Query 007585
Match_columns 597
No_of_seqs 225 out of 840
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 12:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 5.8E-95 1.3E-99 742.2 54.1 562 1-575 146-715 (734)
2 KOG2065 Gamma-tubulin ring com 100.0 1.3E-73 2.8E-78 559.5 41.2 547 1-597 43-665 (679)
3 PF04130 Spc97_Spc98: Spc97 / 100.0 3E-64 6.5E-69 556.0 41.4 470 1-480 41-542 (542)
4 KOG2000 Gamma-tubulin complex, 100.0 1.5E-47 3.2E-52 416.1 34.6 473 2-506 248-761 (879)
5 KOG4344 Uncharacterized conser 100.0 1.5E-28 3.3E-33 249.8 32.5 560 2-593 339-1113(1121)
6 KOG4344 Uncharacterized conser 45.8 10 0.00023 41.1 1.4 141 10-154 428-580 (1121)
7 PF13060 DUF3921: Protein of u 28.1 97 0.0021 21.5 3.3 47 435-481 4-51 (58)
8 PF10749 DUF2534: Protein of u 25.6 37 0.0008 26.6 1.1 27 366-392 48-75 (85)
9 PLN00032 DNA-directed RNA poly 22.4 89 0.0019 23.9 2.6 47 439-486 9-55 (71)
10 PF08673 RsbU_N: Phosphoserine 21.5 3.1E+02 0.0067 21.5 5.6 43 455-500 31-73 (77)
11 PF14966 DNA_repr_REX1B: DNA r 20.0 5E+02 0.011 21.3 7.6 62 9-70 16-79 (97)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=5.8e-95 Score=742.19 Aligned_cols=562 Identities=45% Similarity=0.746 Sum_probs=490.0
Q ss_pred ChhhHhhHHhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhHHHHHHH
Q 007585 1 MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAV 80 (597)
Q Consensus 1 ~~~~il~~g~~~~~L~~fi~~~~~~~~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L 80 (597)
++++++|+|.+|..+++||+..+.+.+|.|.+|+|+|+++++.+|+..|.++|++.+.+.+|+++||++++|++..|+.+
T Consensus 146 la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l 225 (734)
T KOG2001|consen 146 LAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYDYYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRL 225 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHH
Confidence 47899999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCCceeeeCCccccc
Q 007585 81 SAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKE 160 (597)
Q Consensus 81 ~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~D~~~EFfI~~~~~~~~~ 160 (597)
+..++.+..+.++||.+|+.+++++..+.||+..+.++.+++++++.||++|+.+|+..|.++|||+||||.++ ..+++
T Consensus 226 ~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~ 304 (734)
T KOG2001|consen 226 AVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKE 304 (734)
T ss_pred HHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccccCchHhHhhhhc-chhhh
Confidence 98888888789999999999999998899999999999999999999999999999999999999999999999 66777
Q ss_pred ccccccchhhhcccccc-ccCCCcchHHhHHHHHhhhhHHHHHHHhcCCCCCCcccccccc-cCCCcccHHHHHHHHHHH
Q 007585 161 SLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-SFGSNHHYLECVKVAYEF 238 (597)
Q Consensus 161 ~~~~~~~~~~W~~~y~l-~~~lP~Fl~~~a~~Il~~GK~l~~lr~~~~~~~~p~~e~~~~~-~f~~~~~~~~~I~~~~~~ 238 (597)
.++.|+.++||+++|+| +|.+|+|+...|+|||.||||+|++|+||+.++.|.+.+.... ....+..+.+.|+++|..
T Consensus 305 ~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvReC~~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~ 384 (734)
T KOG2001|consen 305 DLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVRECGKIVTIPQSSNEINDPADLMESNHEEYIKKAYEF 384 (734)
T ss_pred cCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHHHhCccCCCCcchhhhccccccchhhHHHHHHHHHHH
Confidence 78889999999999999 8999999999999999999999999999999887755432111 111237789999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhHhHhcCCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-hhhcCCCCCCCcc
Q 007585 239 ASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDL 317 (597)
Q Consensus 239 ~s~~l~~ll~~~~~L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l 317 (597)
||..++++++++++|..||+++|+||||.+|||+.+|++.+.++|.++.+.+++.+|+++|+.|++ .+.+.+||+++++
T Consensus 385 A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L 464 (734)
T KOG2001|consen 385 ANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDL 464 (734)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhhe
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7777899999999
Q ss_pred ceeeccccHHHHHhhhhccccccCCCCCCCCCC---CCCcceeEEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHH
Q 007585 318 TCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHV 394 (597)
Q Consensus 318 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFrfLl~lk~~ 394 (597)
+|.+.+.+++.+++.+-+++..+-+ +....+| .++.|++.+.++|+|||||++||++++|.|||.|||+++.||++
T Consensus 465 ~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhV 543 (734)
T KOG2001|consen 465 KICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHV 543 (734)
T ss_pred eeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877544421111 1112233 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCch-hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHH
Q 007585 395 ERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLD 473 (597)
Q Consensus 395 ~~~L~~~w~~~~~~~~~~~~~-~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~~~~f~~~l~~~~~~d~l~~~H~~fL~ 473 (597)
+++|+++|..++..|+.+..+ ++.+.++.+|++|++||+++.+|++.+||||+|..|+..+++++++|+++..|+.|||
T Consensus 544 erqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld 623 (734)
T KOG2001|consen 544 ERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLD 623 (734)
T ss_pred HHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 999999999998877666544 4567788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHH
Q 007585 474 KCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVT 552 (597)
Q Consensus 474 ~i~~~c~L~~~-~l~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (597)
.|++.|||+.+ .+.+.+.++..+|+.||..++.+.+.. .. ++..+..+ .|.+ .. .+.+.+.+ -.+.+.
