Query 007591
Match_columns 597
No_of_seqs 537 out of 3273
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 12:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 2.3E-66 5E-71 572.8 33.7 388 181-597 23-412 (596)
2 KOG0731 AAA+-type ATPase conta 100.0 1.1E-61 2.3E-66 543.5 37.6 273 324-597 303-575 (774)
3 KOG0734 AAA+-type ATPase conta 100.0 7E-63 1.5E-67 525.9 26.6 269 323-597 295-563 (752)
4 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-58 4E-63 504.8 30.1 328 241-580 321-679 (693)
5 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-58 4E-63 476.4 26.9 255 323-580 142-397 (406)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 6.1E-58 1.3E-62 494.4 31.3 360 220-583 307-777 (802)
7 CHL00176 ftsH cell division pr 100.0 9.2E-52 2E-56 466.9 36.9 394 179-597 48-444 (638)
8 PRK10733 hflB ATP-dependent me 100.0 1.6E-47 3.4E-52 435.4 41.8 384 182-597 31-414 (644)
9 KOG0736 Peroxisome assembly fa 100.0 3.7E-46 8.1E-51 411.4 26.5 251 324-579 664-936 (953)
10 TIGR01241 FtsH_fam ATP-depende 100.0 1.8E-45 3.9E-50 407.8 31.7 273 322-597 45-317 (495)
11 KOG0729 26S proteasome regulat 100.0 4.9E-46 1.1E-50 370.7 19.1 258 323-583 168-426 (435)
12 KOG0727 26S proteasome regulat 100.0 5.1E-45 1.1E-49 361.2 23.4 251 323-576 146-397 (408)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 7.2E-45 1.6E-49 393.3 22.5 226 327-558 185-414 (802)
14 KOG0728 26S proteasome regulat 100.0 2E-44 4.4E-49 356.6 21.0 252 324-578 139-391 (404)
15 KOG0652 26S proteasome regulat 100.0 2E-44 4.4E-49 358.3 20.3 253 323-578 162-415 (424)
16 KOG0738 AAA+-type ATPase [Post 100.0 1.6E-43 3.6E-48 367.5 22.3 249 324-580 204-474 (491)
17 TIGR01243 CDC48 AAA family ATP 100.0 6.8E-43 1.5E-47 403.6 29.4 335 242-581 316-716 (733)
18 KOG0726 26S proteasome regulat 100.0 3.8E-44 8.2E-49 360.7 16.3 253 324-579 177-430 (440)
19 COG1223 Predicted ATPase (AAA+ 100.0 3.1E-43 6.8E-48 349.8 21.6 242 324-575 113-355 (368)
20 PTZ00454 26S protease regulato 100.0 6.2E-42 1.3E-46 369.1 29.0 252 324-578 137-389 (398)
21 COG0464 SpoVK ATPases of the A 100.0 4.8E-42 1E-46 380.0 28.7 299 274-578 181-486 (494)
22 PRK03992 proteasome-activating 100.0 8.1E-41 1.8E-45 360.3 28.5 256 324-582 123-379 (389)
23 CHL00206 ycf2 Ycf2; Provisiona 100.0 9.3E-41 2E-45 396.1 24.0 230 355-597 1620-1896(2281)
24 PTZ00361 26 proteosome regulat 100.0 3.2E-40 6.9E-45 358.6 25.1 252 324-578 175-427 (438)
25 KOG0735 AAA+-type ATPase [Post 100.0 3E-40 6.5E-45 361.9 24.0 280 273-558 604-888 (952)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 2.7E-38 5.8E-43 348.0 26.4 244 327-578 223-466 (489)
27 KOG0739 AAA+-type ATPase [Post 100.0 1.1E-39 2.3E-44 329.5 13.1 229 322-558 123-353 (439)
