Query 007586
Match_columns 597
No_of_seqs 363 out of 3706
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 100.0 2.5E-63 8.5E-68 537.3 51.9 585 1-587 1-590 (592)
2 2p1m_B Transport inhibitor res 100.0 2.3E-58 7.8E-63 498.7 51.2 563 11-590 6-581 (594)
3 2p1m_B Transport inhibitor res 100.0 6.4E-30 2.2E-34 276.0 37.4 410 67-521 99-542 (594)
4 3ogk_B Coronatine-insensitive 100.0 1.3E-29 4.3E-34 273.5 37.1 416 104-546 65-524 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-28 5.3E-33 256.6 38.7 391 104-539 20-459 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 3.4E-28 1.2E-32 253.9 33.8 380 112-536 3-424 (461)
7 2ast_B S-phase kinase-associat 99.9 9E-26 3.1E-30 225.2 21.4 265 9-348 7-281 (336)
8 3rgz_A Protein brassinosteroid 99.9 2.6E-26 9E-31 253.9 -9.6 91 430-525 415-505 (768)
9 3rgz_A Protein brassinosteroid 99.9 1E-25 3.4E-30 249.3 -6.8 40 485-525 632-671 (768)
10 3t6q_A CD180 antigen; protein- 99.9 3.2E-26 1.1E-30 247.5 -14.4 112 110-233 79-192 (606)
11 3t6q_A CD180 antigen; protein- 99.9 1.3E-24 4.5E-29 234.9 -9.0 279 218-522 276-559 (606)
12 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-24 6.6E-29 233.5 -10.1 57 286-348 281-337 (606)
13 4fmz_A Internalin; leucine ric 99.9 4.3E-21 1.5E-25 192.2 14.7 193 288-523 153-346 (347)
14 2ca6_A RAN GTPase-activating p 99.8 3.6E-20 1.2E-24 188.1 19.3 209 287-537 91-332 (386)
15 1o6v_A Internalin A; bacterial 99.8 3.2E-21 1.1E-25 200.9 10.6 346 70-524 43-389 (466)
16 2ca6_A RAN GTPase-activating p 99.8 2.8E-19 9.4E-24 181.6 22.7 197 282-521 114-341 (386)
17 2ast_B S-phase kinase-associat 99.8 2.3E-19 7.9E-24 178.7 19.8 213 288-524 91-307 (336)
18 3vq2_A TLR4, TOLL-like recepto 99.8 1.5E-22 5.3E-27 218.6 -4.1 64 458-523 471-534 (606)
19 2z81_A CD282 antigen, TOLL-lik 99.8 1.7E-21 5.8E-26 207.9 3.9 131 373-523 332-464 (549)
20 4fmz_A Internalin; leucine ric 99.8 2.2E-19 7.5E-24 179.7 16.8 305 70-498 41-346 (347)
21 2z7x_B TOLL-like receptor 1, v 99.8 8.1E-22 2.8E-26 208.8 -2.9 432 112-597 21-479 (520)
22 1ziw_A TOLL-like receptor 3; i 99.8 6E-22 2.1E-26 216.9 -4.7 132 458-596 428-570 (680)
23 2z81_A CD282 antigen, TOLL-lik 99.8 4.9E-21 1.7E-25 204.3 2.4 89 286-386 168-262 (549)
24 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-20 3.9E-25 200.0 4.4 389 73-523 21-434 (520)
25 2z63_A TOLL-like receptor 4, v 99.8 5.5E-23 1.9E-27 220.6 -13.7 392 73-525 28-485 (570)
26 1o6v_A Internalin A; bacterial 99.8 3.3E-19 1.1E-23 185.7 15.2 326 69-499 64-389 (466)
27 3v47_A TOLL-like receptor 5B a 99.8 2.7E-21 9.2E-26 201.3 -4.0 219 290-525 180-410 (455)
28 1ziw_A TOLL-like receptor 3; i 99.8 6.9E-21 2.4E-25 208.5 -2.7 209 290-525 381-599 (680)
29 2z63_A TOLL-like receptor 4, v 99.8 5.7E-22 2E-26 212.6 -11.8 209 287-524 322-532 (570)
30 3j0a_A TOLL-like receptor 5; m 99.8 3.6E-21 1.2E-25 215.1 -5.9 393 72-523 23-464 (844)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.8E-19 9.7E-24 190.9 5.0 437 112-596 52-507 (562)
32 3j0a_A TOLL-like receptor 5; m 99.8 5.8E-21 2E-25 213.4 -8.7 372 68-497 43-463 (844)
33 3o6n_A APL1; leucine-rich repe 99.7 2.1E-19 7.2E-24 182.8 3.3 322 111-536 44-365 (390)
34 4eco_A Uncharacterized protein 99.7 2.3E-21 8E-26 209.4 -12.4 89 160-252 202-314 (636)
35 3goz_A Leucine-rich repeat-con 99.7 5.2E-17 1.8E-21 163.1 19.3 96 429-526 191-300 (362)
36 4ecn_A Leucine-rich repeat pro 99.7 2.9E-20 9.8E-25 204.5 -5.1 35 458-494 751-785 (876)
37 4eco_A Uncharacterized protein 99.7 7.7E-21 2.6E-25 205.3 -9.7 354 106-523 200-600 (636)
38 4ecn_A Leucine-rich repeat pro 99.7 3.5E-20 1.2E-24 203.8 -4.9 352 107-523 443-840 (876)
39 3v47_A TOLL-like receptor 5B a 99.7 1.9E-19 6.6E-24 187.2 -0.9 87 137-234 30-117 (455)
40 3goz_A Leucine-rich repeat-con 99.7 5.6E-16 1.9E-20 155.6 24.5 43 458-500 251-299 (362)
41 2id5_A Lingo-1, leucine rich r 99.7 5E-19 1.7E-23 185.2 -0.5 226 112-409 32-257 (477)
42 3oja_B Anopheles plasmodium-re 99.7 1.9E-18 6.5E-23 185.5 3.6 321 111-535 50-370 (597)
43 3o6n_A APL1; leucine-rich repe 99.7 3E-18 1E-22 174.3 4.2 323 71-512 43-366 (390)
44 2id5_A Lingo-1, leucine rich r 99.7 1.5E-19 5.2E-24 189.1 -6.1 310 139-532 33-343 (477)
45 3bz5_A Internalin-J, INLJ; leu 99.7 3.6E-18 1.2E-22 176.5 3.4 122 69-231 38-159 (457)
46 3bz5_A Internalin-J, INLJ; leu 99.7 2.3E-17 7.8E-22 170.4 6.9 102 110-234 83-184 (457)
47 3oja_B Anopheles plasmodium-re 99.7 2.3E-17 7.8E-22 177.1 3.3 320 72-509 50-369 (597)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 7.6E-17 2.6E-21 172.1 5.9 419 111-597 30-484 (562)
49 2z80_A TOLL-like receptor 2, v 99.6 2.2E-16 7.7E-21 158.0 3.1 138 373-524 172-315 (353)
50 4g8a_A TOLL-like receptor 4; l 99.6 2.9E-18 1E-22 186.2 -14.2 138 373-523 443-580 (635)
51 1jl5_A Outer protein YOPM; leu 99.6 1.3E-16 4.4E-21 164.7 -2.8 142 72-253 10-163 (454)
52 3un9_A NLR family member X1; l 99.5 1.6E-13 5.5E-18 137.2 17.5 196 289-525 71-285 (372)
53 4g8a_A TOLL-like receptor 4; l 99.5 4.5E-17 1.5E-21 176.9 -10.0 141 68-234 46-187 (635)
54 1jl5_A Outer protein YOPM; leu 99.5 5.6E-16 1.9E-20 159.9 -1.6 181 290-524 215-410 (454)
55 2z80_A TOLL-like receptor 2, v 99.5 3.7E-15 1.3E-19 149.1 4.4 281 111-498 30-314 (353)
56 1xku_A Decorin; proteoglycan, 99.5 5E-16 1.7E-20 154.0 -3.0 290 140-521 33-330 (330)
57 3g06_A SSPH2 (leucine-rich rep 99.5 2.2E-14 7.4E-19 152.7 8.4 266 139-532 41-306 (622)
58 3o53_A Protein LRIM1, AGAP0063 99.5 1.8E-15 6.2E-20 148.8 -1.1 84 432-521 190-273 (317)
59 2ft3_A Biglycan; proteoglycan, 99.5 3E-16 1E-20 155.7 -7.2 289 140-521 35-331 (332)
60 3g06_A SSPH2 (leucine-rich rep 99.5 1.4E-13 4.6E-18 146.6 10.3 105 375-506 201-305 (622)
61 1ogq_A PGIP-2, polygalacturona 99.4 1.9E-16 6.7E-21 155.4 -11.9 84 431-521 219-302 (313)
62 2z66_A Variable lymphocyte rec 99.4 7.9E-16 2.7E-20 150.8 -8.3 37 288-324 99-135 (306)
63 1wwl_A Monocyte differentiatio 99.4 6E-16 2E-20 151.9 -9.2 58 459-524 252-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.4 1.6E-14 5.6E-19 142.0 0.8 248 101-409 23-271 (317)
65 3un9_A NLR family member X1; l 99.4 5E-12 1.7E-16 126.3 18.6 120 111-232 71-195 (372)
66 1xku_A Decorin; proteoglycan, 99.4 1E-14 3.5E-19 144.5 -2.1 292 113-496 32-330 (330)
67 3zyi_A Leucine-rich repeat-con 99.4 1.6E-14 5.5E-19 149.6 -0.9 60 164-231 75-134 (452)
68 3zyj_A Leucine-rich repeat-con 99.4 1.6E-14 5.4E-19 149.1 -1.2 60 164-231 64-123 (440)
69 1ozn_A Reticulon 4 receptor; N 99.4 3.6E-15 1.2E-19 144.5 -6.4 208 289-523 31-238 (285)
70 2z66_A Variable lymphocyte rec 99.4 5.6E-16 1.9E-20 151.9 -12.5 210 287-523 49-261 (306)
71 1ogq_A PGIP-2, polygalacturona 99.4 1E-15 3.6E-20 150.1 -10.7 248 140-496 52-302 (313)
72 2ft3_A Biglycan; proteoglycan, 99.4 3.9E-15 1.3E-19 147.6 -7.2 291 113-496 34-331 (332)
73 3e4g_A ATP synthase subunit S, 99.4 1.1E-12 3.7E-17 113.9 9.0 104 434-541 62-173 (176)
74 3oja_A Leucine-rich immune mol 99.4 3.1E-14 1.1E-18 148.4 -0.9 81 432-518 190-270 (487)
75 4fcg_A Uncharacterized protein 99.3 2.3E-13 8E-18 134.2 3.0 137 71-234 79-220 (328)
76 3zyj_A Leucine-rich repeat-con 99.3 3.3E-14 1.1E-18 146.7 -4.4 39 458-497 253-291 (440)
77 3zyi_A Leucine-rich repeat-con 99.3 3.9E-14 1.3E-18 146.7 -3.9 39 458-497 264-302 (452)
78 1ozn_A Reticulon 4 receptor; N 99.3 1.6E-13 5.5E-18 132.8 -0.3 64 431-498 175-238 (285)
79 3oja_A Leucine-rich immune mol 99.3 1.1E-13 3.9E-18 144.1 -1.9 238 110-408 32-270 (487)
80 4glp_A Monocyte differentiatio 99.3 9.6E-13 3.3E-17 128.9 3.8 58 460-524 251-308 (310)
81 4fcg_A Uncharacterized protein 99.3 1.6E-13 5.3E-18 135.4 -2.2 62 458-521 251-312 (328)
82 1wwl_A Monocyte differentiatio 99.3 5.8E-14 2E-18 137.7 -6.2 208 288-523 41-266 (312)
83 4glp_A Monocyte differentiatio 99.3 1.2E-12 4.1E-17 128.2 2.7 117 111-233 63-182 (310)
84 1h6u_A Internalin H; cell adhe 99.2 1.9E-12 6.3E-17 126.5 3.2 192 288-524 39-231 (308)
85 1h6u_A Internalin H; cell adhe 99.2 1.9E-11 6.5E-16 119.3 9.2 16 162-177 83-98 (308)
86 2ra8_A Uncharacterized protein 99.2 7.9E-11 2.7E-15 116.6 12.7 166 331-541 164-337 (362)
87 1io0_A Tropomodulin; LRR prote 99.1 1.3E-09 4.6E-14 97.3 16.0 129 366-526 27-167 (185)
88 3e4g_A ATP synthase subunit S, 99.1 7.1E-11 2.4E-15 102.4 7.3 103 401-514 62-171 (176)
89 3rfs_A Internalin B, repeat mo 99.1 1.6E-11 5.5E-16 117.6 3.5 175 111-348 40-214 (272)
90 2z62_A TOLL-like receptor 4, v 99.1 4E-12 1.4E-16 122.2 -2.4 37 461-498 201-237 (276)
91 2z62_A TOLL-like receptor 4, v 99.1 2.1E-13 7.3E-18 131.2 -11.8 207 290-524 28-238 (276)
92 2ra8_A Uncharacterized protein 99.1 6.6E-10 2.3E-14 110.0 11.5 100 432-533 192-302 (362)
93 3rfs_A Internalin B, repeat mo 99.0 8.2E-11 2.8E-15 112.7 3.7 191 136-408 40-230 (272)
94 2o6q_A Variable lymphocyte rec 99.0 5E-11 1.7E-15 114.0 1.4 82 140-231 39-120 (270)
95 4ezg_A Putative uncharacterize 99.0 7E-10 2.4E-14 100.5 7.2 150 163-388 43-194 (197)
96 4ezg_A Putative uncharacterize 99.0 3E-10 1E-14 102.9 4.4 85 431-524 110-195 (197)
97 1io0_A Tropomodulin; LRR prote 99.0 1.1E-08 3.7E-13 91.3 14.5 130 100-234 24-165 (185)
98 1h6t_A Internalin B; cell adhe 99.0 1.6E-09 5.6E-14 104.6 9.8 57 163-231 67-123 (291)
99 2o6q_A Variable lymphocyte rec 98.9 1.7E-11 5.8E-16 117.3 -4.7 87 431-522 131-217 (270)
100 1h6t_A Internalin B; cell adhe 98.9 3E-09 1E-13 102.7 9.8 164 111-348 45-209 (291)
101 1m9s_A Internalin B; cell inva 98.9 3.8E-09 1.3E-13 112.2 9.8 102 111-232 42-143 (605)
102 1m9s_A Internalin B; cell inva 98.8 1.9E-09 6.5E-14 114.5 6.2 170 136-389 42-211 (605)
103 1p9a_G Platelet glycoprotein I 98.8 5.1E-10 1.7E-14 108.1 0.9 106 110-233 8-113 (290)
104 1p9a_G Platelet glycoprotein I 98.8 2.2E-10 7.4E-15 110.7 -2.3 78 140-232 12-89 (290)
105 2xwt_C Thyrotropin receptor; s 98.8 1.8E-11 6.2E-16 114.9 -10.3 199 290-521 31-237 (239)
106 2je0_A Acidic leucine-rich nuc 98.8 4.9E-09 1.7E-13 90.1 5.7 81 140-231 19-99 (149)
107 2je0_A Acidic leucine-rich nuc 98.8 4.6E-09 1.6E-13 90.3 4.3 108 286-407 38-147 (149)
108 3m19_A Variable lymphocyte rec 98.7 1.1E-09 3.8E-14 103.4 -0.1 158 164-388 35-192 (251)
109 3m19_A Variable lymphocyte rec 98.7 3.9E-09 1.3E-13 99.6 3.1 63 112-178 35-97 (251)
110 1xeu_A Internalin C; cellular 98.7 2.5E-08 8.4E-13 94.6 8.2 54 289-348 127-181 (263)
111 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 9.1E-09 3.1E-13 70.3 3.2 41 11-54 9-49 (53)
112 2ell_A Acidic leucine-rich nuc 98.7 2.3E-09 7.7E-14 94.3 0.1 90 430-522 68-159 (168)
113 2xwt_C Thyrotropin receptor; s 98.7 8.9E-10 3E-14 103.2 -3.0 13 163-175 54-66 (239)
114 1dce_A Protein (RAB geranylger 98.6 3.5E-10 1.2E-14 119.5 -7.4 119 400-537 441-562 (567)
115 2ell_A Acidic leucine-rich nuc 98.6 1.1E-08 3.8E-13 89.9 3.4 16 162-177 47-62 (168)
116 3sb4_A Hypothetical leucine ri 98.6 2.6E-09 9E-14 105.2 -0.9 127 374-517 201-328 (329)
117 3cvr_A Invasion plasmid antige 98.6 1.9E-08 6.7E-13 105.6 4.5 24 374-397 229-252 (571)
118 2o6s_A Variable lymphocyte rec 98.6 1.6E-08 5.4E-13 92.4 2.4 59 289-348 99-157 (208)
119 1xeu_A Internalin C; cellular 98.6 7.5E-08 2.6E-12 91.3 7.1 80 290-389 106-186 (263)
120 2v70_A SLIT-2, SLIT homolog 2 98.5 2.1E-08 7.1E-13 92.4 2.6 83 140-231 34-116 (220)
121 1pgv_A TMD-1, tropomodulin TMD 98.5 6.9E-07 2.4E-11 78.9 11.9 123 390-521 31-168 (197)
122 3sb4_A Hypothetical leucine ri 98.5 4.8E-09 1.6E-13 103.3 -2.2 114 362-491 213-327 (329)
123 1dce_A Protein (RAB geranylger 98.5 4.4E-09 1.5E-13 111.0 -2.7 36 110-148 347-382 (567)
124 2xot_A Amphoterin-induced prot 98.4 4.6E-08 1.6E-12 97.6 0.9 13 113-125 40-52 (361)
125 2xot_A Amphoterin-induced prot 98.4 9.6E-08 3.3E-12 95.3 2.6 62 162-231 62-123 (361)
126 1ds9_A Outer arm dynein; leuci 98.4 4.7E-08 1.6E-12 88.4 0.3 132 373-524 46-186 (198)
127 3cvr_A Invasion plasmid antige 98.4 5.6E-07 1.9E-11 94.5 8.5 161 112-326 80-241 (571)
128 1a9n_A U2A', U2A'; complex (nu 98.4 3.1E-07 1.1E-11 81.2 5.6 12 165-176 43-54 (176)
129 1ds9_A Outer arm dynein; leuci 98.4 1.1E-07 3.7E-12 86.0 2.4 62 160-232 44-105 (198)
130 2v9t_B SLIT homolog 2 protein 98.3 9.7E-08 3.3E-12 87.8 1.6 82 140-231 34-115 (220)
131 1pgv_A TMD-1, tropomodulin TMD 98.3 4.8E-06 1.6E-10 73.5 12.2 133 100-233 29-170 (197)
132 1a9n_A U2A', U2A'; complex (nu 98.3 2.1E-07 7E-12 82.3 3.3 14 163-176 87-100 (176)
133 3e6j_A Variable lymphocyte rec 98.3 2.7E-07 9.3E-12 85.4 4.2 61 163-231 63-123 (229)
134 3e6j_A Variable lymphocyte rec 98.3 2.2E-07 7.4E-12 86.1 3.3 61 164-232 40-100 (229)
135 2o6s_A Variable lymphocyte rec 98.3 2.3E-08 7.7E-13 91.3 -3.6 36 373-409 50-85 (208)
136 2v9t_B SLIT homolog 2 protein 98.3 2.2E-08 7.5E-13 92.2 -3.8 96 431-531 78-174 (220)
137 2v70_A SLIT-2, SLIT homolog 2 98.3 2.1E-07 7.3E-12 85.5 2.4 62 164-232 32-93 (220)
138 4b8c_D Glucose-repressible alc 98.1 2.9E-07 1E-11 100.3 -1.9 19 216-234 220-238 (727)
139 4ay9_X Follicle-stimulating ho 98.0 7.9E-08 2.7E-12 95.5 -7.0 18 286-303 100-117 (350)
140 1w8a_A SLIT protein; signaling 98.0 1.9E-06 6.4E-11 77.3 1.9 17 162-178 52-68 (192)
141 4ay9_X Follicle-stimulating ho 97.9 8.1E-08 2.8E-12 95.4 -8.7 16 373-388 200-215 (350)
142 2o6r_A Variable lymphocyte rec 97.8 1.1E-05 3.9E-10 71.0 4.7 14 164-177 28-41 (177)
143 1w8a_A SLIT protein; signaling 97.8 7.2E-06 2.5E-10 73.4 3.2 60 165-231 30-89 (192)
144 2wfh_A SLIT homolog 2 protein 97.8 1.7E-05 5.6E-10 71.0 5.0 15 163-177 53-67 (193)
145 2wfh_A SLIT homolog 2 protein 97.8 1.6E-05 5.3E-10 71.2 4.7 14 218-231 52-65 (193)
146 2o6r_A Variable lymphocyte rec 97.8 1.5E-05 5.1E-10 70.2 4.4 84 137-231 28-111 (177)
147 4b8c_D Glucose-repressible alc 97.7 1.8E-05 6.3E-10 86.1 5.4 113 160-306 220-332 (727)
148 3g39_A Variable lymphocyte rec 97.5 9.2E-05 3.2E-09 64.6 5.5 36 192-231 30-65 (170)
149 3l2o_B F-box only protein 4; s 97.5 2.6E-05 8.8E-10 72.2 1.3 40 13-55 7-46 (312)
150 2e31_A FBS1, F-box only protei 97.5 2.4E-05 8.1E-10 73.5 1.0 36 12-50 52-88 (297)
151 4fdw_A Leucine rich hypothetic 97.5 3E-06 1E-10 85.3 -5.6 60 458-521 321-381 (401)
152 2r9u_A Variable lymphocyte rec 97.4 0.00013 4.4E-09 63.9 5.3 36 192-231 33-68 (174)
153 3g39_A Variable lymphocyte rec 97.3 1.5E-05 5.1E-10 69.7 -2.3 86 433-523 30-115 (170)
154 2r9u_A Variable lymphocyte rec 97.3 1.8E-05 6.2E-10 69.4 -2.3 86 433-523 33-118 (174)
155 4fdw_A Leucine rich hypothetic 97.1 4.9E-06 1.7E-10 83.7 -9.2 83 430-521 268-356 (401)
156 3rw6_A Nuclear RNA export fact 97.0 0.00051 1.7E-08 64.1 4.2 57 458-516 194-257 (267)
157 4fs7_A Uncharacterized protein 96.9 8.2E-05 2.8E-09 74.9 -1.7 60 430-495 317-376 (394)
158 3rw6_A Nuclear RNA export fact 96.9 0.0017 5.9E-08 60.5 7.4 42 161-204 167-208 (267)
159 1p22_A F-BOX/WD-repeat protein 96.9 0.00022 7.4E-09 72.8 1.0 40 9-52 10-53 (435)
160 4fs7_A Uncharacterized protein 96.8 1.5E-05 5E-10 80.4 -8.7 82 429-520 293-376 (394)
161 3v7d_B Cell division control p 96.7 0.00058 2E-08 70.1 2.5 35 13-50 17-51 (464)
162 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.00053 1.8E-08 70.1 1.3 36 12-50 20-55 (445)
163 2ifg_A High affinity nerve gro 96.2 0.00027 9.1E-09 69.7 -3.2 63 458-523 54-116 (347)
164 2ifg_A High affinity nerve gro 95.8 0.0049 1.7E-07 60.5 3.8 62 162-231 29-91 (347)
165 4gt6_A Cell surface protein; l 95.5 0.0004 1.4E-08 69.8 -5.6 83 429-521 307-389 (394)
166 4gt6_A Cell surface protein; l 95.4 0.0022 7.6E-08 64.3 -0.5 82 430-521 285-368 (394)
167 4h09_A Hypothetical leucine ri 76.5 1.8 6E-05 42.5 3.9 35 190-229 215-249 (379)
168 3rfe_A Platelet glycoprotein I 68.9 1.3 4.4E-05 35.8 0.7 35 461-496 32-66 (130)
169 3rfe_A Platelet glycoprotein I 63.1 1.2 4.2E-05 36.0 -0.6 46 485-531 31-77 (130)
170 4h09_A Hypothetical leucine ri 55.4 1.2 4E-05 43.9 -2.4 79 431-518 261-341 (379)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.5e-63 Score=537.27 Aligned_cols=585 Identities=71% Similarity=1.181 Sum_probs=503.4
Q ss_pred Cccchhhc--ccCCCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcccccEEEEccccccChhhHHHhcCCceEE
Q 007586 1 MEEDKKVN--KMNSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESL 78 (597)
Q Consensus 1 ~~~~~~~~--~~~~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L 78 (597)
|++++..+ .+..+||+ |+|.+||+||++.+|+.++++|||+|+.+..+.+..+.+.+++...+..+..+++++++|
T Consensus 1 m~~~~~~r~~~~~~~LPd--eil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L 78 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVD--DVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSL 78 (592)
T ss_dssp -----------CCCCCGG--GTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEE
T ss_pred CCChhhhhHhhccCCCCH--HHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEE
Confidence 66544433 24467999 999999999977999999999999999999888899999988888899999999999999
Q ss_pred EeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHH
Q 007586 79 KLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLH 158 (597)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~ 158 (597)
++++++.+.+++++|..|+++..+|+..+...+++|++|+|+++.+++..+..++..+|.+|++|++++|.++++.++..
T Consensus 79 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~ 158 (592)
T 3ogk_B 79 KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS 158 (592)
T ss_dssp EEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH
T ss_pred EecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888665459999999998788888888
Q ss_pred HHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHH
Q 007586 159 VSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNF 238 (597)
Q Consensus 159 l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 238 (597)
+..+|++|++|+|++|.+++.+..|+..++..+++|++|+++++....++...+..+..+|++|++|++++|....++..
T Consensus 159 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 88899999999999999999999999999999999999999998876677889999999999999999999998889999
Q ss_pred HhhcccchhccCCCCCCCc---chhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCC
Q 007586 239 FQIATALEEFCGGSFNHPP---EKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCP 315 (597)
Q Consensus 239 ~~~~~~L~~L~l~~~~~~~---~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~ 315 (597)
+...++|++|.++.+.... ..+..+..+..+...+++......++.+...+++|++|+|++|.+++.++..+...++
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 9999999999997654331 2233333344444445555666778888889999999999999999998888888999
Q ss_pred CCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHH
Q 007586 316 NLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECI 395 (597)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l 395 (597)
+|++|++.+++.+.++..+...|++|++|++++++.++...+.|+.+++.++..+...|++|++|+++++.+++.++..+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 99999999888899999999999999999999423333333446789999999888899999999999999999999999
Q ss_pred HHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHH
Q 007586 396 GANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDE 475 (597)
Q Consensus 396 ~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 475 (597)
+..+++|++|++.+++.++.+++.+.+.|+..++.+|++|++|+++.|.+.+++.++..++..+++|+.|++++|.+++.
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 99999999999998776788888888889999999999999999987655799999999998899999999999999999
Q ss_pred HHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHHHHHHHHhhCCCcEEEEcCCCCCCCCCCCCC
Q 007586 476 GLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGN 555 (597)
Q Consensus 476 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 555 (597)
++..+..+|++|+.|++++|.+++.++..++..+++|++|++++|++++.|++.+++.+|.++++.++.+...+.++.+.
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~ 558 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGE 558 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC----------
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccC
Confidence 99999989999999999999999999999998899999999999999999999999999999999998665444445556
Q ss_pred cccccccceeEEEeeccCCCCCCCCcccccCC
Q 007586 556 PIVIEHPAHILAYYSLAGQRTDFPETVRPLDT 587 (597)
Q Consensus 556 ~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 587 (597)
..+....+++|.|++++|||.++|++|++++.
T Consensus 559 ~~~~~~~~~~~~~~~~~g~~~~~p~~~~~l~~ 590 (592)
T 3ogk_B 559 IREMEHPAHILAYYSLAGQRTDCPTTVRVLKE 590 (592)
T ss_dssp -----CCCEEEEEECTTCSCSCCCTTCEECCS
T ss_pred CcCCcchhheEeeeecCCCccCCCCCeEecCC
Confidence 66777789999999999999999999999864
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.3e-58 Score=498.74 Aligned_cols=563 Identities=34% Similarity=0.592 Sum_probs=484.8
Q ss_pred CCCCCChHHHHHHhcccCCC-hhhhhHHHHhhHHHHHhhcccccEEEEccccccChhhHHHhcCCceEEEeeCCCccccc
Q 007586 11 NSGMPDIDTVFECVIPYVED-PKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMF 89 (597)
Q Consensus 11 ~~~LP~~~eil~~If~~L~~-~~d~~~~~~vcr~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 89 (597)
..+||+ |||.+||+|| + .+|+.++++|||+|+++..+.+..+.+..++...+..+..+++++++|++++++.+.++
T Consensus 6 ~~~LPd--evL~~If~~L-~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 6 ALSFPE--EVLEHVFSFI-QLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp ----CH--HHHHHHHHTC-CCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred hhhCCH--HHHHHHHhhc-CCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 345999 9999999999 6 99999999999999999888888888888888889999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeE
Q 007586 90 NLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTL 169 (597)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L 169 (597)
++.|..|++...+|+..+...+++|++|+++++.+++..+..+...+++ |++|++++|..+++.++..+..+|++|++|
T Consensus 83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 161 (594)
T 2p1m_B 83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKEL 161 (594)
T ss_dssp TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTT-CCEEEEESCEEEEHHHHHHHHHHCTTCCEE
T ss_pred ccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCC-CcEEeCCCcCCCCHHHHHHHHHhCCCCCEE
Confidence 9999999999999999999999999999999999999999999878898 999999999888888888988899999999
Q ss_pred ecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCC-CcccHHHHHhhcccchhc
Q 007586 170 FLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDC-ELLDLVNFFQIATALEEF 248 (597)
Q Consensus 170 ~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~~~~~~L~~L 248 (597)
+|++|.+++.+..++..+...+++|++|+++++. ..++...+..+..++++|++|++++| ...+++.++..+++|++|
T Consensus 162 ~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp ECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred eCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 9999999888888888888889999999999886 34888899999889999999999998 455677888889999999
Q ss_pred cCCCCCCCc---------chhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCE
Q 007586 249 CGGSFNHPP---------EKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEI 319 (597)
Q Consensus 249 ~l~~~~~~~---------~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~ 319 (597)
+++.+.... ..+..++.+..+ .+++......++.+...+++|++|+|++|.+++.++..+...+++|++
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L--s~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCL--SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEE--ECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccc--cCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence 987664321 122333333322 155666667788888889999999999999999988888889999999
Q ss_pred EEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhc
Q 007586 320 LETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANL 399 (597)
Q Consensus 320 L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 399 (597)
|++.++.++.++..+...+++|++|++.++...+ ...|..+++.++..+...+++|++|.+.++.+++.++..++..+
T Consensus 319 L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g--~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~ 396 (594)
T 2p1m_B 319 LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV--MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR 396 (594)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTC--SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred EeCcCccCHHHHHHHHHhCCCCCEEEEecCcccc--cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC
Confidence 9999988888899998899999999995421000 01167899999999888899999999999999999999999889
Q ss_pred cCcccceecccC--ccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHH
Q 007586 400 RNLCDFRLVLLD--REEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGL 477 (597)
Q Consensus 400 ~~L~~L~l~~~~--~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 477 (597)
++|+.|++..++ .|..++..+.+.++..++..|++|++|++ ++.+++.++..++..+++|+.|++++|.+++.++
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L---~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL---SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC---CSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee---cCcccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 999999999332 46788877778999999999999999999 7799999999999779999999999999999999
Q ss_pred HHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHHHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCcc
Q 007586 478 IAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPI 557 (597)
Q Consensus 478 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 557 (597)
..+..+|++|+.|++++|.+++.++..++..+++|+.|++++|++++.+++.+++.+|.++++.+..+.. .+..+
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~-----~~~~~ 548 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA-----PDSRP 548 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC-----GGGSC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc-----ccccc
Confidence 9998889999999999999999999988888999999999999999999999999999999999874331 11123
Q ss_pred cccccceeEEEeeccCCCCCCCCcccccCCCCc
Q 007586 558 VIEHPAHILAYYSLAGQRTDFPETVRPLDTESL 590 (597)
Q Consensus 558 ~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~ 590 (597)
.....+.++.|++.+|||.+.|++++++++...
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 581 (594)
T 2p1m_B 549 ESCPVERVFIYRTVAGPRFDMPGFVWNMDQDST 581 (594)
T ss_dssp TTSBCSEEEEEECSSCSCSCCCTTEEEC-----
T ss_pred ccchhhhhhhhhccCCCCCCCCCceEeccCCCC
Confidence 556678899999999999999999999987643
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.98 E-value=6.4e-30 Score=276.00 Aligned_cols=410 Identities=17% Similarity=0.136 Sum_probs=323.2
Q ss_pred hHHHhcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCC-ccChHHHHHHHHhcccCccEEEe
Q 007586 67 RLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRM-IVRDSDLEVLAKNRGKNLLVLKL 145 (597)
Q Consensus 67 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~~L~~L~L 145 (597)
.+...+++|++|+++++. +....+..+.+.+++|++|++++| .+++..+..+...+++ |++|++
T Consensus 99 ~l~~~~~~L~~L~L~~~~--------------~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-L~~L~L 163 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMV--------------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN-LKELDL 163 (594)
T ss_dssp HHHHHCTTCCEEEEESCB--------------CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTT-CCEEEC
T ss_pred HHHHhCCCCCeEEeeCcE--------------EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCC-CCEEeC
Confidence 456789999999999763 224456667768999999999999 7888888888888998 999999
Q ss_pred cCCCCCCh---HHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCC
Q 007586 146 DKCCGFST---DGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSL 222 (597)
Q Consensus 146 ~~~~~~~~---~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 222 (597)
++|. +++ ..+..+...+++|++|++++|. ...+...+..+...+++|++|+++++. ....+..+..++++|
T Consensus 164 ~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~----~~~~l~~~~~~~~~L 237 (594)
T 2p1m_B 164 RESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAV----PLEKLATLLQRAPQL 237 (594)
T ss_dssp TTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTS----CHHHHHHHHHHCTTC
T ss_pred cCCc-cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCC----cHHHHHHHHhcCCcc
Confidence 9984 332 2344455578899999999986 222333466677778999999998762 234477788899999
Q ss_pred cEEEecCCC-------cccHHHHHhhcccchhc-cCCCCCCCc--chhccccChhhhhhcCCcccchhhHHHhhhcCCCC
Q 007586 223 SSVKINDCE-------LLDLVNFFQIATALEEF-CGGSFNHPP--EKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAML 292 (597)
Q Consensus 223 ~~L~L~~~~-------~~~~~~~~~~~~~L~~L-~l~~~~~~~--~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L 292 (597)
++|++..+. ...+...+..+++|+.+ ++....... ..+..++.+..+...++. +....+..+...+++|
T Consensus 238 ~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKL 316 (594)
T ss_dssp SEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTC
T ss_pred eEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCc
Confidence 999987653 23344455667777777 332221110 111234445554444444 5566677778899999
Q ss_pred CEEEecCCcCChHHHHHHHhcCCCCCEEEcC----------CCcChHHHHHHHHhCccCCeEEeecCCCCCCcccccccc
Q 007586 293 KKLDLLYALLNTEDHCLLIQRCPNLEILETR----------NVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLV 362 (597)
Q Consensus 293 ~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~----------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 362 (597)
++|++++| +.+.++..+...+++|++|++. +.+++.++..+...+++|++|.+. |+.+
T Consensus 317 ~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-----------~~~l 384 (594)
T 2p1m_B 317 QRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-----------CRQM 384 (594)
T ss_dssp CEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-----------ESCC
T ss_pred CEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-----------cCCc
Confidence 99999998 7788888888889999999992 257788888888889999999665 6899
Q ss_pred CHHHHHHHHHcCcccceeecc------cccCC----HHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCC
Q 007586 363 SQRGLIALAQGCLELEYIAIY------VSDIT----NESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGC 432 (597)
Q Consensus 363 ~~~~l~~l~~~~~~L~~L~l~------~~~l~----~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~ 432 (597)
++.++..+...+++|++|++. |+.++ +.++..+...+++|+.|++++ .++ +.++..+...+
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-----~l~----~~~~~~l~~~~ 455 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-----LLT----DKVFEYIGTYA 455 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-----SCC----HHHHHHHHHHC
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-----ccc----HHHHHHHHHhc
Confidence 999998888889999999997 37888 788888888899999999965 555 78888888889
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccc
Q 007586 433 DKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSL 512 (597)
Q Consensus 433 ~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 512 (597)
++|+.|++++ ..+++.++..++..+++|+.|++++|.+++.++..+..++++|+.|++++|++++.++..+...+|+|
T Consensus 456 ~~L~~L~L~~--~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 456 KKMEMLSVAF--AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp TTCCEEEEES--CCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred hhccEeeccC--CCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 9999999964 37899999999778999999999999999999988888899999999999999999999998889999
Q ss_pred cEEEeeccc
Q 007586 513 RYLWVQGYR 521 (597)
Q Consensus 513 ~~L~l~~~~ 521 (597)
+...+..+.
T Consensus 534 ~i~~~~~~~ 542 (594)
T 2p1m_B 534 NVEVIDERG 542 (594)
T ss_dssp EEEEECSSS
T ss_pred EEEEecCCC
Confidence 887777654
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=1.3e-29 Score=273.53 Aligned_cols=416 Identities=18% Similarity=0.178 Sum_probs=322.4
Q ss_pred HHHHHHhCCCCcEEEecCCc--------------cChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCC-CCe
Q 007586 104 VEEIAASFNSLKSIHFRRMI--------------VRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQ-LRT 168 (597)
Q Consensus 104 ~~~~~~~~~~L~~L~L~~~~--------------i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~-L~~ 168 (597)
...+++++++|++|+++++. +....+..+...+++ |++|++++| .+++..+..+...+++ |++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ-LKSVHFRRM-IVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT-CCEEEEESC-BCCHHHHHHHHHHHGGGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC-CCeEEeecc-EecHHHHHHHHHhccccCcE
Confidence 45677789999999997752 233456777778898 999999998 6888777777776777 999
Q ss_pred EecCCCc-ccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcc-----cHHHHHhhc
Q 007586 169 LFLEESS-IFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELL-----DLVNFFQIA 242 (597)
Q Consensus 169 L~L~~~~-~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~-----~~~~~~~~~ 242 (597)
|+|++|. +.+.+ +..+...+++|++|+++++.....+...+..+...+++|++|+++++... .+..+...+
T Consensus 143 L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 143 LKLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp EEEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred EECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 9999987 33332 56667789999999999987554455557788889999999999987653 566777889
Q ss_pred ccchhccCCCCCCCc--chhccccChhhhhhcCCccc-chhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCE
Q 007586 243 TALEEFCGGSFNHPP--EKYSAVAFPRSICRLGLSYM-EQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEI 319 (597)
Q Consensus 243 ~~L~~L~l~~~~~~~--~~~~~l~~l~~l~~~~~~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~ 319 (597)
++|+.|.+..+.... ..+..++.+..+...++... ...........+++|+.|+++++. ...+..+...+++|++
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcE
Confidence 999999997653322 23333334443332211111 001122233566778888887643 3334455668899999
Q ss_pred EEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecc-----------cccC
Q 007586 320 LETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIY-----------VSDI 387 (597)
Q Consensus 320 L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~-----------~~~l 387 (597)
|+++++ +++..+..+...+++|++|++.. .+++.++..+...+++|++|+++ ++.+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~------------~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRN------------VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEG------------GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccC------------ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 999975 57777777788999999999986 46778888888889999999998 7899
Q ss_pred CHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeecc--CCCCCH----HHHHHHHhcCCC
Q 007586 388 TNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLR--QGGLTD----TGLGYVGQYSLN 461 (597)
Q Consensus 388 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~l~~----~~~~~l~~~~~~ 461 (597)
++.++..+...|++|++|++. +..++ +.++..+...|++|++|+++.+ ++.+++ .++..+...+++
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~----~~~l~----~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVY----VSDIT----NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEE----ESCCC----HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhhCccCeEEEee----cCCcc----HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence 999999998889999999994 44666 7888888888999999999632 235665 578887778999
Q ss_pred CCEEEcccc--CCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHHHHHHHHhhCCCcEE
Q 007586 462 VRWMLLGCV--GETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNI 539 (597)
Q Consensus 462 L~~L~l~~~--~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~l 539 (597)
|+.|++++| .+++.++..+...+++|+.|++++|.+++.++..+...+++|++|++++|++++.++..+...+|.++.
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 999999754 489999999998899999999999999999999999999999999999999999999999888887765
Q ss_pred EEcCCCC
Q 007586 540 ELIPPRL 546 (597)
Q Consensus 540 ~~~~~~~ 546 (597)
-.+..+.
