Query 007584
Match_columns 597
No_of_seqs 326 out of 1451
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 6.8E-28 2.3E-32 216.5 14.7 111 98-210 5-115 (117)
2 2oss_A HUNK1 protein, bromodom 99.9 1.1E-27 3.8E-32 218.7 13.8 112 98-209 13-124 (127)
3 4alg_A Bromodomain-containing 99.9 6.6E-28 2.2E-32 227.1 12.3 116 97-212 23-138 (154)
4 2ouo_A HUNK1 protein, bromodom 99.9 7.8E-28 2.7E-32 220.6 10.5 106 105-210 21-129 (130)
5 3uv5_A Transcription initiatio 99.9 2E-27 7E-32 241.0 13.7 168 106-276 14-188 (265)
6 3d7c_A General control of amin 99.9 8.1E-27 2.8E-31 208.2 12.8 103 105-209 6-108 (112)
7 2d9e_A Peregrin; four-helix bu 99.9 1.7E-26 5.9E-31 209.2 14.6 107 106-214 7-113 (121)
8 3p1f_A CREB-binding protein; s 99.9 1.1E-26 3.6E-31 209.4 13.0 108 105-212 10-118 (119)
9 3fkm_X Signaling protein; brom 99.9 1.1E-26 3.7E-31 221.3 13.3 109 101-209 16-124 (166)
10 3mb4_A Protein polybromo-1; PB 99.9 8.4E-27 2.9E-31 211.7 11.9 113 96-210 5-123 (124)
11 3q2e_A Bromodomain and WD repe 99.9 1.4E-26 4.9E-31 209.9 12.9 107 105-213 9-116 (123)
12 3jvl_A Bromodomain-containing 99.9 4.1E-27 1.4E-31 212.3 8.5 108 103-210 6-116 (120)
13 1e6i_A Transcriptional activat 99.9 1.7E-26 5.8E-31 209.1 12.5 103 108-213 15-117 (121)
14 3mb3_A PH-interacting protein; 99.9 2.4E-26 8.2E-31 211.4 13.0 108 105-214 20-128 (135)
15 2yyn_A Transcription intermedi 99.9 2.2E-26 7.5E-31 212.2 12.6 109 102-213 16-126 (135)
16 2dat_A Possible global transcr 99.9 3.7E-26 1.3E-30 207.3 13.2 104 104-209 11-120 (123)
17 3nxb_A CAT eye syndrome critic 99.9 3.1E-26 1.1E-30 205.5 12.2 100 106-207 16-115 (116)
18 3rcw_A Bromodomain-containing 99.9 6.2E-26 2.1E-30 208.7 13.6 106 106-213 13-118 (135)
19 2grc_A Probable global transcr 99.9 7.8E-26 2.7E-30 206.9 13.9 107 103-211 8-121 (129)
20 3iu5_A Protein polybromo-1; PB 99.9 3.6E-26 1.2E-30 205.2 11.4 106 103-210 2-113 (116)
21 2i7k_A Bromodomain-containing 99.9 6.6E-26 2.3E-30 204.5 13.0 102 106-209 8-109 (117)
22 3ljw_A Protein polybromo-1; al 99.9 1.9E-25 6.6E-30 201.7 13.2 105 105-211 7-117 (120)
23 3hme_A Bromodomain-containing 99.9 1.9E-25 6.6E-30 202.7 12.7 102 106-209 13-114 (123)
24 3aad_A Transcription initiatio 99.9 4.6E-26 1.6E-30 234.3 9.5 167 107-276 48-221 (292)
25 3mqm_A Probable histone-lysine 99.9 2E-25 6.8E-30 203.1 12.4 106 106-213 9-120 (126)
26 3k2j_A Protein polybromo-1; PB 99.9 3.5E-25 1.2E-29 203.1 13.6 105 105-211 16-126 (130)
27 2ri7_A Nucleosome-remodeling f 99.9 3.7E-25 1.3E-29 210.5 11.5 105 102-208 68-172 (174)
28 3uv4_A Second bromodomain of h 99.9 8.2E-25 2.8E-29 207.0 12.8 104 108-213 27-135 (158)
29 3o36_A Transcription intermedi 99.9 3.9E-24 1.4E-28 205.7 13.5 105 101-208 76-182 (184)
30 3tlp_A Protein polybromo-1; PB 99.9 1.7E-24 5.7E-29 202.5 9.6 105 107-213 25-136 (150)
31 3dai_A ATPase family AAA domai 99.9 7.7E-24 2.6E-28 193.8 12.5 105 106-212 10-119 (130)
32 2ro1_A Transcription intermedi 99.9 1.4E-23 4.9E-28 203.5 10.2 104 101-211 71-179 (189)
33 3u5n_A E3 ubiquitin-protein li 99.9 3.4E-23 1.2E-27 202.9 13.0 110 99-211 74-203 (207)
34 2dkw_A Hypothetical protein KI 99.9 1.4E-22 4.8E-27 186.2 11.2 97 103-206 9-109 (131)
35 3uv5_A Transcription initiatio 99.9 2.3E-22 7.8E-27 204.0 13.5 103 109-213 139-242 (265)
36 3aad_A Transcription initiatio 99.9 8.5E-23 2.9E-27 210.0 7.4 95 117-213 181-275 (292)
37 2r10_A Chromatin structure-rem 99.9 2.7E-22 9.2E-27 211.9 9.4 163 108-276 80-264 (361)
38 2r0y_A Chromatin structure-rem 99.9 2E-22 6.8E-27 209.1 7.1 165 106-276 28-214 (311)
39 2r0y_A Chromatin structure-rem 99.8 6.2E-21 2.1E-25 198.0 10.8 91 120-212 177-268 (311)
40 2r10_A Chromatin structure-rem 99.8 8.3E-21 2.8E-25 200.5 10.5 86 121-208 228-313 (361)
41 3iu6_A Protein polybromo-1; PB 99.7 3.9E-17 1.3E-21 152.6 13.7 101 105-211 6-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.4 1.2E-13 4.2E-18 133.5 7.3 98 103-213 72-169 (183)
43 3fkm_X Signaling protein; brom 80.4 0.86 2.9E-05 42.8 2.8 37 240-276 37-74 (166)
44 3uv4_A Second bromodomain of h 78.0 1.1 3.9E-05 41.8 2.8 38 238-276 44-81 (158)
45 2d9e_A Peregrin; four-helix bu 76.4 1.7 5.7E-05 38.7 3.3 35 242-277 25-59 (121)
46 3p1f_A CREB-binding protein; s 74.1 1 3.4E-05 39.7 1.2 38 239-276 27-65 (119)
47 4alg_A Bromodomain-containing 73.7 1.6 5.4E-05 40.5 2.5 38 240-277 48-86 (154)
48 3mqm_A Probable histone-lysine 73.6 4 0.00014 36.2 5.1 36 240-276 31-66 (126)
49 2oss_A HUNK1 protein, bromodom 73.6 1.8 6.1E-05 38.8 2.8 37 240-276 37-74 (127)
50 3hme_A Bromodomain-containing 72.9 2.6 8.7E-05 37.5 3.6 35 241-276 30-64 (123)
51 3g0l_A Hwalp4, bromodomain adj 71.7 2.1 7E-05 37.6 2.7 37 240-277 29-65 (117)
52 3nxb_A CAT eye syndrome critic 71.3 2 6.7E-05 37.7 2.4 35 241-276 33-67 (116)
53 3rcw_A Bromodomain-containing 70.2 2.9 9.9E-05 37.6 3.3 36 241-277 30-65 (135)
54 1e6i_A Transcriptional activat 69.5 2.2 7.7E-05 37.8 2.4 36 240-276 29-64 (121)
55 3dai_A ATPase family AAA domai 68.2 1.9 6.5E-05 38.7 1.7 34 242-276 28-61 (130)
56 2ouo_A HUNK1 protein, bromodom 67.6 2.3 8E-05 38.2 2.2 35 242-276 43-78 (130)
57 3d7c_A General control of amin 66.8 2.3 7.7E-05 37.1 1.8 34 242-276 25-58 (112)
58 2i7k_A Bromodomain-containing 66.2 2.9 0.0001 37.0 2.5 35 242-277 26-60 (117)
59 3q2e_A Bromodomain and WD repe 64.5 2.5 8.6E-05 37.5 1.7 35 242-277 28-62 (123)
60 2ri7_A Nucleosome-remodeling f 62.6 3.9 0.00013 38.0 2.7 35 242-277 90-124 (174)
61 3jvl_A Bromodomain-containing 61.3 2.1 7.1E-05 37.7 0.5 36 242-277 30-66 (120)
62 3mb3_A PH-interacting protein; 60.5 3.4 0.00012 37.1 1.8 35 242-277 39-73 (135)
63 2dat_A Possible global transcr 60.0 3.6 0.00012 36.5 1.9 36 241-277 36-71 (123)
64 3k2j_A Protein polybromo-1; PB 59.6 3.9 0.00013 36.8 2.1 36 240-276 39-74 (130)
65 2zuo_A MVP, major vault protei 59.5 29 0.00099 40.3 9.5 43 507-550 776-818 (861)
66 3ljw_A Protein polybromo-1; al 59.0 13 0.00043 32.7 5.3 34 242-276 32-65 (120)
67 2b5u_A Colicin E3; high resolu 57.3 25 0.00085 38.6 8.0 22 452-473 288-309 (551)
68 2yyn_A Transcription intermedi 57.3 4 0.00014 36.8 1.7 34 242-277 38-71 (135)
69 3iu5_A Protein polybromo-1; PB 55.6 4.2 0.00014 35.6 1.5 35 242-277 29-63 (116)
70 3etw_A Adhesin A; antiparallel 54.7 1.2E+02 0.0041 27.2 11.0 38 460-497 11-48 (119)
71 2grc_A Probable global transcr 54.2 4.9 0.00017 36.0 1.7 36 241-277 35-70 (129)
72 3u5n_A E3 ubiquitin-protein li 53.2 6 0.00021 38.0 2.3 34 242-277 99-132 (207)
73 3mb4_A Protein polybromo-1; PB 51.1 5.8 0.0002 35.1 1.7 34 242-276 39-72 (124)
74 1f5n_A Interferon-induced guan 50.6 33 0.0011 38.3 8.1 23 459-481 498-520 (592)
75 2i1j_A Moesin; FERM, coiled-co 46.8 13 0.00045 41.3 4.1 12 154-165 106-117 (575)
76 1ij5_A Plasmodial specific LAV 46.2 20 0.00069 36.3 5.1 30 462-491 48-77 (323)
77 2dkw_A Hypothetical protein KI 44.9 6.5 0.00022 35.5 1.0 22 255-276 37-58 (131)
78 3oja_A Leucine-rich immune mol 42.5 1.1E+02 0.0036 32.4 10.2 39 497-535 422-462 (487)
79 1f5n_A Interferon-induced guan 41.9 49 0.0017 37.0 7.7 9 437-445 472-480 (592)
80 3tlp_A Protein polybromo-1; PB 40.7 11 0.00036 34.5 1.8 34 242-276 49-82 (150)
81 3o36_A Transcription intermedi 36.2 8.9 0.0003 36.0 0.5 23 255-277 110-132 (184)
82 2i1j_A Moesin; FERM, coiled-co 30.6 35 0.0012 37.9 4.2 18 453-470 326-343 (575)
83 1ij5_A Plasmodial specific LAV 25.7 1.1E+02 0.0038 30.7 6.6 22 474-495 38-59 (323)
84 2ro1_A Transcription intermedi 22.4 12 0.0004 35.7 -1.4 32 242-278 94-127 (189)
85 3err_A Fusion protein of micro 22.2 1.4E+02 0.0047 33.0 6.9 18 456-473 3-20 (536)
86 3v6i_A V-type ATP synthase sub 20.0 5.1E+02 0.017 23.8 11.2 10 524-533 99-108 (187)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=6.8e-28 Score=216.54 Aligned_cols=111 Identities=29% Similarity=0.569 Sum_probs=103.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007584 98 DKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (597)
Q Consensus 98 ~kr~km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF 177 (597)
+++.+.+...+..|..||..|+.|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++++|..||+|||