28 TIGR01242 26Sp45 26S proteasom 100.0 7.1E-38 1.5E-42 334.5 27.5 249 324-575 114-363 (364)
29 KOG0737 AAA+-type ATPase [Post 100.0 4.1E-38 8.8E-43 327.2 22.1 250 323-580 83-364 (386)
30 KOG0651 26S proteasome regulat 100.0 1.1E-38 2.4E-43 324.0 13.4 249 325-576 125-374 (388)
31 TIGR03689 pup_AAA proteasome A 100.0 1.8E-35 3.9E-40 325.8 26.3 257 322-582 172-485 (512)
32 KOG0741 AAA+-type ATPase [Post 100.0 5.8E-34 1.3E-38 304.7 15.4 252 326-579 213-494 (744)
33 KOG0730 AAA+-type ATPase [Post 100.0 4.7E-33 1E-37 305.6 21.2 238 327-578 180-419 (693)
34 KOG0732 AAA+-type ATPase conta 100.0 3.3E-33 7.2E-38 321.3 19.4 251 326-581 259-531 (1080)
35 TIGR01243 CDC48 AAA family ATP 100.0 2.8E-32 6.1E-37 315.4 25.8 247 326-578 172-438 (733)
36 KOG0740 AAA+-type ATPase [Post 100.0 8.5E-32 1.8E-36 288.2 16.9 248 324-579 145-408 (428)
37 PLN00020 ribulose bisphosphate 100.0 3.7E-31 8.1E-36 277.8 19.8 214 328-552 111-348 (413)
38 CHL00181 cbbX CbbX; Provisiona 99.9 2.3E-22 4.9E-27 208.9 21.9 212 332-557 23-256 (287)
39 TIGR02881 spore_V_K stage V sp 99.9 2.2E-22 4.8E-27 205.8 20.9 213 330-557 4-240 (261)
40 KOG0742 AAA+-type ATPase [Post 99.9 3.9E-22 8.5E-27 209.1 20.1 242 327-580 350-617 (630)
41 TIGR02880 cbbX_cfxQ probable R 99.9 4.4E-22 9.6E-27 206.5 18.5 211 333-557 23-255 (284)
42 PF00004 AAA: ATPase family as 99.9 1E-21 2.2E-26 177.2 14.1 130 368-502 1-132 (132)
43 KOG0743 AAA+-type ATPase [Post 99.9 5.7E-21 1.2E-25 204.2 17.7 207 329-547 198-412 (457)
44 PRK00080 ruvB Holliday junctio 99.9 3.6E-20 7.7E-25 195.5 21.7 231 326-594 19-265 (328)
45 TIGR00635 ruvB Holliday juncti 99.9 6.2E-20 1.3E-24 190.9 22.4 211 330-574 2-228 (305)
46 PF05496 RuvB_N: Holliday junc 99.8 2.2E-20 4.7E-25 185.8 15.1 196 324-553 16-227 (233)
47 KOG0744 AAA+-type ATPase [Post 99.8 3.1E-20 6.8E-25 190.6 13.1 241 331-575 141-414 (423)
48 COG2256 MGS1 ATPase related to 99.8 1.2E-18 2.5E-23 184.1 18.3 208 325-577 17-240 (436)
49 KOG0735 AAA+-type ATPase [Post 99.8 1.2E-18 2.6E-23 192.7 18.8 233 332-577 408-650 (952)
50 COG2255 RuvB Holliday junction 99.8 1.6E-18 3.5E-23 175.9 17.9 217 326-576 20-252 (332)
51 TIGR02639 ClpA ATP-dependent C 99.8 3E-18 6.4E-23 198.8 19.7 224 327-576 177-430 (731)
52 TIGR02902 spore_lonB ATP-depen 99.8 1.8E-18 3.9E-23 193.8 17.2 218 322-575 55-332 (531)
53 COG0464 SpoVK ATPases of the A 99.8 6.5E-18 1.4E-22 187.7 21.4 219 351-577 4-228 (494)
54 KOG0736 Peroxisome assembly fa 99.8 4.9E-18 1.1E-22 189.5 18.6 206 362-576 428-654 (953)
55 PRK00149 dnaA chromosomal repl 99.8 1.6E-17 3.5E-22 182.7 18.9 225 326-576 116-350 (450)
56 PRK14956 DNA polymerase III su 99.8 3.8E-17 8.3E-22 179.0 21.0 205 324-571 10-242 (484)
