BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007586
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/577 (69%), Positives = 462/577 (80%), Gaps = 3/577 (0%)
Query: 12 SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRR 71
S + +D V E V+ Y+ DPKDRD+ SLVCRRW+++D+ TR H+T+ALCYT TP RL RR
Sbjct: 12 SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRR 71
Query: 72 FRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEV 131
F NL SLKLKGKPRAAMFNLIPE+WGGYVTPWV EI+ + LKS+HFRRMIV D DL+
Sbjct: 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131
Query: 132 LAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYN 191
LAK R +L LKLDKC GF+TDGLL + CR+++TL +EESS EKDG WLHELA +N
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191
Query: 192 TVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGG 251
T LE LNFYMT+ K++ +DLE IARNCRSL SVK+ D E+L+LV FF+ A LEEFCGG
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251
Query: 252 SFNHP---PEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFXXXXXXXXXXXXXXNTEDHC 308
S N PEKY + FPR +CRLGLSYM + M I+FPF TEDHC
Sbjct: 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311
Query: 309 LLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI 368
LIQ+CPNLE+LETRNVIGDRGLEVLA+ CK+LKRLRIERGADEQGMEDEEGLVSQRGLI
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371
Query: 369 ALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRAL 428
ALAQGC ELEY+A+YVSDITNESLE IG L+NLCDFRLVLLDREE+I DLPLDNGVR+L
Sbjct: 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431
Query: 429 LMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLR 488
L+GC KLRRF YLRQGGLTD GL Y+GQYS NVRWMLLG VGE+DEGL+ FSRGCPNL+
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491
Query: 489 KLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVS 548
KLEMRGC FSE A+AAAV +L SLRYLWVQGYRAS G+D+++M RP+WNIELIP R V
Sbjct: 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551
Query: 549 DTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPL 585
+ +Q G +EHPAHILAYYSLAGQRTD P TVR L
Sbjct: 552 EVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 288 bits (737), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 191/586 (32%), Positives = 298/586 (50%), Gaps = 26/586 (4%)
Query: 18 DTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLES 77
+ V E V +++ KDR+++SLVC+ WYE++ RR + I CY +PA + RRF + S
Sbjct: 11 EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRS 70
Query: 78 LKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRG 137
++LKGKP A FNL+P+ WGGYV PW+E +++S+ L+ I +RM+V D LE++AK+
Sbjct: 71 VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS-F 129
Query: 138 KNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETL 197
KN VL L C GFSTDGL ++ +CR L+ L L ES + + G WL T L +L
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189
Query: 198 NFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLD-LVNFFQIATALEEFCGGSFNHP 256
N +V+ LE + C +L S+K+N L+ L Q A LEE G +
Sbjct: 190 NISCL-ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248
Query: 257 --PEKYSAVAFPRSICR-----LGLSYMEQDHMWIIFPFXXXXXXXXXXXXXXNTEDHCL 309
P+ YS ++ S C+ G ++ ++ + D
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308
Query: 310 LIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIA 369
L+ +CP L+ L + I D GLEVLA +CK L+ LR+ E + + ++++GL++
Sbjct: 309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV--FPSEPFVMEPNVALTEQGLVS 366
Query: 370 LAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADL----PLDNGV 425
++ GC +LE + + +TN +L I N N+ FRL ++ E K D PLD G
Sbjct: 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII--EPKAPDYLTLEPLDIGF 424
Query: 426 RALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCP 485
A++ C + G LTD Y+G Y+ + + + G++D G+ GC
Sbjct: 425 GAIVEHC---KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481
Query: 486 NLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPR 545
+LRKLE+R C F + AL A +L ++R LW+ S +L P N+E+I R
Sbjct: 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541
Query: 546 LVSDTDQLGNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDTESLL 591
D+ P+ + Y ++AG R D P V +D +S +
Sbjct: 542 GAPDSRPESCPV-----ERVFIYRTVAGPRFDMPGFVWNMDQDSTM 582
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 400 RNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYS 459
+ L +FR+ +D + ++ +G+ L C KL+ L L L+D + + + S
