Query 007588
Match_columns 597
No_of_seqs 301 out of 1443
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 9E-47 3.1E-51 386.3 17.2 258 307-590 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 2.7E-42 9.1E-47 357.7 17.5 252 308-584 1-269 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 1.5E-26 5.2E-31 242.7 15.8 226 306-584 3-254 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 9.1E-25 3.1E-29 222.5 13.9 208 310-570 8-224 (263)
5 1o7q_A N-acetyllactosaminide a 79.2 23 0.00079 36.1 13.0 201 308-540 50-262 (289)
6 3ioh_A Histo-blood group ABO s 72.2 64 0.0022 33.0 14.1 200 308-539 60-270 (298)
7 3v1a_A Computational design, M 61.9 8.9 0.0003 29.0 4.0 36 164-199 6-41 (48)
8 1fo8_A Alpha-1,3-mannosyl-glyc 56.0 64 0.0022 33.4 10.9 113 308-433 4-121 (343)
9 1yzm_A FYVE-finger-containing 50.8 13 0.00044 28.5 3.3 36 164-199 7-42 (51)
10 1z0k_B FYVE-finger-containing 47.5 14 0.00049 29.9 3.3 37 164-200 25-61 (69)
11 1z0j_B FYVE-finger-containing 46.5 16 0.00053 28.8 3.2 38 163-200 13-50 (59)
12 4ayl_A BOGT-metal-independent 45.4 2.4E+02 0.0083 28.0 14.8 187 320-539 17-215 (246)
13 2dl1_A Spartin; SPG20, MIT, st 33.1 80 0.0027 28.0 6.1 49 159-207 10-62 (116)
14 4e61_A Protein BIM1; EB1-like 28.3 1.8E+02 0.0061 25.4 7.4 38 214-251 44-101 (106)
15 1xhb_A Polypeptide N-acetylgal 25.0 3.2E+02 0.011 28.4 10.4 102 306-433 29-137 (472)
16 4hg6_A Cellulose synthase subu 23.2 4.2E+02 0.014 30.2 11.6 45 306-350 140-186 (802)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=9e-47 Score=386.26 Aligned_cols=258 Identities=13% Similarity=0.138 Sum_probs=192.8
Q ss_pred ceeEEEEeCcch--hHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCcccchhhhhhh
Q 007588 307 LHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 384 (597)
Q Consensus 307 ~ihIv~~sDn~l--aasVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~~~~vl 384 (597)
.||||+++|+.+ +++|+|+|++.|+++ +.++|||++++++.+.++.+..+....+++|+++.+++ .++.
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~------- 75 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFS------- 75 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHh-------
Confidence 499999999865 599999999999985 57999999999999887776665445678999998874 1111
Q ss_pred hccCCCCCCCcchhhHHHhhhcccccC-CCeEEEEecCeeeccCcHHhhccCCCCCEEEEecccccchhhhhhhhcccCC
Q 007588 385 KKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 463 (597)
Q Consensus 385 k~l~s~~~~~~S~~~y~Rf~IPeLLPe-ldKVLYLD~DvVVq~DLseLw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnf 463 (597)
.. ....++|..+|+||++|++||+ ++||||||+|+||++||++||++|++|+++|||+||.... +.+....+
T Consensus 76 -~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~--~~~~~~~~-- 148 (276)
T 3tzt_A 76 -FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD--MANNVNRI-- 148 (276)
T ss_dssp -----------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC-----------------
T ss_pred -cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccch--HHHHHHHh--
Confidence 11 1235789999999999999995 9999999999999999999999999999999999997531 11111112
Q ss_pred CChhhhhccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHHcCCCCCCCCCCcchhhhhhccceeEecc-cccccccC
Q 007588 464 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDK-RWHVLGLG 542 (597)
Q Consensus 464 s~P~i~~~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~d~~~LpilNi~F~g~i~~Ld~-~WN~~~lg 542 (597)
.++...+|||||||||||++||+.++++++++|++++.....+ +||+++|.+|.|++++||+ +||+++ |
T Consensus 149 -------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~--~DQd~LN~~f~~~~~~Lp~~~wN~~~-~ 218 (276)
T 3tzt_A 149 -------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLL--PDQDILNAMYGDRIYPLDDLIYNYDA-R 218 (276)
T ss_dssp --------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEEEEHHHHSEET-T
T ss_pred -------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccC--CChhHHHHHHhCCEEECCchheeeec-c
Confidence 2334469999999999999999999999999999987644333 4455679999999999999 999996 3
Q ss_pred CCCC--------Cc-ccccCCCEEEEecCCCCCcccCCccccHHHHHHHhccCCccc
Q 007588 543 YDSG--------VA-RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFL 590 (597)