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 5554443
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-28 Score=256.57 Aligned_cols=391 Identities=14% Similarity=0.168 Sum_probs=255.9
Q ss_pred HHHHHHhCCCCcEEEecCCccChHHHHHHHH---hcccCccEEEecCCCCCChHHHHHHHHcCC----CCCeEecCCCcc
Q 007586 104 VEEIAASFNSLKSIHFRRMIVRDSDLEVLAK---NRGKNLLVLKLDKCCGFSTDGLLHVSRSCR----QLRTLFLEESSI 176 (597)
Q Consensus 104 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~---~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~----~L~~L~L~~~~~ 176 (597)
+..++..+++|++|++++|.+++.....+.. .+++ |++|+++++ .+++.++..+...++ +|++|+|++|.+
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA-LAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTT-CCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCC-cCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence 4444556677777777777666654444433 2355 777777765 455555555555555 577777777776
Q ss_pred cccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHh----CCCCcEEEecCCCccc-----HHHHHhhcccchh
Q 007586 177 FEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARN----CRSLSSVKINDCELLD-----LVNFFQIATALEE 247 (597)
Q Consensus 177 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~----~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~ 247 (597)
++.+...+......+++|++|+++++. +++.+...+... .++|++|++++|.+.+ +...+...++|++
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 174 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNL---LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSB---CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCc---CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCE
Confidence 665544444445556677777777665 344444433332 3457777777765442 2344444566666
Q ss_pred ccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHh----hhcCCCCCEEEecCCcCChHH---HHHHHhcCCCCCEE
Q 007586 248 FCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWII----FPFAAMLKKLDLLYALLNTED---HCLLIQRCPNLEIL 320 (597)
Q Consensus 248 L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~----~~~~~~L~~L~Ls~~~l~~~~---~~~l~~~~~~L~~L 320 (597)
|++.... +.......+ ....++|++|++++|.+++.+ +......+++|++|
T Consensus 175 L~L~~n~----------------------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 175 LTVSNND----------------------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp EECCSSB----------------------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred EECcCCC----------------------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 6654321 111122222 224568999999999988765 34445578999999
Q ss_pred EcCCC-cChHHHHHHHH----hCccCCeEEeecCCCCCCccccccccCHHHHHH---HHHcCcccceeecccccCCHHHH
Q 007586 321 ETRNV-IGDRGLEVLAR----SCKKLKRLRIERGADEQGMEDEEGLVSQRGLIA---LAQGCLELEYIAIYVSDITNESL 392 (597)
Q Consensus 321 ~l~~~-~~~~~~~~l~~----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~l~~~~~ 392 (597)
+++++ +++.++..+.. .+++|++|++++ +.+++.+... ....+++|++|+++.|.+++.+.
T Consensus 233 ~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE-----------CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-----------SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred eccCCcCChHHHHHHHHHHhcCCCCceEEECcC-----------CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 99875 45555544443 478899999997 4777765433 33458899999999999988888
Q ss_pred HHHHHhc----cCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhc----CCCCCE
Q 007586 393 ECIGANL----RNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQY----SLNVRW 464 (597)
Q Consensus 393 ~~l~~~~----~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~----~~~L~~ 464 (597)
..++..+ ++|+.|+++++. ++.. ....+...+..+++|++|++++ ..+++.++..++.. .++|+.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~----l~~~-~~~~l~~~l~~~~~L~~L~Ls~--n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS----FTAA-CCSHFSSVLAQNRFLLELQISN--NRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC----CBGG-GHHHHHHHHHHCSSCCEEECCS--SBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHhccCCccceeeEcCCCC----CchH-HHHHHHHHHhhCCCccEEEccC--CccccccHHHHHHHHcCCCCceEE
Confidence 8777643 589999988742 3310 1123445566788999999952 27888877777642 679999
Q ss_pred EEccccCCCHHHHHHHH---hCCCCCCEEEeecCCCcHHHHHHHHHccc----cccEEEeeccccC---HHHHHHHHhhC
Q 007586 465 MLLGCVGETDEGLIAFS---RGCPNLRKLEMRGCSFSEYALAAAVMQLT----SLRYLWVQGYRAS---KDGRDILRMVR 534 (597)
Q Consensus 465 L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~~----~L~~L~l~~~~i~---~~~~~~l~~~~ 534 (597)
|++++|.+++.++..+. .++++|+.|++++|.+++.++..+.+.++ +|+.|.+.++.++ .+.++.+.+..
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~ 454 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 454 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHC
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccC
Confidence 99999999986655443 35799999999999999988888886553 5888888877644 45567777778
Q ss_pred CCcEE
Q 007586 535 PFWNI 539 (597)
Q Consensus 535 ~~~~l 539 (597)
|.+++
T Consensus 455 p~l~i 459 (461)
T 1z7x_W 455 PSLRV 459 (461)
T ss_dssp TTSEE
T ss_pred CCcEe
Confidence 87654
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.4e-28 Score=253.93 Aligned_cols=380 Identities=17% Similarity=0.125 Sum_probs=286.2
Q ss_pred CCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHH---HHHHHHcCCCCCeEecCCCcccccchhHHHHHh
Q 007586 112 NSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDG---LLHVSRSCRQLRTLFLEESSIFEKDGDWLHELA 188 (597)
Q Consensus 112 ~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~ 188 (597)
+.|++|+++++.+++.....+...+++ |++|++++| .+++.+ +......+++|++|+|++|.+.+.+. ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~-L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~---~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQ-CQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGV---HCVL 77 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTT-CSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---HHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCC-ccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH---HHHH
Confidence 578999999999999888887788898 999999999 466654 34445678999999999999887653 3344
Q ss_pred hhCC----ccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccH--HHHHh----hcccchhccCCCCCCCcc
Q 007586 189 LYNT----VLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDL--VNFFQ----IATALEEFCGGSFNHPPE 258 (597)
Q Consensus 189 ~~~~----~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~--~~~~~----~~~~L~~L~l~~~~~~~~ 258 (597)
..++ +|++|++++|.....+...+...+..+++|++|++++|.+.+. ..+.. ..++|++|.+.....
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l--- 154 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL--- 154 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC---
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC---
Confidence 4444 7999999998854333345566667889999999999886532 22222 234688888865421
Q ss_pred hhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHh----cCCCCCEEEcCCC-cChHH---
Q 007586 259 KYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQ----RCPNLEILETRNV-IGDRG--- 330 (597)
Q Consensus 259 ~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~----~~~~L~~L~l~~~-~~~~~--- 330 (597)
.......++..+..+++|++|++++|.+++.+...+.. ..++|++|+++++ +++.+
T Consensus 155 ----------------~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 155 ----------------SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp ----------------BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred ----------------CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 11222345556677899999999999998887766654 3569999999975 44443
Q ss_pred HHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHH----cCcccceeecccccCCHHHHHHHHH---hccCcc
Q 007586 331 LEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ----GCLELEYIAIYVSDITNESLECIGA---NLRNLC 403 (597)
Q Consensus 331 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~ 403 (597)
+......+++|++|++++ +.+++.++..+.. .+++|++|+++.+.+++.+...+.. .+++|+
T Consensus 219 l~~~l~~~~~L~~L~Ls~-----------n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 219 LCGIVASKASLRELALGS-----------NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp HHHHHHHCTTCCEEECCS-----------SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHhCCCccEEeccC-----------CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 455556789999999998 4777777665543 4789999999999999987555443 379999
Q ss_pred cceecccCccccccCCchhHHHHHHHh----CCcCCcEEEeeccCCCCCHHHHHHHH---hcCCCCCEEEccccCCCHHH
Q 007586 404 DFRLVLLDREEKIADLPLDNGVRALLM----GCDKLRRFGLYLRQGGLTDTGLGYVG---QYSLNVRWMLLGCVGETDEG 476 (597)
Q Consensus 404 ~L~l~~~~~~~~i~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~ 476 (597)
+|++++. .++ +.+...+.. ..++|++|++++| .+++.+...+. ..+++|+.|++++|.+++.+
T Consensus 288 ~L~Ls~n----~i~----~~~~~~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 288 ELSLAGN----ELG----DEGARLLCETLLEPGCQLESLWVKSC--SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp EEECTTC----CCH----HHHHHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred eEECCCC----CCc----hHHHHHHHHHhccCCccceeeEcCCC--CCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 9999873 344 666555543 3368999999532 67776554443 36799999999999999998
Q ss_pred HHHHHhC----CCCCCEEEeecCCCcHHHHHHHH---HccccccEEEeeccccCHHHHHHHHhhCCC
Q 007586 477 LIAFSRG----CPNLRKLEMRGCSFSEYALAAAV---MQLTSLRYLWVQGYRASKDGRDILRMVRPF 536 (597)
Q Consensus 477 ~~~l~~~----~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 536 (597)
+..+... .++|+.|++++|.+++.++..+. ..+++|++|++++|++++.++..+.+..|.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc
Confidence 8777643 67999999999999997666554 458999999999999999999999876653
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=9e-26 Score=225.21 Aligned_cols=265 Identities=16% Similarity=0.189 Sum_probs=157.7
Q ss_pred ccCCCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcccc--cEEEEccccccChhhHHHhc--CCceEEEeeCCC
Q 007586 9 KMNSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTR--RHITIALCYTTTPARLRRRF--RNLESLKLKGKP 84 (597)
Q Consensus 9 ~~~~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~--~~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~ 84 (597)
....+||+ |+|.+||+|| +..|+.++++|||+|+++..... ..+.+... ... +....++ ++++.++++++.
T Consensus 7 ~~~~~LP~--eil~~If~~L-~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~-~~~-~~~~~~~~~~~l~~L~l~~n~ 81 (336)
T 2ast_B 7 VSWDSLPD--ELLLGIFSCL-CLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLH-PDVTGRLLSQGVIAFRCPRSF 81 (336)
T ss_dssp CCSSSSCH--HHHHHHHTTS-CHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-BCC-HHHHHHHHHTTCSEEECTTCE
T ss_pred CChhhCCH--HHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCchhheeeccccc-cCC-HHHHHhhhhccceEEEcCCcc
Confidence 33456999 9999999999 99999999999999999974332 23333221 122 2334444 677777777542
Q ss_pred cccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCC
Q 007586 85 RAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCR 164 (597)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 164 (597)
-.. ..+. ...+++|++|++++|.+++..+..+...+++ |++|++++| .+++.....+ ..++
T Consensus 82 l~~---~~~~-------------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-L~~L~L~~~-~l~~~~~~~l-~~~~ 142 (336)
T 2ast_B 82 MDQ---PLAE-------------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQNLSLEGL-RLSDPIVNTL-AKNS 142 (336)
T ss_dssp ECS---CCCS-------------CCCCBCCCEEECTTCEECHHHHHHHHTTBCC-CSEEECTTC-BCCHHHHHHH-TTCT
T ss_pred ccc---cchh-------------hccCCCCCEEEccCCCcCHHHHHHHHhhCCC-CCEEeCcCc-ccCHHHHHHH-hcCC
Confidence 100 0000 0145778888888777777666666666777 777777777 4555444433 3477
Q ss_pred CCCeEecCCC-cccccchhHHHHHhhhCCccceeEeecc-cccccCHHHHHHHHHhCC-CCcEEEecCCCcccHHHHHhh
Q 007586 165 QLRTLFLEES-SIFEKDGDWLHELALYNTVLETLNFYMT-DLIKVNVEDLELIARNCR-SLSSVKINDCELLDLVNFFQI 241 (597)
Q Consensus 165 ~L~~L~L~~~-~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~i~~~~l~~l~~~~~-~L~~L~L~~~~~~~~~~~~~~ 241 (597)
+|++|++++| .+++.+ +..+...+++|++|+++++ . +++.++...+..++ +|++|++++|..
T Consensus 143 ~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~---l~~~~~~~~~~~l~~~L~~L~l~~~~~--------- 207 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFD---FTEKHVQVAVAHVSETITQLNLSGYRK--------- 207 (336)
T ss_dssp TCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTT---CCHHHHHHHHHHSCTTCCEEECCSCGG---------
T ss_pred CCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCC---cChHHHHHHHHhcccCCCEEEeCCCcc---------
Confidence 7777777777 454432 3444455667777777666 4 55555555566666 677777766531
Q ss_pred cccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCc-CChHHHHHHHhcCCCCCEE
Q 007586 242 ATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYAL-LNTEDHCLLIQRCPNLEIL 320 (597)
Q Consensus 242 ~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~l~~~~~~L~~L 320 (597)
.+....++.....+++|++|++++|. +++..+..+. .+++|++|
T Consensus 208 ----------------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L 252 (336)
T 2ast_B 208 ----------------------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHL 252 (336)
T ss_dssp ----------------------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEE
T ss_pred ----------------------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEe
Confidence 11223344444556666666666666 5555544432 55666666
Q ss_pred EcCCC--cChHHHHHHHHhCccCCeEEeec
Q 007586 321 ETRNV--IGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 321 ~l~~~--~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
+++++ ..+.++..+ ..+++|++|++++
T Consensus 253 ~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~ 281 (336)
T 2ast_B 253 SLSRCYDIIPETLLEL-GEIPTLKTLQVFG 281 (336)
T ss_dssp ECTTCTTCCGGGGGGG-GGCTTCCEEECTT
T ss_pred eCCCCCCCCHHHHHHH-hcCCCCCEEeccC
Confidence 66543 233333222 3355566666655
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.6e-26 Score=253.93 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=47.7
Q ss_pred hCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcc
Q 007586 430 MGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQL 509 (597)
Q Consensus 430 ~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 509 (597)
..+++|+.|+++++ .+++.....+. .+++|+.|+++.|.+++.....+. ++++|+.|++++|.+++.....+ ..+
T Consensus 415 ~~l~~L~~L~Ls~N--~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l-~~l 489 (768)
T 3rgz_A 415 SNCSELVSLHLSFN--YLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGL-SNC 489 (768)
T ss_dssp GGCTTCCEEECCSS--EEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGG-GGC
T ss_pred hcCCCCCEEECcCC--cccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHH-hcC
Confidence 35566666666321 22222222222 556666666666666543333332 56667777777766543322222 336
Q ss_pred ccccEEEeeccccCHH
Q 007586 510 TSLRYLWVQGYRASKD 525 (597)
Q Consensus 510 ~~L~~L~l~~~~i~~~ 525 (597)
++|++|++++|++++.
T Consensus 490 ~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGE 505 (768)
T ss_dssp TTCCEEECCSSCCCSC
T ss_pred CCCCEEEccCCccCCc
Confidence 6677777777765543
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1e-25 Score=249.32 Aligned_cols=40 Identities=18% Similarity=0.038 Sum_probs=20.2
Q ss_pred CCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHH
Q 007586 485 PNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKD 525 (597)
Q Consensus 485 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 525 (597)
++|+.|++++|.+++.....+ ..+++|+.|++++|++++.
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGG-GGCTTCCEEECCSSCCCSC
T ss_pred ccccEEECcCCcccccCCHHH-hccccCCEEeCcCCccCCC
Confidence 455556666665543322222 2355666666666655543
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=3.2e-26 Score=247.51 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=53.2
Q ss_pred hCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhh
Q 007586 110 SFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELAL 189 (597)
Q Consensus 110 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 189 (597)
.+++|++|++++|.+.......+ ..+++ |++|++++|. ++...... ...+++|++|++++|.+...+. ..+.
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~-L~~L~L~~n~-i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~~- 150 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETAL-SGPKA-LKHLFFIQTG-ISSIDFIP-LHNQKTLESLYLGSNHISSIKL---PKGF- 150 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTT-SSCTT-CCEEECTTSC-CSCGGGSC-CTTCTTCCEEECCSSCCCCCCC---CTTC-
T ss_pred CccccCeeeCCCCcccccChhhh-ccccc-ccEeeccccC-cccCCcch-hccCCcccEEECCCCcccccCc---cccc-
Confidence 45666666666665443222222 22344 6666666652 22110001 1345666666666666554321 0111
Q ss_pred hCCccceeEeecccccccCHHHHHHHHHhCCCCc--EEEecCCCcc
Q 007586 190 YNTVLETLNFYMTDLIKVNVEDLELIARNCRSLS--SVKINDCELL 233 (597)
Q Consensus 190 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~--~L~L~~~~~~ 233 (597)
.+++|++|+++++....+....+ ..+++|+ .|++++|.+.
T Consensus 151 ~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 151 PTEKLKVLDFQNNAIHYLSKEDM----SSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp CCTTCCEEECCSSCCCEECHHHH----HTTTTCCSEEEECTTCCCC
T ss_pred CCcccCEEEcccCcccccChhhh----hhhcccceeEEecCCCccC
Confidence 14566666666665443333332 3455566 5666665543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=1.3e-24 Score=234.88 Aligned_cols=279 Identities=14% Similarity=0.014 Sum_probs=133.5
Q ss_pred hCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCc---chhccccChhhhhhcCCcccchhhHHHhhhcCCCCCE
Q 007586 218 NCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPP---EKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKK 294 (597)
Q Consensus 218 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~ 294 (597)
.+++|++|++++|.+..++..+...++|++|.+....... ..+..++.+..+...+..... ...+..+..+++|++
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-BCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-ccchhhhhccCcCCE
Confidence 3455555555555544444334444555555554433221 223333333332222211000 000112334555666
Q ss_pred EEecCCcCChHHH-HHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHc
Q 007586 295 LDLLYALLNTEDH-CLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 373 (597)
Q Consensus 295 L~Ls~~~l~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~ 373 (597)
|++++|.+..... ......+++|++|+++++.-..........+++|++|++++ +.++..........
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF-----------TRLKVKDAQSPFQN 423 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT-----------CCEECCTTCCTTTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC-----------CcCCCcccchhhhC
Confidence 6666655443320 11123556666666655321111111223455666666665 22221111111234
Q ss_pred CcccceeecccccCCHHHHHHHHHhccCcccceecccCccc-cccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHH
Q 007586 374 CLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREE-KIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGL 452 (597)
Q Consensus 374 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~-~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~ 452 (597)
+++|++|+++.+.++......+.. +++|++|++++..-.. .+. . ...+..+++|+.|+++++ .+++...
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~---~----~~~~~~l~~L~~L~Ls~n--~l~~~~~ 493 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQ---K----TNSLQTLGRLEILVLSFC--DLSSIDQ 493 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTT-CTTCCEEECTTCBCGGGEEC---S----SCGGGGCTTCCEEECTTS--CCCEECT
T ss_pred cccCCEEECCCCccCCcCHHHHhC-CCCCCEEECCCCCCCccccc---c----chhhccCCCccEEECCCC--ccCccCh
Confidence 666777777666665444344443 6777777776532100 000 0 011345667777777421 4443322
Q ss_pred HHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeecccc
Q 007586 453 GYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRA 522 (597)
Q Consensus 453 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i 522 (597)
..+. .+++|+.|++++|.+++.....+. ++++| .|++++|.++......+ ..+++|+.|++++|++
T Consensus 494 ~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L-~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 494 HAFT-SLKMMNHVDLSHNRLTSSSIEALS-HLKGI-YLNLASNHISIILPSLL-PILSQQRTINLRQNPL 559 (606)
T ss_dssp TTTT-TCTTCCEEECCSSCCCGGGGGGGT-TCCSC-EEECCSSCCCCCCGGGH-HHHHTSSEEECTTCCE
T ss_pred hhhc-cccCCCEEECCCCccCcCChhHhC-ccccc-EEECcCCcccccCHhhc-ccCCCCCEEeCCCCCc
Confidence 3333 567777777777777766554444 66777 77777777653322222 2367777777777764
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.9e-24 Score=233.54 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=32.6
Q ss_pred hhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeec
Q 007586 286 FPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 286 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
+..+++|++|+++++.+.... ....+++|++|++.++.- ..++.+ .+++|++|++++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~ 337 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTM 337 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC--CCSSCCEEEEES
T ss_pred cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC--CCCccceeeccC
Confidence 455667777777777654333 233566777777765432 222222 566677777766
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=4.3e-21 Score=192.16 Aligned_cols=193 Identities=16% Similarity=0.104 Sum_probs=112.7
Q ss_pred cCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHH
Q 007586 288 FAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRG 366 (597)
Q Consensus 288 ~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 366 (597)
.+++|++|++++|.+.+... ...+++|++|+++++ +.+.. . ...+++|+.|++++ +.+++..
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~-----------n~l~~~~ 215 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDIS--P-LASLTSLHYFTAYV-----------NQITDIT 215 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCG--G-GGGCTTCCEEECCS-----------SCCCCCG
T ss_pred hCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCcccccc--c-ccCCCccceeeccc-----------CCCCCCc
Confidence 44555555555555433322 235555666655543 11110 0 23455666666665 2222211
Q ss_pred HHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCC
Q 007586 367 LIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGG 446 (597)
Q Consensus 367 l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 446 (597)
. ...+++|++|+++.+.+++... + ..+++|++|+++++ .++..+ .+..+++|++|+++++ .
T Consensus 216 ~---~~~~~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n----~l~~~~-------~~~~l~~L~~L~l~~n--~ 276 (347)
T 4fmz_A 216 P---VANMTRLNSLKIGNNKITDLSP--L-ANLSQLTWLEIGTN----QISDIN-------AVKDLTKLKMLNVGSN--Q 276 (347)
T ss_dssp G---GGGCTTCCEEECCSSCCCCCGG--G-TTCTTCCEEECCSS----CCCCCG-------GGTTCTTCCEEECCSS--C
T ss_pred h---hhcCCcCCEEEccCCccCCCcc--h-hcCCCCCEEECCCC----ccCCCh-------hHhcCCCcCEEEccCC--c
Confidence 1 2345666666666665543322 2 23667777777653 222110 1346778899988532 4
Q ss_pred CCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 447 LTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 447 l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
+++. ..+ ..+++|+.|++++|.+++.....+. ++++|+.|++++|++++... ...+++|+.|++++|+++
T Consensus 277 l~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 277 ISDI--SVL-NNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCC--GGG-GGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred cCCC--hhh-cCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 4442 223 3788999999999999887777666 79999999999999765433 355899999999999865
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=3.6e-20 Score=188.13 Aligned_cols=209 Identities=18% Similarity=0.145 Sum_probs=123.7
Q ss_pred hcCCCCCEEEecCCcCChHHH---HHHHhcCCCCCEEEcCCC-cChHHHHHHH---HhC---------ccCCeEEeecCC
Q 007586 287 PFAAMLKKLDLLYALLNTEDH---CLLIQRCPNLEILETRNV-IGDRGLEVLA---RSC---------KKLKRLRIERGA 350 (597)
Q Consensus 287 ~~~~~L~~L~Ls~~~l~~~~~---~~l~~~~~~L~~L~l~~~-~~~~~~~~l~---~~~---------~~L~~L~L~~~~ 350 (597)
..+++|++|+|++|.+++.+. ...+..+++|++|+++++ +++.+...+. ..+ ++|++|++++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-- 168 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-- 168 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS--
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC--
Confidence 455667777777777665432 223345666666666653 2222222222 222 5677777765
Q ss_pred CCCCccccccccCHHHHHH---HHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHH
Q 007586 351 DEQGMEDEEGLVSQRGLIA---LAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRA 427 (597)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~ 427 (597)
+.+++.++.. ....+++|++|+++.|.+++.++..+...
T Consensus 169 ---------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----------------------------- 210 (386)
T 2ca6_A 169 ---------NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----------------------------- 210 (386)
T ss_dssp ---------SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT-----------------------------
T ss_pred ---------CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH-----------------------------
Confidence 3454443332 22345666666666666665554444330
Q ss_pred HHhCCcCCcEEEeeccCCCCCHHHHHHHH---hcCCCCCEEEccccCCCHHHHHHHHhC-----CCCCCEEEeecCCCcH
Q 007586 428 LLMGCDKLRRFGLYLRQGGLTDTGLGYVG---QYSLNVRWMLLGCVGETDEGLIAFSRG-----CPNLRKLEMRGCSFSE 499 (597)
Q Consensus 428 l~~~~~~L~~L~l~~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~i~~ 499 (597)
.+..+++|+.|+|++ +.+++.+...+. ..+++|+.|+|++|.+++.+...+... +++|+.|++++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~--n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 211 GLAYCQELKVLDLQD--NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TGGGCTTCCEEECCS--SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HhhcCCCccEEECcC--CCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 112456677777742 256655544443 367788888888888888766554432 7888999999888888
Q ss_pred HHHHHHH----HccccccEEEeeccccCHHH--HHHHHhhCCCc
Q 007586 500 YALAAAV----MQLTSLRYLWVQGYRASKDG--RDILRMVRPFW 537 (597)
Q Consensus 500 ~~~~~l~----~~~~~L~~L~l~~~~i~~~~--~~~l~~~~~~~ 537 (597)
.++..+. .++++|+.|++++|++++.+ +..+.+..|..
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 332 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhc
Confidence 6444433 44688999999998877665 46665555443
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=3.2e-21 Score=200.94 Aligned_cols=346 Identities=17% Similarity=0.147 Sum_probs=228.4
Q ss_pred HhcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCC
Q 007586 70 RRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCC 149 (597)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~ 149 (597)
..+++++.|++.++.- .. ++ . +..+++|++|++++|.+.+... ...+++ |++|++++|.
T Consensus 43 ~~l~~l~~L~l~~~~i-~~---l~------------~-~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~-L~~L~l~~n~ 101 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGI-KS---ID------------G-VEYLNNLTQINFSNNQLTDITP---LKNLTK-LVDILMNNNQ 101 (466)
T ss_dssp HHHHTCCEEECCSSCC-CC---CT------------T-GGGCTTCCEEECCSSCCCCCGG---GTTCTT-CCEEECCSSC
T ss_pred hHhccccEEecCCCCC-cc---Cc------------c-hhhhcCCCEEECCCCccCCchh---hhcccc-CCEEECCCCc
Confidence 6678899998886531 11 11 1 2367899999999997665432 245677 9999998884
Q ss_pred CCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecC
Q 007586 150 GFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKIND 229 (597)
Q Consensus 150 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~ 229 (597)
-.... . ...+++|++|++++|.+.+... ...+++|++|+++++....+. . +..+++|++|++.+
T Consensus 102 l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~-----~-~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 102 IADIT---P-LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDIS-----A-LSGLTSLQQLSFGN 165 (466)
T ss_dssp CCCCG---G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCG-----G-GTTCTTCSEEEEEE
T ss_pred cccCh---h-hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCCh-----h-hccCCcccEeecCC
Confidence 33221 2 4568899999999998776542 346789999999988754332 1 35688899999864
Q ss_pred CCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHH
Q 007586 230 CELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCL 309 (597)
Q Consensus 230 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 309 (597)
+ ...... +...++|+.|++...... .++ .+..+++|++|++++|.+.+...
T Consensus 166 ~-~~~~~~-~~~l~~L~~L~l~~n~l~------------------------~~~-~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 166 Q-VTDLKP-LANLTTLERLDISSNKVS------------------------DIS-VLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp S-CCCCGG-GTTCTTCCEEECCSSCCC------------------------CCG-GGGGCTTCSEEECCSSCCCCCGG--
T ss_pred c-ccCchh-hccCCCCCEEECcCCcCC------------------------CCh-hhccCCCCCEEEecCCccccccc--
Confidence 3 222222 455667777776543211 011 13467889999999888665433
Q ss_pred HHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCC
Q 007586 310 LIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDIT 388 (597)
Q Consensus 310 l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~ 388 (597)
...+++|+.|+++++ +.+. . ....+++|++|++++ + .++.... ...+++|++|+++.+.++
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~----------n-~l~~~~~---~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLAN----------N-QISNLAP---LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCS----------S-CCCCCGG---GTTCTTCSEEECCSSCCC
T ss_pred -ccccCCCCEEECCCCCcccc--h-hhhcCCCCCEEECCC----------C-ccccchh---hhcCCCCCEEECCCCccC
Confidence 347888999999874 2221 1 234678899999987 2 3332211 346788999999888776
Q ss_pred HHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEcc
Q 007586 389 NESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLG 468 (597)
Q Consensus 389 ~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~ 468 (597)
.... +. .+++|+.|+++++. ++..+. +..+++|+.|+++++ .+++... + ..+++|+.|+++
T Consensus 279 ~~~~--~~-~l~~L~~L~L~~n~----l~~~~~-------~~~l~~L~~L~L~~n--~l~~~~~--~-~~l~~L~~L~l~ 339 (466)
T 1o6v_A 279 NISP--LA-GLTALTNLELNENQ----LEDISP-------ISNLKNLTYLTLYFN--NISDISP--V-SSLTKLQRLFFY 339 (466)
T ss_dssp CCGG--GT-TCTTCSEEECCSSC----CSCCGG-------GGGCTTCSEEECCSS--CCSCCGG--G-GGCTTCCEEECC
T ss_pred cccc--cc-CCCccCeEEcCCCc----ccCchh-------hcCCCCCCEEECcCC--cCCCchh--h-ccCccCCEeECC
Confidence 5332 33 37888988888732 222111 357888999999532 4444322 2 378899999998
Q ss_pred ccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCH
Q 007586 469 CVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASK 524 (597)
Q Consensus 469 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 524 (597)
+|.+++.. . ..++++|+.|++++|.+++... ...+++|+.|++++|+++.
T Consensus 340 ~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDVS--S-LANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCCG--G-GTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCch--h-hccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 88887652 2 3478899999999998765443 3568899999999998653
No 16
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=2.8e-19 Score=181.61 Aligned_cols=197 Identities=16% Similarity=0.158 Sum_probs=134.0
Q ss_pred HHHhhhcCCCCCEEEecCCcCChHHHHHHH---hcC---------CCCCEEEcCCC-cChHHHH---HHHHhCccCCeEE
Q 007586 282 MWIIFPFAAMLKKLDLLYALLNTEDHCLLI---QRC---------PNLEILETRNV-IGDRGLE---VLARSCKKLKRLR 345 (597)
Q Consensus 282 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~---~~~---------~~L~~L~l~~~-~~~~~~~---~l~~~~~~L~~L~ 345 (597)
++..+..+++|++|+|++|.+++.+...+. ..+ ++|++|+++++ +++.++. .....+++|++|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 344445667777777777777655433332 233 77888888764 4444444 3445778899999
Q ss_pred eecCCCCCCccccccccCHHHHHHHHH----cCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCch
Q 007586 346 IERGADEQGMEDEEGLVSQRGLIALAQ----GCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPL 421 (597)
Q Consensus 346 L~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~ 421 (597)
+++ +.+++.++..+.. .+++|++|+++.|.+++.+...+...
T Consensus 194 L~~-----------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----------------------- 239 (386)
T 2ca6_A 194 MVQ-----------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA----------------------- 239 (386)
T ss_dssp CCS-----------SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-----------------------
T ss_pred CcC-----------CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-----------------------
Confidence 997 4777776555443 67888888888888887665555432
Q ss_pred hHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHh-----cCCCCCEEEccccCCCHHHHHHHH----hCCCCCCEEEe
Q 007586 422 DNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQ-----YSLNVRWMLLGCVGETDEGLIAFS----RGCPNLRKLEM 492 (597)
Q Consensus 422 ~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~-----~~~~L~~L~l~~~~i~~~~~~~l~----~~~~~L~~L~l 492 (597)
+..+++|++|+|++ +.+++.+...+.. .+++|+.|+|++|.+++.++..+. .++++|+.|++
T Consensus 240 -------l~~~~~L~~L~L~~--n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 240 -------LKSWPNLRELGLND--CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp -------GGGCTTCCEEECTT--CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred -------HccCCCcCEEECCC--CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 22456688888842 2677776665543 278999999999999886544333 45899999999
Q ss_pred ecCCCcHHH--HHHHHHccccccEEEeeccc
Q 007586 493 RGCSFSEYA--LAAAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 493 ~~~~i~~~~--~~~l~~~~~~L~~L~l~~~~ 521 (597)
++|.+++.+ +..+...+++++.+++....
T Consensus 311 ~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 311 NGNRFSEEDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp TTSBSCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred cCCcCCcchhHHHHHHHHhhhcCcchhhhcc
Confidence 999987666 56777767888777775543
No 17
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=2.3e-19 Score=178.66 Aligned_cols=213 Identities=16% Similarity=0.209 Sum_probs=139.2
Q ss_pred cCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHH
Q 007586 288 FAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRG 366 (597)
Q Consensus 288 ~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 366 (597)
.+++|++|++++|.+++.++......+++|++|+++++ +++.....+ ..+++|++|++++ |..+++.+
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~----------~~~l~~~~ 159 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSG----------CSGFSEFA 159 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTT----------CBSCCHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCC----------CCCCCHHH
Confidence 46778889998888887777777778888888888875 344444444 4588888888887 66777777
Q ss_pred HHHHHHcCcccceeecccc-cCCHHHHHHHHHhcc-CcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccC
Q 007586 367 LIALAQGCLELEYIAIYVS-DITNESLECIGANLR-NLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQ 444 (597)
Q Consensus 367 l~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~-~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 444 (597)
+..+...+++|++|+++.+ .+++.++..+...++ +|++|+++++. ..++ +.++...+..+++|++|++++|
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~--~~~~----~~~l~~~~~~~~~L~~L~l~~~- 232 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR--KNLQ----KSDLSTLVRRCPNLVHLDLSDS- 232 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG--GGSC----HHHHHHHHHHCTTCSEEECTTC-
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc--ccCC----HHHHHHHHhhCCCCCEEeCCCC-
Confidence 7776677888888888777 888776666556677 77777777621 0233 4556666666777777777421
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEcccc-CCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 445 GGLTDTGLGYVGQYSLNVRWMLLGCV-GETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 445 ~~l~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
..+++..+..+. .+++|+.|++++| .+++.++..+. ++++|+.|++++| +++.++..+...++ .|++++|+++
T Consensus 233 ~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-i~~~~~~~l~~~l~---~L~l~~n~l~ 306 (336)
T 2ast_B 233 VMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI-VPDGTLQLLKEALP---HLQINCSHFT 306 (336)
T ss_dssp TTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS-SCTTCHHHHHHHST---TSEESCCCSC
T ss_pred CcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc-cCHHHHHHHHhhCc---ceEEecccCc
Confidence 125666555554 5567777777555 45555554443 5667777777766 66655555543333 3335555554
Q ss_pred H
Q 007586 524 K 524 (597)
Q Consensus 524 ~ 524 (597)
.
T Consensus 307 ~ 307 (336)
T 2ast_B 307 T 307 (336)
T ss_dssp C
T ss_pred c
Confidence 3
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.5e-22 Score=218.61 Aligned_cols=64 Identities=19% Similarity=0.034 Sum_probs=29.8
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
.+++|+.|++++|.+++.....+ .++++|+.|++++|.+++.....+ ..+++|+.|++++|+++
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVF-DTLHRLQLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCEEGGGT-TTCTTCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCcCCccChhhh-cccccCCEEECCCCcCCCcCHHHc-cCCCcCCEEECCCCcCc
Confidence 44555555555555544322222 245555555555555433222211 22455555555555543
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=1.7e-21 Score=207.91 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=61.4
Q ss_pred cCcccceeecccccCCHHHHHHH--HHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHH
Q 007586 373 GCLELEYIAIYVSDITNESLECI--GANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDT 450 (597)
Q Consensus 373 ~~~~L~~L~l~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~ 450 (597)
.+++|++|+++.|.+++...... ...+++|+.|++++. .++..+ .....+..+++|++|+++++ .++.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~---~~~~~~~~l~~L~~L~Ls~N--~l~~- 401 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN----HLRSMQ---KTGEILLTLKNLTSLDISRN--TFHP- 401 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS----CCCCHH---HHHHHGGGCTTCCEEECTTC--CCCC-
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCC----cccccc---cchhhhhcCCCCCEEECCCC--CCcc-
Confidence 45666666666666655443321 122566666666552 222100 01122445566666666321 2321
Q ss_pred HHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 451 GLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 451 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
+......+++|+.|++++|.++.... .-.++|+.|++++|.+++. ...+++|++|++++|+++
T Consensus 402 -lp~~~~~~~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 402 -MPDSCQWPEKMRFLNLSSTGIRVVKT----CIPQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNKLK 464 (549)
T ss_dssp -CCSCCCCCTTCCEEECTTSCCSCCCT----TSCTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSCCS
T ss_pred -CChhhcccccccEEECCCCCcccccc----hhcCCceEEECCCCChhhh-----cccCChhcEEECCCCccC
Confidence 11111144566666666665542110 0124666666666665432 124566666666666644
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=2.2e-19 Score=179.68 Aligned_cols=305 Identities=15% Similarity=0.166 Sum_probs=196.5
Q ss_pred HhcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCC
Q 007586 70 RRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCC 149 (597)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~ 149 (597)
..++++++|+++++.- .+. + . +..+++|++|++++|.+++... ...+++ |++|++++|.
T Consensus 41 ~~l~~L~~L~l~~~~i-~~~---~------------~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~-L~~L~L~~n~ 99 (347)
T 4fmz_A 41 EELESITKLVVAGEKV-ASI---Q------------G-IEYLTNLEYLNLNGNQITDISP---LSNLVK-LTNLYIGTNK 99 (347)
T ss_dssp HHHTTCSEEECCSSCC-CCC---T------------T-GGGCTTCCEEECCSSCCCCCGG---GTTCTT-CCEEECCSSC
T ss_pred hhcccccEEEEeCCcc-ccc---h------------h-hhhcCCccEEEccCCccccchh---hhcCCc-CCEEEccCCc
Confidence 4577888888886531 110 0 0 2367888888888886665332 345566 8888888873
Q ss_pred CCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecC
Q 007586 150 GFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKIND 229 (597)
Q Consensus 150 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~ 229 (597)
++. +.. ...+++|++|++++|.+.+... ...+++|+.|+++++....... . +..+++|++|++++
T Consensus 100 -i~~--~~~-~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~-~----~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 100 -ITD--ISA-LQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLS-P----LSNMTGLNYLTVTE 164 (347)
T ss_dssp -CCC--CGG-GTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCG-G----GTTCTTCCEEECCS
T ss_pred -ccC--chH-HcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccccc-c----hhhCCCCcEEEecC
Confidence 332 122 3457888888888887765532 3456788888887764321111 1 34677788888877
Q ss_pred CCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHH
Q 007586 230 CELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCL 309 (597)
Q Consensus 230 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 309 (597)
|.+..... +..+++|++|++++|.+.+...
T Consensus 165 ~~~~~~~~------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~-- 194 (347)
T 4fmz_A 165 SKVKDVTP------------------------------------------------IANLTDLYSLSLNYNQIEDISP-- 194 (347)
T ss_dssp SCCCCCGG------------------------------------------------GGGCTTCSEEECTTSCCCCCGG--
T ss_pred CCcCCchh------------------------------------------------hccCCCCCEEEccCCccccccc--
Confidence 66432111 3356778888888887654433
Q ss_pred HHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCC
Q 007586 310 LIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDIT 388 (597)
Q Consensus 310 l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~ 388 (597)
...+++|+.|++.++ +.+... ...+++|++|++++ | .++.... ...+++|++|+++.+.++
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~----------n-~l~~~~~---~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGN----------N-KITDLSP---LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCS----------S-CCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred -ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccC----------C-ccCCCcc---hhcCCCCCEEECCCCccC
Confidence 347788888888764 222111 35677888888887 2 3332221 346788888888777776
Q ss_pred HHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEcc
Q 007586 389 NESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLG 468 (597)
Q Consensus 389 ~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~ 468 (597)
+. ..+. .+++|+.|+++++ .++..+ .+..+++|+.|++++ ..+++.....+. .+++|+.|+++
T Consensus 257 ~~--~~~~-~l~~L~~L~l~~n----~l~~~~-------~~~~l~~L~~L~L~~--n~l~~~~~~~l~-~l~~L~~L~L~ 319 (347)
T 4fmz_A 257 DI--NAVK-DLTKLKMLNVGSN----QISDIS-------VLNNLSQLNSLFLNN--NQLGNEDMEVIG-GLTNLTTLFLS 319 (347)
T ss_dssp CC--GGGT-TCTTCCEEECCSS----CCCCCG-------GGGGCTTCSEEECCS--SCCCGGGHHHHH-TCTTCSEEECC
T ss_pred CC--hhHh-cCCCcCEEEccCC----ccCCCh-------hhcCCCCCCEEECcC--CcCCCcChhHhh-ccccCCEEEcc
Confidence 52 2333 3788888888873 333211 145788999999953 267777777676 78999999999
Q ss_pred ccCCCHHHHHHHHhCCCCCCEEEeecCCCc
Q 007586 469 CVGETDEGLIAFSRGCPNLRKLEMRGCSFS 498 (597)
Q Consensus 469 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 498 (597)
+|.+++... ...+++|+.|++++|+|+
T Consensus 320 ~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 320 QNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CCccccccC---hhhhhccceeehhhhccc
Confidence 999976544 447999999999999875
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=8.1e-22 Score=208.83 Aligned_cols=432 Identities=11% Similarity=0.019 Sum_probs=255.1
Q ss_pred CCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhC
Q 007586 112 NSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYN 191 (597)
Q Consensus 112 ~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~ 191 (597)
++|++|++++|.+.......+ ..+++ |++|++++|. ++... +.....+++|++|+|++|.++..... .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~-L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDI-LSLSK-LRILIISHNR-IQYLD-ISVFKFNQELEYLDLSHNKLVKISCH-------PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHH-TTCTT-CCEEECCSSC-CCEEE-GGGGTTCTTCCEEECCSSCCCEEECC-------CC
T ss_pred ccccEEECCCCcccccChhhc-ccccc-ccEEecCCCc-cCCcC-hHHhhcccCCCEEecCCCceeecCcc-------cc
Confidence 789999999998776544444 45677 9999999983 43321 22235689999999999998754421 57
Q ss_pred CccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccc--hhccCCCCCC-----Ccchhcccc
Q 007586 192 TVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATAL--EEFCGGSFNH-----PPEKYSAVA 264 (597)
Q Consensus 192 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L--~~L~l~~~~~-----~~~~~~~l~ 264 (597)
++|++|+++++....+.. ...+..+++|++|++++|.+.. ..+...++| ++|.+..... .+..+..+.
T Consensus 90 ~~L~~L~L~~N~l~~~~~---p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPI---CKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCSEEECCSSCCSSCCC---CGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred CCccEEeccCCccccccc---hhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 899999999988643221 1223578999999999988654 233445566 7777754332 112222222
Q ss_pred C-hhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCc-------CChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHH
Q 007586 265 F-PRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYAL-------LNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLA 335 (597)
Q Consensus 265 ~-l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~-------l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~ 335 (597)
. ...+...+.. .........+..+++|+.|++++|. +.+ .+. ....+++|+.|++.++ +.+..+..+.
