 nQ~~~dss~~~~g~~~~i~~~~~~~~~~~~~~~kR~~~~~~~~~k~kr~km~~~~~k~c---~~IL~~L~~~~~s~pF~~ 129 (597)
-.+|.+++..|+|.....+..+..+...+--..+.+....+...+...+.+++..+-.+ ..|+.++..-+.+|+|++
T Consensus 1326 ~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d~v~~~~~d~~vs~~~~ipes~~f~~ 1405 (1563)
T KOG0008|consen 1326 LPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDDQVAFFILDNIVSQMKEIPESWPFHE 1405 (1563)
T ss_pred hHHHhhchhhhcCchHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCccchhhHhhhhhHHHHHHhcchhccccc
Confidence 45789999999999888888877777666666666666677777788888887765444 345556666699999999
Q ss_pred CCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 130 PVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 130 PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
||++. .+|+||.+|++||||.+|.+++..+.|.+..+|.+||++|+.|+..||+..+.+...|+.+-.+....+.+..
T Consensus 1406 ~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~~e~~ 1483 (1563)
T KOG0008|consen 1406 PVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANLLEYI 1483 (1563)
T ss_pred ccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHHHHHHH
Confidence 99987 5999999999999999999999999999999999999999999999999999999999888888777666544
Q ss_pred Hh
Q 007584 210 EK 211 (597)
Q Consensus 210 ~k 211 (597)
..
T Consensus 1484 ~~ 1485 (1563)
T KOG0008|consen 1484 EH 1485 (1563)
T ss_pred HH
Confidence 33
No 44
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.01 E-value=4.3e-10 Score=129.91 Aligned_cols=163 Identities=22% Similarity=0.297 Sum_probs=116.5
Q ss_pred ccccccchhhhhhhcccCCCccCCCCCcccccccccccCCCCCCCcCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHc
Q 007584 41 ENWRHSSSVAESNQLMMSKPYRSSGGKKMIASEHSKERSSILPFNKRQAQEVIEGPKDKRPKMDRGVTHQCSVILKSLMM 120 (597)
Q Consensus 41 ~~~rh~s~~~~~nQ~~~dss~~~~g~~~~i~~~~~~~~~~~~~~~kR~~~~~~~~~k~kr~km~~~~~k~c~~IL~~L~~ 120 (597)
..-|++..|.|++-+...++.+.............. .++.++..... ......++.++...--+.|..|+.....
T Consensus 964 rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 1038 (1157)
T KOG0386|consen 964 RGRRARKEVVYSDRLTEMQWLKENESVNKEDSEEEE----RRRGRKKSSLD-TRPLSQKKRKLRPRSPKQALKIASTSIK 1038 (1157)
T ss_pred ccccccceeecccccchhhhhhhccccccccchhhh----hccCCCccccc-cccchhhcccccCCChHHHHHHHHHHHh
Confidence 345677788898888888887665433222211111 11111111111 1111111112222223778888888876
Q ss_pred C------CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHH
Q 007584 121 H------PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMA 194 (597)
Q Consensus 121 ~------~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A 194 (597)
+ ..+..|... |.+..+||||.||+.||++..|.++|.++.|.+..+...||.++|.||++||..+|.||.+|
T Consensus 1039 ~~~~~~r~~~~~~~~~--~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~ 1116 (1157)
T KOG0386|consen 1039 YKDSAGRELSEVFLKL--PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDA 1116 (1157)
T ss_pred cccccccccchhcccC--cccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhH
Confidence 5 446889984 44558999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHH
Q 007584 195 QELNNLFDIKWKSLEE 210 (597)
Q Consensus 195 ~~Lek~Fek~~k~i~~ 210 (597)
..|+.+|......|..
T Consensus 1117 ~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1117 IVLQSVFKSARQEISK 1132 (1157)
T ss_pred HHHHHHHhhhHHHHhc
Confidence 9999999999988875
No 45
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.94 E-value=8.1e-10 Score=100.89 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 146 SKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 146 k~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
-.||||+||++||.+|.|.++.+|++||+|||.||++||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 368999999999999999999999999999999999999874
No 46
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=128.44 Aligned_cols=102 Identities=30% Similarity=0.494 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
.+.|+.++..|...+-..+|..||++. ++|||+++|++||||.||+.++.++.|.++++|..|+.||..||+.||..+
T Consensus 567 ~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~d 644 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKD 644 (1051)
T ss_pred HHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccC
Confidence 456778889999999999999999987 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHh
Q 007584 188 NNVHKMAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 188 S~I~~~A~~Lek~Fek~~k~i~~k 211 (597)
..+|..|..++......+......
T Consensus 645 tv~~r~av~~~e~~~~~~~~arke 668 (1051)
T KOG0955|consen 645 TVYYRAAVRLRELIKKDFRNARKE 668 (1051)
T ss_pred eehHhhhHHHHhhhhhHHHhcccc
Confidence 999999999999988887766544
No 47
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.86 E-value=7.4e-09 Score=116.37 Aligned_cols=103 Identities=26% Similarity=0.386 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007584 102 KMDRGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRL 175 (597)
Q Consensus 102 km~~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~L 175 (597)
.+....+.++..||..+..+.+ ...|.+ .|.++..|+||.+|..||+|..|+.|+..+.|.+...|..|+.|
T Consensus 48 ~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~fek--lp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~l 125 (629)
T KOG1827|consen 48 VIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEK--LPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLL 125 (629)
T ss_pred ccChHHHHHHHHHHHHHHhhccccCcccchhHhh--ccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3466777888899998888733 567888 45566899999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 007584 176 TFSNAMLYNPPENNVHKMAQELNNLFDIKWK 206 (597)
Q Consensus 176 IF~NA~~YN~~~S~I~~~A~~Lek~Fek~~k 206 (597)
||.||+.||.+++.+++++..|+..|.....
T Consensus 126 m~ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 126 MTENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 9999999999999999999999999988653
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.54 E-value=1.5e-08 Score=115.87 Aligned_cols=93 Identities=40% Similarity=0.755 Sum_probs=86.2
Q ss_pred HHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q 007584 116 KSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQ 195 (597)
Q Consensus 116 ~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~ 195 (597)
+.++.|.++|+|..||+...+.+|+||.+|.+|||++||..++.+..|.+..+..+|+.-+|.||..||.....|+.++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 007584 196 ELNNLFDIKWKSL 208 (597)
Q Consensus 196 ~Lek~Fek~~k~i 208 (597)
.++..|...+..+
T Consensus 82 ~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 82 SLEKLFPKKLRSM 94 (640)
T ss_pred cchhhcccccccc
Confidence 9999986555443
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.48 E-value=9.2e-08 Score=109.20 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 007584 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (597)
Q Consensus 103 m~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~ 182 (597)
........|. .+.++|+|..||+.. ..|+||.||+.||||.|+.+|+..+.|.+.++|+.|+.+||.||..
T Consensus 290 ~~~~~~~~~~-------~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~ 360 (720)
T KOG1472|consen 290 GQEELYEAAE-------RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEK 360 (720)
T ss_pred cCHHHHHHhc-------ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchh
Confidence 3444455555 489999999999966 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCC
Q 007584 183 YNPPEN 188 (597)
Q Consensus 183 YN~~~S 188 (597)
||...+
T Consensus 361 ~n~ee~ 366 (720)
T KOG1472|consen 361 YNSEES 366 (720)
T ss_pred hccccc
Confidence 998653
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.97 E-value=1.3e-06 Score=93.26 Aligned_cols=95 Identities=26% Similarity=0.257 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 007584 111 CSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNV 190 (597)
Q Consensus 111 c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I 190 (597)
.+.++..+-+...-..|..||.+. -.|+|.+||+.|||+.|++.|++-++|.+..+|..|.++|..||..||...+.+
T Consensus 24 ~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~ 101 (418)
T KOG1828|consen 24 AEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVP 101 (418)
T ss_pred HHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccc
Confidence 455666666666677888889887 489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007584 191 HKMAQELNNLFDIKWKS 207 (597)
Q Consensus 191 ~~~A~~Lek~Fek~~k~ 207 (597)
+..|++|..+-...+..
T Consensus 102 ~~aaKrL~~v~~~~~qe 118 (418)
T KOG1828|consen 102 IVAAKRLCPVRLGMTQE 118 (418)
T ss_pred cccccccchhhcchhhH
Confidence 99999998876665553
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.86 E-value=1.1e-05 Score=86.25 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=74.3
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q 007584 113 VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192 (597)
Q Consensus 113 ~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~ 192 (597)
....++.......+|..||... .+|.|..+|++|+|++|++.|+.++.|.| .+|..|+.||+.||++||.+...+|.
T Consensus 215 ~q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yye 291 (418)
T KOG1828|consen 215 LQEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYE 291 (418)
T ss_pred HHHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHH
Confidence 3444555556788899988866 79999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHH
Q 007584 193 MAQELNN 199 (597)
Q Consensus 193 ~A~~Lek 199 (597)
.|..+.-
T Consensus 292 lank~lh 298 (418)
T KOG1828|consen 292 LANKQLH 298 (418)
T ss_pred HHHhhhh
Confidence 9887765
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.79 E-value=2.4e-06 Score=91.85 Aligned_cols=94 Identities=33% Similarity=0.585 Sum_probs=84.3
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q 007584 113 VILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHK 192 (597)
Q Consensus 113 ~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~ 192 (597)
.++.....+...|+|..|+... ..|+|+++|..+|++.+.+.++..+.|.....|..|..++|.||..||+....++.
T Consensus 270 ~~i~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (371)
T COG5076 270 VLITNSQAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYK 347 (371)
T ss_pred hcccccccccccccccccCCcc--cccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhh
Confidence 3444456778899999999866 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 007584 193 MAQELNNLFDIKWKSL 208 (597)
Q Consensus 193 ~A~~Lek~Fek~~k~i 208 (597)
.+..+..++...+.-+
T Consensus 348 ~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 348 NANVLEDFVIKKTRLI 363 (371)
T ss_pred hccchhhhHhhhhhhh
Confidence 9999999888766544
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0014 Score=75.40 Aligned_cols=87 Identities=28% Similarity=0.358 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHhhhhhHHHHhhhhhhhcccCCCCChhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--
Q 007584 420 QMSPKKALRAAMLKSRFADTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQREE-----KARIEAQIKAAEAASRMK-- 492 (597)
Q Consensus 420 ~~sp~K~~RAA~lk~rfadtIlKA~~k~ll~~g~k~dp~~~~~e~~~~e~~~~ee-----~ar~~a~~~a~e~~~~~~-- 492 (597)
||+-+.--++-+-|.. .=|.-|-++|++ -.|+|+||+|+.+||| ++|.|+|+|++.+-.++-
T Consensus 311 ~~TFEDKrkeNy~kGq---aELerRRq~lee--------qqqreree~eqkEreE~ekkererqEqErk~qlElekqLer 379 (1118)
T KOG1029|consen 311 PVTFEDKRKENYEKGQ---AELERRRQALEE--------QQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLER 379 (1118)
T ss_pred CcchhhhhHHhHhhhh---HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554455444431 122233345533 3456666666666664 455566666654443321
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 007584 493 ------AEIELKKQREKEREAARVALQKMER 517 (597)
Q Consensus 493 ------~~~~~~~~r~~~~e~~r~~~~~~~~ 517 (597)
+.+|.|+++-.+||+||++|++|.+
T Consensus 380 QReiE~qrEEerkkeie~rEaar~ElEkqRq 410 (1118)
T KOG1029|consen 380 QREIERQREEERKKEIERREAAREELEKQRQ 410 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445555555667899999988865
No 54
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.90 E-value=0.012 Score=70.97 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 007584 162 LYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLF 201 (597)
Q Consensus 162 ~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~F 201 (597)
.|..++.|.. +. .+....++||..+..|-.++
T Consensus 206 ~YmAPEvL~g-------e~-~~~s~KSDVWSLG~ILYELL 237 (1021)
T PTZ00266 206 YYWSPELLLH-------ET-KSYDDKSDMWALGCIIYELC 237 (1021)
T ss_pred cccCHHHHhc-------cC-CCCCchhHHHHHHHHHHHHH
Confidence 4777765532 11 12334578888887776654
No 55
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.93 E-value=0.014 Score=54.88 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 148 PMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 148 PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
|.||.-|++|+..|.|.|+.+|..||-.|+.-++.-.+....+-+....+..+|.+.+..+..-++
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999999999988876665555555555666777777776654444
No 56
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.62 E-value=0.04 Score=66.78 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 463 EKERLEQRQREEKARIEAQIKAAEAASRMKA 493 (597)
Q Consensus 463 e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~ 493 (597)
|+.|.||++|+|+.|+|.|++..|.++|.+.
