Query 007589
Match_columns 597
No_of_seqs 295 out of 1674
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 12:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.4E-52 3.1E-57 448.3 52.5 429 138-590 13-451 (455)
2 PRK10189 MATE family multidrug 100.0 1.5E-47 3.2E-52 413.3 55.4 432 137-590 24-470 (478)
3 PRK00187 multidrug efflux prot 100.0 3.9E-47 8.6E-52 409.7 52.0 430 137-589 5-453 (464)
4 PRK09575 vmrA multidrug efflux 100.0 3.2E-46 6.9E-51 401.9 51.4 422 135-578 5-434 (453)
5 PRK10367 DNA-damage-inducible 100.0 5.1E-46 1.1E-50 397.7 51.6 412 140-577 7-428 (441)
6 PRK01766 multidrug efflux prot 100.0 3E-44 6.5E-49 387.9 51.3 425 138-586 8-446 (456)
7 TIGR01695 mviN integral membra 100.0 1.6E-35 3.5E-40 324.1 51.2 415 144-581 2-429 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2.9E-33 6.3E-38 305.2 49.3 406 145-579 2-433 (488)
9 TIGR00797 matE putative efflux 100.0 1.1E-32 2.3E-37 286.6 41.9 334 150-505 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 2.6E-32 5.7E-37 291.3 45.3 400 144-577 3-409 (416)
11 KOG1347 Uncharacterized membra 100.0 1.8E-34 4E-39 306.4 27.7 430 139-593 25-463 (473)
12 COG0728 MviN Uncharacterized m 100.0 2.1E-30 4.6E-35 273.0 51.1 423 141-581 6-438 (518)
13 PF03023 MVIN: MviN-like prote 100.0 8.4E-30 1.8E-34 273.0 48.1 389 172-582 5-405 (451)
14 PRK10459 colanic acid exporter 100.0 1.1E-25 2.3E-30 245.8 46.4 396 141-577 4-402 (492)
15 COG2244 RfbX Membrane protein 99.9 2.4E-22 5.2E-27 218.8 43.3 387 140-564 4-396 (480)
16 PRK10189 MATE family multidrug 99.8 7.6E-19 1.7E-23 190.0 28.5 202 377-578 26-235 (478)
17 COG0534 NorM Na+-driven multid 99.8 1.1E-18 2.5E-23 187.1 26.6 207 375-581 12-222 (455)
18 PRK00187 multidrug efflux prot 99.8 1.8E-18 3.8E-23 187.0 27.9 204 374-578 4-213 (464)
19 PRK10367 DNA-damage-inducible 99.8 3.6E-18 7.8E-23 183.0 27.6 205 375-579 4-211 (441)
20 PRK09575 vmrA multidrug efflux 99.8 6E-18 1.3E-22 182.4 27.7 207 376-582 8-217 (453)
21 PRK01766 multidrug efflux prot 99.8 1.1E-17 2.4E-22 180.9 27.8 205 375-579 7-217 (456)
22 PF01943 Polysacc_synt: Polysa 99.7 1.7E-14 3.7E-19 144.3 32.9 270 145-447 2-273 (273)
23 TIGR01695 mviN integral membra 99.7 2.7E-15 5.8E-20 164.4 29.1 210 137-367 218-429 (502)
24 TIGR00797 matE putative efflux 99.7 4.9E-15 1.1E-19 153.9 26.1 192 388-579 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.7 4.9E-14 1.1E-18 151.4 30.3 211 137-368 193-405 (451)
26 COG0728 MviN Uncharacterized m 99.6 1.3E-12 2.9E-17 138.7 35.3 231 138-391 228-460 (518)
27 PF01554 MatE: MatE; InterPro 99.6 8.3E-16 1.8E-20 141.7 7.8 161 150-332 1-162 (162)
28 PF01554 MatE: MatE; InterPro 99.6 5.2E-16 1.1E-20 143.0 6.2 160 388-547 1-161 (162)
29 TIGR02900 spore_V_B stage V sp 99.6 4.1E-13 8.9E-18 146.6 28.0 203 138-366 221-434 (488)
30 PRK10459 colanic acid exporter 99.5 1.4E-11 3E-16 134.7 34.2 202 138-366 203-405 (492)
31 PF13440 Polysacc_synt_3: Poly 99.5 2.5E-11 5.5E-16 120.0 31.2 246 160-445 2-250 (251)
32 PRK15099 O-antigen translocase 99.4 1.8E-11 4E-16 130.8 23.5 201 137-365 210-411 (416)
33 COG2244 RfbX Membrane protein 99.4 1.9E-10 4.2E-15 125.3 26.8 187 138-351 209-396 (480)
34 KOG2864 Nuclear division RFT1 99.0 6.2E-06 1.3E-10 84.3 34.4 414 139-579 5-448 (530)
35 PF04506 Rft-1: Rft protein; 98.8 2.3E-06 4.9E-11 93.2 28.3 200 380-579 253-469 (549)
36 KOG1347 Uncharacterized membra 98.8 1.9E-07 4E-12 100.2 19.2 201 376-577 24-227 (473)
37 PF07260 ANKH: Progressive ank 98.5 0.00021 4.5E-09 70.4 27.7 258 139-424 8-285 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 1.1E-05 2.3E-10 72.7 17.8 80 286-367 2-81 (146)
39 PF04506 Rft-1: Rft protein; 98.1 0.00057 1.2E-08 74.7 23.5 216 140-368 251-472 (549)
40 PF01943 Polysacc_synt: Polysa 98.1 0.0013 2.8E-08 65.3 23.9 186 383-579 2-190 (273)
41 PF13440 Polysacc_synt_3: Poly 97.9 0.0035 7.6E-08 61.5 22.1 159 405-577 10-170 (251)
42 COG4267 Predicted membrane pro 97.9 0.042 9.1E-07 55.5 32.7 340 187-570 69-436 (467)
43 PF14667 Polysacc_synt_C: Poly 97.8 0.00011 2.5E-09 65.9 9.2 80 502-581 2-81 (146)
44 KOG2864 Nuclear division RFT1 97.8 0.013 2.8E-07 60.6 23.9 212 140-371 237-454 (530)
45 PF07260 ANKH: Progressive ank 97.1 0.16 3.4E-06 50.6 21.6 152 376-537 7-167 (345)
46 COG4267 Predicted membrane pro 88.1 35 0.00076 35.2 20.9 133 427-573 71-204 (467)
47 PF05975 EcsB: Bacterial ABC t 61.2 1.8E+02 0.0039 30.6 13.8 39 450-488 88-126 (386)
48 PF05977 MFS_3: Transmembrane 47.1 4.3E+02 0.0094 29.1 37.1 43 149-191 17-61 (524)
49 PF06570 DUF1129: Protein of u 42.3 3E+02 0.0066 26.0 11.0 7 559-565 181-187 (206)
50 PF04505 Dispanin: Interferon- 36.2 1.4E+02 0.0031 23.6 6.2 36 436-471 37-72 (82)
51 PTZ00370 STEVOR; Provisional 32.4 97 0.0021 30.8 5.5 20 571-590 273-292 (296)
52 COG0798 ACR3 Arsenite efflux p 32.0 5.8E+02 0.013 26.2 25.3 98 235-335 6-103 (342)
53 PF06808 DctM: DctM-like trans 31.4 6.6E+02 0.014 26.7 17.8 82 373-475 203-284 (416)
54 PF13347 MFS_2: MFS/sugar tran 30.5 6.6E+02 0.014 26.4 15.1 22 519-540 281-302 (428)
55 PF01595 DUF21: Domain of unkn 28.0 4.6E+02 0.0099 23.8 14.8 54 438-491 101-154 (183)
56 COG2211 MelB Na+/melibiose sym 27.3 8.3E+02 0.018 26.5 28.1 31 141-171 11-41 (467)
57 TIGR01478 STEVOR variant surfa 25.2 91 0.002 30.9 3.9 18 571-588 277-294 (295)
58 PF05975 EcsB: Bacterial ABC t 24.7 8.2E+02 0.018 25.6 15.4 35 234-268 90-124 (386)
59 KOG1289 Amino acid transporter 24.4 9.8E+02 0.021 26.4 12.4 106 229-334 277-410 (550)
60 COG4536 CorB Putative Mg2+ and 22.6 5.9E+02 0.013 26.6 9.1 42 234-275 117-158 (423)
61 PF04306 DUF456: Protein of un 22.4 5.4E+02 0.012 22.7 10.1 20 378-397 102-121 (140)
62 PF06946 Phage_holin_5: Phage 21.8 4.5E+02 0.0097 21.5 6.6 51 315-365 33-84 (93)
63 PF01102 Glycophorin_A: Glycop 20.9 1.4E+02 0.003 25.8 3.8 27 341-367 66-92 (122)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.4e-52 Score=448.35 Aligned_cols=429 Identities=28% Similarity=0.436 Sum_probs=398.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007589 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (597)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (597)
+...|+++++++|++++++++.+++++|++++||+|++++||.++++++..++..+.. |+..+++++++|++|++|
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~-gl~~g~~~liaq~~Ga~~--- 88 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFI-GLGTGTTVLVAQAIGAGD--- 88 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHcCCc---
Confidence 3468999999999999999999999999999999999999999999999999986544 899999999999999988
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHH
Q 007589 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (597)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (597)
+++.++..++++++.++++++.+++.+.+.++++.+++.+++ +.+.+..|+++..++.|+..
T Consensus 89 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~ 150 (455)
T COG0534 89 ----------------RKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGAPFAL 150 (455)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998776 99999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhh-cC-CChhhHHHHHHHHHHHHHHHHHHHHhhccc---c---
Q 007589 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-CQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV---L--- 369 (597)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~-~~-~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~---~--- 369 (597)
++..+.+++|+.||+++|++..++++++|+++||+|+++ ++ +|+.|+|+||++++++..++++++++++++ .
T Consensus 151 ~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~ 230 (455)
T COG0534 151 LSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK 230 (455)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhh
Confidence 999999999999999999999999999999999999999 57 999999999999999999999999977653 1
Q ss_pred CCCCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007589 370 MPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSK 449 (597)
Q Consensus 370 ~~~~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~ 449 (597)
...+++++.+|++++.|.|..++.+.+...+.+.+.+++++|++.+|+|+++.++.++.++++.|++++..+++++++|+
T Consensus 231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12356778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchH
Q 007589 450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFR 529 (597)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~ 529 (597)
+|++++++..+.++++++.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..++++|.||++
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHHHHHHHHhcCCCceecccc
Q 007589 530 YAACSMMLVG-AMSSTFLLYAPRA-TGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTD 590 (597)
Q Consensus 530 ~~~~~~~~~~-l~~~~~~~~l~~~-~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~~~ 590 (597)
.+++.+++.. .+.+++.+++... +|..|+|+++.++.++..++..+++ ++++|++...+
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 451 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRL--RRGRWRRKAVA 451 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence 9998777754 3446666666666 9999999999999999999888886 55566654433
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.5e-47 Score=413.29 Aligned_cols=432 Identities=22% Similarity=0.269 Sum_probs=385.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007589 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (597)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (597)
..+..|+++++++|+++++++..+.+++|+.++|++|++++|+++++.++..+... +..|+..+.+++++|++|+++
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~-~~~gl~~g~~~lvsq~~Ga~~-- 100 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMA-FFAAIDLGTTVVVAFSLGKRD-- 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCC--
Confidence 34558999999999999999999999999999999999999999999999887764 455899999999999999998
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHH
Q 007589 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (597)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (597)
++++++.+++++.++++++++.+++.+++.++++.+++.+.|+|+.+.+..|+++..++.|+.