T Consensus 165 ~~~l~l~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 165 TESLHIVFPTNK-EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS-ILA-KLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp EEEEEEECCSSS-CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH-HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred cceEEEEeccCc-chhhhhhhhhhcccceeeccccccccccccceeec-chh-hhccccchhhccccccccCHHHHHHHH
Confidence 1 0000000000 0001111233467889999999875 221 122 3457899999999864 4444433333
Q ss_pred H--hCccCCeEEeecCCCCCCccccccccCHHHHHHH----HHcCcccceeecccccC--CHHHHHHHHHhccCccccee
Q 007586 336 R--SCKKLKRLRIERGADEQGMEDEEGLVSQRGLIAL----AQGCLELEYIAIYVSDI--TNESLECIGANLRNLCDFRL 407 (597)
Q Consensus 336 ~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l----~~~~~~L~~L~l~~~~l--~~~~~~~l~~~~~~L~~L~l 407 (597)
. .+++|++|++++ + .+++..-..+ ...+++|+.++++.+.+ ....+..+.. .++|+.|++
T Consensus 242 ~~~~~~~L~~L~l~~----------n-~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l 309 (520)
T 2z7x_B 242 QLVWHTTVWYFSISN----------V-KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTV 309 (520)
T ss_dssp HHHHTSSCSEEEEEE----------E-EEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEE
T ss_pred HHhhhCcccEEEeec----------c-cccCccccchhhcccccCceeEeccccccceecchhhhhcccc-cCceeEEEc
Confidence 2 256899999997 3 2221100000 03577888888877766 2123333322 367999999
Q ss_pred cccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHH-HHHHHHhCCCC
Q 007586 408 VLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDE-GLIAFSRGCPN 486 (597)
Q Consensus 408 ~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~ 486 (597)
++.. +...+. ...+++|++|++++ ..+++.....+. .+++|+.|++++|.+++. .+.....++++
T Consensus 310 ~~n~----l~~~~~-------~~~l~~L~~L~Ls~--n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 310 SGTR----MVHMLC-------PSKISPFLHLDFSN--NLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp ESSC----CCCCCC-------CSSCCCCCEEECCS--SCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred CCCc----cccccc-------hhhCCcccEEEeEC--CccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCC
Confidence 8743 221110 13678899999953 256654444443 788999999999999763 23334458899
Q ss_pred CCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHHHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCcccccccceeE
Q 007586 487 LRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHIL 566 (597)
Q Consensus 487 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (597)
|+.|++++|.+++.........+++|+.|++++|++++.....+. +.++.-.+..+..+ ..+.... .-..+
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N~l~-----~ip~~~~-~l~~L 446 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIK-----SIPKQVV-KLEAL 446 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEEECCSSCCC-----CCCGGGG-GCTTC
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEEECCCCccc-----ccchhhh-cCCCC
Confidence 999999999986522222223468999999999998764433221 33333333333221 1111111 11123
Q ss_pred EEeeccCCC-CCCCCc-ccccCCCCccccccCC
Q 007586 567 AYYSLAGQR-TDFPET-VRPLDTESLLSVQSCT 597 (597)
Q Consensus 567 ~~~~~~g~~-~~~p~~-~~~~~~~~~~~~~~~~ 597 (597)
.+..+.+.+ ..+|.. +..+....+|++++|.
T Consensus 447 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 344444443 346665 6667777888988873
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=6e-22 Score=216.93 Aligned_cols=132 Identities=13% Similarity=0.042 Sum_probs=61.6
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHH-HHHHHHHccccccEEEeeccccCHHHHHHHHhhCCC
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEY-ALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPF 536 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 536 (597)
.+++|+.|++++|.+++.....+. .+++|+.|++++|.++.. ........+++|+.|++++|+++......+ ...+.
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~-~~l~~ 505 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML-EGLEK 505 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTT
T ss_pred CcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh-ccccc
Confidence 455666666665554332222222 456666666666654321 011112346778888888887553222222 23344
Q ss_pred cEEEEcCCCCCCCCCC--------CCCcccccccceeEEEeeccCCCC-CCCC-cccccCCCCccccccC
Q 007586 537 WNIELIPPRLVSDTDQ--------LGNPIVIEHPAHILAYYSLAGQRT-DFPE-TVRPLDTESLLSVQSC 596 (597)
Q Consensus 537 ~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~-~~p~-~~~~~~~~~~~~~~~~ 596 (597)
++.-.+..+....... ...... ..+.+..+.+.+. .+|+ .+..+..+..|++++|
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGL-----SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCC-----CCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence 4333333332211100 001111 1123334444332 3554 4667777788888876
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=4.9e-21 Score=204.31 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=53.4
Q ss_pred hhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCc-ChHH--HHHHHHhCccCCeEEeecCCCCCCcccccccc
Q 007586 286 FPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVI-GDRG--LEVLARSCKKLKRLRIERGADEQGMEDEEGLV 362 (597)
Q Consensus 286 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~-~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 362 (597)
+..+++|++|+++.|.+.... ..+...+++|+.|+++++. .... ...+...+++|+.|++.+ +.+
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l 235 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLL-EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG-----------SVL 235 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHH-HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES-----------CEE
T ss_pred hhccccCceEecccCcccccc-hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc-----------ccc
Confidence 345677889999888865432 2334468889999888642 2110 001123467788888887 466
Q ss_pred CHHHHHHHH---HcCcccceeeccccc
Q 007586 363 SQRGLIALA---QGCLELEYIAIYVSD 386 (597)
Q Consensus 363 ~~~~l~~l~---~~~~~L~~L~l~~~~ 386 (597)
++.....+. ..+++|+.+++..+.
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred chhHHHHHHHHhhhhcccccccccccc
Confidence 665544443 345667777664443
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.1e-20 Score=199.97 Aligned_cols=389 Identities=11% Similarity=-0.032 Sum_probs=193.9
Q ss_pred CCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCC
Q 007586 73 RNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFS 152 (597)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~ 152 (597)
+++++|+++++.- .. . ....+..+++|++|++++|.+++.....+ ..+++ |++|+++++ .++
T Consensus 21 ~~L~~L~Ls~n~i-~~----------~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~-L~~L~Ls~N-~l~ 82 (520)
T 2z7x_B 21 QKTTILNISQNYI-SE----------L----WTSDILSLSKLRILIISHNRIQYLDISVF-KFNQE-LEYLDLSHN-KLV 82 (520)
T ss_dssp TTCSEEECCSSCC-CC----------C----CHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTT-CCEEECCSS-CCC
T ss_pred ccccEEECCCCcc-cc----------c----ChhhccccccccEEecCCCccCCcChHHh-hcccC-CCEEecCCC-cee
Confidence 7899999997631 10 1 12344578999999999998776433334 34577 999999998 444
Q ss_pred hHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCC--cEEEecCC
Q 007586 153 TDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSL--SSVKINDC 230 (597)
Q Consensus 153 ~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L--~~L~L~~~ 230 (597)
. ++.. .+++|++|+|++|.++.... ......+++|++|+++++... ... +..+++| +.|++++|
T Consensus 83 ~--lp~~--~l~~L~~L~L~~N~l~~~~~---p~~~~~l~~L~~L~L~~n~l~---~~~----~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 83 K--ISCH--PTVNLKHLDLSFNAFDALPI---CKEFGNMSQLKFLGLSTTHLE---KSS----VLPIAHLNISKVLLVLG 148 (520)
T ss_dssp E--EECC--CCCCCSEEECCSSCCSSCCC---CGGGGGCTTCCEEEEEESSCC---GGG----GGGGTTSCEEEEEEEEC
T ss_pred e--cCcc--ccCCccEEeccCCccccccc---hhhhccCCcceEEEecCcccc---hhh----ccccccceeeEEEeecc
Confidence 2 2222 68999999999999875321 112346779999999998743 322 2456778 99999998
Q ss_pred Cc--c-cHHHHHhhcc-cchhccCCCCCCC----cchhccccChhhhhhcCCc-----ccchhhHHHhhhcCCCCCEEEe
Q 007586 231 EL--L-DLVNFFQIAT-ALEEFCGGSFNHP----PEKYSAVAFPRSICRLGLS-----YMEQDHMWIIFPFAAMLKKLDL 297 (597)
Q Consensus 231 ~~--~-~~~~~~~~~~-~L~~L~l~~~~~~----~~~~~~l~~l~~l~~~~~~-----~~~~~~l~~~~~~~~~L~~L~L 297 (597)
.+ . ..+..+.... ....+.+...... ...+..+..+..+...+.. ......++ .+..+++|++|++
T Consensus 149 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l 227 (520)
T 2z7x_B 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTL 227 (520)
T ss_dssp TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEE
T ss_pred cccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccc
Confidence 75 1 1111111111 1111222111100 0122222222222111100 00112233 4456788999999
Q ss_pred cCCcCChHHHHHHHh--cCCCCCEEEcCCCcChHHHHHHH-----HhCccCCeEEeecCCCCCCccccccccCHHHHHHH
Q 007586 298 LYALLNTEDHCLLIQ--RCPNLEILETRNVIGDRGLEVLA-----RSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIAL 370 (597)
Q Consensus 298 s~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~l~-----~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l 370 (597)
++|.+.+..+..+.. .+++|++|+++++.-.+.++... ..+++|+.++++.+. ..+....+..+
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~---------~~~p~~~~~~~ 298 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV---------FGFPQSYIYEI 298 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC---------CCSCTHHHHHH
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc---------eecchhhhhcc
Confidence 888877766544432 35688888887642111111111 335556666666511 01222223222
Q ss_pred HHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCH-
Q 007586 371 AQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTD- 449 (597)
Q Consensus 371 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~- 449 (597)
.. .++|+.|+++.+.+..... ...+++|++|++++.. ++... ...+..+++|+.|++++ ..+++
T Consensus 299 ~~-~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~----l~~~~-----~~~~~~l~~L~~L~L~~--N~l~~l 363 (520)
T 2z7x_B 299 FS-NMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNL----LTDTV-----FENCGHLTELETLILQM--NQLKEL 363 (520)
T ss_dssp HH-TCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSC----CCTTT-----TTTCCCCSSCCEEECCS--SCCCBH
T ss_pred cc-cCceeEEEcCCCccccccc---hhhCCcccEEEeECCc----cChhh-----hhhhccCCCCCEEEccC--CccCcc
Confidence 21 2345555555544432110 0124555555555421 11000 00113455555555531 13433
Q ss_pred -HHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcc-ccccEEEeeccccC
Q 007586 450 -TGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQL-TSLRYLWVQGYRAS 523 (597)
Q Consensus 450 -~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~i~ 523 (597)
.....+. .+++|+.|++++|.+++.........+++|+.|++++|.+++.... .+ ++|+.|++++|+++
T Consensus 364 ~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 364 SKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR----CLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp HHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG----SCCTTCCEEECCSSCCC
T ss_pred ccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh----hhcccCCEEECCCCccc
Confidence 1112222 4555555555555554321111122345555555555555432211 12 45555555555544
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=5.5e-23 Score=220.56 Aligned_cols=392 Identities=14% Similarity=0.072 Sum_probs=214.5
Q ss_pred CCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCC
Q 007586 73 RNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFS 152 (597)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~ 152 (597)
++++.|+++++.- .. ++ ...+..+++|++|++++|.++......+ ..+++ |++|+++++. ++
T Consensus 28 ~~l~~L~Ls~n~l-~~---~~-----------~~~~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~-L~~L~L~~n~-l~ 89 (570)
T 2z63_A 28 FSTKNLDLSFNPL-RH---LG-----------SYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSH-LSTLILTGNP-IQ 89 (570)
T ss_dssp SSCCEEECCSCCC-CE---EC-----------TTTTTTCSSCCEEECTTCCCCEECTTTT-TTCTT-CCEEECTTCC-CC
T ss_pred ccccEEEccCCcc-Cc---cC-----------hhHhhCCCCceEEECCCCcCCccCcccc-cCchh-CCEEeCcCCc-CC
Confidence 4699999987631 11 11 0122378999999999997765333333 34577 9999999884 33
Q ss_pred hHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCc
Q 007586 153 TDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCEL 232 (597)
Q Consensus 153 ~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 232 (597)
... .....++++|++|++++|.++..+... ...+++|++|+++++....+. +...+.++++|++|++++|.+
T Consensus 90 ~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 90 SLA-LGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp EEC-TTTTTTCTTCCEEECTTSCCCCSTTCS----CTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCC
T ss_pred ccC-HhhhcCccccccccccccccccCCCcc----ccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCcc
Confidence 211 112346899999999999877654211 346789999999998754322 112245789999999999876
Q ss_pred ccHH-HHHhhcccc----hhccCCCCCCCc---chhccccChhhhhhcCC------------------------------
Q 007586 233 LDLV-NFFQIATAL----EEFCGGSFNHPP---EKYSAVAFPRSICRLGL------------------------------ 274 (597)
Q Consensus 233 ~~~~-~~~~~~~~L----~~L~l~~~~~~~---~~~~~l~~l~~l~~~~~------------------------------ 274 (597)
.... ..+...++| +.+.+....... ..+... .+..+...+.
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 5432 223333344 444443322111 111100 0000000000
Q ss_pred ---cc-----------------------cchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcCh
Q 007586 275 ---SY-----------------------MEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGD 328 (597)
Q Consensus 275 ---~~-----------------------~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 328 (597)
.. .....++..+..+++|++|++++|.+.. +......+ +|++|++.++.-.
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~ 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFG 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCS
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCccc
Confidence 00 0001123344567888888888887552 11222345 7888888764221
Q ss_pred HHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHH--HHHHHHhccCcccce
Q 007586 329 RGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNES--LECIGANLRNLCDFR 406 (597)
Q Consensus 329 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~--~~~l~~~~~~L~~L~ 406 (597)
.++. ..+++|++|++.+ +........ ..+++|++|+++.+.++... ...+.. +++|+.|+
T Consensus 318 -~l~~--~~l~~L~~L~l~~----------n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~ 379 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTS----------NKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLD 379 (570)
T ss_dssp -SCCB--CBCSSCCEEEEES----------CBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEE
T ss_pred -ccCc--ccccccCEEeCcC----------Ccccccccc----ccCCCCCEEeCcCCccCccccccccccc-cCccCEEE
Confidence 1111 2567788888876 211111110 35777888888777765332 223333 77888888
Q ss_pred ecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCC
Q 007586 407 LVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPN 486 (597)
Q Consensus 407 l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 486 (597)
++++. ++..+.. +..+++|++|+++++ .++..........+++|+.|++++|.+++.....+ .++++
T Consensus 380 l~~n~----l~~~~~~------~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~ 446 (570)
T 2z63_A 380 LSFNG----VITMSSN------FLGLEQLEHLDFQHS--NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSS 446 (570)
T ss_dssp CCSCS----EEEEEEE------EETCTTCCEEECTTS--EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT-TTCTT
T ss_pred CCCCc----ccccccc------ccccCCCCEEEccCC--ccccccchhhhhcCCCCCEEeCcCCcccccchhhh-hcCCc
Confidence 77632 1111100 235677777777321 22221111112256777777777776654332222 35677
Q ss_pred CCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHH
Q 007586 487 LRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKD 525 (597)
Q Consensus 487 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 525 (597)
|+.|++++|.+++..+......+++|+.|++++|+++..
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 777777777765322222223467777777777776543
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=3.3e-19 Score=185.69 Aligned_cols=326 Identities=18% Similarity=0.176 Sum_probs=230.1
Q ss_pred HHhcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCC
Q 007586 69 RRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKC 148 (597)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~ 148 (597)
+..+++|++|+++++. +.. + .+ +..+++|++|+++++.+.+... ...+++ |++|++++|
T Consensus 64 ~~~l~~L~~L~Ls~n~-l~~---~--------~~-----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~-L~~L~L~~n 122 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-LTD---I--------TP-----LKNLTKLVDILMNNNQIADITP---LANLTN-LTGLTLFNN 122 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCC---C--------GG-----GTTCTTCCEEECCSSCCCCCGG---GTTCTT-CCEEECCSS
T ss_pred hhhhcCCCEEECCCCc-cCC---c--------hh-----hhccccCCEEECCCCccccChh---hcCCCC-CCEEECCCC
Confidence 5788999999999763 111 0 11 3478999999999997765432 345677 999999998
Q ss_pred CCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEec
Q 007586 149 CGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKIN 228 (597)
Q Consensus 149 ~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~ 228 (597)
. ++.. .. ...+++|++|++++|.+.+... ...+++|+.|+++... ..+. . +.++++|++|+++
T Consensus 123 ~-l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~~~-~~~~-----~-~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 123 Q-ITDI--DP-LKNLTNLNRLELSSNTISDISA------LSGLTSLQQLSFGNQV-TDLK-----P-LANLTTLERLDIS 185 (466)
T ss_dssp C-CCCC--GG-GTTCTTCSEEEEEEEEECCCGG------GTTCTTCSEEEEEESC-CCCG-----G-GTTCTTCCEEECC
T ss_pred C-CCCC--hH-HcCCCCCCEEECCCCccCCChh------hccCCcccEeecCCcc-cCch-----h-hccCCCCCEEECc
Confidence 4 3332 12 4578999999999998776531 3467899999997432 2121 1 4578999999999
Q ss_pred CCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHH
Q 007586 229 DCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHC 308 (597)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~ 308 (597)
+|.+..+.. +...++|++|.+...... . ++. ...+++|++|++++|.+.+.+
T Consensus 186 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------------------~-----~~~-~~~l~~L~~L~l~~n~l~~~~-- 237 (466)
T 1o6v_A 186 SNKVSDISV-LAKLTNLESLIATNNQIS-------------------D-----ITP-LGILTNLDELSLNGNQLKDIG-- 237 (466)
T ss_dssp SSCCCCCGG-GGGCTTCSEEECCSSCCC-------------------C-----CGG-GGGCTTCCEEECCSSCCCCCG--
T ss_pred CCcCCCChh-hccCCCCCEEEecCCccc-------------------c-----ccc-ccccCCCCEEECCCCCcccch--
Confidence 998766543 566778888887644211 0 111 345789999999999977642
Q ss_pred HHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCC
Q 007586 309 LLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDIT 388 (597)
Q Consensus 309 ~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~ 388 (597)
....+++|+.|+++++.-..... ...+++|++|++++ +.++.... ...+++|+.|+++.+.++
T Consensus 238 -~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-----------n~l~~~~~---~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 238 -TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA-----------NQISNISP---LAGLTALTNLELNENQLE 300 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS-----------SCCCCCGG---GTTCTTCSEEECCSSCCS
T ss_pred -hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCC-----------CccCcccc---ccCCCccCeEEcCCCccc
Confidence 24489999999999753221111 46789999999998 33433221 346899999999888886
Q ss_pred HHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEcc
Q 007586 389 NESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLG 468 (597)
Q Consensus 389 ~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~ 468 (597)
+... +. .+++|+.|+++++ .++..+. +..+++|+.|+++++ .+++. ..+. .+++|+.|+++
T Consensus 301 ~~~~--~~-~l~~L~~L~L~~n----~l~~~~~-------~~~l~~L~~L~l~~n--~l~~~--~~l~-~l~~L~~L~l~ 361 (466)
T 1o6v_A 301 DISP--IS-NLKNLTYLTLYFN----NISDISP-------VSSLTKLQRLFFYNN--KVSDV--SSLA-NLTNINWLSAG 361 (466)
T ss_dssp CCGG--GG-GCTTCSEEECCSS----CCSCCGG-------GGGCTTCCEEECCSS--CCCCC--GGGT-TCTTCCEEECC
T ss_pred Cchh--hc-CCCCCCEEECcCC----cCCCchh-------hccCccCCEeECCCC--ccCCc--hhhc-cCCCCCEEeCC
Confidence 5332 43 4899999999874 2332111 357899999999542 45543 2333 78999999999
Q ss_pred ccCCCHHHHHHHHhCCCCCCEEEeecCCCcH
Q 007586 469 CVGETDEGLIAFSRGCPNLRKLEMRGCSFSE 499 (597)
Q Consensus 469 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 499 (597)
+|.+++... ..++++|+.|++++|+++.
T Consensus 362 ~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 362 HNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred CCccCccch---hhcCCCCCEEeccCCcccC
Confidence 999977654 4589999999999999654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=2.7e-21 Score=201.26 Aligned_cols=219 Identities=13% Similarity=0.066 Sum_probs=137.1
Q ss_pred CCCCEEEecCCcCChHHHHH-------HHhcCCCCCEEEcCCC-cChHHHHHHHHh--CccCCeEEeecCCCCCCccc--
Q 007586 290 AMLKKLDLLYALLNTEDHCL-------LIQRCPNLEILETRNV-IGDRGLEVLARS--CKKLKRLRIERGADEQGMED-- 357 (597)
Q Consensus 290 ~~L~~L~Ls~~~l~~~~~~~-------l~~~~~~L~~L~l~~~-~~~~~~~~l~~~--~~~L~~L~L~~~~~~~~~~~-- 357 (597)
++|+.|++++|.+.+..... ....+++|++|+++++ +.......+... .++|+.|+++++........
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 56889999988865432111 0124578999999975 444444444332 37789999887321110000
Q ss_pred cccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcE
Q 007586 358 EEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRR 437 (597)
Q Consensus 358 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~ 437 (597)
.........+.. ...++|++|+++.+.++......+.. +++|+.|++++.. ++..+. ..+..+++|++
T Consensus 260 ~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~----l~~~~~-----~~~~~l~~L~~ 327 (455)
T 3v47_A 260 NFKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNE----INKIDD-----NAFWGLTHLLK 327 (455)
T ss_dssp SSCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSC----CCEECT-----TTTTTCTTCCE
T ss_pred hhccCccccccc--ccccCceEEEecCccccccchhhccc-CCCCCEEECCCCc----ccccCh-----hHhcCcccCCE
Confidence 000000011111 12478999999988887654444544 8999999998742 221110 11346889999
Q ss_pred EEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEe
Q 007586 438 FGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWV 517 (597)
Q Consensus 438 L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l 517 (597)
|++++ +.++......+. .+++|+.|++++|.+++.....+. ++++|+.|++++|.+++.... ....+++|+.|++
T Consensus 328 L~Ls~--N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l 402 (455)
T 3v47_A 328 LNLSQ--NFLGSIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDG-IFDRLTSLQKIWL 402 (455)
T ss_dssp EECCS--SCCCEECGGGGT-TCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEEC
T ss_pred EECCC--CccCCcChhHhc-CcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHh-HhccCCcccEEEc
Confidence 99953 255544333333 789999999999999776544444 789999999999998653322 2245899999999
Q ss_pred eccccCHH
Q 007586 518 QGYRASKD 525 (597)
Q Consensus 518 ~~~~i~~~ 525 (597)
++|+++..
T Consensus 403 ~~N~l~~~ 410 (455)
T 3v47_A 403 HTNPWDCS 410 (455)
T ss_dssp CSSCBCCC
T ss_pred cCCCcccC
Confidence 99986553
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=6.9e-21 Score=208.54 Aligned_cols=209 Identities=15% Similarity=0.032 Sum_probs=103.0
Q ss_pred CCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChH-HHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHH
Q 007586 290 AMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDR-GLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI 368 (597)
Q Consensus 290 ~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 368 (597)
++|+.|++++|.+....... ...+++|+.|+++++.-.. ........+++|++|++++ + .++.....
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~----------n-~l~~~~~~ 448 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDA-FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY----------N-KYLQLTRN 448 (680)
T ss_dssp SCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS----------C-SEEECCTT
T ss_pred CcCceEECCCCCCCeEChhh-hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC----------C-CcceeChh
Confidence 34555555555544332222 3367888888888653211 1112234577788888887 2 22211111
Q ss_pred HHHHcCcccceeecccccCCHH--HHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCC
Q 007586 369 ALAQGCLELEYIAIYVSDITNE--SLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGG 446 (597)
Q Consensus 369 ~l~~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 446 (597)
. ...+++|+.|++..+.++.. ....+. .+++|+.|++++. .++..+. ..+..+++|+.|++++ +.
T Consensus 449 ~-~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N----~l~~i~~-----~~~~~l~~L~~L~Ls~--N~ 515 (680)
T 1ziw_A 449 S-FALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNN----NIANIND-----DMLEGLEKLEILDLQH--NN 515 (680)
T ss_dssp T-TTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSS----CCCCCCT-----TTTTTCTTCCEEECCS--SC
T ss_pred h-hhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCC----CCCcCCh-----hhhccccccCEEeCCC--CC
Confidence 1 12466777777766554311 111222 2666777776652 2221111 0123566677777732 13
Q ss_pred CCHHHHHH-------HHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeec
Q 007586 447 LTDTGLGY-------VGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQG 519 (597)
Q Consensus 447 l~~~~~~~-------l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 519 (597)
++...... ....+++|+.|++++|.++...... ..++++|+.|++++|.++..... ....+++|+.|++++
T Consensus 516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV-FKDLFELKIIDLGLNNLNTLPAS-VFNNQVSLKSLNLQK 593 (680)
T ss_dssp CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECTT
T ss_pred ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH-cccccCcceeECCCCCCCcCCHh-HhCCCCCCCEEECCC
Confidence 33210000 0125567777777766665322111 23566777777777765432211 112356777777777
Q ss_pred cccCHH
Q 007586 520 YRASKD 525 (597)
Q Consensus 520 ~~i~~~ 525 (597)
|+++..
T Consensus 594 N~l~~~ 599 (680)
T 1ziw_A 594 NLITSV 599 (680)
T ss_dssp SCCCBC
T ss_pred CcCCcc
Confidence 764443
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=5.7e-22 Score=212.63 Aligned_cols=209 Identities=17% Similarity=0.092 Sum_probs=140.5
Q ss_pred hcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCc-ChHH-HHHHHHhCccCCeEEeecCCCCCCccccccccCH
Q 007586 287 PFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVI-GDRG-LEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQ 364 (597)
Q Consensus 287 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~-~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 364 (597)
..+++|++|++++|.+...... ..+++|+.|+++++. .... .......+++|++|++++ + .++.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~----------n-~l~~ 387 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF----------N-GVIT 387 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS----------C-SEEE
T ss_pred ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC----------C-cccc
Confidence 4678999999999985433221 478999999999753 2211 122345789999999998 3 2322
Q ss_pred HHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccC
Q 007586 365 RGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQ 444 (597)
Q Consensus 365 ~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 444 (597)
.... ...+++|++|+++.+.++..........+++|+.|+++++....... ..+..+++|+.|+++++
T Consensus 388 ~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~l~~n- 455 (570)
T 2z63_A 388 MSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---------GIFNGLSSLEVLKMAGN- 455 (570)
T ss_dssp EEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT---------TTTTTCTTCCEEECTTC-
T ss_pred cccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch---------hhhhcCCcCcEEECcCC-
Confidence 1111 23688999999988877643332223348999999998743211111 12457889999999432
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCH
Q 007586 445 GGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASK 524 (597)
Q Consensus 445 ~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 524 (597)
.+++..+......+++|+.|++++|.+++.....+. ++++|+.|++++|.+++.....+ ..+++|+.|++++|+++.
T Consensus 456 -~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 456 -SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMASNQLKSVPDGIF-DRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp -EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBCC
T ss_pred -cCccccchhhhhcccCCCEEECCCCccccCChhhhh-cccCCCEEeCCCCcCCCCCHHHh-hcccCCcEEEecCCcccC
Confidence 344322222223789999999999999876544444 78999999999999765433222 458999999999998654
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=3.6e-21 Score=215.06 Aligned_cols=393 Identities=12% Similarity=0.045 Sum_probs=190.4
Q ss_pred cCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHH-HHHHHHhcccCccEEEecCCCC
Q 007586 72 FRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSD-LEVLAKNRGKNLLVLKLDKCCG 150 (597)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~-l~~l~~~~~~~L~~L~L~~~~~ 150 (597)
.++++.|+++++.- . ...+.. +..+++|++|+|++|...... ...+ ..+++ |+.|+|++|.
T Consensus 23 p~~l~~LdLs~N~i-~--~i~~~~------------~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~-L~~L~Ls~N~- 84 (844)
T 3j0a_A 23 LNTTERLLLSFNYI-R--TVTASS------------FPFLEQLQLLELGSQYTPLTIDKEAF-RNLPN-LRILDLGSSK- 84 (844)
T ss_dssp CTTCCEEEEESCCC-C--EECSSS------------CSSCCSCSEEEECTTCCCCEECTTTT-SSCTT-CCEEECTTCC-
T ss_pred CCCcCEEECCCCcC-C--ccChhH------------CcccccCeEEeCCCCCCccccCHHHh-cCCCC-CCEEECCCCc-
Confidence 35688888886531 1 111111 126788888888888322111 1122 34566 8888888773
Q ss_pred CChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCC
Q 007586 151 FSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDC 230 (597)
Q Consensus 151 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~ 230 (597)
++.. .+....++++|++|+|++|.+.+.... ......+++|++|++++|....+.. ...+.++++|++|++++|
T Consensus 85 l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 85 IYFL-HPDAFQGLFHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCEE-CTTSSCSCSSCCCEECTTCCCSSCCST--TCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEEEESS
T ss_pred Cccc-CHhHccCCcccCEeeCcCCCCCccccc--CccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEECCCC
Confidence 3221 112234578888888888877643210 0112356788888888877543321 122356788888888887
Q ss_pred CcccH-HHHHhh--cccchhccCCCCCCCc---chhccccC------hhhhhhcCCc--ccchhhHHH------------
Q 007586 231 ELLDL-VNFFQI--ATALEEFCGGSFNHPP---EKYSAVAF------PRSICRLGLS--YMEQDHMWI------------ 284 (597)
Q Consensus 231 ~~~~~-~~~~~~--~~~L~~L~l~~~~~~~---~~~~~l~~------l~~l~~~~~~--~~~~~~l~~------------ 284 (597)
.+... +..+.. .++|+.|.+....... ..+..+.. +..+...+.. ......+..
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 64321 111111 1567777765443221 11111111 2221111110 000000000
Q ss_pred --------------------hhh--cCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCC
Q 007586 285 --------------------IFP--FAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLK 342 (597)
Q Consensus 285 --------------------~~~--~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~ 342 (597)
.+. ..++|++|++++|.+....... ...+++|+.|++.++.-..........+++|+
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 000 1245666666666544332111 22556666666664321111111123455666
Q ss_pred eEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchh
Q 007586 343 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLD 422 (597)
Q Consensus 343 ~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~ 422 (597)
+|++++ +.++..... ....+++|+.|+++.|.++......+.. +++|+.|++++. .++.
T Consensus 318 ~L~Ls~-----------N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~Ls~N----~l~~---- 376 (844)
T 3j0a_A 318 VLNLSY-----------NLLGELYSS-NFYGLPKVAYIDLQKNHIAIIQDQTFKF-LEKLQTLDLRDN----ALTT---- 376 (844)
T ss_dssp EEEEES-----------CCCSCCCSC-SCSSCTTCCEEECCSCCCCCCCSSCSCS-CCCCCEEEEETC----CSCC----
T ss_pred EEECCC-----------CCCCccCHH-HhcCCCCCCEEECCCCCCCccChhhhcC-CCCCCEEECCCC----CCCc----
Confidence 666665 122111000 1124556666666655553322222222 566666666552 1221
Q ss_pred HHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHH
Q 007586 423 NGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYAL 502 (597)
Q Consensus 423 ~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 502 (597)
+..+++|+.|+++. +.++. +......++.|+++.|.+++........++++|+.|++++|.+++...
T Consensus 377 ------i~~~~~L~~L~l~~--N~l~~-----l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 377 ------IHFIPSIPDIFLSG--NKLVT-----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp ------CSSCCSCSEEEEES--CCCCC-----CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred ------ccCCCCcchhccCC--CCccc-----ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 01255566666632 12221 112345677777777776654444444577788888888887653211
Q ss_pred HHHHHccccccEEEeeccccC
Q 007586 503 AAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 503 ~~l~~~~~~L~~L~l~~~~i~ 523 (597)
......+++|+.|++++|.++
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCS
T ss_pred ccccccCCccccccCCCCccc
Confidence 111223577888888887754
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=2.8e-19 Score=190.90 Aligned_cols=437 Identities=11% Similarity=0.008 Sum_probs=215.5
Q ss_pred CCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhC
Q 007586 112 NSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYN 191 (597)
Q Consensus 112 ~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~ 191 (597)
++|++|++++|.++......+ ..+++ |++|++++| .++... +.....+++|++|+|++|.++..... .+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~-~~l~~-L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDI-SFLSE-LRVLRLSHN-RIRSLD-FHVFLFNQDLEYLDVSHNRLQNISCC-------PM 120 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGT-TTCTT-CCEEECCSC-CCCEEC-TTTTTTCTTCCEEECTTSCCCEECSC-------CC
T ss_pred CCcCEEECCCCCccccChhhh-ccCCC-ccEEECCCC-CCCcCC-HHHhCCCCCCCEEECCCCcCCccCcc-------cc
Confidence 688899998887665433333 34566 889998887 333211 12224578888999988887754421 56
Q ss_pred CccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccc--hhccCCCCCC-----Ccchhcccc
Q 007586 192 TVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATAL--EEFCGGSFNH-----PPEKYSAVA 264 (597)
Q Consensus 192 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L--~~L~l~~~~~-----~~~~~~~l~ 264 (597)
++|++|+++++....+.. ...+.++++|++|+++++.+... .+...++| ++|.+..... .+..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~---p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPV---CKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TTCSEEECCSSCCSBCCC---CGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred ccCCEEECCCCCccccCc---hHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccC
Confidence 788899888887653331 11235678889999888765431 12233344 6666644322 112222221
Q ss_pred C-hhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHH---HHHHHhcCCCCCEEEcCC-CcChHHHHHHHH--h
Q 007586 265 F-PRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTED---HCLLIQRCPNLEILETRN-VIGDRGLEVLAR--S 337 (597)
Q Consensus 265 ~-l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~l~~~~~~L~~L~l~~-~~~~~~~~~l~~--~ 337 (597)
. ...+...+ ..............+++|+.|++++|...... .......+++|+.|.+.+ ...+..+..+.. .
T Consensus 196 ~~~l~l~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 196 TTVLHLVFHP-NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp EEEEEEEECS-SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred cceEEEEecC-ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 0 00000000 00000011112235677888888887532222 122344788888888876 344443333322 2
Q ss_pred CccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccC--CHHHHHHHHHhccCcccceecccCcccc
Q 007586 338 CKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDI--TNESLECIGANLRNLCDFRLVLLDREEK 415 (597)
Q Consensus 338 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l--~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 415 (597)
.++|++|+++++.... .+....+......++.|+.+++..+.+ ....+..+.. .++|+.|++++..
T Consensus 275 ~~~L~~L~l~~n~l~~-------~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~---- 342 (562)
T 3a79_B 275 PRPVEYLNIYNLTITE-------RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTP---- 342 (562)
T ss_dssp TSSEEEEEEEEEEECS-------CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESSC----
T ss_pred cccccEEEEeccEeec-------cccchhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCCC----
Confidence 3579999998721100 111000000001223333333333332 2333333333 3567777766532
Q ss_pred ccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHH-HHHHHhCCCCCCEEEeec
Q 007586 416 IADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEG-LIAFSRGCPNLRKLEMRG 494 (597)
Q Consensus 416 i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~L~~L~l~~ 494 (597)
+.... ....+++|++|++++ +.+++.....+. .+++|+.|+++.|.+++.. +.....++++|+.|++++
T Consensus 343 ~~~~~-------~~~~l~~L~~L~l~~--n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 343 FIHMV-------CPPSPSSFTFLNFTQ--NVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp CCCCC-------CCSSCCCCCEEECCS--SCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred ccccc-------CccCCCCceEEECCC--Cccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 11000 013556677777742 244443333232 5677777777777766421 122233667777777777
Q ss_pred CCCcHHHHHHHHHccccccEEEeeccccCHHHHHHHHhhCCCcEEEEcCCCCCCCCCCCCCcccccccceeEEEeeccCC
Q 007586 495 CSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGNPIVIEHPAHILAYYSLAGQ 574 (597)
Q Consensus 495 ~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 574 (597)
|.+++.........+++|+.|++++|++++.....+. +.++.-.+..+..+. -+.+.. .-..+.+..+.+.
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~~-ip~~~~-----~l~~L~~L~L~~N 483 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMS-IPKDVT-----HLQALQELNVASN 483 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---TTCSEEECCSSCCCC-CCTTTT-----SSCCCSEEECCSS
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---CcCCEEECCCCcCcc-cChhhc-----CCCCCCEEECCCC
Confidence 7765421111122356777777777776643322211 222222222222110 000011 1112333344443
Q ss_pred C-CCCCCc-ccccCCCCccccccC
Q 007586 575 R-TDFPET-VRPLDTESLLSVQSC 596 (597)
Q Consensus 575 ~-~~~p~~-~~~~~~~~~~~~~~~ 596 (597)
+ ..+|+. +..+....+|++++|
T Consensus 484 ~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 484 QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCCCCCHHHHhcCCCCCEEEecCC
Confidence 3 245665 666777788888887
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=5.8e-21 Score=213.40 Aligned_cols=372 Identities=14% Similarity=0.046 Sum_probs=193.2
Q ss_pred HHHhcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecC
Q 007586 68 LRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDK 147 (597)
Q Consensus 68 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~ 147 (597)
.+..+++|+.|+++++...... .+ ..+..+++|++|+|++|.+.......+ ..+++ |++|++++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i--~~------------~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~-L~~L~Ls~ 106 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTI--DK------------EAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFH-LFELRLYF 106 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEE--CT------------TTTSSCTTCCEEECTTCCCCEECTTSS-CSCSS-CCCEECTT
T ss_pred HCcccccCeEEeCCCCCCcccc--CH------------HHhcCCCCCCEEECCCCcCcccCHhHc-cCCcc-cCEeeCcC
Confidence 3566788999999876321110 01 112367888888888886654433333 34566 88888888
Q ss_pred CCCCChHHHH-HHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEE
Q 007586 148 CCGFSTDGLL-HVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVK 226 (597)
Q Consensus 148 ~~~~~~~~l~-~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~ 226 (597)
|. ++..... .....+++|++|+|++|.+..... ......+++|++|+++.+....+....+..+.. ++|+.|+
T Consensus 107 n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~ 180 (844)
T 3j0a_A 107 CG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFS 180 (844)
T ss_dssp CC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCE
T ss_pred CC-CCcccccCccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEE
Confidence 73 3211111 112357888888888887765431 112345678888888887765455555544432 5677777
Q ss_pred ecCCCcccHH-HHHhhc------ccchhccCCCCCCCc---ch------------------------------------h
Q 007586 227 INDCELLDLV-NFFQIA------TALEEFCGGSFNHPP---EK------------------------------------Y 260 (597)
Q Consensus 227 L~~~~~~~~~-~~~~~~------~~L~~L~l~~~~~~~---~~------------------------------------~ 260 (597)
+++|.+.... ..+..+ .+|+.|.+....... .. +
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 7765533211 000111 125555554331110 00 0
Q ss_pred ccc--cChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhC
Q 007586 261 SAV--AFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSC 338 (597)
Q Consensus 261 ~~l--~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 338 (597)
..+ ..+..+...+.. +. ...+..+..+++|++|+|++|.+....... ..++++|++|+++++.-..........+
T Consensus 261 ~~l~~~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGF-VF-SLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTSCCCEEECTTCC-CC-EECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hccccCCccEEECCCCc-cc-ccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 000 111111111100 00 112334567889999999999977554333 3478899999998753221111223457
Q ss_pred ccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccC
Q 007586 339 KKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIAD 418 (597)
Q Consensus 339 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~ 418 (597)
++|+.|+++++ .++...-. ....+++|+.|+++.|.++.. .. +++|+.|.+++.. ++.
T Consensus 338 ~~L~~L~L~~N-----------~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~i-----~~-~~~L~~L~l~~N~----l~~ 395 (844)
T 3j0a_A 338 PKVAYIDLQKN-----------HIAIIQDQ-TFKFLEKLQTLDLRDNALTTI-----HF-IPSIPDIFLSGNK----LVT 395 (844)
T ss_dssp TTCCEEECCSC-----------CCCCCCSS-CSCSCCCCCEEEEETCCSCCC-----SS-CCSCSEEEEESCC----CCC
T ss_pred CCCCEEECCCC-----------CCCccChh-hhcCCCCCCEEECCCCCCCcc-----cC-CCCcchhccCCCC----ccc
Confidence 88999999872 33222111 113578899999988887631 11 6788888887632 221
Q ss_pred CchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCC
Q 007586 419 LPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSF 497 (597)
Q Consensus 419 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i 497 (597)
.+ ....+++.|+++. +.+++.........+++|+.|++++|.+++.........+++|+.|++++|.+
T Consensus 396 l~---------~~~~~l~~L~ls~--N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 396 LP---------KINLTANLIHLSE--NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp CC---------CCCTTCCEEECCS--CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred cc---------ccccccceeeccc--CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcc
Confidence 11 1123455566531 13332221222224556666666555554321111122345555555555554
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=2.1e-19 Score=182.79 Aligned_cols=322 Identities=13% Similarity=0.062 Sum_probs=198.8
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
+++++.|+++++.++.-.. .+...+++ |++|+++++. ++.... .....+++|++|+|++|.+....... ...
T Consensus 44 l~~l~~l~l~~~~l~~l~~-~~~~~l~~-L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPA-ALLDSFRQ-VELLNLNDLQ-IEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHV----FQN 115 (390)
T ss_dssp GCCCSEEEEESCEESEECT-HHHHHCCC-CSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSCCCCCCTTT----TTT
T ss_pred cCCceEEEecCCchhhCCh-hHhccccc-CcEEECCCCc-ccccCh-hhccCCCCcCEEECCCCCCCcCCHHH----hcC
Confidence 4677788887775443222 22244566 8888887763 332111 11235778888888888776554221 234
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhh
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSIC 270 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 270 (597)
+++|++|+++++....+.... +.++++|++|++++|.+..+.