T Consensus 5 ~k~~~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (117)
T 3g0l_A 5 KKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF 82 (117)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3344556678899999999999999999999999987 69999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 007584 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (597)
Q Consensus 178 ~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~ 210 (597)
.||++||+++|.++.+|..|+++|++.|+++..
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 83 DNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998753
No 2
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=1.1e-27 Score=218.69 Aligned_cols=112 Identities=38% Similarity=0.697 Sum_probs=104.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007584 98 DKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (597)
Q Consensus 98 ~kr~km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF 177 (597)
.+..+++..+...|..||..|+.|+.+|+|..||++.+..+||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 13 ~~~~r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 92 (127)
T 2oss_A 13 NKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMF 92 (127)
T ss_dssp TSCCCCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455677778888999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 178 ~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
.||++||+++|.+|.+|..|++.|++.|++++
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 93 TNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999998775
No 3
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=6.6e-28 Score=227.12 Aligned_cols=116 Identities=36% Similarity=0.643 Sum_probs=106.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007584 97 KDKRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLT 176 (597)
Q Consensus 97 k~kr~km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LI 176 (597)
..++.+++..+...|..||+.|+.++.+|+|..||++.++++||||++|++||||+||++||.++.|.++.+|..||+||
T Consensus 23 p~~~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li 102 (154)
T 4alg_A 23 PKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTM 102 (154)
T ss_dssp ---CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34455677888888999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhh
Q 007584 177 FSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (597)
Q Consensus 177 F~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~ 212 (597)
|.||++||++++.|+.+|..|+++|++.|.+++...
T Consensus 103 f~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 138 (154)
T 4alg_A 103 FTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEE 138 (154)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchh
Confidence 999999999999999999999999999999887543
No 4
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=7.8e-28 Score=220.55 Aligned_cols=106 Identities=39% Similarity=0.732 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcCCC---CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 007584 105 RGVTHQCSVILKSLMMHPA---GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~---s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~ 181 (597)
...++.|..||..|+.++. +|+|+.||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+
T Consensus 21 ~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 100 (130)
T 2ouo_A 21 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCY 100 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4567899999999999875 8999999999877899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 007584 182 LYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (597)
Q Consensus 182 ~YN~~~S~I~~~A~~Lek~Fek~~k~i~~ 210 (597)
+||+++|.||.+|..|++.|++.|.+|+.
T Consensus 101 ~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 101 KYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999998763
No 5
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=2e-27 Score=240.97 Aligned_cols=168 Identities=21% Similarity=0.340 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
.+...|..||..|+.++.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCC
Confidence 66789999999999999999999999987 6999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHhhhccCCcCC------ccccccCcccccc-cccCCCCCCCCCCCCCCCCcccchh
Q 007584 186 PENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAG------LGKILSGKMMEVN-DTRQNCPKTPPLHSTLSSKKSKMSE 258 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~------~~~~~s~~~~ei~-~~~~~~~k~~P~~~~v~~K~~~~~~ 258 (597)
++|.|+.+|..|.+.|++.|+++..++......+. ....++.....+. ......+..+||..+|.++ ..|+|
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ek~i~p~~dd~~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~-~~pdY 170 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK-FVPDY 170 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSTTTTCHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT-TSTTH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChh-HhCcH
Confidence 99999999999999999999998766542111000 0001111111211 1235567789999999866 48899
Q ss_pred hhhhccccchhHHHhhhc
Q 007584 259 EKAARSSYCARAVEVERA 276 (597)
Q Consensus 259 ~k~l~~~~d~~~~~~~ls 276 (597)
+.+|+.|||+.+|+.+|.
T Consensus 171 ~~iIk~Pmdl~tI~~kl~ 188 (265)
T 3uv5_A 171 YKVIVNPMDLETIRKNIS 188 (265)
T ss_dssp HHHCSSCCCHHHHHHHHH
T ss_pred HHHhCCcccHHHHHHHHh
Confidence 999999999999998886
No 6
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=8.1e-27 Score=208.19 Aligned_cols=103 Identities=31% Similarity=0.573 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
..+...|..||..|+.|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 6 ~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 467799999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 185 PPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 185 ~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
+++|.++.+|..|++.|++.|+++.
T Consensus 84 ~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999998764
No 7
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=209.19 Aligned_cols=107 Identities=27% Similarity=0.378 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
.+...|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||+
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999986 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 007584 186 PENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~~k~i~~k~~~ 214 (597)
++|.+|.+|..|++.|+..|.++...+..
T Consensus 85 ~~s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 85 KDTIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877653
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.94 E-value=1.1e-26 Score=209.37 Aligned_cols=108 Identities=35% Similarity=0.605 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 007584 105 RGVTHQCSVILKSLMM-HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLY 183 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~-~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~Y 183 (597)
.++...|..+|..|+. ++.+|||..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988 689999999999876679999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHHhh
Q 007584 184 NPPENNVHKMAQELNNLFDIKWKSLEEKW 212 (597)
Q Consensus 184 N~~~S~I~~~A~~Lek~Fek~~k~i~~k~ 212 (597)
|+++|.+|.+|..|++.|++.|..+...+
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987654
No 9
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1.1e-26 Score=221.30 Aligned_cols=109 Identities=28% Similarity=0.494 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007584 101 PKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNA 180 (597)
Q Consensus 101 ~km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA 180 (597)
..+...+...|..||..|+.++.+++|..||++.+..+||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999988789999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 181 MLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 181 ~~YN~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
++||+++|.|+.+|..|+++|++.|.++.