T Consensus 624 ~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~-~~--~~~~~~~~-~~~~-d~--~~k~~~t~----li~~le 692 (734)
T KOG2001|consen 624 TCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD-PT--DEEKNSVG-HPQF-DE--GRKEDDTL----LISKLE 692 (734)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc-ch--hhhhcccc-ccch-hh--hhhhhhHH----HHHHHH
Confidence 99999999976 889999999999999999999887421 00 11111111 0111 00 01011111 022334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 007585 553 ESILKFEREFNNELQSLGPILSS 575 (597)
Q Consensus 553 ~~i~~~~~~F~~~~~~l~~~l~~ 575 (597)
+-+.+.+..|++|++.|+..|++
T Consensus 693 ei~~~~~~~f~~~l~~L~~rlsk 715 (734)
T KOG2001|consen 693 EIISNADKNFRDCLKNLLQRLSK 715 (734)
T ss_pred HHHHHhHHHHHHHHHHHHHHccc
Confidence 55677999999999999999994
No 2
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-73 Score=559.48 Aligned_cols=547 Identities=21% Similarity=0.339 Sum_probs=434.4
Q ss_pred ChhhHhhHHhHHHHHHHHH---hccc---------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCC
Q 007585 1 MAKRIFPLCESFVLTGQFV---ESRS---------------QFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRL 61 (597)
Q Consensus 1 ~~~~il~~g~~~~~L~~fi---~~~~---------------~~~~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~~-~~l 61 (597)
+++++.++|+.|+.+.+|. +++. ..-+|.|.+|||.||..+|++|+..|..+|+.+.. +..
T Consensus 43 i~~rliklg~~Y~e~~rFtswIrsvTsH~~~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~ 122 (679)
T KOG2065|consen 43 IFMRLIKLGKVYQEVERFTSWIRSVTSHSSGRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERN 122 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3689999999998888875 2221 12478999999999999999999999999999754 578
Q ss_pred chHHHHHHhhhhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcce
Q 007585 62 SIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGV 141 (597)
Q Consensus 62 sL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~ 141 (597)
||..++..+......+..+..+|.++...+.+||+||+.||++ .||.|.++..+.+++..|..++++++..||.+|.
T Consensus 123 sls~V~~~L~~ff~Lfp~~~~vi~eI~~~~irGcqlL~~l~k~---HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gv 199 (679)
T KOG2065|consen 123 SLSYVYNALYAFFPLFPFMRNVITEIHVLNIRGCQLLHNLHKQ---HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGV 199 (679)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhHHHHHHHHh---ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 8999998888888999999999999998899999999999996 4899999999999999999999999999999999
Q ss_pred ecCCCCCceeeeCCc--ccccccccccchhhh-----------cccccc-----ccCCCcchHH-hHHHHHhhhhHHHHH
Q 007585 142 IDDPYGEFFIAEDKS--LLKESLTQDYDAKYW-----------RQRYSL-----KDGIPSFLAN-IAGKILTTGKYLNVM 202 (597)
Q Consensus 142 l~D~~~EFfI~~~~~--~~~~~~~~~~~~~~W-----------~~~y~l-----~~~lP~Fl~~-~a~~Il~~GK~l~~l 202 (597)
+.|+++||||+..+. .+.++.+....++.- -..|.+ -...|.|.+- .+.++|+.|+...+.
T Consensus 200 l~D~H~EFFIK~q~~~~~d~ss~~ee~~e~L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~ 279 (679)
T KOG2065|consen 200 LDDVHSEFFIKFQPTDAVDGSSFSEEATESLLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVF 279 (679)
T ss_pred hcccchheEEeccCCCCCCcccCchhhhhhhhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHH
Confidence 999999999995442 111111000000000 012333 1246788887 899999999998888
Q ss_pred HHhcCCC-------CCCccccc--------ccccCCC-----------------cccHHHHHHHHHHHHHHHHHHHHHhh
Q 007585 203 RECGHSA-------QVPTSENS--------KLLSFGS-----------------NHHYLECVKVAYEFASGELLNLIKER 250 (597)
Q Consensus 203 r~~~~~~-------~~p~~e~~--------~~~~f~~-----------------~~~~~~~I~~~~~~~s~~l~~ll~~~ 250 (597)
+.-.... +.|..|.. .+.+-.+ ...|...|+..++.|+.+||++.+++
T Consensus 280 ~~~R~~~~i~F~~~~~~~~e~eld~dlt~G~ll~~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e 359 (679)
T KOG2065|consen 280 KMGRNVKVINFKTDPLAAKEAELDSDLTYGQLLSGREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNE 359 (679)
T ss_pred hhccceeeeeccCCchhhHHhhccccchhhhhcCCChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7532110 11111110 0110000 03466789999999999999999999
Q ss_pred ccHHHHHHHHhHhHhcCCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhcCCCCCCCccceeeccccH--HH
Q 007585 251 YDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSL--LK 328 (597)
Q Consensus 251 ~~L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~~~~~~l--~~ 328 (597)
.+|.+||+++|+|||||+|||+..|++.+...|+.|++..+.++++..++.|...+....|.|-+.++..+....= ..