T Consensus 469 er~Erer~er~erer~Erer~erEr~erer~ 499 (1021)
T PTZ00266 469 ERLERERMERIERERLERERLERERLERDRL 499 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555554444333
No 57
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.57 E-value=0.041 Score=63.73 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007584 453 DKADPVKLQQEKERLEQRQREEKARIEAQI 482 (597)
Q Consensus 453 ~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~ 482 (597)
+-+.-||-++|-|+.+||+.||++|.++|+
T Consensus 931 E~~E~ER~rrEaeek~rre~ee~k~~k~e~ 960 (1259)
T KOG0163|consen 931 ELAEAERKRREAEEKRRREEEEKKRAKAEM 960 (1259)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344556677777788888888887776664
No 58
>PLN03086 PRLI-interacting factor K; Provisional
Probab=95.46 E-value=0.02 Score=65.30 Aligned_cols=74 Identities=28% Similarity=0.371 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHhh
Q 007584 462 QEKERLEQRQREE--KARIEAQIKAAEAASRMKAEI-ELKKQREK-EREAARVALQKMERTVEIEHNLEILKELEMLS 535 (597)
Q Consensus 462 ~e~~~~e~~~~ee--~ar~~a~~~a~e~~~~~~~~~-~~~~~r~~-~~e~~r~~~~~~~~t~~~~~~~~~~~dle~l~ 535 (597)
+||-+.|.++|.+ +.|+++|+|+.++|++++++. ++.++|.+ ..+++-.|-++|+....-+..+-|..-|+-++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (567)
T PLN03086 9 REKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESLQAGRGIVFSRIFEAVS 86 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeeccc
Confidence 3333334444443 456789999977777776644 34455444 34455567788887776666665555444444
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=0.64 Score=54.49 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=6.2
Q ss_pred CCChHHHHHHHH
Q 007584 420 QMSPKKALRAAM 431 (597)
Q Consensus 420 ~~sp~K~~RAA~ 431 (597)
|.--+|.-+|-+
T Consensus 326 qaELerRRq~le 337 (1118)
T KOG1029|consen 326 QAELERRRQALE 337 (1118)
T ss_pred hHHHHHHHHHHH
Confidence 555566544433
No 60
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=90.87 E-value=0.88 Score=53.51 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007584 462 QEKERLEQRQREEKARIEA 480 (597)
Q Consensus 462 ~e~~~~e~~~~ee~ar~~a 480 (597)
+|.|+.+.|++||+.|+++
T Consensus 227 qe~eE~qkreeEE~~r~ee 245 (1064)
T KOG1144|consen 227 QEEEERQKREEEERLRREE 245 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 61
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=1.6 Score=45.18 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh----------hhHHHHHHHHH
Q 007584 497 LKKQREKEREAARVALQKMERTVEIE----------HNLEILKELEM 533 (597)
Q Consensus 497 ~~~~r~~~~e~~r~~~~~~~~t~~~~----------~~~~~~~dle~ 533 (597)
+|+.||.+..++-.+..+|+-.+.++ +...||-||..
T Consensus 161 ~RkakEE~arkeheEylkmKaaFsVeeEGtee~~~eeqdnll~eFv~ 207 (299)
T KOG3054|consen 161 ERKAKEEEARKEHEEYLKMKAAFSVEEEGTEEVQGEEQDNLLSEFVE 207 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeccccccccccchHHHHHHHHHH
Confidence 33334333334555677887655543 23346666654
No 62
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=89.10 E-value=0.28 Score=57.73 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 007584 145 ISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKW 205 (597)
Q Consensus 145 Ik~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~Fek~~ 205 (597)
-.-|..|..|..+|++++|++.+.|..||-.|..||.+|-+-+.-+...+..|..+|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 4568999999999999999999999999999999999999988777777777777776543
No 63
>PTZ00121 MAEBL; Provisional
Probab=88.49 E-value=2 Score=53.57 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=10.2
Q ss_pred HHHhhhhhHHHHhhhh
Q 007584 430 AMLKSRFADTILKAQQ 445 (597)
Q Consensus 430 A~lk~rfadtIlKA~~ 445 (597)
|+.|.++|-.+--||.
T Consensus 1120 ~~~r~e~arr~eeARr 1135 (2084)
T PTZ00121 1120 AKKKAEDARKAEEARK 1135 (2084)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4566666666666664
No 64
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=87.03 E-value=2.3 Score=50.23 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 458 VKLQQEKERLEQRQREEKARIEAQIKAAEAASRM 491 (597)
Q Consensus 458 ~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~ 491 (597)
|+-++|+||..||+.||++|.+.+-+++|+|+++
T Consensus 231 E~qkreeEE~~r~eeEEer~~ee~E~~~eEak~k 264 (1064)
T KOG1144|consen 231 ERQKREEEERLRREEEEERRREEEEAQEEEAKEK 264 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666555555544444444443
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=3 Score=43.96 Aligned_cols=96 Identities=26% Similarity=0.312 Sum_probs=50.3
Q ss_pred hhhhhhcccCCCCCh-hhh--HHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 007584 443 AQQRTLLDHGDKADP-VKL--QQEKERLEQR--QREEKARIEAQIKAA--EAASRMKAEIELKKQ-----REKEREAARV 510 (597)
Q Consensus 443 A~~k~ll~~g~k~dp-~~~--~~e~~~~e~~--~~ee~ar~~a~~~a~--e~~~~~~~~~~~~~~-----r~~~~e~~r~ 510 (597)
||-+.|.+-.-+.|| .|+ +|||+.+++| +||+-||+.|.+.+. ++|.++++.+.+... .-.-.|.+..
T Consensus 216 aRl~~LV~~A~~~DPRIK~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kk 295 (379)
T COG5269 216 ARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKK 295 (379)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 345555555667888 555 5667777766 467888887766543 222333332221111 1111222222
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHhhcCCCCccc
Q 007584 511 ALQKMERTVEIEHNLEILKELEMLSGCCLSPHL 543 (597)
Q Consensus 511 ~~~~~~~t~~~~~~~~~~~dle~l~~~~~~~~~ 543 (597)
+ ++|++.+--| -+||+.-.+.+...+|+
T Consensus 296 a-~k~~Kk~ikn----a~kd~~yf~d~~~a~~i 323 (379)
T COG5269 296 A-LKMEKKAIKN----AAKDADYFGDADKAEHI 323 (379)
T ss_pred H-HHHHHHHHHh----hhhhhccccCCchhhhc
Confidence 2 3455544332 37888888876555555
No 66
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=86.66 E-value=2.5 Score=50.16 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=19.6
Q ss_pred hhhhhhcccCCCCChhhhHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 007584 443 AQQRTLLDHGDKADPVKLQQEKERLEQ--RQREEKARIEAQIKAA 485 (597)
Q Consensus 443 A~~k~ll~~g~k~dp~~~~~e~~~~e~--~~~ee~ar~~a~~~a~ 485 (597)
||.+.+ . ..|.|-|+++-+++.-+. +..+.++-.+||.++.
T Consensus 568 aRk~li-E-~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl 610 (988)
T KOG2072|consen 568 ARKSLI-E-KRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRL 610 (988)
T ss_pred HHHHHH-H-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 2 455666666555544443 3334444444444443
No 67
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=0.37 Score=58.55 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCCcC---CCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHHHhhhCCCC
Q 007584 122 PAGWVFNRPVDPVKL---DIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVA--DVRLTFSNAMLYNPPE 187 (597)
Q Consensus 122 ~~s~pF~~PVdp~k~---~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~--DV~LIF~NA~~YN~~~ 187 (597)
+.+..|-.|+.+... .+++|-.+|+.+||+...-.++..+.|.++.+|.. ++.|||.|+..||+..
T Consensus 531 R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 531 RSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 336778888874322 25699999999999999999999999999999999 9999999999999965
No 68
>PTZ00121 MAEBL; Provisional
Probab=85.94 E-value=4.6 Score=50.66 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=6.3
Q ss_pred CCcchhhcC
Q 007584 137 DIPDYFSII 145 (597)
Q Consensus 137 ~vPDYy~II 145 (597)
..|.|-..|
T Consensus 670 SCPNYGK~i 678 (2084)
T PTZ00121 670 SCPNYGKAI 678 (2084)
T ss_pred CCCCCCceE
Confidence 467777766
No 69
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.44 E-value=39 Score=40.24 Aligned_cols=44 Identities=34% Similarity=0.466 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhHHHHhhhhhhhcccC---CCCChhhhHHHHHHHHH
Q 007584 425 KALRAAMLKSRFADTILKAQQRTLLDHG---DKADPVKLQQEKERLEQ 469 (597)
Q Consensus 425 K~~RAA~lk~rfadtIlKA~~k~ll~~g---~k~dp~~~~~e~~~~e~ 469 (597)
|.|||-|=-.|-.+.=|.-|--. |..+ -|.+...||+|-|+|+.
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~-l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISS-LTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhh-ccccchHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777766433 2333 34555666666666554
No 70
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=84.69 E-value=7.7 Score=41.07 Aligned_cols=19 Identities=58% Similarity=0.658 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007584 461 QQEKERLEQRQREEKARIE 479 (597)
Q Consensus 461 ~~e~~~~e~~~~ee~ar~~ 479 (597)
+||+.+||+...|||.|++
T Consensus 330 rqekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 330 RQEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466677776666776665
No 71
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.93 E-value=10 Score=41.03 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHhhhhhHHHHhhhhhhhcccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 420 QMSPKKALRAAMLKSRFADTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIELKK 499 (597)
Q Consensus 420 ~~sp~K~~RAA~lk~rfadtIlKA~~k~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~ 499 (597)
+.+-+|++ +-+++. +|.|.|+..+. +--|.+-++-+||.+++|++..+.....+.++++....
T Consensus 105 ~~qnqkL~-nqL~~~--~~vf~k~k~~~--------------q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 105 QSQNQKLK-NQLFHV--REVFMKTKGDI--------------QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHhHHHHH-HHHHHH--HHHHHHhcchH--------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 34444443 455555 66777766544 33688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 007584 500 QREKEREAARVALQKMERTVEIEHNLEI 527 (597)
Q Consensus 500 ~r~~~~e~~r~~~~~~~~t~~~~~~~~~ 527 (597)
-||+-++.|+++-..-|-.+-|++....
T Consensus 168 nrELaE~layqq~L~~eyQatf~eq~~m 195 (401)
T PF06785_consen 168 NRELAEALAYQQELNDEYQATFVEQHSM 195 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhh
Confidence 9999999898887777776666665543
No 72
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=82.39 E-value=1.1 Score=40.51 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCCCc-ccchhhhhhccccchhHHHhhhcc
Q 007584 239 CPKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 239 ~~k~~P~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.+-++||..+|++.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 20 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~ 59 (107)
T cd05497 20 HKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLEN 59 (107)
T ss_pred CCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcC
Confidence 355789999999864 689999999999999999998863
No 73
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.38 E-value=10 Score=44.99 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhHHh
Q 007584 193 MAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 193 ~A~~Lek~Fek~~k~i~~k 211 (597)
+-..|+++|.+++-+-+..
T Consensus 477 CNEKLQ~FFNerILkeEQE 495 (1259)
T KOG0163|consen 477 CNEKLQKFFNERILKEEQE 495 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467788888776654443
No 74
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=82.28 E-value=1.1 Score=40.54 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCc-ccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+.++||..+|.++. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~ 58 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDT 58 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhc
Confidence 56788999998865 579999999999999999999863
No 75
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=81.43 E-value=10 Score=37.48 Aligned_cols=18 Identities=44% Similarity=0.499 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007584 479 EAQIKAAEAASRMKAEIE 496 (597)
Q Consensus 479 ~a~~~a~e~~~~~~~~~~ 496 (597)
+|+++|.|+|.+++.+.+
T Consensus 114 eae~ka~EeAek~r~ErE 131 (171)
T PF05672_consen 114 EAEAKAREEAEKQRKERE 131 (171)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555544444
No 76
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.02 E-value=7.5 Score=40.48 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhh
Q 007584 505 REAARVALQKMER 517 (597)
Q Consensus 505 ~e~~r~~~~~~~~ 517 (597)
.|++|++.+.-++
T Consensus 158 ee~~RkakEE~ar 170 (299)
T KOG3054|consen 158 EEKERKAKEEEAR 170 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666655443
No 77
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=80.96 E-value=1.1 Score=39.96 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+.++||..+|.++ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 18 ~~s~~F~~PV~~~-~~pdY~~iIk~PmDL~tI~~kl~~ 54 (99)
T cd05508 18 PGAEPFLKPVDLE-QFPDYAQYVFKPMDLSTLEKNVRK 54 (99)
T ss_pred cCcchhcCCCChh-hCCCHHHHcCCCCCHHHHHHHHhc
Confidence 4578898888874 578999999999999999999863
No 78
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=80.59 E-value=16 Score=35.58 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=45.2
Q ss_pred HHHHhhhhhhhcccCCCCChhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 007584 438 DTILKAQQRTLLDHGDKADPVKLQQEKERL--EQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKER--EAARVALQ 513 (597)
Q Consensus 438 dtIlKA~~k~ll~~g~k~dp~~~~~e~~~~--e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~~r~~~~--e~~r~~~~ 513 (597)
..|+..|+..+.+.=+. -++++.|-+++ +-+++=.+||.+|+.-++|++.+.+++.+++++....+ .-=-+..+
T Consensus 36 ~~iLe~R~~~I~~~L~~--Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~ 113 (155)
T PRK06569 36 EEIFNNRQTNIQDNITQ--ADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIE 113 (155)
T ss_pred HHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677787775332222 33333333333 33334467778888777777777766666655543222 23344566
Q ss_pred Hhhhhhh
Q 007584 514 KMERTVE 520 (597)
Q Consensus 514 ~~~~t~~ 520 (597)
+|.+.++
T Consensus 114 ~~~~~~~ 120 (155)
T PRK06569 114 DINLAAK 120 (155)
T ss_pred HHHHHHH
Confidence 7777666
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=80.45 E-value=6.7 Score=47.46 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007584 482 IKAAEAASRMKAEIELK 498 (597)
Q Consensus 482 ~~a~e~~~~~~~~~~~~ 498 (597)
.+-+|+|+|++++++++
T Consensus 850 ~~~~ee~~r~~eee~~~ 866 (1018)
T KOG2002|consen 850 EKELEEARRKEEEEKAR 866 (1018)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555655555443
No 80
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=79.70 E-value=11 Score=44.11 Aligned_cols=10 Identities=20% Similarity=0.176 Sum_probs=4.3
Q ss_pred CCCCcccccC
Q 007584 587 DGDGEEGEIF 596 (597)
Q Consensus 587 ~~d~eegei~ 596 (597)
++++++-.||
T Consensus 453 ~d~~~~adf~ 462 (811)
T KOG4364|consen 453 GDGCEEADFD 462 (811)
T ss_pred CCcceecccc
Confidence 3444444443
No 81
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=79.32 E-value=7.2 Score=39.12 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=10.9
Q ss_pred ccCCCCChhhhHHHHHHHH
Q 007584 450 DHGDKADPVKLQQEKERLE 468 (597)
Q Consensus 450 ~~g~k~dp~~~~~e~~~~e 468 (597)
+.-.+.||..+.+..|.++
T Consensus 68 ~~~~~~dpd~v~~rqEa~e 86 (190)
T PF06936_consen 68 DAAAKKDPDVVVRRQEAME 86 (190)
T ss_dssp HHHHTTSHHHHHHHHHHHH
T ss_pred hhhhhcChhHHHHHHHHHH
Confidence 3345677876655555544
No 82
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=79.08 E-value=3.2 Score=38.40 Aligned_cols=37 Identities=5% Similarity=-0.034 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+.++||..+|.+. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 21 ~~s~~F~~PVd~~-~~pdY~~iIk~PmDL~tIk~kL~~ 57 (119)
T cd05496 21 EDSEPFRQPVDLL-KYPDYRDIIDTPMDLGTVKETLFG 57 (119)
T ss_pred CccccccCCCChh-hcCcHHHHhCCcccHHHHHHHHhC
Confidence 3468899999876 478999999999999999999963
No 83
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=78.28 E-value=9.4 Score=43.90 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=6.4
Q ss_pred HHHHHHHHhhc
Q 007584 526 EILKELEMLSG 536 (597)
Q Consensus 526 ~~~~dle~l~~ 536 (597)
.|..+-|.|+-
T Consensus 692 RihreReelRr 702 (940)
T KOG4661|consen 692 RIHREREELRR 702 (940)
T ss_pred hhhhhHHHHhh
Confidence 55556666663
No 84
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=78.25 E-value=8.5 Score=39.71 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHhhhhhHHHHhhhhhhhcccCC-----CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 007584 431 MLKSRFADTILKAQQRTLLDHGD-----KADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKA---EIELKKQRE 502 (597)
Q Consensus 431 ~lk~rfadtIlKA~~k~ll~~g~-----k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~---~~~~~~~r~ 502 (597)
+||+.|+-+..+.|...-+.+-+ +.+-+.++.+.++.-..-|+++++|-+++++.-++-+.+. ..+++.+++
T Consensus 4 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e 83 (255)
T TIGR03825 4 IIKSTKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERE 83 (255)
T ss_pred hhcCccCCcchhhcceeeeeeeccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444333322 2223556667777777777777777777666544444333 233444445
Q ss_pred HHHHHHHHH
Q 007584 503 KEREAARVA 511 (597)
Q Consensus 503 ~~~e~~r~~ 511 (597)
+-+++||+.