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999875
No 10
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=8.4e-27 Score=211.72 Aligned_cols=113 Identities=26% Similarity=0.393 Sum_probs=101.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc------CCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHH
Q 007584 96 PKDKRPKMDRGVTHQCSVILKSLMM------HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEF 169 (597)
Q Consensus 96 ~k~kr~km~~~~~k~c~~IL~~L~~------~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF 169 (597)
...++.++...+...|..||+.|+. |+.+++|..||+.. .+||||++|++||||+||++||.++.|.++.+|
T Consensus 5 ~~~k~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f 82 (124)
T 3mb4_A 5 ISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSM 82 (124)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHH
T ss_pred cCCCccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 3445556677888999999999998 55679999999966 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 007584 170 VADVRLTFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (597)
Q Consensus 170 ~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~ 210 (597)
..||+|||.||++||+++|.+|.+|..|+++|++.|+++..
T Consensus 83 ~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 83 VEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998753
No 11
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=209.94 Aligned_cols=107 Identities=36% Similarity=0.608 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
..+.++|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 185 PP-ENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 185 ~~-~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
++ +|.||.+|..|+++|++.|+++...|.
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 899999999999999999999998875
No 12
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.94 E-value=4.1e-27 Score=212.31 Aligned_cols=108 Identities=38% Similarity=0.704 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCC---CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007584 103 MDRGVTHQCSVILKSLMMHPA---GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (597)
Q Consensus 103 m~~~~~k~c~~IL~~L~~~~~---s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~N 179 (597)
....++++|..||..|+.++. +|||..||++....+||||++|++||||+||++||.+|.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999987 99999999988666999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 007584 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (597)
Q Consensus 180 A~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~ 210 (597)
|++||+++|.++.+|..|++.|++.|.+++.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999998764
No 13
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=1.7e-26 Score=209.14 Aligned_cols=103 Identities=35% Similarity=0.664 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 108 THQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 108 ~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
+..|..||..|+.|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 688999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 188 NNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 188 S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
|.+|.+|..|++.|++.|+.++ .|.
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p-~~~ 117 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIP-EYS 117 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSG-GGG
T ss_pred CHHHHHHHHHHHHHHHHHHHcc-ccc
Confidence 9999999999999999999885 453
No 14
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.93 E-value=2.4e-26 Score=211.41 Aligned_cols=108 Identities=31% Similarity=0.549 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 007584 105 RGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN 184 (597)
..+.+.|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999975 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 007584 185 PP-ENNVHKMAQELNNLFDIKWKSLEEKWSS 214 (597)
Q Consensus 185 ~~-~S~I~~~A~~Lek~Fek~~k~i~~k~~~ 214 (597)
++ +|.||.+|..|+++|++.|..+...|..
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 128 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYKS 128 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 8999999999999999999999888763
No 15
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=212.17 Aligned_cols=109 Identities=36% Similarity=0.616 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHH
Q 007584 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR--NLYSVSDEFVADVRLTFSN 179 (597)
Q Consensus 102 km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~--~~Y~S~~EF~~DV~LIF~N 179 (597)
.|++.+++.|..||..|+.|+.+|+|..||+. .+||||++|++||||+||++||.+ +.|.++.+|.+||+|||.|
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~N 92 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 92 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999986 599999999999999999999998 5999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 180 A~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
|++||+++|.||.+|..|+++|++.|+++...+.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 93 CAEFNEPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999876543
No 16
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=207.31 Aligned_cols=104 Identities=22% Similarity=0.352 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHHHHcCC------CCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007584 104 DRGVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTF 177 (597)
Q Consensus 104 ~~~~~k~c~~IL~~L~~~~------~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF 177 (597)
.+.+.+.|..||+.|+.++ .+|+|..||+.. .+||||++|++||||+||++||.++.|.++.+|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4678899999999999986 589999999965 79999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 178 SNAMLYNPPENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 178 ~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
.||++||+++|.+|.+|..|+++|++.+++++
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998765
No 17
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.93 E-value=3.1e-26 Score=205.45 Aligned_cols=100 Identities=29% Similarity=0.539 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
.+...|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35789999999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 007584 186 PENNVHKMAQELNNLFDIKWKS 207 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~~k~ 207 (597)
++|.++.+|..|++.|++.|.+
T Consensus 94 ~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864
No 18
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.93 E-value=6.2e-26 Score=208.68 Aligned_cols=106 Identities=25% Similarity=0.410 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
.+...|..||..|+.|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 13 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90 (135)
T ss_dssp HHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 36789999999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 186 PENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
++|.+|.+|..|++.|...|+.+...+.
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~~~~~~~ 118 (135)
T 3rcw_A 91 RDTVFYRAAVRLRDQGGVVLRQARREVD 118 (135)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877654
No 19
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=7.8e-26 Score=206.90 Aligned_cols=107 Identities=21% Similarity=0.353 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHHHcCC-------CCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007584 103 MDRGVTHQCSVILKSLMMHP-------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRL 175 (597)
Q Consensus 103 m~~~~~k~c~~IL~~L~~~~-------~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~L 175 (597)
-.+.+...|..||+.|+.++ .+++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+|
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35678899999999999885 489999999965 899999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 007584 176 TFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 176 IF~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k 211 (597)
||.||++||+++|.+|.+|..|+++|++.|++++..
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999865
No 20
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=3.6e-26 Score=205.17 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHHHcCC------CCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007584 103 MDRGVTHQCSVILKSLMMHP------AGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLT 176 (597)
Q Consensus 103 m~~~~~k~c~~IL~~L~~~~------~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LI 176 (597)
|+...+..|..|++.|+.+. .+++|..||+.. .+||||++|++||||+||++||.++.|.++.+|..||+||
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 79 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRR--NQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLL 79 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGG--GCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcc--cCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 56677899999999999884 499999999955 7999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 007584 177 FSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEE 210 (597)
Q Consensus 177 F~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~ 210 (597)
|.||++||+++|.+|.+|..|+++|++.++++..
T Consensus 80 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 80 FNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999875
No 21
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=6.6e-26 Score=204.47 Aligned_cols=102 Identities=26% Similarity=0.364 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
.+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus 8 ~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999975 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 186 PENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
++|.++.+|..|++.|++.|....
T Consensus 86 ~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 86 PETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988653
No 22
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=1.9e-25 Score=201.69 Aligned_cols=105 Identities=26% Similarity=0.464 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007584 105 RGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~ 178 (597)
..+...|..|+..|..+.. +++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 4667899999999998876 99999999865 899999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 007584 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 179 NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k 211 (597)
||++||+++|.+|.+|..|+++|++.|++|+..
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999865
No 23
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=202.73 Aligned_cols=102 Identities=29% Similarity=0.374 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
.+...|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999977 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhH
Q 007584 186 PENNVHKMAQELNNLFDIKWKSLE 209 (597)
Q Consensus 186 ~~S~I~~~A~~Lek~Fek~~k~i~ 209 (597)
++|.+|.+|..|++.|.+.|.+..
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 91 PDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
No 24
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.92 E-value=4.6e-26 Score=234.29 Aligned_cols=167 Identities=22% Similarity=0.340 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 007584 107 VTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPP 186 (597)
Q Consensus 107 ~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~ 186 (597)
+...|..||+.|+.++.+|+|+.||++. .+||||++|++||||+||++||+++.|.++.+|..||+|||.||++||++
T Consensus 48 l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 48 LSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999987 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHhhhccCCcCCcc------ccccCcccccc-cccCCCCCCCCCCCCCCCCcccchhh
Q 007584 187 ENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAGLG------KILSGKMMEVN-DTRQNCPKTPPLHSTLSSKKSKMSEE 259 (597)
Q Consensus 187 ~S~I~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~~~------~~~s~~~~ei~-~~~~~~~k~~P~~~~v~~K~~~~~~~ 259 (597)
+|.++.+|..|.++|++.|+.+...+.......... ..++.....+. ..-...+..+||..+|.++ ..|+|+
T Consensus 126 ~s~i~~~A~~L~~~~~~~~~~~~~~~~~~e~~i~Pl~dd~~~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~-~~pdY~ 204 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK-FVPDYY 204 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTGGGSHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTT-TSTTHH
T ss_pred chHHHHHHHHHHHHHHhhhhcchhhhhhhhhccccccccchhHHHHHHHHHHhhhhhhcCcchhHHHhccccc-ccccHH
Confidence 999999999999999999988765543211000000 00111111111 1124567789999999854 689999
Q ss_pred hhhccccchhHHHhhhc
Q 007584 260 KAARSSYCARAVEVERA 276 (597)
Q Consensus 260 k~l~~~~d~~~~~~~ls 276 (597)
.+|+.|||+.+|+.+|.