T Consensus 360 ~DL~gqlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~tE~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~~a 439 (679)
T KOG2065|consen 360 VDLEGQLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERTEKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSEPA 439 (679)
T ss_pred HhHHhHHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhcccccchhhhhhhhhccccccccccceEEEecccCCCCcc
Confidence 9999999999999999999999999999999999999888888888899998777667777776666665543320 00
Q ss_pred HHhhhhccccccCCCCCCCCCCCCCcceeEEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007585 329 RMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGA 408 (597)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFrfLl~lk~~~~~L~~~w~~~~~~ 408 (597)
+.. +.+ ++.+......+..|||++.|.|+|.|||+++|||.++++||.||+||+++||.++.|+.+|...+..
T Consensus 440 D~~-----~~~--tGka~ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r 512 (679)
T KOG2065|consen 440 DTS-----DFN--TGKAFLTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWR 512 (679)
T ss_pred chh-----hhc--cCcccccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 0111122345689999999999999999999999999999999999999999999999999865532
Q ss_pred ccc----CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh
Q 007585 409 RAF----NASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP 484 (597)
Q Consensus 409 ~~~----~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~~~~f~~~l~~~~~~d~l~~~H~~fL~~i~~~c~L~~~ 484 (597)
... ++-+..++ |++|+.|.+|++|+|+|+++||||++|..++..|+...||+.|..+|..||.+++.+|||..+
T Consensus 513 ~h~~s~q~~d~~~I~--WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~ 590 (679)
T KOG2065|consen 513 AHSASDQPPDNKIIT--WRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNE 590 (679)
T ss_pred HHhhccCCCCCccch--HHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111 11122333 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 007585 485 DLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNN 564 (597)
Q Consensus 485 ~l~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~ 564 (597)
++..++.+|+++|.+||+++..-. . + .+...++++.+.+.|.+
T Consensus 591 pV~~~L~~i~~lC~~Fcn~~~Q~~------~-P------------------------------~d~~~~el~~l~e~F~~ 633 (679)
T KOG2065|consen 591 PVYGTLLKIFGLCEKFCNHMTQTK------D-P------------------------------SDDLEDELDQLNESFGV 633 (679)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccC------C-C------------------------------cccchHHHHHHHHHhhh
Confidence 999999999999999998775411 0 0 01124688999999999
Q ss_pred HHHHHHHHhcccccccchHHHHHHHHhccCCCC
Q 007585 565 ELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK 597 (597)
Q Consensus 565 ~~~~l~~~l~~~~~~~~~~~~l~~ll~rld~n~ 597 (597)
+...|+++|++. ++....+.|+|||+|||||+
T Consensus 634 qs~sL~~iL~sv-k~~q~~~~L~qlLLRLdfN~ 665 (679)
T KOG2065|consen 634 QSASLIQILVSV-KSAQCLGPLSQLLLRLDFNC 665 (679)
T ss_pred hHHHHHHHHHHc-cccccccHHHHHHHHhchhH
Confidence 999999999996 78889999999999999996
No 3
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=3e-64 Score=556.01 Aligned_cols=470 Identities=29% Similarity=0.571 Sum_probs=330.5
Q ss_pred ChhhHhhHHhHHHHHHHHHhcccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchHHHHHHhhhhHHHH
Q 007585 1 MAKRIFPLCESFVLTGQFVESRSQF--KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSM 77 (597)
Q Consensus 1 ~~~~il~~g~~~~~L~~fi~~~~~~--~~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~~-~~lsL~~L~~~~~~~~~~l 77 (597)
++++++++|+.|++|++|++..... ..|++.+|||++|+++|.+|+..|..+|+++.. +.+||..+...++|+...+
T Consensus 41 ~l~~i~~~g~~~~~l~~~i~~~~~~~~~~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~~~~sL~~l~~~l~~~~~~l 120 (542)
T PF04130_consen 41 ILNEILEIGTLYRRLRSFIERVSSSSSERGPTLQAFASALSSILQEYREFLSELEESILSNGSLSLLQLLAQLRPWFRRL 120 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS----S-SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999976443 489999999999999999999999999999876 7899999999999999999
Q ss_pred HHHHHHHHHh----hcCCCcchhHHHHHHHHH-HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCCceee
Q 007585 78 QAVSAVIHKA----SANNFTGSAVLNLLQSQA-KAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIA 152 (597)
Q Consensus 78 ~~L~~i~~~~----~~~~~~g~~lL~~L~~~~-~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~D~~~EFfI~ 152 (597)
+.|++++.++ ..+..+|+.||+.||+.+ ...+|++..++++..|+..+++||++++..||.+|.+.||++||||+
T Consensus 121 ~~L~~l~~~~~~~~~~~~~~g~~lL~~L~~~~~~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~ 200 (542)
T PF04130_consen 121 EALADLIQEIIQLSLSQNLRGGQLLSILYERIYHQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQ 200 (542)
T ss_dssp HHHHHHHHHH----HHHT--THHHHHHHHHHH---HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEE
T ss_pred HHHHHHHHHHhhhccccCCcHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEe
Confidence 9999999986 334789999999999987 33589999999999999999999999999999999999999999999
Q ss_pred eCCcccccccccccchhhhcccccc-ccCCCcchHH-hHHHHHhhhhHHHHHHHhcCCCCCCcccccc------------
Q 007585 153 EDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSENSK------------ 218 (597)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~W~~~y~l-~~~lP~Fl~~-~a~~Il~~GK~l~~lr~~~~~~~~p~~e~~~------------ 218 (597)
.+++. ......++|+.+|.+ .+.+|.|++. +|++|+.+||++++|+.|+............