T Consensus 101 -----------------~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 101 -----------------RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA 163 (478)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999853233459999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHHHHHHhhc-cccCC
Q 007589 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC----QLGMPGAAISTVVSQYIVAVTMIWFLNKK-VVLMP 371 (597)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~----~~Gv~Gaa~at~is~~~~~~~~~~~l~~~-~~~~~ 371 (597)
.+...+++++|+.||++.+++..++..++|++++++++++. ++|+.|+++|+.+++++..++.++++.++ +...+
T Consensus 164 ~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~ 243 (478)
T PRK10189 164 AITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALR 243 (478)
T ss_pred HHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccce
Confidence 99999999999999999999999999999999999999863 79999999999999999998887766432 21111
Q ss_pred -------CCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007589 372 -------PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIA 444 (597)
Q Consensus 372 -------~~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs 444 (597)
.+.++..+++++|.|.|..+..+...+.+.+.+.+++++|++++|+|+++.++.++.+++..|++++.+++++
T Consensus 244 ~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg 323 (478)
T PRK10189 244 ISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITG 323 (478)
T ss_pred eeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235567899999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007589 445 SYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYG 524 (597)
Q Consensus 445 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~ 524 (597)
+++|++|++++|+..+.++++++++++.++++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+.++|
T Consensus 324 ~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg 403 (478)
T PRK10189 324 TRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKG 403 (478)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHH-HHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCceecccc
Q 007589 525 VSDFRYAACSMMLVG-AMSSTFLLYA--PRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTD 590 (597)
Q Consensus 525 ~g~~~~~~~~~~~~~-l~~~~~~~~l--~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~~~ 590 (597)
.||++.+++.+++.. ++.+++.+++ ..++|+.|+|++..+++++..++.++++ ++++|++...+
T Consensus 404 ~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~--~~~~W~~~~~~ 470 (478)
T PRK10189 404 ARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRM--VSGRWLWKYPR 470 (478)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH--HcCccccCCCC
Confidence 999999998666543 3334443332 3469999999999999999998877775 67789874433
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.9e-47 Score=409.71 Aligned_cols=430 Identities=19% Similarity=0.208 Sum_probs=384.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007589 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (597)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (597)
+++..|++++.++|.+++++++.+.+++|+++++|+|++++|+++++.++.+.+..+ ..|+..+.+++++|++|+++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~-~~gl~~~~~~i~aq~~Ga~~-- 81 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIF-CVGVIAAVGTLVAIRHGAGD-- 81 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC--
Confidence 345589999999999999999999999999999999999999999999998887754 56899999999999999987
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHH
Q 007589 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (597)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (597)
++++++.+++++.+.++++++..++++ +.++++++++.+++ +.+.+..|+++..++.|+.
T Consensus 82 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~~~~~ 141 (464)
T PRK00187 82 -----------------IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFALPGY 141 (464)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998777665 67999999987665 9999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHHHHHHhhcccc--C
Q 007589 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC----QLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL--M 370 (597)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~----~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~--~ 370 (597)
.+...+++++|+.|+++.+++..++..++|+++||+|++++ ++|+.|+++||.+++++..+++++++++++.. .
T Consensus 142 ~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~ 221 (464)
T PRK00187 142 LSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAY 221 (464)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999863 59999999999999999888777776543211 1
Q ss_pred --C---CCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007589 371 --P---PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIAS 445 (597)
Q Consensus 371 --~---~~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~ 445 (597)
+ +++++..+|+++|.++|..+.++.....+.+++.+++++|++++|+++++.++..+..++..+++++..+++++
T Consensus 222 ~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq 301 (464)
T PRK00187 222 PLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQ 301 (464)
T ss_pred hhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23455678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC--Ch---HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007589 446 YVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK--DP---KVLGIVGTGVLFVSASQPINALAFIFDG 520 (597)
Q Consensus 446 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~--d~---~v~~~~~~~l~i~~~~~~~~~~~~i~~~ 520 (597)
++|++|++++++..+.++.++++++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.++.+
T Consensus 302 ~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~ 381 (464)
T PRK00187 302 HYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMG 381 (464)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999974 44 6888999999999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHH-HHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccc
Q 007589 521 LHYGVSDFRYAACSMMLVG-AMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHT 589 (597)
Q Consensus 521 ~l~~~g~~~~~~~~~~~~~-l~~~~~~~~l~--~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~~ 589 (597)
+++|.||++.+++..++.. ++.+++.+++. +++|+.|+|+++.++.++..+..+.+++|++.+|.+...
T Consensus 382 ~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (464)
T PRK00187 382 AIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLRKAR 453 (464)
T ss_pred hHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999888765 55555554443 568999999999999999998888888777666665433
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.2e-46 Score=401.95 Aligned_cols=422 Identities=18% Similarity=0.225 Sum_probs=384.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh
Q 007589 135 SHTQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKN 213 (597)
Q Consensus 135 ~~~~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~ 213 (597)
+.+.+..|++++.++|+++++++..+++++|+.++++ +|+++++++++++++.++...+ ..++..+.+++++|++|++
T Consensus 5 ~~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~-~~~~~~g~~~lvsq~~Ga~ 83 (453)
T PRK09575 5 MMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGI-GLMVGMGTGSLLSIKRGEG 83 (453)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH-HHHHhccHHHHHHHHhcCC
Confidence 3455678999999999999999999999999999999 5999999999999998887753 4577788899999999988
Q ss_pred hhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhh
Q 007589 214 LTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGS 293 (597)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~ 293 (597)
+ +|+.++.+++++.+.++++++.+++.++++++++.+++.+++ +.+.+..|+++..++.
T Consensus 84 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~~~ 142 (453)
T PRK09575 84 D-------------------LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR--TLELALQYIQVLIWGC 142 (453)
T ss_pred C-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHHHHHHHHHHHHHHH
Confidence 7 899999999999999999999999999999999999987665 8999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccccCC--
Q 007589 294 PAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMP-- 371 (597)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~~~-- 371 (597)
|+..+...+..++|+.|+++.+++..+++.++|++++++|++.+++|+.|+++||++++++..++.++++++++...+
T Consensus 143 ~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 222 (453)
T PRK09575 143 LFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLT 222 (453)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 999999999999999999999999999999999999999999889999999999999999999998887765433222
Q ss_pred ---CCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 372 ---PKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGS-DAMAAHQICMQVWLAVSLLTDALAASGQALIASYV 447 (597)
Q Consensus 372 ---~~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~-~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~ 447 (597)
.++++..+|++++.|.|..++.....+...+.+.+++++|+ +++|+|+++.++..+..++..|++++..|.+++++
T Consensus 223 ~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~ 302 (453)
T PRK09575 223 LKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYF 302 (453)
T ss_pred eccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 23345567999999999999999999999999999999985 68999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC-ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 007589 448 SKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK-DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (597)
Q Consensus 448 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~-d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g 526 (597)
|+||+|++++..+.++++++..+++.+++++++++++.++|+. |+|+.+.+..++++.+++.+++++..+..++++|.|
T Consensus 303 Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g 382 (453)
T PRK09575 303 GARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVN 382 (453)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999995 789999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007589 527 DFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (597)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 578 (597)
|++.++..++...++.+++.++++..+|+.|+|+++.++.++..++.++.++
T Consensus 383 ~~~~~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~ 434 (453)
T PRK09575 383 QGGKALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLW 434 (453)
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHH
Confidence 9999998887766667777777766689999999999999988887766654
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=5.1e-46 Score=397.66 Aligned_cols=412 Identities=22% Similarity=0.297 Sum_probs=362.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007589 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGRL-GSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (597)
Q Consensus 140 ~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~l-G~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (597)
..|+++++++|++++++++.+++++|+.++||+ |++++|+++++.++.+....+ ..|+..+.+++++|++|++|
T Consensus 7 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~~---- 81 (441)
T PRK10367 7 SDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAKN---- 81 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC----
Confidence 378999999999999999999999999999997 677899999999998887754 45788999999999999987
Q ss_pred hcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHH
Q 007589 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVV 298 (597)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 298 (597)
++++++..++++.++++++++..++...+.++++.+++.+++ +.+.+..|+++..++.|+..+
T Consensus 82 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~~~~~ 144 (441)
T PRK10367 82 ---------------PQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEA--VLEQARRFLEIRWLSAPASLA 144 (441)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999888888889999999988776 999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccc--cCCC---C
Q 007589 299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV--LMPP---K 373 (597)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~--~~~~---~ 373 (597)
..++++++|+.||++.|++..++++++|+++|++|++++++|+.|+++||.+++++.+++.+++++++.+ ..+. +
T Consensus 145 ~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~ 224 (441)
T PRK10367 145 NLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLK 224 (441)
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999888777765321 1111 1
Q ss_pred cc-hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 007589 374 MG-ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (597)
Q Consensus 374 ~~-~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~ 452 (597)
.+ +..+|+++|.|.|..+......+.+.+.+.+++++|++++|+|+++.++.++.+++..|++++.+|++++++|+||+
T Consensus 225 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~ 304 (441)
T PRK10367 225 TAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDG 304 (441)
T ss_pred hhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCH
Confidence 12 23578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---chH
Q 007589 453 KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS---DFR 529 (597)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g---~~~ 529 (597)
+++|+..+.++++++++++.++++++++++++..+|++|+|+.+.+..++++.++..+......+++++++|.+ |++
T Consensus 305 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~ 384 (441)
T PRK10367 305 SQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMR 384 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999998876333334444444455555 599
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007589 530 YAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (597)
Q Consensus 530 ~~~~~~~~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 577 (597)
.+++.+.+...+ ..+..+.+|+.|+|++..++..+..+++.+++
T Consensus 385 ~~~~~~~~~~~~----~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~ 428 (441)
T PRK10367 385 NSMAVAAAGFAL----TLLTLPWLGNHGLWLALTVFLALRGLSLAAIW 428 (441)
T ss_pred HHHHHHHHHHHH----HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 998877765322 11122458999999999999999999887765
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3e-44 Score=387.95 Aligned_cols=425 Identities=21% Similarity=0.248 Sum_probs=382.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007589 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (597)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (597)
++..|++++.++|.++++++..+.+++|+.+++++|++++++++++.++...+.. +..|+..+..+.++|++|+++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~-~~~g~~~a~~~~vs~~~g~~~--- 83 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVIL-FGHGLLLALTPIVAQLNGAGR--- 83 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCC---
Confidence 4558999999999999999999999999999999999999999999888766654 455788999999999999987
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHH
Q 007589 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (597)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (597)
+++.++.+++++.+.++++++.+++++++.+++..+++.+++ +.+.+..|+++..++.|+..
T Consensus 84 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~yl~i~~~~~~~~~ 145 (456)
T PRK01766 84 ----------------RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPE--VADIAVGYLHALLWGIPAYL 145 (456)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999987655 88999999999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhh----cCCChhhHHHHHHHHHHHHHHHHHHHHhhcccc----
Q 007589 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF----CQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVL---- 369 (597)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~----~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~---- 369 (597)
+...+++++|+.|+++++++..+++.++|++++++++++ +.+|+.|+++||.+++++..++.+++++++++.
T Consensus 146 ~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~ 225 (456)
T PRK01766 146 LYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFR 225 (456)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHH
Confidence 999999999999999999999999999999999999975 368999999999999999999998887654321
Q ss_pred C---CCCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007589 370 M---PPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASY 446 (597)
Q Consensus 370 ~---~~~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~ 446 (597)
. +.+.++..+|++++.++|..++.......+.+++.+++++|++++|+++++.++.++..+++.+++.+..+.++++
T Consensus 226 ~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 226 LFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred hhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 007589 447 VSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (597)
Q Consensus 447 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g 526 (597)
+|++|++++++..+.+++++++++++.+++++.+++++.++|+.|+++.+.+..++++..++.++++++.+..++++|.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHH-HHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Q 007589 527 DFRYAACSMMLVG-AMSSTFLLYA--PRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWF 586 (597)
Q Consensus 527 ~~~~~~~~~~~~~-l~~~~~~~~l--~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~ 586 (597)
|++.+++..++.. ++.+++.+++ .+.+|+.|+|+++.++.++..++.++++.+ .+|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 446 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK--LQRQP 446 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 9999999888754 4555544443 356999999999999999999988777633 34553
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.6e-35 Score=324.10 Aligned_cols=415 Identities=14% Similarity=0.089 Sum_probs=349.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhh-hhhhhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhhhhhhhhc
Q 007589 144 LIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVEL-ASAGVSISIFNIVSKLFN-IPLLSVATSFVAEDIAKNLTKDLAA 220 (597)
Q Consensus 144 l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~l-aa~~~a~~i~~~~~~~~~-~gl~~~~~~~va~~~~~~~~~~~~~ 220 (597)
++|.+.-.+++++++.+++++|..+++| +|++++ ++++++.++++.+..+.. .|+.++ ++++..+++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~----- 73 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKK----- 73 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhh-----
Confidence 5688888999999999999999999999 999999 899999999988776544 344444 44444433321
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHH
Q 007589 221 GLEGNGKPPNGTTERKQLSSVSTALLLAV-GIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVS 299 (597)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 299 (597)
+++.++.+.+.+.... +.+++.+++.+++++++..+++.+.+++..+.+..|++++.++.|+..+.
