Query 007586
Match_columns 597
No_of_seqs 363 out of 3706
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 12:37:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 6.7E-33 1.5E-37 259.7 13.4 372 12-542 73-459 (483)
2 KOG4341 F-box protein containi 99.9 4.5E-24 9.7E-29 200.7 11.1 318 68-493 132-460 (483)
3 PLN00113 leucine-rich repeat r 99.9 2E-23 4.4E-28 238.3 17.3 202 374-597 355-558 (968)
4 PLN00113 leucine-rich repeat r 99.9 1.3E-23 2.7E-28 240.0 15.3 279 284-597 302-582 (968)
5 KOG2120 SCF ubiquitin ligase, 99.9 1.2E-23 2.5E-28 189.1 10.3 278 12-343 99-391 (419)
6 KOG4194 Membrane glycoprotein 99.8 7.7E-21 1.7E-25 185.8 -1.3 363 106-532 96-462 (873)
7 cd00116 LRR_RI Leucine-rich re 99.8 1.1E-16 2.3E-21 159.5 24.5 88 431-520 219-317 (319)
8 KOG4194 Membrane glycoprotein 99.8 1.4E-19 3.1E-24 177.0 2.9 373 67-520 96-477 (873)
9 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-16 5.6E-21 156.7 20.7 159 375-543 137-313 (319)
10 KOG1947 Leucine rich repeat pr 99.6 2.8E-15 6E-20 158.5 14.7 291 184-533 153-451 (482)
11 KOG1909 Ran GTPase-activating 99.6 2.4E-14 5.3E-19 132.7 14.5 281 104-509 22-324 (382)
12 KOG1909 Ran GTPase-activating 99.6 6.2E-14 1.3E-18 130.1 13.7 106 429-536 209-326 (382)
13 KOG2120 SCF ubiquitin ligase, 99.5 3.7E-14 8.1E-19 128.4 10.5 205 289-539 184-391 (419)
14 KOG0444 Cytoskeletal regulator 99.5 3.2E-16 6.8E-21 155.0 -6.9 340 111-521 31-373 (1255)
15 KOG1947 Leucine rich repeat pr 99.5 4E-13 8.6E-18 142.1 14.0 197 280-520 259-462 (482)
16 KOG0444 Cytoskeletal regulator 99.4 3.3E-14 7.1E-19 140.9 -3.3 138 104-254 47-184 (1255)
17 PLN03210 Resistant to P. syrin 99.3 3.9E-12 8.4E-17 146.2 10.5 345 107-523 553-907 (1153)
18 KOG0618 Serine/threonine phosp 99.3 1.2E-13 2.6E-18 143.2 -4.1 123 114-251 23-145 (1081)
19 KOG0618 Serine/threonine phosp 99.2 1.2E-12 2.7E-17 135.9 -1.2 81 220-303 241-323 (1081)
20 PLN03210 Resistant to P. syrin 99.2 3.9E-11 8.5E-16 138.0 9.2 285 112-442 611-902 (1153)
21 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.6E-15 111.6 3.1 214 287-523 118-339 (505)
22 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.3E-15 111.9 2.6 59 290-348 246-310 (505)
23 PRK15387 E3 ubiquitin-protein 99.0 3.9E-10 8.4E-15 120.8 6.4 64 460-530 402-465 (788)
24 PRK15387 E3 ubiquitin-protein 98.9 4.9E-10 1.1E-14 120.0 2.4 165 289-505 301-465 (788)
25 KOG0472 Leucine-rich repeat pr 98.8 3E-10 6.5E-15 107.6 -4.1 53 468-523 489-541 (565)
26 COG5238 RNA1 Ran GTPase-activa 98.7 1.7E-07 3.7E-12 84.6 12.1 217 289-534 29-266 (388)
27 COG5238 RNA1 Ran GTPase-activa 98.7 1.1E-06 2.3E-11 79.6 16.3 203 102-348 21-251 (388)
28 KOG0472 Leucine-rich repeat pr 98.6 8.7E-10 1.9E-14 104.5 -5.1 217 110-348 66-284 (565)
29 PF12937 F-box-like: F-box-lik 98.6 2.4E-08 5.3E-13 67.0 1.6 35 13-50 3-37 (47)
30 KOG3665 ZYG-1-like serine/thre 98.5 2.9E-07 6.4E-12 98.5 9.0 32 291-324 61-92 (699)
31 KOG3665 ZYG-1-like serine/thre 98.5 5E-07 1.1E-11 96.8 10.2 198 314-537 59-277 (699)
32 PRK15370 E3 ubiquitin-protein 98.5 7.1E-07 1.5E-11 96.6 10.9 130 376-531 305-436 (754)
33 KOG4237 Extracellular matrix p 98.5 1.4E-08 3E-13 96.4 -2.0 100 429-533 270-370 (498)
34 KOG4237 Extracellular matrix p 98.4 2.4E-08 5.3E-13 94.7 -3.2 101 286-399 270-371 (498)
35 PF14580 LRR_9: Leucine-rich r 98.3 1.7E-06 3.7E-11 75.9 6.5 59 163-231 41-99 (175)
36 PRK15370 E3 ubiquitin-protein 98.3 5E-06 1.1E-10 90.2 11.0 56 112-177 178-233 (754)
37 PF14580 LRR_9: Leucine-rich r 98.2 6.7E-07 1.5E-11 78.4 2.4 108 111-232 18-125 (175)
38 KOG2982 Uncharacterized conser 98.2 6.3E-07 1.4E-11 82.2 2.1 213 282-518 63-287 (418)
39 KOG4308 LRR-containing protein 98.2 1.2E-06 2.6E-11 89.9 4.4 226 289-533 203-455 (478)
40 smart00256 FBOX A Receptor for 98.2 1.1E-06 2.4E-11 57.1 2.8 36 14-52 1-36 (41)
41 KOG2982 Uncharacterized conser 98.1 2.8E-06 6E-11 78.1 4.7 107 168-324 49-155 (418)
42 PF00646 F-box: F-box domain; 98.1 8.7E-07 1.9E-11 59.9 0.1 35 13-50 5-39 (48)
43 KOG3864 Uncharacterized conser 98.0 1.1E-05 2.4E-10 70.2 4.9 104 435-543 103-212 (221)
44 KOG4308 LRR-containing protein 97.7 6.1E-05 1.3E-09 77.5 7.2 65 458-523 402-473 (478)
45 KOG1259 Nischarin, modulator o 97.7 3.8E-05 8.3E-10 70.8 4.7 35 374-409 373-408 (490)
46 KOG1259 Nischarin, modulator o 97.6 7E-05 1.5E-09 69.1 4.4 125 287-441 281-407 (490)
47 KOG1859 Leucine-rich repeat pr 97.6 2.2E-05 4.7E-10 80.9 1.0 56 462-521 234-290 (1096)
48 PF13855 LRR_8: Leucine rich r 97.5 3.7E-06 8E-11 60.2 -4.4 60 460-521 1-60 (61)
49 KOG1859 Leucine-rich repeat pr 97.4 2.9E-05 6.4E-10 80.0 -0.2 34 218-252 185-218 (1096)
50 KOG3864 Uncharacterized conser 97.4 0.00019 4.2E-09 62.6 4.6 83 114-202 103-186 (221)
51 KOG0617 Ras suppressor protein 97.2 7.8E-06 1.7E-10 68.9 -5.9 59 163-231 32-90 (264)
52 PF13855 LRR_8: Leucine rich r 97.2 0.00015 3.3E-09 51.7 1.0 60 164-231 1-60 (61)
53 KOG0617 Ras suppressor protein 97.1 6.1E-05 1.3E-09 63.6 -2.1 80 140-232 35-114 (264)
54 KOG4658 Apoptotic ATPase [Sign 96.9 0.00035 7.5E-09 77.4 1.7 125 164-324 523-651 (889)
55 KOG4658 Apoptotic ATPase [Sign 96.8 0.0011 2.3E-08 73.7 4.0 106 218-348 543-651 (889)
56 PF12799 LRR_4: Leucine Rich r 96.6 0.0011 2.5E-08 43.2 1.7 37 460-498 1-37 (44)
57 PLN03150 hypothetical protein; 96.5 0.0023 4.9E-08 69.2 4.5 92 435-531 420-511 (623)
58 PF12799 LRR_4: Leucine Rich r 96.5 0.0021 4.6E-08 41.9 2.5 38 485-524 1-38 (44)
59 PLN03150 hypothetical protein; 96.3 0.0045 9.8E-08 67.0 5.2 107 377-496 420-526 (623)
60 smart00367 LRR_CC Leucine-rich 96.1 0.0052 1.1E-07 34.9 2.4 21 485-505 2-23 (26)
61 smart00367 LRR_CC Leucine-rich 96.1 0.0047 1E-07 35.1 2.1 24 509-532 1-25 (26)
62 COG4886 Leucine-rich repeat (L 95.8 0.011 2.3E-07 60.7 4.8 100 140-252 118-218 (394)
63 KOG2123 Uncharacterized conser 95.6 0.0048 1E-07 56.8 1.0 33 165-203 20-52 (388)
64 KOG2739 Leucine-rich acidic nu 95.6 0.0015 3.3E-08 59.7 -2.2 64 163-231 64-127 (260)
65 KOG2123 Uncharacterized conser 95.5 0.0044 9.4E-08 57.1 0.6 36 288-323 61-96 (388)
66 PF13516 LRR_6: Leucine Rich r 95.5 0.0095 2.1E-07 33.0 1.8 21 510-530 2-22 (24)
67 PF13516 LRR_6: Leucine Rich r 95.3 0.015 3.3E-07 32.2 2.2 23 484-506 1-23 (24)
68 KOG2739 Leucine-rich acidic nu 95.2 0.004 8.6E-08 57.0 -0.7 44 453-496 84-127 (260)
69 KOG1644 U2-associated snRNP A' 94.8 0.019 4.2E-07 50.5 2.3 82 140-232 44-125 (233)
70 COG4886 Leucine-rich repeat (L 94.3 0.054 1.2E-06 55.5 4.8 172 111-325 115-287 (394)
71 KOG0531 Protein phosphatase 1, 94.1 0.0077 1.7E-07 62.0 -1.8 80 161-252 115-195 (414)
72 smart00368 LRR_RI Leucine rich 93.7 0.079 1.7E-06 30.6 2.7 22 511-532 3-24 (28)
73 smart00368 LRR_RI Leucine rich 93.4 0.1 2.3E-06 30.1 2.8 23 485-507 2-24 (28)
74 KOG4579 Leucine-rich repeat (L 93.1 0.073 1.6E-06 43.9 2.5 40 159-203 72-111 (177)
75 PLN03215 ascorbic acid mannose 92.9 0.065 1.4E-06 52.9 2.4 36 12-49 5-40 (373)
76 KOG0281 Beta-TrCP (transducin 92.7 0.079 1.7E-06 50.1 2.5 35 13-50 77-115 (499)
77 KOG1644 U2-associated snRNP A' 92.6 0.1 2.2E-06 46.1 2.9 88 430-521 61-151 (233)
78 PRK15386 type III secretion pr 92.4 0.32 6.9E-06 48.8 6.5 55 110-174 50-104 (426)
79 KOG4579 Leucine-rich repeat (L 91.1 0.11 2.3E-06 42.9 1.3 64 454-521 71-134 (177)
80 KOG2997 F-box protein FBX9 [Ge 90.0 0.16 3.6E-06 47.8 1.6 36 12-49 108-147 (366)
81 KOG3763 mRNA export factor TAP 88.6 0.91 2E-05 46.6 5.8 91 453-547 211-311 (585)
82 PRK15386 type III secretion pr 85.6 0.96 2.1E-05 45.5 4.1 33 136-175 51-83 (426)
83 PF13013 F-box-like_2: F-box-l 84.6 0.81 1.7E-05 36.5 2.5 33 11-46 22-56 (109)
84 PF13504 LRR_7: Leucine rich r 84.6 0.72 1.6E-05 23.0 1.4 11 486-496 2-12 (17)
85 KOG0532 Leucine-rich repeat (L 82.5 0.29 6.2E-06 50.3 -1.0 32 292-325 213-244 (722)
86 KOG0274 Cdc4 and related F-box 80.2 0.89 1.9E-05 48.0 1.6 37 13-52 110-146 (537)
87 KOG3763 mRNA export factor TAP 78.0 3.9 8.4E-05 42.2 5.2 40 108-148 214-254 (585)
88 KOG0531 Protein phosphatase 1, 74.4 1.3 2.9E-05 45.5 0.9 65 162-236 70-134 (414)
89 PF00560 LRR_1: Leucine Rich R 72.0 2 4.4E-05 23.0 0.8 13 511-523 1-13 (22)
90 KOG0532 Leucine-rich repeat (L 71.0 0.8 1.7E-05 47.2 -1.5 36 193-233 212-247 (722)
91 smart00370 LRR Leucine-rich re 51.1 15 0.00032 20.4 2.0 16 164-179 2-17 (26)
92 smart00369 LRR_TYP Leucine-ric 51.1 15 0.00032 20.4 2.0 16 164-179 2-17 (26)
93 smart00365 LRR_SD22 Leucine-ri 43.7 16 0.00034 20.6 1.2 14 510-523 2-15 (26)
94 KOG3926 F-box proteins [Amino 41.2 15 0.00033 34.1 1.5 37 11-49 202-238 (332)
95 KOG3735 Tropomodulin and leiom 37.0 93 0.002 30.4 6.0 85 424-509 189-279 (353)
96 KOG3735 Tropomodulin and leiom 33.2 94 0.002 30.3 5.4 23 112-134 198-221 (353)
97 PF09372 PRANC: PRANC domain; 27.5 36 0.00077 26.6 1.4 24 11-37 72-95 (97)
98 KOG4242 Predicted myosin-I-bin 22.4 50 0.0011 33.8 1.6 87 111-203 164-252 (553)
99 PF13306 LRR_5: Leucine rich r 20.4 9.2 0.0002 31.5 -3.5 10 431-440 33-42 (129)
100 smart00364 LRR_BAC Leucine-ric 20.4 56 0.0012 18.5 0.9 12 461-472 3-14 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=6.7e-33 Score=259.66 Aligned_cols=372 Identities=23% Similarity=0.323 Sum_probs=254.6
Q ss_pred CCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhh----cccccEEEEccccccChhhHHHhcCCceEEEeeCCCccc
Q 007586 12 SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELD----ATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAA 87 (597)
Q Consensus 12 ~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 87 (597)
-.||. |++.+||+|| +.+.+.+++++|+.|+..+ .|++.+++-...+ +
T Consensus 73 ~~LPp--El~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD-v------------------------ 124 (483)
T KOG4341|consen 73 RSLPP--ELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD-V------------------------ 124 (483)
T ss_pred ccCCH--HHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc-C------------------------
Confidence 34999 9999999999 9999999999999999886 2333332210000 0
Q ss_pred ccCCCCCCCCCCccHHHHHHHHhC-CCCcEEEecCC-ccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCC
Q 007586 88 MFNLIPEDWGGYVTPWVEEIAASF-NSLKSIHFRRM-IVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQ 165 (597)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~-~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 165 (597)
..+.+..+.++| .-|++|.++++ .+.+..+..+...+|+ +++|.+.+|..+++..+..+++.|++
T Consensus 125 ------------~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~Cpn-IehL~l~gc~~iTd~s~~sla~~C~~ 191 (483)
T KOG4341|consen 125 ------------DGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPN-IEHLALYGCKKITDSSLLSLARYCRK 191 (483)
T ss_pred ------------CCcceehHhhhhccccccccccccccCCcchhhHHhhhCCc-hhhhhhhcceeccHHHHHHHHHhcch
Confidence 012233333333 34566666666 5556666666666666 66666666666666555566666666
Q ss_pred CCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccc
Q 007586 166 LRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATAL 245 (597)
Q Consensus 166 L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L 245 (597)
|++|+|..|.. +++..+..+...|++|++|+++.|+.
T Consensus 192 l~~l~L~~c~~------------------------------iT~~~Lk~la~gC~kL~~lNlSwc~q------------- 228 (483)
T KOG4341|consen 192 LRHLNLHSCSS------------------------------ITDVSLKYLAEGCRKLKYLNLSWCPQ------------- 228 (483)
T ss_pred hhhhhhcccch------------------------------hHHHHHHHHHHhhhhHHHhhhccCch-------------
Confidence 66665555420 22222223333333333333333320
Q ss_pred hhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC
Q 007586 246 EEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV 325 (597)
Q Consensus 246 ~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~ 325 (597)
+.+.++..+.+++.+++.+...||
T Consensus 229 --------------------------------------------------------i~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 229 --------------------------------------------------------ISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred --------------------------------------------------------hhcCcchHHhccchhhhhhhhccc
Confidence 111122222222222222222221
Q ss_pred --cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeec-ccccCCHHHHHHHHHhccCc
Q 007586 326 --IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAI-YVSDITNESLECIGANLRNL 402 (597)
Q Consensus 326 --~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L 402 (597)
..++.+......++.+.++++.. |..+++.++..+...|..|+.|+. +++++++..+.++++++++|
T Consensus 253 ~e~~le~l~~~~~~~~~i~~lnl~~----------c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 253 LELELEALLKAAAYCLEILKLNLQH----------CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred ccccHHHHHHHhccChHhhccchhh----------hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 22344455555667777888888 889999999988888999999998 77889999999999999999
Q ss_pred ccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEcccc-CCCHHHHHHHH
Q 007586 403 CDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCV-GETDEGLIAFS 481 (597)
Q Consensus 403 ~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~ 481 (597)
+.|.+.. |..++ |.|+..+..+|+.|+.+++.. .+.++|..+..++.+|+.|+.|.++.+ .++|+++..+.