T Consensus 201 ~~~~~-----~~~~~~~~w~~~f~l~~~~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (542)
T PF04130_consen 201 RNKES-----NSESSEDFWDDRFVLRESRVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQELSSDLCLSDKESSE 275 (542)
T ss_dssp E---------------------EEE-GGGS-TTS-HHHHHHHHHHHHHHHT------S------TT-SHHH----HHHHH
T ss_pred ecccc-----cCcccchhhccCEEECcccCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhccchhhhhhhhhhhhh
Confidence 98321 122357899999999 7899999955 9999999999999999997764321111000
Q ss_pred ---cccC--CCcccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhHhHhcCCCchHHHHHHHHHHHHhcccccccHH
Q 007585 219 ---LLSF--GSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVE 293 (597)
Q Consensus 219 ---~~~f--~~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~ 293 (597)
...+ .....+.+.|++++..+++.++++++++++|.+||+++|+||||++|||+..|++.+++.+.++..+.+..
T Consensus 276 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~l~~~l~~l~~~~Ll~~gdf~~~f~~~l~~~l~~~~~~~~~~ 355 (542)
T PF04130_consen 276 SSSLQPFEPLDQDKLESKIESQYKLVNKSLLDLLFEDYNLLEHLKALRDFFLLGDGDFADSFLESLFEKLESPSSRSSDS 355 (542)
T ss_dssp HHHHHT-SS--HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHSS---TTHHH
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCccccchh
Confidence 0011 12256778999999999999999999999999999999999999999999999999999999988888878
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCccceeeccccHHHHHhhhhccccccCCCCCCCCCCCCCcceeEEEeeeecCCcceeee
Q 007585 294 KLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVI 373 (597)
Q Consensus 294 ~L~~~l~~al~~s~~~~d~~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lil 373 (597)
.++..++.++........+...... . ........... ..... .........+.+..+|+.+.|+|++||||++||
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~L~y~~~~PL~lil 430 (542)
T PF04130_consen 356 NLNSILQEALRASSADWSDESSNLR-S-GEISSSTSLSS--NLSSN-DSSSRNSNNSSSLEGWDALTLSYKVPWPLNLIL 430 (542)
T ss_dssp HHHHHHHHHHHHTT---TTSGGGEE-E----------------------------------TTTTEEEEE---TTGGGTS
T ss_pred hHHHHHHHHHHhCccccccchhhhh-h-ccccccccchh--hhhhh-hhhcccccccccccccceeEEEecCCccHHHHh
Confidence 8888888888765433222110000 0 00000000000 00000 000112244567899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cc----CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccH
Q 007585 374 SRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGAR-AF----NASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW 448 (597)
Q Consensus 374 t~~~l~~Y~~iFrfLl~lk~~~~~L~~~w~~~~~~~-~~----~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~~ 448 (597)
|+++|.+|++||+|||++|++++.|+++|...+..+ .. ......+++++.+|++|.||++++++|++.+||++.|
T Consensus 431 t~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~ 510 (542)
T PF04130_consen 431 TPSVMEKYNRIFRFLLQLKRAEWALQSVWRQLRRLSRKFGKPDRQSRPQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSW 510 (542)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGG--------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999876421 11 1123457888999999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhc
Q 007585 449 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECL 480 (597)
Q Consensus 449 ~~f~~~l~~~~~~d~l~~~H~~fL~~i~~~c~ 480 (597)
.+|.++++++.|+|+|+++|++||++|++.||
T Consensus 511 ~~f~~~l~~~~~~d~l~~~H~~yL~~i~~~~f 542 (542)
T PF04130_consen 511 SEFMEKLEKAKSLDELIEAHDDYLDRILRRCF 542 (542)
T ss_dssp HHHHHHHHT---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999997
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=1.5e-47 Score=416.09 Aligned_cols=473 Identities=27% Similarity=0.425 Sum_probs=396.2
Q ss_pred hhhHhhHHhHHHHHHHHHhcccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----------CCchHHHH
Q 007585 2 AKRIFPLCESFVLTGQFVESRSQF---KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG-----------RLSIQGLW 67 (597)
Q Consensus 2 ~~~il~~g~~~~~L~~fi~~~~~~---~~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~~~-----------~lsL~~L~ 67 (597)
...+-++|..|.++..|+...... ..|++.+||++++++.+++|+..+..+..++... .+++..++
T Consensus 248 ~~~lSelg~l~~~~~~~~~~~~l~~~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~l 327 (879)
T KOG2000|consen 248 LYLLSELGVLYQRVSTFSDQLVLDNPYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLL 327 (879)
T ss_pred HHHHHHHhHHHHhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHH
Confidence 346778999999999998875322 4899999999999999999999999998876321 13666777
Q ss_pred HHhhhhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCC
Q 007585 68 FYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYG 147 (597)
Q Consensus 68 ~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~D~~~ 147 (597)
.++......|+.+..+++.+. ..+|+.++..++... .+|++.++.+...++...+.|+.+++..|+..|.+.|+|+
T Consensus 328 a~~~~~~~rl~i~~~l~e~~~--~~~g~~l~~~~~~f~--~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~ 403 (879)
T KOG2000|consen 328 AWIYEPGIRLQILCKLVEHCQ--VPKGGKLLSAVHEFL--THGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYG 403 (879)
T ss_pred HHHhhcchhhhHHHHHHHHhc--ccCCCcchHHHHHHH--HhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCccccccc
Confidence 777777788999999999886 788889999999875 5999999999999999999999999999999999999999
Q ss_pred CceeeeCCcccccccccccchhhhcccccc-ccCCCcchHH-hHHHHHhhhhHHHHHHHhcCCCCCCccccc--------
Q 007585 148 EFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSENS-------- 217 (597)
Q Consensus 148 EFfI~~~~~~~~~~~~~~~~~~~W~~~y~l-~~~lP~Fl~~-~a~~Il~~GK~l~~lr~~~~~~~~p~~e~~-------- 217 (597)
||||.+++.... -..+..|+..|.+ .+++|+|++. +|.+|+.|||++++++.|+++..|...-..