T Consensus 74 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 74 -------------EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555555444 44445567788889999988842222236788999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHH--HHHHHHHHHHHHHHHHHHhhccccCCCC--cc
Q 007589 300 LALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAA--ISTVVSQYIVAVTMIWFLNKKVVLMPPK--MG 375 (597)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa--~at~is~~~~~~~~~~~l~~~~~~~~~~--~~ 375 (597)
...++++|+.+|++.+++.+++.++++++..+++ ..++|+.|++ +++++++.+..++.+++++|++.+.+++ ++
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFR 218 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCC
Confidence 9999999999999999999999998887754444 3579999998 9999999999998888776654333333 35
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHH
Q 007589 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSL-LTDALAASGQALIASYVSKGDFKT 454 (597)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~-~~~~l~~a~~p~vs~~~g~~~~~~ 454 (597)
+..+|++++++.|..+..+...+...+++.+.+.+|++++++|+.+.++.+++.. +..+++++..|.+++++|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 5688999999999999999999999999988778899999999999999988765 578899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC----ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHH
Q 007589 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK----DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRY 530 (597)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~----d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~ 530 (597)
+++..++++++...+++|++++++++++++..+|.+ |+|.+..+..++++++++.++.++..++.+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 999999999999999999999999999999999976 5677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007589 531 AACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (597)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~ 581 (597)
+++.++...++++++++++.+.+|+.|+|+++.+++.+..++..++++++.
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998888888888877777899999999999999999888877765543
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.9e-33 Score=305.21 Aligned_cols=406 Identities=17% Similarity=0.212 Sum_probs=347.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 007589 145 IVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLE 223 (597)
Q Consensus 145 ~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~ 223 (597)
.+.+.|.+++++++.+.+++|+.+++| +|++++|+++++.++.+++..+...|+.++....++|+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~--------- 72 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKND--------- 72 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccc---------
Confidence 467899999999999999999999999 8999999999999999998888888999999999999888776
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 007589 224 GNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQ 303 (597)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 303 (597)
+++.++.+.+.+++.++++++.+++++++++++...++.+++ ...++++..+..++..+....+
T Consensus 73 ----------~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~ 136 (488)
T TIGR02900 73 ----------RKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSSVLK 136 (488)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999887765443 3357788889999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhh-----cCCChhhHHHHHHHHHHHHHHHHHHHHhhccc-cCCC-----
Q 007589 304 GIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYF-----CQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV-LMPP----- 372 (597)
Q Consensus 304 ~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~-----~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~-~~~~----- 372 (597)
+++|+.+|++..+..++++.+++++++..++.. ..+|+.|+++++.+++++..++.+++.+++.+ +.+.
T Consensus 137 ~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (488)
T TIGR02900 137 GYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDY 216 (488)
T ss_pred HHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999999998877666542 24678899999999999999988776654322 1111
Q ss_pred -CcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh----C---hhHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007589 373 -KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ----G---SDAMAAH----QICMQVWLAVSLLTDALAASGQ 440 (597)
Q Consensus 373 -~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~----g---~~~laa~----~i~~~i~~l~~~~~~~l~~a~~ 440 (597)
+.+++.+|++++++.|..+.++...+...+++.++++. | .++.+.+ +++.++..++..+..+++++..
T Consensus 217 ~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~ 296 (488)
T TIGR02900 217 KSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALV 296 (488)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHH
Confidence 12345789999999999999999999999999888764 2 2222332 3556677778777899999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007589 441 ALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDG 520 (597)
Q Consensus 441 p~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~ 520 (597)
|.+++++|++|.++.++..++.+++...+++|+++++.++++++..+|.++++ +..+++++++..++.++..+..+
T Consensus 297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~ 372 (488)
T TIGR02900 297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS 372 (488)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986543 56789999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 521 LHYGVSDFRYAACSMMLVGAMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (597)
Q Consensus 521 ~l~~~g~~~~~~~~~~~~~l~~~~~~~~l~--~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~ 579 (597)
++++.||++..++.+.+..++++++++.+. +.+|+.|+|+++.+++++..++.++..++
T Consensus 373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888888777765 88999999999999999988888777643
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.1e-32 Score=286.59 Aligned_cols=334 Identities=31% Similarity=0.444 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007589 150 PAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (597)
Q Consensus 150 p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (597)
|.++.+++..+.+.+|+.+++++|++++++++++.++.+.... +..|+.++..+.+++++|+++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~-~~~~i~~~~~~~~s~~~g~~~--------------- 64 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFS-ILMGLGTATTALVAQAVGAGN--------------- 64 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHH-HHHHHHHhHHHHHHHHHCCCC---------------
Confidence 7789999999999999999999999999999999888776664 466899999999999998876
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 007589 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGF 309 (597)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 309 (597)
+++.++.+++.+.+.++++++.+++++++++++..+++.+++ ..+.+..|++++.+..++..+..+..+++|+.
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 138 (342)
T TIGR00797 65 ----YQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELAQDYLRILILGIPAYLLNFVLRGFLRGQ 138 (342)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999998875544 78889999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHh-hcC-CChhhHHHHHHHHHHHHHHHHHHHHhhccc-cC----CCCcchhhHHHH
Q 007589 310 KDTKTPVLCLGIGNLLAVFLFPILIY-FCQ-LGMPGAAISTVVSQYIVAVTMIWFLNKKVV-LM----PPKMGALQFGDY 382 (597)
Q Consensus 310 ~~~~~~~~~~~~~~v~~i~l~~lli~-~~~-~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~-~~----~~~~~~~~~~~~ 382 (597)
+|++.+++..+++.++++++++++++ .++ +|+.|+++++.+++++..++.+++++++.+ .. +.++++..+|++
T Consensus 139 ~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 218 (342)
T TIGR00797 139 GDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRL 218 (342)
T ss_pred CCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHH
Confidence 99999999999999999999999987 567 889999999999999999998887765321 11 234566788999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007589 383 VKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFV 462 (597)
Q Consensus 383 lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~~~~~~~~~~ 462 (597)
++++.|.++..+..++...+++.+++.+|++++++|+++.++.++..+++.+++++..|.++++++++|.+++++..+++
T Consensus 219 ~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T TIGR00797 219 LKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVA 298 (342)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHH
Q 007589 463 LKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFV 505 (597)
Q Consensus 463 l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~ 505 (597)
+++.+.++++.+.++.++++++.++|++|+++.+.+..++++.
T Consensus 299 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 299 LKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.6e-32 Score=291.30 Aligned_cols=400 Identities=15% Similarity=0.109 Sum_probs=342.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhccc
Q 007589 144 LIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGL 222 (597)
Q Consensus 144 l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~ 222 (597)
++|.+.....++++..+.+++-..+++| +|++++|.++...++...+..+...|+.++.+.+++|+ ++|
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~-------- 72 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQ-------- 72 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCC--------
Confidence 5677788889999999999999999999 99999999999999999888887888888888888776 222
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHH
Q 007589 223 EGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLAL 302 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 302 (597)
+++.++.+.+++.+.++.+++.+++++++.+|+...++.+++ ...+..+..+..++..+....
T Consensus 73 -----------~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 135 (416)
T PRK15099 73 -----------PQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWANLL 135 (416)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999988765543 335566666767777888999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccc----cCCCCcchhh
Q 007589 303 QGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV----LMPPKMGALQ 378 (597)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~----~~~~~~~~~~ 378 (597)
++++|+.+|++.++...+++.++|+++ +++++.. .|+.|+++|+++++.+..++.++++++++. ..++++++..
T Consensus 136 ~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (416)
T PRK15099 136 LAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGL 213 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHH
Confidence 999999999999999999999999887 5555432 399999999999999998887777755432 1134456677
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-hhChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 007589 379 FGDYVKSGGFLLGRTLAVLITMTLGTSMAA-RQGSDAMAAHQICMQVWLA-VSLLTDALAASGQALIASYVSKGDFKTVR 456 (597)
Q Consensus 379 ~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~-~~g~~~laa~~i~~~i~~l-~~~~~~~l~~a~~p~vs~~~g~~~~~~~~ 456 (597)
+|+++++|.|..++++..++...+++.+++ .+|++++|+|+++.++.+. ...+..+++++.+|.+++. +|.++.+
T Consensus 214 ~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~ 290 (416)
T PRK15099 214 AGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDIT 290 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHH
Confidence 899999999999999999999999999996 7899999999999999775 5788899999999999995 6789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHH
Q 007589 457 EITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMM 536 (597)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~ 536 (597)
+..++..++...++++.++++++++++++.+|.+|+ ++.+.+++++++++.++...+..+...+.+.++++......+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 368 (416)
T PRK15099 291 REIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEV 368 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876 566788999999999888888877777778888888888887
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007589 537 LVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (597)
Q Consensus 537 ~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 577 (597)
...++.+++++++++.||..|++++..+++.+..++.....
T Consensus 369 ~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~ 409 (416)
T PRK15099 369 SQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVF 409 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888999999999999999999888766554
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=306.39 Aligned_cols=430 Identities=21% Similarity=0.233 Sum_probs=384.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007589 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (597)
Q Consensus 139 ~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (597)
.+.|++++++.|+++..+.+++.+++++.++||+|+.++++.+++++..+....-...|+.++..++++|++|.++
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~---- 100 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK---- 100 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc----
Confidence 4479999999999999999999999999999999999999999999999997766777899999999999999988
Q ss_pred hcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHH
Q 007589 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVV 298 (597)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 298 (597)
++....+.+++..+....+++.+. ++.+.++++..++++++ +...+..|.+++++..+.+..
T Consensus 101 ---------------~~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~--i~~~a~~y~~~~ip~~~a~~~ 162 (473)
T KOG1347|consen 101 ---------------FTALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPD--ISRDAGSYAFMLIPGLFSYAV 162 (473)
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChh--HHHHHhhhHhhhcchhhhhHH
Confidence 788888899998888888888777 66678999999999887 999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhcc-ccCCCCc--c
Q 007589 299 SLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKV-VLMPPKM--G 375 (597)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~-~~~~~~~--~ 375 (597)
....+.++|+++++.+..++..+..++|+.+++++++.+++|+.|++++..+++|+...++.+|..... ...|..+ .
T Consensus 163 ~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~ 242 (473)
T KOG1347|consen 163 SFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE 242 (473)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh
Confidence 999999999999999999999999999999999999999999999999999999999999999986643 2222222 2
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007589 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQG--SDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (597)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g--~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~ 453 (597)
...++++++++.|..++...+++.+.+..++.+.++ ..++++.+++.++....++++.+++.+..+++++.+|+++++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 557889999999999999999999999999999997 588999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHH
Q 007589 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (597)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (597)
.+|......+..++..+...+..+...++.+..+|++|+|+.+.+..+.++++++.++++.+.++.++.+|.|+++...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHH----HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccccchh
Q 007589 534 SMML----VGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKSGPWWFLHTDLEG 593 (597)
Q Consensus 534 ~~~~----~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~~w~~~~~~~~~ 593 (597)
.++. .+++...+. -+..++|..|+|+++..+..+........ ....+|.++.++.+.
T Consensus 403 vnl~~yyl~G~p~g~~l-~~~~~~g~~glw~G~~~~~~~~~~~l~~~--~~~tdW~~~~~~a~~ 463 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYL-GFFTKFGVKGLWIGILLGFSVQTLVLAIV--TARTDWKNQAEKAFA 463 (473)
T ss_pred EeeeeeeEecCcceeEE-EEEEecCceEEEeehHHHHHHHHHHHHHh--eeeccHHHHHHHHHH
Confidence 5543 343333222 23467999999999999966665555544 366789977665433
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=2.1e-30 Score=273.03 Aligned_cols=423 Identities=12% Similarity=0.056 Sum_probs=361.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhh-hhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007589 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVE-LASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (597)
Q Consensus 141 ~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~-laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (597)
.+.++|.++-.....+++++.+++...+++. +|... -+|+.+++.++|.+..++..|. -.+++++...-++++++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaega--fs~aFVPv~~~~~~~~~- 82 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGA--FSSAFVPVLAEAKKKEG- 82 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchh--HhhhhhHHHHHHHHcch-
Confidence 4678888899999999999999999999999 99964 6799999999999999988764 22344444322222111
Q ss_pred hcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCC-cccchHHHHHHHHHHHhhhHHHH
Q 007589 219 AAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS-ASAMHGPAKKFLMLRALGSPAFV 297 (597)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~-~~~~~~~a~~~l~~~~~~~~~~~ 297 (597)
+++.++.......+...+.+.++++..+++|++.+.+..+. |++....+....+++.|.+++..
T Consensus 83 ---------------~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~is 147 (518)
T COG0728 83 ---------------EEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFIS 147 (518)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 45555555666657777778888889999999995543332 21123368888899999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--c
Q 007589 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKM--G 375 (597)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~--~ 375 (597)
+...+.++||+.+++..|.+.+++.|+.-+.....+......-..+.+||++++-+.+.++.++.++|.+...++++ +
T Consensus 148 L~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~ 227 (518)
T COG0728 148 LSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK 227 (518)
T ss_pred HHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC
Confidence 99999999999999999999999999988866665554433347789999999999999999999999876666655 4
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHH
Q 007589 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIASYVSKGDFKT 454 (597)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~-~~~~~l~~a~~p~vs~~~g~~~~~~ 454 (597)
+.+.|++++...|..+.....++...+++.+++.+.+..++.++.+.++++++. ++..+++++..|.+|++..++|.++
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~ 307 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPE 307 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHH
Confidence 458999999999999999999999999999999999999999999999999976 6679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC----ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHH
Q 007589 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTK----DPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRY 530 (597)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~----d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~ 530 (597)
.++..++++++++++.+|.++++.++++++++++.. +++....+.+.+..++++.++..+..++...+++.+|+|.