T Consensus 323 ~~l~l~~---c~~fs----d~~ft~l~rn~~~Le~l~~e~-~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 323 QVLELSG---CQQFS----DRGFTMLGRNCPHLERLDLEE-CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred EEEeccc---cchhh----hhhhhhhhcCChhhhhhcccc-cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 9999988 55677 899999999999999999966 367888889999999999999999655 47999877666
Q ss_pred h---CCCCCCEEEeecCC-CcHHHHHHHHHccccccEEEeeccc-cCHHHHHHHHhhCCCcEEEEc
Q 007586 482 R---GCPNLRKLEMRGCS-FSEYALAAAVMQLTSLRYLWVQGYR-ASKDGRDILRMVRPFWNIELI 542 (597)
Q Consensus 482 ~---~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~~~l~~~ 542 (597)
. +...|+.+.+++|+ +++..+..+. .|++|+++++.+|+ ++.++++.++..+|..++.-+
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 3 34789999999999 6777666665 59999999999999 999999999999998655443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.91 E-value=4.5e-24 Score=200.68 Aligned_cols=318 Identities=25% Similarity=0.308 Sum_probs=199.5
Q ss_pred HHHhcC-CceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCC-ccChHHHHHHHHhcccCccEEEe
Q 007586 68 LRRRFR-NLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRM-IVRDSDLEVLAKNRGKNLLVLKL 145 (597)
Q Consensus 68 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~~L~~L~L 145 (597)
+.++.. .+++|.++|+..+. ...+..+...||++++|.+.+| .++|..+..+++.|++ +++|++
T Consensus 132 ~~~Rcgg~lk~LSlrG~r~v~-------------~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~-l~~l~L 197 (483)
T KOG4341|consen 132 MISRCGGFLKELSLRGCRAVG-------------DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRK-LRHLNL 197 (483)
T ss_pred HhhhhccccccccccccccCC-------------cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcch-hhhhhh
Confidence 344443 58999999986543 3447778889999999999999 8999999999999999 999999
Q ss_pred cCCCCCChHHHHHHHHcCCCCCeEecCCCc-ccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcE
Q 007586 146 DKCCGFSTDGLLHVSRSCRQLRTLFLEESS-IFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSS 224 (597)
Q Consensus 146 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~ 224 (597)
..|..+++..++.++..|++|++|++++|. +.+.+ ++.+..++..++.+...+|.. ...+.+..+...++-
T Consensus 198 ~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g---v~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~--- 269 (483)
T KOG4341|consen 198 HSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG---VQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLE--- 269 (483)
T ss_pred cccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc---chHHhccchhhhhhhhccccc--ccHHHHHHHhccChH---
Confidence 999999999999999999999999999996 55444 233333343444443333221 333333333333333
Q ss_pred EEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCc-CC
Q 007586 225 VKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYAL-LN 303 (597)
Q Consensus 225 L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~ 303 (597)
+.++++..|. ++
T Consensus 270 -------------------------------------------------------------------i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 270 -------------------------------------------------------------------ILKLNLQHCNQLT 282 (483)
T ss_pred -------------------------------------------------------------------hhccchhhhcccc
Confidence 4444444444 55
Q ss_pred hHHHHHHHhcCCCCCEEEcCC--CcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceee
Q 007586 304 TEDHCLLIQRCPNLEILETRN--VIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIA 381 (597)
Q Consensus 304 ~~~~~~l~~~~~~L~~L~l~~--~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~ 381 (597)
|+++..+..++..|+.|..++ ..++..+..+.+.+++|+.|.+++ |..+++.++..+..+++.|+.++
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~----------c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSG----------CQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccc----------cchhhhhhhhhhhcCChhhhhhc
Confidence 555555555555555555554 244555555555666666666666 55666666666666666666666
Q ss_pred c-ccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHh---CCcCCcEEEeeccCCCCCHHHHHHHHh
Q 007586 382 I-YVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLM---GCDKLRRFGLYLRQGGLTDTGLGYVGQ 457 (597)
Q Consensus 382 l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~l~~~~~~~l~~ 457 (597)
+ .+-.+++..+..++.+|+.|+.|.+++ |..|+ |.|+..+.. +...|+.+.+.+ +..+++..+..+.
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslsh---ce~it----D~gi~~l~~~~c~~~~l~~lEL~n-~p~i~d~~Le~l~- 423 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSH---CELIT----DEGIRHLSSSSCSLEGLEVLELDN-CPLITDATLEHLS- 423 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhh---hhhhh----hhhhhhhhhccccccccceeeecC-CCCchHHHHHHHh-
Confidence 5 333444444556666666666666655 34455 555544332 233466666643 2355666666665
Q ss_pred cCCCCCEEEc-cccCCCHHHHHHHHhCCCCCCEEEee
Q 007586 458 YSLNVRWMLL-GCVGETDEGLIAFSRGCPNLRKLEMR 493 (597)
Q Consensus 458 ~~~~L~~L~l-~~~~i~~~~~~~l~~~~~~L~~L~l~ 493 (597)
.+++|+.+++ .+..++.+++..+..++|+++...+-
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 5666666666 34446666666666666666665544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2e-23 Score=238.31 Aligned_cols=202 Identities=14% Similarity=0.025 Sum_probs=101.6
Q ss_pred CcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHH
Q 007586 374 CLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLG 453 (597)
Q Consensus 374 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~ 453 (597)
+++|+.|+++.|.++......+.. +++|+.|++.+.. +.. .+...+..+++|+.|++.++ .++.....
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~----l~~-----~~p~~~~~~~~L~~L~L~~n--~l~~~~p~ 422 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNS----LEG-----EIPKSLGACRSLRRVRLQDN--SFSGELPS 422 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCE----ecc-----cCCHHHhCCCCCCEEECcCC--EeeeECCh
Confidence 445555555555444333333333 4455555544311 110 01122346677777777421 34433333
Q ss_pred HHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHHHHHHHHhh
Q 007586 454 YVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMV 533 (597)
Q Consensus 454 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 533 (597)
.+. .++.|+.|++++|.+++.....+. .+++|+.|++++|.++......+ ..++|+.|++++|+++......+. .
T Consensus 423 ~~~-~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~-~ 497 (968)
T PLN00113 423 EFT-KLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLG-S 497 (968)
T ss_pred hHh-cCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhh-h
Confidence 333 677778888877777654333332 67788888888887543222211 246788888888876655444433 2
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCcccccccceeEEEeeccCCCC--CCCCcccccCCCCccccccCC
Q 007586 534 RPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRT--DFPETVRPLDTESLLSVQSCT 597 (597)
Q Consensus 534 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~p~~~~~~~~~~~~~~~~~~ 597 (597)
.+.+..-.+..+...+..+.....+.. +.+..+.+... .+|.++..+..+..|+|++|.
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~-----L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKK-----LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccC-----CCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 333322222222221111111122211 22333333322 367788888888888888874
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.3e-23 Score=239.98 Aligned_cols=279 Identities=13% Similarity=0.038 Sum_probs=164.4
Q ss_pred HhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccC
Q 007586 284 IIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVS 363 (597)
Q Consensus 284 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 363 (597)
..+..+++|++|++++|.+.+.....+ ..+++|+.|++.++.....++.....+++|+.|++++ +.++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~-----------n~l~ 369 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST-----------NNLT 369 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC-----------CeeE
Confidence 333445556666665555443332222 2556666666655432222333334456666666665 2232
Q ss_pred HHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeecc
Q 007586 364 QRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLR 443 (597)
Q Consensus 364 ~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~ 443 (597)
......+ ..+++|+.|+++.|.+.......+.. +++|+.|++.++. ++.. +...+..+++|+.|++++
T Consensus 370 ~~~p~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~-~~~L~~L~L~~n~----l~~~-----~p~~~~~l~~L~~L~Ls~- 437 (968)
T PLN00113 370 GEIPEGL-CSSGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNS----FSGE-----LPSEFTKLPLVYFLDISN- 437 (968)
T ss_pred eeCChhH-hCcCCCCEEECcCCEecccCCHHHhC-CCCCCEEECcCCE----eeeE-----CChhHhcCCCCCEEECcC-
Confidence 2111112 34678999999988887766666766 8999999998742 2210 111245788999999953
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 444 QGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 444 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
+.+++.....+. .+++|+.|++++|.+.......+ +.++|+.|++++|.+++.....+. .+++|+.|++++|+++
T Consensus 438 -N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 438 -NNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLS 512 (968)
T ss_pred -CcccCccChhhc-cCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhh-hhhccCEEECcCCcce
Confidence 244443333333 68999999999988765433322 458999999999998765444443 4899999999999876
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCcccccccceeEEEeeccCCCC--CCCCcccccCCCCccccccCC
Q 007586 524 KDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQRT--DFPETVRPLDTESLLSVQSCT 597 (597)
Q Consensus 524 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~p~~~~~~~~~~~~~~~~~~ 597 (597)
......+. .++.+..-.+..+...+..+........ +..+.+.+.+. .+|+.+..+..+..|++++|.
T Consensus 513 ~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-----L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 513 GEIPDELS-SCKKLVSLDLSHNQLSGQIPASFSEMPV-----LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred eeCChHHc-CccCCCEEECCCCcccccCChhHhCccc-----CCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 65444443 3444444444433332222211111111 22333333333 478888888888999999884
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.2e-23 Score=189.07 Aligned_cols=278 Identities=23% Similarity=0.318 Sum_probs=196.3
Q ss_pred CCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcccccEEEEccc-cccChhhHHHhcC-CceEEEee----CCCc
Q 007586 12 SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALC-YTTTPARLRRRFR-NLESLKLK----GKPR 85 (597)
Q Consensus 12 ~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~-~L~~L~l~----~~~~ 85 (597)
+.||| ||+.-||+.| ..+++.+++.|||||+++....+.|...+.- ....|..+.+-.. .+..+.+. ..|+
T Consensus 99 ~slpD--Eill~IFs~L-~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~pr 175 (419)
T KOG2120|consen 99 DSLPD--EILLGIFSCL-CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPR 175 (419)
T ss_pred ccCCH--HHHHHHHHhc-cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCch
Confidence 56999 9999999999 9999999999999999998777766655321 2233332221111 12222222 1111
Q ss_pred ccccCCC------CCCC--CCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHH
Q 007586 86 AAMFNLI------PEDW--GGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLL 157 (597)
Q Consensus 86 ~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~ 157 (597)
++..... .-+. .......+..+...|..|+.|.+.+..+.|.....+++.- +|+.|+++.|.+++..++.
T Consensus 176 lae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~--~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS--NLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccc--cceeeccccccccchhHHH
Confidence 1110000 0000 0123455667788899999999999999999888888766 6999999999999999999
Q ss_pred HHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHH
Q 007586 158 HVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVN 237 (597)
Q Consensus 158 ~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~ 237 (597)
.+...|+.|.+|+|++|....+.+. ..+....++|+.|+++++... +...++..+.++||+|.+|+|++|..
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrn-l~~sh~~tL~~rcp~l~~LDLSD~v~----- 325 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRN-LQKSHLSTLVRRCPNLVHLDLSDSVM----- 325 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhh-hhhhHHHHHHHhCCceeeeccccccc-----
Confidence 9999999999999999975544331 223445679999999987554 66678888999999999999998642
Q ss_pred HHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCc-CChHHHHHHHhcCCC
Q 007586 238 FFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYAL-LNTEDHCLLIQRCPN 316 (597)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~l~~~~~~ 316 (597)
+.+ .....+..++.|++|.++.|+ +..+.+..+. ..|.
T Consensus 326 ---------------------------------------l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~ps 364 (419)
T KOG2120|consen 326 ---------------------------------------LKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPS 364 (419)
T ss_pred ---------------------------------------cCc-hHHHHHHhcchheeeehhhhcCCChHHeeeec-cCcc
Confidence 111 222344567889999999999 5555444433 7889
Q ss_pred CCEEEcCCCcChHHHHHHHHhCccCCe
Q 007586 317 LEILETRNVIGDRGLEVLARSCKKLKR 343 (597)
Q Consensus 317 L~~L~l~~~~~~~~~~~l~~~~~~L~~ 343 (597)
|.+|++.++..|..++.+...+++|+.
T Consensus 365 l~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 365 LVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred eEEEEeccccCchHHHHHHHhCccccc
Confidence 999999999999888888888887664
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=7.7e-21 Score=185.77 Aligned_cols=363 Identities=15% Similarity=0.107 Sum_probs=182.8
Q ss_pred HHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHH
Q 007586 106 EIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLH 185 (597)
Q Consensus 106 ~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~ 185 (597)
.++..+|+|+++.+..|.++. +..++....+ |+.|.|..+ .++...-..+ ...+.|+.|||+.|.++.... .
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sgh-l~~L~L~~N-~I~sv~se~L-~~l~alrslDLSrN~is~i~~---~ 167 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTR--IPRFGHESGH-LEKLDLRHN-LISSVTSEEL-SALPALRSLDLSRNLISEIPK---P 167 (873)
T ss_pred HHHhcCCcceeeeeccchhhh--cccccccccc-eeEEeeecc-ccccccHHHH-HhHhhhhhhhhhhchhhcccC---C
Confidence 344466777777776664432 2333333444 777777655 2222111111 224667777777776543321 1
Q ss_pred HHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHH-HHHhhcccchhccCCCCCCCcchhcccc
Q 007586 186 ELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLV-NFFQIATALEEFCGGSFNHPPEKYSAVA 264 (597)
Q Consensus 186 ~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 264 (597)
.++ .-.++++|+++.+.+..+....+. .+.+|..|+|+.|.+..++ ..+...++|+.|++.......-.
T Consensus 168 sfp-~~~ni~~L~La~N~It~l~~~~F~----~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive----- 237 (873)
T KOG4194|consen 168 SFP-AKVNIKKLNLASNRITTLETGHFD----SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE----- 237 (873)
T ss_pred CCC-CCCCceEEeecccccccccccccc----ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-----
Confidence 111 234677777777775544444442 3446777777777766554 34445777777766543322100
Q ss_pred ChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeE
Q 007586 265 FPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRL 344 (597)
Q Consensus 265 ~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L 344 (597)
-.-+..+++|+.|.|..|.|....=..+. .|.++++|++..+.-...-+...-.++.|+.|
T Consensus 238 ------------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 238 ------------------GLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred ------------------hhhhcCchhhhhhhhhhcCcccccCccee-eecccceeecccchhhhhhcccccccchhhhh
Confidence 00122344444444444442211111111 34455555554321111111112234556666
Q ss_pred EeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHH
Q 007586 345 RIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNG 424 (597)
Q Consensus 345 ~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~ 424 (597)
+++. +.+.......+ ..+++|+.|+|+.|+++.-....+.. +..|++|+++.- .|+ .-
T Consensus 299 ~lS~-----------NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~-L~~Le~LnLs~N----si~-----~l 356 (873)
T KOG4194|consen 299 DLSY-----------NAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRV-LSQLEELNLSHN----SID-----HL 356 (873)
T ss_pred ccch-----------hhhheeecchh-hhcccceeEeccccccccCChhHHHH-HHHhhhhccccc----chH-----HH
Confidence 6664 33333222223 24667777777776665544445544 566777776651 121 11
Q ss_pred HHHHHhCCcCCcEEEeecc--CCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHH
Q 007586 425 VRALLMGCDKLRRFGLYLR--QGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYAL 502 (597)
Q Consensus 425 ~~~l~~~~~~L~~L~l~~~--~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 502 (597)
.+..+..+++|++|+|..+ ++.|.|... .+. .++.|+.|.+.+|++....-.++. ++++|++|++.+|.|.....
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~-~f~-gl~~LrkL~l~gNqlk~I~krAfs-gl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAV-AFN-GLPSLRKLRLTGNQLKSIPKRAFS-GLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchh-hhc-cchhhhheeecCceeeecchhhhc-cCcccceecCCCCcceeecc
Confidence 1122334566777777421 113445322 222 578888888877776554444444 78888888888888644444
Q ss_pred HHHHHccccccEEEeeccc-cCHHHHHHHHh
Q 007586 503 AAAVMQLTSLRYLWVQGYR-ASKDGRDILRM 532 (597)
Q Consensus 503 ~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~ 532 (597)
.+|.. + .|++|.+..-. +-+.-++|+.+
T Consensus 434 nAFe~-m-~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 434 NAFEP-M-ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred ccccc-c-hhhhhhhcccceEEeccHHHHHH
Confidence 44433 3 67777665544 44444444443
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.1e-16 Score=159.46 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=39.2
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcC----CCCCEEEccccCCCHHHHHHHHh---CCCCCCEEEeecCCCcHHHHH
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYS----LNVRWMLLGCVGETDEGLIAFSR---GCPNLRKLEMRGCSFSEYALA 503 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~ 503 (597)
.+++|++|++++ ..+++.++..++..+ +.|++|++++|.+++.+...+.. .+++|+.+++++|.+++.+..
T Consensus 219 ~~~~L~~L~ls~--n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 219 SLKSLEVLNLGD--NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred ccCCCCEEecCC--CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 344555555521 144544444443322 45555555555554443332222 234555555555555544433
Q ss_pred HHHH---cc-ccccEEEeecc
Q 007586 504 AAVM---QL-TSLRYLWVQGY 520 (597)
Q Consensus 504 ~l~~---~~-~~L~~L~l~~~ 520 (597)
.++. .. +.|+.+++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHhhcCCchhhcccCCC
Confidence 3331 11 34555555444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-19 Score=176.98 Aligned_cols=373 Identities=17% Similarity=0.148 Sum_probs=241.4
Q ss_pred hHHHhcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEec
Q 007586 67 RLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLD 146 (597)
Q Consensus 67 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~ 146 (597)
..+...|+|+++.+..+. ..- ++.+.....+|++|+|.+|.|+...-+.+ ...|. |++|+|+
T Consensus 96 ~~f~nl~nLq~v~l~~N~----Lt~------------IP~f~~~sghl~~L~L~~N~I~sv~se~L-~~l~a-lrslDLS 157 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNE----LTR------------IPRFGHESGHLEKLDLRHNLISSVTSEEL-SALPA-LRSLDLS 157 (873)
T ss_pred HHHhcCCcceeeeeccch----hhh------------cccccccccceeEEeeeccccccccHHHH-HhHhh-hhhhhhh
Confidence 456788899999888441 111 22222244789999999996665554555 34566 9999999
Q ss_pred CCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEE
Q 007586 147 KCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVK 226 (597)
Q Consensus 147 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~ 226 (597)
.+ .++......+ ..-.++++|+|++|.|++.+...+..+ .+|..|.++.++++.++... ++++|+|+.|+
T Consensus 158 rN-~is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNrittLp~r~----Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 158 RN-LISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRITTLPQRS----FKRLPKLESLD 227 (873)
T ss_pred hc-hhhcccCCCC-CCCCCceEEeecccccccccccccccc----chheeeecccCcccccCHHH----hhhcchhhhhh
Confidence 86 2222111111 123679999999999998775544433 48999999999876555443 35789999999
Q ss_pred ecCCCcccHH-HHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChH
Q 007586 227 INDCELLDLV-NFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTE 305 (597)
Q Consensus 227 L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~ 305 (597)
|..|.+.-.. ..++..++|+.+.+... ++....+. .+..+.++++|+|..|.+...