Q Consensus 543 y~~~--------i~-~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~~~~pfl 590 (597)
+... .. ....++|+||||+|+.|||+..+.++|+++||+|++...+||
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 219 NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 2110 01 124568999999999999999999999999999999887775
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=2.7e-42 Score=357.71 Aligned_cols=252 Identities=18% Similarity=0.216 Sum_probs=197.7
Q ss_pred eeEEEEeCcch--hHHHHHHHH-HhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCcccchhhhhhh
Q 007588 308 HHYAVFSDNVL--ACAVVVNST-VSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL 384 (597)
Q Consensus 308 ihIv~~sDn~l--aasVvI~Sl-v~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~~~~vl 384 (597)
||||+++|+.+ +++|+++|+ +.|+. ..++|||++++++.+..+.+..+....+..|+++.++.- . +
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-----~----~ 69 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-----D----F 69 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-----G----G
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-----H----H
Confidence 69999999864 599999999 88874 469999999999998887776665545778888887641 1 1
Q ss_pred hccCCCCCCCcchhhHHHhhhcccccCCCeEEEEecCeeeccCcHHhhccCCCCCEEEEecccccchhhhhhhhcccCCC
Q 007588 385 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFS 464 (597)
Q Consensus 385 k~l~s~~~~~~S~~~y~Rf~IPeLLPeldKVLYLD~DvVVq~DLseLw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnfs 464 (597)
+... ....++|..+|+||++|++||+++||||||+|+||++||++||++||+|+++|||+||.... ...+...++
T Consensus 70 ~~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~--~~~~~~~~~-- 144 (311)
T 1g9r_A 70 AGFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER--QEGYKQKIG-- 144 (311)
T ss_dssp TTSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT--STTHHHHTT--
T ss_pred hcCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhh--hHHHHHhcC--
Confidence 1111 12467899999999999999999999999999999999999999999999999999986420 112222333
Q ss_pred ChhhhhccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHHcCCCCCCCCCCcchhhhhhccceeEecccccccccCCC
Q 007588 465 DPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYD 544 (597)
Q Consensus 465 ~P~i~~~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~d~~~LpilNi~F~g~i~~Ld~~WN~~~lgy~ 544 (597)
+.+..+||||||||||+++||+.++++++++|++++.....+. ||+++|.+|.|+++.||.+||++..++.
T Consensus 145 -------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~--DQd~lN~~f~~~~~~Lp~~wN~~~~~~~ 215 (311)
T 1g9r_A 145 -------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQ--DQDILNGLFKGGVCYANSRFNFMPTNYA 215 (311)
T ss_dssp -------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSH--HHHHHHHHHTTSEEEECGGGSBCHHHHH
T ss_pred -------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccC--CcCHHHHHHcCCEEEcChhhccCcchhh
Confidence 2345789999999999999999999999999999876544443 4445799999999999999999853211
Q ss_pred C------CC---c-----ccccCCCEEEEecCCCCCcccCCccccHHHHHHHhc
Q 007588 545 S------GV---A-----RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFIN 584 (597)
Q Consensus 545 ~------~i---~-----~~~i~~~~IIHY~G~~KPW~~~~~~~y~~lW~kYl~ 584 (597)
. +. . ....++++||||+|+.|||...+.+++.++|..+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~~ 269 (311)
T 1g9r_A 216 FMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269 (311)
T ss_dssp TCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHHH
T ss_pred HHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHHH
Confidence 0 00 0 112357899999999999999988888877766663
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.94 E-value=1.5e-26 Score=242.73 Aligned_cols=226 Identities=12% Similarity=0.154 Sum_probs=157.1
Q ss_pred CceeEEEEeCcch--hHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCcccchhhhhh
Q 007588 306 DLHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNAT 383 (597)
Q Consensus 306 ~~ihIv~~sDn~l--aasVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~~~~v 383 (597)
+...|++++|+.| ++.|++.|+..|++. ..++| +++++++.+..+.+.... . .++.++......+. -