T Consensus 308 ~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~kt 387 (518)
T COG0728 308 FLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKT 387 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCc
Confidence 999999999999999999999999999999998842 5566788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007589 531 AACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (597)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~ 581 (597)
++++.++..++++.+++.+.+.+|..|++++..++.++.+.+.++.++++.
T Consensus 388 P~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 388 PMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988889999999999999999898888888876544
No 13
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=8.4e-30 Score=273.02 Aligned_cols=389 Identities=14% Similarity=0.143 Sum_probs=342.9
Q ss_pred cChh-hhhhhhhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 007589 172 LGSV-ELASAGVSISIFNIVSKLFNI-PLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAV 249 (597)
Q Consensus 172 lG~~-~laa~~~a~~i~~~~~~~~~~-gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (597)
+|.. +.+++.++..+++.+..++.. ++.++..|...+.. +++ +++.++..++.+.+..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~-------------------~~~~~~f~~~~~~~~~ 64 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKG-------------------EEEARRFISTLLTILL 64 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-------------------HHHHHHHHHHHHHHHH
Confidence 6765 477999999999999877653 34445555554443 222 6788889999999999
Q ss_pred HHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 007589 250 GIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFL 329 (597)
Q Consensus 250 ~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l 329 (597)
++.++++++.+++++++...+....+++..+.+..++++..|..++..+..++.+++|+++|+..|...+++.++..++.
T Consensus 65 ~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~ 144 (451)
T PF03023_consen 65 IISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILS 144 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876666678899999999999999999999999999999999999999999999886664
Q ss_pred HHHHHhhcCCC---hhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCc--chhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007589 330 FPILIYFCQLG---MPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKM--GALQFGDYVKSGGFLLGRTLAVLITMTLGT 404 (597)
Q Consensus 330 ~~lli~~~~~G---v~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~ 404 (597)
..++. ...| +.+.++|.+++..++.++.+...+|...+.++++ +++..|++++...|.++.....++...+++
T Consensus 145 ~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~ 222 (451)
T PF03023_consen 145 LLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDR 222 (451)
T ss_pred HHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 3466 8999999999999999999999998776655554 445689999999999999999999999999
Q ss_pred HHHhhhChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007589 405 SMAARQGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGS 483 (597)
Q Consensus 405 ~l~~~~g~~~laa~~i~~~i~~l~~-~~~~~l~~a~~p~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 483 (597)
.+++.+++..+++++.+.++.+++. .+..+++++..|.+++...++|.++.++..+++++..+.+.+|+++++..++++
T Consensus 223 ~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~ 302 (451)
T PF03023_consen 223 ALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEP 302 (451)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999876 456789999999999999999999999999999999999999999999999999
Q ss_pred hhcccC----CChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 007589 484 LAPLFT----KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVW 559 (597)
Q Consensus 484 l~~lf~----~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~Gv~ 559 (597)
+++++. .|.+..+.....+.+++++.++.++..++...+++.+|+|.+++.+++..++++.+.+.+.+.+|..|++
T Consensus 303 iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Gla 382 (451)
T PF03023_consen 303 IVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGLA 382 (451)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999985 3677788999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 007589 560 AGLTLFMGLRTVAGFVRLLSKSG 582 (597)
Q Consensus 560 ~a~~i~~~i~~~~~~~~l~~~~~ 582 (597)
++..++.++.+++.++.++++.+
T Consensus 383 la~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 383 LATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999998888866554
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=1.1e-25 Score=245.83 Aligned_cols=396 Identities=12% Similarity=0.088 Sum_probs=328.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhh
Q 007589 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLA 219 (597)
Q Consensus 141 ~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~ 219 (597)
.++..+.+....++++...+.+++...+++| +|++++|.++.+.++.+++..+...|+..+.. + ++++
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~----~~~~--- 72 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----Q----RQDI--- 72 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----h----cccC---
Confidence 5678888999999999999999999999999 99999999999999999999888887665431 1 1110
Q ss_pred cccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHH
Q 007589 220 AGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVS 299 (597)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 299 (597)
. ++...+.+++.++.+++.+++++++++++..+++.+ + ...++++..+..++..+.
T Consensus 73 --------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~------~~~~~~~~~~~~~~~~~~ 128 (492)
T PRK10459 73 --------------S---HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNP-E------LAPLIKTLSLAFVIIPIG 128 (492)
T ss_pred --------------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-h------hHHHHHHHHHHHHHHHHh
Confidence 1 123456667777788887888888888887766533 2 345677777888888888
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCcchhhH
Q 007589 300 LALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQF 379 (597)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 379 (597)
....+.+|..++++......++..++..++...+.+ .+.|+.+.+++.+++..+..++.++..+++ .+.++++++..+
T Consensus 129 ~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 206 (492)
T PRK10459 129 QQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-YRPALHFSLASV 206 (492)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-CCccceecHHHH
Confidence 899999999999999999999988888777666554 478999999999999988877654443332 222333556778
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHH
Q 007589 380 GDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVRE 457 (597)
Q Consensus 380 ~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~-g~~~laa~~i~~~i~~l~~~~-~~~l~~a~~p~vs~~~g~~~~~~~~~ 457 (597)
|++++++.|.+...+...+...+|+.+++++ |+++++.|+.+.++.+++... ...+++...|.+++. ++|.++.++
T Consensus 207 k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~ 284 (492)
T PRK10459 207 KPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRV 284 (492)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHH
Confidence 9999999999999999999999999998875 999999999999998875544 455788899999885 578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Q 007589 458 ITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMML 537 (597)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~ 537 (597)
.+++.+++...+++|+.+++.+++++++.++.+++ +..+...++++++..++..+..+...++++.||+|..+..+++
T Consensus 285 ~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~ 362 (492)
T PRK10459 285 GFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVF 362 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHH
Confidence 99999999999999999999999999999998765 7788899999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007589 538 VGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (597)
Q Consensus 538 ~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 577 (597)
..++.++..+.+...+|+.|+++++.++..+..+..++.+
T Consensus 363 ~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 363 KTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776667789999999999999988887777765
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.93 E-value=2.4e-22 Score=218.77 Aligned_cols=387 Identities=17% Similarity=0.151 Sum_probs=309.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhh
Q 007589 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDL 218 (597)
Q Consensus 140 ~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~ 218 (597)
..+++.|.+.....++++..+.+++....++| +|+++.|.++.+.++..++..+...|+..+.+..++++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~---- 79 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGE---- 79 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccH----
Confidence 35778899999999999999999999999999 9999999999999999999999888888888887777643332
Q ss_pred hcccCCCCCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHH
Q 007589 219 AAGLEGNGKPPNGTTERKQLSS-VSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (597)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (597)
+...... +...+.+.++.+.+.........+. ++ .....+++..+..+...
T Consensus 80 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~ 131 (480)
T COG2244 80 ---------------YLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DP------VLALLLRILSLALLLLP 131 (480)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Ch------hhHHHHHHHHHHHHHHH
Confidence 2222332 3333333333333333322222111 11 24456677888999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHh-hccccCCCCcc-
Q 007589 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLN-KKVVLMPPKMG- 375 (597)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~-~~~~~~~~~~~- 375 (597)
.....++.+|+.++++...+..+.. ..-+.....+.. .......++..++......+...+.. +++...++.++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (480)
T COG2244 132 LSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF 207 (480)
T ss_pred HHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc
Confidence 9999999999999999999994444 111122222221 34555667777777776666655553 23323333333
Q ss_pred -hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007589 376 -ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (597)
Q Consensus 376 -~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~-g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~ 453 (597)
...++++++++.|.....+...+...+|+.+++.+ |+++++.|+.+.++......+..+++.+..|.+++.+.++|.+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 67889999999999999999999999999999885 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHH
Q 007589 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (597)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (597)
+.++..++.+++..++++|..+++.++++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 365 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLL 365 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 999999999999999999999999999999999998876 444888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 007589 534 SMMLVGAMSSTFLLYAPRATGLPGVWAGLTL 564 (597)
Q Consensus 534 ~~~~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i 564 (597)
.+.+..+.+..+++.+++.+|+.|+..+...
T Consensus 366 ~~~~~~i~~~~l~~~li~~~g~~g~~~a~~~ 396 (480)
T COG2244 366 ISLISALLNLILNLLLIPRFGLIGAAIATAS 396 (480)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH
Confidence 9999999999999999999999999999933
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.84 E-value=7.6e-19 Score=190.03 Aligned_cols=202 Identities=19% Similarity=0.156 Sum_probs=186.3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 007589 377 LQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVR 456 (597)
Q Consensus 377 ~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~~~~ 456 (597)
..+|+++++++|.+++++...+...+++.+++++|++++|+++++.++..+...+..+++++..+.+++++|++|+++++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC--CChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHH
Q 007589 457 EITNFVLKIGVLTGVSLATILGLSFGSLAPLFT--KDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (597)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~--~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (597)
+..+.++.++++++++.+++.+++++++..+|. .|+|+.+.+..++++..++.++..+..++.+++++.||++.+++.
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 999999999999999999999999999999995 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007589 535 MMLVGAMSSTFLLYAP------RATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (597)
Q Consensus 535 ~~~~~l~~~~~~~~l~------~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 578 (597)
+++..++++++.++++ +.+|+.|+|+|+.+++.+..++..+.+.
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777766554443 3689999999999999988777655553
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.83 E-value=1.1e-18 Score=187.06 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=196.0
Q ss_pred chhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007589 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (597)
Q Consensus 375 ~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~~ 454 (597)
.....|+++++++|.++.++.......+|+.++++++++++|+-++++++..++..+..+++.+..+.++|++|+||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHH
Q 007589 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (597)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (597)
+++...+++.++++++++..++.+.+++++..++..++|+.+.+.+++.+..++.++..+..++.+++++.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007589 535 MMLVGAMSSTFLLYAPRA----TGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (597)
Q Consensus 535 ~~~~~l~~~~~~~~l~~~----~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~ 581 (597)
+++..+.++.++++++.. +|+.|+++|+.++..+.+++.++++++++
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998887766554 89999999999999999998888776544
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.83 E-value=1.8e-18 Score=186.97 Aligned_cols=204 Identities=16% Similarity=0.123 Sum_probs=185.9
Q ss_pred cchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007589 374 MGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (597)
Q Consensus 374 ~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~ 453 (597)
++++.+|++++.+.|.++.++...+...+++.+++++|++++|+++++.++.++...+..+++++..+.+++++|++|++
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHH
Q 007589 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (597)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (597)
++++..+.++.+.++++++..++++ +.+++..+|..|+|+.+.+..++++..++.++..+...+++.+++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877765 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007589 534 SMMLVGAMSSTFLLYAPR------ATGLPGVWAGLTLFMGLRTVAGFVRLL 578 (597)
Q Consensus 534 ~~~~~~l~~~~~~~~l~~------~~Gi~Gv~~a~~i~~~i~~~~~~~~l~ 578 (597)
.+++..++++++.+.++. .+|+.|+++|+.++..+..+...++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~ 213 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIR 213 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999988888887655432 489999999999998777665554443
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.82 E-value=3.6e-18 Score=183.01 Aligned_cols=205 Identities=10% Similarity=-0.003 Sum_probs=188.5
Q ss_pred chhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 007589 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFK 453 (597)
Q Consensus 375 ~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~-g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~ 453 (597)
-++..|+++|+++|.++.++...+...+|+.+++++ |++++|+.+++.++..+...+..+++.+..+.+++++|++|++
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 345688999999999999999999999999999998 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHH
Q 007589 454 TVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAAC 533 (597)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~ 533 (597)
++++..++++.++++++++..+....+.+++..++..|+|+.+.+.+++++..++.++..+..++.+++++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 534 SMMLVGAMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (597)
Q Consensus 534 ~~~~~~l~~~~~~~~l~--~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~ 579 (597)
.+++..++++++.++++ ..+|+.|+|+|+.+++++..++..+.+++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887766554 46899999999999999887776655543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.81 E-value=6e-18 Score=182.40 Aligned_cols=207 Identities=13% Similarity=0.043 Sum_probs=190.2
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007589 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (597)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~-g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~~ 454 (597)
+...|++++.+.|..+.++...+...+|+.+++++ |++++++++++.++..+...+..+++.+..+.+++++|++|+|+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 34678999999999999999999999999999996 99999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHH
Q 007589 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (597)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (597)
+++..+.++.++++++++.+++++++++++..+|..|+++.+.+..++++..++.++..+.....+++++.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007589 535 MMLVGAMSSTFLLYAP--RATGLPGVWAGLTLFMGLRTVAGFVRLLSKSG 582 (597)
Q Consensus 535 ~~~~~l~~~~~~~~l~--~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~~ 582 (597)
++...++++++.++++ +++|+.|+|+++.+++.+..++.++++++++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~ 217 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRA 217 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 8888888877765554 46999999999999999988877666644433
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.81 E-value=1.1e-17 Score=180.90 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=189.1
Q ss_pred chhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007589 375 GALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKT 454 (597)
Q Consensus 375 ~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~~ 454 (597)
.++.+|++++++.|..+..+...+...+++.+++++|++++++++++.++..+...+..+++.+..|.+++++|++|+++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 34568999999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHH
Q 007589 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (597)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (597)
+++..+.++.+.++++++++++++++++++..++..|+++.+.+..++++..++.++..+..++.+.+++.||++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 535 MMLVGAMSSTFLLYAP------RATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (597)
Q Consensus 535 ~~~~~l~~~~~~~~l~------~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~ 579 (597)
+.+..++++++.+.++ +.+|+.|+++++.+++++..++.++.+++
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888877765544 45899999999999999988877766543
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.72 E-value=1.7e-14 Score=144.33 Aligned_cols=270 Identities=17% Similarity=0.241 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 007589 145 IVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLE 223 (597)
Q Consensus 145 ~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~ 223 (597)
+|.+....+++++..+.+++...++.| +|++++|.+++..++.+++..+...|+..+....+++...+
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~----------- 70 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK----------- 70 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----------
Confidence 466777889999999999999999999 99999999999999999999888888777777666654221
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Q 007589 224 GNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQ 303 (597)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 303 (597)
+++.+.+....+...++.+++..++. .+...++.++. ...+........++........