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN-------------------~I~kL~DG----~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRN-------------------DISKLDDG----AFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhc-------------------CcccccCc----ceeeecccceeecccchhhhh
Confidence 9998765442 23344555555544322 22222221 345678899999999997765
Q ss_pred HHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeeccc
Q 007586 306 DHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYV 384 (597)
Q Consensus 306 ~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 384 (597)
.-..+. ++..|+.|+++.+ +.......+ ..+++|++|+|+. +.++.-.-..+ ..+..|+.|.|+.
T Consensus 285 n~g~lf-gLt~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~-----------N~i~~l~~~sf-~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 285 NEGWLF-GLTSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSS-----------NRITRLDEGSF-RVLSQLEELNLSH 350 (873)
T ss_pred hccccc-ccchhhhhccchhhhheeecchh-hhcccceeEeccc-----------cccccCChhHH-HHHHHhhhhcccc
Confidence 555555 8899999999964 222222222 4589999999997 55554332232 2356799999999
Q ss_pred ccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCC-C---CCHHHHHHHHhcCC
Q 007586 385 SDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQG-G---LTDTGLGYVGQYSL 460 (597)
Q Consensus 385 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~---l~~~~~~~l~~~~~ 460 (597)
|.++.-.-.++.. +.+|+.|++..-.....|. | ....+..+++|++|++ .| . |+...+. .++
T Consensus 351 Nsi~~l~e~af~~-lssL~~LdLr~N~ls~~IE----D--aa~~f~gl~~LrkL~l---~gNqlk~I~krAfs----gl~ 416 (873)
T KOG4194|consen 351 NSIDHLAEGAFVG-LSSLHKLDLRSNELSWCIE----D--AAVAFNGLPSLRKLRL---TGNQLKSIPKRAFS----GLE 416 (873)
T ss_pred cchHHHHhhHHHH-hhhhhhhcCcCCeEEEEEe----c--chhhhccchhhhheee---cCceeeecchhhhc----cCc
Confidence 9986554444444 7899999987632222232 4 2234567999999999 55 2 3433332 789
Q ss_pred CCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC-CcHHHHHHHHHcc--ccccEEEeecc
Q 007586 461 NVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS-FSEYALAAAVMQL--TSLRYLWVQGY 520 (597)
Q Consensus 461 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~--~~L~~L~l~~~ 520 (597)
.|++|+|+.|.|......++. .+ .|++|.+..-. +-|..+..+.+-+ .+++.-....|
T Consensus 417 ~LE~LdL~~NaiaSIq~nAFe-~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~C 477 (873)
T KOG4194|consen 417 ALEHLDLGDNAIASIQPNAFE-PM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKC 477 (873)
T ss_pred ccceecCCCCcceeecccccc-cc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeec
Confidence 999999999988666655554 44 89999888776 5666666555422 33444444444
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2.6e-16 Score=156.69 Aligned_cols=159 Identities=22% Similarity=0.217 Sum_probs=104.5
Q ss_pred cccceeecccccCCHHHHHHHH---HhccCcccceecccCccccccCCchhHHHHHHH---hCCcCCcEEEeeccCCCCC
Q 007586 375 LELEYIAIYVSDITNESLECIG---ANLRNLCDFRLVLLDREEKIADLPLDNGVRALL---MGCDKLRRFGLYLRQGGLT 448 (597)
Q Consensus 375 ~~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~l~ 448 (597)
++|+.|+++.+.++..+...+. ..+++|++|+++++ .++ +.++..+. ..+++|++|++++ ..++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n----~l~----~~~~~~l~~~l~~~~~L~~L~L~~--n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN----GIG----DAGIRALAEGLKANCNLEVLDLNN--NGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC----CCc----hHHHHHHHHHHHhCCCCCEEeccC--CccC
Confidence 4555555555555433322222 12345555555542 222 23333332 2345788888843 2567
Q ss_pred HHHHHHHHh---cCCCCCEEEccccCCCHHHHHHHHhCC----CCCCEEEeecCCCcHHHHHHHHH---ccccccEEEee
Q 007586 449 DTGLGYVGQ---YSLNVRWMLLGCVGETDEGLIAFSRGC----PNLRKLEMRGCSFSEYALAAAVM---QLTSLRYLWVQ 518 (597)
Q Consensus 449 ~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~ 518 (597)
+.++..+.. .+++|+.|++++|.+++.++..+...+ +.|++|++++|.+++.+...+.. .+++|++++++
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 666655433 678999999999999998888777654 79999999999998777766653 45789999999
Q ss_pred ccccCHHHHHHHHhhCCC--cEEEEcC
Q 007586 519 GYRASKDGRDILRMVRPF--WNIELIP 543 (597)
Q Consensus 519 ~~~i~~~~~~~l~~~~~~--~~l~~~~ 543 (597)
+|.+++++.+.+++.... .+++.++
T Consensus 287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 287 GNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred CCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 999999988888766543 2555554
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.63 E-value=2.8e-15 Score=158.51 Aligned_cols=291 Identities=24% Similarity=0.294 Sum_probs=163.0
Q ss_pred HHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCccc---HHHHHhhcccchhccCCCCCCCcchh
Q 007586 184 LHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLD---LVNFFQIATALEEFCGGSFNHPPEKY 260 (597)
Q Consensus 184 l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (597)
...+......++.++....... +....+..+...++.|+.|.+.+|.... +..+...+++|++|.++....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----- 226 (482)
T KOG1947|consen 153 LLELSRGLANLESLSLSCCGSL-LLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCL----- 226 (482)
T ss_pred hHHHHHHHHHHheeeeeccccc-ccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccc-----
Confidence 3444445556677776655433 5556666677778888888888875322 445555566666666543100
Q ss_pred ccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCc-CChHHHHHHHhcCCCCCEEEcCCC--cChHHHHHHHHh
Q 007586 261 SAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYAL-LNTEDHCLLIQRCPNLEILETRNV--IGDRGLEVLARS 337 (597)
Q Consensus 261 ~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~ 337 (597)
...........+...|++|+.|+++++. +++.++..++..|++|+.|.+.++ +++.++..++..
T Consensus 227 -------------~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 227 -------------LITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred -------------ccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 0011111122244455666666666666 666666666655666666665443 355666666666
Q ss_pred CccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCcccccc
Q 007586 338 CKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIA 417 (597)
Q Consensus 338 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~ 417 (597)
|+.|++|+++. |..+++.++..+..+|++|+.|.+....- |+.++.+.+..+. ...
T Consensus 294 ~~~L~~L~l~~----------c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-----------c~~l~~~~l~~~~---~~~ 349 (482)
T KOG1947|consen 294 CPSLRELDLSG----------CHGLTDSGLEALLKNCPNLRELKLLSLNG-----------CPSLTDLSLSGLL---TLT 349 (482)
T ss_pred cCcccEEeeec----------CccchHHHHHHHHHhCcchhhhhhhhcCC-----------CccHHHHHHHHhh---ccC
Confidence 66666666665 55555555555555555555544311100 2222232222211 000
Q ss_pred CCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC-
Q 007586 418 DLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS- 496 (597)
Q Consensus 418 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~- 496 (597)
. |......+..|++|+.+.+..+ + +++.+...+...||.| + .++......+..++.|+++.|.
T Consensus 350 ~---d~~~~~~~~~~~~l~~~~l~~~-~-~~~~~~~~~l~gc~~l----------~-~~l~~~~~~~~~l~~L~l~~~~~ 413 (482)
T KOG1947|consen 350 S---DDLAELILRSCPKLTDLSLSYC-G-ISDLGLELSLRGCPNL----------T-ESLELRLCRSDSLRVLNLSDCRL 413 (482)
T ss_pred c---hhHhHHHHhcCCCcchhhhhhh-h-ccCcchHHHhcCCccc----------c-hHHHHHhccCCccceEecccCcc
Confidence 0 2334445566777777777442 2 4444443444344444 3 3344444344458999999998
Q ss_pred CcHHHHHHHHHccccccEEEeeccc-cCHHHHHHHHhh
Q 007586 497 FSEYALAAAVMQLTSLRYLWVQGYR-ASKDGRDILRMV 533 (597)
Q Consensus 497 i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~ 533 (597)
.++..+......+.+++.+++.+|. ++..+...+...
T Consensus 414 ~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 414 VTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred ccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 7888888777668888999999998 887776665543
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.59 E-value=2.4e-14 Score=132.74 Aligned_cols=281 Identities=18% Similarity=0.200 Sum_probs=150.4
Q ss_pred HHHHHHhCCCCcEEEecCCccChHHHHHHHHhccc--CccEEEecCC--CCCChHH------HHHHHHcCCCCCeEecCC
Q 007586 104 VEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGK--NLLVLKLDKC--CGFSTDG------LLHVSRSCRQLRTLFLEE 173 (597)
Q Consensus 104 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~--~L~~L~L~~~--~~~~~~~------l~~l~~~~~~L~~L~L~~ 173 (597)
+.........+++|+|+++.+..+....++....+ .|+.-+++.- ....+.. +......||+|++|+|++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 44444466789999999999888888877765533 1444444432 0111110 112223456666666666
Q ss_pred CcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCC
Q 007586 174 SSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSF 253 (597)
Q Consensus 174 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (597)
|-+...+.+-+.. +.++|..|++|.|.+|.+....+ -+....|.++...
T Consensus 102 NA~G~~g~~~l~~----------------------------ll~s~~~L~eL~L~N~Glg~~ag-~~l~~al~~l~~~-- 150 (382)
T KOG1909|consen 102 NAFGPKGIRGLEE----------------------------LLSSCTDLEELYLNNCGLGPEAG-GRLGRALFELAVN-- 150 (382)
T ss_pred cccCccchHHHHH----------------------------HHHhccCHHHHhhhcCCCChhHH-HHHHHHHHHHHHH--
Confidence 6665555444444 44445555555555544321110 0001111121100
Q ss_pred CCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHH
Q 007586 254 NHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEV 333 (597)
Q Consensus 254 ~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 333 (597)
.-...-++|+.+....|.+.+.+... +..
T Consensus 151 ------------------------------kk~~~~~~Lrv~i~~rNrlen~ga~~---------------------~A~ 179 (382)
T KOG1909|consen 151 ------------------------------KKAASKPKLRVFICGRNRLENGGATA---------------------LAE 179 (382)
T ss_pred ------------------------------hccCCCcceEEEEeeccccccccHHH---------------------HHH
Confidence 01123456777777777755544333 233
Q ss_pred HHHhCccCCeEEeecCCCCCCccccccccCHHHHH---HHHHcCcccceeecccccCCHHHHHHHHHhccCcccceeccc
Q 007586 334 LARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI---ALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLL 410 (597)
Q Consensus 334 l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~---~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 410 (597)
..+.++.|+++++.. +.+...++. .-+..|++|+.|||..|.++..+-..++..++.+
T Consensus 180 ~~~~~~~leevr~~q-----------N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-------- 240 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQ-----------NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-------- 240 (382)
T ss_pred HHHhccccceEEEec-----------ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc--------
Confidence 445667788888886 445444332 2334688888888888888877777777644332
Q ss_pred CccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHH----HHhcCCCCCEEEccccCCCHHHHHHHHh---C
Q 007586 411 DREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGY----VGQYSLNVRWMLLGCVGETDEGLIAFSR---G 483 (597)
Q Consensus 411 ~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~----l~~~~~~L~~L~l~~~~i~~~~~~~l~~---~ 483 (597)
++|+.|++.+| .+.+.+..+ +....|.|+.|.+.+|.|+-.+...+.. .
T Consensus 241 ----------------------~~L~El~l~dc--ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 241 ----------------------PHLRELNLGDC--LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred ----------------------chheeeccccc--ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 23555555333 333333333 3334566777777777665554433331 2
Q ss_pred CCCCCEEEeecCCC--cHHHHHHHHHcc
Q 007586 484 CPNLRKLEMRGCSF--SEYALAAAVMQL 509 (597)
Q Consensus 484 ~~~L~~L~l~~~~i--~~~~~~~l~~~~ 509 (597)
.|.|+.|+|++|.+ .+.++..++..+
T Consensus 297 k~dL~kLnLngN~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRLGEKDEGIDEIASKF 324 (382)
T ss_pred chhhHHhcCCcccccccchhHHHHHHhc
Confidence 46677777777776 556666665544
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.55 E-value=6.2e-14 Score=130.05 Aligned_cols=106 Identities=25% Similarity=0.270 Sum_probs=84.3
Q ss_pred HhCCcCCcEEEeeccCCCCCHHHHHHHHh---cCCCCCEEEccccCCCHHHHHHHHh----CCCCCCEEEeecCCCcHHH
Q 007586 429 LMGCDKLRRFGLYLRQGGLTDTGLGYVGQ---YSLNVRWMLLGCVGETDEGLIAFSR----GCPNLRKLEMRGCSFSEYA 501 (597)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~ 501 (597)
+..|++|+.|+|. .+.++..+-..++. .+|+|+.|++++|.+.+.|..++.. ..|+|+.|.+.+|.|+.++
T Consensus 209 l~~~~~LevLdl~--DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 209 LEHCPHLEVLDLR--DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHhCCcceeeecc--cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 4578889999994 23677777766665 4568999999999998888766554 4589999999999998777
Q ss_pred HHHHHH---ccccccEEEeecccc--CHHHHHHHHhhCCC
Q 007586 502 LAAAVM---QLTSLRYLWVQGYRA--SKDGRDILRMVRPF 536 (597)
Q Consensus 502 ~~~l~~---~~~~L~~L~l~~~~i--~~~~~~~l~~~~~~ 536 (597)
...+.. ..|.|+.|+|++|.+ .++++..++..++.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~ 326 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDT 326 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhccc
Confidence 666553 359999999999998 78899999887754
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.7e-14 Score=128.36 Aligned_cols=205 Identities=19% Similarity=0.251 Sum_probs=134.1
Q ss_pred CCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHH
Q 007586 289 AAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGL 367 (597)
Q Consensus 289 ~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l 367 (597)
-..|++|||+...++...+..+.+.|.+|+.|.+.|. ..|.....+++ -.+|+.|+++. |+.++..++
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm----------~sG~t~n~~ 252 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSM----------CSGFTENAL 252 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeecccc----------ccccchhHH
Confidence 3569999999999999999999999999999999985 45555555544 56699999999 999999999
Q ss_pred HHHHHcCcccceeecccccCCHHHHHHHH-HhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCC
Q 007586 368 IALAQGCLELEYIAIYVSDITNESLECIG-ANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGG 446 (597)
Q Consensus 368 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 446 (597)
..+..+|..|..|+++.+.++.+.+..+. .--++|..|+++++-. ++. +..+..+...||+|.+|||++
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr--nl~----~sh~~tL~~rcp~l~~LDLSD---- 322 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR--NLQ----KSHLSTLVRRCPNLVHLDLSD---- 322 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh--hhh----hhHHHHHHHhCCceeeecccc----
Confidence 99989999999999965555444444332 2235666666665321 122 223444444555555555532
Q ss_pred CCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC-CcHHHHHHHHHccccccEEEeeccccCHH
Q 007586 447 LTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS-FSEYALAAAVMQLTSLRYLWVQGYRASKD 525 (597)
Q Consensus 447 l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 525 (597)
++.+++..+..+. +++.|++|.++.|. |....+..+-+ .|.|.+|++.|| +++.
T Consensus 323 ----------------------~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yLdv~g~-vsdt 377 (419)
T KOG2120|consen 323 ----------------------SVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNS-KPSLVYLDVFGC-VSDT 377 (419)
T ss_pred ----------------------ccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeecc-CcceEEEEeccc-cCch
Confidence 2234443333333 66677777777776 55444444433 677777777777 4444
Q ss_pred HHHHHHhhCCCcEE
Q 007586 526 GRDILRMVRPFWNI 539 (597)
Q Consensus 526 ~~~~l~~~~~~~~l 539 (597)
.++.+.+.+|.+++
T Consensus 378 ~mel~~e~~~~lki 391 (419)
T KOG2120|consen 378 TMELLKEMLSHLKI 391 (419)
T ss_pred HHHHHHHhCccccc
Confidence 55666666666544
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.49 E-value=3.2e-16 Score=154.96 Aligned_cols=340 Identities=14% Similarity=0.084 Sum_probs=171.7
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
+.+++-|.|....+.. ..+.++ .+.+ |++|.++.+.-.+- ..-...+|.|+.+.+.+|++...|. ..-.-.
T Consensus 31 Mt~~~WLkLnrt~L~~-vPeEL~-~lqk-LEHLs~~HN~L~~v---hGELs~Lp~LRsv~~R~N~LKnsGi---P~diF~ 101 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQ-VPEELS-RLQK-LEHLSMAHNQLISV---HGELSDLPRLRSVIVRDNNLKNSGI---PTDIFR 101 (1255)
T ss_pred hhheeEEEechhhhhh-ChHHHH-HHhh-hhhhhhhhhhhHhh---hhhhccchhhHHHhhhccccccCCC---Cchhcc
Confidence 3456666666553321 122222 2333 66666655422221 1112235666666666666554442 111112
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHH-HHHhhcccchhccCCCCCCCcchhccccChhhh
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLV-NFFQIATALEEFCGGSFNHPPEKYSAVAFPRSI 269 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l 269 (597)
+..|..|++|++....+ +..+ .+.+++-+|+|++|.+.+++ .++.....|-.|+++.
T Consensus 102 l~dLt~lDLShNqL~Ev-P~~L----E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~----------------- 159 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREV-PTNL----EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN----------------- 159 (1255)
T ss_pred cccceeeecchhhhhhc-chhh----hhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-----------------
Confidence 44566666666654311 1122 23455666777776655544 2222223333333321
Q ss_pred hhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeec
Q 007586 270 CRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
...+.+|.-...+.+|++|+|++|.+..-.+.++. .+++|+.|++++. .+-..++.....+.+|..++++.
