BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007585
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 117/521 (22%), Positives = 209/521 (40%), Gaps = 63/521 (12%)
Query: 27 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 84
+G+ AF L ++L Y + LE +F LG LSI + ++ +V V+
Sbjct: 82 HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140
Query: 85 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 144
+ + G +L + + G VRS LEK+ L W+ G++ D
Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198
Query: 145 PYGEFFIAEDKSLLKESLTQDYD----------AKYWRQ------------------RYS 176
+ EFFI + S S + D K R+ ++S
Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258
Query: 177 LK-DGIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 229
L+ + +PS++ +A KIL G+ + + + V + +L +F + H L
Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314
Query: 230 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277
+ V + L L+ E DL+G+L+ IK + LL +G+ F+D
Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374
Query: 278 IAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE 337
A+ L +T + + D L ++E + AT
Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAR 432
Query: 338 IKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 397
S ++ E P S G LSYKVQWPL I+ + L KY +VF+ L + V+ +
Sbjct: 433 EGPSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAE 490
Query: 398 LCGAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQ 456
L W + + ++ T + L R+ + F +++L +YL +VLE + + +++
Sbjct: 491 LQHCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 548
Query: 457 TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 497
+ + + + HD FL L + + L + + + LC
Sbjct: 549 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLC 589
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 113/296 (38%), Gaps = 50/296 (16%)
Query: 19 VESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF-----RLG-------RLSIQGL 66
+ES + + +V SLRA+ +E + LE F RL R S GL
Sbjct: 84 LESLATVEETVVRDKAVESLRAI--SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGL 141
Query: 67 WFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
+ C P + S AV A + + N A + L AK + DN ++
Sbjct: 142 FSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM 199
Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYWRQRYSLKD 179
+ AS+ + E ++ + ED ++L+ +L Q + K WR RY + D
Sbjct: 200 FSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVAD 256
Query: 180 GIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN----------- 225
+ +I T + N+M++C A+V + + K+ F N
Sbjct: 257 KFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIM 314
Query: 226 HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277
L C+K A + L ++I ++GK +I+ L L FL D
Sbjct: 315 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLAQLKD 366
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 113/296 (38%), Gaps = 50/296 (16%)
Query: 19 VESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF-----RLG-------RLSIQGL 66
+ES + + +V SLRA+ +E + LE F RL R S GL
Sbjct: 86 LESLATVEETVVRDKAVESLRAI--SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGL 143
Query: 67 WFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
+ C P + S AV A + + N A + L AK + DN ++
Sbjct: 144 FSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM 201
Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYWRQRYSLKD 179
+ AS+ + E ++ + ED ++L+ +L Q + K WR RY + D
Sbjct: 202 FSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVAD 258
Query: 180 GIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN----------- 225
+ +I T + N+M++C A+V + + K+ F N
Sbjct: 259 KFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIM 316
Query: 226 HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277
L C+K A + L ++I ++GK +I+ L L FL D
Sbjct: 317 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLAQLKD 368
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 113/296 (38%), Gaps = 50/296 (16%)
Query: 19 VESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF-----RLG-------RLSIQGL 66
+ES + + +V SLRA+ +E + LE F RL R S GL
Sbjct: 93 LESLATVEETVVRDKAVESLRAI--SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGL 150
Query: 67 WFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
+ C P + S AV A + + N A + L AK + DN ++
Sbjct: 151 FSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM 208
Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYWRQRYSLKD 179
+ AS+ + E ++ + ED ++L+ +L Q + K WR RY + D
Sbjct: 209 FSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVAD 265
Query: 180 GIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN----------- 225
+ +I T + N+M++C A+V + + K+ F N
Sbjct: 266 KFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIM 323
Query: 226 HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277
L C+K A + L ++I ++GK +I+ L L FL D
Sbjct: 324 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLAQLKD 375
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 113/296 (38%), Gaps = 50/296 (16%)
Query: 19 VESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF-----RLG-------RLSIQGL 66
+ES + + +V SLRA+ +E + LE F RL R S GL
Sbjct: 92 LESLATVEETVVRDKAVESLRAI--SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGL 149
Query: 67 WFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
+ C P + S AV A + + N A + L AK + DN ++
Sbjct: 150 FSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM 207
Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYWRQRYSLKD 179
+ AS+ + E ++ + ED ++L+ +L Q + K WR RY + D
Sbjct: 208 FSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVAD 264
Query: 180 GIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN----------- 225
+ +I T + N+M++C A+V + + K+ F N
Sbjct: 265 KFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIM 322
Query: 226 HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277
L C+K A + L ++I ++GK +I+ L L FL D
Sbjct: 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLAQLKD 374