T Consensus 71 ----------~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 129 (273)
T PF01943_consen 71 ----------KELRSAYFSSVLFLLLIFSLIFLLIL-----LIASFFGNPSL------SLILIILALLILILSSLSSVFS 129 (273)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCCchH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 13334444444444433333322222 22224443322 2223322222235788889999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHHHH
Q 007589 304 GIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYV 383 (597)
Q Consensus 304 ~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 383 (597)
.++++.++.+.....+++..++.+++..+++.. ..++.+..++..++..+..++.+++.+|+.+..+...+++..|+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (273)
T PF01943_consen 130 GLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFFSKKFFKEIL 208 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchHHHHHHH
Confidence 999999999999999999999888776666654 3458999999999999999999888887654333344577899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 384 KSGGFLLGRTLAVLITMTLGTSMAARQ-GSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYV 447 (597)
Q Consensus 384 k~~~p~~~~~l~~~i~~~i~~~l~~~~-g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~ 447 (597)
+.+.|.....+...+....+..+++.+ |++++|.|+++.++......+..++.++..|.+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 209 RFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999986 8999999999999999999999999999999998753
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.72 E-value=2.7e-15 Score=164.40 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=187.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007589 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (597)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (597)
+.+..|++++.+.|..++++...+...+|..+.+.+|++++++++.+..+.+....++..++.++..+.+++.+++++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~-- 295 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGN-- 295 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 345679999999999999999999999999885559999999999999998887766666788999999999998887
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCC--cccchHHHHHHHHHHHhhhH
Q 007589 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPS--ASAMHGPAKKFLMLRALGSP 294 (597)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~--~~~~~~~a~~~l~~~~~~~~ 294 (597)
+++.++.+.+.+.+..+++++.+++++++++++..++..++ +++..+.+..++++.+++.+
T Consensus 296 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~ 358 (502)
T TIGR01695 296 -----------------WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLI 358 (502)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999886543 34467788999999999999
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 007589 295 AFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKV 367 (597)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~ 367 (597)
+..+.......+++.||++.+++..++..++|++++++++. .+|+.|+++|+.+++.+..++..++++|+.
T Consensus 359 ~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 359 FYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred HHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999874 489999999999999999999988887654
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.70 E-value=4.9e-15 Score=153.93 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007589 388 FLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGV 467 (597)
Q Consensus 388 p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~~~~~~~~~~l~~~~ 467 (597)
|.++.++...+...+++.+++++|++++++++++.++..+...+..+++++..|.+++++|++|++++++..+..+.+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH
Q 007589 468 LTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLL 547 (597)
Q Consensus 468 ~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~ 547 (597)
+++++.+++++++++++..+|..|++..+.+..++++++++.++.++..+..+++++.||.+..++...+..++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987888888999999999999999999999999999999999999988887776666554
Q ss_pred HhcC---C-CChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 548 YAPR---A-TGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (597)
Q Consensus 548 ~l~~---~-~Gi~Gv~~a~~i~~~i~~~~~~~~l~~ 579 (597)
++.. + +|+.|++++..++.++..++.++.+++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433 3 669999999999999888877666543
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.67 E-value=4.9e-14 Score=151.41 Aligned_cols=211 Identities=20% Similarity=0.271 Sum_probs=190.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007589 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (597)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (597)
.++..|++++...|.+++.....+..++|+.+.+.+++..+++++++..++++...++..++.++.-|..++...++|
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d-- 270 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGD-- 270 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 345589999999999999999999999999999999999999999999999999988888888888888888877666
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCC--CCcccchHHHHHHHHHHHhhhH
Q 007589 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGV--PSASAMHGPAKKFLMLRALGSP 294 (597)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~--~~~~~~~~~a~~~l~~~~~~~~ 294 (597)
.++.++.+++.+...+++.+++++.++.+++|+.+++.. .-+.+-.+....++++.++++|
T Consensus 271 -----------------~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~ 333 (451)
T PF03023_consen 271 -----------------WEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLP 333 (451)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhH
Confidence 788999999999999999999999999999999987742 2233346678889999999999
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 007589 295 AFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV 368 (597)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~ 368 (597)
++.+...+...+.+++|++.|++..+++.++|++++.+++. .+|+.|.++|+.++.++.+++++++++|+..
T Consensus 334 ~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 334 FYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988874 5899999999999999999999999887754
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.63 E-value=1.3e-12 Score=138.66 Aligned_cols=231 Identities=22% Similarity=0.236 Sum_probs=195.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007589 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (597)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (597)
++..|++.+...|+.++..++.+..++|+.+-+.+.+...+.+.++..++++...+++.++.++.-+-.++....++
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~--- 304 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGD--- 304 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCC---
Confidence 36689999999999999999999999999999999999999999999999999999998888888888877766554
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCc--ccchHHHHHHHHHHHhhhHH
Q 007589 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSA--SAMHGPAKKFLMLRALGSPA 295 (597)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~--~~~~~~a~~~l~~~~~~~~~ 295 (597)
.++..+..+.++.+++++.++.++.+.++++|+.+.+..... ++-.......+....+++++
T Consensus 305 ----------------~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 305 ----------------WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 788899999999999999999999999999999987744332 11245567788999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCcc
Q 007589 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMG 375 (597)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~~ 375 (597)
+.+.-++...+.+++|+|+|+++.+++.++|+++++.++ +.+|..|.++++.++.++++.++++.++|+....+ ...
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~~ 445 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GRG 445 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cch
Confidence 999999999999999999999999999999999997766 45788889999999999999999999888764333 444
Q ss_pred hhhHHHHHHHhHHHHH
Q 007589 376 ALQFGDYVKSGGFLLG 391 (597)
Q Consensus 376 ~~~~~~~lk~~~p~~~ 391 (597)
+..+. ..|..+-..+
T Consensus 446 ~~~~~-~~k~~l~~~i 460 (518)
T COG0728 446 WGLFL-ILKLLLASAI 460 (518)
T ss_pred hhHHH-HHHHHHHHHH
Confidence 44444 4454433333
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.62 E-value=8.3e-16 Score=141.65 Aligned_cols=161 Identities=26% Similarity=0.391 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007589 150 PAIAGQVIDPLAQLMETAYVGRLGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPP 229 (597)
Q Consensus 150 p~~~~~~~~~l~~~vd~~~ig~lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~ 229 (597)
|.++.+++..+...+|+.+++++|++++++++++..+.+.... +..|+..+..++++|++|++|
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~--------------- 64 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGD--------------- 64 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSS---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh-hcccccccccceeeccccccc---------------
Confidence 8899999999999999999999999999999999999999886 566899999999999999887
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 007589 230 NGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGF 309 (597)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 309 (597)
+++.++.++.++.+.++++++.+++++++.+++..+++.+++ +.+.+..|+++..+..|+..+....++++++.
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (162)
T PF01554_consen 65 ----YKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIARQYLRIMAFSIPFFALFFVFSGILQGI 138 (162)
T ss_dssp ----TTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCC
T ss_pred ----ccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHhhccchhhhhHHHHHHHHHHHHHHHHHC
Confidence 788999999999999999999999999999999999988776 99999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHH-HHHHHHHHH
Q 007589 310 KDTKTPVLCLGIGN-LLAVFLFPI 332 (597)
Q Consensus 310 ~~~~~~~~~~~~~~-v~~i~l~~l 332 (597)
||++.+++..++.. +++++++|+
T Consensus 139 g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 139 GRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp STHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999 999999875
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.61 E-value=5.2e-16 Score=143.00 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 007589 388 FLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDFKTVREITNFVLKIGV 467 (597)
Q Consensus 388 p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~~~~~~~~~~~l~~~~ 467 (597)
|..++++...+...+++.+++++|++++++++++.++.++...+..+++++..+.+++++|++|++++++..+.++.+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH-HHHHHHH
Q 007589 468 LTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVG-AMSSTFL 546 (597)
Q Consensus 468 ~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~-l~~~~~~ 546 (597)
++++++++++.++++++..+|+.|+++.+.+.+++++..++.++..+.....+++++.||++..++..++.. ++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 7777765
Q ss_pred H
Q 007589 547 L 547 (597)
Q Consensus 547 ~ 547 (597)
+
T Consensus 161 y 161 (162)
T PF01554_consen 161 Y 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 29
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.60 E-value=4.1e-13 Score=146.57 Aligned_cols=203 Identities=18% Similarity=0.257 Sum_probs=171.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhh------hhhh----hhHHHHHHHHHHHhhhhhhhHHHHHH
Q 007589 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVE------LASA----GVSISIFNIVSKLFNIPLLSVATSFV 206 (597)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~------laa~----~~a~~i~~~~~~~~~~gl~~~~~~~v 206 (597)
.+..|++++.++|.+++++...+.+.+|+.++++ +++.. .+.+ +++.++..+.. ....++..+..+.+
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999998 54321 2222 23344555553 34456778889999
Q ss_pred HHHHHhhhhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHH
Q 007589 207 AEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFL 286 (597)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l 286 (597)
++..++++ +++.++.+.+.+.+..+++++.++++..+++++..++..+++ +..++
T Consensus 300 s~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~~~l 354 (488)
T TIGR02900 300 SEAMAKKN-------------------YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD------AGNFI 354 (488)
T ss_pred HHHHHcCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hHHHH
Confidence 99988776 788889999999999999999999999999999988874332 67889
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q 007589 287 MLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (597)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~ 366 (597)
++.++..++..+.....+++++.||++.+++..++..++|++++++++..+.+|+.|+++++++++.+..++.+++.+|.
T Consensus 355 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 355 RVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998755679999999999999999999998888764
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.55 E-value=1.4e-11 Score=134.69 Aligned_cols=202 Identities=16% Similarity=0.089 Sum_probs=167.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007589 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (597)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (597)
.+..|++++.+.|.+.+++...+...+|+.++|+ +|++++|.|+.+..+.+....++...+.....|..++. +++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~-- 278 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD-- 278 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC--
Confidence 3557999999999999999999999999999999 89999999999999887765444433334444444432 111
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHH
Q 007589 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (597)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (597)
+++.++.+.+.+.+...+++++++++.++++++..++.+++ ...+...++++++...+.