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~---------------------------------- 157 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIE---------------------------------- 157 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCC----------------------------------
T ss_pred CCCCCEEECCCCccCcCCHHH----hcCCCCCcEEECCCCccCccC----------------------------------
Confidence 567888888777654333321 245777888888877532110
Q ss_pred hcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCC
Q 007586 271 RLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGA 350 (597)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 350 (597)
+..+..+++|++|++++|.++... ...+++|+.|+++++.-.. ....++|++|++++
T Consensus 158 ------------~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~-- 214 (390)
T 3o6n_A 158 ------------DDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASH-- 214 (390)
T ss_dssp ------------TTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCS--
T ss_pred ------------hhhccCCCCCCEEECCCCcCCccc----cccccccceeecccccccc-----cCCCCcceEEECCC--
Confidence 112235677888888887766543 2357778888887642211 01235688888876
Q ss_pred CCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHh
Q 007586 351 DEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLM 430 (597)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~ 430 (597)
+.++.... ...++|+.|+++.+.+++. ..+.. +++|++|++++.. ++..+ ...+.
T Consensus 215 ---------n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~~-l~~L~~L~Ls~n~----l~~~~-----~~~~~ 269 (390)
T 3o6n_A 215 ---------NSINVVRG----PVNVELTILKLQHNNLTDT--AWLLN-YPGLVEVDLSYNE----LEKIM-----YHPFV 269 (390)
T ss_dssp ---------SCCCEEEC----CCCSSCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSC----CCEEE-----SGGGT
T ss_pred ---------Ceeeeccc----cccccccEEECCCCCCccc--HHHcC-CCCccEEECCCCc----CCCcC-----hhHcc
Confidence 23322110 1246788888888877653 23433 7888888888732 22110 01134
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccc
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLT 510 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 510 (597)
.+++|++|++++ ..++.. ......+++|+.|++++|.++..... + ..+++|+.|++++|.+++.. ...++
T Consensus 270 ~l~~L~~L~L~~--n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~-~-~~l~~L~~L~L~~N~i~~~~----~~~~~ 339 (390)
T 3o6n_A 270 KMQRLERLYISN--NRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERN-Q-PQFDRLENLYLDHNSIVTLK----LSTHH 339 (390)
T ss_dssp TCSSCCEEECCS--SCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGG-H-HHHTTCSEEECCSSCCCCCC----CCTTC
T ss_pred ccccCCEEECCC--CcCccc--CcccCCCCCCCEEECCCCcceecCcc-c-cccCcCCEEECCCCccceeC----chhhc
Confidence 678899999953 244431 11113678999999999998643211 2 36789999999999986543 34589
Q ss_pred cccEEEeeccccCHHHHHHHHhhCCC
Q 007586 511 SLRYLWVQGYRASKDGRDILRMVRPF 536 (597)
Q Consensus 511 ~L~~L~l~~~~i~~~~~~~l~~~~~~ 536 (597)
+|+.|++++|+++......+.+..+.
T Consensus 340 ~L~~L~l~~N~~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLRALFRNVAR 365 (390)
T ss_dssp CCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred cCCEEEcCCCCccchhHHHHHHHHHh
Confidence 99999999999998888777666554
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=2.3e-21 Score=209.41 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=45.1
Q ss_pred HHcCCCCCeEecCCCccccc--chhH-----------HHHHhh--hCCccceeEeecccccccCHHHHHHHHHhCCCCcE
Q 007586 160 SRSCRQLRTLFLEESSIFEK--DGDW-----------LHELAL--YNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSS 224 (597)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~--~~~~-----------l~~l~~--~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~ 224 (597)
..++++|++|+|++|.+++. ...| +..... .+++|++|++++|.....-+ ..+.++++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~ 277 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP----TFLKALPEMQL 277 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC----TTTTTCSSCCE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh----HHHhcCCCCCE
Confidence 34566777777777766541 0000 011111 45567777777665322212 11235667777
Q ss_pred EEecCCC-ccc--HHHHHhhc------ccchhccCCC
Q 007586 225 VKINDCE-LLD--LVNFFQIA------TALEEFCGGS 252 (597)
Q Consensus 225 L~L~~~~-~~~--~~~~~~~~------~~L~~L~l~~ 252 (597)
|++++|. +.+ ++..+... ++|++|.+..
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 7777765 443 44434332 5666666644
No 35
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=5.2e-17 Score=163.07 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=63.1
Q ss_pred HhCC-cCCcEEEeeccCCCCCHHHHHHHHh----cCCCCCEEEccccCCCHHHHHH---HHhCCCCCCEEEeecCC---C
Q 007586 429 LMGC-DKLRRFGLYLRQGGLTDTGLGYVGQ----YSLNVRWMLLGCVGETDEGLIA---FSRGCPNLRKLEMRGCS---F 497 (597)
Q Consensus 429 ~~~~-~~L~~L~l~~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~~~~---l~~~~~~L~~L~l~~~~---i 497 (597)
+..+ ++|++|++++ +.+++.+...+.. ..++|+.|++++|.+++.+... +...+++|+.|++++|. +
T Consensus 191 l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 191 LASIPASVTSLDLSA--NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp HHTSCTTCCEEECTT--SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred HHhCCCCCCEEECCC--CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 3344 3677777742 2555544443332 3468888888888887755433 33456888888888887 6
Q ss_pred cHHHHHHHHHc---cccccEEEeeccccCHHH
Q 007586 498 SEYALAAAVMQ---LTSLRYLWVQGYRASKDG 526 (597)
Q Consensus 498 ~~~~~~~l~~~---~~~L~~L~l~~~~i~~~~ 526 (597)
++.++..+... +++|+.|++++|++.+.+
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 77777776643 466778888888876653
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=2.9e-20 Score=204.49 Aligned_cols=35 Identities=9% Similarity=-0.071 Sum_probs=14.8
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeec
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRG 494 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 494 (597)
.+++|+.|+|++|.++.. ... ..++++|+.|++++
T Consensus 751 ~l~~L~~L~Ls~N~L~~l-p~~-l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSF-PTQ-PLNSSQLKAFGIRH 785 (876)
T ss_dssp TCTTCCEEECCSSCCSSC-CCG-GGGCTTCCEEECCC
T ss_pred cCCCcCEEEeCCCCCCcc-chh-hhcCCCCCEEECCC
Confidence 344555555554444431 111 11444555555543
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=7.7e-21 Score=205.33 Aligned_cols=354 Identities=12% Similarity=0.024 Sum_probs=215.0
Q ss_pred HHHHhCCCCcEEEecCCccChH-----------------HHHHHH-HhcccCccEEEecCCCCCChHHHHHHHHcCCCCC
Q 007586 106 EIAASFNSLKSIHFRRMIVRDS-----------------DLEVLA-KNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLR 167 (597)
Q Consensus 106 ~~~~~~~~L~~L~L~~~~i~~~-----------------~l~~l~-~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 167 (597)
..+..+++|++|+|++|.++.. ....+. ..+++ |++|++++|..... ++....++++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~-L~~L~L~~n~l~~~--~p~~l~~l~~L~ 276 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD-LTDVEVYNCPNLTK--LPTFLKALPEMQ 276 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-CCEEEEECCTTCSS--CCTTTTTCSSCC
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC-CCEEEecCCcCCcc--ChHHHhcCCCCC
Confidence 3455789999999999988773 222222 14567 99999999843221 223335689999
Q ss_pred eEecCCCc-ccc-cchhHHHHH--hhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcc-cHHHHHhhc
Q 007586 168 TLFLEESS-IFE-KDGDWLHEL--ALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELL-DLVNFFQIA 242 (597)
Q Consensus 168 ~L~L~~~~-~~~-~~~~~l~~l--~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~~ 242 (597)
+|++++|. +++ .-...+..+ ...+++|++|+++++....+... ..+..+++|++|++++|.+. .++ .+...
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~---~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE---TSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH---HHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch---hhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 99999998 765 222223222 12347999999998876533321 13457899999999998876 555 45556
Q ss_pred ccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCC-CCEEEecCCcCChHHHHHHHhc--CCCCCE
Q 007586 243 TALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAM-LKKLDLLYALLNTEDHCLLIQR--CPNLEI 319 (597)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~l~~~--~~~L~~ 319 (597)
++|+.|.+.... + ..+|..+..+++ |++|++++|.++.. ...... +++|+.
T Consensus 353 ~~L~~L~L~~N~----------------------l--~~lp~~l~~l~~~L~~L~Ls~N~l~~l--p~~~~~~~l~~L~~ 406 (636)
T 4eco_A 353 IKLASLNLAYNQ----------------------I--TEIPANFCGFTEQVENLSFAHNKLKYI--PNIFDAKSVSVMSA 406 (636)
T ss_dssp EEESEEECCSSE----------------------E--EECCTTSEEECTTCCEEECCSSCCSSC--CSCCCTTCSSCEEE
T ss_pred CCCCEEECCCCc----------------------c--ccccHhhhhhcccCcEEEccCCcCccc--chhhhhcccCccCE
Confidence 778887775431 1 123334556777 89999988886622 111212 347888
Q ss_pred EEcCCCcChHHHHHHHH-------hCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHH
Q 007586 320 LETRNVIGDRGLEVLAR-------SCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESL 392 (597)
Q Consensus 320 L~l~~~~~~~~~~~l~~-------~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~ 392 (597)
|+++++.-....+.... .+++|++|++++ +.++... ..+...+++|++|+++.|.++. ..
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~-----------N~l~~lp-~~~~~~l~~L~~L~Ls~N~l~~-i~ 473 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN-----------NQISKFP-KELFSTGSPLSSINLMGNMLTE-IP 473 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS-----------SCCCSCC-THHHHTTCCCSEEECCSSCCSB-CC
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcC-----------CccCcCC-HHHHccCCCCCEEECCCCCCCC-cC
Confidence 88886532221111111 345788888887 3443211 1233457888888888887762 11
Q ss_pred HHHHH-------hccCcccceecccCccccccCCchhHHHHHHH-hCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCE
Q 007586 393 ECIGA-------NLRNLCDFRLVLLDREEKIADLPLDNGVRALL-MGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRW 464 (597)
Q Consensus 393 ~~l~~-------~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~ 464 (597)
..+.. .+++|+.|++++. .++..+.. +. ..+++|+.|++++ +.++. ....+. .+++|+.
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N----~l~~lp~~-----~~~~~l~~L~~L~Ls~--N~l~~-ip~~~~-~l~~L~~ 540 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFN----KLTKLSDD-----FRATTLPYLVGIDLSY--NSFSK-FPTQPL-NSSTLKG 540 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSS----CCCBCCGG-----GSTTTCTTCCEEECCS--SCCSS-CCCGGG-GCSSCCE
T ss_pred HHHhccccccccccCCccEEECcCC----cCCccChh-----hhhccCCCcCEEECCC--CCCCC-cChhhh-cCCCCCE
Confidence 11111 1227888888763 22222211 11 2678899999953 24554 222333 6889999
Q ss_pred EEcc------ccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 465 MLLG------CVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 465 L~l~------~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
|+++ +|.+.......+. ++++|+.|++++|.++..... -.++|+.|++++|+++
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~ip~~----~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDIRKVNEK----ITPNISVLDIKDNPNI 600 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCCCBCCSC----CCTTCCEEECCSCTTC
T ss_pred EECCCCcccccCcccccChHHHh-cCCCCCEEECCCCcCCccCHh----HhCcCCEEECcCCCCc
Confidence 9984 4555444333333 688999999999987322111 1378999999999744
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=3.5e-20 Score=203.77 Aligned_cols=352 Identities=11% Similarity=-0.007 Sum_probs=220.0
Q ss_pred HHHhCCCCcEEEecCCccChH-----------------HHHHHH-HhcccCccEEEecCCCCCChHHHHHHHHcCCCCCe
Q 007586 107 IAASFNSLKSIHFRRMIVRDS-----------------DLEVLA-KNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRT 168 (597)
Q Consensus 107 ~~~~~~~L~~L~L~~~~i~~~-----------------~l~~l~-~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 168 (597)
.+..+++|++|+|++|.++.+ .+..+. ..+++ |+.|++++|..... ++....++++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~-L~~L~Ls~N~l~~~--iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD-LTDVELYNCPNMTQ--LPDFLYDLPELQS 519 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-CCEEEEESCTTCCS--CCGGGGGCSSCCE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC-CCEEECcCCCCCcc--ChHHHhCCCCCCE
Confidence 355789999999999988772 222221 25677 99999999843321 2233456899999
Q ss_pred EecCCCc-ccc-cchhHHHHHh---hhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcc
Q 007586 169 LFLEESS-IFE-KDGDWLHELA---LYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIAT 243 (597)
Q Consensus 169 L~L~~~~-~~~-~~~~~l~~l~---~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 243 (597)
|+|++|. ++. .-...+..+. ..+++|+.|+++++....+... ..+.++++|+.|++++|.+..++ .+...+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~---~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS---ASLQKMVKLGLLDCVHNKVRHLE-AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH---HHHTTCTTCCEEECTTSCCCBCC-CCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh---hhhhcCCCCCEEECCCCCcccch-hhcCCC
Confidence 9999997 765 2222233332 3567999999999886534320 13457899999999998876655 555677
Q ss_pred cchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCC-CCEEEecCCcCChHHHHHHHhcC--CCCCEE
Q 007586 244 ALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAM-LKKLDLLYALLNTEDHCLLIQRC--PNLEIL 320 (597)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~l~~~~--~~L~~L 320 (597)
+|+.|.+...... .+|..+..+++ |++|+|++|.+... ....... ++|+.|
T Consensus 596 ~L~~L~Ls~N~l~------------------------~lp~~l~~l~~~L~~L~Ls~N~L~~l--p~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 596 KLTDLKLDYNQIE------------------------EIPEDFCAFTDQVEGLGFSHNKLKYI--PNIFNAKSVYVMGSV 649 (876)
T ss_dssp EESEEECCSSCCS------------------------CCCTTSCEECTTCCEEECCSSCCCSC--CSCCCTTCSSCEEEE
T ss_pred cceEEECcCCccc------------------------cchHHHhhccccCCEEECcCCCCCcC--chhhhccccCCCCEE
Confidence 8888877643211 23333456677 89999998886622 1222222 348888
Q ss_pred EcCCCcChHHHHHHH---H--hCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHH
Q 007586 321 ETRNVIGDRGLEVLA---R--SCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECI 395 (597)
Q Consensus 321 ~l~~~~~~~~~~~l~---~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l 395 (597)
+++++.-...++.+. . .+++|+.|++++ +.++... ..+...+++|+.|+++.|.++. ....+
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~-----------N~L~~lp-~~~~~~l~~L~~L~Ls~N~L~~-ip~~~ 716 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSY-----------NEIQKFP-TELFATGSPISTIILSNNLMTS-IPENS 716 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS-----------SCCCSCC-HHHHHTTCCCSEEECCSCCCSC-CCTTS
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccC-----------CcCCccC-HHHHccCCCCCEEECCCCcCCc-cChHH
Confidence 888653221111111 1 234788888887 3444221 2233468889999998888762 11111
Q ss_pred HH-------hccCcccceecccCccccccCCchhHHHHHHH--hCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEE
Q 007586 396 GA-------NLRNLCDFRLVLLDREEKIADLPLDNGVRALL--MGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWML 466 (597)
Q Consensus 396 ~~-------~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~--~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~ 466 (597)
.. +|++|+.|+++++ .++..+. .+ ..+++|+.|+|++ +.++. ....+. .+++|+.|+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N----~L~~lp~------~l~~~~l~~L~~L~Ls~--N~L~~-lp~~l~-~L~~L~~L~ 782 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFN----KLTSLSD------DFRATTLPYLSNMDVSY--NCFSS-FPTQPL-NSSQLKAFG 782 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSS----CCCCCCG------GGSTTTCTTCCEEECCS--SCCSS-CCCGGG-GCTTCCEEE
T ss_pred hccccccccccCCccEEECCCC----CCccchH------HhhhccCCCcCEEEeCC--CCCCc-cchhhh-cCCCCCEEE
Confidence 11 2348888888874 2332221 12 2678899999953 24554 122233 788999999
Q ss_pred ccc------cCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 467 LGC------VGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 467 l~~------~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
|+. |.+.......+. ++++|+.|++++|.++..... -.++|+.|++++|++.
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~-~L~~L~~L~Ls~N~L~~Ip~~----l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIRKVDEK----LTPQLYILDIADNPNI 840 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCCCBCCSC----CCSSSCEEECCSCTTC
T ss_pred CCCCCCcccccccccChHHHh-cCCCCCEEECCCCCCCccCHh----hcCCCCEEECCCCCCC
Confidence 965 555444333333 789999999999997321110 2478999999999854
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=1.9e-19 Score=187.22 Aligned_cols=87 Identities=10% Similarity=0.080 Sum_probs=57.9
Q ss_pred ccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCccccc-chhHHHHHhhhCCccceeEeecccccccCHHHHHHH
Q 007586 137 GKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEK-DGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELI 215 (597)
Q Consensus 137 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l 215 (597)
++ |++|+++++ .++... +.....+++|++|++++|.+... .. .....+++|++|+++++....+.+..+
T Consensus 30 ~~-l~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~--- 99 (455)
T 3v47_A 30 AH-VNYVDLSLN-SIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRN----NTFRGLSSLIILKLDYNQFLQLETGAF--- 99 (455)
T ss_dssp TT-CCEEECCSS-CCCEEC-TTTTSSCTTCCEEECCCCSTTCEECT----TTTTTCTTCCEEECTTCTTCEECTTTT---
T ss_pred Cc-cCEEEecCC-ccCcCC-hhHhccCccccEEECcCCcccceECc----ccccccccCCEEeCCCCccCccChhhc---
Confidence 45 999999987 333221 12234688999999999976422 11 113456789999999887654433333
Q ss_pred HHhCCCCcEEEecCCCccc
Q 007586 216 ARNCRSLSSVKINDCELLD 234 (597)
Q Consensus 216 ~~~~~~L~~L~L~~~~~~~ 234 (597)
.++++|++|++++|.+.+
T Consensus 100 -~~l~~L~~L~L~~n~l~~ 117 (455)
T 3v47_A 100 -NGLANLEVLTLTQCNLDG 117 (455)
T ss_dssp -TTCTTCCEEECTTSCCBT
T ss_pred -cCcccCCEEeCCCCCCCc
Confidence 467889999999887653
No 40
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=5.6e-16 Score=155.56 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=24.7
Q ss_pred cCCCCCEEEccccC---CCHHHHHHHHhC---CCCCCEEEeecCCCcHH
Q 007586 458 YSLNVRWMLLGCVG---ETDEGLIAFSRG---CPNLRKLEMRGCSFSEY 500 (597)
Q Consensus 458 ~~~~L~~L~l~~~~---i~~~~~~~l~~~---~~~L~~L~l~~~~i~~~ 500 (597)
.+++|+.|++++|. +++.++..+... +++|+.|++++|.+.+.
T Consensus 251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 45566666665554 555555555433 35566667777776544
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=5e-19 Score=185.18 Aligned_cols=226 Identities=15% Similarity=0.058 Sum_probs=121.2
Q ss_pred CCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhC
Q 007586 112 NSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYN 191 (597)
Q Consensus 112 ~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~ 191 (597)
++++.|+|+++.++......+ ..+++ |++|+++++ .++... +....++++|++|+|++|.+...... ....+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~-L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l 103 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF-ASFPH-LEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLG----VFTGL 103 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTT-CCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTT----SSTTC
T ss_pred CCCcEEECCCCccceECHhHc-cCCCC-CCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCCcCCccCcc----cccCC
Confidence 467777877776554322222 33455 777777776 232211 11123567788888877776654321 12345
Q ss_pred CccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhh
Q 007586 192 TVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICR 271 (597)
Q Consensus 192 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~ 271 (597)
++|++|+++++....+.+.. +..+++|++|++++|.+..+.
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~----------------------------------- 144 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYIS----------------------------------- 144 (477)
T ss_dssp TTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEEC-----------------------------------
T ss_pred CCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeC-----------------------------------
Confidence 67777777776654333222 245677777777776532100
Q ss_pred cCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCC
Q 007586 272 LGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGAD 351 (597)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 351 (597)
+..+..+++|++|++++|.++...... +.++++|+.|++.++.-..........+++|++|++++
T Consensus 145 -----------~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~--- 209 (477)
T 2id5_A 145 -----------HRAFSGLNSLEQLTLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH--- 209 (477)
T ss_dssp -----------TTSSTTCTTCCEEEEESCCCSSCCHHH-HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC---
T ss_pred -----------hhhccCCCCCCEEECCCCcCcccChhH-hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC---
Confidence 112235677888888888766544333 33677788877775421111111223467788888876
Q ss_pred CCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecc
Q 007586 352 EQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVL 409 (597)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 409 (597)
+..+...... . ....+|++|+++.+.++......+.. +++|+.|++++
T Consensus 210 -------~~~~~~~~~~-~-~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~ 257 (477)
T 2id5_A 210 -------WPYLDTMTPN-C-LYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSY 257 (477)
T ss_dssp -------CTTCCEECTT-T-TTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCS
T ss_pred -------CccccccCcc-c-ccCccccEEECcCCcccccCHHHhcC-ccccCeeECCC
Confidence 3222211000 0 11236777777666665433333333 56666666654
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.9e-18 Score=185.53 Aligned_cols=321 Identities=13% Similarity=0.069 Sum_probs=199.7
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
+++++.|+++++.++.-... +...+++ |+.|+++++. ++... ......+++|++|+|++|.+....... ...
T Consensus 50 l~~l~~l~l~~~~l~~lp~~-~~~~l~~-L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA-LLDSFRQ-VELLNLNDLQ-IEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHV----FQN 121 (597)
T ss_dssp GCCCSEEEESSCEESEECTH-HHHHCCC-CSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTT----TTT
T ss_pred CCCceEEEeeCCCCCCcCHH-HHccCCC-CcEEECCCCC-CCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHH----HcC
Confidence 46788888888755432222 2245566 8888888773 33211 112235778888888888776654222 235
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhh
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSIC 270 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 270 (597)
+++|+.|+++++....+.... +.++++|++|++++|.+..+
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~----------------------------------- 162 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERI----------------------------------- 162 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBC-----------------------------------
T ss_pred CCCCCEEEeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCC-----------------------------------
Confidence 668888888877655443322 24677888888888763311
Q ss_pred hcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCC
Q 007586 271 RLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGA 350 (597)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 350 (597)
.+..+..+++|++|++++|.++... ...+++|+.|+++++.-.. ....++|+.|++++
T Consensus 163 -----------~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~-- 220 (597)
T 3oja_B 163 -----------EDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASH-- 220 (597)
T ss_dssp -----------CTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCS--
T ss_pred -----------ChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCcccc-----ccCCchhheeeccC--
Confidence 1112345677888888888766543 2357788888887642211 02245688888886
Q ss_pred CCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHh
Q 007586 351 DEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLM 430 (597)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~ 430 (597)
+.++.... ...++|+.|+++.+.+++. ..+.. +++|+.|++++.. ++..+. ..+.
T Consensus 221 ---------n~l~~~~~----~~~~~L~~L~L~~n~l~~~--~~l~~-l~~L~~L~Ls~N~----l~~~~~-----~~~~ 275 (597)
T 3oja_B 221 ---------NSINVVRG----PVNVELTILKLQHNNLTDT--AWLLN-YPGLVEVDLSYNE----LEKIMY-----HPFV 275 (597)
T ss_dssp ---------SCCCEEEC----SCCSCCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSC----CCEEES-----GGGT
T ss_pred ---------Cccccccc----ccCCCCCEEECCCCCCCCC--hhhcc-CCCCCEEECCCCc----cCCCCH-----HHhc
Confidence 22322110 1235788888888887653 33443 7888888888732 221100 1134
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccc
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLT 510 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 510 (597)
.+++|+.|+|++ +.++.- ......+++|+.|+|++|.++... ..+ ..+++|+.|++++|.++... ...++
T Consensus 276 ~l~~L~~L~Ls~--N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~-~~~-~~l~~L~~L~L~~N~l~~~~----~~~~~ 345 (597)
T 3oja_B 276 KMQRLERLYISN--NRLVAL--NLYGQPIPTLKVLDLSHNHLLHVE-RNQ-PQFDRLENLYLDHNSIVTLK----LSTHH 345 (597)
T ss_dssp TCSSCCEEECTT--SCCCEE--ECSSSCCTTCCEEECCSSCCCCCG-GGH-HHHTTCSEEECCSSCCCCCC----CCTTC
T ss_pred CccCCCEEECCC--CCCCCC--CcccccCCCCcEEECCCCCCCccC-ccc-ccCCCCCEEECCCCCCCCcC----hhhcC
Confidence 688899999953 244431 111225889999999999987432 122 36789999999999976543 34589
Q ss_pred cccEEEeeccccCHHHHHHHHhhCC
Q 007586 511 SLRYLWVQGYRASKDGRDILRMVRP 535 (597)
Q Consensus 511 ~L~~L~l~~~~i~~~~~~~l~~~~~ 535 (597)
+|+.|++++|+++......+....+
T Consensus 346 ~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp CCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred CCCEEEeeCCCCCChhHHHHHHHHh
Confidence 9999999999988887766655444
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=3e-18 Score=174.29 Aligned_cols=323 Identities=13% Similarity=0.105 Sum_probs=203.7
Q ss_pred hcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCC
Q 007586 71 RFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCG 150 (597)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~ 150 (597)
.+++++.++++++. +.. + -..++..+++|++|+++++.+.+.....+ ..+++ |++|+++++.
T Consensus 43 ~l~~l~~l~l~~~~-l~~---l-----------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~-L~~L~L~~n~- 104 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRK---L-----------PAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHT-IQKLYMGFNA- 104 (390)
T ss_dssp GGCCCSEEEEESCE-ESE---E-----------CTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTT-CCEEECCSSC-
T ss_pred ccCCceEEEecCCc-hhh---C-----------ChhHhcccccCcEEECCCCcccccChhhc-cCCCC-cCEEECCCCC-
Confidence 46789999998652 111 1 12345578999999999997765433333 34567 9999999883
Q ss_pred CChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCC
Q 007586 151 FSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDC 230 (597)
Q Consensus 151 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~ 230 (597)
++... +.....+++|++|++++|.+...... +...+++|++|+++++....+....+ ..+++|++|++++|
T Consensus 105 l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 105 IRYLP-PHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTF----QATTSLQNLQLSSN 175 (390)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTT----SSCTTCCEEECCSS
T ss_pred CCcCC-HHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChhhc----cCCCCCCEEECCCC
Confidence 33211 12234689999999999998755422 23457899999999987654544333 56789999999998
Q ss_pred CcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHH
Q 007586 231 ELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLL 310 (597)
Q Consensus 231 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l 310 (597)
.+.... ...+++|++|++++|.+...
T Consensus 176 ~l~~~~-------------------------------------------------~~~l~~L~~L~l~~n~l~~~----- 201 (390)
T 3o6n_A 176 RLTHVD-------------------------------------------------LSLIPSLFHANVSYNLLSTL----- 201 (390)
T ss_dssp CCSBCC-------------------------------------------------GGGCTTCSEEECCSSCCSEE-----
T ss_pred cCCccc-------------------------------------------------cccccccceeeccccccccc-----
Confidence 743211 12345566666666665432
Q ss_pred HhcCCCCCEEEcCCCc-ChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCH
Q 007586 311 IQRCPNLEILETRNVI-GDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITN 389 (597)
Q Consensus 311 ~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~ 389 (597)
...++|++|+++++. .... ....++|+.|++++ +.+++. .....+++|++|+++.+.++.
T Consensus 202 -~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~-----------n~l~~~---~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 202 -AIPIAVEELDASHNSINVVR----GPVNVELTILKLQH-----------NNLTDT---AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp -ECCSSCSEEECCSSCCCEEE----CCCCSSCCEEECCS-----------SCCCCC---GGGGGCTTCSEEECCSSCCCE
T ss_pred -CCCCcceEEECCCCeeeecc----ccccccccEEECCC-----------CCCccc---HHHcCCCCccEEECCCCcCCC
Confidence 133456666666531 1110 01235677777776 233332 122456777778777777765
Q ss_pred HHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccc
Q 007586 390 ESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGC 469 (597)
Q Consensus 390 ~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 469 (597)
.....+.. +++|+.|++++. .++..+. ....+++|+.|+++++ .++.. ...+. .+++|+.|++++
T Consensus 263 ~~~~~~~~-l~~L~~L~L~~n----~l~~~~~------~~~~l~~L~~L~L~~n--~l~~~-~~~~~-~l~~L~~L~L~~ 327 (390)
T 3o6n_A 263 IMYHPFVK-MQRLERLYISNN----RLVALNL------YGQPIPTLKVLDLSHN--HLLHV-ERNQP-QFDRLENLYLDH 327 (390)
T ss_dssp EESGGGTT-CSSCCEEECCSS----CCCEEEC------SSSCCTTCCEEECCSS--CCCCC-GGGHH-HHTTCSEEECCS
T ss_pred cChhHccc-cccCCEEECCCC----cCcccCc------ccCCCCCCCEEECCCC--cceec-Ccccc-ccCcCCEEECCC
Confidence 43444444 778888887763 2221111 1236788999999532 44321 11222 578999999999
Q ss_pred cCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccc
Q 007586 470 VGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSL 512 (597)
Q Consensus 470 ~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 512 (597)
|.+++.. ...+++|+.|++++|+++......+...++..
T Consensus 328 N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 328 NSIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 366 (390)
T ss_dssp SCCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred CccceeC----chhhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence 9987654 34789999999999999888777666544443
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.5e-19 Score=189.07 Aligned_cols=310 Identities=15% Similarity=0.019 Sum_probs=201.7
Q ss_pred CccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHh
Q 007586 139 NLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARN 218 (597)
Q Consensus 139 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 218 (597)
+++.|+++++. ++... ......+++|++|+|++|.+....... ...+++|++|+++++....+.... +.+
T Consensus 33 ~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~----~~~ 102 (477)
T 2id5_A 33 ETRLLDLGKNR-IKTLN-QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTLGLRSNRLKLIPLGV----FTG 102 (477)
T ss_dssp TCSEEECCSSC-CCEEC-TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCSCCTTS----STT
T ss_pred CCcEEECCCCc-cceEC-HhHccCCCCCCEEECCCCccCEeChhh----hhCCccCCEEECCCCcCCccCccc----ccC
Confidence 39999998873 33211 112245788999999998877553222 235678888988887765444322 246
Q ss_pred CCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEec
Q 007586 219 CRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLL 298 (597)
Q Consensus 219 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls 298 (597)
+++|++|++++|.+... .+..+..+++|++|+++
T Consensus 103 l~~L~~L~Ls~n~i~~~----------------------------------------------~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 103 LSNLTKLDISENKIVIL----------------------------------------------LDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp CTTCCEEECTTSCCCEE----------------------------------------------CTTTTTTCTTCCEEEEC
T ss_pred CCCCCEEECCCCccccC----------------------------------------------ChhHccccccCCEEECC
Confidence 78888888888763211 11233567899999999
Q ss_pred CCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccc
Q 007586 299 YALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELE 378 (597)
Q Consensus 299 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 378 (597)
+|.+.......+ .++++|++|++.++.-..........+++|+.|++++ +.+...... ....+++|+
T Consensus 137 ~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~i~~~~~~-~~~~l~~L~ 203 (477)
T 2id5_A 137 DNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-----------LNINAIRDY-SFKRLYRLK 203 (477)
T ss_dssp CTTCCEECTTSS-TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES-----------CCCCEECTT-CSCSCTTCC
T ss_pred CCccceeChhhc-cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC-----------CcCcEeChh-hcccCcccc
Confidence 998765543333 3789999999997533222233446789999999997 233222111 123578999
Q ss_pred eeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhc
Q 007586 379 YIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQY 458 (597)
Q Consensus 379 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~ 458 (597)
+|+++.+............ ..+|+.|++++. .++..+. ..+..+++|+.|++++ +.++......+. .
T Consensus 204 ~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n----~l~~~~~-----~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~-~ 270 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLY-GLNLTSLSITHC----NLTAVPY-----LAVRHLVYLRFLNLSY--NPISTIEGSMLH-E 270 (477)
T ss_dssp EEEEECCTTCCEECTTTTT-TCCCSEEEEESS----CCCSCCH-----HHHTTCTTCCEEECCS--SCCCEECTTSCT-T
T ss_pred eeeCCCCccccccCccccc-CccccEEECcCC----cccccCH-----HHhcCccccCeeECCC--CcCCccChhhcc-c
Confidence 9999765543222222222 358999999874 3332221 2356889999999953 245543322233 7
Q ss_pred CCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC-HHHHHHHHh
Q 007586 459 SLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS-KDGRDILRM 532 (597)
Q Consensus 459 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~-~~~~~~l~~ 532 (597)
+++|+.|++++|.+++.....+. ++++|+.|++++|.++......+ ..+++|+.|++++|+++ +....++..
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFR-GLNYLRVLNVSGNQLTTLEESVF-HSVGNLETLILDSNPLACDCRLLWVFR 343 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBT-TCTTCCEEECCSSCCSCCCGGGB-SCGGGCCEEECCSSCEECSGGGHHHHT
T ss_pred cccCCEEECCCCccceECHHHhc-CcccCCEEECCCCcCceeCHhHc-CCCcccCEEEccCCCccCccchHhHHh
Confidence 88999999999998776544443 78999999999999764332222 35799999999999844 444555544
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=3.6e-18 Score=176.51 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=70.7
Q ss_pred HHhcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCC
Q 007586 69 RRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKC 148 (597)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~ 148 (597)
+..+++|+.|+++++. +.. +| .+..+++|++|++++|.+++.. + ..+++ |++|++++|
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~---~~-------------~l~~l~~L~~L~Ls~n~l~~~~---~-~~l~~-L~~L~Ls~N 95 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITD---MT-------------GIEKLTGLTKLICTSNNITTLD---L-SQNTN-LTYLACDSN 95 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCC---CT-------------TGGGCTTCSEEECCSSCCSCCC---C-TTCTT-CSEEECCSS
T ss_pred hhHcCCCCEEEccCCC-ccc---Ch-------------hhcccCCCCEEEccCCcCCeEc---c-ccCCC-CCEEECcCC
Confidence 5567777777777542 110 01 1235677777777777655531 1 33455 777777776
Q ss_pred CCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEec
Q 007586 149 CGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKIN 228 (597)
Q Consensus 149 ~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~ 228 (597)
. ++... ...+++|++|++++|.++... ...+++|++|+++++....++ +..+++|++|+++
T Consensus 96 ~-l~~~~----~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 96 K-LTNLD----VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCH 156 (457)
T ss_dssp C-CSCCC----CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECT
T ss_pred C-Cceee----cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCccceec-------cccCCcCCEEECC
Confidence 3 33211 235677777777777765432 234567777777776654331 2456677777777
Q ss_pred CCC
Q 007586 229 DCE 231 (597)
Q Consensus 229 ~~~ 231 (597)
+|.
T Consensus 157 ~n~ 159 (457)
T 3bz5_A 157 LNK 159 (457)
T ss_dssp TCS
T ss_pred CCC
Confidence 763
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=2.3e-17 Score=170.45 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=52.5
Q ss_pred hCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhh
Q 007586 110 SFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELAL 189 (597)
Q Consensus 110 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 189 (597)
.+++|++|++++|.++... + ..+++ |++|+++++ .++... ...+++|++|++++|.+++.. ..
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~---~-~~l~~-L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l~-------l~ 145 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLD---V-TPLTK-LTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEID-------VS 145 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC---C-TTCTT-CCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCCC-------CT
T ss_pred cCCCCCEEECcCCCCceee---c-CCCCc-CCEEECCCC-cCCeec----CCCCCcCCEEECCCCccceec-------cc
Confidence 4566666666666554421 1 23455 666666665 222211 234566666666666655432 22
Q ss_pred hCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCccc
Q 007586 190 YNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLD 234 (597)
Q Consensus 190 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~ 234 (597)
.+++|++|+++.+.. ++.-. +..+++|++|++++|.+..
T Consensus 146 ~l~~L~~L~l~~n~~--~~~~~----~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 146 HNTQLTELDCHLNKK--ITKLD----VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp TCTTCCEEECTTCSC--CCCCC----CTTCTTCCEEECCSSCCCC
T ss_pred cCCcCCEEECCCCCc--ccccc----cccCCcCCEEECCCCccce
Confidence 455666666665522 11101 2345666666666665433
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.3e-17 Score=177.12 Aligned_cols=320 Identities=13% Similarity=0.100 Sum_probs=202.2
Q ss_pred cCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCC
Q 007586 72 FRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGF 151 (597)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~ 151 (597)
.++++.++++++. +.-+ ...++..+++|++|+|+++.+.+.....+ ..+++ |++|++++|. +
T Consensus 50 l~~l~~l~l~~~~----l~~l-----------p~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~-L~~L~L~~n~-l 111 (597)
T 3oja_B 50 LNNQKIVTFKNST----MRKL-----------PAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHT-IQKLYMGFNA-I 111 (597)
T ss_dssp GCCCSEEEESSCE----ESEE-----------CTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTT-CCEEECCSSC-C
T ss_pred CCCceEEEeeCCC----CCCc-----------CHHHHccCCCCcEEECCCCCCCCCChHHh-cCCCC-CCEEECCCCc-C
Confidence 5678888887552 1111 12345578999999999997765433333 34567 9999999884 3
Q ss_pred ChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 152 STDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 152 ~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
+... +.....+++|++|+|++|.++..... +...+++|++|++++|....+.+..+ ..+++|++|++++|.
T Consensus 112 ~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 112 RYLP-PHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTF----QATTSLQNLQLSSNR 182 (597)
T ss_dssp CCCC-TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTT----TTCTTCCEEECTTSC
T ss_pred CCCC-HHHHcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhhh----hcCCcCcEEECcCCC
Confidence 3211 12235689999999999998765422 23467899999999988765544333 568999999999987
Q ss_pred cccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHH
Q 007586 232 LLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLI 311 (597)
Q Consensus 232 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~ 311 (597)
+...+ ...+++|++|++++|.+...
T Consensus 183 l~~~~-------------------------------------------------~~~l~~L~~L~l~~n~l~~l------ 207 (597)
T 3oja_B 183 LTHVD-------------------------------------------------LSLIPSLFHANVSYNLLSTL------ 207 (597)
T ss_dssp CSBCC-------------------------------------------------GGGCTTCSEEECCSSCCSEE------
T ss_pred CCCcC-------------------------------------------------hhhhhhhhhhhcccCccccc------
Confidence 43211 12345667777776665532
Q ss_pred hcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHH
Q 007586 312 QRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNES 391 (597)
Q Consensus 312 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~ 391 (597)
...++|+.|+++++.-.... ....++|+.|++++ +.+++. .....+++|+.|+++.|.++...
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~---~~~~~~L~~L~L~~-----------n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVR---GPVNVELTILKLQH-----------NNLTDT---AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEE---CSCCSCCCEEECCS-----------SCCCCC---GGGGGCTTCSEEECCSSCCCEEE
T ss_pred cCCchhheeeccCCcccccc---cccCCCCCEEECCC-----------CCCCCC---hhhccCCCCCEEECCCCccCCCC
Confidence 13456677776653211000 01125677777776 233332 12235777888888777776544
Q ss_pred HHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccC
Q 007586 392 LECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVG 471 (597)
Q Consensus 392 ~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 471 (597)
...+.. +++|+.|++++.. ++..+. ....+++|+.|+|+++ .++. ....+. .+++|+.|++++|.
T Consensus 271 ~~~~~~-l~~L~~L~Ls~N~----l~~l~~------~~~~l~~L~~L~Ls~N--~l~~-i~~~~~-~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 271 YHPFVK-MQRLERLYISNNR----LVALNL------YGQPIPTLKVLDLSHN--HLLH-VERNQP-QFDRLENLYLDHNS 335 (597)
T ss_dssp SGGGTT-CSSCCEEECTTSC----CCEEEC------SSSCCTTCCEEECCSS--CCCC-CGGGHH-HHTTCSEEECCSSC
T ss_pred HHHhcC-ccCCCEEECCCCC----CCCCCc------ccccCCCCcEEECCCC--CCCc-cCcccc-cCCCCCEEECCCCC
Confidence 444544 7888888887632 221111 1235788999999532 4442 112232 57899999999999
Q ss_pred CCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcc
Q 007586 472 ETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQL 509 (597)
Q Consensus 472 i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 509 (597)
++... ...+++|+.|++++|+++......+...+
T Consensus 336 l~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~ 369 (597)
T 3oja_B 336 IVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRNV 369 (597)
T ss_dssp CCCCC----CCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred CCCcC----hhhcCCCCEEEeeCCCCCChhHHHHHHHH
Confidence 87654 34789999999999999877766665433
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=7.6e-17 Score=172.10 Aligned_cols=419 Identities=13% Similarity=0.020 Sum_probs=214.8
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
|...++++++++.++.-. . ...++ |++|+++++. ++... .....++++|++|+|++|.++...... ...
T Consensus 30 ~~~~~~l~ls~~~L~~ip-~---~~~~~-L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~ 98 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVP-K---DLPPR-TKALSLSQNS-ISELR-MPDISFLSELRVLRLSHNRIRSLDFHV----FLF 98 (562)
T ss_dssp ---CCEEECTTSCCCSCC-T---TSCTT-CCEEECCSSC-CCCCC-GGGTTTCTTCCEEECCSCCCCEECTTT----TTT
T ss_pred cCCCcEEEcCCCCCccCC-C---CCCCC-cCEEECCCCC-ccccC-hhhhccCCCccEEECCCCCCCcCCHHH----hCC
Confidence 455688999998766411 1 12255 9999999983 33211 112346899999999999987654222 235
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHH--HHHhhcccchhccCCCCCCCcchhccccChhh
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLV--NFFQIATALEEFCGGSFNHPPEKYSAVAFPRS 268 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 268 (597)
+++|++|+++++....++.. .+++|++|++++|.+..++ ..+...++|++|+++.....