T Consensus 404 EFfV~~~~~~~~-----~~~d~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~~~~~~s~ 478 (879)
T KOG2000|consen 404 EFFVAENPDPGS-----VKDDRLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAKASVEESS 478 (879)
T ss_pred ceEEeccCCCCc-----cccccccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHHHHHhhhh
Confidence 999999886432 1246899999999 6999999999 999999999999999999887654321110
Q ss_pred -ccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhHhHhcCCCchHHHHHHHHHHHHhcccccccHHHHH
Q 007585 218 -KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQ 296 (597)
Q Consensus 218 -~~~~f~~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~ 296 (597)
.-..++....+...|+++|....+++.+++.+.+.+.+|+.++|+|.|+|.|||+..+++.+.+.+..|...+..+.|+
T Consensus 479 ~~~l~~~~~~~l~~~v~~ay~e~inhl~~ll~~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~~~~lt 558 (879)
T KOG2000|consen 479 TRDLEYASDVGLLGSVSEAYSEIVNHLNDILEEVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLPEHKLT 558 (879)
T ss_pred hhhhccCCChhHHHHHhhhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchhhhHhHHH
Confidence 0112333456778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCCCCCccceeeccccHHHHHhhhhccccccCCCCCCCCCCCCCcceeEEEeeeecCCcceeeech
Q 007585 297 SLLDIALRST-AAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISR 375 (597)
Q Consensus 297 ~~l~~al~~s-~~~~d~~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~ 375 (597)
..++.|+|.+ .++.||- +...++ +++.. .-..+..|||.+.++|.+.-|+++++|+
T Consensus 559 ~~ldsaiR~s~na~yd~~-----------~vL~Rl------d~~~~------~~~~gd~gwdvfsl~y~v~~p~s~v~t~ 615 (879)
T KOG2000|consen 559 GVLDSAVRSSLNAQYDDR-----------DVLNRL------DVRVL------KLSHGDDGWDVFSLDYAVDGPLSLVLTR 615 (879)
T ss_pred HHHHHHHhhhhccccCCh-----------hhhhhh------hhHhh------hccCCcccceeeeecceecccHHHHhhH
Confidence 9999999998 6665542 111221 22111 1135678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhh-cc--cc----C--CchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007585 376 KALTKYQMVFRLLFHCKHVERQL-CGAWQVHQG-AR--AF----N--ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLE 445 (597)
Q Consensus 376 ~~l~~Y~~iFrfLl~lk~~~~~L-~~~w~~~~~-~~--~~----~--~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe 445 (597)
+++.+|-+||+|+|++||+++.| ...|+..+. .+ .. . ......+++..+..+|.||+.++++|+..+|||
T Consensus 616 ~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie 695 (879)
T KOG2000|consen 616 ELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFISQMQYYILFEVIE 695 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHHhhhhccccchhh
Confidence 99999999999999999999999 789998773 11 10 0 112345677788899999999999999999999
Q ss_pred ccHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhcCCC-h---hHHHHHHHHHHHHHHHHHHHHH
Q 007585 446 PNWHVMHNRLQTAKS-IDEVIQHHDFFLDKCLRECLLHL-P---DLLKKVERLKSLCLQYAAATQW 506 (597)
Q Consensus 446 ~~~~~f~~~l~~~~~-~d~l~~~H~~fL~~i~~~c~L~~-~---~l~~~l~~il~~~~~F~~~~~~ 506 (597)
.+|+.|..+++.+.+ .|..+++|+-|++.|.-.|++.+ + .+...+..++..++.+......