T Consensus 279 -----------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~ 337 (492)
T PRK10459 279 -----------------TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLR 337 (492)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHH
Confidence 57778888999999999999999999999999998776442 466889999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q 007589 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (597)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~ 366 (597)
.+.......+++.||++.+++.+++.++++++..+++. ..+|+.|+++++++++.+..++.++++.|+
T Consensus 338 ~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 338 SVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887766665 357999999999999999998888887554
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.53 E-value=2.5e-11 Score=119.95 Aligned_cols=246 Identities=16% Similarity=0.173 Sum_probs=179.6
Q ss_pred HHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCchhHHHH
Q 007589 160 LAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQL 238 (597)
Q Consensus 160 l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (597)
..+++-..+++| +|++++|.++...++..++..+...|+..... +.. +++ +++.+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~~~-~~~-------------------~~~~~ 57 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----RSA-ARD-------------------KQDIR 57 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhh-ccC-------------------HHHHH
Confidence 356777888999 99999999999999999988776666443332 211 111 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCChhHHHH
Q 007589 239 SSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLC 318 (597)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (597)
+.....+...++.+++..+ +...+..+++. ++ ...++....+..++..+....+..+++.+|.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (251)
T PF13440_consen 58 SLLRFSLLVSLLLAVILAI----LAILIAYFFGD-PE------LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALI 126 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHhCC-hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555555444444333322 22333334432 22 3345566677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHhHHHHHHHHHHHH
Q 007589 319 LGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMPPKMGALQFGDYVKSGGFLLGRTLAVLI 398 (597)
Q Consensus 319 ~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~~p~~~~~l~~~i 398 (597)
.++..++..++..++.+ .+.++.+..++..++..+..++.+...+++.+ .++ + ...++.+|.+.|.....+..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 201 (251)
T PF13440_consen 127 DIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKLR-LSF--K-FSWRRLLKYGLPFSLSSLLSWL 201 (251)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccccC-CCc--h-hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999888555444443 34488899999999999888777765543322 222 2 2333489999999999999999
Q ss_pred HHHHHHHHHhh-hChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 007589 399 TMTLGTSMAAR-QGSDAMAAHQICMQVWLAVS-LLTDALAASGQALIAS 445 (597)
Q Consensus 399 ~~~i~~~l~~~-~g~~~laa~~i~~~i~~l~~-~~~~~l~~a~~p~vs~ 445 (597)
...++..+++. +|++++|.|+.+.++...+. ++..++++...|.+++
T Consensus 202 ~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 202 LSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998 79999999999999999888 8899999999999886
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.43 E-value=1.8e-11 Score=130.78 Aligned_cols=201 Identities=13% Similarity=-0.003 Sum_probs=167.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhh
Q 007589 137 TQDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLT 215 (597)
Q Consensus 137 ~~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~ 215 (597)
+.+..|++++.+.|.++.++...+...+|+.++++ +|++++|.|+.+..+.+.+..+...++.++..|.+++. ++
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~- 285 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE- 285 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-
Confidence 45568999999999999999999999999999985 99999999999999988665556667888999998874 22
Q ss_pred hhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHH
Q 007589 216 KDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPA 295 (597)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~ 295 (597)
+++.++.+++.+.....++++.+++++++++++..++..++ .+.+..++.++.++.++
T Consensus 286 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l 343 (416)
T PRK15099 286 ------------------KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVL 343 (416)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888899999999887654 34477888888888887
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 007589 296 FVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNK 365 (597)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~ 365 (597)
...+..+...+.+.++++......+...+++++++++++. .+|..|+++++.+++.+..++......+
T Consensus 344 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 344 KVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666668888888888888888999999999884 4899999999999999999877765543
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.37 E-value=1.9e-10 Score=125.26 Aligned_cols=187 Identities=21% Similarity=0.235 Sum_probs=163.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007589 138 QDAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (597)
Q Consensus 138 ~~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (597)
.+..|++++.++|..++.+...+.+.+|+.++++ +|++++|.|+.+..+......+ ...+..+.-|.+++...+++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~-~~~l~~~l~P~~s~~~~~~~-- 285 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIV-ASALNRVLFPALSRAYAEGD-- 285 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHH-HHHHHHHHHHHHHHHHHcCc--
Confidence 4678999999999999999999999999999999 8999999999777776666644 44677888888888876665
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHH
Q 007589 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (597)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (597)
+++.++...+.+.+..+++++..+++.++++|+...+..++. ..+...++++++..++.
T Consensus 286 -----------------~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~~~~~ 344 (480)
T COG2244 286 -----------------RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALAGLFL 344 (480)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHHHHHH
Confidence 677788899999999999999999999999999987765542 23778889999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHH
Q 007589 297 VVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVS 351 (597)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is 351 (597)
.+.......+++.++.+..++...++.++|++++++++ +.+|..|+++++ .+
T Consensus 345 ~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 345 SLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 99999999999999999999999999999999999998 458899999999 44
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=6.2e-06 Score=84.26 Aligned_cols=414 Identities=13% Similarity=0.064 Sum_probs=232.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhh
Q 007589 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGR-LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTKD 217 (597)
Q Consensus 139 ~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~-lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~ 217 (597)
+......+.+.-.+..+++..+.+++-..++-| ++++.+|..++-..+..- +.-+.++.-=+.....
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~s------------TiLFlsREair~A~l~ 72 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQS------------TILFLSREAIRLAELR 72 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHH------------HHHHhhHHHHHHHhcc
Confidence 345566777778889999999999998888888 899888776554333222 2223333211111000
Q ss_pred hhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHH
Q 007589 218 LAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFV 297 (597)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~ 297 (597)
. +++.+ .+..+..+..+ ++..++.+..+.+..+--.+....+.. ...+.-..-..+...++..-.
T Consensus 73 ~--gs~~~------d~~te~~n~~w----lS~~L~~~i~~~~i~~wl~~~~s~d~i---~~~p~y~~~I~~~~~S~vvEL 137 (530)
T KOG2864|consen 73 I--GSEPA------DTWTEFINLLW----LSVPLQTAINVACIYFWLGFLSSSDEI---SYSPLYAFAIFIIGLSIVVEL 137 (530)
T ss_pred C--CCCCC------ccHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHhhccchh---hcCchHhHHHHHHHHHHHHHH
Confidence 0 00111 12444444444 444444443333322211111111100 011222222333334444444
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHH-HHHHHHHHhhc-CCChhhHHHHHHHHHHHHHH-HHHHHHhhcc--ccC--
Q 007589 298 VSLALQGIFRGFKDTKTPVLCLGIGNLLA-VFLFPILIYFC-QLGMPGAAISTVVSQYIVAV-TMIWFLNKKV--VLM-- 370 (597)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~-i~l~~lli~~~-~~Gv~Gaa~at~is~~~~~~-~~~~~l~~~~--~~~-- 370 (597)
+...+.-..|...+.+.-+...-+..++. +++..+++.+. ..++.--|+|.......-.+ ..+.|++.++ +..
T Consensus 138 lsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~ 217 (530)
T KOG2864|consen 138 LSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEP 217 (530)
T ss_pred hcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccc
Confidence 44444555566666666677777777776 33333333332 23333334444433332222 1223333332 000
Q ss_pred -------CCCcchh-----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh---hChhHHHHHHHHHHHHHHHHHH-HHH
Q 007589 371 -------PPKMGAL-----QFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR---QGSDAMAAHQICMQVWLAVSLL-TDA 434 (597)
Q Consensus 371 -------~~~~~~~-----~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~---~g~~~laa~~i~~~i~~l~~~~-~~~ 434 (597)
-|+.... --++.+|.........+...+...-+..+++. .+-++-|.|.+++|.-++..=+ ...
T Consensus 218 ~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~P 297 (530)
T KOG2864|consen 218 FSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRP 297 (530)
T ss_pred hhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhCh
Confidence 0111000 11345555555555666666666555555443 2456778888888887765443 456
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHH
Q 007589 435 LAASGQALIASYVSKGDFKTVREITN---FVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPI 511 (597)
Q Consensus 435 l~~a~~p~vs~~~g~~~~~~~~~~~~---~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~ 511 (597)
+-.......++...+++.|+.|+... ..++....+++.....-...++.+..++.++.-....+...++++++.+++
T Consensus 298 IEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~ 377 (530)
T KOG2864|consen 298 IEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPF 377 (530)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHH
Confidence 77777788888888877777766544 445555555544444444555666666655332222345789999999999
Q ss_pred HHHHHHHHHHHhhcCchHHHHH---HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 512 NALAFIFDGLHYGVSDFRYAAC---SMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (597)
Q Consensus 512 ~~~~~i~~~~l~~~g~~~~~~~---~~~~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~ 579 (597)
.++..+.++.+.+..+.+.... .+++.+++.....+++..++|..|..+|..+.+.++.......+++
T Consensus 378 lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 378 LAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887754 4455555666667777888999999999999999988877666544
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.84 E-value=2.3e-06 Score=93.21 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=149.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhh--h-ChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCh---
Q 007589 380 GDYVKSGGFLLGRTLAVLITMTLGTSMAAR--Q-GSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDF--- 452 (597)
Q Consensus 380 ~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~--~-g~~~laa~~i~~~i~~l~~~~-~~~l~~a~~p~vs~~~g~~~~--- 452 (597)
++.++.....+...+...+-+.-+..+++. + +.++-|.|++++|+.+++.=+ ...+=.+.....++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 578888888888889999999988888877 4 679999999999998875433 355767777777777665433
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 007589 453 ------KTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (597)
Q Consensus 453 ------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g 526 (597)
++..+.+...+++...+++.+...-...++.+..++.++.-....+...++.++...++.+++.+.+..+++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 34566677777777777776666666777777777755332223357889999999999999999999999999
Q ss_pred chHHHHH---HHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 527 DFRYAAC---SMMLVGAMSSTFLLYAPR-ATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (597)
Q Consensus 527 ~~~~~~~---~~~~~~l~~~~~~~~l~~-~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~ 579 (597)
+.+.... .+.+.+++.....+++.. .+|..|..+|..+.+.++.+..++.+++
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876644 222333333444455555 5999999999999999999888777654
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.83 E-value=1.9e-07 Score=100.21 Aligned_cols=201 Identities=10% Similarity=0.006 Sum_probs=178.1
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHH
Q 007589 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLA-VSLLTDALAASGQALIASYVSKGDFKT 454 (597)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l-~~~~~~~l~~a~~p~vs~~~g~~~~~~ 454 (597)
..+.|++.+++.|..+..+.......+...+++++|+.++|+.+++++..+. -+.+..++..+..|..++++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 4567889999999999999999999999999999999999999999988776 455568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHH
Q 007589 455 VREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACS 534 (597)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~ 534 (597)
......++..+....++|.+.+... .+++...+..|+++...+..+.+.+....+.+.....+...+++.+++....++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~-~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILN-SEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 9999999999988888888766554 489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007589 535 MMLVGAMSSTFLLYA--PRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (597)
Q Consensus 535 ~~~~~l~~~~~~~~l--~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 577 (597)
.....+..+++.+.+ ...+|..|+.++..+++.+.......+.
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi 227 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYA 227 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Confidence 988888777665544 4678999999999999988877666554
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.51 E-value=0.00021 Score=70.41 Aligned_cols=258 Identities=14% Similarity=0.075 Sum_probs=151.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh---hhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhh
Q 007589 139 DAKNELIVLTLPAIAGQVIDPLAQLMETAYVGRLGS---VELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLT 215 (597)
Q Consensus 139 ~~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~lG~---~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~ 215 (597)
...+.+.++-+|..++.++..+..-+-+..++|-.+ +.+|+++++..+.-.+..... .+-.+... +++.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~-~~~~igl~-----~V~s~- 80 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLS-MFHHIGLV-----FVNSK- 80 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhh-hhHHHHHH-----Hhcch-
Confidence 347889999999999999999988888888887333 238999999988777654322 12222232 32221
Q ss_pred hhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-chHHH-HhhcCCCCcccchHHHHHHHHHHHhhh
Q 007589 216 KDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSL-ASGPF-LNLMGVPSASAMHGPAKKFLMLRALGS 293 (597)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~i-~~~l~~~~~~~~~~~a~~~l~~~~~~~ 293 (597)
+++ ++.+.-....+++...+..++.+- +...+ ...++.+++ +.+.+...+.++.+--
T Consensus 81 ------------------rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~--va~~tr~a~l~L~llP 139 (345)
T PF07260_consen 81 ------------------RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPS--VAEKTRRAFLYLTLLP 139 (345)
T ss_pred ------------------hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHH
Confidence 121 111211122222221111111221 22223 356677766 8888999988888888
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhc---C----CChhhHHHHHHHHHHHHHHHHHHHHhhc
Q 007589 294 PAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFC---Q----LGMPGAAISTVVSQYIVAVTMIWFLNKK 366 (597)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~---~----~Gv~Gaa~at~is~~~~~~~~~~~l~~~ 366 (597)
++..+....+|++-=.+++......++...+..+++..+++... . .++.|...+..+=....++.+++.++.+
T Consensus 140 fl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~ 219 (345)
T PF07260_consen 140 FLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDI 219 (345)
T ss_pred HHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88899999999888667777666666665555555555555321 1 1222221111111111112222223332
Q ss_pred cccCC-C-CcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-hC-----hhHHHHHHHHHHH
Q 007589 367 VVLMP-P-KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAAR-QG-----SDAMAAHQICMQV 424 (597)
Q Consensus 367 ~~~~~-~-~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~-~g-----~~~laa~~i~~~i 424 (597)
.+... . +.+...+++++++.+|++.......+.--+.+.++++ +| ++++|...+.+..