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~~l~~~~~~---~ 71 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----D--EVITVDILDSGDSA---H 71 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----S--EEEECCTTSTTSTT---H
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEeecCCcchh---h
Confidence 3578888888754 588999999999864 34555 667789988777766542 2 24444422110000 0
Q ss_pred hhccCCCCCCCcchhhHHHhhhcccccCCCeEEEEecCeeeccCcHHhhccCCCCCEEEEecccccchhhhhhhhcccCC
Q 007588 384 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 463 (597)
Q Consensus 384 lk~l~s~~~~~~S~~~y~Rf~IPeLLPeldKVLYLD~DvVVq~DLseLw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnf 463 (597)
+..+ . ......+|+||++|++ ++++||||||+|+||.+||++||+++ .+|||+|.+ +
T Consensus 72 ~~~~--~--~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~--------------~ 128 (333)
T 1ll2_A 72 LTLM--K--RPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPG--------------W 128 (333)
T ss_dssp HHHH--H--CGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSS--------------S
T ss_pred cccc--c--ccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeEEecCC--------------C
Confidence 0000 0 1124689999999995 88999999999999999999999986 478887642 1
Q ss_pred CChhhhhccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHHcCCCCCCCCCCcchhhhhhccce-----eEecccccc
Q 007588 464 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHT-----MALDKRWHV 538 (597)
Q Consensus 464 s~P~i~~~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~d~~~LpilNi~F~g~i-----~~Ld~~WN~ 538 (597)
.+||||||||||++. ++.+++++++.++.. +..+||+++|.+|.+.. ..||.+||+
T Consensus 129 ------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~~---~~~~DQ~~LN~~f~~~~~~~~~~~Lp~~yN~ 189 (333)
T 1ll2_A 129 ------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQGS---FDGGDQGLLNTFFNSWATTDIRKHLPFIYNL 189 (333)
T ss_dssp ------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTCC---TTSSHHHHHHHHTTTTTTSCGGGBCCGGGSE
T ss_pred ------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcCC---CCCCCHHHHHHHHHhhcccCccccCCcHHhc
Confidence 259999999998863 445667777776532 34467778899998644 799999999
Q ss_pred cccC-CCCCCc-ccccCCCEEEEecCCCCCcccCCcc-----------------ccHHHHHHHhc
Q 007588 539 LGLG-YDSGVA-RRDIEQAAVIHYDGVMKPWLEIGIA-----------------KYKGYWTKFIN 584 (597)
Q Consensus 539 ~~lg-y~~~i~-~~~i~~~~IIHY~G~~KPW~~~~~~-----------------~y~~lW~kYl~ 584 (597)
+... |..... ....++++||||+|..|||...+.+ .+...||.+++
T Consensus 190 ~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~ 254 (333)
T 1ll2_A 190 SSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT 254 (333)
T ss_dssp ETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHH
T ss_pred ccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHHHHH
Confidence 8532 221000 1235689999999999999886432 45678998876
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.92 E-value=9.1e-25 Score=222.53 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=144.4
Q ss_pred EEEEeCcch--hHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCcccchhhhhhhhcc
Q 007588 310 YAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 387 (597)
Q Consensus 310 Iv~~sDn~l--aasVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~~~~vlk~l 387 (597)
+.+++|+.| ++.|++.|+..+++. ..+++ +++++++.+..+.+.... . +++.++.....++ . -++.+
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~~----~--~vi~V~~l~~~~~-~--~~~~~ 76 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETVF----D--EVIMVDVLDSGDS-A--HLTLM 76 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHS----S--EEEECCCCCCCCH-H--HHHHT
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHcC----C--eEEEeeecCCcch-h--hhhhh
Confidence 445667644 588999999998764 23433 557889988777665432 2 3444443221110 0 01111
Q ss_pred CCCCCCCcchhhHHHhhhcccccCCCeEEEEecCeeeccCcHHhhccCCCCCEEEEecccccchhhhhhhhcccCCCChh
Q 007588 388 NSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPL 467 (597)
Q Consensus 388 ~s~~~~~~S~~~y~Rf~IPeLLPeldKVLYLD~DvVVq~DLseLw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnfs~P~ 467 (597)
.++. + ..+|.|++++++. +++||||||+|++|.+||++||+++ .+|||.|.+.