T Consensus 84 ~~~e~A~~e 92 (255)
T TIGR03825 84 RLIQEAKQE 92 (255)
T ss_pred HHHHHHHHH
Confidence 455555544
No 85
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=76.20 E-value=2.1 Score=39.08 Aligned_cols=39 Identities=3% Similarity=0.008 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCC----CcccchhhhhhccccchhHHHhhhcc
Q 007584 239 CPKTPPLHSTLSS----KKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 239 ~~k~~P~~~~v~~----K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.|.+.|++.+|.+ +.-.|+|+.+|+.|||+++|+.+|..
T Consensus 16 lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~ 58 (109)
T cd05492 16 LPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINS 58 (109)
T ss_pred CcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHc
Confidence 4557888888853 33479999999999999999998863
No 86
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=75.65 E-value=1.5 Score=52.76 Aligned_cols=38 Identities=45% Similarity=0.568 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 473 EEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVA 511 (597)
Q Consensus 473 ee~ar~~a~~~a~e~~~~~~~~~~~~~~r~~~~e~~r~~ 511 (597)
-||+|.|||.+|.|++.|.++.+. .+.||++||++|++
T Consensus 588 ~ek~RReaEq~~reerERer~~e~-~rerer~~~~~r~~ 625 (982)
T PF03154_consen 588 VEKARREAEQRAREERERERERER-EREREREREAERAA 625 (982)
T ss_pred HHHHHhhhhccchhhhhhcccccc-hhhhhhhhhhhhhh
Confidence 357888999888776666544322 33444444444443
No 87
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=75.15 E-value=2.3 Score=38.12 Aligned_cols=38 Identities=0% Similarity=-0.093 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 239 CPKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 239 ~~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.+.++||..+|.+ ...|+|+.+|+.|||+.+|+.+|..
T Consensus 18 ~~~a~~F~~pV~~-~~~p~Y~~iIk~PmDL~tI~~kl~~ 55 (104)
T cd05507 18 HRYASVFLKPVTE-DIAPGYHSVVYRPMDLSTIKKNIEN 55 (104)
T ss_pred CCCCHhhcCCCCc-cccCCHHHHhCCCcCHHHHHHHHhc
Confidence 4457788888876 4678999999999999999998863
No 88
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=74.10 E-value=2.6 Score=37.49 Aligned_cols=36 Identities=6% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+.++||..+|.+. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 16 ~~s~~F~~pv~~~-~~pdY~~iIk~PmDL~tI~~kl~ 51 (97)
T cd05505 16 RFSWPFREPVTAD-EAEDYKKVITNPMDLQTMQTKCS 51 (97)
T ss_pred CCcccccCCCChh-hcccHHHHcCCcCCHHHHHHHHc
Confidence 3467888888854 57999999999999999998886
No 89
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=73.80 E-value=65 Score=32.47 Aligned_cols=42 Identities=29% Similarity=0.475 Sum_probs=33.7
Q ss_pred ccCCCChHHHHHHHHHhhhhhHH--HHhhhh-----hhhcccCCCCChh
Q 007584 417 LDVQMSPKKALRAAMLKSRFADT--ILKAQQ-----RTLLDHGDKADPV 458 (597)
Q Consensus 417 ~~~~~sp~K~~RAA~lk~rfadt--IlKA~~-----k~ll~~g~k~dp~ 458 (597)
...|-.|++.|+|||||.--+|. |+|-|+ -.|+++|--||=.
T Consensus 64 ~k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q~GsIGDd~ 112 (190)
T PF09802_consen 64 EKKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGDDL 112 (190)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccHHH
Confidence 34578899999999999977774 777777 5678889988874
No 90
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=73.51 E-value=3 Score=38.28 Aligned_cols=38 Identities=3% Similarity=-0.037 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCC-cccchhhhhhccccchhHHHhhhc
Q 007584 239 CPKTPPLHSTLSSK-KSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 239 ~~k~~P~~~~v~~K-~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.+-.+||..+|.+. ...|+|+.+|+.|||+.+++.+|.
T Consensus 18 ~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~ 56 (114)
T cd05494 18 NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIV 56 (114)
T ss_pred CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHH
Confidence 34578999888873 568999999999999999988886
No 91
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=70.85 E-value=19 Score=43.19 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007584 474 EKARIEAQIKAAEAASRMKAE 494 (597)
Q Consensus 474 e~ar~~a~~~a~e~~~~~~~~ 494 (597)
++.|....++.+|++.|++++
T Consensus 797 eerk~~~~re~EEEr~Rr~EE 817 (988)
T KOG2072|consen 797 EERKQAYYREIEEERARREEE 817 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 92
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=70.48 E-value=18 Score=38.70 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhhhHHHHhh
Q 007584 425 KALRAAMLKSRFADTILKA 443 (597)
Q Consensus 425 K~~RAA~lk~rfadtIlKA 443 (597)
.++.+++ .|+|.+.+.
T Consensus 235 ~l~~~v~---~l~D~~~~~ 250 (321)
T PF07946_consen 235 PLLKLVF---YLIDKLARF 250 (321)
T ss_pred HHHHHHH---HHHHHhhee
Confidence 3444444 578888744
No 93
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=69.68 E-value=19 Score=40.98 Aligned_cols=9 Identities=33% Similarity=0.268 Sum_probs=3.9
Q ss_pred hhhhhHHHH
Q 007584 433 KSRFADTIL 441 (597)
Q Consensus 433 k~rfadtIl 441 (597)
|.|=|.-=.
T Consensus 204 KEreaeea~ 212 (489)
T PF05262_consen 204 KEREAEEAA 212 (489)
T ss_pred HHHHhHHHH
Confidence 554444333
No 94
>PLN03086 PRLI-interacting factor K; Provisional
Probab=69.49 E-value=7.2 Score=45.08 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=10.3
Q ss_pred hhhhhhcccCCCCChhhhHHHHH
Q 007584 443 AQQRTLLDHGDKADPVKLQQEKE 465 (597)
Q Consensus 443 A~~k~ll~~g~k~dp~~~~~e~~ 465 (597)
||||-.-.|.+.++..|+++|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ 30 (567)
T PLN03086 8 AREKLEREQRERKQRAKLKLERE 30 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444334444444455544443
No 95
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=68.20 E-value=22 Score=38.03 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHhhhhhHHHHhhhhh
Q 007584 419 VQMSPKKALRAAMLKSRFADTILKAQQR 446 (597)
Q Consensus 419 ~~~sp~K~~RAA~lk~rfadtIlKA~~k 446 (597)
..++|+-.-+|.-+|..+...|+|+.++
T Consensus 250 ~~l~~e~~~K~~k~R~~~~~~~~K~~~~ 277 (321)
T PF07946_consen 250 FKLSPEAKKKAKKNREEEEEKILKEAHQ 277 (321)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777766666666666666553
No 96
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.08 E-value=27 Score=41.95 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=9.3
Q ss_pred CHHHHHHHHhcCCCCCHHHH
Q 007584 150 DLGTVKTRLDRNLYSVSDEF 169 (597)
Q Consensus 150 DL~TIkkKL~~~~Y~S~~EF 169 (597)
|+..+-.++..|.+-++.+|
T Consensus 70 Di~~~l~r~~~g~~l~~~eL 89 (782)
T PRK00409 70 DIDDALKRAEKGGVLSGDEL 89 (782)
T ss_pred cHHHHHHHHhCCCCCCHHHH
Confidence 34444445554444444443
No 97
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=66.62 E-value=4.3 Score=37.12 Aligned_cols=36 Identities=6% Similarity=0.031 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+.++||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 24 ~~s~~F~~pv~~~-~~pdY~~iIk~PmdL~tI~~kl~ 59 (112)
T cd05510 24 EHSTPFLTKVSKR-EAPDYYDIIKKPMDLGTMLKKLK 59 (112)
T ss_pred ccccchhcCCChh-hcCCHHHHhcCccCHHHHHHHHh
Confidence 3467888888765 57899999999999999999885
No 98
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=66.49 E-value=4.9 Score=36.73 Aligned_cols=36 Identities=0% Similarity=-0.053 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+..+||..+|++. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 19 ~~~~~F~~pv~~~-~~pdY~~vI~~PmdL~tI~~kl~ 54 (112)
T cd05528 19 KRFNAFTKPVDEE-EVPDYYEIIKQPMDLQTILQKLD 54 (112)
T ss_pred CCchhhcCCCCcc-ccCcHHHHHcCCCCHHHHHHHHc
Confidence 4457888888766 47899999999999999998886
No 99
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=66.24 E-value=40 Score=33.45 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=12.2
Q ss_pred ccCCCChHHHHHHHHHhhhhh
Q 007584 417 LDVQMSPKKALRAAMLKSRFA 437 (597)
Q Consensus 417 ~~~~~sp~K~~RAA~lk~rfa 437 (597)
+..-.+|+-|-|.-.=|.|-|
T Consensus 15 saGTtdaEEAtkiLAEkRRlA 35 (171)
T PF05672_consen 15 SAGTTDAEEATKILAEKRRLA 35 (171)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 344566777766655555543
No 100
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=65.67 E-value=32 Score=39.24 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHhh
Q 007584 523 HNLEILKELEMLS 535 (597)
Q Consensus 523 ~~~~~~~dle~l~ 535 (597)
-.+.+|+||..|.
T Consensus 454 kqlklmed~dv~k 466 (708)
T KOG3654|consen 454 KQLKLMEDLDVLK 466 (708)
T ss_pred HHHHHHHhhcccC
Confidence 4678899998654
No 101
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.78 E-value=32 Score=36.59 Aligned_cols=9 Identities=44% Similarity=0.342 Sum_probs=4.4
Q ss_pred HHHHHHhhc
Q 007584 528 LKELEMLSG 536 (597)
Q Consensus 528 ~~dle~l~~ 536 (597)
-|++|.|..
T Consensus 396 qkeeeklk~ 404 (445)
T KOG2891|consen 396 QKEEEKLKA 404 (445)
T ss_pred hhHHHHHHH
Confidence 445555543
No 102
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=64.33 E-value=28 Score=40.00 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHH----HHHHHHHHHHHHHHHHHH--HHHHHHH
Q 007584 457 PVKLQQEKERLE----QRQREEKARIEAQIKAAE--AASRMKA 493 (597)
Q Consensus 457 p~~~~~e~~~~e----~~~~ee~ar~~a~~~a~e--~~~~~~~ 493 (597)
-..+++++++.| +++++|++|+||++++++ ++.|+++
T Consensus 199 l~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~ 241 (591)
T KOG2412|consen 199 LQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKE 241 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 445666666544 556778889998877653 3444443
No 103
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=64.29 E-value=5.9 Score=35.39 Aligned_cols=35 Identities=0% Similarity=-0.174 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
...+|..+|.+ ...|+|+.+|+.|||+.+|+.+|.
T Consensus 18 ~~~~F~~PV~~-~~~pdY~~vIk~PmDL~tI~~kl~ 52 (98)
T cd05513 18 PHGFFAFPVTD-FIAPGYSSIIKHPMDFSTMKEKIK 52 (98)
T ss_pred ccccccCcCCc-cccccHHHHHcCccCHHHHHHHHh
Confidence 35567777764 457899999999999999998885
No 104
>PLN02316 synthase/transferase
Probab=63.14 E-value=15 Score=45.38 Aligned_cols=38 Identities=42% Similarity=0.457 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 458 VKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIEL 497 (597)
Q Consensus 458 ~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~ 497 (597)
++|.+|.++.+ |+.||+.|. ++.|||++|-+.++.+|-
T Consensus 259 ~~la~e~ae~~-~~~ee~~r~-~~~kaa~~a~~a~akae~ 296 (1036)
T PLN02316 259 EKLAKEEAERE-RQAEEQRRR-EEEKAAMEADRAQAKAEV 296 (1036)
T ss_pred HHHHHHHHHHH-HHHHHHHHH-HHHhhhhhhhhhhhhHHH
Confidence 34444444433 344444433 334555555554444443
No 105
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=62.67 E-value=6.1 Score=35.55 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+.++||..+|.+ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 20 ~~s~~F~~pv~~--~~p~Y~~iI~~PmdL~tI~~kL~~ 55 (109)
T cd05502 20 ELSLPFHEPVSP--SVPNYYKIIKTPMDLSLIRKKLQP 55 (109)
T ss_pred CCChhhcCCCCC--CCCCHHHHCCCCccHHHHHHHHhc
Confidence 446778777776 688999999999999999999984
No 106
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=62.48 E-value=36 Score=34.23 Aligned_cols=13 Identities=31% Similarity=0.527 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 007584 500 QREKEREAARVAL 512 (597)
Q Consensus 500 ~r~~~~e~~r~~~ 512 (597)
++++|+|+-|+++
T Consensus 107 q~q~EEEKRrqki 119 (190)
T PF06936_consen 107 QKQEEEEKRRQKI 119 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555554
No 107
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=62.01 E-value=6.2 Score=34.83 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+...||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 16 ~~~~~F~~pv~~~-~~p~Y~~iIk~PmdL~tI~~kl~ 51 (97)
T cd05503 16 EDAWPFLEPVNTK-LVPGYRKIIKKPMDFSTIREKLE 51 (97)
T ss_pred CCchhhcCCCCcc-ccCCHHHHhCCCCCHHHHHHHHc
Confidence 4567888888765 46899999999999999998885
No 108
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=59.23 E-value=82 Score=30.64 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=4.6
Q ss_pred HHhhhhhhh
Q 007584 440 ILKAQQRTL 448 (597)
Q Consensus 440 IlKA~~k~l 448 (597)
+|..|+...