T Consensus 220 ~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypv 285 (345)
T PF07260_consen 220 IPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPV 285 (345)
T ss_pred ccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCC
Confidence 22221 1 3344578999999999999999999999999999999 43 3555554444333
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.50 E-value=1.1e-05 Score=72.71 Aligned_cols=80 Identities=31% Similarity=0.486 Sum_probs=74.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 007589 286 LMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNK 365 (597)
Q Consensus 286 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~ 365 (597)
+++++++.++..+.......+++.||++.++...+++.++|++++++++ +.+|..|+++|+.+++.+..++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999999999997 56999999999999999999999999887
Q ss_pred cc
Q 007589 366 KV 367 (597)
Q Consensus 366 ~~ 367 (597)
+.
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 64
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.12 E-value=0.00057 Score=74.71 Aligned_cols=216 Identities=12% Similarity=0.116 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007589 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR--L-GSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (597)
Q Consensus 140 ~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~--l-G~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (597)
..+++++++.......+.-.+++=-|.+++.. + ..++.|.|++++.+-+++.-+.-.++--..-.+.++...+++..
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 35788999999999999999999999999999 4 55789999999999998887766676666666777766544322
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHH
Q 007589 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (597)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (597)
++ ++ +.+.++..+.+...+.+...+|+++..+....++.++.+++++.= ....+...+++.+..+|+.
T Consensus 331 ~~---------~~-~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~~l 398 (549)
T PF04506_consen 331 KK---------QP-QESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIPFL 398 (549)
T ss_pred hh---------cc-chhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHHHH
Confidence 11 11 122577788889999999999988888888888888888764432 2333577788888999999
Q ss_pred HHHHHHHHHHhhcCCChh---HHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 007589 297 VVSLALQGIFRGFKDTKT---PVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVV 368 (597)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~ 368 (597)
+++.+..++.++....+. .....++..++.+..+++|+.. ++|..|..+|+++...+-.+..++++++..+
T Consensus 399 a~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~ 472 (549)
T PF04506_consen 399 AINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFR 472 (549)
T ss_pred HHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988876544 3444555666777888888876 7999999999999999999999999877543
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.09 E-value=0.0013 Score=65.26 Aligned_cols=186 Identities=18% Similarity=0.229 Sum_probs=114.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 007589 383 VKSGGFLLGRTLAVLITMTLGTSMAAR-QGSDAMAAHQICMQVWLAVSLL-TDALAASGQALIASYVSKGDFKTVREITN 460 (597)
Q Consensus 383 lk~~~p~~~~~l~~~i~~~i~~~l~~~-~g~~~laa~~i~~~i~~l~~~~-~~~l~~a~~p~vs~~~g~~~~~~~~~~~~ 460 (597)
+|.........+...+...+...++++ +|+++.+.|+....+.++...+ ..|+.++..-.+++...+ .+..++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455666677777776666666666665 5999999999999999888877 577888887777776533 233334443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 007589 461 FVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGA 540 (597)
Q Consensus 461 ~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l 540 (597)
......++.++.......... .+. +++... ....+.....++..........+++.++.+..........+
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333333332222222222 333 332211 11222222225677888889999999998888777776655
Q ss_pred HHHHHHHHh-cCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007589 541 MSSTFLLYA-PRATGLPGVWAGLTLFMGLRTVAGFVRLLS 579 (597)
Q Consensus 541 ~~~~~~~~l-~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~ 579 (597)
......+.+ ....++.+..++..++.++..++..+..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322222 223448888889999888887777766643
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.87 E-value=0.0035 Score=61.52 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=103.4
Q ss_pred HHHhhhChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007589 405 SMAARQGSDAMAAHQICMQVWLAVSLLT-DALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGS 483 (597)
Q Consensus 405 ~l~~~~g~~~laa~~i~~~i~~l~~~~~-~~l~~a~~p~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 483 (597)
.+...+|+++.+.|+....+..+...+. .|+.+...- ..+++.++.++.....+....+..+...++......
T Consensus 10 ~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (251)
T PF13440_consen 10 LLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY- 83 (251)
T ss_pred HHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444569999999999999988877764 555444332 234666777777776666555555444443333322
Q ss_pred hhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH-HHHHHhcCCCChhHHHHHH
Q 007589 484 LAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSS-TFLLYAPRATGLPGVWAGL 562 (597)
Q Consensus 484 l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~-~~~~~l~~~~Gi~Gv~~a~ 562 (597)
.+ .+++ ...++.++++..++..+.......+++.+|.+..........+... ..........+..+..++.
T Consensus 84 ---~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (251)
T PF13440_consen 84 ---FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSILLAF 155 (251)
T ss_pred ---Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33 3332 2345566677778888899999999999999998887776655442 1222222234788888888
Q ss_pred HHHHHHHHHHHHHHH
Q 007589 563 TLFMGLRTVAGFVRL 577 (597)
Q Consensus 563 ~i~~~i~~~~~~~~l 577 (597)
.++.++..+..+...
T Consensus 156 ~~~~~~~~~~~~~~~ 170 (251)
T PF13440_consen 156 IISALLALLISFYLL 170 (251)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888887776655544
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.86 E-value=0.042 Score=55.53 Aligned_cols=340 Identities=11% Similarity=0.031 Sum_probs=179.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 007589 187 FNIVSKLFNIPLLSVATSFVAEDIAKNLTKDLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPF 266 (597)
Q Consensus 187 ~~~~~~~~~~gl~~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i 266 (597)
..++..++..|+....|.+++...=+++ .++....+.-.+.+....+..++.+.+
T Consensus 69 ~~ifS~IiTgg~q~iiTRfiSD~lF~k~-------------------~~kIlpsy~Gvi~lv~~~a~~ig~~vf------ 123 (467)
T COG4267 69 CFIFSQIITGGFQLIITRFISDCLFEKK-------------------QRKILPSYIGVILLVTLVAGVIGLIVF------ 123 (467)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------------HHHHhHhHHHHHHHHHHHHHHHHHHhh------
Confidence 3344445666777788888887654443 445444444444444333333332111
Q ss_pred HhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHH
Q 007589 267 LNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKTPVLCLGIGNLLAVFLFPILIYFCQLGMPGAAI 346 (597)
Q Consensus 267 ~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~ 346 (597)
....+. ...|=.............-....++-+.++.+...+.-.++.++.+++..++- +.++.|..+
T Consensus 124 --~~~~~~-------si~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL 191 (467)
T COG4267 124 --FVNNQY-------SIVYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLL 191 (467)
T ss_pred --hhcCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHH
Confidence 111111 11122222333445556666777899999999999999999999999888776 468999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-CCCCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh--ChhHHH------H
Q 007589 347 STVVSQYIVAVTMIWFLNKKVVL-MPPKMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQ--GSDAMA------A 417 (597)
Q Consensus 347 at~is~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~--g~~~la------a 417 (597)
+..+|..+..++...++.|..+. .+..++.... .+--..+++.-....+..++++.+.=.. |.+..+ -
T Consensus 192 ~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL~~---~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~l 268 (467)
T COG4267 192 TLDIGIFIILFLLNFYILRYFKSSRRIGFDFLLY---RRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPL 268 (467)
T ss_pred HHHHhHHHHHHHHHHHHHHhcccccccceehhhh---hhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchh
Confidence 99999999988888887654321 1222232221 1111123333344555666666543221 111111 1
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH----hcC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007589 418 HQICMQVWLAVSLLTD-----ALAASGQALIASY----VSK-------GDFKTVREITNFVLKIGVLTGVSLATILGLSF 481 (597)
Q Consensus 418 ~~i~~~i~~l~~~~~~-----~l~~a~~p~vs~~----~g~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 481 (597)
|-+..-...+...+.. .+-+..++.--+. -+. ++.++.....++.+.-.+-+-...++.+++++
T Consensus 269 YDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~ 348 (467)
T COG4267 269 YDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLA 348 (467)
T ss_pred hhHHHHHHHHHhcchhheeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111 1111112211111 111 22234444555555555666666777888888
Q ss_pred hhhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH---hcCCCChhHH
Q 007589 482 GSLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLY---APRATGLPGV 558 (597)
Q Consensus 482 ~~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~~---l~~~~Gi~Gv 558 (597)
+.+...|.-++ .-.++..+-.++.-+....+.+-.+..-..+-+..+.......+.+..+.++ +.+.|--.|.
T Consensus 349 ~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gf 424 (467)
T COG4267 349 DALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGVGF 424 (467)
T ss_pred HHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHH
Confidence 88888775433 3444555666666666666666666666666666666555444444444433 3344555566
Q ss_pred HHHHHHHHHHHH
Q 007589 559 WAGLTLFMGLRT 570 (597)
Q Consensus 559 ~~a~~i~~~i~~ 570 (597)
..|..+...+..
T Consensus 425 f~a~fl~vlv~~ 436 (467)
T COG4267 425 FLASFLYVLVAF 436 (467)
T ss_pred HHHHHHHHHHHH
Confidence 666665554443
No 43
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.80 E-value=0.00011 Score=65.92 Aligned_cols=80 Identities=5% Similarity=-0.007 Sum_probs=73.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007589 502 VLFVSASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAGFVRLLSKS 581 (597)
Q Consensus 502 l~i~~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l~~~~ 581 (597)
+++++++.++.++......++++.||++..++.+.+..+++.++++.+.+.+|..|++++..+++++...+..+..+++.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~ 81 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999888888875543
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.013 Score=60.64 Aligned_cols=212 Identities=14% Similarity=0.124 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 007589 140 AKNELIVLTLPAIAGQVIDPLAQLMETAYVGR---LGSVELASAGVSISIFNIVSKLFNIPLLSVATSFVAEDIAKNLTK 216 (597)
Q Consensus 140 ~~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~---lG~~~laa~~~a~~i~~~~~~~~~~gl~~~~~~~va~~~~~~~~~ 216 (597)
..+++.+...-..-..+.-.+.+=-|.+++.- +.-.+.|.|.+.+.+-.++..+.--++--..-.+.+|...+++.+
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 34566677666777777777777777887773 455567777777777777766555566666677778877666533
Q ss_pred hhhcccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHH
Q 007589 217 DLAAGLEGNGKPPNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAF 296 (597)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~ 296 (597)
| .+++..++...+.+...+|++++.....-+++.+.++|++.= ....+...+++.+..+|+.
T Consensus 317 ~----------------~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~lL~~YclYI~~l 378 (530)
T KOG2864|consen 317 N----------------VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSLLLSWYCLYIPFL 378 (530)
T ss_pred h----------------HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchHHHHHHHHHHHHH
Confidence 3 688888999999999999988888777778888888876643 2334557889999999999
Q ss_pred HHHHHHHHHHhhcCCChh---HHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 007589 297 VVSLALQGIFRGFKDTKT---PVLCLGIGNLLAVFLFPILIYFCQLGMPGAAISTVVSQYIVAVTMIWFLNKKVVLMP 371 (597)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~v~~i~l~~lli~~~~~Gv~Gaa~at~is~~~~~~~~~~~l~~~~~~~~ 371 (597)
+++.+..+++.+.+..+. .-+..++..++.++++++++.. +|..|..+|+++...+--+..+.++++..+...
T Consensus 379 AiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~ 454 (530)
T KOG2864|consen 379 AINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRDLS 454 (530)
T ss_pred HhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999988765432 2344455667778889999976 566999999999998888888888877654443
No 45
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.11 E-value=0.16 Score=50.62 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=104.8
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 007589 376 ALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQG---SDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (597)
Q Consensus 376 ~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g---~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~ 452 (597)
..++.+++++-.|+.++.++..+.-.+.+.-+++-. .+.+|+|+++..+.-++..+...+-+....+ ++++.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH-----hcchh
Confidence 346788999999999999999999999888887643 3568999999999888877777776655554 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhh-hhhcccCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 007589 453 KTVREITNFVLKIGVLTGVSLATI-----LGLSFG-SLAPLFTKDPKVLGIVGTGVLFVSASQPINALAFIFDGLHYGVS 526 (597)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~~~-----l~~~~~-~l~~lf~~d~~v~~~~~~~l~i~~~~~~~~~~~~i~~~~l~~~g 526 (597)
++- .. .....+.++..+.+ .--+.. -+..++.-++++.+.+...+.++.+.-+++++....+|++.=.+
T Consensus 82 srr--~~---vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r 156 (345)
T PF07260_consen 82 SRR--KA---VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHR 156 (345)
T ss_pred hhH--HH---HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 322 22 22222233333222 112222 23455667899999999999999999999999999999988555
Q ss_pred chHHHHHHHHH
Q 007589 527 DFRYAACSMML 537 (597)
Q Consensus 527 ~~~~~~~~~~~ 537 (597)
++......++.