T Consensus 77 --~rp~-~-~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~------------------ 129 (263)
T 3u2u_A 77 --KRPE-L-GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW------------------ 129 (263)
T ss_dssp --TCTT-G-GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS------------------
T ss_pred --cCcc-h-hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEeccCCC------------------
Confidence 1222 2 4689999999976 5899999999999999999999997 4788876421
Q ss_pred hhhccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHHcCCCCCCCCCCcchhhhhhcc-----ceeEeccccccccc-
Q 007588 468 IAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYK-----HTMALDKRWHVLGL- 541 (597)
Q Consensus 468 i~~~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~~~~~~l~d~~~LpilNi~F~g-----~i~~Ld~~WN~~~l- 541 (597)
..||||||||||++. ++.+++++++.++.. ++.+||.++|.+|.+ .++.||.+||++..
T Consensus 130 --------~~~fNsGv~li~p~~----~~~~~l~~~~~~~~~---~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~ 194 (263)
T 3u2u_A 130 --------PDCFNSGVFVYQPSV----ETYNQLLHLASEQGS---FDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSIS 194 (263)
T ss_dssp --------TTSEEEEEEEECCCH----HHHHHHHHHHHHHCC---TTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHH
T ss_pred --------CccccCeEEEEcccH----HHHHHHHHHHHhcCC---CCcccHHHHHHHhccccccCeeEeCCcccccccch
Confidence 258999999999864 667778888877543 344566678999988 88999999999843
Q ss_pred CCCCCCc-ccccCCCEEEEecCCCCCcccC
Q 007588 542 GYDSGVA-RRDIEQAAVIHYDGVMKPWLEI 570 (597)
Q Consensus 542 gy~~~i~-~~~i~~~~IIHY~G~~KPW~~~ 570 (597)
.|..... ....++++||||+|+.|||...
T Consensus 195 ~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 195 IYSYLPAFKVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp HHSSHHHHHHHGGGCSEEECCSSSCGGGSE
T ss_pred hccccHHHHhhcCCeEEEEECCCCcCCCCC
Confidence 2321100 1235689999999999999985
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=79.19 E-value=23 Score=36.13 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=112.3
Q ss_pred eeEEEEeCc-ch-h-HHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCc-ccchhhhhh
Q 007588 308 HHYAVFSDN-VL-A-CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFN-WLSTKYNAT 383 (597)
Q Consensus 308 ihIv~~sDn-~l-a-asVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~-~l~~~~~~v 383 (597)
|-+.+++=. +. . .---+.|.=++=-..-++++||+||+.+.-. .+.-..+.++.+..+.... |-+- .
T Consensus 50 IGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p-----~v~l~~~r~~~V~~i~~~~~W~d~----s 120 (289)
T 1o7q_A 50 VGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMP-----LIELGPLRSFKVFKIKPEKRWQDI----S 120 (289)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCC-----CCCCCTTEEEEEEECCCCSSHHHH----H
T ss_pred EEEEEEEecccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhhCC-----ccccCCCCeEEEEEeccccCCchh----H
Confidence 444444443 33 2 4556677766655556799999999753200 0111234557777765422 2110 0
Q ss_pred hhccCCCCCCCcchhhHHHhhhcccccCCCeEEEEecCeeeccCcHHhhccCCCCCEEEEecccccchhhhhhhhcccCC
Q 007588 384 LKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF 463 (597)
Q Consensus 384 lk~l~s~~~~~~S~~~y~Rf~IPeLLPeldKVLYLD~DvVVq~DLseLw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnf 463 (597)
+ .-+.++.++-.-+++-++|-+.++|+|+++++++..= .| |..+|...--.- .+-+..+-+
T Consensus 121 m----------~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y-----~~~~~~fpY 181 (289)
T 1o7q_A 121 M----------MRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWY-----KADPNDFTY 181 (289)
T ss_dssp H----------HHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTT-----TSCGGGSCC
T ss_pred H----------HHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHh-----CCCCCCCCC
Confidence 1 0122333333456677899999999999999988542 12 556666542211 100000100
Q ss_pred -CChhhhh--ccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHH---cCCCCCCCCCCcchhhhhh--ccceeEeccc
Q 007588 464 -SDPLIAK--KFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTF--YKHTMALDKR 535 (597)
Q Consensus 464 -s~P~i~~--~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~---~~~~~l~d~~~LpilNi~F--~g~i~~Ld~~ 535 (597)
.+|.=.. .++.+..|+.+|++==-..+.- ++++.|++-+.. +.-...|.+.. -+|-.| +..++.|++.