57 PRK14962 DNA polymerase III su 99.8 3.9E-17 8.5E-22 180.3 21.0 206 325-573 7-240 (472)
58 TIGR00763 lon ATP-dependent pr 99.8 1E-17 2.2E-22 195.4 17.0 164 332-516 320-505 (775)
59 TIGR00362 DnaA chromosomal rep 99.7 5.1E-17 1.1E-21 176.3 19.9 223 326-576 104-338 (405)
60 PRK04195 replication factor C 99.7 6.6E-17 1.4E-21 179.3 20.8 208 326-572 8-222 (482)
61 PRK11034 clpA ATP-dependent Cl 99.7 5.9E-17 1.3E-21 187.3 20.6 224 329-578 183-436 (758)
62 TIGR02928 orc1/cdc6 family rep 99.7 2.9E-16 6.3E-21 167.1 24.2 243 328-594 11-294 (365)
63 PRK00411 cdc6 cell division co 99.7 4.4E-16 9.5E-21 167.5 25.1 244 328-594 26-302 (394)
64 PRK14961 DNA polymerase III su 99.7 1.8E-16 3.8E-21 170.0 21.6 212 325-573 9-242 (363)
65 PRK13342 recombination factor 99.7 1.2E-16 2.6E-21 174.0 19.9 202 327-576 7-220 (413)
66 PRK14960 DNA polymerase III su 99.7 1.9E-16 4.2E-21 178.0 20.5 203 326-571 9-239 (702)
67 PRK12323 DNA polymerase III su 99.7 8E-17 1.7E-21 180.7 17.1 196 325-553 9-231 (700)
68 PRK06645 DNA polymerase III su 99.7 2.8E-16 6E-21 174.6 21.2 215 324-572 13-253 (507)
69 PRK07003 DNA polymerase III su 99.7 1.2E-16 2.6E-21 181.2 18.3 191 325-554 9-227 (830)
70 PRK06893 DNA replication initi 99.7 3.8E-16 8.2E-21 157.2 19.9 212 326-572 10-227 (229)
71 PRK14088 dnaA chromosomal repl 99.7 1.4E-16 3E-21 174.9 17.7 225 326-577 99-334 (440)
72 PRK14958 DNA polymerase III su 99.7 2.4E-16 5.2E-21 175.6 19.7 205 325-572 9-241 (509)
73 PRK14964 DNA polymerase III su 99.7 5.3E-16 1.1E-20 171.3 20.0 202 327-571 8-237 (491)
74 PRK07994 DNA polymerase III su 99.7 5.3E-16 1.2E-20 175.9 20.3 203 326-571 10-240 (647)
75 TIGR03420 DnaA_homol_Hda DnaA 99.7 4.3E-16 9.2E-21 154.7 17.3 206 327-572 10-225 (226)
76 PRK14086 dnaA chromosomal repl 99.7 5.9E-16 1.3E-20 173.8 20.0 226 326-577 282-517 (617)
77 PRK14949 DNA polymerase III su 99.7 8.1E-16 1.8E-20 177.4 21.4 195 325-552 9-225 (944)
78 PRK12402 replication factor C 99.7 1.4E-15 2.9E-20 159.7 21.4 209 326-573 9-247 (337)
79 PRK14963 DNA polymerase III su 99.7 9.3E-16 2E-20 170.7 21.1 204 325-572 7-237 (504)
80 PLN03025 replication factor C 99.7 6.1E-16 1.3E-20 162.9 18.2 201 325-570 6-218 (319)
81 PRK08691 DNA polymerase III su 99.7 6.9E-16 1.5E-20 174.8 19.6 211 325-572 9-241 (709)
82 PRK12422 chromosomal replicati 99.7 7.7E-16 1.7E-20 169.0 19.5 231 326-577 105-345 (445)
83 TIGR03345 VI_ClpV1 type VI sec 99.7 5.2E-16 1.1E-20 182.2 18.7 219 327-572 182-428 (852)
84 PRK05563 DNA polymerase III su 99.7 1.5E-15 3.3E-20 171.1 21.5 203 325-570 9-239 (559)
85 TIGR02397 dnaX_nterm DNA polym 99.7 1.2E-15 2.6E-20 161.6 19.2 205 325-572 7-239 (355)