T Consensus 157 ~s~iV~~aSI~ 167 (345)
T PF07260_consen 157 HSWIVGSASIA 167 (345)
T ss_pred ceeEeehHHHH
Confidence 55444444444
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=88.06 E-value=35 Score=35.25 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=88.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHH
Q 007589 427 AVSLL-TDALAASGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKDPKVLGIVGTGVLFV 505 (597)
Q Consensus 427 l~~~~-~~~l~~a~~p~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d~~v~~~~~~~l~i~ 505 (597)
+++++ ..+++....-.+|+.+=+++.+++.....-.+.+....+..++..++ +.+++ .....+ ...
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk--~l~ 137 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYK--ILA 137 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHH--HHH
Confidence 34444 45577777777888888888888887776666666655555553211 11222 222333 334
Q ss_pred HHhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHH
Q 007589 506 SASQPINALAFIFDGLHYGVSDFRYAACSMMLVGAMSSTFLLYAPRATGLPGVWAGLTLFMGLRTVAG 573 (597)
Q Consensus 506 ~~~~~~~~~~~i~~~~l~~~g~~~~~~~~~~~~~l~~~~~~~~l~~~~Gi~Gv~~a~~i~~~i~~~~~ 573 (597)
+...+..+...+....+.+++|.+....+..+.-++.+.+..++ .+.++.|.-++.-++..+.....
T Consensus 138 ~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~-~~~~ie~lLL~~~IGi~~i~~l~ 204 (467)
T COG4267 138 CALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLF-LKSPIEGLLLTLDIGIFIILFLL 204 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHH
Confidence 44556677778888889999999999888887777766655443 56799999999999986655443
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=61.17 E-value=1.8e+02 Score=30.57 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 007589 450 GDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLF 488 (597)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf 488 (597)
.+.++.+++.+++.+.+++......+++....-|+...-
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999988888877776633
No 48
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=47.10 E-value=4.3e+02 Score=29.12 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC--hhhhhhhhhHHHHHHHHH
Q 007589 149 LPAIAGQVIDPLAQLMETAYVGRLG--SVELASAGVSISIFNIVS 191 (597)
Q Consensus 149 ~p~~~~~~~~~l~~~vd~~~ig~lG--~~~laa~~~a~~i~~~~~ 191 (597)
.-..++++.+.+..+.-..++.++. +..++.+..+..++.++.
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Ll 61 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLL 61 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3445667777777776666666642 233555566666666544
No 49
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.31 E-value=3e+02 Score=25.98 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 007589 559 WAGLTLF 565 (597)
Q Consensus 559 ~~a~~i~ 565 (597)
|....++
T Consensus 181 ~~~iiig 187 (206)
T PF06570_consen 181 WVYIIIG 187 (206)
T ss_pred HHHHHHH
Confidence 3333333
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=36.21 E-value=1.4e+02 Score=23.59 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 007589 436 AASGQALIASYVSKGDFKTVREITNFVLKIGVLTGV 471 (597)
Q Consensus 436 ~~a~~p~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~ 471 (597)
+......+-..+.+||++++++..++..++..+-.+
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~ 72 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAII 72 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHH
Confidence 333444567788899999999999888887764444
No 51
>PTZ00370 STEVOR; Provisional
Probab=32.35 E-value=97 Score=30.76 Aligned_cols=20 Identities=5% Similarity=0.043 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCCceecccc
Q 007589 571 VAGFVRLLSKSGPWWFLHTD 590 (597)
Q Consensus 571 ~~~~~~l~~~~~~w~~~~~~ 590 (597)
++..|.+|+|++.|+++.++
T Consensus 273 ilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 273 ILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHHhhcchhHHHHHh
Confidence 34445555677789876554
No 52
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=31.99 E-value=5.8e+02 Score=26.21 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCChh
Q 007589 235 RKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSASAMHGPAKKFLMLRALGSPAFVVSLALQGIFRGFKDTKT 314 (597)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (597)
.+..+.+.+.+..-.+++...++.+-..-|.+...++..+ +..........+...+-......-+...-+..++.|.
T Consensus 6 ~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~---~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~ 82 (342)
T COG0798 6 KKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLE---FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKP 82 (342)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccce---eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchH
Confidence 3334455555555555555555555555555666665432 2333333333333444444555566777777888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007589 315 PVLCLGIGNLLAVFLFPILIY 335 (597)
Q Consensus 315 ~~~~~~~~~v~~i~l~~lli~ 335 (597)
-......+-++.-++.+.+..
T Consensus 83 L~lsL~~Nwii~P~lm~~la~ 103 (342)
T COG0798 83 LILSLFVNWIIGPLLMFALAW 103 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 655555555555444444443
No 53
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=31.37 E-value=6.6e+02 Score=26.69 Aligned_cols=82 Identities=10% Similarity=-0.050 Sum_probs=41.9
Q ss_pred CcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 007589 373 KMGALQFGDYVKSGGFLLGRTLAVLITMTLGTSMAARQGSDAMAAHQICMQVWLAVSLLTDALAASGQALIASYVSKGDF 452 (597)
Q Consensus 373 ~~~~~~~~~~lk~~~p~~~~~l~~~i~~~i~~~l~~~~g~~~laa~~i~~~i~~l~~~~~~~l~~a~~p~vs~~~g~~~~ 452 (597)
+.++++.++.++.++|..+.-+. .+...+.+...+.+.++++...-+.-.... +.+-+.
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~p~i-----il~~i~~g~~t~teaa~~~~~~~l~i~~~~----------------~~~~~~ 261 (416)
T PF06808_consen 203 RASLKERWRAFKRAIPALLIPVI-----ILGGIYLGIFTPTEAAAVAVVYALVIGLFV----------------YRRLSW 261 (416)
T ss_pred cchHHHHHHHHHhcchHHHHHHH-----HHHHhhhcccchhhhhhhhHHHHHHHHHhh----------------hcccCh
Confidence 34445556666666654433221 122233444566666766655443210000 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007589 453 KTVREITNFVLKIGVLTGVSLAT 475 (597)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~~~~~~ 475 (597)
++..+....+.+.+..+...++.
T Consensus 262 ~~l~~~l~~~~~~~~~i~~iia~ 284 (416)
T PF06808_consen 262 KDLWRALVETARTTGMILFIIAA 284 (416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766655544433
No 54
>PF13347 MFS_2: MFS/sugar transport protein
Probab=30.52 E-value=6.6e+02 Score=26.39 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=12.3
Q ss_pred HHHHhhcCchHHHHHHHHHHHH
Q 007589 519 DGLHYGVSDFRYAACSMMLVGA 540 (597)
Q Consensus 519 ~~~l~~~g~~~~~~~~~~~~~l 540 (597)
..+.+=.|+.+......++..+
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLAAL 302 (428)
T ss_pred HHHHHHccceeehhhhHHHHHH
Confidence 4555556776665555554443
No 55
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=28.03 E-value=4.6e+02 Score=23.75 Aligned_cols=54 Identities=9% Similarity=0.080 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 007589 438 SGQALIASYVSKGDFKTVREITNFVLKIGVLTGVSLATILGLSFGSLAPLFTKD 491 (597)
Q Consensus 438 a~~p~vs~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~lf~~d 491 (597)
...-.+.+.++.+++++.-......+.....+..|+...+..+.+.+.+.+..+
T Consensus 101 if~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~ 154 (183)
T PF01595_consen 101 IFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIE 154 (183)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334456788888999999999999999999999999999999999998888654
No 56
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=27.30 E-value=8.3e+02 Score=26.50 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007589 141 KNELIVLTLPAIAGQVIDPLAQLMETAYVGR 171 (597)
Q Consensus 141 ~~~l~~~a~p~~~~~~~~~l~~~vd~~~ig~ 171 (597)
.|+.+.++.+-+..++.....+.-=..+-..
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTd 41 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTD 41 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhc
Confidence 5677788887777777666665555555554
No 57
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.24 E-value=91 Score=30.87 Aligned_cols=18 Identities=6% Similarity=0.008 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCCceecc
Q 007589 571 VAGFVRLLSKSGPWWFLH 588 (597)
Q Consensus 571 ~~~~~~l~~~~~~w~~~~ 588 (597)
++..|.+|+|++.|+++.
T Consensus 277 iLYiWlyrrRK~swkhe~ 294 (295)
T TIGR01478 277 ILYIWLYRRRKKSWKHEC 294 (295)
T ss_pred HHHHHHHHhhcccccccc
Confidence 344455556777898753
No 58
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=24.66 E-value=8.2e+02 Score=25.60 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHh
Q 007589 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLN 268 (597)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~ 268 (597)
+++.+++.+.+...+.+...+..++.....-|+..
T Consensus 90 e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 90 ESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999998888888888778765
No 59
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.44 E-value=9.8e+02 Score=26.39 Aligned_cols=106 Identities=8% Similarity=0.099 Sum_probs=56.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHchH-HHHhhcCCCCcccchHH---------HHHHHHHHHhhhHHHHH
Q 007589 229 PNGTTERKQLSSVSTALLLAVGIGIFEAAALSLASG-PFLNLMGVPSASAMHGP---------AKKFLMLRALGSPAFVV 298 (597)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~-~i~~~l~~~~~~~~~~~---------a~~~l~~~~~~~~~~~~ 298 (597)
|.++..+.+.+-+-.++.++.++|....+.+....+ .+-..+..+...++.+. +.-..-..+...++.+.
T Consensus 277 E~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi 356 (550)
T KOG1289|consen 277 ETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGI 356 (550)
T ss_pred HhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhH
Confidence 446666777777777888888888887777766666 44444432211111111 11112223333444433
Q ss_pred HHHH--HHHHhh----------------cCCChhHHHHHHHHHHHHHHHHHHHH
Q 007589 299 SLAL--QGIFRG----------------FKDTKTPVLCLGIGNLLAVFLFPILI 334 (597)
Q Consensus 299 ~~~~--~~~l~~----------------~~~~~~~~~~~~~~~v~~i~l~~lli 334 (597)
.... .....+ ..+++.|..+..+..++.+++..+..
T Consensus 357 ~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L 410 (550)
T KOG1289|consen 357 SSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLIL 410 (550)
T ss_pred HHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 3222 111111 22458888888888887776655443
No 60
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=22.59 E-value=5.9e+02 Score=26.63 Aligned_cols=42 Identities=17% Similarity=0.058 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCc
Q 007589 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASGPFLNLMGVPSA 275 (597)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~ 275 (597)
.++.....+..+.....+..++..++-.+..-+++++|.+.+
T Consensus 117 perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~ 158 (423)
T COG4536 117 PERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLD 158 (423)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 555555555555556666666666666777888888887765
No 61
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=22.38 E-value=5.4e+02 Score=22.67 Aligned_cols=20 Identities=25% Similarity=0.086 Sum_probs=9.7
Q ss_pred hHHHHHHHhHHHHHHHHHHH
Q 007589 378 QFGDYVKSGGFLLGRTLAVL 397 (597)
Q Consensus 378 ~~~~~lk~~~p~~~~~l~~~ 397 (597)
+.++-+|.+.-.+...+...
T Consensus 102 ~~~~A~~~~~ga~~g~~~g~ 121 (140)
T PF04306_consen 102 DFRRALRAGIGALVGFLAGT 121 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444433
No 62
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.80 E-value=4.5e+02 Score=21.46 Aligned_cols=51 Identities=10% Similarity=-0.037 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 007589 315 PVLCLGIGNLLAVFLFPILIYFC-QLGMPGAAISTVVSQYIVAVTMIWFLNK 365 (597)
Q Consensus 315 ~~~~~~~~~v~~i~l~~lli~~~-~~Gv~Gaa~at~is~~~~~~~~~~~l~~ 365 (597)
.-|+++++.++.+++..+..+.. +..+...+|+-.++-+...-+.=.+.+|
T Consensus 33 ~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r 84 (93)
T PF06946_consen 33 NKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNR 84 (93)
T ss_pred cchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhh
Confidence 34556666666666655555444 3446666666655555555544444444
No 63
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.90 E-value=1.4e+02 Score=25.80 Aligned_cols=27 Identities=4% Similarity=0.128 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 007589 341 MPGAAISTVVSQYIVAVTMIWFLNKKV 367 (597)
Q Consensus 341 v~Gaa~at~is~~~~~~~~~~~l~~~~ 367 (597)
+.|+.+|.+++.+...++.+|.++|++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444443344444455443
Done!