Query 007589
Match_columns 597
No_of_seqs 295 out of 1674
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 05:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007589.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007589hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 34.3 1.6E+02 0.012 26.5 35.4 28 550-577 404-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 26.3 2.1E+02 0.016 25.5 18.4 26 338-363 406-431 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 6.0 7E+02 0.051 20.8 34.1 27 551-577 374-400 (417)
4 d1lghb_ f.3.1.1 (B:) Light-har 5.6 2.8E+02 0.02 16.6 3.1 31 234-264 11-41 (43)
5 d1nkzb_ f.3.1.1 (B:) Light-har 5.6 3E+02 0.022 16.0 4.5 34 451-484 7-40 (41)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 4.9 1.2E+02 0.0086 16.5 0.9 6 553-558 23-28 (33)
7 d1xmeb2 f.17.2.1 (B:3-36) Bact 3.7 3.7E+02 0.027 14.3 3.1 14 558-571 15-28 (34)
8 d2yvxa3 f.57.1.1 (A:276-448) M 3.3 9.4E+02 0.069 18.6 8.2 14 201-214 58-71 (173)
9 d2r6gf2 f.58.1.1 (F:261-504) M 3.3 1E+03 0.073 18.9 12.4 23 378-400 150-172 (244)
10 d2fd6u3 g.7.1.3 (U:92-188) Uro 2.9 2E+02 0.014 20.1 0.9 20 30-49 16-35 (97)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=34.27 E-value=1.6e+02 Score=26.50 Aligned_cols=28 Identities=14% Similarity=-0.065 Sum_probs=15.7
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007589 550 PRATGLPGVWAGLTLFMGLRTVAGFVRL 577 (597)
Q Consensus 550 ~~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 577 (597)
...+|..+..+......++..++.+...
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557777766655555555555444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.32 E-value=2.1e+02 Score=25.49 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=12.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH
Q 007589 338 QLGMPGAAISTVVSQYIVAVTMIWFL 363 (597)
Q Consensus 338 ~~Gv~Gaa~at~is~~~~~~~~~~~l 363 (597)
..|..+..+.......+..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555544444444444444443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.98 E-value=7e+02 Score=20.76 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=13.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007589 551 RATGLPGVWAGLTLFMGLRTVAGFVRL 577 (597)
Q Consensus 551 ~~~Gi~Gv~~a~~i~~~i~~~~~~~~l 577 (597)
..+|....++...+..++..++.++.+
T Consensus 374 ~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 374 ESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446766665554444444444444443
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.63 E-value=2.8e+02 Score=16.58 Aligned_cols=31 Identities=3% Similarity=-0.119 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Q 007589 234 ERKQLSSVSTALLLAVGIGIFEAAALSLASG 264 (597)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 264 (597)
.++...++.+++.+-..+.+++=++.+...|
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4666777777777777777776666665444
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.57 E-value=3e+02 Score=16.01 Aligned_cols=34 Identities=3% Similarity=-0.229 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007589 451 DFKTVREITNFVLKIGVLTGVSLATILGLSFGSL 484 (597)
Q Consensus 451 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 484 (597)
+.++..+.+..+.++...+++..=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3467888888999998888887777766666554
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.95 E-value=1.2e+02 Score=16.50 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.5
Q ss_pred CChhHH
Q 007589 553 TGLPGV 558 (597)
Q Consensus 553 ~Gi~Gv 558 (597)
+|+..+
T Consensus 23 ~gv~av 28 (33)
T d1xmec1 23 LGVYAV 28 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 7
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=3.65 E-value=3.7e+02 Score=14.34 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 007589 558 VWAGLTLFMGLRTV 571 (597)
Q Consensus 558 v~~a~~i~~~i~~~ 571 (597)
-|+++.+++++.++
T Consensus 15 gwlafslamlfvfi 28 (34)
T d1xmeb2 15 GWLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35555555554443
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.30 E-value=9.4e+02 Score=18.57 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhh
Q 007589 201 VATSFVAEDIAKNL 214 (597)
Q Consensus 201 ~~~~~va~~~~~~~ 214 (597)
-..+.+-|..+.++
T Consensus 58 Qs~ti~iR~La~g~ 71 (173)
T d2yvxa3 58 QSATLIIRALATRD 71 (173)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccc
Confidence 34456666666554
No 9
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.30 E-value=1e+03 Score=18.92 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=14.8
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHH
Q 007589 378 QFGDYVKSGGFLLGRTLAVLITM 400 (597)
Q Consensus 378 ~~~~~lk~~~p~~~~~l~~~i~~ 400 (597)
.++.+.+.-+|.....+......
T Consensus 150 ~~~~f~~I~lPl~~p~i~~~~il 172 (244)
T d2r6gf2 150 PFQNFFKITLPLLIKPLTPLMIA 172 (244)
T ss_dssp SHHHHHHTTGGGTHHHHHHHHHH
T ss_pred ccCCeEEEEccccHHHHHHHHHH
Confidence 56777888888766655544433
No 10
>d2fd6u3 g.7.1.3 (U:92-188) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.90 E-value=2e+02 Score=20.06 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.1
Q ss_pred cCceeeeecccccccchhhh
Q 007589 30 NASRFSLQQSRIGDGCAAFD 49 (597)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~ 49 (597)
.|+.-+||+.+++++|-+..
T Consensus 16 RGr~qsLQCr~p~eqClevV 35 (97)
T d2fd6u3 16 RGRHQSLQCRSPEEQCLDVV 35 (97)
T ss_dssp TTCCEEEECSSTTCEEEEEE
T ss_pred hchhhccccCCchhhHhHHh
Confidence 47888999999999999844
Done!