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~-------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~------------ 159 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC-------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR------------ 159 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC-------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC------------
T ss_pred CCCCCEEECCCCcCCccCcc-------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc------------
Confidence 67999999999887655543 5789999999998765432 34455555666555432111
Q ss_pred hhhcCCcccchhhHHHhhhcCCCC--CEEEecCCcC--ChHHHHHHHhcCCCCCE--EEcCCCc-ChHHHHHHHHhCccC
Q 007586 269 ICRLGLSYMEQDHMWIIFPFAAML--KKLDLLYALL--NTEDHCLLIQRCPNLEI--LETRNVI-GDRGLEVLARSCKKL 341 (597)
Q Consensus 269 l~~~~~~~~~~~~l~~~~~~~~~L--~~L~Ls~~~l--~~~~~~~l~~~~~~L~~--L~l~~~~-~~~~~~~l~~~~~~L 341 (597)
.. .+..+++| ++|++++|.+ .......+. .+. .+. +.+.++. ...........+++|
T Consensus 160 ----------~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~-~l~-~~~l~l~l~~n~~~~~~~~~~~~~l~~L 223 (562)
T 3a79_B 160 ----------QL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQ-IPN-TTVLHLVFHPNSLFSVQVNMSVNALGHL 223 (562)
T ss_dssp ----------TT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEE-ECC-EEEEEEEECSSSCCCCCCEEEESSEEEE
T ss_pred ----------cC----chhhhhhceeeEEEeecccccccccCccccc-ccC-cceEEEEecCccchhhhhhhcccccceE
Confidence 00 01122333 6666666654 222111100 100 001 1111100 000000000123445
Q ss_pred CeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHh--ccCcccceecccCccccccC-
Q 007586 342 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGAN--LRNLCDFRLVLLDREEKIAD- 418 (597)
Q Consensus 342 ~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~--~~~L~~L~l~~~~~~~~i~~- 418 (597)
+.|+++.+.. .|..+. +........++|+.|++..+.+++..+..+... .++|++|+++++.-...++.
T Consensus 224 ~~L~l~~n~~------~~~~l~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 295 (562)
T 3a79_B 224 QLSNIKLNDE------NCQRLM--TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295 (562)
T ss_dssp EEEEEECCST------THHHHH--HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCC
T ss_pred EEeccccccc------ccchHH--HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccch
Confidence 5555554100 000010 111112345555555555555554444433221 23555555544211000100
Q ss_pred ----------------------CchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHH
Q 007586 419 ----------------------LPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEG 476 (597)
Q Consensus 419 ----------------------~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~ 476 (597)
...+.++..+... .+|++|+++.+ .+..... ...+++|+.|++++|.+++..
T Consensus 296 ~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~-~~L~~L~l~~n--~~~~~~~---~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIKMLSISDT--PFIHMVC---PPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp CCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT-CCCSEEEEESS--CCCCCCC---CSSCCCCCEEECCSSCCCTTT
T ss_pred hhhcccccchheehhhcccceeecChhhhhhhhcc-CcceEEEccCC--CcccccC---ccCCCCceEEECCCCccccch
Confidence 0012333333332 45888888532 2222110 136789999999999998754
Q ss_pred HHHHHhCCCCCCEEEeecCCCcHH-HHHHHHHccccccEEEeeccccCHHHHHHHHhhCCCcEEEEcCCCCCCCCCCCCC
Q 007586 477 LIAFSRGCPNLRKLEMRGCSFSEY-ALAAAVMQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIELIPPRLVSDTDQLGN 555 (597)
Q Consensus 477 ~~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 555 (597)
...+ .++++|+.|++++|.+++. .+......+++|+.|++++|+++...........+.++.-.+..+...+..+...
T Consensus 370 ~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 370 FQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 4333 4789999999999998652 2222234589999999999987642211111233444444444333221111111
Q ss_pred cccccccceeEEEeeccCCC-CCCCCcccccCCCCccccccCC
Q 007586 556 PIVIEHPAHILAYYSLAGQR-TDFPETVRPLDTESLLSVQSCT 597 (597)
Q Consensus 556 ~~~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~~~~~~~~~ 597 (597)
. ..+.+..+.+.+ ..+|+++..+.....|++++|.
T Consensus 449 ~-------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 449 P-------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp C-------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC
T ss_pred c-------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC
Confidence 0 123444444443 3678888888888999999884
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.2e-16 Score=158.02 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=74.7
Q ss_pred cCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHH--
Q 007586 373 GCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDT-- 450 (597)
Q Consensus 373 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~-- 450 (597)
.+++|++|+++.+.++......+.. +++|++|++++. .++. . -..+...+++|+.|+++++ .+++.
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n----~l~~----~-~~~~~~~~~~L~~L~L~~n--~l~~~~~ 239 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMK----QHIL----L-LEIFVDVTSSVECLELRDT--DLDTFHF 239 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECS----CSTT----H-HHHHHHHTTTEEEEEEESC--BCTTCCC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhc-cccCCeecCCCC----cccc----c-hhhhhhhcccccEEECCCC--ccccccc
Confidence 3455555555555544332223333 555555555542 1110 0 0112234556666666421 22221
Q ss_pred -HHHHHHhcCCCCCEEEccccCCCHHHHHHH---HhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCH
Q 007586 451 -GLGYVGQYSLNVRWMLLGCVGETDEGLIAF---SRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASK 524 (597)
Q Consensus 451 -~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 524 (597)
.+... ...+.++.+++..+.+++..+..+ ..++++|+.|++++|.++... ..+...+++|++|++++|+++.
T Consensus 240 ~~l~~~-~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 240 SELSTG-ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp C-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccc-cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC-HHHHhcCCCCCEEEeeCCCccC
Confidence 11111 246678888888888887765543 346889999999999876321 1222457899999999998554
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=2.9e-18 Score=186.22 Aligned_cols=138 Identities=10% Similarity=0.003 Sum_probs=85.2
Q ss_pred cCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHH
Q 007586 373 GCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGL 452 (597)
Q Consensus 373 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~ 452 (597)
.+++++.++++.+.+.......+. .+++|+.|++++......+. ...+..+++|+.|+|+++ .++....
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~--------~~~~~~l~~L~~L~Ls~N--~L~~l~~ 511 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFL--------PDIFTELRNLTFLDLSQC--QLEQLSP 511 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEE--------CSCCTTCTTCCEEECTTS--CCCEECT
T ss_pred cccccccccccccccccccccccc-cchhhhhhhhhhcccccccC--------chhhhhccccCEEECCCC--ccCCcCh
Confidence 456677777766665432222222 36788888887632111110 012346788999999432 4554333
Q ss_pred HHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 453 GYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 453 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
..+. .+++|+.|+|++|+++......+ .++++|+.|++++|.++......+..-.++|+.|++++|+++
T Consensus 512 ~~f~-~l~~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 512 TAFN-SLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTTT-TCTTCCEEECTTSCCCBCCCGGG-TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred HHHc-CCCCCCEEECCCCcCCCCChhHH-hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 3333 78899999999998876543333 378999999999999754433333221268999999998854
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=1.3e-16 Score=164.71 Aligned_cols=142 Identities=14% Similarity=0.008 Sum_probs=76.3
Q ss_pred cCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHH---------H--HHHHHhc-ccC
Q 007586 72 FRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSD---------L--EVLAKNR-GKN 139 (597)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~---------l--~~l~~~~-~~~ 139 (597)
...|+++.++++. ++- +...+.++++|++|++++|.+.... + ..+..+. .+
T Consensus 10 ~~~L~~L~l~~n~----l~~------------iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~- 72 (454)
T 1jl5_A 10 NTFLQEPLRHSSN----LTE------------MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ- 72 (454)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHT-
T ss_pred cccchhhhcccCc----hhh------------CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccC-
Confidence 4567777777542 111 2223347888999999887443211 1 1111111 34
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
+++|++++|. ++. ++. ..++|++|++++|.++... ...++|++|+++++....+.. ..
T Consensus 73 l~~L~l~~~~-l~~--lp~---~~~~L~~L~l~~n~l~~lp--------~~~~~L~~L~l~~n~l~~l~~--------~~ 130 (454)
T 1jl5_A 73 AHELELNNLG-LSS--LPE---LPPHLESLVASCNSLTELP--------ELPQSLKSLLVDNNNLKALSD--------LP 130 (454)
T ss_dssp CSEEECTTSC-CSC--CCS---CCTTCSEEECCSSCCSSCC--------CCCTTCCEEECCSSCCSCCCS--------CC
T ss_pred CCEEEecCCc-ccc--CCC---CcCCCCEEEccCCcCCccc--------cccCCCcEEECCCCccCcccC--------CC
Confidence 8999999883 332 111 2478999999999876532 234789999999887643321 12
Q ss_pred CCCcEEEecCCCcccHHHHHhhcccchhccCCCC
Q 007586 220 RSLSSVKINDCELLDLVNFFQIATALEEFCGGSF 253 (597)
Q Consensus 220 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (597)
++|++|++++|.+..++. +...++|++|++...
T Consensus 131 ~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcc-cCCCCCCCEEECCCC
Confidence 689999999988766553 566777888877654
No 52
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.53 E-value=1.6e-13 Score=137.21 Aligned_cols=196 Identities=17% Similarity=0.195 Sum_probs=108.0
Q ss_pred CCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHH
Q 007586 289 AAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI 368 (597)
Q Consensus 289 ~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 368 (597)
.++|++|+|++|.+++.+...+...+ ...+++|++|+|++ +.+++.++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L--------------------~~~~~~L~~L~Ls~-----------n~l~~~~~~ 119 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVL--------------------GSGRHALDEVNLAS-----------CQLDPAGLR 119 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHH--------------------SSCSSCEEEEECTT-----------CCCCHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHH--------------------hhCCCCceEEEecC-----------CCCCHHHHH
Confidence 35688888888888776655443211 01123455555554 345555555
Q ss_pred HHHHcCcccceeecccccCCHHHHHHHHHh----ccCcccceecccCccccccCCchhHHHHHH---HhCCcCCcEEEee
Q 007586 369 ALAQGCLELEYIAIYVSDITNESLECIGAN----LRNLCDFRLVLLDREEKIADLPLDNGVRAL---LMGCDKLRRFGLY 441 (597)
Q Consensus 369 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l---~~~~~~L~~L~l~ 441 (597)
.+...+++|++|+++.|.+++.+...++.. .++|++|+++++ .++ +.|+..+ +..+++|++|+|+
T Consensus 120 ~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n----~l~----~~~~~~l~~~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 120 TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN----PLT----AAGVAVLMEGLAGNTSVTHLSLL 191 (372)
T ss_dssp HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS----CCH----HHHHHHHHHHHHTCSSCCEEECT
T ss_pred HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC----CCC----hHHHHHHHHHHhcCCCcCEEeCC
Confidence 554445556666666666666555555432 244555555442 222 3333322 2456667777774
Q ss_pred ccCCCCCHHHHHHHHh---cCCCCCEEEccccCCCHHHHHHHHh---CCCCCCEEEeecCCCcHHHHHHHHHcc-cc---
Q 007586 442 LRQGGLTDTGLGYVGQ---YSLNVRWMLLGCVGETDEGLIAFSR---GCPNLRKLEMRGCSFSEYALAAAVMQL-TS--- 511 (597)
Q Consensus 442 ~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~--- 511 (597)
+ +.+++.++..++. ..++|+.|+|++|.+++.+...+.. .+++|+.|++++|.|++.++..+.... ..
T Consensus 192 ~--N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~ 269 (372)
T 3un9_A 192 H--TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269 (372)
T ss_dssp T--SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------
T ss_pred C--CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCcc
Confidence 2 2577766655543 4557777777777777776655543 347777777777777777777666421 11
Q ss_pred ccEEE--eeccccCHH
Q 007586 512 LRYLW--VQGYRASKD 525 (597)
Q Consensus 512 L~~L~--l~~~~i~~~ 525 (597)
|+.+. +.++.++.+
T Consensus 270 L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 270 ARVVVSLTEGTAVSEY 285 (372)
T ss_dssp CEEECCCC----CHHH
T ss_pred chhhHhhhcCCccCHH
Confidence 55555 555555544
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=4.5e-17 Score=176.90 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=90.2
Q ss_pred HHHhcC-CceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEec
Q 007586 68 LRRRFR-NLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLD 146 (597)
Q Consensus 68 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~ 146 (597)
+....| ++++|+++++. +. -++. ..+..+++|++|+|++|.++.-....+ ..+++ |++|+|+
T Consensus 46 vP~~lp~~~~~LdLs~N~-i~---~l~~-----------~~f~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~-L~~L~Ls 108 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNP-LR---HLGS-----------YSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSH-LSTLILT 108 (635)
T ss_dssp CCSSSCTTCCEEECTTSC-CC---EECT-----------TTTTTCTTCCEEECTTCCCCEECTTTT-TTCTT-CCEEECT
T ss_pred cCCCCCcCCCEEEeeCCC-CC---CCCH-----------HHHhCCCCCCEEECCCCcCCCcChhHh-cCCCC-CCEEEcc
Confidence 334455 59999998652 11 1111 112378999999999997654322222 34567 9999999
Q ss_pred CCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEE
Q 007586 147 KCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVK 226 (597)
Q Consensus 147 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~ 226 (597)
++. ++... .....++++|++|+|++|.++...... ...+++|++|+++++....+.. ...+..+++|++|+
T Consensus 109 ~N~-l~~l~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~----~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 109 GNP-IQSLA-LGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKL---PEYFSNLTNLEHLD 179 (635)
T ss_dssp TCC-CCEEC-GGGGTTCTTCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCC---CGGGGGCTTCCEEE
T ss_pred CCc-CCCCC-HHHhcCCCCCCEEECCCCcCCCCChhh----hhcCcccCeeccccCccccCCC---chhhccchhhhhhc
Confidence 883 43211 112346889999999999877554211 2456799999999887543321 22345688999999
Q ss_pred ecCCCccc
Q 007586 227 INDCELLD 234 (597)
Q Consensus 227 L~~~~~~~ 234 (597)
+++|.+..
T Consensus 180 L~~N~l~~ 187 (635)
T 4g8a_A 180 LSSNKIQS 187 (635)
T ss_dssp CCSSCCCE
T ss_pred ccCccccc
Confidence 99987543
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=5.6e-16 Score=159.92 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=81.8
Q ss_pred CCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHH
Q 007586 290 AMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIA 369 (597)
Q Consensus 290 ~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~ 369 (597)
++|++|++++|.+.... . ...+++|++|+++++.-.. + ....++|+.|++++ +.++..
T Consensus 215 ~~L~~L~l~~n~l~~lp--~-~~~l~~L~~L~l~~N~l~~-l---~~~~~~L~~L~l~~-----------N~l~~l---- 272 (454)
T 1jl5_A 215 LSLESIVAGNNILEELP--E-LQNLPFLTTIYADNNLLKT-L---PDLPPSLEALNVRD-----------NYLTDL---- 272 (454)
T ss_dssp TTCCEEECCSSCCSSCC--C-CTTCTTCCEEECCSSCCSS-C---CSCCTTCCEEECCS-----------SCCSCC----
T ss_pred CcccEEECcCCcCCccc--c-cCCCCCCCEEECCCCcCCc-c---cccccccCEEECCC-----------Cccccc----
Confidence 46777777777654221 2 3366677777776532111 0 01235677777765 222221
Q ss_pred HHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCC-cCCcEEEeeccCCCCC
Q 007586 370 LAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGC-DKLRRFGLYLRQGGLT 448 (597)
Q Consensus 370 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~l~ 448 (597)
....++|++|+++.|.++.. ....++|+.|++++. .++. +... ++|+.|++++ +.++
T Consensus 273 -~~~~~~L~~L~ls~N~l~~l-----~~~~~~L~~L~l~~N----~l~~----------i~~~~~~L~~L~Ls~--N~l~ 330 (454)
T 1jl5_A 273 -PELPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSN----EIRS----------LCDLPPSLEELNVSN--NKLI 330 (454)
T ss_dssp -CCCCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSS----CCSE----------ECCCCTTCCEEECCS--SCCS
T ss_pred -CcccCcCCEEECcCCccCcc-----cCcCCcCCEEECcCC----cCCc----------ccCCcCcCCEEECCC--Cccc
Confidence 01235677777766666531 011256777766652 1211 0012 3677777742 1333
Q ss_pred HHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcH--HHHH------------HHHHccccccE
Q 007586 449 DTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSE--YALA------------AAVMQLTSLRY 514 (597)
Q Consensus 449 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~--~~~~------------~l~~~~~~L~~ 514 (597)
+ +...+++|+.|++++|.++... . .+++|+.|++++|.++. .... .+...+++|+.
T Consensus 331 ~-----lp~~~~~L~~L~L~~N~l~~lp--~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~ 400 (454)
T 1jl5_A 331 E-----LPALPPRLERLIASFNHLAEVP--E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQ 400 (454)
T ss_dssp C-----CCCCCTTCCEEECCSSCCSCCC--C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------
T ss_pred c-----ccccCCcCCEEECCCCcccccc--c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCE
Confidence 2 1123567777777777765321 1 45777777777777644 1000 01111267777
Q ss_pred EEeeccccCH
Q 007586 515 LWVQGYRASK 524 (597)
Q Consensus 515 L~l~~~~i~~ 524 (597)
|++++|+++.
T Consensus 401 L~ls~N~l~~ 410 (454)
T 1jl5_A 401 LHVETNPLRE 410 (454)
T ss_dssp ----------
T ss_pred EECCCCcCCc
Confidence 8888777654
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=3.7e-15 Score=149.12 Aligned_cols=281 Identities=11% Similarity=-0.020 Sum_probs=149.2
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
|+.....+.+++.++.-.. ...++ |++|+++++. ++.... .....+++|++|++++|.+++..... ...
T Consensus 30 C~~~~~c~~~~~~l~~iP~----~~~~~-L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~ 98 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPS----GLTEA-VKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSNGINTIEEDS----FSS 98 (353)
T ss_dssp ECTTSEEECCSTTCSSCCT----TCCTT-CCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred CCCCeEeeCCCCCcccccc----ccccc-CcEEECCCCc-CcccCH-HHhccCCCCCEEECCCCccCccCHhh----cCC
Confidence 4445556666554432110 11244 8888888773 332111 11245788888888888776543211 234
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhh
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSIC 270 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 270 (597)
+++|++|+++++....+.... +.++++|++|++++|.+..++ .
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~-------------~-------------------- 141 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYKTLG-------------E-------------------- 141 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHH----HTTCTTCSEEECTTCCCSSSC-------------S--------------------
T ss_pred CCCCCEEECCCCcCCcCCHhH----hCCCccCCEEECCCCCCcccC-------------c--------------------
Confidence 567777777777655444322 245677777777776532100 0
Q ss_pred hcCCcccchhhHHHhhhcCCCCCEEEecCCc-CChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecC
Q 007586 271 RLGLSYMEQDHMWIIFPFAAMLKKLDLLYAL-LNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERG 349 (597)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~ 349 (597)
...+..+++|++|++++|. +....... ..++ ++|++|++++
T Consensus 142 ------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l------------------------~~L~~L~l~~- 183 (353)
T 2z80_A 142 ------------TSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGL------------------------TFLEELEIDA- 183 (353)
T ss_dssp ------------SCSCTTCTTCCEEEEEESSSCCEECTTT-TTTC------------------------CEEEEEEEEE-
T ss_pred ------------hhhhccCCCCcEEECCCCccccccCHHH-ccCC------------------------CCCCEEECCC-
Confidence 0022356678888887774 43321111 1234 4455555554
Q ss_pred CCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHH
Q 007586 350 ADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALL 429 (597)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~ 429 (597)
+.++...... ...+++|++|+++.+.++..... +...+++|+.|++++.. ++..+. ..+. ..
T Consensus 184 ----------n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~----l~~~~~-~~l~-~~ 245 (353)
T 2z80_A 184 ----------SDLQSYEPKS-LKSIQNVSHLILHMKQHILLLEI-FVDVTSSVECLELRDTD----LDTFHF-SELS-TG 245 (353)
T ss_dssp ----------TTCCEECTTT-TTTCSEEEEEEEECSCSTTHHHH-HHHHTTTEEEEEEESCB----CTTCCC-C------
T ss_pred ----------CCcCccCHHH-HhccccCCeecCCCCccccchhh-hhhhcccccEEECCCCc----cccccc-cccc-cc
Confidence 1121110001 12345556666655555433222 22235666666665521 111000 0011 12
Q ss_pred hCCcCCcEEEeeccCCCCCHHHHHHHH---hcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCc
Q 007586 430 MGCDKLRRFGLYLRQGGLTDTGLGYVG---QYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFS 498 (597)
Q Consensus 430 ~~~~~L~~L~l~~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 498 (597)
..++.++.+++. ...+++..+..+. ..+++|+.|++++|.++... ..+..++++|+.|++++|+++
T Consensus 246 ~~~~~l~~l~L~--~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 246 ETNSLIKKFTFR--NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp -CCCCCCEEEEE--SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred cccchhhccccc--cccccCcchhhhHHHHhcccCCCEEECCCCCCCccC-HHHHhcCCCCCEEEeeCCCcc
Confidence 346678899994 2277877665543 37899999999999987432 223357899999999999964
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.51 E-value=5e-16 Score=153.98 Aligned_cols=290 Identities=13% Similarity=0.072 Sum_probs=167.0
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
++.++++++. ++. ++. ...++|+.|++++|.+++..... ...+++|++|+++++....+.+..+ ..+
T Consensus 33 l~~l~~~~~~-l~~--lp~--~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~----~~l 99 (330)
T 1xku_A 33 LRVVQCSDLG-LEK--VPK--DLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAF----APL 99 (330)
T ss_dssp TTEEECTTSC-CCS--CCC--SCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTT----TTC
T ss_pred CeEEEecCCC-ccc--cCc--cCCCCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHHh----cCC
Confidence 8888887652 221 110 12367889999998877654322 2356788888888877654433333 467
Q ss_pred CCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecC
Q 007586 220 RSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLY 299 (597)
Q Consensus 220 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~ 299 (597)
++|++|++++|.+..++ . ...++|++|++++
T Consensus 100 ~~L~~L~Ls~n~l~~l~-----------------------------------------------~--~~~~~L~~L~l~~ 130 (330)
T 1xku_A 100 VKLERLYLSKNQLKELP-----------------------------------------------E--KMPKTLQELRVHE 130 (330)
T ss_dssp TTCCEEECCSSCCSBCC-----------------------------------------------S--SCCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCccC-----------------------------------------------h--hhcccccEEECCC
Confidence 88888888887643211 0 0125688888888
Q ss_pred CcCChHHHHHHHhcCCCCCEEEcCCCc-Ch-HHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCccc
Q 007586 300 ALLNTEDHCLLIQRCPNLEILETRNVI-GD-RGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLEL 377 (597)
Q Consensus 300 ~~l~~~~~~~l~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 377 (597)
|.+.......+ .++++|+.|+++++. .. .........+++|++|++++ +.++.... ...++|
T Consensus 131 n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~l~~----~~~~~L 194 (330)
T 1xku_A 131 NEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-----------TNITTIPQ----GLPPSL 194 (330)
T ss_dssp SCCCBBCHHHH-TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-----------SCCCSCCS----SCCTTC
T ss_pred CcccccCHhHh-cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-----------CccccCCc----cccccC
Confidence 87765544333 377888888887642 21 11122235577788888886 22221100 113678
Q ss_pred ceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHh
Q 007586 378 EYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQ 457 (597)
Q Consensus 378 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~ 457 (597)
++|+++.+.++......+.. +++|+.|++++.. ++..+. ..+..+++|++|+++++ .++. ....+ .
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~----l~~~~~-----~~~~~l~~L~~L~L~~N--~l~~-lp~~l-~ 260 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKG-LNNLAKLGLSFNS----ISAVDN-----GSLANTPHLRELHLNNN--KLVK-VPGGL-A 260 (330)
T ss_dssp SEEECTTSCCCEECTGGGTT-CTTCCEEECCSSC----CCEECT-----TTGGGSTTCCEEECCSS--CCSS-CCTTT-T
T ss_pred CEEECCCCcCCccCHHHhcC-CCCCCEEECCCCc----CceeCh-----hhccCCCCCCEEECCCC--cCcc-CChhh-c
Confidence 88888777776544444444 7778888877632 221110 01235677888888432 3331 11112 2
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHh-----CCCCCCEEEeecCCCcHHHHH-HHHHccccccEEEeeccc
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSR-----GCPNLRKLEMRGCSFSEYALA-AAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~-----~~~~L~~L~l~~~~i~~~~~~-~l~~~~~~L~~L~l~~~~ 521 (597)
.+++|+.|++++|.+++.+...+.. ..+.|+.|++++|++....+. .....+++++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6778888888888876654433321 236788888888886432111 112346778888888774
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=2.2e-14 Score=152.71 Aligned_cols=266 Identities=15% Similarity=0.086 Sum_probs=160.3
Q ss_pred CccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHh
Q 007586 139 NLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARN 218 (597)
Q Consensus 139 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 218 (597)
+++.|+++++. ++. ++. ...++|++|+|++|.++... ..+++|++|++++|....+.. .
T Consensus 41 ~l~~L~ls~n~-L~~--lp~--~l~~~L~~L~L~~N~l~~lp--------~~l~~L~~L~Ls~N~l~~lp~--------~ 99 (622)
T 3g06_A 41 GNAVLNVGESG-LTT--LPD--CLPAHITTLVIPDNNLTSLP--------ALPPELRTLEVSGNQLTSLPV--------L 99 (622)
T ss_dssp CCCEEECCSSC-CSC--CCS--CCCTTCSEEEECSCCCSCCC--------CCCTTCCEEEECSCCCSCCCC--------C
T ss_pred CCcEEEecCCC-cCc--cCh--hhCCCCcEEEecCCCCCCCC--------CcCCCCCEEEcCCCcCCcCCC--------C
Confidence 39999998873 331 111 01368999999999876443 256799999999988654443 5
Q ss_pred CCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEec
Q 007586 219 CRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLL 298 (597)
Q Consensus 219 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls 298 (597)
+++|++|++++|.+..++. ..++|++|+++
T Consensus 100 l~~L~~L~Ls~N~l~~l~~--------------------------------------------------~l~~L~~L~L~ 129 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLPA--------------------------------------------------LPSGLCKLWIF 129 (622)
T ss_dssp CTTCCEEEECSCCCCCCCC--------------------------------------------------CCTTCCEEECC
T ss_pred CCCCCEEECcCCcCCCCCC--------------------------------------------------CCCCcCEEECC
Confidence 6889999999887543221 23445666666
Q ss_pred CCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccc
Q 007586 299 YALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELE 378 (597)
Q Consensus 299 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 378 (597)
+|.++... ..+++|++|+++++.-.. +....++|+.|++++ +.++... ..+++|+
T Consensus 130 ~N~l~~lp-----~~l~~L~~L~Ls~N~l~~----l~~~~~~L~~L~L~~-----------N~l~~l~-----~~~~~L~ 184 (622)
T 3g06_A 130 GNQLTSLP-----VLPPGLQELSVSDNQLAS----LPALPSELCKLWAYN-----------NQLTSLP-----MLPSGLQ 184 (622)
T ss_dssp SSCCSCCC-----CCCTTCCEEECCSSCCSC----CCCCCTTCCEEECCS-----------SCCSCCC-----CCCTTCC
T ss_pred CCCCCcCC-----CCCCCCCEEECcCCcCCC----cCCccCCCCEEECCC-----------CCCCCCc-----ccCCCCc
Confidence 55543311 123556666665431110 001234566666665 2332211 2356677
Q ss_pred eeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhc
Q 007586 379 YIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQY 458 (597)
Q Consensus 379 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~ 458 (597)
.|+++.|.++. +....++|+.|.+.+. .++..+ ..+++|+.|++++ +.++. +...
T Consensus 185 ~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N----~l~~l~---------~~~~~L~~L~Ls~--N~L~~-----lp~~ 239 (622)
T 3g06_A 185 ELSVSDNQLAS-----LPTLPSELYKLWAYNN----RLTSLP---------ALPSGLKELIVSG--NRLTS-----LPVL 239 (622)
T ss_dssp EEECCSSCCSC-----CCCCCTTCCEEECCSS----CCSSCC---------CCCTTCCEEECCS--SCCSC-----CCCC
T ss_pred EEECCCCCCCC-----CCCccchhhEEECcCC----cccccC---------CCCCCCCEEEccC--CccCc-----CCCC
Confidence 77776666653 1112466777776652 222111 1346788888853 24443 1136
Q ss_pred CCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCHHHHHHHHh
Q 007586 459 SLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKDGRDILRM 532 (597)
Q Consensus 459 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 532 (597)
+++|+.|++++|.++... ..+++|+.|++++|.++.. ......+++|+.|++++|++++.....+..
T Consensus 240 l~~L~~L~Ls~N~L~~lp-----~~~~~L~~L~Ls~N~L~~l--p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLP-----MLPSGLLSLSVYRNQLTRL--PESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCCSC--CGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCC-----cccccCcEEeCCCCCCCcC--CHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 788999999888876422 2678899999999987622 222345888999999999888777666543
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.48 E-value=1.8e-15 Score=148.81 Aligned_cols=84 Identities=20% Similarity=0.160 Sum_probs=56.7
Q ss_pred CcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcccc
Q 007586 432 CDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTS 511 (597)
Q Consensus 432 ~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 511 (597)
+++|++|++++ +.++..... + ..+++|+.|++++|.++... .....+++|+.|++++|+++...+......+++
T Consensus 190 l~~L~~L~Ls~--N~l~~l~~~-~-~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 190 FAKLKTLDLSS--NKLAFMGPE-F-QSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp CTTCCEEECCS--SCCCEECGG-G-GGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred cccCCEEECCC--CcCCcchhh-h-cccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 55677777742 134332111 2 25788888888888886421 123467899999999999885566666677888
Q ss_pred ccEEEeeccc
Q 007586 512 LRYLWVQGYR 521 (597)
Q Consensus 512 L~~L~l~~~~ 521 (597)
|+.|++++|.
T Consensus 264 L~~l~l~~~~ 273 (317)
T 3o53_A 264 VQTVAKQTVK 273 (317)
T ss_dssp HHHHHHHHHH
T ss_pred ceEEECCCch
Confidence 8888887665
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.48 E-value=3e-16 Score=155.68 Aligned_cols=289 Identities=15% Similarity=0.043 Sum_probs=168.3
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
++.++++++. ++. ++. ...++|++|++++|.+....... ...+++|++|+++++....+....+ .++
T Consensus 35 l~~l~~~~~~-l~~--ip~--~~~~~l~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~----~~l 101 (332)
T 2ft3_A 35 LRVVQCSDLG-LKA--VPK--EISPDTTLLDLQNNDISELRKDD----FKGLQHLYALVLVNNKISKIHEKAF----SPL 101 (332)
T ss_dssp TTEEECCSSC-CSS--CCS--CCCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGS----TTC
T ss_pred CCEEECCCCC-ccc--cCC--CCCCCCeEEECCCCcCCccCHhH----hhCCCCCcEEECCCCccCccCHhHh----hCc
Confidence 8888887763 221 111 11367899999988876553221 2456788888888877654444333 467
Q ss_pred CCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecC
Q 007586 220 RSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLY 299 (597)
Q Consensus 220 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~ 299 (597)
++|++|++++|.+..++ .. ..++|++|++++
T Consensus 102 ~~L~~L~L~~n~l~~l~-----------------------------------------------~~--~~~~L~~L~l~~ 132 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIP-----------------------------------------------PN--LPSSLVELRIHD 132 (332)
T ss_dssp TTCCEEECCSSCCCSCC-----------------------------------------------SS--CCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCccC-----------------------------------------------cc--ccccCCEEECCC
Confidence 88888888887643211 00 115688888888
Q ss_pred CcCChHHHHHHHhcCCCCCEEEcCCCcC-hH-HHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCccc
Q 007586 300 ALLNTEDHCLLIQRCPNLEILETRNVIG-DR-GLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLEL 377 (597)
Q Consensus 300 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~-~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 377 (597)
|.+....... ..++++|+.|+++++.- .. ........+ +|++|++++ +.++.... ...++|
T Consensus 133 n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-----------n~l~~l~~----~~~~~L 195 (332)
T 2ft3_A 133 NRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-----------AKLTGIPK----DLPETL 195 (332)
T ss_dssp SCCCCCCSGG-GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-----------SBCSSCCS----SSCSSC
T ss_pred CccCccCHhH-hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-----------CCCCccCc----cccCCC
Confidence 7765432222 33677888888876422 11 111111222 688888876 23322100 113678
Q ss_pred ceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHh
Q 007586 378 EYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQ 457 (597)
Q Consensus 378 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~ 457 (597)
++|+++.+.++......+.. +++|+.|++++. .++..+.+ .+..+++|++|++++ +.++. ....+.
T Consensus 196 ~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N----~l~~~~~~-----~~~~l~~L~~L~L~~--N~l~~-lp~~l~- 261 (332)
T 2ft3_A 196 NELHLDHNKIQAIELEDLLR-YSKLYRLGLGHN----QIRMIENG-----SLSFLPTLRELHLDN--NKLSR-VPAGLP- 261 (332)
T ss_dssp SCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSS----CCCCCCTT-----GGGGCTTCCEEECCS--SCCCB-CCTTGG-
T ss_pred CEEECCCCcCCccCHHHhcC-CCCCCEEECCCC----cCCcCChh-----HhhCCCCCCEEECCC--CcCee-cChhhh-
Confidence 88888888776544444444 788888888763 22221111 134678899999953 24441 111233
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhC-----CCCCCEEEeecCCCcHHHH-HHHHHccccccEEEeeccc
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRG-----CPNLRKLEMRGCSFSEYAL-AAAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~i~~~~~-~~l~~~~~~L~~L~l~~~~ 521 (597)
.+++|+.|++++|.+++.+...+... .++|+.|++++|+++...+ ......+++|+.+++++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 68899999998888876655444321 4678999999998652211 1222457889999988874
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.45 E-value=1.4e-13 Score=146.60 Aligned_cols=105 Identities=16% Similarity=0.053 Sum_probs=60.7
Q ss_pred cccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHH
Q 007586 375 LELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGY 454 (597)
Q Consensus 375 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~ 454 (597)
++|+.|+++.|.++. +...+++|+.|++++. .++..+ ..+++|+.|+++++ .++.
T Consensus 201 ~~L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N----~L~~lp---------~~l~~L~~L~Ls~N--~L~~----- 255 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-----LPALPSGLKELIVSGN----RLTSLP---------VLPSELKELMVSGN--RLTS----- 255 (622)
T ss_dssp TTCCEEECCSSCCSS-----CCCCCTTCCEEECCSS----CCSCCC---------CCCTTCCEEECCSS--CCSC-----
T ss_pred chhhEEECcCCcccc-----cCCCCCCCCEEEccCC----ccCcCC---------CCCCcCcEEECCCC--CCCc-----
Confidence 455555555555542 1112356666666542 222211 24567888888431 3331
Q ss_pred HHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHH
Q 007586 455 VGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAV 506 (597)
Q Consensus 455 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 506 (597)
+...+++|+.|++++|.++.. .. ...++++|+.|++++|++++.....+.
T Consensus 256 lp~~~~~L~~L~Ls~N~L~~l-p~-~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 256 LPMLPSGLLSLSVYRNQLTRL-PE-SLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCCCCTTCCEEECCSSCCCSC-CG-GGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCcccccCcEEeCCCCCCCcC-CH-HHhhccccCEEEecCCCCCCcCHHHHH
Confidence 111567888888888888732 12 234788899999999988776665544
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=1.9e-16 Score=155.35 Aligned_cols=84 Identities=11% Similarity=-0.098 Sum_probs=52.0
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccc
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLT 510 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 510 (597)
.+++|+.|++++ ..++..... + ..+++|+.|++++|.+++.....+. ++++|+.|++++|.+++.... . ..++
T Consensus 219 ~l~~L~~L~L~~--N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~-~-~~l~ 291 (313)
T 1ogq_A 219 SDKNTQKIHLAK--NSLAFDLGK-V-GLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQ-G-GNLQ 291 (313)
T ss_dssp TTSCCSEEECCS--SEECCBGGG-C-CCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCC-S-TTGG
T ss_pred cCCCCCEEECCC--CceeeecCc-c-cccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcccccCCC-C-cccc
Confidence 566677777742 123321111 2 2567888888888887654433333 678888888888886533211 1 4478
Q ss_pred cccEEEeeccc
Q 007586 511 SLRYLWVQGYR 521 (597)
Q Consensus 511 ~L~~L~l~~~~ 521 (597)
+|+.+++++|+
T Consensus 292 ~L~~l~l~~N~ 302 (313)
T 1ogq_A 292 RFDVSAYANNK 302 (313)
T ss_dssp GSCGGGTCSSS
T ss_pred ccChHHhcCCC
Confidence 88888888886
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.43 E-value=7.9e-16 Score=150.78 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=17.0
Q ss_pred cCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCC
Q 007586 288 FAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRN 324 (597)
Q Consensus 288 ~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~ 324 (597)
.+++|++|++++|.+...........+++|++|++++
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence 3455666666666543322111122444455554443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.43 E-value=6e-16 Score=151.92 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=33.2
Q ss_pred CCCCCEEEccccCCCHHHHHHHHhCC-CCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCH
Q 007586 459 SLNVRWMLLGCVGETDEGLIAFSRGC-PNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASK 524 (597)
Q Consensus 459 ~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 524 (597)
+++|+.|++++|.++.. .... ++|+.|++++|.+++.. . ...+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~~i-----p~~~~~~L~~L~Ls~N~l~~~p--~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQV-----PKGLPAKLSVLDLSYNRLDRNP--S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCSSC-----CSSCCSEEEEEECCSSCCCSCC--C-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccChh-----hhhccCCceEEECCCCCCCCCh--h-HhhCCCCCEEeccCCCCCC
Confidence 45666666666666521 1111 56777777777765431 1 2346777777777776653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=1.6e-14 Score=142.00 Aligned_cols=248 Identities=12% Similarity=0.005 Sum_probs=152.5
Q ss_pred cHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccc
Q 007586 101 TPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKD 180 (597)
Q Consensus 101 ~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~ 180 (597)
......++..+++|++|++++|.+++.....+ ..+++ |++|++++|. ++... . ...+++|++|++++|.+++..
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~-L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTK-LELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHH-TTCTT-CCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSSEEEEEE
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHh-hCCCc-CCEEECCCCc-CCcch--h-hhhcCCCCEEECcCCcccccc
Confidence 34455566667788888888887766444444 44566 8888888873 32111 1 345788888888888766443
Q ss_pred hhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHH-HHhhcccchhccCCCCCCCcch
Q 007586 181 GDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVN-FFQIATALEEFCGGSFNHPPEK 259 (597)
Q Consensus 181 ~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~ 259 (597)
..++|++|+++++....+.. ..+++|++|++++|.+..+.. .+...++|+.|+++.....
T Consensus 97 ---------~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 157 (317)
T 3o53_A 97 ---------VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--- 157 (317)
T ss_dssp ---------ECTTCCEEECCSSCCSEEEE-------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC---
T ss_pred ---------CCCCcCEEECCCCccCCcCc-------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC---
Confidence 23688888888876543322 235778888888887665432 3445566777766543211
Q ss_pred hccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCc
Q 007586 260 YSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCK 339 (597)
Q Consensus 260 ~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 339 (597)
......+...+++|++|++++|.++... . ...+++|++|+++++.-...... ...++
T Consensus 158 -------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~ 214 (317)
T 3o53_A 158 -------------------TVNFAELAASSDTLEHLNLQYNFIYDVK--G-QVVFAKLKTLDLSSNKLAFMGPE-FQSAA 214 (317)
T ss_dssp -------------------EEEGGGGGGGTTTCCEEECTTSCCCEEE--C-CCCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred -------------------cccHHHHhhccCcCCEEECCCCcCcccc--c-ccccccCCEEECCCCcCCcchhh-hcccC
Confidence 1112223345678889999888866542 1 11478888888886422111111 34567
Q ss_pred cCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecc
Q 007586 340 KLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVL 409 (597)
Q Consensus 340 ~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 409 (597)
+|++|++++ +.++.. ......+++|+.|+++.|.++...+......+++|+.|++.+
T Consensus 215 ~L~~L~L~~-----------N~l~~l--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 215 GVTWISLRN-----------NKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TCSEEECTT-----------SCCCEE--CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccEEECcC-----------Ccccch--hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 888888887 334321 111245678888888888888444444444478888887764
No 65
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=5e-12 Score=126.33 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=75.1
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhc----ccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHH
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNR----GKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHE 186 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~----~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (597)
.+.|++|+|++|.+++.....++..+ ++ |++|+|++| .+++.++..+...+++|++|+|++|.+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~-L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHA-LDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSC-EEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCC-ceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 36788888888888777776666552 34 888888877 5677677666666677888888888777666544443
Q ss_pred Hh-hhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCc
Q 007586 187 LA-LYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCEL 232 (597)
Q Consensus 187 l~-~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 232 (597)
.. ...++|++|++++|.+...+...+......+++|++|+|++|.+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence 33 23556777777766522111222222334556666666666653
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=1e-14 Score=144.46 Aligned_cols=292 Identities=12% Similarity=0.048 Sum_probs=164.7
Q ss_pred CCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCC
Q 007586 113 SLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNT 192 (597)
Q Consensus 113 ~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~ 192 (597)
+++.++++++.++.-. . ...++ ++.|+++++. ++... ......+++|++|+|++|.++...... ...++
T Consensus 32 ~l~~l~~~~~~l~~lp-~---~~~~~-l~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-K---DLPPD-TALLDLQNNK-ITEIK-DGDFKNLKNLHTLILINNKISKISPGA----FAPLV 100 (330)
T ss_dssp ETTEEECTTSCCCSCC-C---SCCTT-CCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred CCeEEEecCCCccccC-c---cCCCC-CeEEECCCCc-CCEeC-hhhhccCCCCCEEECCCCcCCeeCHHH----hcCCC
Confidence 6889999887554311 0 12255 9999999983 33221 112346899999999999987654222 23567
Q ss_pred ccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhc
Q 007586 193 VLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRL 272 (597)
Q Consensus 193 ~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~ 272 (597)
+|++|+++++....+... ..++|++|++++|.+....