T Consensus 160 -------NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 160 -------NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred -------chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 11123344444556688888888876655555543 5566777777763 23333444445566777888874
Q ss_pred CCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHH
Q 007586 349 GADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRAL 428 (597)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l 428 (597)
++++... ...-.+++|+.|+|+.|.++.-.. .... -.+|++|+++. ++++..| .-
T Consensus 232 -----------N~Lp~vP--ecly~l~~LrrLNLS~N~iteL~~-~~~~-W~~lEtLNlSr----NQLt~LP------~a 286 (1255)
T KOG0444|consen 232 -----------NNLPIVP--ECLYKLRNLRRLNLSGNKITELNM-TEGE-WENLETLNLSR----NQLTVLP------DA 286 (1255)
T ss_pred -----------cCCCcch--HHHhhhhhhheeccCcCceeeeec-cHHH-Hhhhhhhcccc----chhccch------HH
Confidence 4444321 112246678888887777754321 1122 35677777764 2333222 12
Q ss_pred HhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC-CcHHHHHHHHH
Q 007586 429 LMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS-FSEYALAAAVM 507 (597)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~ 507 (597)
+..+++|++|.+. ++.++-+++..=...+.+|+.+..++|.+.- ..+.++ .|+.|+.|.++.|. ||-... +.
T Consensus 287 vcKL~kL~kLy~n--~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglc-RC~kL~kL~L~~NrLiTLPea---IH 359 (1255)
T KOG0444|consen 287 VCKLTKLTKLYAN--NNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLC-RCVKLQKLKLDHNRLITLPEA---IH 359 (1255)
T ss_pred HhhhHHHHHHHhc--cCcccccCCccchhhhhhhHHHHhhcccccc-Cchhhh-hhHHHHHhcccccceeechhh---hh
Confidence 2345567777663 2345554443322255666666666665521 223344 67777777777777 442211 12
Q ss_pred ccccccEEEeeccc
Q 007586 508 QLTSLRYLWVQGYR 521 (597)
Q Consensus 508 ~~~~L~~L~l~~~~ 521 (597)
-++.|+.|++..|+
T Consensus 360 lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENP 373 (1255)
T ss_pred hcCCcceeeccCCc
Confidence 25677777777764
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.47 E-value=4e-13 Score=142.07 Aligned_cols=197 Identities=26% Similarity=0.353 Sum_probs=123.1
Q ss_pred hhHHHhhhcCCCCCEEEecCCc-CChHHHHHHHhcCCCCCEEEcCCC--cChHHHHHHHHhCccCCeEEeecCCCCCCcc
Q 007586 280 DHMWIIFPFAAMLKKLDLLYAL-LNTEDHCLLIQRCPNLEILETRNV--IGDRGLEVLARSCKKLKRLRIERGADEQGME 356 (597)
Q Consensus 280 ~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 356 (597)
..+..+...|++|++|.+..|. +++.++..++..|++|++|+++.+ +++.++..+..+|++|+.|.+..
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~-------- 330 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS-------- 330 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh--------
Confidence 3444455557777777777777 777777777777777888887764 44777777777788888777665
Q ss_pred ccccccCHHHHHHHHHcCcccceeecc-cccCC-HHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcC
Q 007586 357 DEEGLVSQRGLIALAQGCLELEYIAIY-VSDIT-NESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDK 434 (597)
Q Consensus 357 ~~~~~~~~~~l~~l~~~~~~L~~L~l~-~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~ 434 (597)
+.. |+.++.+.+. +.... +.........|++++.+.+..+ . +. +.+...++.+|++
T Consensus 331 --~~~------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~---~-~~----~~~~~~~l~gc~~ 388 (482)
T KOG1947|consen 331 --LNG------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC---G-IS----DLGLELSLRGCPN 388 (482)
T ss_pred --cCC------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh---h-cc----CcchHHHhcCCcc
Confidence 221 3333333331 12222 3455556666888888877763 2 22 4455556666666
Q ss_pred CcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccC-CCHHHHHHHHhCCCCCCEEEeecCC-CcHHHHHHHHHccccc
Q 007586 435 LRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVG-ETDEGLIAFSRGCPNLRKLEMRGCS-FSEYALAAAVMQLTSL 512 (597)
Q Consensus 435 L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L 512 (597)
|. ..+ .........++.|+++.+. .++..+......+.+++.+++.+|. ++......+.... ..
T Consensus 389 l~-~~l------------~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 454 (482)
T KOG1947|consen 389 LT-ESL------------ELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASNC-DL 454 (482)
T ss_pred cc-hHH------------HHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhccc-cc
Confidence 62 222 2222234448888885554 6888877776558899999999999 7777776665544 44
Q ss_pred cEEEeecc
Q 007586 513 RYLWVQGY 520 (597)
Q Consensus 513 ~~L~l~~~ 520 (597)
....+..+
T Consensus 455 ~~~~~~~~ 462 (482)
T KOG1947|consen 455 ISLDVGLK 462 (482)
T ss_pred cccccccc
Confidence 44444433
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.36 E-value=3.3e-14 Score=140.91 Aligned_cols=138 Identities=13% Similarity=0.075 Sum_probs=92.1
Q ss_pred HHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhH
Q 007586 104 VEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDW 183 (597)
Q Consensus 104 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 183 (597)
++.-..++..|++|.+++|.+.... ..+ ..+|. |+++.+..+ .+...|++.-+.++.-|..|+|++|++.+....
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~~vh-GEL-s~Lp~-LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~- 121 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLISVH-GEL-SDLPR-LRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN- 121 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhHhhh-hhh-ccchh-hHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchh-
Confidence 4444557888999999988543211 111 23465 888777665 344445555555678899999999987654321
Q ss_pred HHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCC
Q 007586 184 LHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFN 254 (597)
Q Consensus 184 l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (597)
.....++-.|++|++.+..|+... +-++..|-.|+|++|.+..++.-.+...+|+.|.++...
T Consensus 122 ----LE~AKn~iVLNLS~N~IetIPn~l----finLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 122 ----LEYAKNSIVLNLSYNNIETIPNSL----FINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred ----hhhhcCcEEEEcccCccccCCchH----HHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 223457788999998876555433 345566888899998888888777777788888776543
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.32 E-value=3.9e-12 Score=146.19 Aligned_cols=345 Identities=15% Similarity=0.071 Sum_probs=184.7
Q ss_pred HHHhCCCCcEEEecCCccCh------HHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccc
Q 007586 107 IAASFNSLKSIHFRRMIVRD------SDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKD 180 (597)
Q Consensus 107 ~~~~~~~L~~L~L~~~~i~~------~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~ 180 (597)
.++.+++|+.|.+....... .....+ ..+|..|+.|.+.++..-. ++.- ....+|++|++.++.+....
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~-~~lp~~Lr~L~~~~~~l~~---lP~~-f~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF-DYLPPKLRLLRWDKYPLRC---MPSN-FRPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcch-hhcCcccEEEEecCCCCCC---CCCc-CCccCCcEEECcCccccccc
Confidence 34567778888775542110 011112 2233337777776652211 1111 12467888888877654321
Q ss_pred hhHHHHHhhhCCccceeEeecccc-cccCHHHHHHHHHhCCCCcEEEecCCC-cccHHHHHhhcccchhccCCCCCCCcc
Q 007586 181 GDWLHELALYNTVLETLNFYMTDL-IKVNVEDLELIARNCRSLSSVKINDCE-LLDLVNFFQIATALEEFCGGSFNHPPE 258 (597)
Q Consensus 181 ~~~l~~l~~~~~~L~~L~l~~~~~-~~i~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~ 258 (597)
.-...+++|+.|+++++.. ..++ . ...+++|+.|++++|. ...++..+...++|+.|.+..+.
T Consensus 628 -----~~~~~l~~Lk~L~Ls~~~~l~~ip-----~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~---- 692 (1153)
T PLN03210 628 -----DGVHSLTGLRNIDLRGSKNLKEIP-----D-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE---- 692 (1153)
T ss_pred -----cccccCCCCCEEECCCCCCcCcCC-----c-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC----
Confidence 1123466788888876432 1121 1 2356788888888765 34455555556666666664321
Q ss_pred hhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhC
Q 007586 259 KYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSC 338 (597)
Q Consensus 259 ~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 338 (597)
.+ ..+|.. .++++|++|++++|.... .+....++|+.|++.++.-. .++.. ..+
T Consensus 693 -----------------~L--~~Lp~~-i~l~sL~~L~Lsgc~~L~----~~p~~~~nL~~L~L~~n~i~-~lP~~-~~l 746 (1153)
T PLN03210 693 -----------------NL--EILPTG-INLKSLYRLNLSGCSRLK----SFPDISTNISWLDLDETAIE-EFPSN-LRL 746 (1153)
T ss_pred -----------------Cc--CccCCc-CCCCCCCEEeCCCCCCcc----ccccccCCcCeeecCCCccc-ccccc-ccc
Confidence 00 111211 146678888887776211 11112456777777754211 11111 134
Q ss_pred ccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccC
Q 007586 339 KKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIAD 418 (597)
Q Consensus 339 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~ 418 (597)
++|++|.+..+..... ...+... .......+++|+.|+++.+.........+.. +++|+.|++.+|. .+..
T Consensus 747 ~~L~~L~l~~~~~~~l----~~~~~~l-~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~---~L~~ 817 (1153)
T PLN03210 747 ENLDELILCEMKSEKL----WERVQPL-TPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCI---NLET 817 (1153)
T ss_pred cccccccccccchhhc----ccccccc-chhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCC---CcCe
Confidence 6677777664110000 0000000 0001123578899988766543334445554 8899999988743 3332
Q ss_pred CchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC-C
Q 007586 419 LPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS-F 497 (597)
Q Consensus 419 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~-i 497 (597)
.|.. ..+++|+.|++++|. .+. .+....++|+.|++++|.++... .. ...+++|+.|++++|+ +
T Consensus 818 LP~~-------~~L~sL~~L~Ls~c~-~L~-----~~p~~~~nL~~L~Ls~n~i~~iP-~s-i~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 818 LPTG-------INLESLESLDLSGCS-RLR-----TFPDISTNISDLNLSRTGIEEVP-WW-IEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred eCCC-------CCccccCEEECCCCC-ccc-----cccccccccCEeECCCCCCccCh-HH-HhcCCCCCEEECCCCCCc
Confidence 2211 146789999996532 221 11223468999999888886432 22 3478999999999987 5
Q ss_pred cHHHHHHHHHccccccEEEeeccc-cC
Q 007586 498 SEYALAAAVMQLTSLRYLWVQGYR-AS 523 (597)
Q Consensus 498 ~~~~~~~l~~~~~~L~~L~l~~~~-i~ 523 (597)
+.... -...+++|+.+++++|. ++
T Consensus 883 ~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 883 QRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CccCc--ccccccCCCeeecCCCcccc
Confidence 43211 22457889999999997 64
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.29 E-value=1.2e-13 Score=143.23 Aligned_cols=123 Identities=20% Similarity=0.143 Sum_probs=59.5
Q ss_pred CcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCc
Q 007586 114 LKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTV 193 (597)
Q Consensus 114 L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~ 193 (597)
+..|+++.|.+-+..++.+-..+ +|++|+++.... .+ ++.-+..+++|+.|+++.|.+.... .-.....+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v--~L~~l~lsnn~~-~~--fp~~it~l~~L~~ln~s~n~i~~vp-----~s~~~~~~ 92 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRV--KLKSLDLSNNQI-SS--FPIQITLLSHLRQLNLSRNYIRSVP-----SSCSNMRN 92 (1081)
T ss_pred HHhhhccccccccCchHHhhhee--eeEEeecccccc-cc--CCchhhhHHHHhhcccchhhHhhCc-----hhhhhhhc
Confidence 55556666533333344443333 366666665522 11 1111222455666666666543222 11223446
Q ss_pred cceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCC
Q 007586 194 LETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGG 251 (597)
Q Consensus 194 L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~ 251 (597)
|+.+.|.++... ..+..+ ....+|++|+++.+.+...+..+.....++++..+
T Consensus 93 l~~lnL~~n~l~-~lP~~~----~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 93 LQYLNLKNNRLQ-SLPASI----SELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred chhheeccchhh-cCchhH----HhhhcccccccchhccCCCchhHHhhhHHHHHhhh
Confidence 666666665432 222222 34456777777776666555555544444444443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.21 E-value=1.2e-12 Score=135.88 Aligned_cols=81 Identities=20% Similarity=0.158 Sum_probs=43.9
Q ss_pred CCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCc--chhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEe
Q 007586 220 RSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPP--EKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDL 297 (597)
Q Consensus 220 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L 297 (597)
.+|++++++.+.+..++.....+.+|+.+..+...... ........+.. ..+......+++......+.|++|+|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~---l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVS---LSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH---HHhhhhhhhhCCCcccccceeeeeee
Confidence 35777888877777777777777778777765443211 11111111111 11122223444445555666777777
Q ss_pred cCCcCC
Q 007586 298 LYALLN 303 (597)
Q Consensus 298 s~~~l~ 303 (597)
..|.+.
T Consensus 318 ~~N~L~ 323 (1081)
T KOG0618|consen 318 QSNNLP 323 (1081)
T ss_pred hhcccc
Confidence 777644
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.19 E-value=3.9e-11 Score=138.01 Aligned_cols=285 Identities=15% Similarity=0.073 Sum_probs=128.6
Q ss_pred CCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhC
Q 007586 112 NSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYN 191 (597)
Q Consensus 112 ~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~ 191 (597)
.+|++|++.++.+..- ...+ ..+++ |+.|+++++..+.. ++. ...+++|++|+|++|..... +......+
T Consensus 611 ~~L~~L~L~~s~l~~L-~~~~-~~l~~-Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~L~L~~c~~L~~----lp~si~~L 680 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKL-WDGV-HSLTG-LRNIDLRGSKNLKE--IPD-LSMATNLETLKLSDCSSLVE----LPSSIQYL 680 (1153)
T ss_pred cCCcEEECcCcccccc-cccc-ccCCC-CCEEECCCCCCcCc--CCc-cccCCcccEEEecCCCCccc----cchhhhcc
Confidence 5666777766644321 1111 23455 77777766543322 111 22356677777766642111 11112234
Q ss_pred CccceeEeecccc-cccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCc-chhccccChhhh
Q 007586 192 TVLETLNFYMTDL-IKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPP-EKYSAVAFPRSI 269 (597)
Q Consensus 192 ~~L~~L~l~~~~~-~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~l 269 (597)
++|+.|++++|.. ..++ ... ++++|+.|++++|... ..+.....+|+.|.++...... .....++.+..+
T Consensus 681 ~~L~~L~L~~c~~L~~Lp-----~~i-~l~sL~~L~Lsgc~~L--~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L 752 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILP-----TGI-NLKSLYRLNLSGCSRL--KSFPDISTNISWLDLDETAIEEFPSNLRLENLDEL 752 (1153)
T ss_pred CCCCEEeCCCCCCcCccC-----CcC-CCCCCCEEeCCCCCCc--cccccccCCcCeeecCCCccccccccccccccccc
Confidence 5666666665421 1111 101 3566666666666421 1111223455555554332111 000011111111
Q ss_pred hhcCC-----cccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeE
Q 007586 270 CRLGL-----SYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRL 344 (597)
Q Consensus 270 ~~~~~-----~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L 344 (597)
...++ +.......+......++|++|+|++|......... ..++++|+.|++.+|..-..++... .+++|+.|
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L 830 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE
Confidence 10000 00000000111223467788888777622222222 3467778888877653322222211 45677777
Q ss_pred EeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHH
Q 007586 345 RIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNG 424 (597)
Q Consensus 345 ~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~ 424 (597)
++++ |..+... .....+|+.|++..+.++. ....+.. +++|+.|++.+| ..+...+.
T Consensus 831 ~Ls~----------c~~L~~~-----p~~~~nL~~L~Ls~n~i~~-iP~si~~-l~~L~~L~L~~C---~~L~~l~~--- 887 (1153)
T PLN03210 831 DLSG----------CSRLRTF-----PDISTNISDLNLSRTGIEE-VPWWIEK-FSNLSFLDMNGC---NNLQRVSL--- 887 (1153)
T ss_pred ECCC----------CCccccc-----cccccccCEeECCCCCCcc-ChHHHhc-CCCCCEEECCCC---CCcCccCc---
Confidence 7777 5544321 1123567777777776653 2233433 677777777663 33332111
Q ss_pred HHHHHhCCcCCcEEEeec
Q 007586 425 VRALLMGCDKLRRFGLYL 442 (597)
Q Consensus 425 ~~~l~~~~~~L~~L~l~~ 442 (597)
....+++|+.+++++
T Consensus 888 ---~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 888 ---NISKLKHLETVDFSD 902 (1153)
T ss_pred ---ccccccCCCeeecCC
Confidence 123455666666643
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.2e-10 Score=111.56 Aligned_cols=214 Identities=13% Similarity=0.020 Sum_probs=120.2
Q ss_pred hcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCc--ChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCH
Q 007586 287 PFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVI--GDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQ 364 (597)
Q Consensus 287 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~--~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 364 (597)
.+..+|+++.|.++.+...+.....+.|++++.|+++.+. ....+..++..+|+|+.|+|+.+ .+..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-----------rl~~ 186 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-----------RLSN 186 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-----------cccC
Confidence 4556677777777776666655556677777777777653 34556667777777777777752 2111
Q ss_pred HHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccC
Q 007586 365 RGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQ 444 (597)
Q Consensus 365 ~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 444 (597)
..-......+++|+.|.+..++++...+..+...+|+|+.|.+..-. .+...... ...+..|++|+|++ .
T Consensus 187 ~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~---~~~~~~~~------~~i~~~L~~LdLs~-N 256 (505)
T KOG3207|consen 187 FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE---IILIKATS------TKILQTLQELDLSN-N 256 (505)
T ss_pred CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc---ccceecch------hhhhhHHhhccccC-C
Confidence 00000001356677777777777777777777777777777776521 11100000 01233477777742 1
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHH-----HhCCCCCCEEEeecCCCcH-HHHHHHHHccccccEEEee
Q 007586 445 GGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAF-----SRGCPNLRKLEMRGCSFSE-YALAAAVMQLTSLRYLWVQ 518 (597)
Q Consensus 445 ~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l-----~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~ 518 (597)
..++-......+ .+|.|+.|+++.+.+++...... ....++|+.|+++.|+|.+ ..+..+ ..+++|+.|.+.