Sbjct: 50 QTLDEFRVQHMDLSNSVIEVSTLHGI---LSQCSKLQ--NLSLEGLRLSDPIVNTLAKNS 104
Query: 460 LNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGC-SFSEYALAAAVMQLT-SLRYLWV 517
VR L GC G ++ L C L +L + C F+E + AV ++ ++ L +
Sbjct: 105 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 164
Query: 518 QGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIE-HPAHILAYYSLAGQRT 576
GYR + D+ +VR N+ + +SD+ L N E + L + SL+
Sbjct: 165 SGYRKNLQKSDLSTLVRRCPNLVHLD---LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 221
Query: 577 DFPETVRPL 585
PET+ L
Sbjct: 222 IIPETLLEL 230
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 107 IAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQL 166
I + + L+++ + + D + LAKN NL+ L L C GFS L + SC +L
Sbjct: 75 ILSQCSKLQNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCSGFSEFALQTLLSSCSRL 132
Query: 167 RTLFLEESSIFEKDGDWLHELALYNTVLE-TLNFYMTDLIKVNVEDLELIARNCRSLSSV 225
L L F + + + T+ + L+ Y +L K DL + R C +L +
Sbjct: 133 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---SDLSTLVRRCPNLVHL 189
Query: 226 KINDCELLD---LVNFFQI 241
++D +L FFQ+
Sbjct: 190 DLSDSVMLKNDCFQEFFQL 208
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 405 FRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLY-LRQGGLTDTGLGYVGQYSLNVR 463
FR+ +D + ++ +G+ L C KL+ L LR L+D + + + S VR
Sbjct: 93 FRVQHMDLSNSVIEVSTLHGI---LSQCSKLQNLSLEGLR---LSDPIVNTLAKNSNLVR 146
Query: 464 WMLLGCVGETDEGLIAFSRGCPNLRKLEMRGC-SFSEYALAAAVMQLT-SLRYLWVQGYR 521
L GC G ++ L C L +L + C F+E + AV ++ ++ L + GYR
Sbjct: 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206
Query: 522 ASKDGRDILRMVR 534
+ D+ +VR
Sbjct: 207 KNLQKSDLSTLVR 219
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 22/221 (9%)
Query: 37 ISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDW 96
+S VC+RWY L + T+ L + R + + + PR+ M + E +
Sbjct: 32 VSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRC-PRSFMDQPLAEHF 90
Query: 97 GGYVTPWVE------------EIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLK 144
+ ++ I + + L+++ + + D + LAKN NL+ L
Sbjct: 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN--SNLVRLN 148
Query: 145 LDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLE-TLNFYMTD 203
L C GFS L + SC +L L L F + + + T+ + L+ Y +
Sbjct: 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208
Query: 204 LIKVNVEDLELIARNCRSLSSVKINDCELLD---LVNFFQI 241
L K DL + R C +L + ++D +L FFQ+
Sbjct: 209 LQK---SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 228 NDCELLDLVNFFQIATALEE--FCGGSFNHPPEKY-SAVAFPRSICRLGLSYMEQDHMW 283
NDC LDLV FQIA EE G EK S V + + C L L+++EQ H+W
Sbjct: 120 NDCSALDLVTEFQIA---EEPLMTGKVAVLVSEKLRSMVTYLGAACDLSLAHIEQPHVW 175
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 228 NDCELLDLVNFFQIATALEE--FCGGSFNHPPEKY-SAVAFPRSICRLGLSYMEQDHMW 283
NDC LDLV FQIA EE G EK S V + + C L L+++EQ H+W
Sbjct: 118 NDCSALDLVTEFQIA---EEPLMTGKVAVLVSEKLRSMVTYLGAACDLSLAHIEQPHVW 173
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 228 NDCELLDLVNFFQIATALEE--FCGGSFNHPPEKY-SAVAFPRSICRLGLSYMEQDHMW 283
NDC LDLV FQIA EE G EK S V + + C L L+++EQ H+W
Sbjct: 120 NDCSALDLVTEFQIA---EEPLMTGKVAVLVSEKLRSMVTYLGAACDLSLAHIEQPHVW 175
>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU8|B Chain B, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU9|A Chain A, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AU9|B Chain B, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AUA|A Chain A, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
pdb|3AUA|B Chain B, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
Length = 488
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 311 IQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIAL 370
I++ N+ I + IG L ++ R C K+ + + + + L + + L
Sbjct: 74 IKKPINVAIFGSTGSIGTNALNII-RECNKI-----------ENVFNVKALYVNKSVNEL 121
Query: 371 AQGCLEL--EYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRAL 428
+ E EY+ I+ + E E + +N+ D++ ++L +E + ++ N + +
Sbjct: 122 YEQAREFLPEYLCIHDKSVYEELKELV----KNIKDYKPIILCGDEGMKEICSSNSIDKI 177
Query: 429 LMGCDKLRRFGLY 441
++G D + GLY
Sbjct: 178 VIGIDSFQ--GLY 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,789,626
Number of Sequences: 62578
Number of extensions: 672693
Number of successful extensions: 1652
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 15
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)