T Consensus 101 ~L~~L~Ls~n~l~~l~~~-------~~~~L~~L~l~~n~l~~~~------------------------------------ 137 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVR------------------------------------ 137 (330)
T ss_dssp TCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBC------------------------------------
T ss_pred CCCEEECCCCcCCccChh-------hcccccEEECCCCcccccC------------------------------------
Confidence 999999999876544321 1368999999998754321
Q ss_pred CCcccchhhHHHhhhcCCCCCEEEecCCcCChHHH-HHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCC
Q 007586 273 GLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDH-CLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGAD 351 (597)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 351 (597)
+..+..+++|++|++++|.+...+. .....++++|+.|+++++.-.. ++. ...++|++|++++
T Consensus 138 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~--~~~~~L~~L~l~~--- 201 (330)
T 1xku_A 138 ----------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDG--- 201 (330)
T ss_dssp ----------HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS--SCCTTCSEEECTT---
T ss_pred ----------HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCc--cccccCCEEECCC---
Confidence 1122345566666666666543221 1223356666666666431110 000 0125677777765
Q ss_pred CCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhC
Q 007586 352 EQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMG 431 (597)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~ 431 (597)
+.++......+ ..+++|++|+++.+.++......+.. +++|+.|++++. .++..+. .+..
T Consensus 202 --------n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N----~l~~lp~------~l~~ 261 (330)
T 1xku_A 202 --------NKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNN----KLVKVPG------GLAD 261 (330)
T ss_dssp --------SCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSS----CCSSCCT------TTTT
T ss_pred --------CcCCccCHHHh-cCCCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCC----cCccCCh------hhcc
Confidence 23332211111 34667777777777665433333443 677777777763 2222211 1346
Q ss_pred CcCCcEEEeeccCCCCCHHHHHHHHh-----cCCCCCEEEccccCCCHHHHH-HHHhCCCCCCEEEeecCC
Q 007586 432 CDKLRRFGLYLRQGGLTDTGLGYVGQ-----YSLNVRWMLLGCVGETDEGLI-AFSRGCPNLRKLEMRGCS 496 (597)
Q Consensus 432 ~~~L~~L~l~~~~~~l~~~~~~~l~~-----~~~~L~~L~l~~~~i~~~~~~-~l~~~~~~L~~L~l~~~~ 496 (597)
+++|++|++++ +.++......+.. ..+.|+.|++++|.+....+. .....+++|+.+++++|+
T Consensus 262 l~~L~~L~l~~--N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHN--NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCS--SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCC--CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77888888853 2344322222211 246889999988887543221 223357899999999874
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.40 E-value=1.6e-14 Score=149.60 Aligned_cols=60 Identities=22% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 164 RQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
++|++|+|++|.+....... ...+++|+.|+++++....+....+ .++++|++|+|++|.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAF----NGLASLNTLELFDNW 134 (452)
T ss_dssp TTCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSC
T ss_pred CCccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhc----cCcccCCEEECCCCc
Confidence 45666666666655433211 1234456666665555433322222 345555555555544
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.40 E-value=1.6e-14 Score=149.12 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=30.2
Q ss_pred CCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 164 RQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
++++.|+|++|.+....... ...+++|++|+++++....+....+ .++++|++|+|++|.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~----~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAF----NGLANLNTLELFDNR 123 (440)
T ss_dssp TTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGG----TTCSSCCEEECCSSC
T ss_pred CCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhc----cCCccCCEEECCCCc
Confidence 45666666666655443211 2234556666666555443333222 345556666665554
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.39 E-value=3.6e-15 Score=144.46 Aligned_cols=208 Identities=15% Similarity=0.056 Sum_probs=140.0
Q ss_pred CCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHH
Q 007586 289 AAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI 368 (597)
Q Consensus 289 ~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 368 (597)
.++|++|++++|.++......+ ..+++|++|+++++.-..........+++|++|++++ +..++.....
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------n~~l~~~~~~ 99 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD----------NAQLRSVDPA 99 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS----------CTTCCCCCTT
T ss_pred CCCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC----------CCCccccCHH
Confidence 3679999999999776543333 4789999999987522211112235578899999998 3223322111
Q ss_pred HHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCC
Q 007586 369 ALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLT 448 (597)
Q Consensus 369 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~ 448 (597)
. ...+++|++|+++.+.++......+.. +++|++|++++. .++..+. ..+..+++|++|++++ ..++
T Consensus 100 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n----~l~~~~~-----~~~~~l~~L~~L~l~~--n~l~ 166 (285)
T 1ozn_A 100 T-FHGLGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDN----ALQALPD-----DTFRDLGNLTHLFLHG--NRIS 166 (285)
T ss_dssp T-TTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSS----CCCCCCT-----TTTTTCTTCCEEECCS--SCCC
T ss_pred H-hcCCcCCCEEECCCCcCCEECHhHhhC-CcCCCEEECCCC----cccccCH-----hHhccCCCccEEECCC--Cccc
Confidence 1 235789999999888887543344444 889999999873 2222111 1134688999999953 2454
Q ss_pred HHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 449 DTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 449 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
......+. .+++|+.|++++|.+++.....+. ++++|+.|++++|.+++.....+ ..+++|+.|++++|+++
T Consensus 167 ~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 167 SVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTT-TCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCSSCEE
T ss_pred ccCHHHhc-CccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHc-ccCcccCEEeccCCCcc
Confidence 33222233 689999999999998776544443 78999999999999876444333 45899999999999843
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=5.6e-16 Score=151.89 Aligned_cols=210 Identities=11% Similarity=0.011 Sum_probs=131.1
Q ss_pred hcCCCCCEEEecCCcCChHH--HHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCH
Q 007586 287 PFAAMLKKLDLLYALLNTED--HCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQ 364 (597)
Q Consensus 287 ~~~~~L~~L~Ls~~~l~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 364 (597)
..+++|++|+|++|.+...+ ...+. .+++|++|+++++.-.. +......+++|++|++++ +.++.
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~-----------n~l~~ 115 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH-----------SNLKQ 115 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTT-----------SEEES
T ss_pred hccccCCEEECCCCccCcccCcccccc-cccccCEEECCCCcccc-ChhhcCCCCCCCEEECCC-----------Ccccc
Confidence 45677888888888776432 12222 67888888887642111 111123467788888886 23332
Q ss_pred HHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccC
Q 007586 365 RGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQ 444 (597)
Q Consensus 365 ~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 444 (597)
.........+++|++|+++.+.++......+.. +++|++|++++.. ++. ..+...+..+++|++|++++
T Consensus 116 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~----l~~----~~~~~~~~~l~~L~~L~Ls~-- 184 (306)
T 2z66_A 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNS----FQE----NFLPDIFTELRNLTFLDLSQ-- 184 (306)
T ss_dssp STTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCE----EGG----GEECSCCTTCTTCCEEECTT--
T ss_pred cccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCc----ccc----ccchhHHhhCcCCCEEECCC--
Confidence 211112245788888888877775433333443 7888888887632 211 00111234678899999943
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcc-ccccEEEeeccccC
Q 007586 445 GGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQL-TSLRYLWVQGYRAS 523 (597)
Q Consensus 445 ~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~i~ 523 (597)
..+++.....+. .+++|+.|++++|.+++.....+ .++++|+.|++++|.+++.....+.. + ++|+.|++++|+++
T Consensus 185 n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 185 CQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSCCC-CCTTCCEEECTTCCEE
T ss_pred CCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCCCCcccCHHHHHh-hhccCCEEEccCCCee
Confidence 255554333333 68899999999998876543333 47899999999999986544333332 4 58999999999854
No 71
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.39 E-value=1e-15 Score=150.15 Aligned_cols=248 Identities=8% Similarity=-0.087 Sum_probs=128.6
Q ss_pred ccEEEecCCCCCCh-HHHHHHHHcCCCCCeEecCC-CcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHH
Q 007586 140 LLVLKLDKCCGFST-DGLLHVSRSCRQLRTLFLEE-SSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIAR 217 (597)
Q Consensus 140 L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~L~~-~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 217 (597)
+++|+++++. ++. ..++.....+++|++|++++ +.+.+..... ...+++|++|+++++......+.. +.
T Consensus 52 l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~----~~ 122 (313)
T 1ogq_A 52 VNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDF----LS 122 (313)
T ss_dssp EEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGG----GG
T ss_pred EEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHH----Hh
Confidence 8888888773 221 01222334577888888874 6555332211 234567777777766643222222 24
Q ss_pred hCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEe
Q 007586 218 NCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDL 297 (597)
Q Consensus 218 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L 297 (597)
.+++|++|++++|.+.. .++..+..+++|++|++
T Consensus 123 ~l~~L~~L~Ls~N~l~~----------------------------------------------~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSG----------------------------------------------TLPPSISSLPNLVGITF 156 (313)
T ss_dssp GCTTCCEEECCSSEEES----------------------------------------------CCCGGGGGCTTCCEEEC
T ss_pred CCCCCCEEeCCCCccCC----------------------------------------------cCChHHhcCCCCCeEEC
Confidence 56677777777665321 11223345677888888
Q ss_pred cCCcCChHHHHHHHhcCC-CCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcc
Q 007586 298 LYALLNTEDHCLLIQRCP-NLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLE 376 (597)
Q Consensus 298 s~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 376 (597)
++|.+++.....+. .++ +|+.|+++++.-....+.....++ |++|++++
T Consensus 157 ~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~---------------------------- 206 (313)
T 1ogq_A 157 DGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR---------------------------- 206 (313)
T ss_dssp CSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS----------------------------
T ss_pred cCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC----------------------------
Confidence 77776543333322 444 666666665321111111112222 55555554
Q ss_pred cceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHH
Q 007586 377 LEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVG 456 (597)
Q Consensus 377 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~ 456 (597)
|.++......+.. +++|+.|++++.. ++..+.. +..+++|++|++++ +.+++.....+.
T Consensus 207 --------N~l~~~~~~~~~~-l~~L~~L~L~~N~----l~~~~~~------~~~l~~L~~L~Ls~--N~l~~~~p~~l~ 265 (313)
T 1ogq_A 207 --------NMLEGDASVLFGS-DKNTQKIHLAKNS----LAFDLGK------VGLSKNLNGLDLRN--NRIYGTLPQGLT 265 (313)
T ss_dssp --------SEEEECCGGGCCT-TSCCSEEECCSSE----ECCBGGG------CCCCTTCCEEECCS--SCCEECCCGGGG
T ss_pred --------CcccCcCCHHHhc-CCCCCEEECCCCc----eeeecCc------ccccCCCCEEECcC--CcccCcCChHHh
Confidence 3333222122222 4455555554421 1100000 23567788888842 244433333343
Q ss_pred hcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC
Q 007586 457 QYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS 496 (597)
Q Consensus 457 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 496 (597)
.+++|+.|++++|.+++..... .++++|+.|++++|+
T Consensus 266 -~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 -QLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp -GCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred -cCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 6788999999888876443222 467889999999988
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.38 E-value=3.9e-15 Score=147.63 Aligned_cols=291 Identities=13% Similarity=0.045 Sum_probs=174.7
Q ss_pred CCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCC
Q 007586 113 SLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNT 192 (597)
Q Consensus 113 ~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~ 192 (597)
.++.++++++.++.-. . ...++ ++.|+++++. ++... ......+++|++|++++|.++...... ...++
T Consensus 34 ~l~~l~~~~~~l~~ip-~---~~~~~-l~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP-K---EISPD-TTLLDLQNND-ISELR-KDDFKGLQHLYALVLVNNKISKIHEKA----FSPLR 102 (332)
T ss_dssp ETTEEECCSSCCSSCC-S---CCCTT-CCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCCCEECGGG----STTCT
T ss_pred cCCEEECCCCCccccC-C---CCCCC-CeEEECCCCc-CCccC-HhHhhCCCCCcEEECCCCccCccCHhH----hhCcC
Confidence 6889999888654211 1 11356 9999999983 33211 112356899999999999987654322 34578
Q ss_pred ccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhc
Q 007586 193 VLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRL 272 (597)
Q Consensus 193 ~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~ 272 (597)
+|++|+++++....+... ..++|++|++++|.+..++
T Consensus 103 ~L~~L~L~~n~l~~l~~~-------~~~~L~~L~l~~n~i~~~~------------------------------------ 139 (332)
T 2ft3_A 103 KLQKLYISKNHLVEIPPN-------LPSSLVELRIHDNRIRKVP------------------------------------ 139 (332)
T ss_dssp TCCEEECCSSCCCSCCSS-------CCTTCCEEECCSSCCCCCC------------------------------------
T ss_pred CCCEEECCCCcCCccCcc-------ccccCCEEECCCCccCccC------------------------------------
Confidence 999999999876544321 1278999999998643211
Q ss_pred CCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHH-HHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCC
Q 007586 273 GLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHC-LLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGAD 351 (597)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 351 (597)
+..+..+++|++|++++|.++..+.. .....+ +|+.|+++++.-.. ++. ...++|++|++++
T Consensus 140 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~--~~~~~L~~L~l~~--- 202 (332)
T 2ft3_A 140 ----------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK--DLPETLNELHLDH--- 202 (332)
T ss_dssp ----------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS--SSCSSCSCCBCCS---
T ss_pred ----------HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc--cccCCCCEEECCC---
Confidence 11234567788888887776542211 112233 77777777542111 000 1125788888887
Q ss_pred CCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhC
Q 007586 352 EQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMG 431 (597)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~ 431 (597)
+.++......+ ..+++|++|+++.|.++......+.. +++|+.|++++. .++..+.. +..
T Consensus 203 --------n~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N----~l~~lp~~------l~~ 262 (332)
T 2ft3_A 203 --------NKIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNN----KLSRVPAG------LPD 262 (332)
T ss_dssp --------SCCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTGGGG-CTTCCEEECCSS----CCCBCCTT------GGG
T ss_pred --------CcCCccCHHHh-cCCCCCCEEECCCCcCCcCChhHhhC-CCCCCEEECCCC----cCeecChh------hhc
Confidence 23332211111 35778889999888876544334444 788999988873 23222211 346
Q ss_pred CcCCcEEEeeccCCCCCHHHHHHHHh-----cCCCCCEEEccccCCCHHHH-HHHHhCCCCCCEEEeecCC
Q 007586 432 CDKLRRFGLYLRQGGLTDTGLGYVGQ-----YSLNVRWMLLGCVGETDEGL-IAFSRGCPNLRKLEMRGCS 496 (597)
Q Consensus 432 ~~~L~~L~l~~~~~~l~~~~~~~l~~-----~~~~L~~L~l~~~~i~~~~~-~~l~~~~~~L~~L~l~~~~ 496 (597)
+++|+.|++++ +.++......+.. ..+.|+.|++++|.+....+ ......+++|+.|++++|+
T Consensus 263 l~~L~~L~l~~--N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHT--NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCS--SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCC--CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88899999953 2455443333322 14679999999888763222 1223468999999999874
No 73
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.38 E-value=1.1e-12 Score=113.87 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=91.9
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEcccc-CCCHHHHHHHHhC---CCCCCEEEeecCC-CcHHHHHHHHHc
Q 007586 434 KLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCV-GETDEGLIAFSRG---CPNLRKLEMRGCS-FSEYALAAAVMQ 508 (597)
Q Consensus 434 ~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~l~~~---~~~L~~L~l~~~~-i~~~~~~~l~~~ 508 (597)
+|++|++++| .|++.++..+. .+++|++|+|++| .|||.++..+... +++|++|+|++|. |||.++..+..
T Consensus 62 ~L~~LDLs~~--~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~- 137 (176)
T 3e4g_A 62 KIQAIDATDS--CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH- 137 (176)
T ss_dssp CEEEEEEESC--CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-
T ss_pred eEeEEeCcCC--CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-
Confidence 5999999764 59999999986 8999999999766 5999999999953 5789999999998 99999999874
Q ss_pred cccccEEEeeccc-cCHHH--HHHHHhhCCCcEEEE
Q 007586 509 LTSLRYLWVQGYR-ASKDG--RDILRMVRPFWNIEL 541 (597)
Q Consensus 509 ~~~L~~L~l~~~~-i~~~~--~~~l~~~~~~~~l~~ 541 (597)
+++|++|++++|+ +|+.+ +..+.+..|.++++.
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 9999999999998 99876 788888999988764
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=3.1e-14 Score=148.37 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=48.4
Q ss_pred CcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcccc
Q 007586 432 CDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTS 511 (597)
Q Consensus 432 ~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 511 (597)
+++|+.|++++ +.+++.... +. .+++|+.|++++|.++.. ......+++|+.|++++|+++...+......+++
T Consensus 190 l~~L~~L~Ls~--N~l~~~~~~-~~-~l~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 190 FAKLKTLDLSS--NKLAFMGPE-FQ-SAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp CTTCCEEECCS--SCCCEECGG-GG-GGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred CCCCCEEECCC--CCCCCCCHh-Hc-CCCCccEEEecCCcCccc--chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 55677777742 134432111 22 567788888877777642 1123356788888888888775555555555666
Q ss_pred ccEEEee
Q 007586 512 LRYLWVQ 518 (597)
Q Consensus 512 L~~L~l~ 518 (597)
|+.++++
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 6666554
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.34 E-value=2.3e-13 Score=134.19 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=86.8
Q ss_pred hcCCceEEEeeCCCcccccCCCCCCCCCCccHHHHHHHHhCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCC
Q 007586 71 RFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAASFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCG 150 (597)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~ 150 (597)
..++++.|+++++.- .-+|.. ...+++|++|++++|.+. .....+ ..+++ |++|++++|.
T Consensus 79 ~~~~l~~L~L~~n~l----~~lp~~------------l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~-L~~L~Ls~n~- 138 (328)
T 4fcg_A 79 TQPGRVALELRSVPL----PQFPDQ------------AFRLSHLQHMTIDAAGLM-ELPDTM-QQFAG-LETLTLARNP- 138 (328)
T ss_dssp TSTTCCEEEEESSCC----SSCCSC------------GGGGTTCSEEEEESSCCC-CCCSCG-GGGTT-CSEEEEESCC-
T ss_pred cccceeEEEccCCCc----hhcChh------------hhhCCCCCEEECCCCCcc-chhHHH-hccCC-CCEEECCCCc-
Confidence 457899999997631 112211 125789999999999776 222223 45677 9999999883
Q ss_pred CChHHHHHHHHcCCCCCeEecCCCcccccchhHHH-----HHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEE
Q 007586 151 FSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLH-----ELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSV 225 (597)
Q Consensus 151 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~-----~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L 225 (597)
++ .++.....+++|++|++++|.+.......+. .....+++|++|+++++....+.. .+..+++|++|
T Consensus 139 l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-----~l~~l~~L~~L 211 (328)
T 4fcg_A 139 LR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-----SIANLQNLKSL 211 (328)
T ss_dssp CC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-----GGGGCTTCCEE
T ss_pred cc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-----hhcCCCCCCEE
Confidence 33 2333345689999999999864432211000 001236789999999887653432 23578889999
Q ss_pred EecCCCccc
Q 007586 226 KINDCELLD 234 (597)
Q Consensus 226 ~L~~~~~~~ 234 (597)
++++|.+..
T Consensus 212 ~L~~N~l~~ 220 (328)
T 4fcg_A 212 KIRNSPLSA 220 (328)
T ss_dssp EEESSCCCC
T ss_pred EccCCCCCc
Confidence 998887543
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=3.3e-14 Score=146.75 Aligned_cols=39 Identities=8% Similarity=-0.124 Sum_probs=22.0
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCC
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSF 497 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i 497 (597)
.+++|+.|+|++|.++...... ...+++|+.|++++|++
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDL-FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTT-TSSCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCCCCccChhH-hccccCCCEEEcCCCCc
Confidence 4566666666666665433222 22566667777766663
No 77
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=3.9e-14 Score=146.68 Aligned_cols=39 Identities=8% Similarity=-0.154 Sum_probs=20.1
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCC
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSF 497 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i 497 (597)
.+++|+.|+|++|.++...... ...+++|+.|++++|++
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDL-FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTS-STTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCcCCccChHH-hccccCCCEEEccCCCc
Confidence 4555666666555554322221 22456666666666653
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.31 E-value=1.6e-13 Score=132.76 Aligned_cols=64 Identities=13% Similarity=-0.021 Sum_probs=44.5
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCc
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFS 498 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 498 (597)
.+++|++|++++ ..+++.....+. .+++|+.|++++|.+++.....+ .++++|+.|++++|+++
T Consensus 175 ~l~~L~~L~l~~--n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 175 GLHSLDRLLLHQ--NRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCTTCCEEECCS--SCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCSSCEE
T ss_pred CccccCEEECCC--CcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHc-ccCcccCEEeccCCCcc
Confidence 456677777742 144443333333 67899999999898876554444 48999999999999963
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1.1e-13 Score=144.06 Aligned_cols=238 Identities=12% Similarity=0.004 Sum_probs=138.1
Q ss_pred hCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhh
Q 007586 110 SFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELAL 189 (597)
Q Consensus 110 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 189 (597)
.+++|++|+|++|.+++.....+ ..+++ |+.|+|++|. ++... . ...+++|++|+|++|.+++..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~-L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~--------- 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADL-APFTK-LELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNYVQELL--------- 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGG-TTCTT-CCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSSEEEEEE---------
T ss_pred cCCCccEEEeeCCcCCCCCHHHH-hCCCC-CCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCCcCCCCC---------
Confidence 34477777777776654332223 34455 7777777763 22111 1 345677777777777765433
Q ss_pred hCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHH-HHHhhcccchhccCCCCCCCcchhccccChhh
Q 007586 190 YNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLV-NFFQIATALEEFCGGSFNHPPEKYSAVAFPRS 268 (597)
Q Consensus 190 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 268 (597)
..++|+.|++++|....+.. ..+++|+.|++++|.+.... ..+...++|+.|+++.....
T Consensus 97 ~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------ 157 (487)
T 3oja_A 97 VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID------------ 157 (487)
T ss_dssp ECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC------------
T ss_pred CCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC------------
Confidence 12577777777776543332 13567777777777655442 23344566666666543211
Q ss_pred hhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeec
Q 007586 269 ICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 269 l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
......+...+++|++|+|++|.+++... ...+++|+.|+++++.-....+. ...+++|+.|++++
T Consensus 158 ----------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 158 ----------TVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRN 223 (487)
T ss_dssp ----------EEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTT
T ss_pred ----------CcChHHHhhhCCcccEEecCCCccccccc---cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecC
Confidence 11112233467888888888888765421 11578888888886522211111 34567888888887
Q ss_pred CCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceec
Q 007586 349 GADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLV 408 (597)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 408 (597)
+.++.. ......+++|+.|+++.|.+....+......++.|+.+.+.
T Consensus 224 -----------N~l~~l--p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 -----------NKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -----------SCCCEE--CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------CcCccc--chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 333321 11123567888888888888754554444447777777664
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=9.6e-13 Score=128.88 Aligned_cols=58 Identities=14% Similarity=0.061 Sum_probs=28.3
Q ss_pred CCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCH
Q 007586 460 LNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASK 524 (597)
Q Consensus 460 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 524 (597)
++|++|++++|.++... .. -.++|+.|++++|.+++... ...+++|+.|++++|++++
T Consensus 251 ~~L~~L~Ls~N~l~~lp-~~---~~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVP-KG---LPAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSCC-SC---CCSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCCchh-hh---hcCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCCCCC
Confidence 45555555555554210 00 12566666666666543211 1335666666666666543
No 81
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.28 E-value=1.6e-13 Score=135.44 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=37.6
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccc
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 521 (597)
.+++|+.|++++|.+.......+ .++++|+.|++++|.+.......+ .++++|+.+++..+.
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHL 312 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCEEECCGGG
T ss_pred CCCCCCEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHH-hhccCceEEeCCHHH
Confidence 56677777776665543332223 367788888888877543322222 347778888777665
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.27 E-value=5.8e-14 Score=137.72 Aligned_cols=208 Identities=13% Similarity=-0.020 Sum_probs=122.3
Q ss_pred cCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC------cChHHHHH--HHHhCccCCeEEeecCCCCCCccccc
Q 007586 288 FAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV------IGDRGLEV--LARSCKKLKRLRIERGADEQGMEDEE 359 (597)
Q Consensus 288 ~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~------~~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~~~~ 359 (597)
..++|++|++++|.+. ....+... |+.|+++++ +....... -...+++|++|++++
T Consensus 41 ~~~~L~~l~l~~n~l~--~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~----------- 104 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTEA--DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN----------- 104 (312)
T ss_dssp EEEECTTHHHHCCTTC--CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEE-----------
T ss_pred cCCCceeEeecccccc--cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccC-----------
Confidence 4556888888887762 11122211 444444432 11111111 112478899999987
Q ss_pred cccCHHHHHHH-HHcCcccceeecccccCCHHHHHHHHHh----ccCcccceecccCccccccCCchhHHHHHHHhCCcC
Q 007586 360 GLVSQRGLIAL-AQGCLELEYIAIYVSDITNESLECIGAN----LRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDK 434 (597)
Q Consensus 360 ~~~~~~~l~~l-~~~~~~L~~L~l~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~ 434 (597)
+.++......+ ...+++|++|+++.|.++.. ...+..- +++|++|++++.. ++..+. ..+..+++
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~----l~~~~~-----~~~~~l~~ 174 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH----SLNFSC-----EQVRVFPA 174 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS----CCCCCT-----TTCCCCSS
T ss_pred CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC----CccchH-----HHhccCCC
Confidence 23332111111 13578899999988888764 3334331 2889999988732 221111 11346788
Q ss_pred CcEEEeeccCCCCCHH--HHHHHH-hcCCCCCEEEccccCCCH--HHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcc
Q 007586 435 LRRFGLYLRQGGLTDT--GLGYVG-QYSLNVRWMLLGCVGETD--EGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQL 509 (597)
Q Consensus 435 L~~L~l~~~~~~l~~~--~~~~l~-~~~~~L~~L~l~~~~i~~--~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 509 (597)
|++|++++ +.++.. .+..+. ..+++|+.|++++|.++. .....+..++++|+.|++++|.+++.........+
T Consensus 175 L~~L~Ls~--N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 175 LSTLDLSD--NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp CCEEECCS--CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCEEECCC--CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 99999942 245543 122331 478899999999999873 23344555789999999999987654311112236
Q ss_pred ccccEEEeeccccC
Q 007586 510 TSLRYLWVQGYRAS 523 (597)
Q Consensus 510 ~~L~~L~l~~~~i~ 523 (597)
++|++|++++|+++
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 89999999999876
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.26 E-value=1.2e-12 Score=128.18 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=77.6
Q ss_pred CCCCcEEEecCCccChHHHHHHHHh--cccCccEEEecCCCCCChHHHHHHH-HcCCCCCeEecCCCcccccchhHHHHH
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKN--RGKNLLVLKLDKCCGFSTDGLLHVS-RSCRQLRTLFLEESSIFEKDGDWLHEL 187 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~--~~~~L~~L~L~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~~~~~l~~l 187 (597)
...++.+.+.++.+++..+..+... .++ |++|++++|. ++......+. ..+++|++|+|++|.+.+.....-..-
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSR-LKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSC-CCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCc-eeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 3568899999998888777665443 356 9999999883 2211111111 457899999999998875432111111
Q ss_pred hhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcc
Q 007586 188 ALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELL 233 (597)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~ 233 (597)
...+++|++|+++++....+....+ ..+++|++|++++|.+.
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQV----RAFPALTSLDLSDNPGL 182 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSC----CCCTTCCEEECCSCTTC
T ss_pred hhhccCCCEEEeeCCCcchhhHHHh----ccCCCCCEEECCCCCCc
Confidence 2267899999999887654443332 46788999999998743
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.24 E-value=1.9e-12 Score=126.54 Aligned_cols=192 Identities=16% Similarity=0.148 Sum_probs=137.1
Q ss_pred cCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHH
Q 007586 288 FAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRG 366 (597)
Q Consensus 288 ~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 366 (597)
.+++|++|++++|.+.... . ...+++|+.|+++++ +.+.. . ...+++|++|++++ +.++...
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~-~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~-----------n~l~~~~ 101 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--G-VQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSG-----------NPLKNVS 101 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCS-----------CCCSCCG
T ss_pred HcCCcCEEEeeCCCccCch--h-hhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccC-----------CcCCCch
Confidence 4567999999999866532 2 447899999999875 33211 1 46788999999997 3343321
Q ss_pred HHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCC
Q 007586 367 LIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGG 446 (597)
Q Consensus 367 l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 446 (597)
. ...+++|++|+++.+.+++.. .+. .+++|+.|++++. .++..+. +..+++|+.|+++++ .
T Consensus 102 --~-~~~l~~L~~L~l~~n~l~~~~--~l~-~l~~L~~L~l~~n----~l~~~~~-------l~~l~~L~~L~l~~n--~ 162 (308)
T 1h6u_A 102 --A-IAGLQSIKTLDLTSTQITDVT--PLA-GLSNLQVLYLDLN----QITNISP-------LAGLTNLQYLSIGNA--Q 162 (308)
T ss_dssp --G-GTTCTTCCEEECTTSCCCCCG--GGT-TCTTCCEEECCSS----CCCCCGG-------GGGCTTCCEEECCSS--C
T ss_pred --h-hcCCCCCCEEECCCCCCCCch--hhc-CCCCCCEEECCCC----ccCcCcc-------ccCCCCccEEEccCC--c
Confidence 2 246889999999888886532 344 4899999999873 3332211 457889999999532 4
Q ss_pred CCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCH
Q 007586 447 LTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASK 524 (597)
Q Consensus 447 l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 524 (597)
+++... + ..+++|+.|++++|.+++... ...+++|+.|++++|.+++.. . ...+++|+.|++++|+++.
T Consensus 163 l~~~~~--l-~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 163 VSDLTP--L-ANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS--P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--G-TTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred CCCChh--h-cCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc--c-ccCCCCCCEEEccCCeeec
Confidence 554222 3 378999999999999876543 458899999999999986543 2 3568999999999998754
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.22 E-value=1.9e-11 Score=119.34 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=7.8
Q ss_pred cCCCCCeEecCCCccc
Q 007586 162 SCRQLRTLFLEESSIF 177 (597)
Q Consensus 162 ~~~~L~~L~L~~~~~~ 177 (597)
.+++|++|++++|.+.
T Consensus 83 ~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 83 NLTKITELELSGNPLK 98 (308)
T ss_dssp TCCSCCEEECCSCCCS
T ss_pred cCCCCCEEEccCCcCC
Confidence 3445555555555443
No 86
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.20 E-value=7.9e-11 Score=116.58 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=101.0
Q ss_pred HHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCCHHHHHHHHH-hccCcccceecc
Q 007586 331 LEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGA-NLRNLCDFRLVL 409 (597)
Q Consensus 331 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~ 409 (597)
+..+...+|+|++|+|.+ +..+... .+ ..++|++|++.++.++++.+..++. .+|+|+.|+|..
T Consensus 164 L~~ll~~~P~L~~L~L~g----------~~~l~l~---~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKG----------TNNLSIG---KK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CHHHHHTCTTCCEEEEEC----------CBTCBCC---SC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHhcCCCCcEEEEeC----------CCCceec---cc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 445666778888888876 3111111 11 2677888888777788777777763 367777777642
Q ss_pred cCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHH--hcCCCCCEEEccccCCCHHHHHHHHh--CCC
Q 007586 410 LDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVG--QYSLNVRWMLLGCVGETDEGLIAFSR--GCP 485 (597)
Q Consensus 410 ~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~--~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~ 485 (597)
... .... +.++. .+..+. ..+|+|+.|.+..|.+++.+...+.. .++
T Consensus 229 ~~~--~~~~---~~~~~------------------------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 229 GVE--DYGF---DGDMN------------------------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp BCG--GGTC---CSCGG------------------------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred ccc--cccc---chhHH------------------------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 100 0000 00000 000000 13567777777777776665555543 357
Q ss_pred CCCEEEeecCCCcHHHHHHHH---HccccccEEEeeccccCHHHHHHHHhhCCCcEEEE
Q 007586 486 NLRKLEMRGCSFSEYALAAAV---MQLTSLRYLWVQGYRASKDGRDILRMVRPFWNIEL 541 (597)
Q Consensus 486 ~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~l~~ 541 (597)
+|++|+|+.|.+++.+...+. ..+++|+.|++++|.+++++++.+++.. ..++..
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~ 337 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDV 337 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEEC
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEe
Confidence 888888888778887776665 3468888888888888888888888755 334433
No 87
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.13 E-value=1.3e-09 Score=97.27 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=84.3
Q ss_pred HHHHHHHcCcccceeecccc-cCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccC
Q 007586 366 GLIALAQGCLELEYIAIYVS-DITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQ 444 (597)
Q Consensus 366 ~l~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 444 (597)
.+..+...++.|++|+++.+ .+++.+...++..+ ...++|++|+|++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L------------------------------~~~~~L~~L~Ls~-- 74 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL------------------------------KTNTYVKKFSIVG-- 74 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH------------------------------TTCCSCCEEECTT--
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH------------------------------HhCCCcCEEECcC--
Confidence 34444455666777777666 66666666555421 2344577777732
Q ss_pred CCCCHHHHHHHHh---cCCCCCEEEccccCCCHHHHHHHHhC---CCCCCEEEe--ecCCCcHHHHHHHHH---cccccc
Q 007586 445 GGLTDTGLGYVGQ---YSLNVRWMLLGCVGETDEGLIAFSRG---CPNLRKLEM--RGCSFSEYALAAAVM---QLTSLR 513 (597)
Q Consensus 445 ~~l~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~~---~~~L~~L~l--~~~~i~~~~~~~l~~---~~~~L~ 513 (597)
..+++.+...++. ..+.|++|+|++|.|++.+...++.. .++|++|++ ++|.|++.+...+.. ..++|+
T Consensus 75 n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~ 154 (185)
T 1io0_A 75 TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL 154 (185)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC
T ss_pred CCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC
Confidence 2677776666554 34677888887788888777666644 467888888 777788877665553 347788
Q ss_pred EEEeeccccCHHH
Q 007586 514 YLWVQGYRASKDG 526 (597)
Q Consensus 514 ~L~l~~~~i~~~~ 526 (597)
+|++++|.+++.+
T Consensus 155 ~L~L~~n~i~~~~ 167 (185)
T 1io0_A 155 KFGYHFTQQGPRL 167 (185)
T ss_dssp EEECCCSSHHHHH
T ss_pred EEeccCCCCChHH
Confidence 8888888877665
No 88
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.13 E-value=7.1e-11 Score=102.40 Aligned_cols=103 Identities=20% Similarity=0.161 Sum_probs=74.2
Q ss_pred CcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhc---CCCCCEEEcccc-CCCHHH
Q 007586 401 NLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQY---SLNVRWMLLGCV-GETDEG 476 (597)
Q Consensus 401 ~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~-~i~~~~ 476 (597)
+|+.|+++++ . |+ |.|+..+ ..|++|++|+|++ +..|||.++..++.. +++|++|+|++| +|||.+
T Consensus 62 ~L~~LDLs~~---~-It----d~GL~~L-~~~~~L~~L~L~~-C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 62 KIQAIDATDS---C-IM----SIGFDHM-EGLQYVEKIRLCK-CHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CEEEEEEESC---C-CC----GGGGGGG-TTCSCCCEEEEES-CTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred eEeEEeCcCC---C-cc----HHHHHHh-cCCCCCCEEEeCC-CCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4556666552 2 44 5666554 4677888888865 347888888888842 468999999554 589999
Q ss_pred HHHHHhCCCCCCEEEeecCC-CcHHH--HHHHHHccccccE
Q 007586 477 LIAFSRGCPNLRKLEMRGCS-FSEYA--LAAAVMQLTSLRY 514 (597)
Q Consensus 477 ~~~l~~~~~~L~~L~l~~~~-i~~~~--~~~l~~~~~~L~~ 514 (597)
+..+. +|++|++|++++|+ +|+.+ ...+.+.+|+++.
T Consensus 132 l~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 132 IIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred HHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 98886 78999999999998 88865 4555566787663
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.13 E-value=1.6e-11 Score=117.62 Aligned_cols=175 Identities=14% Similarity=0.089 Sum_probs=83.0
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
+++|++|+++++.+.+.. .+ ..+++ |++|+++++. ++. +. ....+++|++|++++|.++..... ....
T Consensus 40 l~~L~~L~l~~~~i~~~~--~l-~~l~~-L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~----~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ--GI-QYLPN-VRYLALGGNK-LHD--IS-ALKELTNLTYLILTGNQLQSLPNG----VFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCCCCT--TG-GGCTT-CCEEECTTSC-CCC--CG-GGTTCTTCCEEECTTSCCCCCCTT----TTTT
T ss_pred ccceeeeeeCCCCccccc--cc-ccCCC-CcEEECCCCC-CCC--ch-hhcCCCCCCEEECCCCccCccChh----HhcC
Confidence 355666666665443211 11 23455 6666666552 221 11 123456666666666655543321 1223
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhh
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSIC 270 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 270 (597)
+++|++|+++++....+.... +..+++|++|++++|.+..++
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~---------------------------------- 149 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLP---------------------------------- 149 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCC----------------------------------
T ss_pred CcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccC----------------------------------
Confidence 456666666655543232211 234556666666665422100
Q ss_pred hcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeec
Q 007586 271 RLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
+..+..+++|++|++++|.+++.... ....+++|+.|+++++.-..........+++|+.|++++
T Consensus 150 ------------~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 150 ------------KGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp ------------TTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ------------HHHhccCccCCEEECCCCCcCccCHH-HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 11223456677777777765533221 123566666666665321111112224456677777766
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.10 E-value=4e-12 Score=122.23 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=18.5
Q ss_pred CCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCc
Q 007586 461 NVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFS 498 (597)
Q Consensus 461 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 498 (597)
+|+.|++++|.++..... +..++++|+.|++++|+++
T Consensus 201 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEEEEECCSSCCSCCCTT-TTTTCCSCCEEECCSSCBC
T ss_pred cccEEECCCCceeecCHh-HhcccccccEEEccCCccc
Confidence 555555555555432211 1224566666666666543
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.09 E-value=2.1e-13 Score=131.20 Aligned_cols=207 Identities=16% Similarity=0.114 Sum_probs=132.6
Q ss_pred CCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHH
Q 007586 290 AMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIA 369 (597)
Q Consensus 290 ~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~ 369 (597)
++|++|++++|.++......+ .++++|++|+++++.-..........+++|++|++++ +.++......
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-----------NPIQSLALGA 95 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-----------CCCCEECTTT
T ss_pred CCccEEECCCCcccccCHhHh-ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-----------CccCccChhh
Confidence 469999999999776543333 3789999999997522211111235678899999997 3333321111
Q ss_pred HHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCH
Q 007586 370 LAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTD 449 (597)
Q Consensus 370 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~ 449 (597)
...+++|++|+++.+.++......+.. +++|++|++++. .++... +...+..+++|++|+++++ .+++
T Consensus 96 -~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n----~l~~~~----l~~~~~~l~~L~~L~Ls~N--~l~~ 163 (276)
T 2z62_A 96 -FSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHN----LIQSFK----LPEYFSNLTNLEHLDLSSN--KIQS 163 (276)
T ss_dssp -TTTCTTCCEEECTTSCCCCSTTCCCTT-CTTCCEEECCSS----CCCCCC----CCGGGGGCTTCCEEECCSS--CCCE
T ss_pred -hcCCccccEEECCCCCccccCchhccc-CCCCCEEECcCC----ccceec----CchhhccCCCCCEEECCCC--CCCc
Confidence 235789999999888776433223443 789999999873 222110 1112457889999999532 4443
Q ss_pred ---HHHHHHHhcCCCCC-EEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccCH
Q 007586 450 ---TGLGYVGQYSLNVR-WMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASK 524 (597)
Q Consensus 450 ---~~~~~l~~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 524 (597)
..+..+. .++.|. .|++++|.++......+ ...+|+.|++++|.++..... ....+++|+.|++++|+++.
T Consensus 164 ~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 164 IYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp ECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTT-TTTTCCSCCEEECCSSCBCC
T ss_pred CCHHHhhhhh-hccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCHh-HhcccccccEEEccCCcccc
Confidence 3344333 444444 89999999875442211 345899999999997643222 22458999999999998653
No 92
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=6.6e-10 Score=109.97 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=74.9
Q ss_pred CcCCcEEEeeccCCCCCHHHHHHHHh-cCCCCCEEEccc--cC-CCHH---HHHHHH--hCCCCCCEEEeecCCCcHHHH
Q 007586 432 CDKLRRFGLYLRQGGLTDTGLGYVGQ-YSLNVRWMLLGC--VG-ETDE---GLIAFS--RGCPNLRKLEMRGCSFSEYAL 502 (597)
Q Consensus 432 ~~~L~~L~l~~~~~~l~~~~~~~l~~-~~~~L~~L~l~~--~~-i~~~---~~~~l~--~~~~~L~~L~l~~~~i~~~~~ 502 (597)
+++|++|+|. .+.+++..+..++. .+|+|+.|+|+. +. ..+. .+..+. ..+|+|+.|++++|.+++.+.