T Consensus 696 ~~wk~l~~~~~~a~~~ld~~~eah~~~~~ti~i~~~l~~~~~~~s~~~~l~~l~e~Il~~~~~~~~ 761 (879)
T KOG2000|consen 696 CSWKELSKKMEPARNPLDFQLEAHRPFLDTISIRGILQEKASVESIEHSLSALLELILNLAELQSS 761 (879)
T ss_pred cChHHHHHHHhhccCchHHHHhhccccccceeecccccCcccchhhHHhHHHHHHHHhhhhccccc
Confidence 999999999999999 99999999999999999999996 3 3778888888888888876544
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=249.76 Aligned_cols=560 Identities=18% Similarity=0.207 Sum_probs=360.2
Q ss_pred hhhHhhHHhHHHHHHHHHhcccCCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCC
Q 007585 2 AKRIFPLCESFVLTGQFVESRSQFK------------------NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL--GRL 61 (597)
Q Consensus 2 ~~~il~~g~~~~~L~~fi~~~~~~~------------------~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~~--~~l 61 (597)
++.+.-+|.....|..|+......+ +=.+-+||--++-+.--.|.+.++.+++-+.+ ..+
T Consensus 339 leqiaalghnafgLlafidekmghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcianndqnf 418 (1121)
T KOG4344|consen 339 LEQIAALGHNAFGLLAFIDEKMGHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIANNDQNF 418 (1121)
T ss_pred HHHHHHhhhhHHHHHhccchhccCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhcCCcee
Confidence 3566778888889999987642211 11244566555555555677788888876544 345
Q ss_pred chHHHHHHhhhhHHH--HHHHHHHHHHh--h-----cCCCcchhHHHHHHHHHHhc--cCC--hHH-HHHHHHHHHHHHH
Q 007585 62 SIQGLWFYCQPMLGS--MQAVSAVIHKA--S-----ANNFTGSAVLNLLQSQAKAM--AGD--NTV-RSLLEKMTQCASN 127 (597)
Q Consensus 62 sL~~L~~~~~~~~~~--l~~L~~i~~~~--~-----~~~~~g~~lL~~L~~~~~~~--~g~--~~~-~~~l~~Ll~~~~~ 127 (597)
.|..+...+.+.+.. +..+..+.-.- + ........|++-+++.+..+ .|+ +.- ..++..|.-....
T Consensus 419 lLadVVdaLadmlelrhiidlHklffhGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehf 498 (1121)
T KOG4344|consen 419 LLADVVDALADMLELRHIIDLHKLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHF 498 (1121)
T ss_pred eHHHHHHHHHHHHhhHHHHHHHHHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhh
Confidence 566665555554432 22222222110 0 01223357999999976643 343 222 2344556778899
Q ss_pred HHHHHHHHHHhcceecCCCCCceeeeCCcccccccccccchhhhc---------------ccccc-----------c---
Q 007585 128 AYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWR---------------QRYSL-----------K--- 178 (597)
Q Consensus 128 p~~~~l~~Wi~~G~l~D~~~EFfI~~~~~~~~~~~~~~~~~~~W~---------------~~y~l-----------~--- 178 (597)
|+++.+.+|+..|.+.|+..||.|....+.--. ..++|- ++|.+ .
T Consensus 499 pqLqlldElaedghLddGaaefiiarlknrlvk------Hrdfqyaphqklataekfeneekmcdiadassgraagedhl 572 (1121)
T KOG4344|consen 499 PQLQLLDELAEDGHLDDGAAEFIIARLKNRLVK------HRDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHL 572 (1121)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHhccccc------cchhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHH
Confidence 999999999999999999999999876542100 112221 11111 1
Q ss_pred -cCCCcchHHhHHHHHhhhhHHHHHHH--hcCCC----------C-C----------------------Ccc--c----c
Q 007585 179 -DGIPSFLANIAGKILTTGKYLNVMRE--CGHSA----------Q-V----------------------PTS--E----N 216 (597)
Q Consensus 179 -~~lP~Fl~~~a~~Il~~GK~l~~lr~--~~~~~----------~-~----------------------p~~--e----~ 216 (597)
+-+-+|..+.-..|..+||..+.++. |..+. + . |.. | +
T Consensus 573 qefiVeFckeedaniimagkrkqllgnlqcaEddKOGaeafdaeqscpLYqLfLEhalergehgddlcspntLsEmlqan 652 (1121)
T KOG4344|consen 573 QEFIVEFCKEEDANIIMAGKRKQLLGNLQCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDLCSPNTLSEMLQAN 652 (1121)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccccccchhhHHHHhhhhhhcCcHHHHHHHHHHHhccccccccCHHHHHHHHhhc
Confidence 12335556644578899999999874 32211 0 0 000 0 0
Q ss_pred cc--c-----------------------ccCCC--------------------------c---------ccHHHHHHHH-
Q 007585 217 SK--L-----------------------LSFGS--------------------------N---------HHYLECVKVA- 235 (597)
Q Consensus 217 ~~--~-----------------------~~f~~--------------------------~---------~~~~~~I~~~- 235 (597)
.. + ..|.+ + .-+.+.|+++
T Consensus 653 kEiqLmklhdeaeshffalddVhcgadaidfadepeedkDfedkfacgdvcvdrsqeirncelFaiflqpclephidkQr 732 (1121)
T KOG4344|consen 653 KEIQLMKLHDEAESHFFALDDVHCGADAIDFADEPEEDKDFEDKFACGDVCVDRSQEIRNCELFAIFLQPCLEPHIDKQR 732 (1121)
T ss_pred cccchhhHHHHHHHhHHHHhhccCcccccchhhCCCccccHHHhhccccccccccccceehhhHHHHhhhhhhHHHHHHH
Confidence 00 0 00100 0 1123568888
Q ss_pred -HHHHHHHHHHHHHhhccHHHHHHHHhHhHhcCCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhcCCC--C
Q 007585 236 -YEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAAD--P 312 (597)
Q Consensus 236 -~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~~s~~~~d--~ 312 (597)
|-..+..+|.-+.+++.+.+.|++.+.||++.+||.+..|....++.+.....+.+....+..|+.|..-. ..+. +
T Consensus 733 erLdccgnLManikKdlelsecLQakreffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqeamgle-krYlfve 811 (1121)