86 PRK08903 DnaA regulatory inact 99.7 1.6E-15 3.4E-20 151.6 18.5 202 327-573 13-224 (227)
87 PRK14951 DNA polymerase III su 99.7 1.9E-15 4E-20 171.1 21.0 210 326-572 10-246 (618)
88 PRK13341 recombination factor 99.7 8.9E-16 1.9E-20 176.9 18.5 209 324-575 20-247 (725)
89 PRK08084 DNA replication initi 99.7 3.6E-15 7.7E-20 150.8 20.7 206 327-572 17-233 (235)
90 PRK14969 DNA polymerase III su 99.7 2.4E-15 5.1E-20 168.5 19.5 210 326-572 10-241 (527)
91 PRK14957 DNA polymerase III su 99.7 5.3E-15 1.2E-19 165.4 21.0 204 326-572 10-241 (546)
92 PRK14959 DNA polymerase III su 99.7 3.8E-15 8.2E-20 167.9 19.4 205 325-572 9-241 (624)
93 PRK14970 DNA polymerase III su 99.6 5.4E-15 1.2E-19 158.3 19.5 211 325-572 10-230 (367)
94 PHA02544 44 clamp loader, smal 99.6 7.9E-15 1.7E-19 153.3 20.0 205 324-569 13-225 (316)
95 PRK07764 DNA polymerase III su 99.6 4.4E-15 9.4E-20 173.1 19.7 208 325-568 8-239 (824)
96 PRK14952 DNA polymerase III su 99.6 6E-15 1.3E-19 166.3 20.1 211 325-571 6-240 (584)
97 PTZ00112 origin recognition co 99.6 8.9E-15 1.9E-19 166.9 21.3 237 331-594 754-1026(1164)
98 PRK14087 dnaA chromosomal repl 99.6 7.2E-15 1.6E-19 161.8 19.8 222 328-575 111-348 (450)
99 KOG2028 ATPase related to the 99.6 5.2E-15 1.1E-19 154.3 17.4 211 324-576 130-369 (554)
100 PRK07133 DNA polymerase III su 99.6 9.3E-15 2E-19 166.9 21.2 211 324-571 10-239 (725)
101 PRK08727 hypothetical protein; 99.6 8.7E-15 1.9E-19 147.8 18.6 209 327-574 14-230 (233)
102 PRK14965 DNA polymerase III su 99.6 6.1E-15 1.3E-19 166.8 19.2 203 326-571 10-240 (576)
103 CHL00095 clpC Clp protease ATP 99.6 3.2E-15 7E-20 175.5 17.5 203 328-557 175-403 (821)
104 PRK14953 DNA polymerase III su 99.6 1.4E-14 3E-19 160.8 21.0 211 325-572 9-241 (486)
105 PRK10865 protein disaggregatio 99.6 6.3E-15 1.4E-19 173.4 19.4 201 327-554 173-400 (857)
106 KOG2004 Mitochondrial ATP-depe 99.6 2.5E-15 5.5E-20 167.1 15.0 165 332-517 411-597 (906)
107 PRK14955 DNA polymerase III su 99.6 5.7E-15 1.2E-19 160.2 17.5 216 324-572 8-254 (397)
108 PF00308 Bac_DnaA: Bacterial d 99.6 6.6E-15 1.4E-19 147.4 16.5 203 327-555 3-216 (219)
109 PRK08451 DNA polymerase III su 99.6 1.9E-14 4.1E-19 160.4 21.2 204 325-571 7-238 (535)
110 PRK05896 DNA polymerase III su 99.6 7.7E-15 1.7E-19 164.7 18.2 203 325-570 9-239 (605)
111 PRK05642 DNA replication initi 99.6 2.5E-14 5.4E-19 144.6 20.0 180 365-572 45-232 (234)
112 PRK06647 DNA polymerase III su 99.6 1.8E-14 4E-19 162.2 20.8 209 326-571 10-240 (563)
113 TIGR03346 chaperone_ClpB ATP-d 99.6 1.3E-14 2.8E-19 171.1 20.3 203 327-556 168-397 (852)
114 PRK09111 DNA polymerase III su 99.6 2.5E-14 5.4E-19 162.0 21.2 212 324-572 16-254 (598)