T Consensus 32 ~LeeR~~~I 40 (154)
T PRK06568 32 SLDAKILEV 40 (154)
T ss_pred HHHHHHHHH
Confidence 445565553
No 109
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=59.22 E-value=39 Score=29.76 Aligned_cols=43 Identities=37% Similarity=0.468 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 468 EQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQ 513 (597)
Q Consensus 468 e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~~r~~~~e~~r~~~~ 513 (597)
.||-++|+-.--|+.+|.|-..|.++-. -+-|+|-|.-|.+|+
T Consensus 40 krrLkeEkKkAKAeqrA~EfEqRakehq---ErDEkElEERrKALe 82 (86)
T PF15437_consen 40 KRRLKEEKKKAKAEQRAREFEQRAKEHQ---ERDEKELEERRKALE 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh
Confidence 3444555555555555554443333221 123344455566664
No 110
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=59.21 E-value=7.1 Score=35.55 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+..+||..+|.++. -|+|+.+++.|||+.+|+.+|.
T Consensus 16 ~~s~~F~~pv~~~~-~p~Y~~~I~~PmdL~tI~~kl~ 51 (112)
T cd05511 16 PDSWPFHTPVNKKK-VPDYYKIIKRPMDLQTIRKKIS 51 (112)
T ss_pred CCchhhcCCCChhh-cccHHHHhcCCCCHHHHHHHHh
Confidence 45678888887764 7899999999999999998886
No 111
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=59.15 E-value=8.5 Score=34.28 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCc-ccchhhhhhccccchhHHHhhhcc
Q 007584 239 CPKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 239 ~~k~~P~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.+..+||..+|.+.. .-|+|+.+++.|+|+.+|+.+|..
T Consensus 19 ~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~ 58 (103)
T cd05500 19 LKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKS 58 (103)
T ss_pred CCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhc
Confidence 455789999998754 689999999999999999998863
No 112
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=58.07 E-value=1.2e+02 Score=29.04 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=4.1
Q ss_pred Hhhhhhhh
Q 007584 441 LKAQQRTL 448 (597)
Q Consensus 441 lKA~~k~l 448 (597)
+..|+...
T Consensus 51 l~~R~~~I 58 (156)
T CHL00118 51 LDERKEYI 58 (156)
T ss_pred HHHHHHHH
Confidence 44555554
No 113
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=56.77 E-value=9 Score=34.10 Aligned_cols=36 Identities=0% Similarity=-0.121 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+..++|..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 17 ~~~~~F~~pVd~~-~~pdY~~iIk~PmDL~tI~~kl~ 52 (98)
T cd05512 17 DTAEIFSEPVDLS-EVPDYLDHIKQPMDFSTMRKKLE 52 (98)
T ss_pred CCchhhcCCCCcc-ccCCHHHHhcCCcCHHHHHHHHh
Confidence 3456677777654 47899999999999999998885
No 114
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.66 E-value=37 Score=37.94 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=6.2
Q ss_pred HHHHHHHHhHHhhh
Q 007584 200 LFDIKWKSLEEKWS 213 (597)
Q Consensus 200 ~Fek~~k~i~~k~~ 213 (597)
+|...-.-+..++.
T Consensus 138 wF~s~~s~le~nFa 151 (440)
T KOG2357|consen 138 WFGSLRSLLEENFA 151 (440)
T ss_pred HHHHHHHHHHHhhh
Confidence 34444444444443
No 115
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=55.30 E-value=1.4e+02 Score=28.26 Aligned_cols=8 Identities=0% Similarity=0.297 Sum_probs=3.6
Q ss_pred HHhhhhhh
Q 007584 440 ILKAQQRT 447 (597)
Q Consensus 440 IlKA~~k~ 447 (597)
++..|+..
T Consensus 35 ~l~~R~~~ 42 (141)
T PRK08476 35 FMDNRNAS 42 (141)
T ss_pred HHHHHHHH
Confidence 34445444
No 116
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=55.02 E-value=12 Score=32.90 Aligned_cols=36 Identities=3% Similarity=-0.188 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCC-cccchhhhhhccccchhHHHhhhc
Q 007584 241 KTPPLHSTLSSK-KSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 241 k~~P~~~~v~~K-~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
..++|..+|.+. ...|+|+.+++.|+|+++|+.+|.
T Consensus 17 ~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~ 53 (99)
T cd05506 17 WGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLE 53 (99)
T ss_pred CCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHh
Confidence 467888887764 357999999999999999998886
No 117
>PTZ00491 major vault protein; Provisional
Probab=54.61 E-value=47 Score=40.24 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHhhcCCCCccccCCchHHHHhh
Q 007584 507 AARVALQKMERTVEIEHNLEILKELEMLSGCCLSPHLLNGSEAQKRAF 554 (597)
Q Consensus 507 ~~r~~~~~~~~t~~~~~~~~~~~dle~l~~~~~~~~~~~~~~~~~~~~ 554 (597)
.+..++++-....+|+ +..|-.=++-|+.-++..-+..+|+...--|
T Consensus 771 ~~~le~~k~~~la~ie-~~kf~~~v~aig~~T~~~iA~agpe~qaklL 817 (850)
T PTZ00491 771 QNELEIAKAKELADIE-ATKFERIVEALGRETLIAIARAGPELQAKLL 817 (850)
T ss_pred HhHHHHHHHHHHHHHH-HHHHHHHHHhhChHHHHHHHHhCcHhHHHHH
Confidence 4445566667777777 6777766666765444333488888654333
No 118
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=54.40 E-value=69 Score=35.55 Aligned_cols=75 Identities=31% Similarity=0.363 Sum_probs=37.9
Q ss_pred hHHHHhhhhhhhcccCCCCChhhhHHHHHHHHHH-----HHHHHHHHHHHHHHH----HHHHHHHH--HH--HHHHH---
Q 007584 437 ADTILKAQQRTLLDHGDKADPVKLQQEKERLEQR-----QREEKARIEAQIKAA----EAASRMKA--EI--ELKKQ--- 500 (597)
Q Consensus 437 adtIlKA~~k~ll~~g~k~dp~~~~~e~~~~e~~-----~~ee~ar~~a~~~a~----e~~~~~~~--~~--~~~~~--- 500 (597)
||++-.|||.+ +|++.|.+.|+. +-.|||--||++++| |-+|..+- +| +.|++
T Consensus 292 ~~I~~VarENs-----------~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 292 AGIERVARENS-----------DLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred hhHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888866 355555555554 223444455554443 11222111 11 12222
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 007584 501 REKEREAARVALQKMERTVEIE 522 (597)
Q Consensus 501 r~~~~e~~r~~~~~~~~t~~~~ 522 (597)
-++|=|..++++++++-.|+|.
T Consensus 361 L~keLeekkreleql~~q~~v~ 382 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVK 382 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 2334455666677777777776
No 119
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=53.84 E-value=13 Score=34.72 Aligned_cols=40 Identities=0% Similarity=-0.171 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 238 NCPKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 238 ~~~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
..+..+||..+|.++...|+|+.+|+.|||+.+|+.+|..
T Consensus 41 ~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~ 80 (128)
T cd05529 41 QLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLEN 80 (128)
T ss_pred cCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhc
Confidence 3455778888887763678999999999999999998863
No 120
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=53.71 E-value=1.5e+02 Score=28.89 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 007584 502 EKEREAARVAL 512 (597)
Q Consensus 502 ~~~~e~~r~~~ 512 (597)
+.|+++|..++
T Consensus 110 e~Ek~~Al~el 120 (154)
T PRK06568 110 QNQKSTASKEL 120 (154)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 121
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=52.59 E-value=1.1e+02 Score=34.01 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=41.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 452 GDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIELKKQRE 502 (597)
Q Consensus 452 g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~~r~ 502 (597)
+=.+|-+++-+|-.+|+|..-|-...++|-..|.|.+.+.+++.+++.+.|
T Consensus 289 ~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqae 339 (442)
T PF06637_consen 289 SLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAE 339 (442)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999988888888888888888888887777765544
No 122
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=52.08 E-value=11 Score=33.36 Aligned_cols=36 Identities=6% Similarity=0.014 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+..+||..+|.+.. .|+|+.+++.|||+.+|+.+|.
T Consensus 17 ~~a~~F~~pv~~~~-~p~Y~~~I~~PmdL~tI~~kl~ 52 (101)
T cd05509 17 KSAWPFLEPVDKEE-APDYYDVIKKPMDLSTMEEKLE 52 (101)
T ss_pred CCchhhcCCCChhh-cCCHHHHhcCCCCHHHHHHHHh
Confidence 34567777777664 7899999999999999998886
No 123
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.04 E-value=65 Score=38.78 Aligned_cols=8 Identities=25% Similarity=0.065 Sum_probs=4.6
Q ss_pred HHHHhhhh
Q 007584 438 DTILKAQQ 445 (597)
Q Consensus 438 dtIlKA~~ 445 (597)
+.|-.|++
T Consensus 497 ~ii~~A~~ 504 (771)
T TIGR01069 497 FIIEQAKT 504 (771)
T ss_pred HHHHHHHH
Confidence 45555665
No 124
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.28 E-value=1.6e+02 Score=28.49 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=6.9
Q ss_pred HHHHhhhhhhh
Q 007584 438 DTILKAQQRTL 448 (597)
Q Consensus 438 dtIlKA~~k~l 448 (597)
-.+|..|++.+
T Consensus 45 ~~~l~~R~~~I 55 (174)
T PRK07352 45 GKILEERREAI 55 (174)
T ss_pred HHHHHHHHHHH
Confidence 45566677665
No 125
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=51.17 E-value=1.5e+02 Score=29.77 Aligned_cols=11 Identities=9% Similarity=0.335 Sum_probs=6.2
Q ss_pred HHHHhhhhhhh
Q 007584 438 DTILKAQQRTL 448 (597)
Q Consensus 438 dtIlKA~~k~l 448 (597)
-.+|..|+...
T Consensus 74 ~~~L~~R~~~I 84 (205)
T PRK06231 74 QRFLNKRKELI 84 (205)
T ss_pred HHHHHHHHHHH
Confidence 34555666664
No 126
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=51.02 E-value=12 Score=34.37 Aligned_cols=35 Identities=6% Similarity=-0.035 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
..+||..++.+ ...|+|+.+|+.|||+.+|+.+|.
T Consensus 29 ~s~~F~~pvd~-~~~pdY~~vI~~PmDL~tI~~kL~ 63 (115)
T cd05504 29 DSWPFLRPVSK-IEVPDYYDIIKKPMDLGTIKEKLN 63 (115)
T ss_pred CchhhcCCCCc-cccccHHHHhcCcccHHHHHHHHc
Confidence 35677777764 457899999999999999998886
No 127
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=50.44 E-value=35 Score=37.02 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=13.6
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHH
Q 007584 452 GDKADPVKLQQEKERLEQRQREEKA 476 (597)
Q Consensus 452 g~k~dp~~~~~e~~~~e~~~~ee~a 476 (597)
|+..|--++++++++.+.++-.+|+
T Consensus 86 ~ey~~~~~~~rer~E~eL~eLkekq 110 (361)
T KOG3634|consen 86 GEYEDFDRIEREREEKELKELKEKQ 110 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666665555544443
No 128
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=49.48 E-value=1.3e+02 Score=29.56 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=8.7
Q ss_pred hhhHHHHhhhhhhh
Q 007584 435 RFADTILKAQQRTL 448 (597)
Q Consensus 435 rfadtIlKA~~k~l 448 (597)
++--.++..|+...
T Consensus 47 kPI~~~l~~R~~~I 60 (184)
T CHL00019 47 GVLSDLLDNRKQTI 60 (184)
T ss_pred hHHHHHHHHHHHHH
Confidence 44556666777665
No 129
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=49.46 E-value=1.6e+02 Score=30.30 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 007584 526 EILKELE 532 (597)
Q Consensus 526 ~~~~dle 532 (597)
+|+++|.
T Consensus 152 ~~i~~l~ 158 (246)
T TIGR03321 152 VFVQRLR 158 (246)
T ss_pred HHHHHhh
Confidence 3444443
No 130
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=49.13 E-value=2.2 Score=49.56 Aligned_cols=74 Identities=8% Similarity=-0.001 Sum_probs=64.6
Q ss_pred CCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 007584 125 WVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNL 200 (597)
Q Consensus 125 ~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~ 200 (597)
..|+.-++. ..+|.||.+++-||.+.....++..+.|.....|..|..++|.|+..||....-++..+..|.+.
T Consensus 214 er~w~~~dg--~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPDG--EKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCccc--ccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 445554443 36999999999999999999999999999999999999999999999999988888888777654
No 131
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=49.00 E-value=1.2e+02 Score=30.68 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=19.4
Q ss_pred HHHHhhhhhhhcccCCCCChhhhHHHHHHHHHHHHH--HHHHHHHHHH
Q 007584 438 DTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQRE--EKARIEAQIK 483 (597)
Q Consensus 438 dtIlKA~~k~ll~~g~k~dp~~~~~e~~~~e~~~~e--e~ar~~a~~~ 483 (597)
-.||..|+..+.+ +-.+-++++.|-+++...-++ ..||.+|+..