T Consensus 257 ~li~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 257 NLIDFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL-RTLENLKHLRIT 334 (505)
T ss_pred cccccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh-hccchhhhhhcc
Confidence 133333333333 67777777777777655432211 2345778888888887633 223322 235666666666
Q ss_pred ccccC
Q 007586 519 GYRAS 523 (597)
Q Consensus 519 ~~~i~ 523 (597)
++.++
T Consensus 335 ~n~ln 339 (505)
T KOG3207|consen 335 LNYLN 339 (505)
T ss_pred ccccc
Confidence 65543
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-10 Score=111.87 Aligned_cols=59 Identities=25% Similarity=0.227 Sum_probs=32.1
Q ss_pred CCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cC-----hHHHHHHHHhCccCCeEEeec
Q 007586 290 AMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IG-----DRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 290 ~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~-----~~~~~~l~~~~~~L~~L~L~~ 348 (597)
..|++|||++|.+-+.........+|.|+.|+++.+ +. +.+.......+++|+.|++..
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 457888888877444433333446777777776642 11 111122234456666666665
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.01 E-value=3.9e-10 Score=120.76 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=32.7
Q ss_pred CCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHHHHHHH
Q 007586 460 LNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDIL 530 (597)
Q Consensus 460 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l 530 (597)
++|+.|++++|.++... . ...+|+.|++++|.++.- ... ...+++|+.|++++|++++..+..+
T Consensus 402 s~L~~LdLS~N~LssIP--~---l~~~L~~L~Ls~NqLt~L-P~s-l~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTSLP--M---LPSGLLSLSVYRNQLTRL-PES-LIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCCCC--c---chhhhhhhhhccCccccc-ChH-HhhccCCCeEECCCCCCCchHHHHH
Confidence 45666666666554211 1 123456666666665421 111 2235666666666666665555544
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.90 E-value=4.9e-10 Score=120.00 Aligned_cols=165 Identities=16% Similarity=0.046 Sum_probs=101.2
Q ss_pred CCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHH
Q 007586 289 AAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI 368 (597)
Q Consensus 289 ~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 368 (597)
.++|++|++++|.+.... . ...+|+.|.+.++.-. .++. ...+|+.|++++ +.++.. .
T Consensus 301 p~~L~~LdLS~N~L~~Lp--~---lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~-----------N~Ls~L--P 358 (788)
T PRK15387 301 PPGLQELSVSDNQLASLP--A---LPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSD-----------NQLASL--P 358 (788)
T ss_pred ccccceeECCCCccccCC--C---CcccccccccccCccc-cccc---cccccceEecCC-----------CccCCC--C
Confidence 356888888888865421 1 1235777777764221 1111 124688999987 444421 1
Q ss_pred HHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCC
Q 007586 369 ALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLT 448 (597)
Q Consensus 369 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~ 448 (597)
...++|+.|+++.|.++. +....++|+.|++++. .++..|. ..++|+.|++++ +.++
T Consensus 359 ---~lp~~L~~L~Ls~N~L~~-----LP~l~~~L~~LdLs~N----~Lt~LP~---------l~s~L~~LdLS~--N~Ls 415 (788)
T PRK15387 359 ---TLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGN----RLTSLPV---------LPSELKELMVSG--NRLT 415 (788)
T ss_pred ---CCCcccceehhhcccccc-----CcccccccceEEecCC----cccCCCC---------cccCCCEEEccC--CcCC
Confidence 123567888888777763 1122457888888762 3332221 134699999953 2443
Q ss_pred HHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHH
Q 007586 449 DTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAA 505 (597)
Q Consensus 449 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l 505 (597)
. +. ....+|+.|++++|.++.. ...+. ++++|+.|++++|++++..+..+
T Consensus 416 s--IP---~l~~~L~~L~Ls~NqLt~L-P~sl~-~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 416 S--LP---MLPSGLLSLSVYRNQLTRL-PESLI-HLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred C--CC---cchhhhhhhhhccCccccc-ChHHh-hccCCCeEECCCCCCCchHHHHH
Confidence 2 11 1234788999999998743 23344 78999999999999988777665
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.77 E-value=3e-10 Score=107.58 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=36.1
Q ss_pred cccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 468 GCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 468 ~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
+.+.+.......+. ++.+|..||+.+|.+- .+....++|++|++|+++||++.
T Consensus 489 s~nqi~~vd~~~l~-nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 489 SNNQIGSVDPSGLK-NMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccccChHHhh-hhhhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence 44554333333333 6789999999999852 23334567999999999999865
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.72 E-value=1.7e-07 Score=84.64 Aligned_cols=217 Identities=16% Similarity=0.071 Sum_probs=133.9
Q ss_pred CCCCCEEEecCCcCChHHHHHHHh---cCCCCCEEEcCCCcCh----H---H---HHHHHHhCccCCeEEeecCCCCCCc
Q 007586 289 AAMLKKLDLLYALLNTEDHCLLIQ---RCPNLEILETRNVIGD----R---G---LEVLARSCKKLKRLRIERGADEQGM 355 (597)
Q Consensus 289 ~~~L~~L~Ls~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~----~---~---~~~l~~~~~~L~~L~L~~~~~~~~~ 355 (597)
...+++++||+|.|..+....+.. +-.+|+..++++.++. + . +......||+|+..+|+.+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA----- 103 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA----- 103 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-----
Confidence 677999999999998887666553 3345666666543221 1 1 12223357777777777621
Q ss_pred cccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCC
Q 007586 356 EDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKL 435 (597)
Q Consensus 356 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L 435 (597)
...-....+..+......|++|.+..|.+...+-..+++.+-+|-.. .=+..-|.|
T Consensus 104 ---fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n---------------------KKaa~kp~L 159 (388)
T COG5238 104 ---FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN---------------------KKAADKPKL 159 (388)
T ss_pred ---cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH---------------------hhhccCCCc
Confidence 11112234455555566677777777777665555555433222111 012345668
Q ss_pred cEEEeeccCC-CCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHH----hCCCCCCEEEeecCCCcHHHHHHHHH---
Q 007586 436 RRFGLYLRQG-GLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFS----RGCPNLRKLEMRGCSFSEYALAAAVM--- 507 (597)
Q Consensus 436 ~~L~l~~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~i~~~~~~~l~~--- 507 (597)
+......+.- +-+..-.....+.-.+|+.+.+..|.|..+|+..+. ..|.+|+.||+..|.+|-.+...++.
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 8877742100 234443444433335899999999999877665443 25799999999999987776655553
Q ss_pred ccccccEEEeeccccCHHHHHHHHhhC
Q 007586 508 QLTSLRYLWVQGYRASKDGRDILRMVR 534 (597)
Q Consensus 508 ~~~~L~~L~l~~~~i~~~~~~~l~~~~ 534 (597)
.++.|+.|.+.+|-++..|.+.+.+.+
T Consensus 240 ~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 240 EWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ccchhhhccccchhhccccHHHHHHHh
Confidence 357899999999988888877776654
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.70 E-value=1.1e-06 Score=79.60 Aligned_cols=203 Identities=17% Similarity=0.192 Sum_probs=119.4
Q ss_pred HHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCC-CC----hH---H---HHHHHHcCCCCCeEe
Q 007586 102 PWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCG-FS----TD---G---LLHVSRSCRQLRTLF 170 (597)
Q Consensus 102 ~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~-~~----~~---~---l~~l~~~~~~L~~L~ 170 (597)
+.+..+. ....+++++||+|.|..+....++....+ .+.|...+... ++ +. . +....-+||.|+..+
T Consensus 21 ~v~eel~-~~d~~~evdLSGNtigtEA~e~l~~~ia~-~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 21 GVVEELE-MMDELVEVDLSGNTIGTEAMEELCNVIAN-VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred HHHHHHH-hhcceeEEeccCCcccHHHHHHHHHHHhh-hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 3344444 48899999999999999999998877765 55555543211 11 11 1 122234689999999
Q ss_pred cCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHH----HHH-----HhCCCCcEEEecCCCcccHHHHHhh
Q 007586 171 LEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLE----LIA-----RNCRSLSSVKINDCELLDLVNFFQI 241 (597)
Q Consensus 171 L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~----~l~-----~~~~~L~~L~L~~~~~~~~~~~~~~ 241 (597)
|++|.+......-+..+......|++|.+++|...-+...-+. .+. ..-|.|++.....|++..
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen------- 171 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN------- 171 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-------
Confidence 9988877655555666666777888888887764333333332 111 123556666555554221
Q ss_pred cccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHH----HhcCCCC
Q 007586 242 ATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLL----IQRCPNL 317 (597)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l----~~~~~~L 317 (597)
.+.......+..-.+|+++.+.+|.|...++..+ +..+.+|
T Consensus 172 -----------------------------------gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L 216 (388)
T COG5238 172 -----------------------------------GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL 216 (388)
T ss_pred -----------------------------------CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence 1111222233333678888888888887765443 2356777
Q ss_pred CEEEcCCC-cChHHHHHH---HHhCccCCeEEeec
Q 007586 318 EILETRNV-IGDRGLEVL---ARSCKKLKRLRIER 348 (597)
Q Consensus 318 ~~L~l~~~-~~~~~~~~l---~~~~~~L~~L~L~~ 348 (597)
+.|++.++ ++..+-..+ ....+.|++|.+..
T Consensus 217 evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 217 EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred eeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 77777753 333332222 23345567777766
No 28
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.64 E-value=8.7e-10 Score=104.49 Aligned_cols=217 Identities=15% Similarity=0.088 Sum_probs=104.2
Q ss_pred hCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhh
Q 007586 110 SFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELAL 189 (597)
Q Consensus 110 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 189 (597)
+++.++.|+++++.... .+.++++.. .++.|+.+.... . .++.-....++|++|+.+.+++...... +.
T Consensus 66 nL~~l~vl~~~~n~l~~-lp~aig~l~--~l~~l~vs~n~l-s--~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~---- 134 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQ-LPAAIGELE--ALKSLNVSHNKL-S--ELPEQIGSLISLVKLDCSSNELKELPDS-IG---- 134 (565)
T ss_pred cccceeEEEeccchhhh-CCHHHHHHH--HHHHhhcccchH-h--hccHHHhhhhhhhhhhccccceeecCch-HH----
Confidence 45666777777664332 122333322 255565555421 1 1222223356677777777765433211 11
Q ss_pred hCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCc--chhccccChh
Q 007586 190 YNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPP--EKYSAVAFPR 267 (597)
Q Consensus 190 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~ 267 (597)
.+-.|+.++-..+...... +++ ..|.+|..|++.++.....+.-.-.+..|++++..+..... .....+..+.
T Consensus 135 ~~~~l~dl~~~~N~i~slp-~~~----~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLP-EDM----VNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLE 209 (565)
T ss_pred HHhhhhhhhccccccccCc-hHH----HHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhH
Confidence 1225555555555543222 222 23455667777777666555444446677777664432221 2222222222
Q ss_pred hhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEee
Q 007586 268 SICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIE 347 (597)
Q Consensus 268 ~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~ 347 (597)
.+. .+......+| .++.|..|++|.++.|.+.... +...++++++..|+++++.-.+....+ -.+.+|+.|+++
T Consensus 210 ~Ly---L~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lp-ae~~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlS 283 (565)
T KOG0472|consen 210 LLY---LRRNKIRFLP-EFPGCSLLKELHVGENQIEMLP-AEHLKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLS 283 (565)
T ss_pred HHH---hhhcccccCC-CCCccHHHHHHHhcccHHHhhH-HHHhcccccceeeeccccccccCchHH-HHhhhhhhhccc
Confidence 211 1111112233 3456667777777776654322 333446777888888764222111111 124567778887
Q ss_pred c
Q 007586 348 R 348 (597)
Q Consensus 348 ~ 348 (597)
+
T Consensus 284 N 284 (565)
T KOG0472|consen 284 N 284 (565)
T ss_pred C
Confidence 6
No 29
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.56 E-value=2.4e-08 Score=67.02 Aligned_cols=35 Identities=37% Similarity=0.857 Sum_probs=30.7
Q ss_pred CCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcc
Q 007586 13 GMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDAT 50 (597)
Q Consensus 13 ~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~ 50 (597)
.||+ ||+.+||+|| +..|+.++++|||+|++++..
T Consensus 3 ~LP~--Eil~~If~~L-~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 3 SLPD--EILLEIFSYL-DPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CS-H--HHHHHHHTTS--HHHHHHHTTSSHHHHHHHTC
T ss_pred HhHH--HHHHHHHhcC-CHHHHHHHHHHHHHHHHHHCC
Confidence 4899 9999999999 999999999999999999843
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.51 E-value=2.9e-07 Score=98.51 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=17.5
Q ss_pred CCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCC
Q 007586 291 MLKKLDLLYALLNTEDHCLLIQRCPNLEILETRN 324 (597)
Q Consensus 291 ~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~ 324 (597)
+++..++.+..+....+..+. . +.|++|.+.+
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~-~-~~L~sl~LGn 92 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLR-K-QDLESLKLGN 92 (699)
T ss_pred eeEEeeccceecchhHHHHHh-h-ccccccCCcc
Confidence 366666666555554444433 2 2277776664
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.49 E-value=5e-07 Score=96.75 Aligned_cols=198 Identities=18% Similarity=0.190 Sum_probs=136.4
Q ss_pred CCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHH-------H----HHHHH--HcCccccee
Q 007586 314 CPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQR-------G----LIALA--QGCLELEYI 380 (597)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~-------~----l~~l~--~~~~~L~~L 380 (597)
.-++...++.+.........+..... |++|.+.+ ...+... + +..+. ..-.+|++|
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGn----------l~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~L 127 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGN----------LDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHL 127 (699)
T ss_pred hheeEEeeccceecchhHHHHHhhcc-ccccCCcc----------hHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhc
Confidence 34577777776443333333333333 88888876 2222111 1 11111 123689999
Q ss_pred ecccc-cCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCC-CCCHHHHHHHHhc
Q 007586 381 AIYVS-DITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQG-GLTDTGLGYVGQY 458 (597)
Q Consensus 381 ~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~l~~~~~~~l~~~ 458 (597)
++++. .+...-+..++..+|+|++|.+.+. .+. ...+..+..++|+|..||+ ++ ++++- ..+. .
T Consensus 128 dI~G~~~~s~~W~~kig~~LPsL~sL~i~~~----~~~----~~dF~~lc~sFpNL~sLDI---S~TnI~nl--~GIS-~ 193 (699)
T KOG3665|consen 128 DISGSELFSNGWPKKIGTMLPSLRSLVISGR----QFD----NDDFSQLCASFPNLRSLDI---SGTNISNL--SGIS-R 193 (699)
T ss_pred CccccchhhccHHHHHhhhCcccceEEecCc----eec----chhHHHHhhccCccceeec---CCCCccCc--HHHh-c
Confidence 99654 4466677889998999999999873 222 3347888999999999999 45 55543 3344 7
Q ss_pred CCCCCEEEccccCCCH-HHHHHHHhCCCCCCEEEeecCCC-cHH-HHHHHH---HccccccEEEeeccccCHHHHHHHHh
Q 007586 459 SLNVRWMLLGCVGETD-EGLIAFSRGCPNLRKLEMRGCSF-SEY-ALAAAV---MQLTSLRYLWVQGYRASKDGRDILRM 532 (597)
Q Consensus 459 ~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~i-~~~-~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~ 532 (597)
+++|+.|.+.+-.+.. ..+..+. ++++|+.||+|..+. .+. .+.... ..+|+||.||.++..++++.++.+..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 8999999998888744 6667777 899999999999883 222 333333 34699999999999999999999988
Q ss_pred hCCCc
Q 007586 533 VRPFW 537 (597)
Q Consensus 533 ~~~~~ 537 (597)
..|.+
T Consensus 273 sH~~L 277 (699)
T KOG3665|consen 273 SHPNL 277 (699)
T ss_pred hCccH
Confidence 87753
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.48 E-value=7.1e-07 Score=96.60 Aligned_cols=130 Identities=9% Similarity=-0.019 Sum_probs=72.6
Q ss_pred ccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHH
Q 007586 376 ELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYV 455 (597)
Q Consensus 376 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l 455 (597)
+|+.|+++.|.++... ..+ .++|+.|.++++ .++..+. . -+++|+.|++++ +.++. ....
T Consensus 305 sL~~L~Ls~N~Lt~LP-~~l---~~sL~~L~Ls~N----~Lt~LP~--~------l~~sL~~L~Ls~--N~L~~-LP~~- 364 (754)
T PRK15370 305 GITHLNVQSNSLTALP-ETL---PPGLKTLEAGEN----ALTSLPA--S------LPPELQVLDVSK--NQITV-LPET- 364 (754)
T ss_pred hHHHHHhcCCccccCC-ccc---cccceeccccCC----ccccCCh--h------hcCcccEEECCC--CCCCc-CChh-
Confidence 4566666665554211 011 256666666653 2221111 0 125688888843 13331 1111
Q ss_pred HhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcH--HHHHHHHHccccccEEEeeccccCHHHHHHHH
Q 007586 456 GQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSE--YALAAAVMQLTSLRYLWVQGYRASKDGRDILR 531 (597)
Q Consensus 456 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~--~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 531 (597)
..+.|+.|++++|.++... ..+. .+|+.|++++|.++. ..+..+...++++..|++.+|+++...++.+.
T Consensus 365 --lp~~L~~LdLs~N~Lt~LP-~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~ 436 (754)
T PRK15370 365 --LPPTITTLDVSRNALTNLP-ENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQ 436 (754)
T ss_pred --hcCCcCEEECCCCcCCCCC-HhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHH
Confidence 2357888888888876432 1222 368888888888642 23444555568888888888888776666553
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.47 E-value=1.4e-08 Score=96.38 Aligned_cols=100 Identities=16% Similarity=0.024 Sum_probs=66.1
Q ss_pred HhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHc
Q 007586 429 LMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQ 508 (597)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 508 (597)
+..+++|++|++++ +.++...-..+. .+..++.|.|..|++....-. +.+++..|+.|++.+|.||-.+..+|- .