T Consensus 205 ~iIk~PmdL~tI~~kl~ 221 (292)
T 3aad_A 205 KVIVNPMDLETIRKNIS 221 (292)
T ss_dssp HHCSSCCCHHHHHHHHH
T ss_pred HHcCCcCCHHHHHHHHh
Confidence 99999999999999886
No 25
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=203.07 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007584 106 GVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~N 179 (597)
.+...|..|++.|+.+.+ +|||..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.|
T Consensus 9 ~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 86 (126)
T 3mqm_A 9 RLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRN 86 (126)
T ss_dssp HHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999998754 99999999976 7999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 180 A~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
|++||+++|.+|.+|..|++.|++.|.++..++.
T Consensus 87 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 87 AEKYYGRKSPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887764
No 26
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=203.13 Aligned_cols=105 Identities=24% Similarity=0.386 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007584 105 RGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~ 178 (597)
..+..+|..|++.|..+.. ++||..||+.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4567899999999998744 99999999965 899999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 007584 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 179 NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k 211 (597)
||++||+++|.++.+|..|++.|++.|+++...
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999765
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=3.7e-25 Score=210.53 Aligned_cols=105 Identities=36% Similarity=0.641 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 007584 102 KMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAM 181 (597)
Q Consensus 102 km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~ 181 (597)
.|+...+..|..||..|+.++.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||+
T Consensus 68 ~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 145 (174)
T 2ri7_A 68 PLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCR 145 (174)
T ss_dssp BCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 578888999999999999999999999999986 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 007584 182 LYNPPENNVHKMAQELNNLFDIKWKSL 208 (597)
Q Consensus 182 ~YN~~~S~I~~~A~~Lek~Fek~~k~i 208 (597)
+||+++|.+|.+|..|+++|++.|+.+
T Consensus 146 ~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 146 YYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998765
No 28
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=8.2e-25 Score=206.96 Aligned_cols=104 Identities=33% Similarity=0.627 Sum_probs=95.5
Q ss_pred HHHHHHHHHH-----HHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 007584 108 THQCSVILKS-----LMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (597)
Q Consensus 108 ~k~c~~IL~~-----L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~ 182 (597)
...|..||.. |+.++.+|||..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556665555 45579999999999976 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 183 YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
||+++|.||.+|..|.+.|...|.++...|.
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~ 135 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHLT 135 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987775
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=3.9e-24 Score=205.69 Aligned_cols=105 Identities=37% Similarity=0.652 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 007584 101 PKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR--NLYSVSDEFVADVRLTFS 178 (597)
Q Consensus 101 ~km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~--~~Y~S~~EF~~DV~LIF~ 178 (597)
..|.+.++++|..||..|+.++.+++|..||+. .+|+||++|++||||+||++||.+ +.|.++.+|.+||+|||.
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~ 152 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQ 152 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 358899999999999999999999999999985 489999999999999999999998 789999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 007584 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSL 208 (597)
Q Consensus 179 NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i 208 (597)
||++||+++|.|+.+|..|+++|++.|+++
T Consensus 153 Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 153 NCAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876
No 30
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=202.46 Aligned_cols=105 Identities=25% Similarity=0.383 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCC-------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007584 107 VTHQCSVILKSLMMHPA-------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSN 179 (597)
Q Consensus 107 ~~k~c~~IL~~L~~~~~-------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~N 179 (597)
...+|..|+..|+.+.. +++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK--DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchh--hCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35788888888887654 89999999865 8999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 180 AMLYNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 180 A~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
|++||+++|.||.+|..|+++|++.|+++...+.
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd 136 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPD 136 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999875543
No 31
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.90 E-value=7.7e-24 Score=193.81 Aligned_cols=105 Identities=30% Similarity=0.501 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 007584 106 GVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNP 185 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~ 185 (597)
.+...|..++..|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHHHH-HhHHhh
Q 007584 186 PENNV----HKMAQELNNLFDIKWK-SLEEKW 212 (597)
Q Consensus 186 ~~S~I----~~~A~~Lek~Fek~~k-~i~~k~ 212 (597)
++|++ +.+|..|++.+...++ .+...+
T Consensus 88 ~~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~ 119 (130)
T 3dai_A 88 DRDPGDRLIRHRACALRDTAYAIIKEELDEDF 119 (130)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99876 7888889888888885 444443
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=203.54 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHH
Q 007584 101 PKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIIS--KPMDLGTVKTRLDRN---LYSVSDEFVADVRL 175 (597)
Q Consensus 101 ~km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk--~PMDL~TIkkKL~~~---~Y~S~~EF~~DV~L 175 (597)
..|++..+++|..||..|+.|+.+|||++||+ |+||.||+ +||||+||++||.++ .|.++++|++||+|
T Consensus 71 ~~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~L 144 (189)
T 2ro1_A 71 AKLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGR 144 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHH
Confidence 46889999999999999999999999999998 67999998 899999999999999 99999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 007584 176 TFSNAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 176 IF~NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k 211 (597)
||.||++|| +++.++.+|..|+++|++.|+++...
T Consensus 145 if~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 145 MFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp HHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999 58889999999999999999998754
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=3.4e-23 Score=202.85 Aligned_cols=110 Identities=33% Similarity=0.580 Sum_probs=103.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHH
Q 007584 99 KRPKMDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDR---NLYSVSDEFVADVRL 175 (597)
Q Consensus 99 kr~km~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~---~~Y~S~~EF~~DV~L 175 (597)
....|++.+++.|..||..|+.|+.+++|+.||+. .+|+||+||++||||+||++||.+ +.|.++.+|..||+|
T Consensus 74 ~~~~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~l 150 (207)
T 3u5n_A 74 TAQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRL 150 (207)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHH
Confidence 34568999999999999999999999999999985 599999999999999999999997 799999999999999
Q ss_pred HHHHHhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHHhHHh
Q 007584 176 TFSNAMLYNP-----------------PENNVHKMAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 176 IF~NA~~YN~-----------------~~S~I~~~A~~Lek~Fek~~k~i~~k 211 (597)
||.||++||+ +++.++.+|..|+.+|+..|+++...
T Consensus 151 i~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 151 IFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 99999999999999999999988643
No 34
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=186.22 Aligned_cols=97 Identities=29% Similarity=0.465 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 007584 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (597)
Q Consensus 103 m~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~ 182 (597)
....+...|..||..|+.++.+++|..| +||||+||++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~ 81 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALE 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999997 799999999999999999999999999999999999999999999
Q ss_pred hCCCCCH----HHHHHHHHHHHHHHHHH
Q 007584 183 YNPPENN----VHKMAQELNNLFDIKWK 206 (597)
Q Consensus 183 YN~~~S~----I~~~A~~Lek~Fek~~k 206 (597)
||+++|+ |+.+|..|++.|...+.
T Consensus 82 yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 82 YNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 57899999999988874
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=2.3e-22 Score=203.97 Aligned_cols=103 Identities=31% Similarity=0.608 Sum_probs=94.3
Q ss_pred HHHHHHHHH-HHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 007584 109 HQCSVILKS-LMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPE 187 (597)
Q Consensus 109 k~c~~IL~~-L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~ 187 (597)
..|..++.. |+.++.+|||+.||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++
T Consensus 139 ~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 139 FILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp HHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344454443 77889999999999977 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 188 NNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 188 S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
|.||.+|..|++.|...|+.+...+.
T Consensus 217 s~~~~~A~~l~~~~~~~~~~~~~~~~ 242 (265)
T 3uv5_A 217 SQYTKTAQEIVNVCYQTLTEYDEHLT 242 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987764
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=8.5e-23 Score=210.00 Aligned_cols=95 Identities=33% Similarity=0.656 Sum_probs=90.5
Q ss_pred HHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 007584 117 SLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQE 196 (597)
Q Consensus 117 ~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~ 196 (597)
.|+.++.+|+|+.||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++|.+|.+|..
T Consensus 181 ~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~ 258 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQE 258 (292)
T ss_dssp TGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred hhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 478899999999999976 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhhh
Q 007584 197 LNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 197 Lek~Fek~~k~i~~k~~ 213 (597)
|++.|+..|..+...+.