T Consensus 79 ~~vLe~R~~~I~~--~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 79 GGIIETRRDRIAQ--DLDQAARLKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556655433 333334444444443333222 4455444443
No 132
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=48.64 E-value=2.2e+02 Score=27.94 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHHH
Q 007584 459 KLQQEKERLEQRQRE 473 (597)
Q Consensus 459 ~~~~e~~~~e~~~~e 473 (597)
|-++..++.+++.+|
T Consensus 70 k~r~k~~E~err~~E 84 (157)
T PF15236_consen 70 KRRQKQEEEERRRRE 84 (157)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 133
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=48.43 E-value=61 Score=37.15 Aligned_cols=6 Identities=67% Similarity=0.971 Sum_probs=3.6
Q ss_pred HHHHHh
Q 007584 428 RAAMLK 433 (597)
Q Consensus 428 RAA~lk 433 (597)
|||+|-
T Consensus 393 raalle 398 (708)
T KOG3654|consen 393 RAALLE 398 (708)
T ss_pred HHHHHH
Confidence 666653
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=48.40 E-value=1.1e+02 Score=37.71 Aligned_cols=14 Identities=36% Similarity=0.537 Sum_probs=7.6
Q ss_pred ccCCC-CChhhhHHH
Q 007584 450 DHGDK-ADPVKLQQE 463 (597)
Q Consensus 450 ~~g~k-~dp~~~~~e 463 (597)
..+++ .++..+.++
T Consensus 797 ~~~d~r~~~~~~~~~ 811 (1018)
T KOG2002|consen 797 KNGDKRISKTVIAQE 811 (1018)
T ss_pred hcCCCCCCHHHHHHH
Confidence 33555 566665554
No 135
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=48.32 E-value=1.5e+02 Score=28.77 Aligned_cols=9 Identities=11% Similarity=0.619 Sum_probs=4.1
Q ss_pred HHhhhhhhh
Q 007584 440 ILKAQQRTL 448 (597)
Q Consensus 440 IlKA~~k~l 448 (597)
++..|+...
T Consensus 46 ~l~~R~~~I 54 (173)
T PRK13453 46 VMDKRERDI 54 (173)
T ss_pred HHHHHHHHH
Confidence 344455443
No 136
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=47.88 E-value=51 Score=37.38 Aligned_cols=9 Identities=11% Similarity=-0.090 Sum_probs=4.0
Q ss_pred cCCCChhhh
Q 007584 557 AHFKNPLER 565 (597)
Q Consensus 557 ~~~~~~le~ 565 (597)
|-..++|.-
T Consensus 400 F~~s~~~q~ 408 (460)
T KOG1363|consen 400 FLKSDKLQI 408 (460)
T ss_pred eecccchhH
Confidence 333455544
No 137
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=47.71 E-value=2.1e+02 Score=26.41 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=24.1
Q ss_pred hhhhhHHHHhhhhhhhcccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 433 KSRFADTILKAQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRM 491 (597)
Q Consensus 433 k~rfadtIlKA~~k~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~ 491 (597)
..|-+.-.+|++++.| +++.+...++-..++.+-++++|+..|.
T Consensus 38 ~~R~~~~~~K~~ekEl---------------KeEKe~er~~r~~~~kerr~~keEkeR~ 81 (108)
T PF03879_consen 38 EKRLELKAIKEKEKEL---------------KEEKEAERQRRIQRIKERRKRKEEKERY 81 (108)
T ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888887 4444444444444455444555444443
No 138
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=47.49 E-value=13 Score=45.13 Aligned_cols=45 Identities=42% Similarity=0.536 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 007584 469 QRQREEKARIEAQIKAAEAASRMKA-EIELKKQREKEREAARVALQ 513 (597)
Q Consensus 469 ~~~~ee~ar~~a~~~a~e~~~~~~~-~~~~~~~r~~~~e~~r~~~~ 513 (597)
+-.-+|||+.+|+++|+|+-+|.++ +.+..++|+.+||+.|-+-+
T Consensus 816 ~~~~~~kak~aa~~ra~er~~~~r~re~e~~~e~e~~~~aersak~ 861 (1229)
T KOG2133|consen 816 RSNVEEKAKRAAEQRARERSERERERETELEREREVEREAERSAKE 861 (1229)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhcccccccccchHHhhhhh
Confidence 3445689999999999998887765 44566778888888877666
No 139
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=47.06 E-value=15 Score=32.52 Aligned_cols=38 Identities=3% Similarity=-0.089 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCC-cccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSK-KSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K-~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+-.+||..+|.+. ..-|+|+.+++.|+|+.+|+.+|..
T Consensus 19 ~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~ 57 (102)
T cd05499 19 AYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQN 57 (102)
T ss_pred cccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcC
Confidence 3467888888764 3678999999999999999988863
No 140
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=46.98 E-value=1.6e+02 Score=27.79 Aligned_cols=12 Identities=25% Similarity=0.102 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 007584 499 KQREKEREAARV 510 (597)
Q Consensus 499 ~~r~~~~e~~r~ 510 (597)
..-+.+.++|+.
T Consensus 99 ~~~~~~~~~a~~ 110 (141)
T PRK08476 99 AELESKYEAFAK 110 (141)
T ss_pred HHHHHHHHHHHH
Confidence 333333333433
No 141
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=45.85 E-value=1.8e+02 Score=27.77 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=3.0
Q ss_pred Hhhhhhh
Q 007584 441 LKAQQRT 447 (597)
Q Consensus 441 lKA~~k~ 447 (597)
+..|+..
T Consensus 37 l~~R~~~ 43 (164)
T PRK14471 37 VKEREDS 43 (164)
T ss_pred HHHHHHH
Confidence 3344444
No 142
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=45.63 E-value=19 Score=31.85 Aligned_cols=38 Identities=3% Similarity=0.001 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCc-ccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+-.+||..+|.+.. .-|+|+.+|+.|||+.+|+.+|..
T Consensus 19 ~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~ 57 (102)
T cd05498 19 AYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDN 57 (102)
T ss_pred cccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHcc
Confidence 44678888887753 579999999999999999988863
No 143
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=45.21 E-value=1.6e+02 Score=30.52 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=4.5
Q ss_pred HHhhhhhhh
Q 007584 440 ILKAQQRTL 448 (597)
Q Consensus 440 IlKA~~k~l 448 (597)
++..|++..
T Consensus 33 ~l~eR~~~I 41 (250)
T PRK14474 33 VMKKRQQRI 41 (250)
T ss_pred HHHHHHHHH
Confidence 444555554
No 144
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=45.05 E-value=1.9e+02 Score=30.87 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 461 QQEKERLEQRQREEKARIEAQIKAA 485 (597)
Q Consensus 461 ~~e~~~~e~~~~ee~ar~~a~~~a~ 485 (597)
++..+++-+.|.|--+|.|+-+++-
T Consensus 128 r~~n~e~lk~QEes~~rqE~~Rr~T 152 (276)
T PF12037_consen 128 RRRNEELLKMQEESVIRQEQMRRAT 152 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555444444444444
No 145
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=44.71 E-value=2.4e+02 Score=32.90 Aligned_cols=103 Identities=30% Similarity=0.419 Sum_probs=57.4
Q ss_pred HHHHhhhhhHHHHh--------hhhhhhcccCCCCC---hhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 007584 429 AAMLKSRFADTILK--------AQQRTLLDHGDKAD---PVKLQQEKERLEQRQRE---EKARIEAQIKAAEAASRMKAE 494 (597)
Q Consensus 429 AA~lk~rfadtIlK--------A~~k~ll~~g~k~d---p~~~~~e~~~~e~~~~e---e~ar~~a~~~a~e~~~~~~~~ 494 (597)
+|=|+.+-||.-+. +|+|+-|.|.-..+ -++|.+|.++++..-+| |..+|+.+....-.+.|-+-
T Consensus 334 ~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vql- 412 (546)
T PF07888_consen 334 AAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQL- 412 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-
Confidence 66677777777543 45565555544444 35667777666655444 45556666543333332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHh
Q 007584 495 IELKKQREKEREAARVALQKMERTVEIEHNLEILKELEML 534 (597)
Q Consensus 495 ~~~~~~r~~~~e~~r~~~~~~~~t~~~~~~~~~~~dle~l 534 (597)
....|++..-++..++.+|||.==..++=+++.+++.|
T Consensus 413 --sE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 413 --SENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234444556666777888866666666655555444
No 146
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.19 E-value=1.9e+02 Score=33.26 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.2
Q ss_pred HHHHHH
Q 007584 528 LKELEM 533 (597)
Q Consensus 528 ~~dle~ 533 (597)
+..|+.
T Consensus 377 ~~~l~~ 382 (582)
T PF09731_consen 377 LAKLAE 382 (582)
T ss_pred HHHHHH
Confidence 333333
No 147
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=43.53 E-value=83 Score=27.99 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=44.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 007584 160 RNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 160 ~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k 211 (597)
...|.|..-|...|..|-..-..++..+..+..+|..|...|.+.|+++..-
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~~ 54 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNLL 54 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3568899999999988888888888778899999999999999999976543
No 148
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.11 E-value=1.4e+02 Score=35.84 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=4.6
Q ss_pred hcccccCC
Q 007584 567 GLFMKSDY 574 (597)
Q Consensus 567 gl~~k~d~ 574 (597)
|..++.|.
T Consensus 636 ~~~~~~d~ 643 (697)
T PF09726_consen 636 GQLRKKDK 643 (697)
T ss_pred HHHHHHHH
Confidence 45666665
No 149
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=42.72 E-value=1.5e+02 Score=30.77 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 465 ERLEQRQREEKARIEAQIKAAEAASRM 491 (597)
Q Consensus 465 ~~~e~~~~ee~ar~~a~~~a~e~~~~~ 491 (597)
++..++.++++.+|++.+..++++.++
T Consensus 39 eek~k~aeeea~~Le~k~~eaee~~~r 65 (246)
T PF00769_consen 39 EEKLKQAEEEAEELEQKRQEAEEEKQR 65 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666777766666655544
No 150
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=41.95 E-value=23 Score=32.10 Aligned_cols=23 Identities=4% Similarity=-0.117 Sum_probs=21.3
Q ss_pred ccchhhhhhccccchhHHHhhhc
Q 007584 254 SKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 254 ~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
..|+|+.+|+.|||+.+|+.+|.
T Consensus 29 ~~pdY~~iIk~PMDL~tI~~kL~ 51 (102)
T cd05501 29 YIRDYCQGIKEPMWLNKVKERLN 51 (102)
T ss_pred CCCchHHHcCCCCCHHHHHHHHc
Confidence 57899999999999999999987
No 151
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=41.83 E-value=2.3e+02 Score=27.09 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.5
Q ss_pred Hhhhhhhh
Q 007584 441 LKAQQRTL 448 (597)
Q Consensus 441 lKA~~k~l 448 (597)
|..|+...
T Consensus 37 l~~R~~~I 44 (164)
T PRK14473 37 LNERTRRI 44 (164)
T ss_pred HHHHHHHH
Confidence 34454443
No 152
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=41.31 E-value=3.2e+02 Score=26.62 Aligned_cols=9 Identities=33% Similarity=0.268 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 007584 524 NLEILKELE 532 (597)
Q Consensus 524 ~~~~~~dle 532 (597)
...||+.|-
T Consensus 101 y~~~l~~li 109 (188)
T PRK02292 101 REELTKSLL 109 (188)
T ss_pred HHHHHHHHH
Confidence 334554443
No 153
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=41.15 E-value=95 Score=35.32 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=11.5
Q ss_pred hhhhhhhhhHHHHHHHHHhhc
Q 007584 516 ERTVEIEHNLEILKELEMLSG 536 (597)
Q Consensus 516 ~~t~~~~~~~~~~~dle~l~~ 536 (597)
++.+.....++++=++.-.+|
T Consensus 397 ~RrF~~s~~~q~l~~~v~~~~ 417 (460)
T KOG1363|consen 397 ERRFLKSDKLQILYDYVDSNG 417 (460)
T ss_pred eeeeecccchhHHHHHHHhcc
Confidence 345555556666555555555
No 154
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=40.42 E-value=2e+02 Score=29.81 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.4
Q ss_pred HHHHHH
Q 007584 527 ILKELE 532 (597)
Q Consensus 527 ~~~dle 532 (597)
|++.|.
T Consensus 153 ~i~~l~ 158 (250)
T PRK14474 153 FIARLE 158 (250)
T ss_pred HHHHhc
Confidence 444443
No 155
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=40.32 E-value=9.3 Score=38.25 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007584 496 ELKKQREKEREAARVALQKMERTVEI 521 (597)
Q Consensus 496 ~~~~~r~~~~e~~r~~~~~~~~t~~~ 521 (597)
++++.++..+.++-.+.++|..++.+
T Consensus 59 ee~~~~eE~e~rE~eEy~k~K~~f~v 84 (188)
T PF09756_consen 59 EERKAKEEKERREQEEYEKWKSAFSV 84 (188)
T ss_dssp --------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 33444443334444566777776655
No 156
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=40.13 E-value=2.9e+02 Score=28.09 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=5.6
Q ss_pred hHHHHHHHHH
Q 007584 524 NLEILKELEM 533 (597)
Q Consensus 524 ~~~~~~dle~ 533 (597)
+..||+.|=.
T Consensus 107 d~~~l~~lI~ 116 (207)
T PRK01005 107 DPEVSAKLIQ 116 (207)
T ss_pred CHHHHHHHHH
Confidence 3466666544
No 157
>PRK12705 hypothetical protein; Provisional
Probab=40.10 E-value=4.9e+02 Score=30.13 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=4.6
Q ss_pred HHHHHHhhcC
Q 007584 528 LKELEMLSGC 537 (597)
Q Consensus 528 ~~dle~l~~~ 537 (597)
...||.++|.