T KOG4344|consen 733 ERLDCCGNLMANIKKDLELSECLQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQEAMGLE-KRYLFVE 811 (1121)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhh-hcccccc
Confidence 55678899999999999999999999999999999999999999998877667776666667777775311 0111 2
Q ss_pred CCCccceeeccccHHHH-Hhhh-----hc------------cccccCCCCCCCCCCCCCcceeEEEeeee--cCCcceee
Q 007585 313 CHEDLTCSVERSSLLKR-MATL-----KG------------VEIKTSSDSVDLEQPVSITGLETFSLSYK--VQWPLSIV 372 (597)
Q Consensus 313 ~~~~l~~~~~~~~l~~~-l~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~d~l~L~y~--v~wPL~li 372 (597)
+...+.+.+++.+-... |.++ .+ +.+...+. -+........++|++.|+|+ +|||..+|
T Consensus 812 dsnaLfirfEnvdnakkaLgsvltsklcavllphypqlahylhvklisq-insnsikvveaLdaieLdferpmamhqdii 890 (1121)
T KOG4344|consen 812 DSNALFIRFENVDNAKKALGSVLTSKLCAVLLPHYPQLAHYLHVKLISQ-INSNSIKVVEALDAIELDFERPMAMHQDII 890 (1121)
T ss_pred cccceeEEeecccchhhhcchhhhhhhhhhhcccchhhhhHHHHHHHhh-hcccchhhhhhhhheeecccCCcccchheE
Confidence 33444444442111000 1000 00 00110000 00112234688999999999 99999999
Q ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hh----cc---------------ccCCchhhHHHHHHHHHHHHH
Q 007585 373 ISRKALTKYQMVFRLLFHCKHVERQLCGAWQV-H--QG----AR---------------AFNASGTAISRSSLLCRSMLK 430 (597)
Q Consensus 373 lt~~~l~~Y~~iFrfLl~lk~~~~~L~~~w~~-~--~~----~~---------------~~~~~~~~~~~~~~lr~~m~~ 430 (597)
+|+.+|+.||++|+.|+++|++.|.|+++-.- . +. .| +....+..++|...+|.+++|
T Consensus 891 islacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRleilRfkLif 970 (1121)
T KOG4344|consen 891 ISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRLEILRFKLIF 970 (1121)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985431 1 10 01 011235678999999999999
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHHHHHHh
Q 007585 431 FINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHL--PDLLKKVERLKSLCLQYAAATQWLI 508 (597)
Q Consensus 431 Fv~~l~~Y~~~~VIe~~~~~f~~~l~~~~~~d~l~~~H~~fL~~i~~~c~L~~--~~l~~~l~~il~~~~~F~~~~~~~~ 508 (597)
||++|+.|++..|+++...+|+.++.+|+|+|+++..|.+||..|-.+|+|++ +.+..+|.+|+.+++.|+.-|+...
T Consensus 971 fiNnLHahIMeailhStgleFehqieEaKdldeLiiiHdehLatihdhClLrdefkafkeAidkifhLalmfadeWqtca 1050 (1121)
T KOG4344|consen 971 FINNLHAHIMEAILHSTGLEFEHQIEEAKDLDELIIIHDEHLATIHDHCLLRDEFKAFKEAIDKIFHLALMFADEWQTCA 1050 (1121)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999999999999999999999999999999997 5788999999999999999998765
Q ss_pred hcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc--ccccchHHHH
Q 007585 509 SSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSS--SQAEPYLTHL 586 (597)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~--~~~~~~~~~l 586 (597)
+- + ++.++ -|....+.++ . .+.-+.-...|.++..+++..++.. ....++...|
T Consensus 1051 sc-m--hagda----------------KOGdesIedd--e---iDdsetqrrsfencalflVaeiekavcRchfmhadiL 1106 (1121)
T KOG4344|consen 1051 SC-M--HAGDA----------------LCLDESIEDD--E---IDDSETQRRSFENCALFLVAEIEKAVCRCHFMHADIL 1106 (1121)
T ss_pred hh-h--ccccc----------------hhhhhhhhcc--c---ccchHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 31 1 21110 0000000000 0 0001122355888888888888763 2456777777
Q ss_pred HHHHhcc
Q 007585 587 AQLVLGV 593 (597)
Q Consensus 587 ~~ll~rl 593 (597)
+-+|..=
T Consensus 1107 alllhag 1113 (1121)
T KOG4344|consen 1107 ALLLHAG 1113 (1121)
T ss_pred HHHHhcC
Confidence 7776543
No 6
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.83 E-value=10 Score=41.07 Aligned_cols=141 Identities=11% Similarity=0.051 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcccCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCchHHHHHHhhhhHHHHHHHHHH
Q 007585 10 ESFVLTGQFVESRSQF----KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAV 83 (597)
Q Consensus 10 ~~~~~L~~fi~~~~~~----~~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~~~--~lsL~~L~~~~~~~~~~l~~L~~i 83 (597)
.....+|+.+..+.-+ ...+.-.-|+-+.+.+++...+.|...|.....+ ..++...-.+++...+.|+.+.++
T Consensus 428 admlelrhiidlHklffhGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldEl 507 (1121)
T KOG4344|consen 428 ADMLELRHIIDLHKLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDEL 507 (1121)
T ss_pred HHHHhhHHHHHHHHHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHH
Confidence 3344555555544322 2234556789999999999999998888765332 212221112234555666767777
Q ss_pred HHHhhcCCCcc------hhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCCceeeeC
Q 007585 84 IHKASANNFTG------SAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAED 154 (597)
Q Consensus 84 ~~~~~~~~~~g------~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~D~~~EFfI~~~ 154 (597)
+.... --+| ..++|.+++... .-....+.+.........+-|+.....|.+.....|..+||+|+-.