T Consensus 192 ~~~L~~L~L~--~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEII--SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269 (362)
T ss_dssp CTTCSEEEEE--CSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred CCCCcEEEEe--cCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH
Confidence 5679999996 34688888888874 689999998842 11 1221 111222 247999999999999998877
Q ss_pred HHHHH--ccccccEEEeeccccCHHHHHHHHhh
Q 007586 503 AAAVM--QLTSLRYLWVQGYRASKDGRDILRMV 533 (597)
Q Consensus 503 ~~l~~--~~~~L~~L~l~~~~i~~~~~~~l~~~ 533 (597)
..++. .+++|++|+|+.|.+++.|.+.+...
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDH 302 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence 77764 57899999999999999998888754
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.03 E-value=8.2e-11 Score=112.68 Aligned_cols=191 Identities=14% Similarity=0.013 Sum_probs=117.7
Q ss_pred cccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHH
Q 007586 136 RGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELI 215 (597)
Q Consensus 136 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l 215 (597)
+++ |++|.++++.-.... . ...+++|++|++++|.+.+.. ....+++|++|+++++....+....
T Consensus 40 l~~-L~~L~l~~~~i~~~~---~-l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~---- 104 (272)
T 3rfs_A 40 LNS-IDQIIANNSDIKSVQ---G-IQYLPNVRYLALGGNKLHDIS------ALKELTNLTYLILTGNQLQSLPNGV---- 104 (272)
T ss_dssp HTT-CCEEECTTSCCCCCT---T-GGGCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECTTSCCCCCCTTT----
T ss_pred ccc-eeeeeeCCCCccccc---c-cccCCCCcEEECCCCCCCCch------hhcCCCCCCEEECCCCccCccChhH----
Confidence 455 888888887432211 1 245788899999888876542 1235678888888887755443322
Q ss_pred HHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEE
Q 007586 216 ARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKL 295 (597)
Q Consensus 216 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L 295 (597)
+..+++|++|++++|.+..+ .+..+..+++|++|
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~----------------------------------------------~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSL----------------------------------------------PDGVFDKLTNLTYL 138 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCC----------------------------------------------CTTTTTTCTTCCEE
T ss_pred hcCCcCCCEEECCCCcCCcc----------------------------------------------CHHHhccCCCCCEE
Confidence 24577888888888753211 01123467889999
Q ss_pred EecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCc
Q 007586 296 DLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCL 375 (597)
Q Consensus 296 ~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 375 (597)
++++|.++..... ....+++|+.|+++++.-..........+++|++|++++ +.++...- .....++
T Consensus 139 ~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~~-~~~~~l~ 205 (272)
T 3rfs_A 139 NLAHNQLQSLPKG-VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-----------NQLKSVPD-GVFDRLT 205 (272)
T ss_dssp ECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-----------SCCSCCCT-TTTTTCT
T ss_pred ECCCCccCccCHH-HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC-----------CcCCccCH-HHHhCCc
Confidence 9999987644322 234788899999987522221122234578889999887 23332211 1123578
Q ss_pred ccceeecccccCCHHHHHHHHHhccCcccceec
Q 007586 376 ELEYIAIYVSDITNESLECIGANLRNLCDFRLV 408 (597)
Q Consensus 376 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 408 (597)
+|+.|+++.|.+.. .|++|+.|++.
T Consensus 206 ~L~~L~l~~N~~~~--------~~~~l~~l~~~ 230 (272)
T 3rfs_A 206 SLQYIWLHDNPWDC--------TCPGIRYLSEW 230 (272)
T ss_dssp TCCEEECCSSCBCC--------CTTTTHHHHHH
T ss_pred CCCEEEccCCCccc--------cCcHHHHHHHH
Confidence 88888887776642 25666666554
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.01 E-value=5e-11 Score=114.04 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=41.3
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
+++|+++++. ++... ......+++|++|+|++|.++.... .+...+++|++|+++++....+.... +..+
T Consensus 39 l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l 108 (270)
T 2o6q_A 39 TKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLNDNKLQTLPA----GIFKELKNLETLWVTDNKLQALPIGV----FDQL 108 (270)
T ss_dssp CSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCSSCCSCCCT----TTTSSCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred CCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCCCccCeeCh----hhhcCCCCCCEEECCCCcCCcCCHhH----cccc
Confidence 6666666652 22110 0111345667777777666554331 11233556666666666544333221 2345
Q ss_pred CCCcEEEecCCC
Q 007586 220 RSLSSVKINDCE 231 (597)
Q Consensus 220 ~~L~~L~L~~~~ 231 (597)
++|++|++++|.
T Consensus 109 ~~L~~L~l~~n~ 120 (270)
T 2o6q_A 109 VNLAELRLDRNQ 120 (270)
T ss_dssp SSCCEEECCSSC
T ss_pred cCCCEEECCCCc
Confidence 667777776654
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=7e-10 Score=100.49 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=83.1
Q ss_pred CCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhc
Q 007586 163 CRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIA 242 (597)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~ 242 (597)
+++|++|++++|.+.+... ...+++|++|+++++....+. .+..+++|++|++++|.+.+.
T Consensus 43 l~~L~~L~l~~n~i~~l~~------l~~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~n~l~~~------- 103 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTG------IEYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSD------- 103 (197)
T ss_dssp HHTCCEEEEESSCCSCCTT------GGGCTTCSEEEEESCCCSCCG------GGTTCTTCCEEEEECTTCBGG-------
T ss_pred cCCccEEeccCCCccChHH------HhcCCCCCEEEccCCCCCcch------hhhcCCCCCEEEeECCccCcc-------
Confidence 4566666666666553221 234456666666666432111 123567777777777653210
Q ss_pred ccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEc
Q 007586 243 TALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILET 322 (597)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l 322 (597)
.+..+..+++|++|++++|.+++..+..+. .+++|++|++
T Consensus 104 ---------------------------------------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L 143 (197)
T 4ezg_A 104 ---------------------------------------KIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDL 143 (197)
T ss_dssp ---------------------------------------GSCCCTTCTTCCEEECCSSBCBGGGHHHHT-TCSSCCEEEC
T ss_pred ---------------------------------------cChhhcCCCCCCEEEecCCccCcHhHHHHh-hCCCCCEEEc
Confidence 011123467788888888777765555443 6777777777
Q ss_pred CCC--cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCC
Q 007586 323 RNV--IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDIT 388 (597)
Q Consensus 323 ~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~ 388 (597)
+++ +++. . ....+++|++|++++ +.+++.. ....+++|++|++++|.++
T Consensus 144 ~~n~~i~~~--~-~l~~l~~L~~L~l~~-----------n~i~~~~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 144 SYNGAITDI--M-PLKTLPELKSLNIQF-----------DGVHDYR---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSCTBCCCC--G-GGGGCSSCCEEECTT-----------BCCCCCT---TGGGCSSCCEEEECBC---
T ss_pred cCCCCcccc--H-hhcCCCCCCEEECCC-----------CCCcChH---HhccCCCCCEEEeeCcccC
Confidence 764 3322 1 234567777777776 2333321 1235677777777776664
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=3e-10 Score=102.92 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=58.1
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccC-CCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcc
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVG-ETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQL 509 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 509 (597)
.+++|+.|++++ ..+++..+..+. .+++|+.|++++|. +++.. ...++++|+.|++++|.+++.. ....+
T Consensus 110 ~l~~L~~L~Ls~--n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l 180 (197)
T 4ezg_A 110 GLTSLTLLDISH--SAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR---GIEDF 180 (197)
T ss_dssp TCTTCCEEECCS--SBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT---TGGGC
T ss_pred CCCCCCEEEecC--CccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH---HhccC
Confidence 567788888842 266766666665 67888888888886 66543 2347888888888888876532 23457
Q ss_pred ccccEEEeeccccCH
Q 007586 510 TSLRYLWVQGYRASK 524 (597)
Q Consensus 510 ~~L~~L~l~~~~i~~ 524 (597)
++|+.|++++|++..
T Consensus 181 ~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 181 PKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSCCEEEECBC----
T ss_pred CCCCEEEeeCcccCC
Confidence 888888888887653
No 97
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=1.1e-08 Score=91.33 Aligned_cols=130 Identities=12% Similarity=0.015 Sum_probs=105.2
Q ss_pred ccHHHHHHHHhCCCCcEEEecCC-ccChHHHHHHHHhc---ccCccEEEecCCCCCChHHHHHHH---HcCCCCCeEecC
Q 007586 100 VTPWVEEIAASFNSLKSIHFRRM-IVRDSDLEVLAKNR---GKNLLVLKLDKCCGFSTDGLLHVS---RSCRQLRTLFLE 172 (597)
Q Consensus 100 ~~~~~~~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~---~~~L~~L~L~~~~~~~~~~l~~l~---~~~~~L~~L~L~ 172 (597)
+...+..+....+.|++|+|++| .+++.....++..+ ++ |++|+|++| .+.+.+...++ ...++|++|+|+
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~-L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTY-VKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCS-CCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCC-cCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECc
Confidence 35567778888999999999999 99999988887654 55 999999998 68887765554 456889999999
Q ss_pred CCcccccchhHHHHHhhhCCccceeEe--ecccccccCHHHH---HHHHHhCCCCcEEEecCCCccc
Q 007586 173 ESSIFEKDGDWLHELALYNTVLETLNF--YMTDLIKVNVEDL---ELIARNCRSLSSVKINDCELLD 234 (597)
Q Consensus 173 ~~~~~~~~~~~l~~l~~~~~~L~~L~l--~~~~~~~i~~~~l---~~l~~~~~~L~~L~L~~~~~~~ 234 (597)
+|.+.+.+...+.......++|++|++ +++. +++.+. .......++|++|++++|.+..
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~---i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQP---LGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC---CCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC---CCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 999999987777777777889999999 7777 666664 4445667899999999988653
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.96 E-value=1.6e-09 Score=104.55 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=25.7
Q ss_pred CCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 163 CRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
+++|++|++++|.+++... ...+++|+.|+++++....+. . +..+++|++|++++|.
T Consensus 67 l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~-----~-l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKDLS-----S-LKDLKKLKSLSLEHNG 123 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCGG-----G-GTTCTTCCEEECTTSC
T ss_pred CCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCCCh-----h-hccCCCCCEEECCCCc
Confidence 4555555555555443321 223445555555544432111 1 2344555555555544
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.95 E-value=1.7e-11 Score=117.33 Aligned_cols=87 Identities=17% Similarity=0.066 Sum_probs=53.0
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccc
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLT 510 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 510 (597)
.+++|++|+++++ .++......+ ..+++|+.|+++.|.++......+ .++++|+.|++++|.++......+ ..++
T Consensus 131 ~l~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~-~~l~ 205 (270)
T 2o6q_A 131 SLTKLTYLSLGYN--ELQSLPKGVF-DKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVPEGAF-DSLE 205 (270)
T ss_dssp TCTTCCEEECCSS--CCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTT-TTCT
T ss_pred cCcCCCEEECCCC--cCCccCHhHc-cCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCCHHHh-cccc
Confidence 5666777777421 3332211112 256788888888777765433223 367888888888888653322222 3478
Q ss_pred cccEEEeecccc
Q 007586 511 SLRYLWVQGYRA 522 (597)
Q Consensus 511 ~L~~L~l~~~~i 522 (597)
+|+.|++++|++
T Consensus 206 ~L~~L~l~~N~~ 217 (270)
T 2o6q_A 206 KLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCB
T ss_pred CCCEEEecCCCe
Confidence 888888888874
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.92 E-value=3e-09 Score=102.70 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=93.5
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
+++|++|+++++.+.+. ..+ ..+++ |++|++++|. ++.. .. ...+++|++|++++|.+.+... ...
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~-~~l~~-L~~L~L~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~------l~~ 110 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGI-QYLPN-VTKLFLNGNK-LTDI--KP-LANLKNLGWLFLDENKVKDLSS------LKD 110 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTG-GGCTT-CCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCGGG------GTT
T ss_pred cCcccEEEccCCCcccC--hhH-hcCCC-CCEEEccCCc-cCCC--cc-cccCCCCCEEECCCCcCCCChh------hcc
Confidence 45677777776655432 112 33455 7777777663 2221 11 3456777777777777654321 334
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhh
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSIC 270 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~ 270 (597)
+++|++|+++++....+. -+..+++|+.|++++|.+..+
T Consensus 111 l~~L~~L~L~~n~i~~~~------~l~~l~~L~~L~l~~n~l~~~----------------------------------- 149 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDIN------GLVHLPQLESLYLGNNKITDI----------------------------------- 149 (291)
T ss_dssp CTTCCEEECTTSCCCCCG------GGGGCTTCCEEECCSSCCCCC-----------------------------------
T ss_pred CCCCCEEECCCCcCCCCh------hhcCCCCCCEEEccCCcCCcc-----------------------------------
Confidence 567777777777654331 134567788888877654321
Q ss_pred hcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeec
Q 007586 271 RLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
..+..+++|++|++++|.+.+... ...+++|+.|+++++ +.+. .. ...+++|+.|++++
T Consensus 150 -------------~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 150 -------------TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFS 209 (291)
T ss_dssp -------------GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEE
T ss_pred -------------hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcC
Confidence 012345667777777776554432 346677777777653 2221 11 34567788888876
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=3.8e-09 Score=112.25 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhh
Q 007586 111 FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALY 190 (597)
Q Consensus 111 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~ 190 (597)
+++|+.|+++++.+.+.. .+ ..+++ |+.|+|++|. ++.. .. ...+++|+.|+|++|.+.+.. ....
T Consensus 42 L~~L~~L~l~~n~i~~l~--~l-~~l~~-L~~L~Ls~N~-l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~------~l~~ 107 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ--GI-QYLPN-VTKLFLNGNK-LTDI--KP-LTNLKNLGWLFLDENKIKDLS------SLKD 107 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT--TG-GGCTT-CCEEECTTSC-CCCC--GG-GGGCTTCCEEECCSSCCCCCT------TSTT
T ss_pred CCCCCEEECcCCCCCCCh--HH-ccCCC-CCEEEeeCCC-CCCC--hh-hccCCCCCEEECcCCCCCCCh------hhcc
Confidence 355555555555443311 11 23444 6666665552 2211 11 234566666666666554322 1223
Q ss_pred CCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCc
Q 007586 191 NTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCEL 232 (597)
Q Consensus 191 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 232 (597)
+++|+.|++++|....+. . +..+++|+.|+|++|.+
T Consensus 108 l~~L~~L~Ls~N~l~~l~-----~-l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDIN-----G-LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp CTTCCEEECTTSCCCCCG-----G-GGGCTTCSEEECCSSCC
T ss_pred CCCCCEEEecCCCCCCCc-----c-ccCCCccCEEECCCCcc
Confidence 455666666655543221 1 23456666666666543
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=1.9e-09 Score=114.54 Aligned_cols=170 Identities=13% Similarity=0.129 Sum_probs=106.9
Q ss_pred cccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHH
Q 007586 136 RGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELI 215 (597)
Q Consensus 136 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l 215 (597)
+++ |+.|++++|. +.. ++. ...+++|+.|+|++|.+.+... ...+++|+.|+|+.+....+. -
T Consensus 42 L~~-L~~L~l~~n~-i~~--l~~-l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------~ 104 (605)
T 1m9s_A 42 LNS-IDQIIANNSD-IKS--VQG-IQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS------S 104 (605)
T ss_dssp HTT-CCCCBCTTCC-CCC--CTT-GGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCT------T
T ss_pred CCC-CCEEECcCCC-CCC--ChH-HccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCCh------h
Confidence 355 8888887773 222 111 2457888888888887765432 345667888888777654332 1
Q ss_pred HHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEE
Q 007586 216 ARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKL 295 (597)
Q Consensus 216 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L 295 (597)
+..+++|+.|+|++|.+..+ + .+..+++|+.|
T Consensus 105 l~~l~~L~~L~Ls~N~l~~l-----------------------------------------------~-~l~~l~~L~~L 136 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISDI-----------------------------------------------N-GLVHLPQLESL 136 (605)
T ss_dssp STTCTTCCEEECTTSCCCCC-----------------------------------------------G-GGGGCTTCSEE
T ss_pred hccCCCCCEEEecCCCCCCC-----------------------------------------------c-cccCCCccCEE
Confidence 34567777777777653211 1 12357789999
Q ss_pred EecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCc
Q 007586 296 DLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCL 375 (597)
Q Consensus 296 ~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 375 (597)
+|++|.+.+. ..+..+++|+.|+|+++.-..... ...+++|++|+|++ +.+++. .. ...++
T Consensus 137 ~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~-----------N~i~~l--~~-l~~l~ 197 (605)
T 1m9s_A 137 YLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK-----------NHISDL--RA-LAGLK 197 (605)
T ss_dssp ECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS-----------SCCCBC--GG-GTTCT
T ss_pred ECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC-----------CCCCCC--hH-HccCC
Confidence 9999887764 234578888888888652221111 45678888888887 344332 11 24578
Q ss_pred ccceeecccccCCH
Q 007586 376 ELEYIAIYVSDITN 389 (597)
Q Consensus 376 ~L~~L~l~~~~l~~ 389 (597)
+|+.|+++.|.+..
T Consensus 198 ~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 198 NLDVLELFSQECLN 211 (605)
T ss_dssp TCSEEECCSEEEEC
T ss_pred CCCEEEccCCcCcC
Confidence 88888887777654
No 103
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.83 E-value=5.1e-10 Score=108.06 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=69.2
Q ss_pred hCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhh
Q 007586 110 SFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELAL 189 (597)
Q Consensus 110 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~ 189 (597)
.++++++++++++.++.-. . ...++ ++.|+++++. ++... ......+++|++|+|++|.++.... ..
T Consensus 8 ~l~~l~~l~~~~~~l~~ip-~---~~~~~-l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~------~~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALP-P---DLPKD-TTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRAELTKLQV------DG 74 (290)
T ss_dssp CSTTCCEEECTTSCCSSCC-S---CCCTT-CCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTSCCCEEEC------CS
T ss_pred ccCCccEEECCCCCCCcCC-C---CCCCC-CCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCCCccCcccC------CC
Confidence 5688999999988665321 0 11244 9999998873 33221 1223457889999999988775442 14
Q ss_pred hCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcc
Q 007586 190 YNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELL 233 (597)
Q Consensus 190 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~ 233 (597)
.+++|++|+++++....+.. .+..+++|++|++++|.+.
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPL-----LGQTLPALTVLDVSFNRLT 113 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCC-----CTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCEEECCCCcCCcCch-----hhccCCCCCEEECCCCcCc
Confidence 56788888888887643332 2346778888888887643
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.81 E-value=2.2e-10 Score=110.66 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=39.7
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
+++++++++ +++. ++. ...++++.|+|++|.++...... ...+++|+.|+++++....+... ..+
T Consensus 12 l~~l~~~~~-~l~~--ip~--~~~~~l~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~------~~l 76 (290)
T 1p9a_G 12 HLEVNCDKR-NLTA--LPP--DLPKDTTILHLSENLLYTFSLAT----LMPYTRLTQLNLDRAELTKLQVD------GTL 76 (290)
T ss_dssp CCEEECTTS-CCSS--CCS--CCCTTCCEEECTTSCCSEEEGGG----GTTCTTCCEEECTTSCCCEEECC------SCC
T ss_pred ccEEECCCC-CCCc--CCC--CCCCCCCEEEcCCCcCCccCHHH----hhcCCCCCEEECCCCccCcccCC------CCC
Confidence 666666654 2221 100 11245777777777665443211 23455666666666654333221 345
Q ss_pred CCCcEEEecCCCc
Q 007586 220 RSLSSVKINDCEL 232 (597)
Q Consensus 220 ~~L~~L~L~~~~~ 232 (597)
++|++|++++|.+
T Consensus 77 ~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 77 PVLGTLDLSHNQL 89 (290)
T ss_dssp TTCCEEECCSSCC
T ss_pred CcCCEEECCCCcC
Confidence 6666666666553
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.80 E-value=1.8e-11 Score=114.87 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=119.8
Q ss_pred CCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC--cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHH
Q 007586 290 AMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV--IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGL 367 (597)
Q Consensus 290 ~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l 367 (597)
++|++|++++|.++...... ..++++|++|+++++ +.... ......+++|++|++++ |+.++....
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~----------~n~l~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHA-FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRN----------TRNLTYIDP 98 (239)
T ss_dssp TTCCEEEEESCCCSEECTTT-TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEE----------ETTCCEECT
T ss_pred CcccEEEEeCCcceEECHHH-ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCC----------CCCeeEcCH
Confidence 47999999999977554333 347899999999875 33211 11224678899999986 455543221
Q ss_pred HHHHHcCcccceeecccccCCHHHHHHHHHhccCcc---cceecccCccccccCCchhHHHHHHHhCCcCCc-EEEeecc
Q 007586 368 IALAQGCLELEYIAIYVSDITNESLECIGANLRNLC---DFRLVLLDREEKIADLPLDNGVRALLMGCDKLR-RFGLYLR 443 (597)
Q Consensus 368 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~---~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~-~L~l~~~ 443 (597)
. ....+++|++|+++.+.++. +..+. .+++|+ .|++++. ..++..+.+ .+..+++|+ .|++++
T Consensus 99 ~-~f~~l~~L~~L~l~~n~l~~--lp~~~-~l~~L~~L~~L~l~~N---~~l~~i~~~-----~~~~l~~L~~~L~l~~- 165 (239)
T 2xwt_C 99 D-ALKELPLLKFLGIFNTGLKM--FPDLT-KVYSTDIFFILEITDN---PYMTSIPVN-----AFQGLCNETLTLKLYN- 165 (239)
T ss_dssp T-SEECCTTCCEEEEEEECCCS--CCCCT-TCCBCCSEEEEEEESC---TTCCEECTT-----TTTTTBSSEEEEECCS-
T ss_pred H-HhCCCCCCCEEeCCCCCCcc--ccccc-cccccccccEEECCCC---cchhhcCcc-----cccchhcceeEEEcCC-
Confidence 1 12357889999998877754 12233 367777 7777763 122211110 134677888 888842
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEEccccC-CCHHHHHHHHhCC-CCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccc
Q 007586 444 QGGLTDTGLGYVGQYSLNVRWMLLGCVG-ETDEGLIAFSRGC-PNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 444 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 521 (597)
..++.-... .. ..++|+.|+++.|. ++......+ .++ ++|+.|++++|.++..... .+++|+.|+++++.
T Consensus 166 -n~l~~i~~~-~~-~~~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 166 -NGFTSVQGY-AF-NGTKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNTW 237 (239)
T ss_dssp -CCCCEECTT-TT-TTCEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC-
T ss_pred -CCCcccCHh-hc-CCCCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCCccccCChh----HhccCceeeccCcc
Confidence 234321111 11 22678888888884 764433323 366 8888888888886532111 37788888887764
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.79 E-value=4.9e-09 Score=90.09 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=35.7
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
|+.|++++|. +++..++.....+++|++|++++|.+++. .....+++|+.|+++++..... +......+
T Consensus 19 l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l 87 (149)
T 2je0_A 19 VKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVLAEKC 87 (149)
T ss_dssp CSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHHHHHC
T ss_pred CeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHHhhhC
Confidence 6666666652 22111222223455666666666655433 1122344555555555443211 12223334
Q ss_pred CCCcEEEecCCC
Q 007586 220 RSLSSVKINDCE 231 (597)
Q Consensus 220 ~~L~~L~L~~~~ 231 (597)
++|++|++++|.
T Consensus 88 ~~L~~L~ls~N~ 99 (149)
T 2je0_A 88 PNLTHLNLSGNK 99 (149)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEECCCCc
Confidence 555555555544
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=4.6e-09 Score=90.30 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=59.4
Q ss_pred hhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHH
Q 007586 286 FPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQR 365 (597)
Q Consensus 286 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 365 (597)
+..+++|++|++++|.+.+. .....+++|+.|+++++.-...++.....+++|++|++++ +.+++.
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~-----------N~i~~~ 103 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG-----------NKIKDL 103 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT-----------SCCCSH
T ss_pred HhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC-----------CcCCCh
Confidence 34567788888888876654 2334667777777775432222344445567777777775 344443
Q ss_pred HHHHHHHcCcccceeecccccCCHHHH--HHHHHhccCccccee
Q 007586 366 GLIALAQGCLELEYIAIYVSDITNESL--ECIGANLRNLCDFRL 407 (597)
Q Consensus 366 ~l~~l~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~~L~~L~l 407 (597)
........+++|++|+++.|.+++... ......+++|+.|++
T Consensus 104 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 222223456667777776666654322 112222555655554
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.73 E-value=1.1e-09 Score=103.38 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=81.5
Q ss_pred CCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcc
Q 007586 164 RQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIAT 243 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 243 (597)
++|++|+|++|.+....... ...+++|++|+++++....+....+ ..+++|++|++++|.+..+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~-------- 98 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDAT----FRGLTKLTWLNLDYNQLQTLSAGVF----DDLTELGTLGLANNQLASL-------- 98 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTT----TTCTTCCEEECTTSCCCCC--------
T ss_pred CCCCEEEccCCCcCccCHhH----hcCcccCCEEECCCCcCCccCHhHh----ccCCcCCEEECCCCccccc--------
Confidence 46777777777766543211 2245577777777666543333222 3456677777766653210
Q ss_pred cchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcC
Q 007586 244 ALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETR 323 (597)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~ 323 (597)
.+..+..+++|++|+|++|.++..... ....+++|+.|+++
T Consensus 99 --------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 99 --------------------------------------PLGVFDHLTQLDKLYLGGNQLKSLPSG-VFDRLTKLKELRLN 139 (251)
T ss_dssp --------------------------------------CTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred --------------------------------------ChhHhcccCCCCEEEcCCCcCCCcChh-HhccCCcccEEECc
Confidence 011223566788888887776533221 12356677777776
Q ss_pred CCcChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHHHHHHcCcccceeecccccCC
Q 007586 324 NVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDIT 388 (597)
Q Consensus 324 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~ 388 (597)
++.-..........+++|++|++++ +.++..... ....+++|+.|+++.|.++
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~-----------N~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLST-----------NQLQSVPHG-AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-----------SCCSCCCTT-TTTTCTTCCEEECCSCCBC
T ss_pred CCcCCccCHHHcCcCcCCCEEECCC-----------CcCCccCHH-HHhCCCCCCEEEeeCCcee
Confidence 5421111111123456677777765 223221111 1124566666666666553
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.72 E-value=3.9e-09 Score=99.58 Aligned_cols=63 Identities=17% Similarity=0.107 Sum_probs=26.2
Q ss_pred CCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccc
Q 007586 112 NSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFE 178 (597)
Q Consensus 112 ~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 178 (597)
++++.|+++++.+.......+ ..+++ |++|+++++. ++... ......+++|++|+|++|.++.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~-~~l~~-L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATF-RGLTK-LTWLNLDYNQ-LQTLS-AGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTT-CCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCEEEccCCCcCccCHhHh-cCccc-CCEEECCCCc-CCccC-HhHhccCCcCCEEECCCCcccc
Confidence 345666666554433221111 22344 5555555541 11100 0111234555555555555443
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.70 E-value=2.5e-08 Score=94.64 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=26.2
Q ss_pred CCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeec
Q 007586 289 AAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 289 ~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
+++|++|++++|.+++.. ....+++|+.|+++++ +.+. .....+++|+.|++++
T Consensus 127 l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEE
T ss_pred cccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCC
Confidence 445555555555544432 1234555555555543 2221 1223456667777665
No 111
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.68 E-value=9.1e-09 Score=70.28 Aligned_cols=41 Identities=22% Similarity=0.442 Sum_probs=35.8
Q ss_pred CCCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcccccE
Q 007586 11 NSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRH 54 (597)
Q Consensus 11 ~~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~ 54 (597)
..+||+ ||+.+||+|| +..|+.++++|||+|+.+......|
T Consensus 9 ~~~LP~--eil~~I~~~L-~~~dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 9 WDSLPD--ELLLGIFSCL-CLPELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp CCSSCH--HHHHHHHTTS-CGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred HHHCCH--HHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCChHHH
Confidence 345999 9999999999 9999999999999999998655444
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.68 E-value=2.3e-09 Score=94.34 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=61.8
Q ss_pred hCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHH--HHHHH
Q 007586 430 MGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYAL--AAAVM 507 (597)
Q Consensus 430 ~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~--~~l~~ 507 (597)
..+++|+.|++++ +.+++. +..+...+++|+.|++++|.+++........++++|+.|++++|.+++... .....
T Consensus 68 ~~l~~L~~L~Ls~--N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 68 PKLPKLKKLELSE--NRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144 (168)
T ss_dssp CCCSSCCEEEEES--CCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT
T ss_pred ccCCCCCEEECcC--CcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH
Confidence 3577788888853 244442 223333688999999998988774321223478999999999998765432 23445
Q ss_pred ccccccEEEeecccc
Q 007586 508 QLTSLRYLWVQGYRA 522 (597)
Q Consensus 508 ~~~~L~~L~l~~~~i 522 (597)
.+++|+.|++++|.+
T Consensus 145 ~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 145 LLPQLTYLDGYDRED 159 (168)
T ss_dssp TCSSCCEETTEETTS
T ss_pred hCccCcEecCCCCCh
Confidence 689999999999874
No 113
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.67 E-value=8.9e-10 Score=103.24 Aligned_cols=13 Identities=0% Similarity=0.192 Sum_probs=7.3
Q ss_pred CCCCCeEecCCCc
Q 007586 163 CRQLRTLFLEESS 175 (597)
Q Consensus 163 ~~~L~~L~L~~~~ 175 (597)
+++|++|++++|.
T Consensus 54 l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 54 LPNISRIYVSIDV 66 (239)
T ss_dssp CTTCCEEEEECCS
T ss_pred CCCCcEEeCCCCC
Confidence 5555555555554
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=3.5e-10 Score=119.47 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=67.6
Q ss_pred cCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHH
Q 007586 400 RNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIA 479 (597)
Q Consensus 400 ~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 479 (597)
..|+.|++++. .++..| . +..+++|+.|++++ +.++ .....+. .+++|+.|+|++|.++... .
T Consensus 441 ~~L~~L~Ls~n----~l~~lp------~-~~~l~~L~~L~Ls~--N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~lp--~ 503 (567)
T 1dce_A 441 ADVRVLHLAHK----DLTVLC------H-LEQLLLVTHLDLSH--NRLR-ALPPALA-ALRCLEVLQASDNALENVD--G 503 (567)
T ss_dssp TTCSEEECTTS----CCSSCC------C-GGGGTTCCEEECCS--SCCC-CCCGGGG-GCTTCCEEECCSSCCCCCG--G
T ss_pred cCceEEEecCC----CCCCCc------C-ccccccCcEeecCc--cccc-ccchhhh-cCCCCCEEECCCCCCCCCc--c
Confidence 35677777652 232222 1 33566788888842 2444 1112233 6778888888877776532 2
Q ss_pred HHhCCCCCCEEEeecCCCcHHH-HHHHHHccccccEEEeeccccCHH--HHHHHHhhCCCc
Q 007586 480 FSRGCPNLRKLEMRGCSFSEYA-LAAAVMQLTSLRYLWVQGYRASKD--GRDILRMVRPFW 537 (597)
Q Consensus 480 l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~~~ 537 (597)
..++++|+.|++++|.+++.. ...+ ..+++|+.|++++|+++.. ....+...+|.+
T Consensus 504 -l~~l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 504 -VANLPRLQELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp -GTTCSSCCEEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred -cCCCCCCcEEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 336778888888888765443 2222 3477888888888875432 223333445543
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=1.1e-08 Score=89.87 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=7.8
Q ss_pred cCCCCCeEecCCCccc
Q 007586 162 SCRQLRTLFLEESSIF 177 (597)
Q Consensus 162 ~~~~L~~L~L~~~~~~ 177 (597)
.+++|++|++++|.++
T Consensus 47 ~l~~L~~L~l~~n~l~ 62 (168)
T 2ell_A 47 EFVNLEFLSLINVGLI 62 (168)
T ss_dssp GGGGCCEEEEESSCCC
T ss_pred hCCCCCEEeCcCCCCC
Confidence 3445555555555443
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=2.6e-09 Score=105.25 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=79.2
Q ss_pred CcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHHH
Q 007586 374 CLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLG 453 (597)
Q Consensus 374 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~~ 453 (597)
..++..+.+.. .+.......+...|++|+.+++... .++..+. ..+.+|++|+++++ ..+++.-+-.
T Consensus 201 ~~~~~~l~~~~-~l~~~~~~~l~~~~~~L~~l~L~~n----~i~~I~~-----~aF~~~~~L~~l~l---~~ni~~I~~~ 267 (329)
T 3sb4_A 201 PRDINFLTIEG-KLDNADFKLIRDYMPNLVSLDISKT----NATTIPD-----FTFAQKKYLLKIKL---PHNLKTIGQR 267 (329)
T ss_dssp GGGCSEEEEEE-CCCHHHHHHHHHHCTTCCEEECTTB----CCCEECT-----TTTTTCTTCCEEEC---CTTCCEECTT
T ss_pred ccccceEEEee-eecHHHHHHHHHhcCCCeEEECCCC----CcceecH-----hhhhCCCCCCEEEC---CcccceehHH
Confidence 34566666543 3556666777777899999988752 1221111 12457889999999 5544332222
Q ss_pred HHHhcCCCCC-EEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEe
Q 007586 454 YVGQYSLNVR-WMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWV 517 (597)
Q Consensus 454 ~l~~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l 517 (597)
++. .|++|+ .+.+.. .++..+-.++. +|++|+.|+++++.++..+-.+|. +|++|+.++.
T Consensus 268 aF~-~~~~L~~~l~l~~-~l~~I~~~aF~-~c~~L~~l~l~~n~i~~I~~~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 268 VFS-NCGRLAGTLELPA-SVTAIEFGAFM-GCDNLRYVLATGDKITTLGDELFG-NGVPSKLIYK 328 (329)
T ss_dssp TTT-TCTTCCEEEEECT-TCCEECTTTTT-TCTTEEEEEECSSCCCEECTTTTC-TTCCCCEEEC
T ss_pred Hhh-CChhccEEEEEcc-cceEEchhhhh-CCccCCEEEeCCCccCccchhhhc-CCcchhhhcc
Confidence 222 788999 999965 55443333333 899999999988876443333333 4888888763
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.60 E-value=1.9e-08 Score=105.60 Aligned_cols=24 Identities=8% Similarity=-0.043 Sum_probs=14.3
Q ss_pred CcccceeecccccCCHHHHHHHHH
Q 007586 374 CLELEYIAIYVSDITNESLECIGA 397 (597)
Q Consensus 374 ~~~L~~L~l~~~~l~~~~~~~l~~ 397 (597)
+++|+.|+++.|.++......+..
T Consensus 229 l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCCCCEEEeeCCcCCCcCHHHHHH
Confidence 556666666666666555555444
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.57 E-value=1.6e-08 Score=92.40 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=24.2
Q ss_pred CCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCcChHHHHHHHHhCccCCeEEeec
Q 007586 289 AAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIER 348 (597)
Q Consensus 289 ~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 348 (597)
+++|++|++++|.++..... ....+++|+.|+++++.-..........+++|++|++++
T Consensus 99 l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 44455555555554322111 112344455555543211111111123355666666665
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=7.5e-08 Score=91.28 Aligned_cols=80 Identities=23% Similarity=0.198 Sum_probs=51.6
Q ss_pred CCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCC-cChHHHHHHHHhCccCCeEEeecCCCCCCccccccccCHHHHH
Q 007586 290 AMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNV-IGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLI 368 (597)
Q Consensus 290 ~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~l~ 368 (597)
++|++|++++|.+++.. ....+++|+.|+++++ +.+. . ....+++|++|++++ +.+++.
T Consensus 106 ~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~-----------N~i~~~--- 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHG-----------NEITNT--- 165 (263)
T ss_dssp SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTT-----------SCCCBC---
T ss_pred CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCC-----------CcCcch---
Confidence 56888888888866542 2447788888888864 3332 1 235577888888886 344433
Q ss_pred HHHHcCcccceeecccccCCH
Q 007586 369 ALAQGCLELEYIAIYVSDITN 389 (597)
Q Consensus 369 ~l~~~~~~L~~L~l~~~~l~~ 389 (597)
.....+++|+.|+++.|.++.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHhccCCCCCEEeCCCCcccC
Confidence 222457788888887776643
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.55 E-value=2.1e-08 Score=92.37 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=41.2
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
+++|+++++. ++..........+++|++|+|++|.++...... ...+++|++|+++++....+....+ ..+
T Consensus 34 ~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l 104 (220)
T 2v70_A 34 TAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGA----FEGASGVNEILLTSNRLENVQHKMF----KGL 104 (220)
T ss_dssp CSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCGGGG----TTC
T ss_pred CCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHH----hCCCCCCCEEECCCCccCccCHhHh----cCC
Confidence 5666666552 221100011234666777777776655443211 2234566666666665543333222 345
Q ss_pred CCCcEEEecCCC
Q 007586 220 RSLSSVKINDCE 231 (597)
Q Consensus 220 ~~L~~L~L~~~~ 231 (597)
++|++|++++|.
T Consensus 105 ~~L~~L~Ls~N~ 116 (220)
T 2v70_A 105 ESLKTLMLRSNR 116 (220)
T ss_dssp SSCCEEECTTSC
T ss_pred cCCCEEECCCCc
Confidence 666666666654
No 121
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.53 E-value=6.9e-07 Score=78.91 Aligned_cols=123 Identities=12% Similarity=0.141 Sum_probs=69.5
Q ss_pred HHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCC---cCCcEEEeeccCCCCCHHHHHHHHh---cCCCCC
Q 007586 390 ESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGC---DKLRRFGLYLRQGGLTDTGLGYVGQ---YSLNVR 463 (597)
Q Consensus 390 ~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~---~~L~~L~l~~~~~~l~~~~~~~l~~---~~~~L~ 463 (597)
+.+..+...-+.|++|++++. ..|. +.|+..++..+ ..|++|+|+ ...++|.+...|+. .-+.|+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~n---n~ig----d~ga~~la~aL~~N~~L~~L~L~--~n~igd~ga~alA~aL~~N~tL~ 101 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNM---KRVS----KERIRSLIEAACNSKHIEKFSLA--NTAISDSEARGLIELIETSPSLR 101 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTC---CSSC----HHHHHHHHHHHTTCSCCCEEECT--TSCCBHHHHTTHHHHHHHCSSCC
T ss_pred HHHHHHHhcCCCccEEECCCC---CCCC----HHHHHHHHHHHhhCCCcCEEEcc--CCCCChHHHHHHHHHHhcCCccC
Confidence 344444444466777666541 1333 66665554432 347777773 22666666665554 345677
Q ss_pred EEEccccCCCHHHHHHHHhCC---CCCCEEEeecC---CCcHHHHHHHHH---ccccccEEEeeccc
Q 007586 464 WMLLGCVGETDEGLIAFSRGC---PNLRKLEMRGC---SFSEYALAAAVM---QLTSLRYLWVQGYR 521 (597)
Q Consensus 464 ~L~l~~~~i~~~~~~~l~~~~---~~L~~L~l~~~---~i~~~~~~~l~~---~~~~L~~L~l~~~~ 521 (597)
+|+|+.|.|++.|...++..+ +.|+.|+|++| .+++.+..++++ .-+.|++|+++.+.
T Consensus 102 ~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 102 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp EEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred eEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 777777777777766666544 45777777654 456655444442 23666667666554
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=4.8e-09 Score=103.35 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=60.0
Q ss_pred cCHHHHHHHHHcCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCc-EEEe
Q 007586 362 VSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLR-RFGL 440 (597)
Q Consensus 362 ~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~-~L~l 440 (597)
+.......+...|++|+++++..+.++.-+-.++.. |++|+.+.+.. +++..+ + ..+.+|++|+ .+++
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~-~~~L~~l~l~~-----ni~~I~-~----~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ-KKYLLKIKLPH-----NLKTIG-Q----RVFSNCGRLAGTLEL 281 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT-CTTCCEEECCT-----TCCEEC-T----TTTTTCTTCCEEEEE
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhC-CCCCCEEECCc-----ccceeh-H----HHhhCChhccEEEEE
Confidence 333444444444556666666554443322223333 56666666643 122111 1 1134677788 8888
Q ss_pred eccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEE
Q 007586 441 YLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLE 491 (597)
Q Consensus 441 ~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~ 491 (597)
...++.-+-.++. .|++|+.+++..+.++..+-.++. +|++|+.+.