T Consensus 259 L~~~~~~~~~~~~~~l~ 275 (292)
T 3aad_A 259 IVNVCYQTLTEYDEHLT 275 (292)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887664
No 37
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.86 E-value=2.7e-22 Score=211.87 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhhC
Q 007584 108 THQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYS-VSDEFVADVRLTFSNAMLYN 184 (597)
Q Consensus 108 ~k~c~~IL~~L~~~--~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~-S~~EF~~DV~LIF~NA~~YN 184 (597)
...|..+|+.+... ..+++|+.||+.. .+||||+||++||||+||++|| +.|. ++.+|..||+|||.||++||
T Consensus 80 ~~~~~~~l~~l~~~~~~~~~~F~~p~~~~--~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN 155 (361)
T 2r10_A 80 NRFISFTLDVLIDKYKDIFKDFIKLPSRK--FHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 155 (361)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHcCCcccHHhcCCCCcc--cCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcC
Confidence 46788888888664 4579999999965 8999999999999999999999 5555 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhHHhhhccCCcC-----C----ccccccCcccc----c------ccccCCCCCCCCC
Q 007584 185 PPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKA-----G----LGKILSGKMME----V------NDTRQNCPKTPPL 245 (597)
Q Consensus 185 ~~~S~I~~~A~~Lek~Fek~~k~i~~k~~~~~~~~-----~----~~~~~s~~~~e----i------~~~~~~~~k~~P~ 245 (597)
+++|.||.+|..|+++|+..|.+... ........ . ....+...... + ......-+-.+||
T Consensus 156 ~~~s~i~~~a~~l~~~~~~~~~k~k~-~~~~~~i~~~~k~~l~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F 234 (361)
T 2r10_A 156 EYDSLIVKNSMQVVMLIEFEVLKAKN-LKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPF 234 (361)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHT-TTTCCBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccc-cCCcCcCCHHHHHHHHHHHHHhhccchHHHHHHHhccccccccccCCcchhcc
Confidence 99999999999999999998876521 00000000 0 00000000000 0 0011234568899
Q ss_pred CCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 246 HSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 246 ~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
..+|.+. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 235 ~~pvd~~-~~PdY~~iIk~PmDL~tI~~kl~ 264 (361)
T 2r10_A 235 MELVDKD-ELPEYYEIVHSPMALSIVKQNLE 264 (361)
T ss_dssp SSCCCTT-TCTHHHHHCSSCCCHHHHHHHHH
T ss_pred cCCCChh-hcccHHHHhcCcccHHHHHHHHh
Confidence 9999876 57999999999999999998885
No 38
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.86 E-value=2e-22 Score=209.11 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhh
Q 007584 106 GVTHQCSVILKSLMMH--PAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYS-VSDEFVADVRLTFSNAML 182 (597)
Q Consensus 106 ~~~k~c~~IL~~L~~~--~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~-S~~EF~~DV~LIF~NA~~ 182 (597)
.+...|..+|..+... ..+++|+.||+.. .+||||+||++||||+||++|| +.|. ++.+|..||+|||.||++
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~--~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~ 103 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRK--FHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 103 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHH
Confidence 4456666667666653 4589999999855 8999999999999999999999 5555 899999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHHhhhccCCcCC-----c----cccccCcccc----c------ccccCCCCCCC
Q 007584 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWSSEVPKAG-----L----GKILSGKMME----V------NDTRQNCPKTP 243 (597)
Q Consensus 183 YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~~~~~~~~~-----~----~~~~s~~~~e----i------~~~~~~~~k~~ 243 (597)
||+++|.||.+|..|+++|.+.|.+... ......... . ...+...... + .......+-.+
T Consensus 104 yN~~~s~i~~~A~~l~~~~~~~~~k~k~-~~~~~~i~~~~k~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~~~s~ 182 (311)
T 2r0y_A 104 YNEYDSLIVKNSMQVVMLIEFEVLKAKN-LKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSE 182 (311)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHT-GGGCCBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSSCTTG
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhccc-CCCCCCCChHHHHHHHHHHHHHHhhhHHHHHHHHhccccccccccCCccHH
Confidence 9999999999999999999999887521 110000000 0 0000000000 0 00112345688
Q ss_pred CCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 244 PLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 244 P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 183 ~F~~pvd~~-~~PdY~~iIk~PMDL~tI~~kl~ 214 (311)
T 2r0y_A 183 PFMELVDKD-ELPEYYEIVHSPMALSIVKQNLE 214 (311)
T ss_dssp GGSSCCCTT-TCHHHHHHCSSCCCHHHHHHHHH
T ss_pred HHhCCCChh-hcccHHHHhCCccCHHHHHHHHH
Confidence 999999865 57999999999999999998885
No 39
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.83 E-value=6.2e-21 Score=197.96 Aligned_cols=91 Identities=30% Similarity=0.442 Sum_probs=85.2
Q ss_pred cCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 007584 120 MHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNN 199 (597)
Q Consensus 120 ~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek 199 (597)
.|+.+|+|+.||++. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367899999999976 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-HHhh
Q 007584 200 LFDIKWKSL-EEKW 212 (597)
Q Consensus 200 ~Fek~~k~i-~~k~ 212 (597)
+|+..|++. ...|
T Consensus 255 ~f~~~~~~~~~p~~ 268 (311)
T 2r0y_A 255 YFNYLIQKEFFPEL 268 (311)
T ss_dssp HHHHHHHHTHHHHH
T ss_pred HHHHHHHHhcCCcc
Confidence 999999983 3444
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.83 E-value=8.3e-21 Score=200.52 Aligned_cols=86 Identities=31% Similarity=0.488 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 007584 121 HPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAMLYNPPENNVHKMAQELNNL 200 (597)
Q Consensus 121 ~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~YN~~~S~I~~~A~~Lek~ 200 (597)
|+.+|+|+.||++. .+||||+||++||||+||++||.++.|.++.+|..||+|||.||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999976 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 007584 201 FDIKWKSL 208 (597)
Q Consensus 201 Fek~~k~i 208 (597)
|+..|.++
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999973
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=152.55 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007584 105 RGVTHQCSVILKSLMMHPA------GWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFS 178 (597)
Q Consensus 105 ~~~~k~c~~IL~~L~~~~~------s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~ 178 (597)
..+...+..|++.|+.+.+ +.+|... |.+. |+||. ++||+|.+|++||.+|.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~L--Psk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEI--PAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTC--CSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHC--CCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999844 7899984 4443 89998 999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhHHh
Q 007584 179 NAMLYNPPENNVHKMAQELNNLFDIKWKSLEEK 211 (597)
Q Consensus 179 NA~~YN~~~S~I~~~A~~Lek~Fek~~k~i~~k 211 (597)
||++||.++|+||.+|..|+++|.+.+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998765
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.43 E-value=1.2e-13 Score=133.51 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcCCCcchhhcCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 007584 103 MDRGVTHQCSVILKSLMMHPAGWVFNRPVDPVKLDIPDYFSIISKPMDLGTVKTRLDRNLYSVSDEFVADVRLTFSNAML 182 (597)
Q Consensus 103 m~~~~~k~c~~IL~~L~~~~~s~pF~~PVdp~k~~vPDYy~IIk~PMDL~TIkkKL~~~~Y~S~~EF~~DV~LIF~NA~~ 182 (597)
+...+...+..||..|..++.++||+.. .++.||||.||++||+.|.|.++.+|..||.|||.||..
T Consensus 72 ~~~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~ 138 (183)
T 3lqh_A 72 LEKELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAIN 138 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Confidence 3445567789999999999999999862 259999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhHHhhh
Q 007584 183 YNPPENNVHKMAQELNNLFDIKWKSLEEKWS 213 (597)
Q Consensus 183 YN~~~S~I~~~A~~Lek~Fek~~k~i~~k~~ 213 (597)
||.+++.+..++..|+.+|.+.++++..-+.