115 PRK00440 rfc replication facto 99.6 4E-14 8.6E-19 147.4 20.5 203 326-573 11-224 (319)
116 PRK06305 DNA polymerase III su 99.6 2.7E-14 5.9E-19 157.2 20.2 205 325-572 10-243 (451)
117 COG1224 TIP49 DNA helicase TIP 99.6 1.8E-14 3.8E-19 150.3 17.4 101 472-576 321-433 (450)
118 PRK06620 hypothetical protein; 99.6 1.9E-14 4.1E-19 143.7 16.7 199 326-572 10-213 (214)
119 PRK05342 clpX ATP-dependent pr 99.6 1.9E-14 4.1E-19 156.6 17.7 224 330-557 68-380 (412)
120 COG0466 Lon ATP-dependent Lon 99.6 5E-15 1.1E-19 165.5 13.1 220 332-574 323-583 (782)
121 PRK10787 DNA-binding ATP-depen 99.6 1.3E-14 2.8E-19 168.9 17.0 219 332-573 322-580 (784)
122 PRK14954 DNA polymerase III su 99.6 4.7E-14 1E-18 160.1 21.1 214 326-572 10-254 (620)
123 PRK07940 DNA polymerase III su 99.6 2.3E-14 5E-19 155.1 17.3 182 330-544 3-211 (394)
124 PRK14948 DNA polymerase III su 99.6 5.7E-14 1.2E-18 159.8 21.3 196 325-553 9-228 (620)
125 KOG0989 Replication factor C, 99.6 1.2E-14 2.6E-19 149.2 14.0 194 323-553 27-236 (346)
126 COG0593 DnaA ATPase involved i 99.6 6.1E-14 1.3E-18 151.1 19.7 229 325-580 80-318 (408)
127 PRK14950 DNA polymerase III su 99.6 8.5E-14 1.8E-18 158.0 20.5 211 324-571 8-241 (585)
128 PF05673 DUF815: Protein of un 99.6 1.5E-13 3.2E-18 138.7 17.9 195 325-550 20-244 (249)
129 COG1474 CDC6 Cdc6-related prot 99.5 3.8E-13 8.2E-18 144.4 21.3 239 329-593 14-284 (366)
130 TIGR02903 spore_lon_C ATP-depe 99.5 2.5E-13 5.5E-18 154.8 21.0 217 326-575 148-430 (615)
131 COG2812 DnaX DNA polymerase II 99.5 1E-13 2.2E-18 153.2 16.6 197 326-555 10-228 (515)
132 PRK13407 bchI magnesium chelat 99.5 8.5E-14 1.8E-18 147.6 14.7 219 327-576 3-307 (334)
133 TIGR00382 clpX endopeptidase C 99.5 1.7E-13 3.7E-18 148.8 16.5 220 334-557 79-386 (413)
134 TIGR00390 hslU ATP-dependent p 99.5 1.7E-13 3.7E-18 147.7 16.4 238 333-576 13-431 (441)
135 TIGR02640 gas_vesic_GvpN gas v 99.5 3.5E-13 7.6E-18 138.4 17.8 185 366-578 22-260 (262)
136 PRK14971 DNA polymerase III su 99.5 5.6E-13 1.2E-17 151.7 20.9 202 327-571 12-242 (614)
137 PRK09087 hypothetical protein; 99.5 1.6E-13 3.4E-18 138.2 14.3 203 326-575 15-222 (226)
138 PRK05201 hslU ATP-dependent pr 99.5 2.3E-13 5.1E-18 146.8 16.0 238 333-576 16-433 (443)
139 PRK11034 clpA ATP-dependent Cl 99.5 4.3E-13 9.2E-18 155.5 18.6 199 333-552 459-712 (758)
140 TIGR02639 ClpA ATP-dependent C 99.5 8.9E-13 1.9E-17 153.3 18.3 197 333-554 455-710 (731)
141 CHL00081 chlI Mg-protoporyphyr 99.5 9.9E-13 2.1E-17 140.0 16.3 221 327-578 12-325 (350)
142 TIGR02030 BchI-ChlI magnesium 99.5 1.2E-12 2.5E-17 139.2 16.1 216 330-577 2-311 (337)
143 TIGR02442 Cob-chelat-sub cobal 99.4 1.8E-12 4E-17 148.4 16.7 216 330-578 2-307 (633)