T Consensus 182 ERrp~S~AyIp~~eGdfYY~Ga~fGGt~~~vl--~l~~~c~~~i~~D~~n~I~A~wHDES--HLNKYf~~~KPtKvLSPE 257 (289)
T 1o7q_A 182 ERRKESAAYIPFGEGDFYYHAAIFGGTPTQVL--NITQECFKGILKDKKNDIEAQWHDES--HLNKYFLLNKPTKILSPE 257 (289)
T ss_dssp CCCTTSTTCCCTTCCSCCEEEEEEEECHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHHH--HHHHHHHHSCCSEEECGG
T ss_pred CCCcCceeeecCCCCCEEEEceeeCCcHHHHH--HHHHHHHHHHHHHHhCCeEEEecchh--hhhHHHhhcCCCEEECHH
Confidence 0111011 2566889999999866666554 467777765554 44446786554 357664 3457899999
Q ss_pred ccccc
Q 007588 536 WHVLG 540 (597)
Q Consensus 536 WN~~~ 540 (597)
|+...
T Consensus 258 Y~wd~ 262 (289)
T 1o7q_A 258 YCWDY 262 (289)
T ss_dssp GSBCG
T ss_pred HCCCc
Confidence 88763
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=72.25 E-value=64 Score=33.03 Aligned_cols=200 Identities=12% Similarity=0.144 Sum_probs=107.7
Q ss_pred eeEEEEeCc-chh-HHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCC-cccchhhhhhh
Q 007588 308 HHYAVFSDN-VLA-CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNF-NWLSTKYNATL 384 (597)
Q Consensus 308 ihIv~~sDn-~la-asVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f-~~l~~~~~~vl 384 (597)
|-+++++=. +.. .---+.|.=++=-...++.+||+||+.+. + -.+....+-++.++.+... .|-+-+ +
T Consensus 60 IGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~--v---P~v~l~~~r~~~V~~v~~~~~Wqd~s----m 130 (298)
T 3ioh_A 60 IGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAA--V---PRVTLGTGRQLSVLEVRAYKRWQDVS----M 130 (298)
T ss_dssp EEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGG--S---CCCCCCTTEEEEEEECCCCSSHHHHH----H
T ss_pred EEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhh--C---CccccCCCCeEEEEEeccccCCcccc----H
Confidence 444444444 332 55677777777666668999999997532 0 0111234566777766532 232100 0
Q ss_pred hccCCCCCCCcchhhHHHhhhcccccCCCeEEEEecCeeeccCcHHhhccCCCCCEEEEecccccchhhhhhhhcccCC-
Q 007588 385 KKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF- 463 (597)
Q Consensus 385 k~l~s~~~~~~S~~~y~Rf~IPeLLPeldKVLYLD~DvVVq~DLseLw~iDL~GkviAAV~D~~~~~~~~~r~~~~Lnf- 463 (597)
. -+..+..+-.-.++-++|-++++|+|+++++++.. +.=|..+|...--. ++.-+..+-+
T Consensus 131 ~----------Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~vG~----E~Lg~lva~lHp~~-----y~~~~~~FpYE 191 (298)
T 3ioh_A 131 R----------RMEMISDFCERRFLSEVDYLVCVDVDMEFRDHVGV----EILTPLFGTLHPGF-----YGSSREAFTYE 191 (298)
T ss_dssp H----------HHHHHHHHHHHTHHHHCSEEEEEESSEEECSCBCG----GGCSSEEEEBCTTT-----TTSCGGGSCCC
T ss_pred H----------HHHHHHHHHHHHHhhcCCEEEEecCCCeeccCccH----HHhHhhHhhcChhh-----hcCCcccCccc
Confidence 0 11222233334467789999999999999998653 11134455542111 1111111111
Q ss_pred CChhhhh--ccCCCCCceecceEEeecHHHHHhhHHHHHHHHHHH---cCCCCCCCCCCcchhhhhhc--cceeEecccc
Q 007588 464 SDPLIAK--KFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTFY--KHTMALDKRW 536 (597)
Q Consensus 464 s~P~i~~--~fd~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~---~~~~~l~d~~~LpilNi~F~--g~i~~Ld~~W 536 (597)
.+|.=.. .++.+..|+.+|++==-..+.. ++++.|++-+.. +.-...|.+.. -+|-.|- .-++.|++.|
T Consensus 192 Rrp~S~AyIp~~eGdfYY~ga~fGGt~~~vl--~Lt~~C~~~i~~D~~n~IeA~WhDES--HLNKYfl~hKPtKvLSPEY 267 (298)
T 3ioh_A 192 RRPQSQAYIPKDEGDFYYGGAFFGGSVQEVQ--RLTRACHQAMMVDQANGIEAVWHDES--HLNKYLLRHKPTKVLSPEY 267 (298)
T ss_dssp CCTTSTTCCCTTCCSCCBCTTEEEEEHHHHH--HHHHHHHHHHHHHHHTTCCCTTTHHH--HHHHHHHHSCCSEEECGGG
T ss_pred CCccccccccCCCCCeEEeeeecCCcHHHHH--HHHHHHHHHHHHHHhCCceEeccchh--hhhhhhhhcCCCceeCHHH
Confidence 0111011 1456778888887754444433 356666655544 44456787655 3576654 4479999998