T Consensus 139 ~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 139 SDGGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred ccCCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999876544
No 43
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=80.38 E-value=0.86 Score=42.83 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCc-ccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+..+||..+|.+.. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 37 ~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~ 74 (166)
T 3fkm_X 37 EGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLK 74 (166)
T ss_dssp TTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHH
T ss_pred CCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHc
Confidence 34568888888754 68999999999999999998886
No 44
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=78.04 E-value=1.1 Score=41.76 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 238 NCPKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 238 ~~~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
..+..+||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 44 ~~~~s~~F~~PVd~~-~~PdY~~iIk~PMDL~tI~~kl~ 81 (158)
T 3uv4_A 44 AVPDSWPFHHPVNKK-FVPDYYKVIVNPMDLETIRKNIS 81 (158)
T ss_dssp TSTTCGGGTSCCCTT-TSTTHHHHCSSCCCHHHHHHHHH
T ss_pred cCCCchhhcCcCChh-hcccHHHHcCCccCHHHHHHHHH
Confidence 355678888888865 57899999999999999998886
No 45
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.36 E-value=1.7 Score=38.68 Aligned_cols=35 Identities=0% Similarity=-0.166 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.+||..+|.++ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 25 ~~~F~~pv~~~-~~pdY~~iIk~PmdL~tI~~kl~~ 59 (121)
T 2d9e_A 25 GNIFSEPVPLS-EVPDYLDHIKKPMDFFTMKQNLEA 59 (121)
T ss_dssp SCSSSSCCCTT-TCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cHhhCCcCCcc-ccCCHHHHcCCCcCHHHHHHHHhc
Confidence 57788888765 578999999999999999998863
No 46
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=74.12 E-value=1 Score=39.75 Aligned_cols=38 Identities=5% Similarity=0.071 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCCc-ccchhhhhhccccchhHHHhhhc
Q 007584 239 CPKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 239 ~~k~~P~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.+.++||..+|.+.. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 27 ~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~ 65 (119)
T 3p1f_A 27 DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLD 65 (119)
T ss_dssp TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHH
T ss_pred CCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHh
Confidence 356788999998764 57999999999999999998886
No 47
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=73.75 E-value=1.6 Score=40.53 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCc-ccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+..+||..+|.+.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 48 ~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~ 86 (154)
T 4alg_A 48 QFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLEN 86 (154)
T ss_dssp TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhc
Confidence 45788999998865 689999999999999999988863
No 48
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=73.64 E-value=4 Score=36.23 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+-.+||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 31 ~~s~~F~~pv~~~-~~pdY~~iIk~PmdL~tI~~kl~ 66 (126)
T 3mqm_A 31 ALAAPLLNLPPKK-KNADYYEKISDPLDLITIEKQIL 66 (126)
T ss_dssp BTTGGGSSCCCGG-GCTTHHHHCSSCCCHHHHHHHHH
T ss_pred ChhHHhcCCCCcc-cCCCHHHHcCCCCCHHHHHHHHH
Confidence 3457887777644 67899999999999999998885
No 49
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=73.58 E-value=1.8 Score=38.82 Aligned_cols=37 Identities=8% Similarity=0.018 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCC-CcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSS-KKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~-K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+..+||..+|.+ +...|+|+.+|+.|||+.+|+.+|.
T Consensus 37 ~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~ 74 (127)
T 2oss_A 37 QFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLE 74 (127)
T ss_dssp TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHH
T ss_pred ccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHH
Confidence 346788888887 4578999999999999999999886
No 50
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=72.87 E-value=2.6 Score=37.52 Aligned_cols=35 Identities=0% Similarity=-0.173 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
..+||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 30 ~~~~F~~pv~~~-~~pdY~~iIk~PmdL~tI~~kl~ 64 (123)
T 3hme_A 30 PHGFFAFPVTDA-IAPGYSMIIKHPMDFGTMKDKIV 64 (123)
T ss_dssp TTCSSSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHH
T ss_pred ccHhhcCCCChh-hccCHHHHCCCCCCHHHHHHHhc
Confidence 356787777755 67899999999999999998886
No 51
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=71.70 E-value=2.1 Score=37.60 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
+..+||..+|.++. .|+|+.+|+.|||+.+|+.+|..
T Consensus 29 ~~s~~F~~pv~~~~-~pdY~~~I~~Pmdl~tI~~kl~~ 65 (117)
T 3g0l_A 29 EDAWPFLLPVNLKL-VPGYKKVIKKPMDFSTIREKLSS 65 (117)
T ss_dssp TTCGGGSSCCCTTT-STTHHHHCSSCCCHHHHHHHHHT
T ss_pred CCchhhcCcCChhh-cCChHHHcCCCCCHHHHHHHHhC
Confidence 34678888887654 78999999999999999998863
No 52
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=71.29 E-value=2 Score=37.67 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.++||..+|.+. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 33 ~s~~F~~pv~~~-~~pdY~~~I~~Pmdl~tI~~kl~ 67 (116)
T 3nxb_A 33 DSWPFLEPVDES-YAPNYYQIIKAPMDISSMEKKLN 67 (116)
T ss_dssp TCGGGSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHH
T ss_pred CcHhhcCcCChh-hccChHHHcCCCCCHHHHHHHHc
Confidence 356777777765 57899999999999999998885
No 53
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=70.16 E-value=2.9 Score=37.62 Aligned_cols=36 Identities=6% Similarity=-0.105 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
..+||..+|.++ ..|+|+.+|+.|||+.+|+.+|..
T Consensus 30 ~~~~F~~pv~~~-~~pdY~~iI~~PmdL~tI~~kl~~ 65 (135)
T 3rcw_A 30 PARIFAQPVSLK-EVPDYLDHIKHPMDFATMRKRLEA 65 (135)
T ss_dssp TTCSSSSCCCTT-TCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cchhhcCCCChh-hcCCHHHHhCCCCCHHHHHHHHhc
Confidence 467888888765 678999999999999999988863
No 54
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=69.51 E-value=2.2 Score=37.78 Aligned_cols=36 Identities=6% Similarity=0.026 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+..+||..+|.+. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 29 ~~a~~F~~pvd~~-~~pdY~~iIk~PmdL~tI~~kl~ 64 (121)
T 1e6i_A 29 AAAWPFLQPVNKE-EVPDYYDFIKEPMDLSTMEIKLE 64 (121)
T ss_dssp TTCGGGSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHH
T ss_pred CCchhhCCCCChh-hCcCHHHHcCCCCCHHHHHHHHh
Confidence 3567788887754 57899999999999999998886
No 55
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=68.20 E-value=1.9 Score=38.67 Aligned_cols=34 Identities=3% Similarity=-0.101 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.+||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 28 ~~~F~~pv~~~-~~pdY~~iI~~PmdL~tI~~kl~ 61 (130)
T 3dai_A 28 FRVFTKPVDPD-EVPDYVTVIKQPMDLSSVISKID 61 (130)
T ss_dssp GGGGSSCCCTT-TCTTHHHHCSSCCCHHHHHHHHH
T ss_pred cHhhcCCCChh-hcCCHHHHcCCCCCHHHHHHHHh
Confidence 56777777665 47899999999999999999886
No 56
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=67.57 E-value=2.3 Score=38.18 Aligned_cols=35 Identities=3% Similarity=-0.021 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCc-ccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKK-SKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~-~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.+||..+|.+.. ..|+|+.+|+.|||+.+|+.+|.
T Consensus 43 a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~ 78 (130)
T 2ouo_A 43 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLE 78 (130)
T ss_dssp HGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHH
T ss_pred HHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHH
Confidence 467888887654 58999999999999999999886
No 57
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=66.79 E-value=2.3 Score=37.09 Aligned_cols=34 Identities=6% Similarity=-0.027 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.+||..+|.++ ..|+|+.+|+.|||+.+|+.+|.
T Consensus 25 ~~~F~~pvd~~-~~pdY~~iIk~PmdL~tI~~kl~ 58 (112)
T 3d7c_A 25 AWPFMEPVKKS-EAPDYYEVIRFPIDLKTMTERLR 58 (112)
T ss_dssp GGGGSSCCCTT-TSTTHHHHCSSCCCHHHHHHHHH
T ss_pred chhhcCCCCcc-cccCHHHHccCCcCHHHHHHHHc
Confidence 45677777654 57899999999999999999886
No 58
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=66.16 E-value=2.9 Score=36.96 Aligned_cols=35 Identities=0% Similarity=-0.134 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.++|..+|.+ ...|+|+.+|+.|||+.+|+.+|..