T Consensus 270 f~~L~~L~~lnlsn--N~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~~~-~f~~ls~L~tL~L~~N~it~~~~~aF~-~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN--NKITRIEDGAFE-GAAELQELYLTRNKLEFVSSG-MFQGLSGLKTLSLYDNQITTVAPGAFQ-T 344 (498)
T ss_pred HhhcccceEeccCC--Cccchhhhhhhc-chhhhhhhhcCcchHHHHHHH-hhhccccceeeeecCCeeEEEeccccc-c
Confidence 56788899999942 245444333333 567899999988887554433 445889999999999997655544443 3
Q ss_pred cccccEEEeeccc-cCHHHHHHHHhh
Q 007586 509 LTSLRYLWVQGYR-ASKDGRDILRMV 533 (597)
Q Consensus 509 ~~~L~~L~l~~~~-i~~~~~~~l~~~ 533 (597)
...|..|++-+|+ --+.-+.|+.+.
T Consensus 345 ~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred cceeeeeehccCcccCccchHHHHHH
Confidence 6788888888776 333334444443
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.37 E-value=2.4e-08 Score=94.74 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=63.0
Q ss_pred hhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHH
Q 007586 286 FPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQR 365 (597)
Q Consensus 286 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 365 (597)
+..+++|+.|+|++|.++...-..+. +...+++|.+..+.-...-..+......|+.|+|++ ++++-.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-----------N~it~~ 337 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFE-GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-----------NQITTV 337 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhc-chhhhhhhhcCcchHHHHHHHhhhccccceeeeecC-----------CeeEEE
Confidence 46678888888888887765544443 677788888876543333344456677788888887 555543
Q ss_pred HHHHHHHcCcccceeecccccC-CHHHHHHHHHhc
Q 007586 366 GLIALAQGCLELEYIAIYVSDI-TNESLECIGANL 399 (597)
Q Consensus 366 ~l~~l~~~~~~L~~L~l~~~~l-~~~~~~~l~~~~ 399 (597)
....+ .....|.+|.+-.|.+ -+--+.+++.++
T Consensus 338 ~~~aF-~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 338 APGAF-QTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred ecccc-cccceeeeeehccCcccCccchHHHHHHH
Confidence 33222 2345577777743333 344556666655
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.28 E-value=1.7e-06 Score=75.89 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=15.9
Q ss_pred CCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 163 CRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
+.+|+.|+|++|.++.... + ..++.|+.|++++|.+..+.. .+...+|+|++|.+++|.
T Consensus 41 l~~L~~L~Ls~N~I~~l~~--l----~~L~~L~~L~L~~N~I~~i~~----~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEG--L----PGLPRLKTLDLSNNRISSISE----GLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp -TT--EEE-TTS--S--TT----------TT--EEE--SS---S-CH----HHHHH-TT--EEE-TTS-
T ss_pred hcCCCEEECCCCCCccccC--c----cChhhhhhcccCCCCCCcccc----chHHhCCcCCEEECcCCc
Confidence 4455555555555443221 1 123455555555555432221 112345666666666654
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.26 E-value=5e-06 Score=90.18 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=25.6
Q ss_pred CCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCccc
Q 007586 112 NSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIF 177 (597)
Q Consensus 112 ~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 177 (597)
.+.+.|+++++.++.-. ..+ .++ ++.|+++++ .++. ++.. ..++|++|++++|.++
T Consensus 178 ~~~~~L~L~~~~LtsLP-~~I---p~~-L~~L~Ls~N-~Lts--LP~~--l~~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 178 NNKTELRLKILGLTTIP-ACI---PEQ-ITTLILDNN-ELKS--LPEN--LQGNIKTLYANSNQLT 233 (754)
T ss_pred cCceEEEeCCCCcCcCC-ccc---ccC-CcEEEecCC-CCCc--CChh--hccCCCEEECCCCccc
Confidence 45666666665443211 111 123 666666655 2221 1111 1245666666666554
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=6.7e-07 Score=78.42 Aligned_cols=108 Identities=21% Similarity=0.212 Sum_probs=37.4
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
...+++|+|+++.|+. ++.+...+.+ |+.|++++|.-.+-.++ ..++.|++|++++|.+++.+. .+...
T Consensus 18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~-L~~L~Ls~N~I~~l~~l----~~L~~L~~L~L~~N~I~~i~~----~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST--IENLGATLDK-LEVLDLSNNQITKLEGL----PGLPRLKTLDLSNNRISSISE----GLDKN 86 (175)
T ss_dssp --------------------S--TT-TT---EEE-TTS--S--TT--------TT--EEE--SS---S-CH----HHHHH
T ss_pred cccccccccccccccc--ccchhhhhcC-CCEEECCCCCCccccCc----cChhhhhhcccCCCCCCcccc----chHHh
Confidence 3467889999887764 3445444556 99999998843322222 237889999999998876542 23345
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCc
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCEL 232 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 232 (597)
+++|++|.+++|.+..+.. +..+ ..+|+|++|++.+|++
T Consensus 87 lp~L~~L~L~~N~I~~l~~--l~~L-~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNE--LEPL-SSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TT--EEE-TTS---SCCC--CGGG-GG-TT--EEE-TT-GG
T ss_pred CCcCCEEECcCCcCCChHH--hHHH-HcCCCcceeeccCCcc
Confidence 7799999999887643432 3333 4689999999999874
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=6.3e-07 Score=82.17 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=136.6
Q ss_pred HHHhhhcCCCCCEEEecCCcCC-hHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCcccccc
Q 007586 282 MWIIFPFAAMLKKLDLLYALLN-TEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEG 360 (597)
Q Consensus 282 l~~~~~~~~~L~~L~Ls~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~ 360 (597)
...+...+..++++||.+|.++ +..+..+..++|.|+.|+++.+.-...+..+.....+|+.|.|.+ +
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-----------T 131 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-----------T 131 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-----------C
Confidence 4455667888999999999965 566888899999999999997644444444333346799999987 6
Q ss_pred ccCHHHHHHHHHcCcccceeecccccC-----CHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCC
Q 007586 361 LVSQRGLIALAQGCLELEYIAIYVSDI-----TNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKL 435 (597)
Q Consensus 361 ~~~~~~l~~l~~~~~~L~~L~l~~~~l-----~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L 435 (597)
.++......+....|.++.|+++.|++ .++..+. .-+.+++|....|. .-. ...+..+.+-+|++
T Consensus 132 ~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~---~~~----w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 132 GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCL---EQL----WLNKNKLSRIFPNV 201 (418)
T ss_pred CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcH---HHH----HHHHHhHHhhcccc
Confidence 777777777777888888888866632 2222222 22345555444321 110 22233455667888
Q ss_pred cEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHH-HHHHHHhCCCCCCEEEeecCCCcHHH-----HHHHHHcc
Q 007586 436 RRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDE-GLIAFSRGCPNLRKLEMRGCSFSEYA-----LAAAVMQL 509 (597)
Q Consensus 436 ~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~i~~~~-----~~~l~~~~ 509 (597)
..+-+. .+-+.+..-..=....|.+-.|+|+.++|.+. .+.++. +++.|..|.++++++.|.- ..-++.++
T Consensus 202 ~sv~v~--e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 202 NSVFVC--EGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN-GFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred hheeee--cCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc-CCchhheeeccCCcccccccCCcceEEEEeec
Confidence 888883 22333332222233677788888988888544 445554 8999999999999975431 11233456
Q ss_pred ccccEEEee
Q 007586 510 TSLRYLWVQ 518 (597)
Q Consensus 510 ~~L~~L~l~ 518 (597)
++++.|+=+
T Consensus 279 ~~v~vLNGs 287 (418)
T KOG2982|consen 279 TKVQVLNGS 287 (418)
T ss_pred cceEEecCc
Confidence 777777633
No 39
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=98.20 E-value=1.2e-06 Score=89.91 Aligned_cols=226 Identities=18% Similarity=0.186 Sum_probs=119.2
Q ss_pred CCCCCEEEecCCcCChHHHHHHH---hcCCC-CCEEEcCC-CcChHHHHHHHHhC----ccCCeEEeecCCCCCCccccc
Q 007586 289 AAMLKKLDLLYALLNTEDHCLLI---QRCPN-LEILETRN-VIGDRGLEVLARSC----KKLKRLRIERGADEQGMEDEE 359 (597)
Q Consensus 289 ~~~L~~L~Ls~~~l~~~~~~~l~---~~~~~-L~~L~l~~-~~~~~~~~~l~~~~----~~L~~L~L~~~~~~~~~~~~~ 359 (597)
..++++|++++|.++......+. ...+. +..|++.+ ...|.++..+...+ +.++++++..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~----------- 271 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR----------- 271 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc-----------
Confidence 34567777777776655543332 22233 44456654 34555555544433 3467888887
Q ss_pred cccCHH---HHHHHHHcCcccceeecccccCCHHHHHHHHHhc---cCcccceecccCccccccCCchhHHHHHHHhCCc
Q 007586 360 GLVSQR---GLIALAQGCLELEYIAIYVSDITNESLECIGANL---RNLCDFRLVLLDREEKIADLPLDNGVRALLMGCD 433 (597)
Q Consensus 360 ~~~~~~---~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~ 433 (597)
+.+++. .+......++.++.+.++.+.+++.+...+...+ ..+..+.+.+. ...+.. ..++........
T Consensus 272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~---~~~~~~--~~~~~~~~~~~~ 346 (478)
T KOG4308|consen 272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT---GKGTRG--GTSVLAEADAQR 346 (478)
T ss_pred CCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc---Cccchh--HHHHHHHHHHHh
Confidence 345544 3444445678888888888888887776665543 33334433321 111100 011111111111
Q ss_pred C-CcEEEeeccCCCCCHHHHHHHHh----cCCCCCEEEccccCCCHHHHHHHH---hCCCCCCEEEeecCCCcHHHHHHH
Q 007586 434 K-LRRFGLYLRQGGLTDTGLGYVGQ----YSLNVRWMLLGCVGETDEGLIAFS---RGCPNLRKLEMRGCSFSEYALAAA 505 (597)
Q Consensus 434 ~-L~~L~l~~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l 505 (597)
. +.....+ .....++....+.. ..+.+..+.+..+.+.+.+...+. ...+.++.++++.|...+++...+
T Consensus 347 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l 424 (478)
T KOG4308|consen 347 QLLSELGIS--GNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVL 424 (478)
T ss_pred hhhHHHHhh--hccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHH
Confidence 1 2222221 12444444433322 233466666655555555443333 345888899999888655544444
Q ss_pred H----HccccccEEEeeccccCHHHHHHHHhh
Q 007586 506 V----MQLTSLRYLWVQGYRASKDGRDILRMV 533 (597)
Q Consensus 506 ~----~~~~~L~~L~l~~~~i~~~~~~~l~~~ 533 (597)
. .+. .++.++++.+.++..+.....+.
T Consensus 425 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 455 (478)
T KOG4308|consen 425 TEQLSRNG-SLKALRLSRNPITALGTEELQRA 455 (478)
T ss_pred HHhhhhcc-cchhhhhccChhhhcchHHHHHH
Confidence 3 445 88888888888777666555443
No 40
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.19 E-value=1.1e-06 Score=57.09 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=32.3
Q ss_pred CCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcccc
Q 007586 14 MPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTR 52 (597)
Q Consensus 14 LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~ 52 (597)
||+ |++.+||.|| +..|+.+++.|||+|+.+.....
T Consensus 1 lP~--~ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~~~~ 36 (41)
T smart00256 1 LPD--EILEEILSKL-PPKDLLRLRKVSRRWRSLIDSHD 36 (41)
T ss_pred CCH--HHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcChh
Confidence 588 9999999999 89999999999999999975443
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=2.8e-06 Score=78.05 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=57.9
Q ss_pred eEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchh
Q 007586 168 TLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEE 247 (597)
Q Consensus 168 ~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~ 247 (597)
-|.+.++.+...|. ...+...+..++.+++.+|.+ .....+..+..++|.|+.|+|+.|.+...
T Consensus 49 llvln~~~id~~gd--~~~~~~~~~~v~elDL~~N~i--SdWseI~~ile~lP~l~~LNls~N~L~s~------------ 112 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGD--VMLFGSSVTDVKELDLTGNLI--SDWSEIGAILEQLPALTTLNLSCNSLSSD------------ 112 (418)
T ss_pred hheecCCCCCcchh--HHHHHHHhhhhhhhhcccchh--ccHHHHHHHHhcCccceEeeccCCcCCCc------------
Confidence 34444454443332 334444555555566555543 23445556666667777777766553210
Q ss_pred ccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCC
Q 007586 248 FCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRN 324 (597)
Q Consensus 248 L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~ 324 (597)
+. .+| ....+|+.|-|.++.+.+.....+...+|.+++|+++.
T Consensus 113 -----------------------------I~--~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 113 -----------------------------IK--SLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred -----------------------------cc--cCc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 00 011 12345777777776676666666666677777776653
No 42
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.06 E-value=8.7e-07 Score=59.88 Aligned_cols=35 Identities=37% Similarity=0.790 Sum_probs=29.5
Q ss_pred CCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcc
Q 007586 13 GMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDAT 50 (597)
Q Consensus 13 ~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~ 50 (597)
+||+ |++.+||+|| +..|+.++++|||+|++++..
T Consensus 5 ~LP~--~il~~Il~~l-~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 5 DLPD--EILQEILSYL-DPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HS-H--HHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HCCH--HHHHHHHHHC-cHHHHHHHHHHhhHHHHHHcC
Confidence 4899 9999999999 999999999999999998743
No 43
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=1.1e-05 Score=70.21 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=84.6
Q ss_pred CcEEEeeccCC-CCCHHHHHHHHhcCCCCCEEEcccc-CCCHHHHHHHHhCCCCCCEEEeecCC-CcHHHHHHHHHcccc
Q 007586 435 LRRFGLYLRQG-GLTDTGLGYVGQYSLNVRWMLLGCV-GETDEGLIAFSRGCPNLRKLEMRGCS-FSEYALAAAVMQLTS 511 (597)
Q Consensus 435 L~~L~l~~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~ 511 (597)
++.++- ++ .|..++++.+. .++.++.|.+.++ .+.|.++..+..-.++|+.|+|++|+ ||+.++.-+.. +++
T Consensus 103 IeaVDA---sds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lkn 177 (221)
T KOG3864|consen 103 IEAVDA---SDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKN 177 (221)
T ss_pred EEEEec---CCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhh
Confidence 666666 33 78888898887 7899999999655 57999999998777999999999999 99999998876 999
Q ss_pred ccEEEeeccc-cC-HH-HHHHHHhhCCCcEEEEcC
Q 007586 512 LRYLWVQGYR-AS-KD-GRDILRMVRPFWNIELIP 543 (597)
Q Consensus 512 L~~L~l~~~~-i~-~~-~~~~l~~~~~~~~l~~~~ 543 (597)
|+.|.+.+-+ +. .+ ....+.+.+|.+++.-.+
T Consensus 178 Lr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~d 212 (221)
T KOG3864|consen 178 LRRLHLYDLPYVANLELVQRQLEEALPKCDIVGPD 212 (221)
T ss_pred hHHHHhcCchhhhchHHHHHHHHHhCcccceechh
Confidence 9999999887 33 22 345666778988777665
No 44
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.74 E-value=6.1e-05 Score=77.46 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=39.4
Q ss_pred cCCCCCEEEccccCCCHHHHHHHH----hCCCCCCEEEeecCCCcHHHHHHHHH---ccccccEEEeeccccC
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFS----RGCPNLRKLEMRGCSFSEYALAAAVM---QLTSLRYLWVQGYRAS 523 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~i~ 523 (597)
..+.++.++++.|...+++...+. .+. .++.+.++.++++..+.....+ .-+..+.....+|.++
T Consensus 402 ~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (478)
T KOG4308|consen 402 SNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIG 473 (478)
T ss_pred hcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCccc
Confidence 556777777777766555544333 345 8888888888865544444332 2356666666666544
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.73 E-value=3.8e-05 Score=70.79 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=22.9
Q ss_pred CcccceeecccccCCH-HHHHHHHHhccCcccceecc
Q 007586 374 CLELEYIAIYVSDITN-ESLECIGANLRNLCDFRLVL 409 (597)
Q Consensus 374 ~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~ 409 (597)
+-+|..||+..|+|.. +.+..|++ +|.|+++.+.+
T Consensus 373 LYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~ 408 (490)
T KOG1259|consen 373 LYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTG 408 (490)
T ss_pred hhhheeccccccchhhHHHhccccc-ccHHHHHhhcC
Confidence 3457777777777743 44555665 78888777765
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.59 E-value=7e-05 Score=69.11 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=76.5
Q ss_pred hcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHH
Q 007586 287 PFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQR 365 (597)
Q Consensus 287 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 365 (597)
.....|++||||+|.|+... .-..-.|.++.|+++.+ +...+ . ...+++|++|++++ +.++.-
T Consensus 281 dTWq~LtelDLS~N~I~~iD--ESvKL~Pkir~L~lS~N~i~~v~--n-La~L~~L~~LDLS~-----------N~Ls~~ 344 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQID--ESVKLAPKLRRLILSQNRIRTVQ--N-LAELPQLQLLDLSG-----------NLLAEC 344 (490)
T ss_pred chHhhhhhccccccchhhhh--hhhhhccceeEEeccccceeeeh--h-hhhcccceEeeccc-----------chhHhh
Confidence 34556999999999965322 22335789999999964 32211 1 24468899999997 444332
Q ss_pred -HHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEee
Q 007586 366 -GLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLY 441 (597)
Q Consensus 366 -~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~ 441 (597)
++. ..+-+.++|.+..|.+.+ +..+.+ +=+|..|++.+ ++|.. -.-..-+.++|.|+.+.|.