T Consensus 129 ~~~Le~ia~l 138 (508)
T PRK12705 129 DNELYRVAGL 138 (508)
T ss_pred HHHHHHHhCC
Confidence 3444555443
No 158
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=39.36 E-value=2.5e+02 Score=27.63 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=6.2
Q ss_pred HHHHhhhhhhh
Q 007584 438 DTILKAQQRTL 448 (597)
Q Consensus 438 dtIlKA~~k~l 448 (597)
-.|+..|+..+
T Consensus 57 ~~~l~~R~~~I 67 (181)
T PRK13454 57 GAVLAERQGTI 67 (181)
T ss_pred HHHHHHHHHHH
Confidence 34556666664
No 159
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=38.92 E-value=2.6e+02 Score=27.06 Aligned_cols=9 Identities=11% Similarity=0.206 Sum_probs=4.5
Q ss_pred HHhhhhhhh
Q 007584 440 ILKAQQRTL 448 (597)
Q Consensus 440 IlKA~~k~l 448 (597)
+|..|+...
T Consensus 44 ~l~~R~~~I 52 (173)
T PRK13460 44 ALDERASGV 52 (173)
T ss_pred HHHHHHHHH
Confidence 444555554
No 160
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.49 E-value=3.4e+02 Score=28.93 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHH
Q 007584 507 AARVALQKMERTVEIEHNLEILK 529 (597)
Q Consensus 507 ~~r~~~~~~~~t~~~~~~~~~~~ 529 (597)
++|.+..+|+.| .|+.++.|++
T Consensus 234 ~~rl~~l~~~~~-~l~k~~~~~~ 255 (269)
T PF05278_consen 234 KGRLGELEMEST-RLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH
Confidence 666666666654 5666766664
No 161
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=38.11 E-value=2.4e+02 Score=27.67 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 007584 461 QQEKERLEQRQREEKA 476 (597)
Q Consensus 461 ~~e~~~~e~~~~ee~a 476 (597)
++|.++-|.|-..|++
T Consensus 82 ~~EE~~EE~Rl~rere 97 (157)
T PF15236_consen 82 RREEEEEEERLARERE 97 (157)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3333333333333333
No 162
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=38.07 E-value=2.9e+02 Score=27.33 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=15.4
Q ss_pred CCChHH---------HHHHHH--HhhhhhHHHHhhhh
Q 007584 420 QMSPKK---------ALRAAM--LKSRFADTILKAQQ 445 (597)
Q Consensus 420 ~~sp~K---------~~RAA~--lk~rfadtIlKA~~ 445 (597)
+++|+- .||..| ||.-|-+-+++-+.
T Consensus 20 ~~~~~E~~el~~~~~~Yr~~m~alR~~f~ee~~~~~~ 56 (170)
T PF14943_consen 20 PVDPEEVKELKRRYNNYRTQMRALRSEFREEVLRKKY 56 (170)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677753 355554 66666666665444
No 163
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.94 E-value=4.4e+02 Score=26.56 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=3.6
Q ss_pred hHHHHhhhh
Q 007584 437 ADTILKAQQ 445 (597)
Q Consensus 437 adtIlKA~~ 445 (597)
++.|..|.+
T Consensus 85 ~~~L~~Ae~ 93 (205)
T PRK06231 85 EAEINQANE 93 (205)
T ss_pred HHHHHHHHH
Confidence 334444433
No 164
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=37.90 E-value=20 Score=45.80 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcccccccc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAKPAQNLS 283 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk~le~l~ 283 (597)
.+|||+.+|+++-+ |+||.+|+.|||+.+|..++++..=..+
T Consensus 1318 ~awPFlepVn~~~v-p~Y~~IIk~Pmdl~tir~k~~~~~Y~~~ 1359 (1404)
T KOG1245|consen 1318 AAWPFLEPVNPKEV-PDYYDIIKKPMDLSTIREKLSKGIYPSP 1359 (1404)
T ss_pred hcchhhccCChhhc-ccHHHHhcChhHHHHHHHHHhcccCCCH
Confidence 37999999997665 5999999999999999999987665444
No 165
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=37.46 E-value=3e+02 Score=26.15 Aligned_cols=9 Identities=11% Similarity=0.527 Sum_probs=3.8
Q ss_pred HHhhhhhhh
Q 007584 440 ILKAQQRTL 448 (597)
Q Consensus 440 IlKA~~k~l 448 (597)
+|..|+...
T Consensus 33 ~l~~R~~~I 41 (159)
T PRK13461 33 VIDSRQSEI 41 (159)
T ss_pred HHHHHHHHH
Confidence 334444443
No 166
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=37.39 E-value=19 Score=32.49 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
++||...+. +...|+|+.+|+.|||+.+|+.+|.
T Consensus 25 s~~F~~~p~-~~~~pdYy~iI~~Pmdl~tI~~kl~ 58 (107)
T cd05516 25 AEVFIQLPS-RKELPEYYELIRKPVDFKKIKERIR 58 (107)
T ss_pred eHHhhcCCC-cccCCCHHHHcCCCCCHHHHHHHHc
Confidence 445555433 3467999999999999999998885
No 167
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=37.12 E-value=2.9e+02 Score=26.76 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=4.8
Q ss_pred HHHhhhhhhh
Q 007584 439 TILKAQQRTL 448 (597)
Q Consensus 439 tIlKA~~k~l 448 (597)
.++..|+...
T Consensus 45 ~~l~~R~~~I 54 (175)
T PRK14472 45 SALEEREKGI 54 (175)
T ss_pred HHHHHHHHHH
Confidence 3444555554
No 168
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=36.97 E-value=21 Score=32.02 Aligned_cols=36 Identities=6% Similarity=-0.122 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+-++||...+. +..-|+|+.+|+.|||+.+|+.+|.
T Consensus 22 ~~a~~F~~~p~-~~~~pdYy~iIk~PmdL~tI~~kl~ 57 (105)
T cd05515 22 RLSLIFMRLPS-KSEYPDYYDVIKKPIDMEKIRSKIE 57 (105)
T ss_pred cccHHhccCCC-cccCCcHHHHcCCCcCHHHHHHHHc
Confidence 34556666543 4456899999999999999998885
No 169
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=36.57 E-value=3.8e+02 Score=25.50 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007584 496 ELKKQREKEREAARVALQ 513 (597)
Q Consensus 496 ~~~~~r~~~~e~~r~~~~ 513 (597)
+++...++..+.++..++
T Consensus 111 ~A~~ea~~~~~~a~~~i~ 128 (156)
T CHL00118 111 QAQKYIDSLLNEATKQLE 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444443333
No 170
>smart00297 BROMO bromo domain.
Probab=36.31 E-value=62 Score=28.15 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.++|..++.+.. .|+|+.++..|+|+.+|+.+|.
T Consensus 25 ~~~F~~~~~~~~-~p~Y~~~i~~P~dl~~I~~kl~ 58 (107)
T smart00297 25 SWPFLKPVDRKE-APDYYDIIKKPMDLSTIKKKLE 58 (107)
T ss_pred chhhccCCChhh-ccCHHHHhcCCCCHHHHHHHHh
Confidence 455665555443 6899999999999999988885
No 171
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=36.12 E-value=2.4e+02 Score=31.33 Aligned_cols=58 Identities=33% Similarity=0.440 Sum_probs=40.9
Q ss_pred cCCCChHHHHHHHHHhhhhhHH-----HHhhhhhhhcccCCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 007584 418 DVQMSPKKALRAAMLKSRFADT-----ILKAQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEA 480 (597)
Q Consensus 418 ~~~~sp~K~~RAA~lk~rfadt-----IlKA~~k~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a 480 (597)
.+.+++|.-..||+=+.|.+.. |+-||.++. . +|.+-|..--++...++.-|++|-+|
T Consensus 3 k~~~~~D~ke~a~ie~RR~~E~eR~~Rifn~r~R~i-G----vD~~aL~~Qv~Ekk~~e~~E~~r~~a 65 (379)
T PF05914_consen 3 KVDLPPDLKEAAAIERRRQREEERQKRIFNARNRTI-G----VDVEALDRQVEEKKQREAAEKEREEA 65 (379)
T ss_pred cccCCccHHHHHHHHHHHHhHHHHHHhccChHHhhh-C----cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789899999999998875 777888774 2 56677766666666666656555443
No 172
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=35.74 E-value=73 Score=37.66 Aligned_cols=14 Identities=50% Similarity=0.563 Sum_probs=8.4
Q ss_pred CChhhhHHHHHHHH
Q 007584 455 ADPVKLQQEKERLE 468 (597)
Q Consensus 455 ~dp~~~~~e~~~~e 468 (597)
.||+-|.+|+|+.+
T Consensus 548 ~~~~~~~~~~~~~~ 561 (651)
T PTZ00399 548 DDKEELQREKEEKE 561 (651)
T ss_pred CCHHHHHHHHHHHH
Confidence 46666666666443
No 173
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=35.64 E-value=4.2e+02 Score=25.69 Aligned_cols=7 Identities=14% Similarity=0.207 Sum_probs=2.9
Q ss_pred Hhhhhhh
Q 007584 441 LKAQQRT 447 (597)
Q Consensus 441 lKA~~k~ 447 (597)
+..|+..
T Consensus 51 l~~R~~~ 57 (167)
T PRK08475 51 YKSRINK 57 (167)
T ss_pred HHHHHHH
Confidence 3344444
No 174
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=35.11 E-value=23 Score=43.13 Aligned_cols=40 Identities=33% Similarity=0.417 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007584 478 IEAQIKAAEAASRMKAEIELKKQREKEREAARVALQKMER 517 (597)
Q Consensus 478 ~~a~~~a~e~~~~~~~~~~~~~~r~~~~e~~r~~~~~~~~ 517 (597)
+|.-+|.||...|.+.+.|..++|++|||++|.+-+....
T Consensus 588 ~ek~RReaEq~~reerERer~~e~~rerer~~~~~r~~k~ 627 (982)
T PF03154_consen 588 VEKARREAEQRAREEREREREREREREREREREAERAAKA 627 (982)
T ss_pred HHHHHhhhhccchhhhhhcccccchhhhhhhhhhhhhhcc
Confidence 4444444443222222222223334444444444444433
No 175
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=35.09 E-value=1.9e+02 Score=25.61 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=20.0
Q ss_pred CChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 007584 455 ADPVKLQQEKERLEQRQREEK-ARIEAQIKAAEAA 488 (597)
Q Consensus 455 ~dp~~~~~e~~~~e~~~~ee~-ar~~a~~~a~e~~ 488 (597)
..|+==|+|+|++|.++..++ -.|.++.+-.|+.
T Consensus 21 ~~~~lSRRERE~iekq~A~erY~klh~~GKT~eak 55 (82)
T PF10252_consen 21 APPELSRREREEIEKQRARERYMKLHAEGKTDEAK 55 (82)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 344555788888887765543 3455655555443
No 176
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=34.87 E-value=24 Score=31.65 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+-+.||...+. +...|+|+.+|+.|||+.+|+.+|..
T Consensus 22 ~~s~pF~~~p~-~~~~PdYy~iI~~PmdL~tI~~kl~~ 58 (103)
T cd05520 22 LLAEPFLKLPS-KRKYPDYYQEIKNPISLQQIRTKLKN 58 (103)
T ss_pred CccHhhhcCCC-cccCCCHHHHcCCCcCHHHHHHHHcc
Confidence 44566766655 45678999999999999999988863
No 177
>PF12848 ABC_tran_2: ABC transporter
Probab=34.68 E-value=2.7e+02 Score=23.25 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 462 QEKERLEQRQREEKARIEAQIKAAE 486 (597)
Q Consensus 462 ~e~~~~e~~~~ee~ar~~a~~~a~e 486 (597)
..+++....+..+....+.+++..+
T Consensus 20 ~~k~~~~~~~~~~~~~~~k~~~~l~ 44 (85)
T PF12848_consen 20 EQKEERRERQERQYEKQQKEIKRLE 44 (85)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444434444444444333
No 178
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.59 E-value=2.1e+02 Score=27.75 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=40.6
Q ss_pred ccCCCChHHHHHHHHHhhhhhHHHHhhhhhhh--------cccCCCCChhhhHHHHHHHHHHH
Q 007584 417 LDVQMSPKKALRAAMLKSRFADTILKAQQRTL--------LDHGDKADPVKLQQEKERLEQRQ 471 (597)
Q Consensus 417 ~~~~~sp~K~~RAA~lk~rfadtIlKA~~k~l--------l~~g~k~dp~~~~~e~~~~e~~~ 471 (597)
.-.+|+||+.--+=-|...|.+.....|++.. |-.+++.|++|++.-..|+...+
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr 102 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLR 102 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 34589999988888899999999988887643 23478888887776555554433
No 179
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=34.15 E-value=3.8e+02 Score=26.20 Aligned_cols=8 Identities=50% Similarity=0.409 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 007584 486 EAASRMKA 493 (597)
Q Consensus 486 e~~~~~~~ 493 (597)
|+|.++.+
T Consensus 93 EEAQrk~a 100 (149)
T PF15346_consen 93 EEAQRKLA 100 (149)
T ss_pred HHHHHHHH
Confidence 33333333
No 180
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=33.95 E-value=65 Score=27.02 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007584 152 GTVKTRLDRNLYSVSDEFVADVRLTFS 178 (597)
Q Consensus 152 ~TIkkKL~~~~Y~S~~EF~~DV~LIF~ 178 (597)
..|+..+..|.|.|..++++|..+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999887654
No 181
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=33.64 E-value=3.6e+02 Score=25.96 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=6.3
Q ss_pred HHHHhhhhhhh
Q 007584 438 DTILKAQQRTL 448 (597)
Q Consensus 438 dtIlKA~~k~l 448 (597)
--+|..|++..
T Consensus 36 ~~~le~R~~~I 46 (167)
T PRK14475 36 AGALDAYAAKI 46 (167)
T ss_pred HHHHHHHHHHH
Confidence 44556666664
No 182
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=33.17 E-value=3.9e+02 Score=24.59 Aligned_cols=7 Identities=0% Similarity=0.192 Sum_probs=2.9
Q ss_pred Hhhhhhh
Q 007584 441 LKAQQRT 447 (597)
Q Consensus 441 lKA~~k~ 447 (597)
|..|+..