T Consensus 26 ~~~F~~PVd~-~~~pdY~~iIk~PMDL~tI~~kl~~ 60 (117)
T 2i7k_A 26 SAFFSFPVTD-FIAPGYSMIIKHPMDFSTMKEKIKN 60 (117)
T ss_dssp GGTSSSCCCT-TTSSSHHHHCSCCCCHHHHHHHHTT
T ss_pred cHHhcCCCCc-cccCCHHHHhCCCCCHHHHHHHHHc
Confidence 3466666664 4578999999999999999998863
No 59
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=64.50 E-value=2.5 Score=37.47 Aligned_cols=35 Identities=6% Similarity=-0.024 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.+||..+|.+. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 28 s~~F~~pv~~~-~~pdY~~~I~~PmdL~tI~~kl~~ 62 (123)
T 3q2e_A 28 SEPFRQPVDLV-EYPDYRDIIDTPMDFGTVRETLDA 62 (123)
T ss_dssp GGGGSSCCCTT-TCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cHhhcCCCChh-hcCCHHHHcCCCCCHHHHHHHHhc
Confidence 46777777655 578999999999999999998863
No 60
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.56 E-value=3.9 Score=38.03 Aligned_cols=35 Identities=6% Similarity=0.012 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.+||..+|.+. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 90 ~~~F~~pv~~~-~~pdY~~~I~~PmdL~tI~~kl~~ 124 (174)
T 2ri7_A 90 AWPFLEPVDPN-DAPDYYGVIKEPMDLATMEERVQR 124 (174)
T ss_dssp GTTTSSCCCTT-TCHHHHHHCSSCCCHHHHHHHHHT
T ss_pred hhhhhcCCCcc-cCCchHHHhCCcCCHHHHHHHHHc
Confidence 45777777765 578999999999999999998863
No 61
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=61.29 E-value=2.1 Score=37.74 Aligned_cols=36 Identities=3% Similarity=-0.043 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCcc-cchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKS-KMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~-~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.+||..+|.+... .|+|+.+|+.|||+.+|+.+|..
T Consensus 30 a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~ 66 (120)
T 3jvl_A 30 AWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLES 66 (120)
T ss_dssp HGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred cchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHcc
Confidence 5678888876553 68999999999999999998863
No 62
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=60.54 E-value=3.4 Score=37.15 Aligned_cols=35 Identities=6% Similarity=-0.021 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
++||..+|.+ ...|+|+.+|+.|||+.+|+.+|..
T Consensus 39 s~~F~~pv~~-~~~pdY~~iI~~Pmdl~tI~~kl~~ 73 (135)
T 3mb3_A 39 SEPFRQPVDL-LEYPDYRDIIDTPMDFATVRETLEA 73 (135)
T ss_dssp GGGGSSCCCT-TTSTTHHHHCSSCCCHHHHHHHHHT
T ss_pred ChhhcCCCCh-hhCCCHHHHhCCCcCHHHHHHHHhC
Confidence 4677777775 4578999999999999999998863
No 63
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.95 E-value=3.6 Score=36.51 Aligned_cols=36 Identities=8% Similarity=-0.091 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
-.+||..+|.. ...|+|+.+|+.|||+.+|+.+|..
T Consensus 36 ~s~~F~~pv~~-~~~pdY~~iIk~PmdL~tI~~kl~~ 71 (123)
T 2dat_A 36 LSEVFIQLPSR-KELPEYYELIRKPVDFKKIKERIRN 71 (123)
T ss_dssp SGGGGTSCCCT-TTSCHHHHHCSSCCCHHHHHHHHTT
T ss_pred eeHHhcCCCCc-ccCCCHHHHcCCCCCHHHHHHHHhC
Confidence 45677777653 4678999999999999999998863
No 64
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=59.64 E-value=3.9 Score=36.79 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 240 PKTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 240 ~k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
+-++||..+|. +...|+|+.+|+.|||+.+|+.+|.
T Consensus 39 ~~s~~F~~pv~-~~~~PdY~~iIk~PMdL~tI~~kL~ 74 (130)
T 3k2j_A 39 LIAEPFYHLPS-KKKYPDYYQQIKMPISLQQIRTKLK 74 (130)
T ss_dssp BTTGGGSSCCC-TTTCHHHHHHCSSCCCHHHHHHHHH
T ss_pred CccHhhcCCCC-hhhCccHHHHcCCCCCHHHHHHHHh
Confidence 34567777765 4578899999999999999999886
No 65
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=59.45 E-value=29 Score=40.35 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHhhcCCCCccccCCchHH
Q 007584 507 AARVALQKMERTVEIEHNLEILKELEMLSGCCLSPHLLNGSEAQ 550 (597)
Q Consensus 507 ~~r~~~~~~~~t~~~~~~~~~~~dle~l~~~~~~~~~~~~~~~~ 550 (597)
.+..++++.+...+|+ +..|-+=.+-|+.-++..-+..+|+..
T Consensus 776 ~~ele~~k~~~la~ie-~~kf~~~v~aig~~ti~~ia~Agpe~q 818 (861)
T 2zuo_A 776 QLELEVSKAQQLANVE-AKKFKEMTEALGPGTIRDLAVAGPEMQ 818 (861)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHSCTTHHHHTGGGCC---
T ss_pred HHHhhHHHHHHHHHHH-HHHHHHHHHhhChHHHHHHHhcChHHH
Confidence 4445556666667776 555555455555433322236677654
No 66
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=58.98 E-value=13 Score=32.72 Aligned_cols=34 Identities=6% Similarity=-0.078 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
++||..++. +...|+|+.+|+.|||+.+|+.+|.
T Consensus 32 s~~F~~~~~-~~~~pdY~~iIk~PmdL~tI~~kl~ 65 (120)
T 3ljw_A 32 SELFQKLPS-KVQYPDYYAIIKEPIDLKTIAQRIQ 65 (120)
T ss_dssp TGGGSSCCC-TTTCHHHHHHCSSCCCHHHHHHHHH
T ss_pred cHHhcCCCC-cccCCChHHHcCCCCCHHHHHHHHc
Confidence 456665544 4567899999999999999998885
No 67
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=57.35 E-value=25 Score=38.62 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=14.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHH
Q 007584 452 GDKADPVKLQQEKERLEQRQRE 473 (597)
Q Consensus 452 g~k~dp~~~~~e~~~~e~~~~e 473 (597)
-+--++..|+|..||--|||+|
T Consensus 288 s~ilt~~elkqrqeee~r~~qe 309 (551)
T 2b5u_A 288 SDVLSPDQVKQRQDEENRRQQE 309 (551)
T ss_dssp EECCCHHHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHHHHHHH
Confidence 3455677776666666666666
No 68
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=57.26 E-value=4 Score=36.84 Aligned_cols=34 Identities=3% Similarity=-0.006 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.+||..+|.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 38 s~~F~~Pv~~--~~pdY~~iIk~PmDL~tI~~kL~~ 71 (135)
T 2yyn_A 38 SLAFQDPVPL--TVPDYYKIIKNPMDLSTIKKRLQE 71 (135)
T ss_dssp GGGGSSCCCT--TSTTHHHHCSSCCCHHHHHHHHHS
T ss_pred chhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHhc
Confidence 3556555553 589999999999999999999974
No 69
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=55.62 E-value=4.2 Score=35.56 Aligned_cols=35 Identities=0% Similarity=-0.090 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
++||..++. +...|+|+.+|+.|||+.+|+.+|..
T Consensus 29 s~~F~~p~~-~~~~pdY~~iI~~PmdL~tI~~kl~~ 63 (116)
T 3iu5_A 29 CELFIRAPK-RRNQPDYYEVVSQPIDLMKIQQKLKM 63 (116)
T ss_dssp GGGGSSCCC-GGGCHHHHHHCSSCCCHHHHHHHHHT
T ss_pred eHHhcCCCC-cccCCCHHHHhCCCCCHHHHHHHHHc
Confidence 456666655 45678999999999999999988863
No 70
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=54.70 E-value=1.2e+02 Score=27.19 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 460 LQQEKERLEQRQREEKARIEAQIKAAEAASRMKAEIEL 497 (597)
Q Consensus 460 ~~~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~~~~~~~ 497 (597)
|.+=-.++++.+++|.+|...+.+-||+|++.-+.-.+
T Consensus 11 l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~ 48 (119)
T 3etw_A 11 LQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQ 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445678888999999999999999998877654433
No 71
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=54.22 E-value=4.9 Score=35.97 Aligned_cols=36 Identities=8% Similarity=-0.064 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 241 KTPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 241 k~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
-.+||..+|. +...|+|+.+|+.|||+.+|+.+|..
T Consensus 35 ~s~~F~~pv~-~~~~pdY~~iIk~PmdL~tI~~kl~~ 70 (129)
T 2grc_A 35 LSEVFIQLPS-RKELPEYYELIRKPVDFKKIKERIRN 70 (129)
T ss_dssp GGGGGSSCCC-TTTCHHHHHHCSSCCCHHHHHHHHHT
T ss_pred eeHHhcCCCC-cccCCCHHHHcCCCCCHHHHHHHHhc
Confidence 3566666665 45679999999999999999998863
No 72
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=53.22 E-value=6 Score=38.01 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhcc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
++||..+|.. ..|+|+.+|+.|||+.+|+.+|..