Q ss_pred ccc
Q 007588 537 HVL 539 (597)
Q Consensus 537 N~~ 539 (597)
++-
T Consensus 268 ~Wd 270 (298)
T 3ioh_A 268 LWD 270 (298)
T ss_dssp SBC
T ss_pred cCC
Confidence 865
No 7
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=61.85 E-value=8.9 Score=28.99 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHH
Q 007588 164 MKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVER 199 (597)
Q Consensus 164 ~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~ 199 (597)
|+.|+++.+.|+.-|+..+.-.=+.=|.+|++|+++
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~ 41 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMH 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 789999999999889999998888899999999876
No 8
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=56.02 E-value=64 Score=33.44 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=61.3
Q ss_pred eeEEEEeCcchhHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCcccchhhhhhhhcc
Q 007588 308 HHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKE 387 (597)
Q Consensus 308 ihIv~~sDn~laasVvI~Slv~Na~~p~~i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~~~~vlk~l 387 (597)
++|++.+=|.-.+.-++.|+.+........-+.|..|+-..+..+... .+. ..|..+--.+..... +
T Consensus 4 ~pViI~~yNRp~l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~---~~~-~~I~~~~~~d~~~~~--~------- 70 (343)
T 1fo8_A 4 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIA---SYG-SAVTHIRQPDLSNIA--V------- 70 (343)
T ss_dssp CCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHH---TTG-GGSEEEECSCCCCCC--C-------
T ss_pred ccEEEEECCcHHHHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHH---HcC-CceEEEEcCCccccc--c-------
Confidence 345555444334888999999987432334455555665544433222 221 122222111111000 0
Q ss_pred CCCCC---CCcchhhHHHhhhccccc--CCCeEEEEecCeeeccCcHHhhc
Q 007588 388 NSHDP---RYTSALNHLRFYLPDVFP--ALNKVLLFDHDVVVQSDLGRLWN 433 (597)
Q Consensus 388 ~s~~~---~~~S~~~y~Rf~IPeLLP--eldKVLYLD~DvVVq~DLseLw~ 433 (597)
...+. .|..++.+++--+-.+|. ..++||+||+|+++--|.=+.++
T Consensus 71 ~~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 71 QPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp CTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred chhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 00111 133455677777777777 58999999999999998765444
No 9
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=50.75 E-value=13 Score=28.48 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHH
Q 007588 164 MKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVER 199 (597)
Q Consensus 164 ~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~ 199 (597)
|..|+++.++|..-|+..+.-.=+.=|..|++|+++
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ 42 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQD 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999889999998888889999999866
No 10
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=47.46 E-value=14 Score=29.90 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHh
Q 007588 164 MKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERA 200 (597)
Q Consensus 164 ~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~ 200 (597)
|.+|+++.+.|..-|+..+.-.=+.=|..|++|+++-
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 7899999999998899999988888899999998763
No 11
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=46.46 E-value=16 Score=28.82 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=33.5