T Consensus 34 l~~R~~~ 40 (140)
T PRK07353 34 VEEREDY 40 (140)
T ss_pred HHHHHHH
Confidence 3334444
No 183
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.81 E-value=2.1e+02 Score=31.01 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=7.9
Q ss_pred cCCCChHHHHHHHHHh
Q 007584 418 DVQMSPKKALRAAMLK 433 (597)
Q Consensus 418 ~~~~sp~K~~RAA~lk 433 (597)
|..|--+..+|--+|+
T Consensus 65 D~~vekEV~iRkrv~~ 80 (309)
T TIGR00570 65 DPTVEKEVDIRKRVLK 80 (309)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3444445555555443
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=32.63 E-value=18 Score=43.44 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=52.3
Q ss_pred CCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHH
Q 007584 128 NRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLY--------------S----------VSDE------FVADVRLTF 177 (597)
Q Consensus 128 ~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y--------------~----------S~~E------F~~DV~LIF 177 (597)
..+++-. ..|-|..+...|.+|+|++..|.+..| . ++.+ ...-+.+|-
T Consensus 87 v~~~d~~--~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~ 164 (1113)
T KOG0644|consen 87 VPMLDKP--IPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIG 164 (1113)
T ss_pred ccCcCCC--CCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccc
Confidence 3445533 678899999999999999999998777 2 3333 566778899
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHH
Q 007584 178 SNAMLYNPPENNVHKMAQELNNL 200 (597)
Q Consensus 178 ~NA~~YN~~~S~I~~~A~~Lek~ 200 (597)
.||..+|.|++ +++.++.+.++
T Consensus 165 ~at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 165 CATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred cceeeecCcHH-HHHHHHHHHHH
Confidence 99999999999 55555444443
No 185
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.55 E-value=78 Score=28.64 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
++||... .+|..-|+||.+|+.|+|+.+|+.+|.
T Consensus 26 s~~F~~l-p~k~~~pdYy~~I~~P~dL~tI~~kl~ 59 (106)
T cd05525 26 AIPFINL-PSKKKNPDYYERITDPVDLSTIEKQIL 59 (106)
T ss_pred cHhhccC-CCcccCCchhhhCCCCcCHHHHHHHHc
Confidence 4555444 335678999999999999999999886
No 186
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=32.40 E-value=4.5e+02 Score=25.42 Aligned_cols=7 Identities=14% Similarity=0.359 Sum_probs=2.6
Q ss_pred HHHHhhh
Q 007584 438 DTILKAQ 444 (597)
Q Consensus 438 dtIlKA~ 444 (597)
+.|..|.
T Consensus 57 ~~l~~A~ 63 (174)
T PRK07352 57 QALKEAE 63 (174)
T ss_pred HHHHHHH
Confidence 3333333
No 187
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=32.33 E-value=4e+02 Score=25.24 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=4.3
Q ss_pred HHhhhhhhh
Q 007584 440 ILKAQQRTL 448 (597)
Q Consensus 440 IlKA~~k~l 448 (597)
++..|+...
T Consensus 30 ~l~~R~~~I 38 (159)
T PRK09173 30 SLDARADRI 38 (159)
T ss_pred HHHHHHHHH
Confidence 344555553
No 188
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.90 E-value=2.8e+02 Score=31.31 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=5.8
Q ss_pred HHHHHHHHhh
Q 007584 526 EILKELEMLS 535 (597)
Q Consensus 526 ~~~~dle~l~ 535 (597)
+|+++|.-|.
T Consensus 149 ~~i~~l~~~~ 158 (445)
T PRK13428 149 RFLDELDAMA 158 (445)
T ss_pred HHHHHhhccC
Confidence 5666665554
No 189
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=31.75 E-value=1.1e+02 Score=35.05 Aligned_cols=10 Identities=40% Similarity=0.441 Sum_probs=4.7
Q ss_pred HHHHHHHHhh
Q 007584 526 EILKELEMLS 535 (597)
Q Consensus 526 ~~~~dle~l~ 535 (597)
.+-+|++.+.
T Consensus 332 ~iAkD~qk~~ 341 (489)
T PF05262_consen 332 EIAKDQQKLI 341 (489)
T ss_pred HHHHHHHHHH
Confidence 3334555544
No 190
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=31.22 E-value=6.1e+02 Score=26.25 Aligned_cols=8 Identities=38% Similarity=0.256 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 007584 424 KKALRAAM 431 (597)
Q Consensus 424 ~K~~RAA~ 431 (597)
+-+-||++
T Consensus 88 Dd~~rAqk 95 (250)
T KOG1150|consen 88 DDAERAQK 95 (250)
T ss_pred ccHHHHHH
Confidence 34455554
No 191
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=30.65 E-value=4.4e+02 Score=24.44 Aligned_cols=9 Identities=11% Similarity=0.505 Sum_probs=4.0
Q ss_pred HHhhhhhhh
Q 007584 440 ILKAQQRTL 448 (597)
Q Consensus 440 IlKA~~k~l 448 (597)
+|..|+...
T Consensus 23 ~l~~R~~~I 31 (147)
T TIGR01144 23 AIETRQKKI 31 (147)
T ss_pred HHHHHHHHH
Confidence 344444443
No 192
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=30.43 E-value=2.2e+02 Score=30.05 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 459 KLQQEKERLEQRQREEKARIEAQIKAAEA 487 (597)
Q Consensus 459 ~~~~e~~~~e~~~~ee~ar~~a~~~a~e~ 487 (597)
.++++.+.++..+++..+.++.+.+.-++
T Consensus 215 ~~e~e~~~l~e~~~~~~~~le~~~~~~ee 243 (297)
T PF02841_consen 215 AAEKEKEKLEEKQKEQEQMLEQQERSYEE 243 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 193
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.08 E-value=2.8e+02 Score=33.59 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=6.3
Q ss_pred CCChHHHHHHHHH
Q 007584 420 QMSPKKALRAAML 432 (597)
Q Consensus 420 ~~sp~K~~RAA~l 432 (597)
-++++=.-||--+
T Consensus 493 Glp~~ii~~A~~~ 505 (771)
T TIGR01069 493 GIPHFIIEQAKTF 505 (771)
T ss_pred CcCHHHHHHHHHH
Confidence 3555544555444
No 194
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=29.35 E-value=1.8e+02 Score=32.84 Aligned_cols=28 Identities=32% Similarity=0.235 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 475 KARIEAQIKAAEAASRMKAEIELKKQRE 502 (597)
Q Consensus 475 ~ar~~a~~~a~e~~~~~~~~~~~~~~r~ 502 (597)
.|+++-++.|.|.||.-++++.++.++|
T Consensus 401 Ea~ienkq~~~EkARedaa~EkA~dkeE 428 (672)
T KOG4722|consen 401 EACIENKQLADEKAREDAAEEKAADKEE 428 (672)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhHH
Confidence 4555555555555554444444444444
No 195
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=28.81 E-value=41 Score=30.68 Aligned_cols=26 Identities=0% Similarity=-0.040 Sum_probs=22.7
Q ss_pred CcccchhhhhhccccchhHHHhhhcc
Q 007584 252 KKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 252 K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+...|+||.+|+.|||+.+|+.+|..
T Consensus 35 ~~~~PdYy~iI~~Pmdl~tI~~kl~~ 60 (113)
T cd05524 35 RRNEPEYYEVVSNPIDLLKIQQKLKT 60 (113)
T ss_pred cccCCCHHHHhCCccCHHHHHHHhCc
Confidence 45678999999999999999998863
No 196
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=28.61 E-value=3e+02 Score=26.86 Aligned_cols=9 Identities=11% Similarity=0.549 Sum_probs=3.6
Q ss_pred HhhhhhHHH
Q 007584 432 LKSRFADTI 440 (597)
Q Consensus 432 lk~rfadtI 440 (597)
++.|+++-+
T Consensus 20 V~krVee~l 28 (149)
T PF15346_consen 20 VRKRVEEEL 28 (149)
T ss_pred HHHHHHHHH
Confidence 344444333
No 197
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=28.30 E-value=4.8e+02 Score=25.43 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=6.4
Q ss_pred HHHhhhhhhh
Q 007584 439 TILKAQQRTL 448 (597)
Q Consensus 439 tIlKA~~k~l 448 (597)
.+|..|+...
T Consensus 54 ~~L~~R~~~I 63 (184)
T PRK13455 54 GMLDKRAEGI 63 (184)
T ss_pred HHHHHHHHHH
Confidence 4566777665
No 198
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=27.87 E-value=43 Score=30.33 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
..+|... ..+..-|+||.+|+.|||+.+|+.+|..
T Consensus 25 ~~~F~~l-p~~~~~pdYy~iI~~PmdL~tI~~kl~~ 59 (106)
T cd05521 25 HPIFNVL-PLRKDYPDYYKIIKNPLSLNTVKKRLPH 59 (106)
T ss_pred hHhhhcC-CccccCccHHHHhcCCCCHHHHHHHHHc
Confidence 3444432 2455788999999999999999998874
No 199
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=27.71 E-value=40 Score=30.23 Aligned_cols=33 Identities=6% Similarity=-0.082 Sum_probs=25.6
Q ss_pred CCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 243 PPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 243 ~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.+|... ..+..-|+||.+|+.|||+.+|+.+|.
T Consensus 25 ~~F~~l-p~~~~~pdYy~vI~~PmdL~tI~~kl~ 57 (103)
T cd05517 25 ELFQKL-PSKVLYPDYYAVIKEPIDLKTIAQRIQ 57 (103)
T ss_pred HHHhcC-CCCCCCCCHHHHcCCCcCHHHHHHHHC
Confidence 444443 235567899999999999999999886
No 200
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.21 E-value=4.6e+02 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007584 496 ELKKQREKEREAARVALQKME 516 (597)
Q Consensus 496 ~~~~~r~~~~e~~r~~~~~~~ 516 (597)
..+.++..+-...+..+..|.
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~ 94 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELK 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334433334444444443
No 201
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=27.14 E-value=73 Score=39.10 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=0.0
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 460 LQQEKERL-EQRQREEKARIEAQIKAAEAASRMKAEIELKKQ 500 (597)
Q Consensus 460 ~~~e~~~~-e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~~ 500 (597)
||-|.|+. ..|||||+.|+|.|++|. .+..+||||
T Consensus 137 ~rteeeqqaAarEREe~er~e~ek~~i------l~~R~ARRK 172 (927)
T PF15402_consen 137 LRTEEEQQAAAREREERERAEREKEAI------LERREARRK 172 (927)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh
No 202
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=26.96 E-value=3.5e+02 Score=30.54 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=7.9
Q ss_pred hHHHHHHHH-HhhcCC
Q 007584 524 NLEILKELE-MLSGCC 538 (597)
Q Consensus 524 ~~~~~~dle-~l~~~~ 538 (597)
+..++.++- .|....
T Consensus 143 ~~~lId~~i~~l~~~~ 158 (445)
T PRK13428 143 QSATVDRFLDELDAMA 158 (445)
T ss_pred HHHHHHHHHHHhhccC
Confidence 445665554 455543
No 203
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.69 E-value=6.1e+02 Score=25.99 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=7.1
Q ss_pred CChhhhHHHHHHHHHH
Q 007584 455 ADPVKLQQEKERLEQR 470 (597)
Q Consensus 455 ~dp~~~~~e~~~~e~~ 470 (597)
+|-.-+..|+|.+|-+
T Consensus 95 g~~ie~~~e~eaaE~~ 110 (227)
T KOG4691|consen 95 GVLIERKAEKEAAEHR 110 (227)
T ss_pred hhHHHhhhhhHHHHHH
Confidence 3333344445555444
No 204
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=26.65 E-value=5.9e+02 Score=25.41 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=8.7
Q ss_pred hHHHHHHHHHhhc
Q 007584 524 NLEILKELEMLSG 536 (597)
Q Consensus 524 ~~~~~~dle~l~~ 536 (597)
-..|++.|++|..
T Consensus 228 ~~~~~~~l~~~~~ 240 (242)
T cd03405 228 FYAFYRSLEAYRN 240 (242)
T ss_pred HHHHHHHHHHHHh
Confidence 3467778887754
No 205
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=26.64 E-value=2.2e+02 Score=31.01 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhHHHHhhhhhhhccc
Q 007584 427 LRAAMLKSRFADTILKAQQRTLLDH 451 (597)
Q Consensus 427 ~RAA~lk~rfadtIlKA~~k~ll~~ 451 (597)
|+++.++. -+++-+++|.|+..
T Consensus 8 ~q~a~~~l---k~~~~~~qk~l~~~ 29 (332)
T TIGR01541 8 QQIADRKL---KKLNTADEKSLQSR 29 (332)
T ss_pred HHHHHHHH---hhhhHHHHHHHHHH
Confidence 55666553 56666677766443
No 206
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=26.43 E-value=1.5e+02 Score=27.53 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=15.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHH
Q 007584 452 GDKADPVKLQQEKERLEQRQRE 473 (597)
Q Consensus 452 g~k~dp~~~~~e~~~~e~~~~e 473 (597)
++..|++++++.+++.+.+..+
T Consensus 84 ~~~id~~~a~~~~~~ae~~l~~ 105 (130)
T TIGR01216 84 ADDIDEAEAEKALEAAEKLLES 105 (130)
T ss_pred cccCCHHHHHHHHHHHHHHHhh
Confidence 5667788777777776665543
No 207
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.24 E-value=2.2e+02 Score=32.12 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhH
Q 007584 197 LNNLFDIKWKSLE 209 (597)
Q Consensus 197 Lek~Fek~~k~i~ 209 (597)
++..|+..|..+-
T Consensus 142 ~~s~le~nFa~vG 154 (440)
T KOG2357|consen 142 LRSLLEENFALVG 154 (440)
T ss_pred HHHHHHHhhheeC
Confidence 3444444444443
No 208
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=25.89 E-value=6e+02 Score=24.38 Aligned_cols=9 Identities=33% Similarity=0.291 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 007584 525 LEILKELEM 533 (597)
Q Consensus 525 ~~~~~dle~ 533 (597)
..||+.|-.
