Query 007585
Match_columns 597
No_of_seqs 225 out of 840
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 05:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007585.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007585hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkta2 a.121.1.1 (A:83-205) H 31.0 1E+02 0.0073 23.2 8.7 65 75-142 5-69 (123)
2 d1kxpd3 a.126.1.1 (D:405-473) 22.1 32 0.0023 23.0 2.9 40 445-487 8-57 (69)
3 d2i10a2 a.121.1.1 (A:79-194) P 13.3 57 0.0042 24.1 3.0 52 90-144 22-73 (116)
4 d2hyja2 a.121.1.1 (A:83-200) P 12.4 2.4E+02 0.018 20.2 8.6 49 91-142 23-71 (118)
5 d2hyec2 a.118.17.1 (C:55-401) 12.0 4.4E+02 0.032 23.0 10.1 64 428-497 279-343 (347)
6 d1pb6a2 a.121.1.1 (A:86-211) H 10.8 78 0.0057 23.7 3.1 35 109-143 35-69 (126)
7 d1ldja2 a.118.17.1 (A:17-410) 9.9 3E+02 0.022 24.7 7.8 75 417-497 302-386 (394)
8 d2id3a2 a.121.1.1 (A:81-203) P 8.9 3.4E+02 0.025 19.7 6.8 50 91-143 23-72 (123)
9 d1w53a_ a.186.1.2 (A:) Phospho 8.7 3.1E+02 0.022 19.0 5.7 43 455-501 38-81 (84)
10 d1dvpa1 a.118.9.2 (A:1-145) Hr 5.6 5.5E+02 0.04 19.2 6.7 44 82-127 28-71 (145)
No 1
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=31.04 E-value=1e+02 Score=23.17 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhccee
Q 007585 75 GSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVI 142 (597)
Q Consensus 75 ~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l 142 (597)
..+.++..++..+. ..+-.+-...++....-.-||.+++.+...+......+...|.+++..|.+
T Consensus 5 ~~~~~~d~~~~~l~---~~~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~ 69 (123)
T d1rkta2 5 SISSYLDELTEGLR---DVADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEF 69 (123)
T ss_dssp HHHHHHHHHHHHTT---TGGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH---hcCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34455566666553 222234444455543346799999999999999888888888888888876
No 2
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.09 E-value=32 Score=22.97 Aligned_cols=40 Identities=23% Similarity=0.549 Sum_probs=27.9
Q ss_pred cccHHHHHHHhc----------cCCCHHHHHHHHHHHHHHHHHHhcCCChhHH
Q 007585 445 EPNWHVMHNRLQ----------TAKSIDEVIQHHDFFLDKCLRECLLHLPDLL 487 (597)
Q Consensus 445 e~~~~~f~~~l~----------~~~~~d~l~~~H~~fL~~i~~~c~L~~~~l~ 487 (597)
+..|.+|.++|. ....+.+|.+.|.+|-..| |-.++|+++
T Consensus 8 e~tFte~kkkL~e~lr~k~P~as~~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 8 ENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred hccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 345555666554 2357889999999998764 777788774
No 3
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=13.30 E-value=57 Score=24.09 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=41.1
Q ss_pred CCCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecC
Q 007585 90 NNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 144 (597)
Q Consensus 90 ~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~D 144 (597)
...+||-+.+...+. ...++.+++.+...+......+...+......|.+.+
T Consensus 22 ~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 22 GQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp ----CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456899888777663 3578999999999999999999999999999998854
No 4
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.37 E-value=2.4e+02 Score=20.19 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=40.6
Q ss_pred CCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhccee
Q 007585 91 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVI 142 (597)
Q Consensus 91 ~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l 142 (597)
...||-+.+..-+. ...++.+++.+...+.....-+.+.|...+..|.+
T Consensus 23 ~~~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i 71 (118)
T d2hyja2 23 LPGGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGEL 71 (118)
T ss_dssp STTSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34588888877765 46788999999999999988899999999888876
No 5
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.02 E-value=4.4e+02 Score=22.99 Aligned_cols=64 Identities=6% Similarity=0.099 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 007585 428 MLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 497 (597)
Q Consensus 428 m~~Fv~~l~~Y~~~~VIe~~~~~f~~~l-~~~~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~~ 497 (597)
+..+.+.+..|+...+-+. .... +...=+++|+..|+.| +.+...||-.++.+..++.+-+.-+
T Consensus 279 ~~~l~~~f~~~i~~~G~~~-----v~~~~~~~~~V~~ll~l~~k~-~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 279 QQALLQHWSEYIKTFGTAI-----VINPEKDKDMVQDLLDFKDKV-DHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HSCGGGTTTHHHHHHHHHHHH-HHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhCcccchHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455666667766554210 1111 1223488899999875 5677899999998888888876543
No 6
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=10.79 E-value=78 Score=23.74 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 007585 109 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 143 (597)
Q Consensus 109 ~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~ 143 (597)
+|.+.++..+...+........+.|..|+..|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 55566666677777777778888999999999774
No 7
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.95 E-value=3e+02 Score=24.74 Aligned_cols=75 Identities=9% Similarity=0.066 Sum_probs=47.5
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHhhhcccccHHHHHHHhccC------CCHHHHHHHHHHHHHHHHHHhcCCChhH
Q 007585 417 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTA------KSIDEVIQHHDFFLDKCLRECLLHLPDL 486 (597)
Q Consensus 417 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~~~~f~~~l~~~------~~~d~l~~~H~~fL~~i~~~c~L~~~~l 486 (597)
.+.+++.|..+ +-.+...+..|+...+.+ ..+..... .=+++|+..|+. .+.+...||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~-----~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA-----AIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----HHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-----HHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 45555554433 355667777777665422 22222211 126788888886 577788999999988
Q ss_pred HHHHHHHHHHH
Q 007585 487 LKKVERLKSLC 497 (597)
Q Consensus 487 ~~~l~~il~~~ 497 (597)
..++.+-+.-+
T Consensus 376 ~~~l~~af~~f 386 (394)
T d1ldja2 376 VAALDKACGRF 386 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888875543
No 8
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.89 E-value=3.4e+02 Score=19.68 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 007585 91 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 143 (597)
Q Consensus 91 ~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~ 143 (597)
...|+.++-.+.... ..+|.....+.+++...-.-+-.++...+-.|++.
T Consensus 23 ~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 23 DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344666666555433 45788888888888888888888999999999884
No 9
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=8.66 E-value=3.1e+02 Score=18.98 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=30.8
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Q 007585 455 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 501 (597)
Q Consensus 455 l~~~~~~d~l~~~H~~fL~~i~~~c~L~-~~~l~~~l~~il~~~~~F~ 501 (597)
|++--++++|+..|.+++..+ ..+ .+.+...++=++.+..-|.
T Consensus 38 iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHcC
Confidence 456679999999999988764 344 4667777777766665543
No 10
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.64 E-value=5.5e+02 Score=19.16 Aligned_cols=44 Identities=2% Similarity=0.027 Sum_probs=25.4
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Q 007585 82 AVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASN 127 (597)
Q Consensus 82 ~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~ 127 (597)
+||+.+..+...+...+..|.+++ .+++|.++-....|+..|..
T Consensus 28 ~icD~I~~~~~~~k~a~ral~krl--~~~n~~v~l~aL~LLd~~vk 71 (145)
T d1dvpa1 28 LICDEINQKDVTPKNAFAAIKKKM--NSPNPHSSCYSLLVLESIVK 71 (145)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHH--TCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHH
Confidence 445544422222335667777775 47888877666666655543
Done!