Q ss_pred HhhHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHh
Q 007588 163 EMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERA 200 (597)
Q Consensus 163 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~ 200 (597)
-|..|+++.++|..-|+..+...=+.=|..|++|++.-
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~e 50 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHT 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 47899999999998899999988888899999998763
No 12
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=45.36 E-value=2.4e+02 Score=28.02 Aligned_cols=187 Identities=17% Similarity=0.193 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhcCCCCc--EEEEEEeCCCCHHHHHHHHhhCCCCCceEEEEEccCCcccchhhhhhhhccCCCCCCCcch
Q 007588 320 CAVVVNSTVSFAKEPEK--IVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSA 397 (597)
Q Consensus 320 asVvI~Slv~Na~~p~~--i~FHIvtd~is~e~~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~~~~vlk~l~s~~~~~~S~ 397 (597)
.---+.|.=++=-...+ +.+||+||....-. ..+... +.++.-+.-.|-+.+ +. -+
T Consensus 17 l~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~vp------~~~~~~--v~~~~~~~~~Wqd~s----m~----------Rm 74 (246)
T 4ayl_A 17 WKDFYLSAERYFMQDQSFIIEYYVFTDSPKLYD------EENNKH--IHRIKQKNLGWPDNT----LK----------RF 74 (246)
T ss_dssp HHHHHHHHHHHBSCSTTSEEEEEEEESCSCCTT------TTTCTT--EEEEECCCCCTTHHH----HT----------HH
T ss_pred HHHHHHhHHHhccCCCccceEEEEEeCChhhCC------cCCCce--EEEEeCCcCCCcccc----hH----------HH
Confidence 55667777777766678 99999999764210 011222 333322333353311 11 12
Q ss_pred hhHHHhhhcccccCCCeEEEEecCeeeccCcHHhhccCCC-CCEEEEecccccc--hh--hhhhhhcccCCCChhhhhcc
Q 007588 398 LNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMK-GKVIGAVDTCKES--EA--SFRRMDLFINFSDPLIAKKF 472 (597)
Q Consensus 398 ~~y~Rf~IPeLLPeldKVLYLD~DvVVq~DLseLw~iDL~-GkviAAV~D~~~~--~~--~~~r~~~~Lnfs~P~i~~~f 472 (597)
.++... ...+.-++|-++++|+|+++++++..=-=+..+ |..+|...--.-. .. .+.|-.+ |...| .+
T Consensus 75 ~~i~~~-~~~~~~evDyLf~~dvd~~F~~~vG~E~L~p~~~~~lva~lHp~~y~~~~~~fpYERrp~----S~AyI--p~ 147 (246)
T 4ayl_A 75 HIFLRI-KEQLERETDYLFFFNANLLFTSPIGKEILPPSDSNGLLGTMHPGFYNKPNSEFTYERRDA----STAYI--PE 147 (246)
T ss_dssp HHHHTT-HHHHHHHCSEEEEECTTEEECSCBCGGGSCCTTSCCEEEEBCGGGC---------------------------
T ss_pred HHHHHH-HHHHHhhCCEEEEEeCCceeeccCCHHHcccCCCCCEEEEechhhhCCCcccCcccCCcc----ccccc--cC
Confidence 233333 444555699999999999999998641112222 4455554321110 00 1111000 00011 13
Q ss_pred CCCCCceecceEEeecHHHHHhhHHHHHHHHHHH---cCCCCCCCCCCcchhhhhhc-cc-eeEeccccccc
Q 007588 473 DVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQL---GYKRPLWKAGSLPLGWVTFY-KH-TMALDKRWHVL 539 (597)
Q Consensus 473 d~~~~yFNSGVmLiNL~kWR~~nitek~~~~l~~---~~~~~l~d~~~LpilNi~F~-g~-i~~Ld~~WN~~ 539 (597)
+.+..|+.+|++==-..+.. ++++.|+.-+.. |.-...|.+..- +|-.|- ++ .+.|++.|++-
T Consensus 148 ~eGdfYY~ga~fGG~~~~vl--~Lt~~c~~~i~~D~~n~I~A~whDESH--LNKYfl~~KP~~vLSPEY~wd 215 (246)
T 4ayl_A 148 GEGRYYYAGGLSGGCTKAYL--KLCTTICSWVDRDATNHIIPIWHDESL--INKYFLDNPPAITLSPAYLYP 215 (246)
T ss_dssp ---CCCBCSSEEEEEHHHHH--HHHHHHHHHHHHHHTTCSSCSCCHHHH--HHHHHHHSCCSEEECGGGGEE
T ss_pred CCCCeEEeeeecCCcHHHHH--HHHHHHHHHHHHHHhCCceEeccchhH--hHHHHHhCCCCeeeCHHHcCC
Confidence 45677888887754444443 466777766555 333467866553 577654 44 44599999875
No 13
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.12 E-value=80 Score=28.01 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHhhHHHHHHHHHHhhCCC---CCCchHHHHHHH-HHHHHHHhhcccCCC