T Consensus 96 ~~~L~~li~ 104 (198)
T PF01991_consen 96 KKFLKKLIE 104 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 355555433
No 209
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=25.48 E-value=4.8e+02 Score=26.49 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=7.2
Q ss_pred HHHHHHHHhhhhh
Q 007584 507 AARVALQKMERTV 519 (597)
Q Consensus 507 ~~r~~~~~~~~t~ 519 (597)
++|+++..+.+.|
T Consensus 76 ~~R~~~l~aKqev 88 (207)
T PRK01005 76 AGKRSLESLKQAV 88 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 4455666665554
No 210
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=25.11 E-value=84 Score=24.32 Aligned_cols=15 Identities=47% Similarity=0.645 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhh
Q 007584 503 KEREAARVALQKMER 517 (597)
Q Consensus 503 ~~~e~~r~~~~~~~~ 517 (597)
+.||+.|||+.++|+
T Consensus 24 lRre~erqA~~QLek 38 (42)
T PF12052_consen 24 LRREAERQALAQLEK 38 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777777776
No 211
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=25.10 E-value=7.4e+02 Score=25.21 Aligned_cols=10 Identities=20% Similarity=0.026 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 007584 526 EILKELEMLS 535 (597)
Q Consensus 526 ~~~~dle~l~ 535 (597)
.|..-||.|.
T Consensus 227 ~~~~~le~~~ 236 (261)
T TIGR01933 227 RERLYLETME 236 (261)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 212
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=24.92 E-value=3.2e+02 Score=26.31 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.9
Q ss_pred cCCCChh
Q 007584 557 AHFKNPL 563 (597)
Q Consensus 557 ~~~~~~l 563 (597)
+||.+|-
T Consensus 112 ~GF~DP~ 118 (151)
T PF11875_consen 112 PGFYDPC 118 (151)
T ss_pred CCCCCCc
Confidence 5556663
No 213
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=24.15 E-value=50 Score=29.65 Aligned_cols=32 Identities=16% Similarity=-0.030 Sum_probs=24.8
Q ss_pred CCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 244 PLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 244 P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+|...+. +...|+|+.+|+.|||+.+|+.+|.
T Consensus 26 ~F~~~p~-~~~~pdYy~iIk~Pmdl~tI~~kl~ 57 (103)
T cd05518 26 LFMEKPS-KKDYPDYYKIILEPIDLKTIEHNIR 57 (103)
T ss_pred HHhcCCC-cccCccHHHHcCCCcCHHHHHHHHC
Confidence 3443333 4557899999999999999999886
No 214
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=24.14 E-value=7.3e+02 Score=26.48 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=5.3
Q ss_pred HHHHHHHHhhc
Q 007584 526 EILKELEMLSG 536 (597)
Q Consensus 526 ~~~~dle~l~~ 536 (597)
.|..-||.|..
T Consensus 285 ~~~~~le~~~~ 295 (317)
T TIGR01932 285 SFWRSLEAYEK 295 (317)
T ss_pred HHHHHHHHHHH
Confidence 34445555544
No 215
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=23.99 E-value=7.9e+02 Score=25.17 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=2.9
Q ss_pred Hhhhhhh
Q 007584 441 LKAQQRT 447 (597)
Q Consensus 441 lKA~~k~ 447 (597)
+..|++.
T Consensus 34 l~~R~~~ 40 (246)
T TIGR03321 34 MDAREKK 40 (246)
T ss_pred HHHHHHH
Confidence 3344444
No 216
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.67 E-value=6.3e+02 Score=27.97 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 007584 468 EQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQKMERTVEIEHNLEILKE 530 (597)
Q Consensus 468 e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~~r~~~~e~~r~~~~~~~~t~~~~~~~~~~~d 530 (597)
.+|-+||-.|++|+.- .-+|+..+-.+-+++-+.++|+=.|+++.| +.|+++|++
T Consensus 220 R~r~eeeme~~~aeq~--slkRt~EeL~~G~~kL~~~~etLEqq~~~L------~~niDIL~~ 274 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQE--SLKRTEEELNIGKQKLVAMKETLEQQLQSL------QKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHH--HHHhhHHHHHhhHHHHHHHHHHHHHHHHHH------HhhhHHHHH
Confidence 3344444445555432 223333333444444444455544555444 445555543
No 217
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=22.59 E-value=6.3e+02 Score=29.86 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 007584 478 IEAQIKAAEAA 488 (597)
Q Consensus 478 ~~a~~~a~e~~ 488 (597)
+..+.+++++.
T Consensus 247 ~dee~k~i~~~ 257 (782)
T PF07218_consen 247 LDEEHKEIEEK 257 (782)
T ss_pred HhHHHHHHHHH
Confidence 44555555433
No 218
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=22.24 E-value=5.8e+02 Score=25.43 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhhh
Q 007584 507 AARVALQKMERTVE 520 (597)
Q Consensus 507 ~~r~~~~~~~~t~~ 520 (597)
++|+.+..+++.+.
T Consensus 71 ~~r~~ll~~k~~i~ 84 (198)
T PRK01558 71 AGRDLLISFEKSIK 84 (198)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 219
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=22.22 E-value=6.9e+02 Score=23.80 Aligned_cols=6 Identities=50% Similarity=0.750 Sum_probs=2.2
Q ss_pred HHHHHH
Q 007584 505 REAARV 510 (597)
Q Consensus 505 ~e~~r~ 510 (597)
.+.++.
T Consensus 106 ~~~a~~ 111 (164)
T PRK14473 106 KEEARA 111 (164)
T ss_pred HHHHHH
Confidence 333333
No 220
>PRK00106 hypothetical protein; Provisional
Probab=22.01 E-value=6.2e+02 Score=29.52 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHhhhhhhhcccCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Q 007584 439 TILKAQQRTLLDHGDKADPVKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARV-ALQKMER 517 (597)
Q Consensus 439 tIlKA~~k~ll~~g~k~dp~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~~r~~~~e~~r~-~~~~~~~ 517 (597)
|+|.|++.+ .++. +.++.+-.+-.+.|.++|+....+.....+++...+++.-..+-..++ .|++.|+
T Consensus 36 ~~~~A~~~A----------~~Il-eeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~ 104 (535)
T PRK00106 36 TLLNAEQEA----------VNLR-GKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIES 104 (535)
T ss_pred HHHHHHHHH----------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 007584 518 TVE 520 (597)
Q Consensus 518 t~~ 520 (597)
.++
T Consensus 105 rL~ 107 (535)
T PRK00106 105 RLT 107 (535)
T ss_pred HHH
No 221
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=21.94 E-value=7.5e+02 Score=24.13 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 007584 461 QQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQKMERTVEIEHNLEILKEL 531 (597)
Q Consensus 461 ~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~~r~~~~e~~r~~~~~~~~t~~~~~~~~~~~dl 531 (597)
+.|.++.-..-++++..+.++++..-........+.+++..+.+++++......--+.--+..--+++.++
T Consensus 16 ~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v 86 (198)
T PRK03963 16 EQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEV 86 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 222
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=21.90 E-value=3.8e+02 Score=31.09 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=10.9
Q ss_pred cCCCChHHHHHHHHH
Q 007584 418 DVQMSPKKALRAAML 432 (597)
Q Consensus 418 ~~~~sp~K~~RAA~l 432 (597)
.--+|-.|-.|-+++
T Consensus 466 py~ls~nkdVk~~F~ 480 (591)
T KOG2505|consen 466 PYSLSANKDVKSIFI 480 (591)
T ss_pred cccccccHHHHHHHH
Confidence 445666888888887
No 223
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.87 E-value=55 Score=29.09 Aligned_cols=36 Identities=8% Similarity=-0.102 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
-.++|...+. +...|+|+.+|+.|+|+.+|+.+|..
T Consensus 23 ~~~~F~~~p~-~~~~pdYy~iIk~Pmdl~~I~~kl~~ 58 (103)
T cd05519 23 LSELFLEKPS-KKLYPDYYVIIKRPIALDQIKRRIEG 58 (103)
T ss_pred hhHHhcCCCC-CCCCcCHHHHcCCCcCHHHHHHHHcc
Confidence 3455655533 44578999999999999999988863
No 224
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=3.7e+02 Score=27.52 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=4.2
Q ss_pred HHHHhhhhhh
Q 007584 511 ALQKMERTVE 520 (597)
Q Consensus 511 ~~~~~~~t~~ 520 (597)
-|+..++.-+
T Consensus 164 Vl~~ierskn 173 (227)
T KOG4691|consen 164 VLQLIERSKN 173 (227)
T ss_pred HHHHHHHHhh
Confidence 3444444433
No 225
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.63 E-value=2e+02 Score=29.25 Aligned_cols=13 Identities=54% Similarity=0.733 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHH
Q 007584 458 VKLQQEKERLEQR 470 (597)
Q Consensus 458 ~~~~~e~~~~e~~ 470 (597)
+|-|||||+||.|
T Consensus 129 ~~~~~~~~~~~~~ 141 (197)
T PRK12585 129 EKARQEREELEER 141 (197)
T ss_pred HHHHHhHHHHHHH
Confidence 4555556555543
No 226
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=21.58 E-value=1.1e+02 Score=26.36 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007584 152 GTVKTRLDRNLYSVSDEFVADVRLTFS 178 (597)
Q Consensus 152 ~TIkkKL~~~~Y~S~~EF~~DV~LIF~ 178 (597)
.-|+.+|.+|.|.|..+++.|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999998665553
No 227
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=21.36 E-value=6.8e+02 Score=23.40 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=5.4
Q ss_pred HHHhhhhhhh
Q 007584 439 TILKAQQRTL 448 (597)
Q Consensus 439 tIlKA~~k~l 448 (597)
.++..|+..+
T Consensus 31 ~~l~~R~~~I 40 (156)
T PRK05759 31 KALEERQKKI 40 (156)
T ss_pred HHHHHHHHHH
Confidence 4455566554
No 228
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.75 E-value=2e+02 Score=29.61 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.7
Q ss_pred CChhhh
Q 007584 455 ADPVKL 460 (597)
Q Consensus 455 ~dp~~~ 460 (597)
-||+..
T Consensus 150 dDp~lf 155 (250)
T KOG1150|consen 150 DDPELF 155 (250)
T ss_pred cCHHHH
Confidence 355443
No 229
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.74 E-value=7.3e+02 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=14.3
Q ss_pred hhhhhhhhH--HHHHHHHHhhcC
Q 007584 517 RTVEIEHNL--EILKELEMLSGC 537 (597)
Q Consensus 517 ~t~~~~~~~--~~~~dle~l~~~ 537 (597)
..++-|.-. ++.++|+|+.|.
T Consensus 483 QL~Esn~ele~DLreEld~~~g~ 505 (1243)
T KOG0971|consen 483 QLQESNRELELDLREELDMAKGA 505 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444433 788999999885
No 230
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=20.65 E-value=5.1e+02 Score=23.03 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007584 472 REEKARIEAQIKAAEAASRMKA 493 (597)
Q Consensus 472 ~ee~ar~~a~~~a~e~~~~~~~ 493 (597)
+||+-||-.+.+.|.+..|..+
T Consensus 37 kEekrrLkeEkKkAKAeqrA~E 58 (86)
T PF15437_consen 37 KEEKRRLKEEKKKAKAEQRARE 58 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777665554433
No 231
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.63 E-value=1.3e+03 Score=27.43 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhhhhhH--HHHHH
Q 007584 458 VKLQQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIELK-----KQREKEREAARVALQKMERTVEIEHNL--EILKE 530 (597)
Q Consensus 458 ~~~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~-----~~r~~~~e~~r~~~~~~~~t~~~~~~~--~~~~d 530 (597)
..++.+.++++..-.+|..++.+..++.-++.+.+++.-.+ +++-..-=...+++..+++.+++++.. .++.-
T Consensus 319 ~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTN 398 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776777777655443332222222211111 111111114466788888989988877 55655
Q ss_pred HHHhh
Q 007584 531 LEMLS 535 (597)
Q Consensus 531 le~l~ 535 (597)
++.+.
T Consensus 399 ~~e~~ 403 (754)
T TIGR01005 399 YRQAA 403 (754)
T ss_pred HHHHH
Confidence 55543
No 232
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=4.7e+02 Score=28.23 Aligned_cols=73 Identities=25% Similarity=0.234 Sum_probs=38.9
Q ss_pred HhhhhhhhcccCCCCChhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 441 LKAQQRTLLDHGDKADPVKLQQEKERL---EQRQREEKARIEAQIKAAEAASRMKAEIELKKQREKEREAARVALQK 514 (597)
Q Consensus 441 lKA~~k~ll~~g~k~dp~~~~~e~~~~---e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~~~~r~~~~e~~r~~~~~ 514 (597)
+|-|+|.. ..--|+.|+-=-+++..+ -+.+.+-||.++|++.|--.|-++.+.+.++...+.+..+-|-++-.
T Consensus 235 fkEqeK~~-k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~~kka~k~~Kk~ikna~kd 310 (379)
T COG5269 235 FKEQEKEM-KKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKD 310 (379)
T ss_pred HHHHHHHH-HHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 44566653 445566664333333332 23333445666677666666666666666665555555555555443
No 233
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=20.41 E-value=7.3e+02 Score=27.31 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007584 482 IKAAEAASRMKAEIELKKQREKE 504 (597)
Q Consensus 482 ~~a~e~~~~~~~~~~~~~~r~~~ 504 (597)
++++++|.+.+++++++++.+..
T Consensus 154 aka~aEA~k~Ka~aeAkkkAe~a 176 (387)
T COG3064 154 AKAAAEAAKLKAAAEAKKKAEEA 176 (387)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444444455555554433
No 234
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.22 E-value=6.2e+02 Score=24.11 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=6.6
Q ss_pred cCCCChHHHHHHH
Q 007584 418 DVQMSPKKALRAA 430 (597)
Q Consensus 418 ~~~~sp~K~~RAA 430 (597)
...+.|..+-|.|
T Consensus 62 ~~~~NPKR~qR~a 74 (132)
T PF11208_consen 62 EKKINPKRLQREA 74 (132)
T ss_pred ccCCChhHHHHHH
Confidence 4455555555544
Done!