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 113/296 (38%), Gaps = 50/296 (16%)
Query: 19 VESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF-----RLG-------RLSIQGL 66
+ES + + +V SLRA+ +E + LE F RL R S GL
Sbjct: 92 LESLATVEETVVRDKAVESLRAI--SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGL 149
Query: 67 WFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
+ C P + S AV A + + N A + L AK + DN ++
Sbjct: 150 FSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM 207
Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYWRQRYSLKD 179
+ AS+ + E ++ + ED ++L+ +L Q + K WR RY + D
Sbjct: 208 FSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVAD 264
Query: 180 GIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN----------- 225
+ +I T + N+M++C A+V + + K+ F N
Sbjct: 265 KFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIM 322
Query: 226 HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277
L C+K A + L ++I ++GK +I+ L L FL D
Sbjct: 323 TQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLAQLKD 374
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 113/296 (38%), Gaps = 50/296 (16%)
Query: 19 VESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF-----RLG-------RLSIQGL 66
+ES + + +V SLRA+ +E + LE F RL R S GL
Sbjct: 93 LESLATVEETVVRDKAVESLRAI--SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGL 150
Query: 67 WFYCQPMLGSMQAVSAVIHKASAN------NFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
+ C P + S AV A + + N A + L AK + DN ++
Sbjct: 151 FSVCYPRVSS--AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM 208
Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYWRQRYSLKD 179
+ AS+ + E ++ + ED ++L+ +L Q + K WR RY + D
Sbjct: 209 FSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVAD 265
Query: 180 GIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN----------- 225
+ +I T + N+M++C A+V + + K+ F N
Sbjct: 266 KFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIM 323
Query: 226 HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277
L C+K A + L ++I ++GK +I+ L L FL D
Sbjct: 324 TQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL----FLAQLKD 375
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 113/296 (38%), Gaps = 50/296 (16%)
Query: 19 VESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQF-----RLG-------RLSIQGL 66
+ES + + +V SLRA+ +E + LE F RL R S GL
Sbjct: 86 LESLATVEETVVRDKAVESLRAI--SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGL 143
Query: 67 WFYCQPMLGSMQAVSAVIHKASANNFTGS------AVLNLLQSQAKAMAGDNTVRSLLEK 120
+ C P + S AV A + + N + A + L AK + DN ++
Sbjct: 144 FSVCYPRVSS--AVKAELRQYFRNLCSDDTPXVRRAAASKLGEFAKVLELDNVKSEIIPX 201
Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAED-KSLLKESLTQDYDAKYWRQRYSLKD 179
+ AS+ + E ++ + ED ++L+ +L Q + K WR RY + D
Sbjct: 202 FSNLASDEQDSV-RLLAVEACVN--IAQLLPQEDLEALVXPTLRQAAEDKSWRVRYXVAD 258
Query: 180 GIPSFLANIAGKILTTG---KYLNVMRECGHSAQVPTSENSKLLSFGSN----------- 225
+ +I T + N+ ++C A+V + + K+ F N
Sbjct: 259 KFTELQKAVGPEITKTDLVPAFQNLXKDC--EAEVRAAASHKVKEFCENLSADCRENVIX 316
Query: 226 HHYLECVKV----AYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277
L C+K A + L ++I ++GK +I+ L L FL D
Sbjct: 317 SQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPL----FLAQLKD 368
>pdb|4H6U|A Chain A, Tubulin Acetyltransferase Mutant
pdb|4H6U|B Chain B, Tubulin Acetyltransferase Mutant
Length = 200
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 216 NSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 266
S+L F H +E ++AY+ S + L+ +++RYDL + + +++
Sbjct: 134 GSELFDFMLKHKQVEPAQMAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 184
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 292 VEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPV 351
V + S +DI + + + H D R LK EI S+ L +P
Sbjct: 106 VSEFNSRVDIVIXNPPFGSQRKHAD------------RPFLLKAFEISDVVYSIHLAKPE 153
Query: 352 SITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVER 396
+E FS W V++ + TK ++ + FH K +ER
Sbjct: 154 VRRFIEKFS------WEHGFVVTHRLTTKIEIPLQFFFHRKKLER 192
>pdb|4HKF|A Chain A, Crystal Structure Of Danio Rerio Mec-17 Catalytic Domain
In Complex With Acetyl-Coa
Length = 191
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 217 SKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 266
S+L F H +E + AY+ S + L+ +++RYDL + + +++
Sbjct: 133 SELFDFXLKHKQVEPAQXAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 182
>pdb|4H6Z|A Chain A, Tubulin Acetyltransferase
pdb|4H6Z|B Chain B, Tubulin Acetyltransferase
Length = 190
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 217 SKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLL 266
S+L F H +E + AY+ S + L+ +++RYDL + + +++
Sbjct: 135 SELFDFXLKHKQVEPAQXAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVF 184
>pdb|3FY3|A Chain A, Crystal Structure Of Truncated Hemolysin A From P.
Mirabilis
Length = 236
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 200 NVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRS 259
N + E G T N+ LLS G N + LL+LI R D GK+ +
Sbjct: 132 NPLFENGQLKGYSTLNNTNLLSLGKNG-----------LNTTGLLDLIAPRIDSRGKITA 180
Query: 260 IKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQS 297
+ Q F HF ++ ++ + LD +QS
Sbjct: 181 AEISAFTGQNTFSQHFDILSSQKPVSALDSYFFGSMQS 218
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 460 SIDEVIQHHDF--FLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLIS---SSIDL 514
++ E I HD + + E L L L KVER+K ++Y+ AT ++I+ +S +L
Sbjct: 248 AVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPAEASSNL 307
Query: 515 PKLEEPSDGFSGSEKFKR---LKLRSLSQVQKV--MIRDATVTESILKFEREFNNELQ 567
+ + G EK R +K R++ ++V I T T S +E FN ++
Sbjct: 308 ARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMK 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,949,958
Number of Sequences: 62578
Number of extensions: 607771
Number of successful extensions: 1607
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1596
Number of HSP's gapped (non-prelim): 21
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)