T Consensus 345 ~Gwh---~KLGNIKtL~La~N~iE~--LSGL~K-LYSLvnLDl~~----N~Ie~----ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 345 VGWH---LKLGNIKTLKLAQNKIET--LSGLRK-LYSLVNLDLSS----NQIEE----LDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhH---hhhcCEeeeehhhhhHhh--hhhhHh-hhhheeccccc----cchhh----HHHhcccccccHHHHHhhc
Confidence 332 346678999888776632 333333 45677777765 23331 1111124578889999994
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.58 E-value=2.2e-05 Score=80.94 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=29.5
Q ss_pred CCEEEccccCCCH-HHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccc
Q 007586 462 VRWMLLGCVGETD-EGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 462 L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 521 (597)
|+.|++.+|.++. .++. ++.+|+.||+++|-+.+-.-......+..|+.|+|.||+
T Consensus 234 L~~L~lrnN~l~tL~gie----~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRGIE----NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred heeeeecccHHHhhhhHH----hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5666666555532 2222 455666666666665443333333335556666666665
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.48 E-value=3.7e-06 Score=60.17 Aligned_cols=60 Identities=23% Similarity=0.244 Sum_probs=34.8
Q ss_pred CCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccc
Q 007586 460 LNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 460 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 521 (597)
|+|++|+++.|+++......+ .++++|+.|++++|.++......+ ..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-~~l~~L~~L~l~~N~l~~i~~~~f-~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-SNLPNLETLDLSNNNLTSIPPDAF-SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-TTGTTESEEEETSSSESEEETTTT-TTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHH-cCCCCCCEeEccCCccCccCHHHH-cCCCCCCEEeCcCCc
Confidence 456666776666654433222 366777777777777543222222 246777777777775
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=2.9e-05 Score=79.98 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=18.9
Q ss_pred hCCCCcEEEecCCCcccHHHHHhhcccchhccCCC
Q 007586 218 NCRSLSSVKINDCELLDLVNFFQIATALEEFCGGS 252 (597)
Q Consensus 218 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~ 252 (597)
-++.|+.|+|+.|.+.... .++.++.|.+|++++
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhccccccccccc
Confidence 3455666677666655444 444555555555543
No 50
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.00019 Score=62.63 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=64.8
Q ss_pred CcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCc-ccccchhHHHHHhhhCC
Q 007586 114 LKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESS-IFEKDGDWLHELALYNT 192 (597)
Q Consensus 114 L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~l~~~~~ 192 (597)
++.++-+++.|..+++..+ ..++. ++.|.+.+|..+.+.++..+....++|+.|+|++|. |++.|..++..+.
T Consensus 103 IeaVDAsds~I~~eGle~L-~~l~~-i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk---- 176 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL-RDLRS-IKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK---- 176 (221)
T ss_pred EEEEecCCchHHHHHHHHH-hccch-hhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh----
Confidence 6778888888888888887 44555 888888888888888888888878888888888885 8888877766554
Q ss_pred ccceeEeecc
Q 007586 193 VLETLNFYMT 202 (597)
Q Consensus 193 ~L~~L~l~~~ 202 (597)
+|+.|.|..-
T Consensus 177 nLr~L~l~~l 186 (221)
T KOG3864|consen 177 NLRRLHLYDL 186 (221)
T ss_pred hhHHHHhcCc
Confidence 7777777653
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.21 E-value=7.8e-06 Score=68.91 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=31.7
Q ss_pred CCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 163 CRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
+.++..|.|++|.++..... +.. ..+|+.|+++.+++. .+..-...+|+|+.|++.-+.
T Consensus 32 ~s~ITrLtLSHNKl~~vppn-ia~----l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPN-IAE----LKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred hhhhhhhhcccCceeecCCc-HHH----hhhhhhhhcccchhh-----hcChhhhhchhhhheecchhh
Confidence 45566777777776543311 222 236666666665532 222333456666666666544
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.16 E-value=0.00015 Score=51.73 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=33.6
Q ss_pred CCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 164 RQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
|+|++|++++|.+......+ ...+++|++|+++++....+....+ .++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~----f~~l~~L~~L~l~~N~l~~i~~~~f----~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDS----FSNLPNLETLDLSNNNLTSIPPDAF----SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTT----TTTGTTESEEEETSSSESEEETTTT----TTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHH----HcCCCCCCEeEccCCccCccCHHHH----cCCCCCCEEeCcCCc
Confidence 45666666666655443222 2234566666666665544443332 466777777777764
No 53
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.05 E-value=6.1e-05 Score=63.64 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=51.8
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
++.|.++.+ .++. ++.-...+.+|+.|++.+|++.+... -...+++|+.|+++.+... +.+.+ +..+
T Consensus 35 ITrLtLSHN-Kl~~--vppnia~l~nlevln~~nnqie~lp~-----~issl~klr~lnvgmnrl~-~lprg----fgs~ 101 (264)
T KOG0617|consen 35 ITRLTLSHN-KLTV--VPPNIAELKNLEVLNLSNNQIEELPT-----SISSLPKLRILNVGMNRLN-ILPRG----FGSF 101 (264)
T ss_pred hhhhhcccC-ceee--cCCcHHHhhhhhhhhcccchhhhcCh-----hhhhchhhhheecchhhhh-cCccc----cCCC
Confidence 777777766 2221 11222347889999999998765542 1234668899988877654 32333 3467
Q ss_pred CCCcEEEecCCCc
Q 007586 220 RSLSSVKINDCEL 232 (597)
Q Consensus 220 ~~L~~L~L~~~~~ 232 (597)
|-|+.|++..+.+
T Consensus 102 p~levldltynnl 114 (264)
T KOG0617|consen 102 PALEVLDLTYNNL 114 (264)
T ss_pred chhhhhhcccccc
Confidence 8899999988653
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.93 E-value=0.00035 Score=77.45 Aligned_cols=125 Identities=16% Similarity=0.060 Sum_probs=70.0
Q ss_pred CCCCeEecCCCcccccchhHHHHHhhhCCccceeEeeccc--ccccCHHHHHHHHHhCCCCcEEEecCCC-cccHHHHHh
Q 007586 164 RQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTD--LIKVNVEDLELIARNCRSLSSVKINDCE-LLDLVNFFQ 240 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~i~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~~ 240 (597)
...+...+.++.+.... ....++.|++|-+..+. ...++ ..++..+|.|++|++++|. +..+|..++
T Consensus 523 ~~~rr~s~~~~~~~~~~------~~~~~~~L~tLll~~n~~~l~~is----~~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA------GSSENPKLRTLLLQRNSDWLLEIS----GEFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred hheeEEEEeccchhhcc------CCCCCCccceEEEeecchhhhhcC----HHHHhhCcceEEEECCCCCccCcCChHHh
Confidence 34566666555532211 12235567777776543 11111 2234567888888888754 456677777
Q ss_pred hcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCc-CChHHHHHHHhcCCCCCE
Q 007586 241 IATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYAL-LNTEDHCLLIQRCPNLEI 319 (597)
Q Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~l~~~~~~L~~ 319 (597)
..-+|+.|++.... ...+|.-+.+++.|.+|++..+. +... ..+...+++|++
T Consensus 593 ~Li~LryL~L~~t~------------------------I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTG------------------------ISHLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRV 646 (889)
T ss_pred hhhhhhcccccCCC------------------------ccccchHHHHHHhhheeccccccccccc--cchhhhcccccE
Confidence 77777777664321 12345555666677777777655 2111 233335777777
Q ss_pred EEcCC
Q 007586 320 LETRN 324 (597)
Q Consensus 320 L~l~~ 324 (597)
|.+..
T Consensus 647 L~l~~ 651 (889)
T KOG4658|consen 647 LRLPR 651 (889)
T ss_pred EEeec
Confidence 77765
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.79 E-value=0.0011 Score=73.74 Aligned_cols=106 Identities=14% Similarity=0.016 Sum_probs=66.3
Q ss_pred hCCCCcEEEecCCC--c-ccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCE
Q 007586 218 NCRSLSSVKINDCE--L-LDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKK 294 (597)
Q Consensus 218 ~~~~L~~L~L~~~~--~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~ 294 (597)
.++.|++|-+.++. . .....++..+|.|..|+++.+ .....+|...+.+-+|++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-----------------------~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-----------------------SSLSKLPSSIGELVHLRY 599 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-----------------------CccCcCChHHhhhhhhhc
Confidence 46778888888764 2 233445667777777777632 222445666667777888
Q ss_pred EEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeec
Q 007586 295 LDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 295 L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
|+++++.+. .+..-+.++..|.+|++.....-..+..+...+++|+.|.+..
T Consensus 600 L~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 600 LDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 888888766 2223334566777787775433333344445567788888876
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.61 E-value=0.0011 Score=43.22 Aligned_cols=37 Identities=24% Similarity=0.127 Sum_probs=18.5
Q ss_pred CCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCc
Q 007586 460 LNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFS 498 (597)
Q Consensus 460 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 498 (597)
++|++|+++.|+|++... ...++++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~--~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP--ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGG--HGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCc--hHhCCCCCCEEEecCCCCC
Confidence 355666666666654332 1235566666666666554
No 57
>PLN03150 hypothetical protein; Provisional
Probab=96.55 E-value=0.0023 Score=69.24 Aligned_cols=92 Identities=21% Similarity=0.107 Sum_probs=61.5
Q ss_pred CcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccE
Q 007586 435 LRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRY 514 (597)
Q Consensus 435 L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 514 (597)
++.|+|.. ..++......+. .+++|+.|+|+.|.++......+. ++++|+.|++++|.++......+ ..+++|+.
T Consensus 420 v~~L~L~~--n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDN--QGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESL-GQLTSLRI 494 (623)
T ss_pred EEEEECCC--CCccccCCHHHh-CCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHH-hcCCCCCE
Confidence 67777742 244444344444 678888888888887665444444 78888888888888765444433 34888888
Q ss_pred EEeeccccCHHHHHHHH
Q 007586 515 LWVQGYRASKDGRDILR 531 (597)
Q Consensus 515 L~l~~~~i~~~~~~~l~ 531 (597)
|++++|+++......+.
T Consensus 495 L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 495 LNLNGNSLSGRVPAALG 511 (623)
T ss_pred EECcCCcccccCChHHh
Confidence 88888887765555554
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.52 E-value=0.0021 Score=41.94 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=26.6
Q ss_pred CCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCH
Q 007586 485 PNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASK 524 (597)
Q Consensus 485 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 524 (597)
++|++|++++|.|++-. ....++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 47888888888887543 223568888888888888663
No 59
>PLN03150 hypothetical protein; Provisional
Probab=96.34 E-value=0.0045 Score=66.98 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=50.6
Q ss_pred cceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHH
Q 007586 377 LEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVG 456 (597)
Q Consensus 377 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~ 456 (597)
++.|+|..+.++......+.. +++|+.|++++.. +.. .+...+..+++|+.|+|++ +.++......+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~----l~g-----~iP~~~~~l~~L~~LdLs~--N~lsg~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNS----IRG-----NIPPSLGSITSLEVLDLSY--NSFNGSIPESLG 487 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCc----ccC-----cCChHHhCCCCCCEEECCC--CCCCCCCchHHh
Confidence 555666555555444444444 5666666665421 110 0111233555566666631 134433333343
Q ss_pred hcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC
Q 007586 457 QYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS 496 (597)
Q Consensus 457 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 496 (597)
.+++|+.|+|++|.++......+.....++..+++.+|.
T Consensus 488 -~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 -QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred -cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 455666666655555544444433223344555555554
No 60
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.14 E-value=0.0052 Score=34.90 Aligned_cols=21 Identities=43% Similarity=0.923 Sum_probs=9.1
Q ss_pred CCCCEEEeecCC-CcHHHHHHH
Q 007586 485 PNLRKLEMRGCS-FSEYALAAA 505 (597)
Q Consensus 485 ~~L~~L~l~~~~-i~~~~~~~l 505 (597)
++|++|++++|. |||.++.++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 344444444444 444444433
No 61
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.12 E-value=0.0047 Score=35.07 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.9
Q ss_pred cccccEEEeeccc-cCHHHHHHHHh
Q 007586 509 LTSLRYLWVQGYR-ASKDGRDILRM 532 (597)
Q Consensus 509 ~~~L~~L~l~~~~-i~~~~~~~l~~ 532 (597)
|++|++|++++|. +|+.|+..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 6899999999998 99999998864
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.80 E-value=0.011 Score=60.67 Aligned_cols=100 Identities=22% Similarity=0.235 Sum_probs=50.2
Q ss_pred ccEEEecCCCCCChHHHHHHHHcC-CCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHh
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSC-RQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARN 218 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 218 (597)
++.|.+.... +++ +....... ++|++|+++++.+.... .-...++.|+.|+++.+... .+......
T Consensus 118 l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~-----~~~~~l~~L~~L~l~~N~l~-----~l~~~~~~ 184 (394)
T COG4886 118 LTSLDLDNNN-ITD--IPPLIGLLKSNLKELDLSDNKIESLP-----SPLRNLPNLKNLDLSFNDLS-----DLPKLLSN 184 (394)
T ss_pred eeEEecCCcc-ccc--Cccccccchhhcccccccccchhhhh-----hhhhccccccccccCCchhh-----hhhhhhhh
Confidence 5666655442 111 22222233 26666666666644321 01234556666666665532 22222224
Q ss_pred CCCCcEEEecCCCcccHHHHHhhcccchhccCCC
Q 007586 219 CRSLSSVKINDCELLDLVNFFQIATALEEFCGGS 252 (597)
Q Consensus 219 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~ 252 (597)
.+.|+.|+++++.+..++.......+|+++.++.
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence 5667777777766666655544444566665543
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.0048 Score=56.84 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=16.6
Q ss_pred CCCeEecCCCcccccchhHHHHHhhhCCccceeEeeccc
Q 007586 165 QLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTD 203 (597)
Q Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 203 (597)
+.++|+.-+|.+.|.. +...++.||.|.|+.|.
T Consensus 20 ~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNk 52 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNK 52 (388)
T ss_pred HhhhhcccCCCccHHH------HHHhcccceeEEeeccc
Confidence 4555666666555433 23334455555555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.57 E-value=0.0015 Score=59.69 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=35.4
Q ss_pred CCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 163 CRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
+|+|++|.++.|.+...+. +..+...+|+|++++++.|.+.. ...+..+ ..+++|..|++..|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~--l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl-~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGG--LEVLAEKAPNLKVLNLSGNKIKD--LSTLRPL-KELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCccccccc--ceehhhhCCceeEEeecCCcccc--ccccchh-hhhcchhhhhcccCC
Confidence 5677777777774332221 34445556777777777666431 1122222 245667777777665
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.0044 Score=57.08 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=18.6
Q ss_pred cCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcC
Q 007586 288 FAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETR 323 (597)
Q Consensus 288 ~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~ 323 (597)
.|++|++|+|..|.|.+..-...+.++|+|+.|.|.
T Consensus 61 rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 61 RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 355555555555555444333333455555555555
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.53 E-value=0.0095 Score=33.03 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=9.1
Q ss_pred ccccEEEeeccccCHHHHHHH
Q 007586 510 TSLRYLWVQGYRASKDGRDIL 530 (597)
Q Consensus 510 ~~L~~L~l~~~~i~~~~~~~l 530 (597)
++|+.|+|++|+|+++|++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 344445555444444444444
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.35 E-value=0.015 Score=32.20 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=12.7
Q ss_pred CCCCCEEEeecCCCcHHHHHHHH
Q 007586 484 CPNLRKLEMRGCSFSEYALAAAV 506 (597)
Q Consensus 484 ~~~L~~L~l~~~~i~~~~~~~l~ 506 (597)
+++|+.|+|++|.|+++++..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35666666666666666666553
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.004 Score=57.04 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=18.0
Q ss_pred HHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC
Q 007586 453 GYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS 496 (597)
Q Consensus 453 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 496 (597)
..++..+|+|++|+++.|++.+..-..-.+.+.+|..|++.+|.
T Consensus 84 ~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 84 EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred eehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 33333445555555554444332111111233444445555444
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.77 E-value=0.019 Score=50.49 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=51.6
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
...++|+.+.-..... ..+++.|..|.|..|.|++.+.. +....++|+.|.+.++.+ ....++..+. .|
T Consensus 44 ~d~iDLtdNdl~~l~~----lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi--~~l~dl~pLa-~~ 112 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN----LPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSI--QELGDLDPLA-SC 112 (233)
T ss_pred cceecccccchhhccc----CCCccccceEEecCCcceeeccc----hhhhccccceEEecCcch--hhhhhcchhc-cC
Confidence 5566666553222111 23467788888888888766532 334456888888887765 2334455554 58
Q ss_pred CCCcEEEecCCCc
Q 007586 220 RSLSSVKINDCEL 232 (597)
Q Consensus 220 ~~L~~L~L~~~~~ 232 (597)
|+|++|.+-+++.
T Consensus 113 p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 113 PKLEYLTLLGNPV 125 (233)
T ss_pred CccceeeecCCch
Confidence 8999998888763
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.31 E-value=0.054 Score=55.48 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=108.0
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhc-ccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNR-GKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELAL 189 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~-~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 189 (597)
.+.++.|++..+.+++-.. ..... ++ |+.|++++.. +.. ++.-...+++|+.|++++|.+.+... ...
T Consensus 115 ~~~l~~L~l~~n~i~~i~~--~~~~~~~n-L~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~-----~~~ 183 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPP--LIGLLKSN-LKELDLSDNK-IES--LPSPLRNLPNLKNLDLSFNDLSDLPK-----LLS 183 (394)
T ss_pred ccceeEEecCCcccccCcc--ccccchhh-cccccccccc-hhh--hhhhhhccccccccccCCchhhhhhh-----hhh
Confidence 3678999998886654322 11223 26 9999988763 221 22234678999999999998765432 111
Q ss_pred hCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhh
Q 007586 190 YNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSI 269 (597)
Q Consensus 190 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l 269 (597)
..+.|+.|+++.+....+... ......|++|.++++..............+..+.+...
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~-----~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n---------------- 242 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPE-----IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN---------------- 242 (394)
T ss_pred hhhhhhheeccCCccccCchh-----hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc----------------
Confidence 556899999998876534332 12334588888888854444444444445555443211
Q ss_pred hhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC
Q 007586 270 CRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV 325 (597)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~ 325 (597)
....++......+++++|++++|.+.+... .....+|+.|+++++
T Consensus 243 --------~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 243 --------KLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred --------eeeeccchhccccccceecccccccccccc---ccccCccCEEeccCc
Confidence 011113445567789999999999766544 347789999999864
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.15 E-value=0.0077 Score=61.98 Aligned_cols=80 Identities=25% Similarity=0.275 Sum_probs=39.9
Q ss_pred HcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHH-H
Q 007586 161 RSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNF-F 239 (597)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~ 239 (597)
..+++|++|++++|.|+.... +.. ++.|+.|++++|.+..+. .+ ..+++|+.++++++.+..+... .
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~--l~~----l~~L~~L~l~~N~i~~~~--~~----~~l~~L~~l~l~~n~i~~ie~~~~ 182 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEG--LST----LTLLKELNLSGNLISDIS--GL----ESLKSLKLLDLSYNRIVDIENDEL 182 (414)
T ss_pred hhhhcchheeccccccccccc--hhh----ccchhhheeccCcchhcc--CC----ccchhhhcccCCcchhhhhhhhhh
Confidence 345666666666666554322 222 224666666666542111 11 1145566666666655544442 3
Q ss_pred hhcccchhccCCC
Q 007586 240 QIATALEEFCGGS 252 (597)
Q Consensus 240 ~~~~~L~~L~l~~ 252 (597)
.....++.+.++.