Q 007588 159 EKIKEMKDQVIRAQAYLNFAPP---GSNSHLVKELKL-RIKEVERAVGAATKD 207 (597)
Q Consensus 159 ~~~~~~~dq~~~a~~y~~~a~~---~~~~~~~~el~~-~~~e~~~~~~~~~~~ 207 (597)
+.++.+|+.=-.|-.|++-|=. .++.+.+.+|.+ -|+|+++.|+-...+
T Consensus 10 ~~l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~ 62 (116)
T 2dl1_A 10 AEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKE 62 (116)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccC
Confidence 6778888888888888753322 377778888765 588899988866543
No 14
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.28 E-value=1.8e+02 Score=25.38 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhccc--------------------CChHHHHHHHHHHHHHHHH
Q 007588 214 AFRRMNQMEATLDKASHVY--------------------PDCSAMATKLRAMTYNAEE 251 (597)
Q Consensus 214 ~~~~~~~m~~~~~~~~~~~--------------------~~~~~~~~kl~~~~~~~e~ 251 (597)
--.|++..|.++-.+.+.. .+-..+.+|+.++|++|||
T Consensus 44 YF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYaTee 101 (106)
T 4e61_A 44 YFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhcccc
Confidence 4788888888888776531 1234678999999999997
No 15
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=25.03 E-value=3.2e+02 Score=28.37 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=55.7
Q ss_pred CceeEEEEeCcch--hHHHHHHHHHhhcCCCCcEEEEEEeCCCCHH-H---HHHHHhhCCCCCceEEEEEccCCcccchh
Q 007588 306 DLHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLP-A---ISMWFLLNPPGKATIQIQSIDNFNWLSTK 379 (597)
Q Consensus 306 ~~ihIv~~sDn~l--aasVvI~Slv~Na~~p~~i~FHIvtd~is~e-~---~~~wf~l~~~~~~~Ie~i~v~~f~~l~~~ 379 (597)
..+-|++.+=|.- .+.-+|.|++.....+..+.+.||.|+-+.. . ++.+.. ..+ ..+.++..+.
T Consensus 29 p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~--~~~-~~v~vi~~~~------- 98 (472)
T 1xhb_A 29 PTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK--KLK-VPVHVIRMEQ------- 98 (472)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH--SSS-SCEEEEECSS-------
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHH--HCC-CcEEEEECCC-------
Confidence 3477877777643 4778999999877533235777777665432 2 333322 111 1355554432
Q ss_pred hhhhhhccCCCCCCCcchhhHHHhhhcccccCCCeEEEEecCeeeccC-cHHhhc
Q 007588 380 YNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSD-LGRLWN 433 (597)
Q Consensus 380 ~~~vlk~l~s~~~~~~S~~~y~Rf~IPeLLPeldKVLYLD~DvVVq~D-LseLw~ 433 (597)
+.. ...+|-.--+. ..-+-|++||+|+++..+ |..|..
T Consensus 99 -----------n~G----~~~a~N~g~~~-A~gd~i~flD~D~~~~p~~L~~ll~ 137 (472)
T 1xhb_A 99 -----------RSG----LIRARLKGAAV-SRGQVITFLDAHCECTAGWLEPLLA 137 (472)
T ss_dssp -----------CCC----HHHHHHHHHHH-CCSSEEEEEESSEEECTTCHHHHHH
T ss_pred -----------CCC----hHHHHHHHHHh-ccCCeEEEECCCeEeCccHHHHHHH
Confidence 001 11122111111 135889999999999754 555554
No 16
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=23.22 E-value=4.2e+02 Score=30.19 Aligned_cols=45 Identities=11% Similarity=-0.079 Sum_probs=31.6
Q ss_pred CceeEEEEeCcch-h-HHHHHHHHHhhcCCCCcEEEEEEeCCCCHHH
Q 007588 306 DLHHYAVFSDNVL-A-CAVVVNSTVSFAKEPEKIVFHVVTDSLNLPA 350 (597)
Q Consensus 306 ~~ihIv~~sDn~l-a-asVvI~Slv~Na~~p~~i~FHIvtd~is~e~ 350 (597)
..+-|++.+=|.- . +.-+|.|+..-.-.+.++.+.|+.|+-++..
T Consensus 140 P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T 186 (802)
T 4hg6_A 140 PTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQR 186 (802)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHH
T ss_pred CcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccc
Confidence 4577888876643 3 4778999987665445688999998765443
Done!