T Consensus 508 aedgh--LddGaaefiiarlknrlvkHrd--fqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFc 580 (1121)
T KOG4344|consen 508 AEDGH--LDDGAAEFIIARLKNRLVKHRD--FQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFC 580 (1121)
T ss_pred HHhcc--ccccHHHHHHHHHhccccccch--hhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHH
Confidence 65542 1223 345566665321 1122345566677777889999999999999999999999998743
No 7
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=28.11 E-value=97 Score=21.52 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=33.6
Q ss_pred HHHHHhhhcccccHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhcC
Q 007585 435 LLHYLTFEVLEPNWHVMHNRLQT-AKSIDEVIQHHDFFLDKCLRECLL 481 (597)
Q Consensus 435 l~~Y~~~~VIe~~~~~f~~~l~~-~~~~d~l~~~H~~fL~~i~~~c~L 481 (597)
+|--+-+..|+..+.++-+.++. ..-.|++.++.++||..+....++
T Consensus 4 fqlsmiqkaih~tydelgkei~~~g~~~d~i~kaqeeylsals~et~i 51 (58)
T PF13060_consen 4 FQLSMIQKAIHRTYDELGKEIDLQGVIADEIQKAQEEYLSALSHETLI 51 (58)
T ss_pred HHHHHHHHHHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHhhHHHHH
Confidence 34445556777778888777763 346799999999999987655543
No 8
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=25.58 E-value=37 Score=26.56 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=22.0
Q ss_pred CCcceeeechHH-HHHHHHHHHHHHHHH
Q 007585 366 QWPLSIVISRKA-LTKYQMVFRLLFHCK 392 (597)
Q Consensus 366 ~wPL~lilt~~~-l~~Y~~iFrfLl~lk 392 (597)
.|+.++.+.+.. +.-|..+|..|+.+=
T Consensus 48 ~WttsMf~~Q~ami~vYS~VFT~L~sIP 75 (85)
T PF10749_consen 48 EWTTSMFILQGAMILVYSIVFTILLSIP 75 (85)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999888755 468999999998764
No 9
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=22.41 E-value=89 Score=23.90 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=33.5
Q ss_pred HhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhH
Q 007585 439 LTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDL 486 (597)
Q Consensus 439 ~~~~VIe~~~~~f~~~l~~~~~~d~l~~~H~~fL~~i~~~c~L~~~~l 486 (597)
-...||...|.+|.+.+++..|..++...-. .=..|.+..||+..++
T Consensus 9 TCGkvig~~we~y~~~~~~g~~~~~~LD~LG-~~RYCCRRMllsHvdl 55 (71)
T PLN00032 9 TCGKVIGNKWDTYLDLLQADYSEGDALDALG-LVRYCCRRMLMTHVDL 55 (71)
T ss_pred CCCCCcHHHHHHHHHHHhcCCCHHHHHHHhC-chhhhhhhHHHHHHHH
Confidence 3457899999999999988888887665532 2244667777776444
No 10
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=21.53 E-value=3.1e+02 Score=21.47 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=28.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 007585 455 LQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQY 500 (597)
Q Consensus 455 l~~~~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~~~~F 500 (597)
+++.-++++|++.|.+++..+...+ ...+...++=++.+..-|
T Consensus 31 i~~~I~PEeIv~iH~~~v~~l~~~~---~~~v~~sld~LlEvm~~y 73 (77)
T PF08673_consen 31 IEKDISPEEIVEIHKSAVQELSPSL---PEDVLDSLDFLLEVMIGY 73 (77)
T ss_dssp HHTT--HHHHHHHHHHHHHHH-TTS----HHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHc
Confidence 3556799999999999999887665 455666666555555444
No 11
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=20.01 E-value=5e+02 Score=21.30 Aligned_cols=62 Identities=6% Similarity=-0.026 Sum_probs=38.1
Q ss_pred HhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCchHHHHHHh
Q 007585 9 CESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR--LGRLSIQGLWFYC 70 (597)
Q Consensus 9 g~~~~~L~~fi~~~~~~~~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~--~~~lsL~~L~~~~ 70 (597)
+..|..+..=.+.+-...+....+++|..|..-....-..|..+|..+. .+...+..+...+
T Consensus 16 a~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~l 79 (97)
T PF14966_consen 16 AQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIREL 79 (97)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 3455555554444433334466678888888888888888999998876 2333344444333
Done!