T Consensus 99 s~~F~~Pv~~--~~pdY~~iIk~PmdL~tI~~kl~~ 132 (207)
T 3u5n_A 99 SIEFQEPVPA--SIPNYYKIIKKPMDLSTVKKKLQK 132 (207)
T ss_dssp CGGGSSCCCT--TSTTHHHHCSSCCCHHHHHHHHST
T ss_pred hhhhhccCCh--hhccHhHHhCCccCHHHHHHHHhc
Confidence 4566666653 578999999999999999999974
No 73
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=51.10 E-value=5.8 Score=35.10 Aligned_cols=34 Identities=3% Similarity=-0.137 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
++||..+|.. ...|+|+.+|+.|||+.+|+.+|.
T Consensus 39 s~~F~~pv~~-~~~pdY~~iI~~PmdL~tI~~kl~ 72 (124)
T 3mb4_A 39 SAIFLRLPSR-SELPDYYLTIKKPMDMEKIRSHMM 72 (124)
T ss_dssp GGGGSCCCCT-TTCHHHHHHCSSCCCHHHHHHHHH
T ss_pred cHHhhcCCCc-cccCCHHHHcCCCCCHHHHHHHHH
Confidence 4566666553 457899999999999999998885
No 74
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=50.59 E-value=33 Score=38.32 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 007584 459 KLQQEKERLEQRQREEKARIEAQ 481 (597)
Q Consensus 459 ~~~~e~~~~e~~~~ee~ar~~a~ 481 (597)
-+++|.+.|+.+|++....++++
T Consensus 498 ~~~~~~~~l~~~~~~~~~~~~~~ 520 (592)
T 1f5n_A 498 SAQASAKMLHEMQRKNEQMMEQK 520 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 75
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=46.77 E-value=13 Score=41.32 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=5.8
Q ss_pred HHHHHhcCCCCC
Q 007584 154 VKTRLDRNLYSV 165 (597)
Q Consensus 154 IkkKL~~~~Y~S 165 (597)
++..|-.|.|..
T Consensus 106 vk~dIl~G~l~c 117 (575)
T 2i1j_A 106 VKNAILSDEIYC 117 (575)
T ss_dssp HHHHHHTTSSCC
T ss_pred HHHHHhCCCCCC
Confidence 444555555543
No 76
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=46.21 E-value=20 Score=36.29 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007584 462 QEKERLEQRQREEKARIEAQIKAAEAASRM 491 (597)
Q Consensus 462 ~e~~~~e~~~~ee~ar~~a~~~a~e~~~~~ 491 (597)
++++|.++.+.++-.|++.+..|.|.++|.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 77 (323)
T 1ij5_A 48 QKEQEQKAKLAEYDQKVQNEFDARERAERE 77 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChhhhhHHHHHH
Confidence 333333333444444444444444433333
No 77
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.91 E-value=6.5 Score=35.45 Aligned_cols=22 Identities=5% Similarity=-0.138 Sum_probs=20.5
Q ss_pred cchhhhhhccccchhHHHhhhc
Q 007584 255 KMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 255 ~~~~~k~l~~~~d~~~~~~~ls 276 (597)
.|+|+.+|+.|||+.+|+.+|.
T Consensus 37 ~pdY~~iIk~PmDL~tI~~kl~ 58 (131)
T 2dkw_A 37 VSDYLEVIKEPMDLSTVITKID 58 (131)
T ss_dssp CSSCTTSCSSCCCHHHHHHHHH
T ss_pred CccHHhHcCCCcCHHHHHHHHc
Confidence 6899999999999999999886
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.53 E-value=1.1e+02 Score=32.43 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh--hhhhHHHHHHHHHhh
Q 007584 497 LKKQREKEREAARVALQKMERTVE--IEHNLEILKELEMLS 535 (597)
Q Consensus 497 ~~~~r~~~~e~~r~~~~~~~~t~~--~~~~~~~~~dle~l~ 535 (597)
+..+.+.||+.+++....|...++ -++|...-++++.+-
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 444455555554444433332221 123444445555443
No 79
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=41.93 E-value=49 Score=36.96 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=4.6
Q ss_pred hHHHHhhhh
Q 007584 437 ADTILKAQQ 445 (597)
Q Consensus 437 adtIlKA~~ 445 (597)
++|||.|-+
T Consensus 472 ~~~ilq~d~ 480 (592)
T 1f5n_A 472 TDAILQTDQ 480 (592)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHHHH
Confidence 455655544
No 80
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=40.66 E-value=11 Score=34.48 Aligned_cols=34 Identities=15% Similarity=-0.060 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCcccchhhhhhccccchhHHHhhhc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAARSSYCARAVEVERA 276 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~~~~d~~~~~~~ls 276 (597)
..||..++. +...|+|+.+|+.|||+.+|+.+|.
T Consensus 49 ~~~F~~~~~-~~~~pdY~~iIk~PmdL~tI~~kl~ 82 (150)
T 3tlp_A 49 CDLFMVKPS-KKDYPDYYKIILEPMDLKIIEHNIR 82 (150)
T ss_dssp GGGGSSCCC-TTTCHHHHHHCSSCCCHHHHHHHHH
T ss_pred cHHhcCCCc-hhhCcCHHHHhCCCCCHHHHHHHHh
Confidence 345555544 3467899999999999999999885
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=36.18 E-value=8.9 Score=36.03 Aligned_cols=23 Identities=4% Similarity=-0.081 Sum_probs=21.2
Q ss_pred cchhhhhhccccchhHHHhhhcc
Q 007584 255 KMSEEKAARSSYCARAVEVERAK 277 (597)
Q Consensus 255 ~~~~~k~l~~~~d~~~~~~~lsk 277 (597)
.|+|+.+|+.|||+.+|+.+|..
T Consensus 110 ~pdY~~iIk~PmdL~tI~~kl~~ 132 (184)
T 3o36_A 110 VPDYYKIIKNPMDLSTIKKRLQE 132 (184)
T ss_dssp STTHHHHCSSCCCHHHHHHHHHS
T ss_pred CCchhhhcCCCCCHHHHHHHHHh
Confidence 68999999999999999999974
No 82
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.65 E-value=35 Score=37.92 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=8.8
Q ss_pred CCCChhhhHHHHHHHHHH
Q 007584 453 DKADPVKLQQEKERLEQR 470 (597)
Q Consensus 453 ~k~dp~~~~~e~~~~e~~ 470 (597)
++.-.+..+++++++++|
T Consensus 326 ~~~~~~~~~~~~~~~~~~ 343 (575)
T 2i1j_A 326 EIAARERAEKKQQEYQDR 343 (575)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 444444455555555544
No 83
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=25.73 E-value=1.1e+02 Score=30.70 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007584 474 EKARIEAQIKAAEAASRMKAEI 495 (597)
Q Consensus 474 e~ar~~a~~~a~e~~~~~~~~~ 495 (597)
++-|+|++.+.+|+.++++..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ 59 (323)
T 1ij5_A 38 DRDRLEAQIAQKEQEQKAKLAE 59 (323)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777776666655433
No 84
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=22.43 E-value=12 Score=35.71 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCcccchhhhhhc--cccchhHHHhhhccc
Q 007584 242 TPPLHSTLSSKKSKMSEEKAAR--SSYCARAVEVERAKP 278 (597)
Q Consensus 242 ~~P~~~~v~~K~~~~~~~k~l~--~~~d~~~~~~~lsk~ 278 (597)
++||..+|. ++||.+|+ .|||+.+|+.+|...
T Consensus 94 s~pF~~pV~-----~~Yy~iIk~~~PMDL~tIk~kL~~~ 127 (189)
T 2ro1_A 94 CRPLHQLAT-----DSTFSLDQPGGTLDLTLIRARLQEK 127 (189)
T ss_dssp HHHHHSCSC-----CTTCSSSCSSCCCCHHHHHHHHHTS
T ss_pred chhhcCCCC-----hhhhccccCCCcccHHHHHHHHhcC
Confidence 345554444 57899887 699999999999765
No 85
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=22.20 E-value=1.4e+02 Score=32.99 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=12.4
Q ss_pred ChhhhHHHHHHHHHHHHH
Q 007584 456 DPVKLQQEKERLEQRQRE 473 (597)
Q Consensus 456 dp~~~~~e~~~~e~~~~e 473 (597)
|.-|||||-|-.-|..||
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (536)
T 3err_A 3 DLKRLRQEPEVFHRAIRE 20 (536)
T ss_dssp CHHHHHSCHHHHHHHHHH
T ss_pred chHhhhcChHHHHHHHHH
Confidence 566777777777666665
No 86
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=20.04 E-value=5.1e+02 Score=23.76 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q 007584 524 NLEILKELEM 533 (597)
Q Consensus 524 ~~~~~~dle~ 533 (597)
-..||+.|-.
T Consensus 99 Y~~~L~~Li~ 108 (187)
T 3v6i_A 99 WPEVVRKLAL 108 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555543
Done!