T Consensus 183 ~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 183 SELISLEELDLGG 195 (414)
T ss_pred hhccchHHHhccC
Confidence 4445555555543
No 72
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.69 E-value=0.079 Score=30.58 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=11.8
Q ss_pred cccEEEeeccccCHHHHHHHHh
Q 007586 511 SLRYLWVQGYRASKDGRDILRM 532 (597)
Q Consensus 511 ~L~~L~l~~~~i~~~~~~~l~~ 532 (597)
+|++|+|++|.++++|...+++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHH
Confidence 4555555555555555555544
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.40 E-value=0.1 Score=30.07 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=13.4
Q ss_pred CCCCEEEeecCCCcHHHHHHHHH
Q 007586 485 PNLRKLEMRGCSFSEYALAAAVM 507 (597)
Q Consensus 485 ~~L~~L~l~~~~i~~~~~~~l~~ 507 (597)
++|++|+|++|.|++.+..++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 35566666666666666555543
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.10 E-value=0.073 Score=43.88 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=19.3
Q ss_pred HHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeeccc
Q 007586 159 VSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTD 203 (597)
Q Consensus 159 l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 203 (597)
+....|.++.|++.+|++.+...+ ....+.|+.|+++.|.
T Consensus 72 ft~kf~t~t~lNl~~neisdvPeE-----~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 72 FTIKFPTATTLNLANNEISDVPEE-----LAAMPALRSLNLRFNP 111 (177)
T ss_pred HhhccchhhhhhcchhhhhhchHH-----HhhhHHhhhcccccCc
Confidence 333445555666666655544322 1123355555555544
No 75
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.95 E-value=0.065 Score=52.91 Aligned_cols=36 Identities=14% Similarity=0.362 Sum_probs=32.8
Q ss_pred CCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhc
Q 007586 12 SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDA 49 (597)
Q Consensus 12 ~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~ 49 (597)
.+||+ |++..|..+|+...|+.+.+.|||.||..+.
T Consensus 5 s~Lp~--dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPE--ELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCH--HHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 35999 9999999999778899999999999998864
No 76
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.70 E-value=0.079 Score=50.13 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=31.8
Q ss_pred CCC----ChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcc
Q 007586 13 GMP----DIDTVFECVIPYVEDPKDRDAISLVCRRWYELDAT 50 (597)
Q Consensus 13 ~LP----~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~ 50 (597)
-|| + +|.+.||+|| +..+++.|-+|||+|+++...
T Consensus 77 ~lP~~gl~--hi~e~ilsyl-d~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 77 ALPEQGLD--HIAENILSYL-DALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred hcccccHH--HHHHHHHHhc-chhhhhHHHHHHHHHHHHhcc
Confidence 388 8 9999999999 999999999999999998643
No 77
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.60 E-value=0.1 Score=46.07 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=56.9
Q ss_pred hCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHH-HHHHHhCCCCCCEEEeecCCCcHHHHHHHH--
Q 007586 430 MGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEG-LIAFSRGCPNLRKLEMRGCSFSEYALAAAV-- 506 (597)
Q Consensus 430 ~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~-- 506 (597)
..++.|..|.+. .+.|+.-.. .+...+|+|+.|.+.+|.|-.-+ +..++ .||+|+.|.+-+|+++...-....
T Consensus 61 p~l~rL~tLll~--nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 61 PHLPRLHTLLLN--NNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCccccceEEec--CCcceeecc-chhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccCceeEEE
Confidence 455668888884 224544322 23346788888888888774443 33444 788999999988887665433221
Q ss_pred HccccccEEEeeccc
Q 007586 507 MQLTSLRYLWVQGYR 521 (597)
Q Consensus 507 ~~~~~L~~L~l~~~~ 521 (597)
-.+|+|+.||+++-.
T Consensus 137 ~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcceEeehhhhh
Confidence 235888888887765
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.43 E-value=0.32 Score=48.83 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=29.6
Q ss_pred hCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCC
Q 007586 110 SFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEES 174 (597)
Q Consensus 110 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 174 (597)
.++++++|++++|.++.-. .+|.+|++|.+++|..++. ++... .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP------~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP------VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccC------CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCc
Confidence 3577777777776443211 1333477777777655432 11111 245677777666
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.10 E-value=0.11 Score=42.94 Aligned_cols=64 Identities=16% Similarity=-0.001 Sum_probs=34.2
Q ss_pred HHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccc
Q 007586 454 YVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 454 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 521 (597)
.+....|.++.|+++.|.+++...+ ++ .++.|+.|+++.|++... ++-++. +.+|-.|+..++.
T Consensus 71 kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N~l~~~-p~vi~~-L~~l~~Lds~~na 134 (177)
T KOG4579|consen 71 KFTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFNPLNAE-PRVIAP-LIKLDMLDSPENA 134 (177)
T ss_pred HHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccCccccc-hHHHHH-HHhHHHhcCCCCc
Confidence 3443555666666666666665544 33 566666666666665322 111222 4555555555554
No 80
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=89.96 E-value=0.16 Score=47.78 Aligned_cols=36 Identities=33% Similarity=0.618 Sum_probs=30.3
Q ss_pred CCCCChHHHHHHhcccC----CChhhhhHHHHhhHHHHHhhc
Q 007586 12 SGMPDIDTVFECVIPYV----EDPKDRDAISLVCRRWYELDA 49 (597)
Q Consensus 12 ~~LP~~~eil~~If~~L----~~~~d~~~~~~vcr~W~~~~~ 49 (597)
..||| ||+..||... .+.+++.++++|||.|+..++
T Consensus 108 ~~LPd--EvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 108 SVLPD--EVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhCCH--HHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 45999 9999999853 267999999999999998764
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.56 E-value=0.91 Score=46.56 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=58.7
Q ss_pred HHHHhcCCCCCEEEccccCC-CHHHHHHHHhCCCCCCEEEeecC--CC-cHHHHHHHHHccccccEEEeeccccCH----
Q 007586 453 GYVGQYSLNVRWMLLGCVGE-TDEGLIAFSRGCPNLRKLEMRGC--SF-SEYALAAAVMQLTSLRYLWVQGYRASK---- 524 (597)
Q Consensus 453 ~~l~~~~~~L~~L~l~~~~i-~~~~~~~l~~~~~~L~~L~l~~~--~i-~~~~~~~l~~~~~~L~~L~l~~~~i~~---- 524 (597)
+.+....|.+..++|++|++ .-+++..+.+..|+|+.|+|++| .+ ++..+..+ +...|++|.+.||++..
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhh
Confidence 44555677888888887776 45566677777788888888888 33 33333322 24678888888887322
Q ss_pred --HHHHHHHhhCCCcEEEEcCCCCC
Q 007586 525 --DGRDILRMVRPFWNIELIPPRLV 547 (597)
Q Consensus 525 --~~~~~l~~~~~~~~l~~~~~~~~ 547 (597)
+-+..+.+.+|. +..+|+..+
T Consensus 289 ~s~yv~~i~~~FPK--L~~LDG~ev 311 (585)
T KOG3763|consen 289 RSEYVSAIRELFPK--LLRLDGVEV 311 (585)
T ss_pred hHHHHHHHHHhcch--heeecCccc
Confidence 235666677775 566665443
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.58 E-value=0.96 Score=45.50 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=18.8
Q ss_pred cccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCc
Q 007586 136 RGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESS 175 (597)
Q Consensus 136 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 175 (597)
+++ +++|++++| .++. ++ ..-++|++|.+.+|.
T Consensus 51 ~~~-l~~L~Is~c-~L~s--LP---~LP~sLtsL~Lsnc~ 83 (426)
T PRK15386 51 ARA-SGRLYIKDC-DIES--LP---VLPNELTEITIENCN 83 (426)
T ss_pred hcC-CCEEEeCCC-CCcc--cC---CCCCCCcEEEccCCC
Confidence 355 777888777 3332 22 112357777777664
No 83
>PF13013 F-box-like_2: F-box-like domain
Probab=84.64 E-value=0.81 Score=36.50 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.8
Q ss_pred CCCCCChHHHHHHhcccCCChhhhhHHHHhhH--HHHH
Q 007586 11 NSGMPDIDTVFECVIPYVEDPKDRDAISLVCR--RWYE 46 (597)
Q Consensus 11 ~~~LP~~~eil~~If~~L~~~~d~~~~~~vcr--~W~~ 46 (597)
-.|||+ ||+..||.|. ...++..+...|+ +|++
T Consensus 22 l~DLP~--ELl~~I~~~C-~~~~l~~l~~~~~~~r~~r 56 (109)
T PF13013_consen 22 LLDLPW--ELLQLIFDYC-NDPILLALSRTCRAYRSWR 56 (109)
T ss_pred hhhChH--HHHHHHHhhc-CcHHHHHHHHHHHHHHHHH
Confidence 356999 9999999999 8899988888888 5543
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.57 E-value=0.72 Score=22.97 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=4.4
Q ss_pred CCCEEEeecCC
Q 007586 486 NLRKLEMRGCS 496 (597)
Q Consensus 486 ~L~~L~l~~~~ 496 (597)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44455555544
No 85
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.50 E-value=0.29 Score=50.25 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=19.1
Q ss_pred CCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC
Q 007586 292 LKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV 325 (597)
Q Consensus 292 L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~ 325 (597)
|..||+|.|++....+. +.++..|++|.|.++
T Consensus 213 Li~lDfScNkis~iPv~--fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVD--FRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeecccCceeecchh--hhhhhhheeeeeccC
Confidence 66777777665543322 235667777777665
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.24 E-value=0.89 Score=48.00 Aligned_cols=37 Identities=24% Similarity=0.530 Sum_probs=32.9
Q ss_pred CCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcccc
Q 007586 13 GMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTR 52 (597)
Q Consensus 13 ~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~ 52 (597)
.||. |+..+||.|| +.+++..+++||+.|+.+.....
T Consensus 110 ~lp~--el~~~il~~L-d~~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 110 LLPS--ELSLHILSFL-DGRDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred cccc--hhcccccccC-CHHHhhhhhhhcchhhhhhhccc
Confidence 4999 9999999999 88999999999999998864333
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.03 E-value=3.9 Score=42.20 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=18.8
Q ss_pred HHhCCCCcEEEecCCccC-hHHHHHHHHhcccCccEEEecCC
Q 007586 108 AASFNSLKSIHFRRMIVR-DSDLEVLAKNRGKNLLVLKLDKC 148 (597)
Q Consensus 108 ~~~~~~L~~L~L~~~~i~-~~~l~~l~~~~~~~L~~L~L~~~ 148 (597)
..+.|.+..++|++|.+. -+.+..++...|+ |+.|+|+.+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apk-lk~L~LS~N 254 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPK-LKTLDLSHN 254 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcch-hheeecccc
Confidence 334455555555555322 2233444444455 555555544
No 88
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=74.37 E-value=1.3 Score=45.54 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=39.7
Q ss_pred cCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHH
Q 007586 162 SCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLV 236 (597)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~ 236 (597)
.+..++.+++..+.+... ..-...+.+|+.|++..+.+..+ ......+++|++|+++++.+..+.
T Consensus 70 ~l~~l~~l~l~~n~i~~~-----~~~l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i~ 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-----LNHLSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKLE 134 (414)
T ss_pred HhHhHHhhccchhhhhhh-----hcccccccceeeeeccccchhhc-----ccchhhhhcchheecccccccccc
Confidence 355666777777665431 11123456888888887765322 222346788999999888765444
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=71.96 E-value=2 Score=22.96 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=9.6
Q ss_pred cccEEEeeccccC
Q 007586 511 SLRYLWVQGYRAS 523 (597)
Q Consensus 511 ~L~~L~l~~~~i~ 523 (597)
+|++|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4778888888765
No 90
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=70.97 E-value=0.8 Score=47.17 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=18.0
Q ss_pred ccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcc
Q 007586 193 VLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELL 233 (597)
Q Consensus 193 ~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~ 233 (597)
.|.+||+++|++.. +..-++++..|++|.|.+|++-
T Consensus 212 pLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 212 PLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ceeeeecccCceee-----cchhhhhhhhheeeeeccCCCC
Confidence 45556666655431 1222344555666666655543
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=51.12 E-value=15 Score=20.37 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=9.9
Q ss_pred CCCCeEecCCCccccc
Q 007586 164 RQLRTLFLEESSIFEK 179 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~ 179 (597)
++|++|+|.+|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4567777777765443
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=51.12 E-value=15 Score=20.37 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=9.9
Q ss_pred CCCCeEecCCCccccc
Q 007586 164 RQLRTLFLEESSIFEK 179 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~ 179 (597)
++|++|+|.+|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4567777777765443
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=43.74 E-value=16 Score=20.64 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=9.9
Q ss_pred ccccEEEeeccccC
Q 007586 510 TSLRYLWVQGYRAS 523 (597)
Q Consensus 510 ~~L~~L~l~~~~i~ 523 (597)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777764
No 94
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=41.24 E-value=15 Score=34.13 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhc
Q 007586 11 NSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDA 49 (597)
Q Consensus 11 ~~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~ 49 (597)
-.+||. |++..|+..|++.+|+..+++|-.....+..
T Consensus 202 l~dLP~--e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 202 LHDLPL--ECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred cccchH--HHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 367999 9999999999999999999998776666553
No 95
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=36.96 E-value=93 Score=30.37 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=53.7
Q ss_pred HHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcC---CCCCEEEccccCCCHH---HHHHHHhCCCCCCEEEeecCCC
Q 007586 424 GVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYS---LNVRWMLLGCVGETDE---GLIAFSRGCPNLRKLEMRGCSF 497 (597)
Q Consensus 424 ~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~i 497 (597)
.+..+-.+-+.|+...+.. ..+|+...+..+...+ ...+...+...+.+|. ++..+..-++.|+.|++++|.|
T Consensus 189 ~leri~~nd~~l~evnlnn-~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNN-IRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFI 267 (353)
T ss_pred HHHHHhcCCCCceeeeccc-cccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccccc
Confidence 3344444556677777732 2267776666665433 3455555555555444 3444555678999999999999
Q ss_pred cHHHHHHHHHcc
Q 007586 498 SEYALAAAVMQL 509 (597)
Q Consensus 498 ~~~~~~~l~~~~ 509 (597)
|+.++.++...+
T Consensus 268 tg~gi~a~~~al 279 (353)
T KOG3735|consen 268 TGLGIMALLRAL 279 (353)
T ss_pred ccHHHHHHHHHH
Confidence 999888887544
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=33.22 E-value=94 Score=30.34 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=11.4
Q ss_pred CCCcEEEecCC-ccChHHHHHHHH
Q 007586 112 NSLKSIHFRRM-IVRDSDLEVLAK 134 (597)
Q Consensus 112 ~~L~~L~L~~~-~i~~~~l~~l~~ 134 (597)
++++..+++++ .+....+..+..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~e 221 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSE 221 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHH
Confidence 55555555555 444444444433
No 97
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=27.52 E-value=36 Score=26.58 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.2
Q ss_pred CCCCCChHHHHHHhcccCCChhhhhHH
Q 007586 11 NSGMPDIDTVFECVIPYVEDPKDRDAI 37 (597)
Q Consensus 11 ~~~LP~~~eil~~If~~L~~~~d~~~~ 37 (597)
...||. ||-.+|++|| +..|+...
T Consensus 72 w~~LP~--EIk~~Il~~L-~~~dL~~l 95 (97)
T PF09372_consen 72 WNILPI--EIKYKILEYL-SNKDLKKL 95 (97)
T ss_pred hhhCCH--HHHHHHHHcC-CHHHHHHH
Confidence 345999 9999999999 88888653
No 98
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.45 E-value=50 Score=33.80 Aligned_cols=87 Identities=15% Similarity=-0.033 Sum_probs=41.9
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHH--HcCCCCCeEecCCCcccccchhHHHHHh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVS--RSCRQLRTLFLEESSIFEKDGDWLHELA 188 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~--~~~~~L~~L~L~~~~~~~~~~~~l~~l~ 188 (597)
.+.+++++++.+.+.+.....+... .--+.+..| +.+...+..+. ..-..+.+++|+.+...+.... ...+.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p----~~pl~lr~c-~lsskfis~l~~qsg~~~lteldls~n~~Kddip~-~~n~~ 237 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQP----GNPLSLRVC-ELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR-TLNKK 237 (553)
T ss_pred cchhhhhccCCCcccccCCccccCC----CCccchhhh-hhhhhHHHHhhhhhccccccccccccCCCCccchh-HHHHh
Confidence 3567777777777666655444321 111455555 23333333332 1112466777777765443222 12222
Q ss_pred hhCCccceeEeeccc
Q 007586 189 LYNTVLETLNFYMTD 203 (597)
Q Consensus 189 ~~~~~L~~L~l~~~~ 203 (597)
.....++.++.+...
T Consensus 238 a~~~vl~~ld~s~tg 252 (553)
T KOG4242|consen 238 AGTLVLFKLDRSTTG 252 (553)
T ss_pred hhhhhhhcccccccc
Confidence 233355566655443
No 99
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=20.41 E-value=9.2 Score=31.51 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=4.6
Q ss_pred CCcCCcEEEe
Q 007586 431 GCDKLRRFGL 440 (597)
Q Consensus 431 ~~~~L~~L~l 440 (597)
.|++|+.+.+
T Consensus 33 ~~~~l~~i~~ 42 (129)
T PF13306_consen 33 NCTSLKSINF 42 (129)
T ss_dssp T-TT-SEEEE
T ss_pred cccccccccc
Confidence 4555666666
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=20.38 E-value=56 Score=18.48 Aligned_cols=12 Identities=0% Similarity=-0.127 Sum_probs=5.3
Q ss_pred CCCEEEccccCC
Q 007586 461 NVRWMLLGCVGE 472 (597)
Q Consensus 461 ~L~~L~l~~~~i 472 (597)
+|+.|++++|++
T Consensus 3 ~L~~L~vs~N~L 14 (26)
T smart00364 3 SLKELNVSNNQL 14 (26)
T ss_pred ccceeecCCCcc
Confidence 344444444443
Done!