T Consensus 282 ---~~~l~~I~~~aF~-~c~~L~~l~l~~n~i~~I~~~aF~-~~~~L~~ly 327 (329)
T 3sb4_A 282 ---PASVTAIEFGAFM-GCDNLRYVLATGDKITTLGDELFG-NGVPSKLIY 327 (329)
T ss_dssp ---CTTCCEECTTTTT-TCTTEEEEEECSSCCCEECTTTTC-TTCCCCEEE
T ss_pred ---cccceEEchhhhh-CCccCCEEEeCCCccCccchhhhc-CCcchhhhc
Confidence 4443332222222 678888888877776555444343 788888875
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.53 E-value=4.4e-09 Score=111.01 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=23.1
Q ss_pred hCCCCcEEEecCCccChHHHHHHHHhcccCccEEEecCC
Q 007586 110 SFNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKC 148 (597)
Q Consensus 110 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~ 148 (597)
.+++|+.|+|+++.++ .....+ ..+++ |+.|+++++
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~-L~~L~l~~n 382 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSEL-ESCKE-LQELEPENK 382 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHH-HHHHH-HHHHCTTCH
T ss_pred cCccceeccCChhhHH-hhHHHH-HHHHH-HHHhccccc
Confidence 4678888888888664 223333 44566 888887544
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.40 E-value=4.6e-08 Score=97.61 Aligned_cols=13 Identities=0% Similarity=-0.087 Sum_probs=7.3
Q ss_pred CCcEEEecCCccC
Q 007586 113 SLKSIHFRRMIVR 125 (597)
Q Consensus 113 ~L~~L~L~~~~i~ 125 (597)
.++.|+|+++.++
T Consensus 40 ~l~~L~Ls~N~l~ 52 (361)
T 2xot_A 40 YTALLDLSHNNLS 52 (361)
T ss_dssp TCSEEECCSSCCC
T ss_pred CCCEEECCCCCCC
Confidence 4566666665444
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.38 E-value=9.6e-08 Score=95.28 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=26.8
Q ss_pred cCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 162 SCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
.+++|++|+|++|.+....... ...+++|++|+++++....+.... +..+++|++|+|++|.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEA----FVPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNH 123 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSC
T ss_pred cccccCEEECCCCcCCccChhh----ccCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCc
Confidence 3555666666655554332111 123345555555554433222211 1234445555554443
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.38 E-value=4.7e-08 Score=88.40 Aligned_cols=132 Identities=17% Similarity=0.128 Sum_probs=80.9
Q ss_pred cCcccceeecccccCCHHHHHHHHHhccCcccceecccCccccccCCchhHHHHHHHhCCcCCcEEEeeccCCCCCHHHH
Q 007586 373 GCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLDREEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGL 452 (597)
Q Consensus 373 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~l~~~~~ 452 (597)
.+++|++|+++.+.++.. ..+.. +++|+.|++++. .++..+. ....+++|+.|+++++ .+++ +
T Consensus 46 ~l~~L~~L~ls~n~l~~l--~~~~~-l~~L~~L~l~~n----~l~~l~~------~~~~~~~L~~L~L~~N--~l~~--l 108 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKI--SSLSG-MENLRILSLGRN----LIKKIEN------LDAVADTLEELWISYN--QIAS--L 108 (198)
T ss_dssp HTTTCSEEECSEEEESCC--CCHHH-HTTCCEEEEEEE----EECSCSS------HHHHHHHCSEEEEEEE--ECCC--H
T ss_pred cCCCCCEEECCCCCCccc--ccccc-CCCCCEEECCCC----Ccccccc------hhhcCCcCCEEECcCC--cCCc--C
Confidence 466677777766666542 23433 677777777653 2222221 1223467888888532 4544 2
Q ss_pred HHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHH---------HHHHHHccccccEEEeeccccC
Q 007586 453 GYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYA---------LAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 453 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~---------~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
..+. .+++|+.|++++|.+++........++++|+.|++++|++++.. .......+++|+.|+ ++.++
T Consensus 109 ~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 109 SGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred Cccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 3343 57788999998888876544233447889999999998875442 223345688888887 55554
Q ss_pred H
Q 007586 524 K 524 (597)
Q Consensus 524 ~ 524 (597)
.
T Consensus 186 ~ 186 (198)
T 1ds9_A 186 V 186 (198)
T ss_dssp T
T ss_pred H
Confidence 3
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.38 E-value=5.6e-07 Score=94.55 Aligned_cols=161 Identities=11% Similarity=-0.032 Sum_probs=96.0
Q ss_pred CCCcEEEecCCccChHHHHHHHHhcccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhC
Q 007586 112 NSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYN 191 (597)
Q Consensus 112 ~~L~~L~L~~~~i~~~~l~~l~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~ 191 (597)
++|++|+|++|.++.- . ..+++ |+.|++++| .++. ++. ...+|++|+|++|.++.... .+
T Consensus 80 ~~L~~L~Ls~N~l~~i--p---~~l~~-L~~L~Ls~N-~l~~--ip~---l~~~L~~L~Ls~N~l~~lp~--------~l 139 (571)
T 3cvr_A 80 PQITVLEITQNALISL--P---ELPAS-LEYLDACDN-RLST--LPE---LPASLKHLDVDNNQLTMLPE--------LP 139 (571)
T ss_dssp TTCSEEECCSSCCSCC--C---CCCTT-CCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSCCCC--------CC
T ss_pred CCCCEEECcCCCCccc--c---cccCC-CCEEEccCC-CCCC--cch---hhcCCCEEECCCCcCCCCCC--------cC
Confidence 6788888888866632 1 33466 888888887 3332 222 12378888888888765431 46
Q ss_pred CccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHHhhcccchhccCCCCCCCcchhccccChhhhhh
Q 007586 192 TVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFFQIATALEEFCGGSFNHPPEKYSAVAFPRSICR 271 (597)
Q Consensus 192 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~ 271 (597)
++|+.|++++|.+..++. .+++|++|++++|.+..++. +. ++|+.|+++..... .++.
T Consensus 140 ~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-----~lp~------ 197 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-----SLPA------ 197 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-----SCCC------
T ss_pred ccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-----chhh------
Confidence 788888888887654433 45788888888887666555 22 67777777654221 0000
Q ss_pred cCCcccchhhHH-HhhhcCCCCCEEEecCCcCChHHHHHHHhcCCCCCEEEcCCCc
Q 007586 272 LGLSYMEQDHMW-IIFPFAAMLKKLDLLYALLNTEDHCLLIQRCPNLEILETRNVI 326 (597)
Q Consensus 272 ~~~~~~~~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 326 (597)
++ .+....+.|++|+|++|.++... ..+. .+++|+.|+++++.
T Consensus 198 ----------~~~~L~~~~~~L~~L~Ls~N~l~~lp-~~l~-~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 198 ----------VPVRNHHSEETEIFFRCRENRITHIP-ENIL-SLDPTCTIILEDNP 241 (571)
T ss_dssp ----------CC--------CCEEEECCSSCCCCCC-GGGG-GSCTTEEEECCSSS
T ss_pred ----------HHHhhhcccccceEEecCCCcceecC-HHHh-cCCCCCEEEeeCCc
Confidence 00 01111223478888887766321 1222 47778888887653
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.37 E-value=3.1e-07 Score=81.19 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=5.4
Q ss_pred CCCeEecCCCcc
Q 007586 165 QLRTLFLEESSI 176 (597)
Q Consensus 165 ~L~~L~L~~~~~ 176 (597)
+|++|++++|.+
T Consensus 43 ~L~~L~Ls~N~l 54 (176)
T 1a9n_A 43 QFDAIDFSDNEI 54 (176)
T ss_dssp CCSEEECCSSCC
T ss_pred CCCEEECCCCCC
Confidence 444444444443
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.36 E-value=1.1e-07 Score=85.98 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=33.3
Q ss_pred HHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCc
Q 007586 160 SRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCEL 232 (597)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 232 (597)
...+++|++|++++|.+.... .+. .+++|+.|+++++....+. .....+++|++|++++|.+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~----~l~~L~~L~l~~n~l~~l~-----~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLS----GMENLRILSLGRNLIKKIE-----NLDAVADTLEELWISYNQI 105 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHH----HHTTCCEEEEEEEEECSCS-----SHHHHHHHCSEEEEEEEEC
T ss_pred HhcCCCCCEEECCCCCCcccc--ccc----cCCCCCEEECCCCCccccc-----chhhcCCcCCEEECcCCcC
Confidence 344677777777777655432 122 2346666666666543222 1223345566666666543
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.34 E-value=9.7e-08 Score=87.83 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=34.7
Q ss_pred ccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhC
Q 007586 140 LLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNC 219 (597)
Q Consensus 140 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 219 (597)
++.|+++++ .++... ......+++|++|+|++|.+....... ...+++|++|+++++....+.... +..+
T Consensus 34 l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l 103 (220)
T 2v9t_B 34 ITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDA----FQGLRSLNSLVLYGNKITELPKSL----FEGL 103 (220)
T ss_dssp CCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTT----TTTCSSCCEEECCSSCCCCCCTTT----TTTC
T ss_pred CCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHH----hhCCcCCCEEECCCCcCCccCHhH----ccCC
Confidence 666666655 222110 001123555666666666554332111 123345555555554443222211 1234
Q ss_pred CCCcEEEecCCC
Q 007586 220 RSLSSVKINDCE 231 (597)
Q Consensus 220 ~~L~~L~L~~~~ 231 (597)
++|++|++++|.
T Consensus 104 ~~L~~L~L~~N~ 115 (220)
T 2v9t_B 104 FSLQLLLLNANK 115 (220)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEECCCCC
Confidence 445555555443
No 131
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.34 E-value=4.8e-06 Score=73.54 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=101.2
Q ss_pred ccHHHHHHHHhCCCCcEEEecCC-ccChHHHHHHHHhccc--CccEEEecCCCCCChHHHHHHH---HcCCCCCeEecCC
Q 007586 100 VTPWVEEIAASFNSLKSIHFRRM-IVRDSDLEVLAKNRGK--NLLVLKLDKCCGFSTDGLLHVS---RSCRQLRTLFLEE 173 (597)
Q Consensus 100 ~~~~~~~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~--~L~~L~L~~~~~~~~~~l~~l~---~~~~~L~~L~L~~ 173 (597)
+...+..+...-+.|++|+|+++ .+.++....+++.+.. +|+.|+|++| .+.+.+...++ ..-+.|++|+|++
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 35567777777899999999996 9999998888776521 4999999998 67777755444 4457899999999
Q ss_pred CcccccchhHHHHHhhhCCccceeEeecccccccCHHH---HHHHHHhCCCCcEEEecCCCcc
Q 007586 174 SSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVED---LELIARNCRSLSSVKINDCELL 233 (597)
Q Consensus 174 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~---l~~l~~~~~~L~~L~L~~~~~~ 233 (597)
|.|.+.|...+.........|++|+|+.+....+++.+ +......-+.|++|+++.+...
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 99999998777777777778999999865331266654 4444556688999999876543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.33 E-value=2.1e-07 Score=82.33 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=6.8
Q ss_pred CCCCCeEecCCCcc
Q 007586 163 CRQLRTLFLEESSI 176 (597)
Q Consensus 163 ~~~L~~L~L~~~~~ 176 (597)
+++|++|++++|.+
T Consensus 87 l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 87 LPDLTELILTNNSL 100 (176)
T ss_dssp CTTCCEEECCSCCC
T ss_pred CCCCCEEECCCCcC
Confidence 44455555544444
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.33 E-value=2.7e-07 Score=85.43 Aligned_cols=61 Identities=13% Similarity=0.011 Sum_probs=27.0
Q ss_pred CCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 163 CRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
+++|++|+|++|.+...... ....+++|+.|+++++.+..+.... +..+++|++|++++|.
T Consensus 63 l~~L~~L~L~~N~l~~i~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVG----VFDSLTQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNK 123 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSC
T ss_pred ccCCcEEECCCCCCCCcChh----hcccCCCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCc
Confidence 45555555555554333211 1123345555555554433222211 1244555566555554
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.32 E-value=2.2e-07 Score=86.10 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.0
Q ss_pred CCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCc
Q 007586 164 RQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCEL 232 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 232 (597)
++|++|+|++|.+....... ...+++|+.|+++++....+.... +..+++|+.|++++|.+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~N~l~~i~~~~----~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGV----FDSLINLKELYLGSNQLGALPVGV----FDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCC
T ss_pred CCCCEEEcCCCccCccCHHH----hhCccCCcEEECCCCCCCCcChhh----cccCCCcCEEECCCCcC
Confidence 67888888888776553221 234567888888877765444322 24567788888877654
No 135
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.30 E-value=2.3e-08 Score=91.32 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=18.7
Q ss_pred cCcccceeecccccCCHHHHHHHHHhccCcccceecc
Q 007586 373 GCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVL 409 (597)
Q Consensus 373 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 409 (597)
.+++|++|+++.+.++......+. .+++|++|++++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLST 85 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCS
T ss_pred ccccCcEEECCCCccCccChhhcC-CCCCcCEEECCC
Confidence 466677777766666532211122 255555555554
No 136
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.30 E-value=2.2e-08 Score=92.21 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=57.4
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccc
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLT 510 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 510 (597)
.+++|+.|+|++ +.++.-. ..+...+++|+.|++++|.++......+. ++++|+.|++++|.++......+ ..++
T Consensus 78 ~l~~L~~L~Ls~--N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~-~~l~ 152 (220)
T 2v9t_B 78 GLRSLNSLVLYG--NKITELP-KSLFEGLFSLQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTF-SPLR 152 (220)
T ss_dssp TCSSCCEEECCS--SCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTT-TTCT
T ss_pred CCcCCCEEECCC--CcCCccC-HhHccCCCCCCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHH-hCCC
Confidence 456677777742 1333211 11122577888888888887655433333 67888888888888654332222 3478
Q ss_pred cccEEEeecccc-CHHHHHHHH
Q 007586 511 SLRYLWVQGYRA-SKDGRDILR 531 (597)
Q Consensus 511 ~L~~L~l~~~~i-~~~~~~~l~ 531 (597)
+|+.|++++|++ -+..+.++.
T Consensus 153 ~L~~L~L~~N~~~c~c~l~~l~ 174 (220)
T 2v9t_B 153 AIQTMHLAQNPFICDCHLKWLA 174 (220)
T ss_dssp TCCEEECCSSCEECSGGGHHHH
T ss_pred CCCEEEeCCCCcCCCCccHHHH
Confidence 888888888873 333444443
No 137
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.28 E-value=2.1e-07 Score=85.52 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCc
Q 007586 164 RQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCEL 232 (597)
Q Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 232 (597)
+.+++|+|++|.++.... ......+++|+.|+++++.+..+....+ ..+++|++|++++|.+
T Consensus 32 ~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i~~~~~----~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDIEEGAF----EGASGVNEILLTSNRL 93 (220)
T ss_dssp TTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCC
T ss_pred CCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEECHHHh----CCCCCCCEEECCCCcc
Confidence 456778888777664421 0112345677777777766544433222 3566677777776653
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.06 E-value=2.9e-07 Score=100.30 Aligned_cols=19 Identities=0% Similarity=0.209 Sum_probs=10.9
Q ss_pred HHhCCCCcEEEecCCCccc
Q 007586 216 ARNCRSLSSVKINDCELLD 234 (597)
Q Consensus 216 ~~~~~~L~~L~L~~~~~~~ 234 (597)
+..++.|+.|+|++|.+..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~ 238 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN 238 (727)
T ss_dssp --CCCCCCEEECTTSCCSC
T ss_pred hccCCCCcEEECCCCCCCC
Confidence 3456667777777766443
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.02 E-value=7.9e-08 Score=95.47 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=11.7
Q ss_pred hhcCCCCCEEEecCCcCC
Q 007586 286 FPFAAMLKKLDLLYALLN 303 (597)
Q Consensus 286 ~~~~~~L~~L~Ls~~~l~ 303 (597)
+..+++|++|++++|.+.
T Consensus 100 f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp BCCCTTCCEEEEEEECCS
T ss_pred hhhccccccccccccccc
Confidence 345667777777777654
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.97 E-value=1.9e-06 Score=77.27 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=9.6
Q ss_pred cCCCCCeEecCCCcccc
Q 007586 162 SCRQLRTLFLEESSIFE 178 (597)
Q Consensus 162 ~~~~L~~L~L~~~~~~~ 178 (597)
.+++|++|+|++|.++.
T Consensus 52 ~l~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTG 68 (192)
T ss_dssp GCTTCCEEECCSSCCCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 35556666666665543
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.93 E-value=8.1e-08 Score=95.37 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=10.0
Q ss_pred cCcccceeecccccCC
Q 007586 373 GCLELEYIAIYVSDIT 388 (597)
Q Consensus 373 ~~~~L~~L~l~~~~l~ 388 (597)
.+++|+.|+++.|.++
T Consensus 200 ~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 200 GASGPVILDISRTRIH 215 (350)
T ss_dssp TEECCSEEECTTSCCC
T ss_pred cCcccchhhcCCCCcC
Confidence 4566666666666654
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.84 E-value=1.1e-05 Score=71.00 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=7.5
Q ss_pred CCCCeEecCCCccc
Q 007586 164 RQLRTLFLEESSIF 177 (597)
Q Consensus 164 ~~L~~L~L~~~~~~ 177 (597)
++|++|++++|.+.
T Consensus 28 ~~l~~L~l~~n~l~ 41 (177)
T 2o6r_A 28 SSATRLELESNKLQ 41 (177)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCcEEEeCCCccc
Confidence 45555555555544
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.83 E-value=7.2e-06 Score=73.39 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=32.5
Q ss_pred CCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 165 QLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
+|++|++++|.+...... .....+++|++|+++++.+..+.+..+ ..+++|++|++++|.
T Consensus 30 ~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEPNAF----EGASHIQELQLGENK 89 (192)
T ss_dssp TCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCTTTT----TTCTTCCEEECCSCC
T ss_pred CCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcCHhHc----CCcccCCEEECCCCc
Confidence 567777777765543311 012345566777776666543333222 345666666666655
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.80 E-value=1.7e-05 Score=71.05 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=7.0
Q ss_pred CCCCCeEecCCCccc
Q 007586 163 CRQLRTLFLEESSIF 177 (597)
Q Consensus 163 ~~~L~~L~L~~~~~~ 177 (597)
+++|++|+|++|.++
T Consensus 53 l~~L~~L~Ls~N~i~ 67 (193)
T 2wfh_A 53 YKHLTLIDLSNNRIS 67 (193)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred ccCCCEEECCCCcCC
Confidence 444444444444443
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.79 E-value=1.6e-05 Score=71.21 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=6.7
Q ss_pred hCCCCcEEEecCCC
Q 007586 218 NCRSLSSVKINDCE 231 (597)
Q Consensus 218 ~~~~L~~L~L~~~~ 231 (597)
.+++|+.|++++|.
T Consensus 52 ~l~~L~~L~Ls~N~ 65 (193)
T 2wfh_A 52 NYKHLTLIDLSNNR 65 (193)
T ss_dssp GCTTCCEEECCSSC
T ss_pred cccCCCEEECCCCc
Confidence 34445555555443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.78 E-value=1.5e-05 Score=70.23 Aligned_cols=84 Identities=15% Similarity=0.046 Sum_probs=41.5
Q ss_pred ccCccEEEecCCCCCChHHHHHHHHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHH
Q 007586 137 GKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIA 216 (597)
Q Consensus 137 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~ 216 (597)
++ |++|+++++. ++... ......+++|++|++++|.++..... ....+++|+.|+++++....+.... +
T Consensus 28 ~~-l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~----~ 96 (177)
T 2o6r_A 28 SS-ATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHENKLQSLPNGV----F 96 (177)
T ss_dssp TT-CSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT----T
T ss_pred CC-CcEEEeCCCc-ccEeC-HHHhcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCCCccccCHHH----h
Confidence 44 8888887763 22110 11123467788888877776544321 1123445555555555443222211 1
Q ss_pred HhCCCCcEEEecCCC
Q 007586 217 RNCRSLSSVKINDCE 231 (597)
Q Consensus 217 ~~~~~L~~L~L~~~~ 231 (597)
..+++|++|++++|.
T Consensus 97 ~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 97 DKLTQLKELALDTNQ 111 (177)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCcccCEEECcCCc
Confidence 234555555555543
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.75 E-value=1.8e-05 Score=86.13 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=67.0
Q ss_pred HHcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCCcccHHHHH
Q 007586 160 SRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCELLDLVNFF 239 (597)
Q Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 239 (597)
...+++|+.|+|++|.+....... ..+++|++|+|++|.+..+.. . +..+++|++|+|++|.+..++..+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~-----~~l~~L~~L~Ls~N~l~~lp~-~----~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANI-----FKYDFLTRLYLNGNSLTELPA-E----IKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGG-----GGCCSCSCCBCTTSCCSCCCG-G----GGGGTTCCEEECTTSCCSSCCSSG
T ss_pred hccCCCCcEEECCCCCCCCCChhh-----cCCCCCCEEEeeCCcCcccCh-h----hhCCCCCCEEeCcCCcCCccChhh
Confidence 345677778888777765443211 146677777777776543321 1 246677888888877765555445
Q ss_pred hhcccchhccCCCCCCCcchhccccChhhhhhcCCcccchhhHHHhhhcCCCCCEEEecCCcCChHH
Q 007586 240 QIATALEEFCGGSFNHPPEKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYALLNTED 306 (597)
Q Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 306 (597)
..+++|+.|.+.... + ..+|..+..+++|++|+|++|.+....
T Consensus 290 ~~l~~L~~L~L~~N~----------------------l--~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM----------------------V--TTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp GGGTTCSEEECCSSC----------------------C--CCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred cCCCCCCEEECCCCC----------------------C--CccChhhhcCCCccEEeCCCCccCCCC
Confidence 555566666554321 0 122333456778888888888877544
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.52 E-value=9.2e-05 Score=64.58 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=17.9
Q ss_pred CccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 192 TVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 192 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
++|+.|+++++.+..+....+ .++++|++|+|++|.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~----~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVF----DRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSC
T ss_pred CCCcEEEcCCCcCCccChhhh----cCcccCCEEECCCCC
Confidence 355555555554433322222 345566666666654
No 149
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.47 E-value=2.6e-05 Score=72.19 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=35.1
Q ss_pred CCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcccccEE
Q 007586 13 GMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHI 55 (597)
Q Consensus 13 ~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~l 55 (597)
+||+ ||+.+||+|| +++|++++++|||+|+.++.....|.
T Consensus 7 ~LP~--ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la~D~~LWr 46 (312)
T 3l2o_B 7 RLPI--DVQLYILSFL-SPHDLCQLGSTNHYWNETVRDPILWR 46 (312)
T ss_dssp HSCH--HHHHHHHHTS-CHHHHHHHHTTCHHHHHHHTCHHHHH
T ss_pred hCCH--HHHHHHHhcC-CHHHHHHHHHHHHHHHHHhccchHHH
Confidence 4899 9999999999 99999999999999999985554443
No 150
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.46 E-value=2.4e-05 Score=73.47 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=33.0
Q ss_pred CCCCChHHHHHHhcccCCChhhhh-HHHHhhHHHHHhhcc
Q 007586 12 SGMPDIDTVFECVIPYVEDPKDRD-AISLVCRRWYELDAT 50 (597)
Q Consensus 12 ~~LP~~~eil~~If~~L~~~~d~~-~~~~vcr~W~~~~~~ 50 (597)
..||+ ||+.+||+|| +.++++ +|++|||+|+.++..
T Consensus 52 ~~LP~--ell~~Il~~L-p~~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 52 AELPE--PLLLRVLAEL-PATELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp TSSCH--HHHHHHHHTS-CHHHHHHTGGGTCHHHHHHHTS
T ss_pred hhCCH--HHHHHHHHcC-CHHHHHHHHHHHhHHHHHHhcC
Confidence 45999 9999999999 999999 999999999999743
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.45 E-value=3e-06 Score=85.25 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=26.9
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHcc-ccccEEEeeccc
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQL-TSLRYLWVQGYR 521 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~ 521 (597)
.|++|+.+.+..+ ++..+-.++ .+| +|+.+.+.++.+....-..+ ..+ .+++.|.+-.+.
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF-~~~-~L~~l~l~~n~~~~l~~~~F-~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAF-NNT-GIKEVKVEGTTPPQVFEKVW-YGFPDDITVIRVPAES 381 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSS-SSS-CCCEEEECCSSCCBCCCSSC-CCSCTTCCEEEECGGG
T ss_pred CCCCccEEEECcc-ccEEcHHhC-CCC-CCCEEEEcCCCCcccccccc-cCCCCCccEEEeCHHH
Confidence 4556666666322 222221222 256 77777777665321100111 113 356666665543
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.43 E-value=0.00013 Score=63.89 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=18.8
Q ss_pred CccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 192 TVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 192 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
++|+.|+++++.+..+.... +.++++|++|+|++|.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~ 68 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNK 68 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCC
Confidence 45556666555544332222 2345666666666655
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.31 E-value=1.5e-05 Score=69.73 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=56.2
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccc
Q 007586 433 DKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSL 512 (597)
Q Consensus 433 ~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 512 (597)
++|+.|++++ +.++......+. .+++|+.|+|++|+++...... ..++++|+.|++++|.++...... ...+++|
T Consensus 30 ~~l~~L~L~~--N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~-f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYD--NQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGV-FDKLTQLTQLSLNDNQLKSIPRGA-FDNLKSL 104 (170)
T ss_dssp TTCSEEECCS--SCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTT-TTTCTTC
T ss_pred CCCcEEEcCC--CcCCccChhhhc-CcccCCEEECCCCCcCccChhh-ccCCCCCCEEECCCCccCEeCHHH-hcCCCCC
Confidence 4578888842 234332222222 6788999999888887543322 247889999999999875332221 2357899
Q ss_pred cEEEeeccccC
Q 007586 513 RYLWVQGYRAS 523 (597)
Q Consensus 513 ~~L~l~~~~i~ 523 (597)
+.|++++|+++
T Consensus 105 ~~L~L~~N~~~ 115 (170)
T 3g39_A 105 THIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEeCCCCCC
Confidence 99999999865
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.26 E-value=1.8e-05 Score=69.41 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=55.5
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccc
Q 007586 433 DKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSL 512 (597)
Q Consensus 433 ~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 512 (597)
++|+.|++++ +.++......+. .+++|+.|+|++|+++..... ...++++|+.|++++|.|+.... .....+++|
T Consensus 33 ~~L~~L~Ls~--N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNN--NQITKLEPGVFD-HLVNLQQLYFNSNKLTAIPTG-VFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCS--SCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCcEEEeCC--CCccccCHHHhc-CCcCCCEEECCCCCCCccChh-HhCCcchhhEEECCCCccceeCH-HHhccccCC
Confidence 4578888842 234332222222 678899999988888654322 22478899999999998753221 112357899
Q ss_pred cEEEeeccccC
Q 007586 513 RYLWVQGYRAS 523 (597)
Q Consensus 513 ~~L~l~~~~i~ 523 (597)
+.|++++|++.
T Consensus 108 ~~L~L~~N~~~ 118 (174)
T 2r9u_A 108 THIYLYNNPWD 118 (174)
T ss_dssp SEEECCSSCBC
T ss_pred CEEEeCCCCcc
Confidence 99999999854
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.06 E-value=4.9e-06 Score=83.72 Aligned_cols=83 Identities=12% Similarity=0.076 Sum_probs=48.5
Q ss_pred hCCcCCcEEEeeccCCC------CCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHH
Q 007586 430 MGCDKLRRFGLYLRQGG------LTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALA 503 (597)
Q Consensus 430 ~~~~~L~~L~l~~~~~~------l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 503 (597)
..|++|+.+.+....-. +.+..+ ..|++|+.+.+.. .++..+-.++ .+|++|+.+.+..+- +..+-.
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF----~~c~~L~~l~l~~-~i~~I~~~aF-~~c~~L~~l~lp~~l-~~I~~~ 340 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCL----EGCPKLARFEIPE-SIRILGQGLL-GGNRKVTQLTIPANV-TQINFS 340 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTT----TTCTTCCEECCCT-TCCEECTTTT-TTCCSCCEEEECTTC-CEECTT
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHh----hCCccCCeEEeCC-ceEEEhhhhh-cCCCCccEEEECccc-cEEcHH
Confidence 46777888877321001 222222 2678888888863 3443333333 378999999996653 211112
Q ss_pred HHHHccccccEEEeeccc
Q 007586 504 AAVMQLTSLRYLWVQGYR 521 (597)
Q Consensus 504 ~l~~~~~~L~~L~l~~~~ 521 (597)
++ ..| +|+.+.+.++.
T Consensus 341 aF-~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 341 AF-NNT-GIKEVKVEGTT 356 (401)
T ss_dssp SS-SSS-CCCEEEECCSS
T ss_pred hC-CCC-CCCEEEEcCCC
Confidence 22 247 89999999886
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.95 E-value=0.00051 Score=64.12 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=27.5
Q ss_pred cCCCCCEEEccccCCCHH-HHHHHHhCCCCCCEEEeecCCCcH------HHHHHHHHccccccEEE
Q 007586 458 YSLNVRWMLLGCVGETDE-GLIAFSRGCPNLRKLEMRGCSFSE------YALAAAVMQLTSLRYLW 516 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~i~~------~~~~~l~~~~~~L~~L~ 516 (597)
.+++|+.|+|++|.+++. .+..+. .+ +|+.|++++|++++ .-...+...+|+|+.|+
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 456666666666665443 122111 22 56666666666542 11223334455555554
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.92 E-value=8.2e-05 Score=74.89 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=30.0
Q ss_pred hCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecC
Q 007586 430 MGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGC 495 (597)
Q Consensus 430 ~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 495 (597)
.+|.+|+.+++ ...++.-+-.++. .|.+|+.+.+..+ ++..+-.++ .+|++|+.+++..+
T Consensus 317 ~~c~~L~~i~l---p~~v~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF-~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 317 ESCTSLVSIDL---PYLVEEIGKRSFR-GCTSLSNINFPLS-LRKIGANAF-QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEECC---CTTCCEECTTTTT-TCTTCCEECCCTT-CCEECTTTB-TTCTTCCEEEEEGG
T ss_pred cCCCCCCEEEe---CCcccEEhHHhcc-CCCCCCEEEECcc-ccEehHHHh-hCCCCCCEEEECCC
Confidence 45667777777 3333221111121 5667777766433 322222222 36777777777654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.91 E-value=0.0017 Score=60.53 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=17.9
Q ss_pred HcCCCCCeEecCCCcccccchhHHHHHhhhCCccceeEeecccc
Q 007586 161 RSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDL 204 (597)
Q Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 204 (597)
.++++|++|+|++|.++.... +..+...+++|+.|+|++|.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~--l~~~~~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNEL 208 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG--GTTHHHHSTTCCEEECTTSCC
T ss_pred hhCCCCCEEECCCCCCCCCcc--chhHHhhCCCCCEEECCCCcc
Confidence 344555555555554443211 111222344555555555443
No 159
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.87 E-value=0.00022 Score=72.78 Aligned_cols=40 Identities=28% Similarity=0.657 Sum_probs=34.4
Q ss_pred ccCCCCCChHH----HHHHhcccCCChhhhhHHHHhhHHHHHhhcccc
Q 007586 9 KMNSGMPDIDT----VFECVIPYVEDPKDRDAISLVCRRWYELDATTR 52 (597)
Q Consensus 9 ~~~~~LP~~~e----il~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~ 52 (597)
.+.. ||+ | |+.+||+|| +.+|++++++|||+|++++....
T Consensus 10 ~~~~-lp~--e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~~~ 53 (435)
T 1p22_A 10 FITA-LPA--RGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTSDGM 53 (435)
T ss_dssp HHHH-TGG--GTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHHHTT
T ss_pred hHHH-CCc--chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcChH
Confidence 3444 999 9 999999999 99999999999999999874433
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.76 E-value=1.5e-05 Score=80.43 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=50.5
Q ss_pred HhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC--CcHHHHHHHH
Q 007586 429 LMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS--FSEYALAAAV 506 (597)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~--i~~~~~~~l~ 506 (597)
+..|.+|+.+.+ ...++.-+-.++ ..|.+|+.+.+..+ ++..+-.++ .+|.+|+.+.+..+- |.+. ++
T Consensus 293 F~~~~~L~~i~l---~~~i~~I~~~aF-~~c~~L~~i~lp~~-v~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~---aF- 362 (394)
T 4fs7_A 293 FYGCSSLTEVKL---LDSVKFIGEEAF-ESCTSLVSIDLPYL-VEEIGKRSF-RGCTSLSNINFPLSLRKIGAN---AF- 362 (394)
T ss_dssp TTTCTTCCEEEE---CTTCCEECTTTT-TTCTTCCEECCCTT-CCEECTTTT-TTCTTCCEECCCTTCCEECTT---TB-
T ss_pred cccccccccccc---ccccceechhhh-cCCCCCCEEEeCCc-ccEEhHHhc-cCCCCCCEEEECccccEehHH---Hh-
Confidence 346788999988 443332211222 26889999998532 433322233 388999999997663 3333 22
Q ss_pred HccccccEEEeecc
Q 007586 507 MQLTSLRYLWVQGY 520 (597)
Q Consensus 507 ~~~~~L~~L~l~~~ 520 (597)
..|++|+.+.+..+
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 34899999998765
No 161
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.67 E-value=0.00058 Score=70.11 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=32.5
Q ss_pred CCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcc
Q 007586 13 GMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDAT 50 (597)
Q Consensus 13 ~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~ 50 (597)
.||+ ||+.+||+|| +.+|++++++|||+|++++..
T Consensus 17 ~lp~--~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 17 SLPF--EISLKIFNYL-QFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HSCH--HHHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred HCCH--HHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence 3999 9999999999 999999999999999998744
No 162
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.57 E-value=0.00053 Score=70.08 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=33.0
Q ss_pred CCCCChHHHHHHhcccCCChhhhhHHHHhhHHHHHhhcc
Q 007586 12 SGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDAT 50 (597)
Q Consensus 12 ~~LP~~~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~ 50 (597)
..||+ |++.+||+|| +.+|++++++|||+|+.++..
T Consensus 20 ~~lp~--e~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 20 SLLPK--ELALYVLSFL-EPKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp TSSCH--HHHHHHHTTS-CHHHHHHHTTSCHHHHHHHTC
T ss_pred HHCCH--HHHHHHHHhC-CHHHHHHHHHHhHHHHhhcCc
Confidence 44999 9999999999 999999999999999998743
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.23 E-value=0.00027 Score=69.73 Aligned_cols=63 Identities=19% Similarity=0.073 Sum_probs=33.3
Q ss_pred cCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC
Q 007586 458 YSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS 523 (597)
Q Consensus 458 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 523 (597)
.+++|+.|+|++|.++......+ .++++|+.|+|++|.|+..... +.. ..+|+.|++.+|+++
T Consensus 54 ~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~-~~~-~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 54 GLGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLNLSFNALESLSWK-TVQ-GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCSEEECCSSCCCEECTTGG-GSCSCCCEEECCSSCCSCCCST-TTC-SCCCCEEECCSSCCC
T ss_pred cccCCCEEECCCCccceeCHHHh-cCCcCCCEEeCCCCccceeCHH-Hcc-cCCceEEEeeCCCcc
Confidence 56666666666666654332222 2566677777777665422111 111 122667777666643
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.82 E-value=0.0049 Score=60.50 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=31.9
Q ss_pred cCCCCCeEecCC-CcccccchhHHHHHhhhCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecCCC
Q 007586 162 SCRQLRTLFLEE-SSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKINDCE 231 (597)
Q Consensus 162 ~~~~L~~L~L~~-~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~ 231 (597)
.+++|++|+|++ |.+....... ...+++|+.|+|++|.+..+....+ .++++|+.|+|++|.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~----~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAF----HFTPRLSRLNLSFNA 91 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGG----GSCSCCCEEECCSSC
T ss_pred CCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHh----cCCcCCCEEeCCCCc
Confidence 345666666664 6554433211 2234456666666555443333222 345666666666655
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.52 E-value=0.0004 Score=69.79 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=41.3
Q ss_pred HhCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCCCcHHHHHHHHHc
Q 007586 429 LMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQ 508 (597)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 508 (597)
+.+|.+|+.+.| ...++.-+-.++. .|.+|+.+.+..+ ++..+-.++ .+|++|+.+++.++.... .++ ..
T Consensus 307 F~~c~~L~~i~l---p~~v~~I~~~aF~-~C~~L~~i~ip~s-v~~I~~~aF-~~C~~L~~i~~~~~~~~~---~~~-~~ 376 (394)
T 4gt6_A 307 FAGCISLKSIDI---PEGITQILDDAFA-GCEQLERIAIPSS-VTKIPESAF-SNCTALNNIEYSGSRSQW---NAI-ST 376 (394)
T ss_dssp TTTCTTCCEEEC---CTTCCEECTTTTT-TCTTCCEEEECTT-CCBCCGGGG-TTCTTCCEEEESSCHHHH---HTC-BC
T ss_pred ecCCCCcCEEEe---CCcccEehHhHhh-CCCCCCEEEECcc-cCEEhHhHh-hCCCCCCEEEECCceeeh---hhh-hc
Confidence 356778888888 4433322112222 6788888888432 322222223 378888888888765221 112 34
Q ss_pred cccccEEEeeccc
Q 007586 509 LTSLRYLWVQGYR 521 (597)
Q Consensus 509 ~~~L~~L~l~~~~ 521 (597)
+.+|+.+.+..+.
T Consensus 377 ~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 377 DSGLQNLPVAPGS 389 (394)
T ss_dssp CCCC---------
T ss_pred cCCCCEEEeCCCC
Confidence 6778877776554
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.41 E-value=0.0022 Score=64.27 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=51.8
Q ss_pred hCCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC--CcHHHHHHHHH
Q 007586 430 MGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS--FSEYALAAAVM 507 (597)
Q Consensus 430 ~~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~--i~~~~~~~l~~ 507 (597)
.+|++|+.+.+ ...++.-+-..+ ..|.+|+.+.+..+ ++..+-.+ ..+|.+|+.+.+..+- |.+.+ + .
T Consensus 285 ~~c~~L~~i~l---~~~i~~I~~~aF-~~c~~L~~i~lp~~-v~~I~~~a-F~~C~~L~~i~ip~sv~~I~~~a---F-~ 354 (394)
T 4gt6_A 285 MNCPALQDIEF---SSRITELPESVF-AGCISLKSIDIPEG-ITQILDDA-FAGCEQLERIAIPSSVTKIPESA---F-S 354 (394)
T ss_dssp TTCTTCCEEEC---CTTCCEECTTTT-TTCTTCCEEECCTT-CCEECTTT-TTTCTTCCEEEECTTCCBCCGGG---G-T
T ss_pred ccccccccccC---CCcccccCceee-cCCCCcCEEEeCCc-ccEehHhH-hhCCCCCCEEEECcccCEEhHhH---h-h
Confidence 46888999988 443332221222 27889999999532 32222222 3389999999997653 44433 2 3
Q ss_pred ccccccEEEeeccc
Q 007586 508 QLTSLRYLWVQGYR 521 (597)
Q Consensus 508 ~~~~L~~L~l~~~~ 521 (597)
+|++|+.+++.++.
T Consensus 355 ~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 355 NCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEESSCH
T ss_pred CCCCCCEEEECCce
Confidence 58999999998875
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.49 E-value=1.8 Score=42.52 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=18.3
Q ss_pred hCCccceeEeecccccccCHHHHHHHHHhCCCCcEEEecC
Q 007586 190 YNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKIND 229 (597)
Q Consensus 190 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~ 229 (597)
.+..|+.+.+...- ..+.... +..|..|+.+.+..
T Consensus 215 ~~~~l~~i~~~~~~-~~i~~~~----f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 215 YGKNLKKITITSGV-TTLGDGA----FYGMKALDEIAIPK 249 (379)
T ss_dssp TCSSCSEEECCTTC-CEECTTT----TTTCSSCCEEEECT
T ss_pred cccccceeeeccce-eEEcccc----ccCCccceEEEcCC
Confidence 45567777664321 1122222 24567777777754
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=68.94 E-value=1.3 Score=35.84 Aligned_cols=35 Identities=14% Similarity=0.014 Sum_probs=16.1
Q ss_pred CCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC
Q 007586 461 NVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS 496 (597)
Q Consensus 461 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 496 (597)
+|+.|+|++|.|+...... ...+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~-f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGL-LDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTT-GGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhh-hhhccccCEEEecCCC
Confidence 4555555555543322221 1244455555555555
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=63.06 E-value=1.2 Score=35.98 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=31.7
Q ss_pred CCCCEEEeecCCCcHHHHHHHHHccccccEEEeeccccC-HHHHHHHH
Q 007586 485 PNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRAS-KDGRDILR 531 (597)
Q Consensus 485 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~-~~~~~~l~ 531 (597)
++|+.|+|++|.|+......+ ..+++|+.|+|++|++. +-.+.++.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~NP~~CdC~l~~l~ 77 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLL-DALPALRTAHLGANPWRCDCRLVPLR 77 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTG-GGCTTCCEEECCSSCCBCSGGGHHHH
T ss_pred cCCCEEECCCCcCCccChhhh-hhccccCEEEecCCCeeccCccHHHH
Confidence 479999999999754332222 34899999999999843 33344443
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=55.39 E-value=1.2 Score=43.86 Aligned_cols=79 Identities=11% Similarity=0.137 Sum_probs=37.3
Q ss_pred CCcCCcEEEeeccCCCCCHHHHHHHHhcCCCCCEEEccccCCCHHHHHHHHhCCCCCCEEEeecCC--CcHHHHHHHHHc
Q 007586 431 GCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCS--FSEYALAAAVMQ 508 (597)
Q Consensus 431 ~~~~L~~L~l~~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~--i~~~~~~~l~~~ 508 (597)
.|.+|+.+.+ ...++.-+-..+ ..|++|+.+.+..+.++..+-.++ .+|.+|+.+.+..+- |.+.+ + .+
T Consensus 261 ~~~~l~~i~l---~~~i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~a---F-~~ 331 (379)
T 4h09_A 261 NCTALKTLNF---YAKVKTVPYLLC-SGCSNLTKVVMDNSAIETLEPRVF-MDCVKLSSVTLPTALKTIQVYA---F-KN 331 (379)
T ss_dssp TCTTCCEEEE---CCCCSEECTTTT-TTCTTCCEEEECCTTCCEECTTTT-TTCTTCCEEECCTTCCEECTTT---T-TT
T ss_pred eeehhccccc---cccceecccccc-ccccccccccccccccceehhhhh-cCCCCCCEEEcCccccEEHHHH---h-hC
Confidence 4556666666 333222111111 156666666665444432222222 266777777775432 33222 2 23
Q ss_pred cccccEEEee
Q 007586 509 LTSLRYLWVQ 518 (597)
Q Consensus 509 ~~~L~~L~l~ 518 (597)
|++|+.+.+.
T Consensus 332 C~~L~~i~ip 341 (379)
T 4h09_A 332 CKALSTISYP 341 (379)
T ss_dssp CTTCCCCCCC
T ss_pred CCCCCEEEEC
Confidence 6666666553
Done!