BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007588
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 393 RYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEA 452
R+ S + R L + +KVL D DV+V+ L LW+ D+ +GA
Sbjct: 77 RHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGAC-------- 128
Query: 453 SFRRMDLFINFSDPLIAKKFDVKACTWAF--GMNLFDLQEWRKRKL 496
+DLF+ + +K + + F G+ L +L++WR+ +
Sbjct: 129 ----IDLFVERQEGY-KQKIGMADGEYYFNAGVLLINLKKWRRHDI 169
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 393 RYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEA 452
R+ S + R L + +KVL D DV+V+ L LW+ D+ +GA
Sbjct: 77 RHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA--------- 127
Query: 453 SFRRMDLFINFSDPLIAKKFDVKACTWAF--GMNLFDLQEWRKRKL 496
+DLF+ + +K + F G+ L +L++WR+ +
Sbjct: 128 ---SIDLFVERQEGY-KQKIGXADGEYYFNAGVLLINLKKWRRHDI 169
>pdb|1OZP|A Chain A, Crystal Structure Of Rv0819 From Mycobacterium
Tuberculosis Mshd- Mycothiol Synthase Acetyl-Coenzyme A
Complex.
pdb|1P0H|A Chain A, Crystal Structure Of Rv0819 From Mycobacterium
Tuberculosis Mshd- Mycothiol Synthase Coenzyme A Complex
Length = 318
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 173 AYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKA 228
YLN +PP + EL + + R +G A + L++ A R TLD A
Sbjct: 66 GYLNLSPPRGAGGAMAELVVHPQSRRRGIGTAMARAALAKTAGRNQFWAHGTLDPA 121
>pdb|2C27|A Chain A, The Structure Of Mycothiol Synthase In Complex With Des-
Acetylmycothiol And Coenzymea
Length = 315
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 173 AYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKA 228
YLN +PP + EL + + R +G A + L++ A R TLD A
Sbjct: 63 GYLNLSPPRGAGGAMAELVVHPQSRRRGIGTAMARAALAKTAGRNQFWAHGTLDPA 118
>pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna
Polymerase B1 From The Archaeon Sulfolobus Solfataricus
Length = 847
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 15/69 (21%)
Query: 323 VVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDN-FNWLSTKYN 381
V+ STV A+E V + TDSL FLLNPP S++N W+ T +N
Sbjct: 601 VITSTVKKAREEGLTVLYGDTDSL--------FLLNPPK------NSLENIIKWVKTTFN 646
Query: 382 ATLKKENSH 390
L+ + ++
Sbjct: 647 LDLEVDKTY 655
>pdb|2Y9Y|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 374
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 355 FLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVF----- 409
LLNP + + SIDN+ Y L S P +H R P VF
Sbjct: 1 MLLNPTKRERKENYSIDNY------YKDVLNTGRSSTP------SHPRMPKPHVFHSHQL 48
Query: 410 -PALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLI 468
P +VL + G + +D G + +E + + L +N S PL
Sbjct: 49 QPPQLQVLYEKERMWTAKKTGYVPTMDDVKAAYGKISDQEEQKEKLELLKLSVNNSQPLT 108
Query: 469 AKKFDVKACTWAFGMNLFDLQEWRK 493
++ +KA + G ++ E+RK
Sbjct: 109 EEEEKMKADWESEGFTNWNKLEFRK 133
>pdb|2FYH|A Chain A, Solution Structure Of The 2'-5' Rna Ligase-Like Protein
From Pyrococcus Furiosus
Length = 190
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 113 TDEGKEENKKMKQKTASSGSRGKDQTNQAGARRSPNVQASLLRV------SDEKIKEMKD 166
T+E EE KK+ +K A + + G +PN +RV +DE IK++
Sbjct: 50 TEEQAEEIKKILEKIAKKYKKHEVNVRGIGVFPNPN----YVRVIWAGVENDEIIKKIAK 105
Query: 167 QVIRAQAYLNFAPPGSNSHLVKELKL-RIKEVERAVGAATKDSDLSRRAF 215
++ A L F G + V + L R+K V+ +G A K +L+ F
Sbjct: 106 EIDDELAKLGFKKEG---NFVAHITLGRVKFVKDKLGLAMKLKELANEDF 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,502,378
Number of Sequences: 62578
Number of extensions: 713550
Number of successful extensions: 1623
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 14
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)