144 cd00009 AAA The AAA+ (ATPases 99.4 3.7E-12 8.1E-17 114.5 14.6 121 364-501 18-150 (151)
145 KOG0741 AAA+-type ATPase [Post 99.4 2.3E-12 5E-17 139.8 12.8 155 347-514 526-684 (744)
146 PF06068 TIP49: TIP49 C-termin 99.4 6.2E-12 1.3E-16 133.1 15.5 68 329-403 21-90 (398)
147 PF05621 TniB: Bacterial TniB 99.4 1.5E-11 3.3E-16 127.7 18.0 219 332-570 34-284 (302)
148 TIGR03345 VI_ClpV1 type VI sec 99.4 1.7E-11 3.8E-16 144.3 18.4 195 333-553 567-828 (852)
149 PRK09112 DNA polymerase III su 99.4 2.4E-11 5.2E-16 130.0 17.9 189 327-550 18-243 (351)
150 TIGR01650 PD_CobS cobaltochela 99.3 1.3E-11 2.9E-16 129.9 15.3 137 365-516 64-233 (327)
151 KOG1942 DNA helicase, TBP-inte 99.3 2.8E-11 6E-16 123.8 17.0 130 425-576 297-439 (456)
152 TIGR03346 chaperone_ClpB ATP-d 99.3 2.4E-11 5.2E-16 143.6 19.1 203 332-555 565-825 (852)
153 TIGR00368 Mg chelatase-related 99.3 4.2E-11 9.1E-16 133.4 18.6 212 328-573 188-497 (499)
154 TIGR02329 propionate_PrpR prop 99.3 7.9E-12 1.7E-16 140.0 12.8 213 328-572 208-467 (526)
155 COG3829 RocR Transcriptional r 99.3 4.6E-12 1E-16 138.9 10.4 218 326-574 239-497 (560)
156 PRK07471 DNA polymerase III su 99.3 3.5E-11 7.7E-16 129.3 16.7 186 326-548 13-239 (365)
157 PRK15424 propionate catabolism 99.3 7.9E-12 1.7E-16 140.1 12.1 210 329-569 216-479 (538)
158 COG0542 clpA ATP-binding subun 99.3 2.1E-11 4.5E-16 139.9 15.0 194 332-552 491-751 (786)
159 TIGR03015 pepcterm_ATPase puta 99.3 1.6E-10 3.4E-15 117.8 20.1 192 366-575 44-266 (269)
160 CHL00095 clpC Clp protease ATP 99.3 5E-11 1.1E-15 140.4 18.7 200 332-552 509-778 (821)
161 PRK10865 protein disaggregatio 99.3 6.2E-11 1.3E-15 140.0 19.4 201 332-553 568-826 (857)
162 COG0542 clpA ATP-binding subun 99.3 7.7E-11 1.7E-15 135.3 19.5 207 326-558 164-396 (786)
163 COG0714 MoxR-like ATPases [Gen 99.3 8.5E-11 1.8E-15 124.5 18.6 132 366-514 44-201 (329)
164 TIGR00764 lon_rel lon-related 99.3 4.2E-11 9.1E-16 136.5 17.0 104 470-576 267-392 (608)
165 COG2607 Predicted ATPase (AAA+ 99.3 1.4E-10 3E-15 116.2 17.7 196 325-551 53-277 (287)
166 smart00350 MCM minichromosome 99.3 6.9E-11 1.5E-15 132.3 17.2 223 333-575 204-504 (509)
167 PRK05022 anaerobic nitric oxid 99.3 3.1E-11 6.8E-16 135.1 14.2 208 330-569 185-437 (509)
168 TIGR01817 nifA Nif-specific re 99.3 8.7E-12 1.9E-16 140.2 9.8 209 326-569 190-439 (534)
169 PRK05564 DNA polymerase III su 99.3 8.7E-11 1.9E-15 123.5 16.1 169 330-538 2-182 (313)
170 PRK13531 regulatory ATPase Rav 99.3 1.6E-10 3.5E-15 127.1 17.9 213 333-577 21-285 (498)
171 PRK10820 DNA-binding transcrip 99.2 4.6E-11 1E-15 134.1 13.5 207 327-568 199-447 (520)
172 PRK11608 pspF phage shock prot 99.2 5.1E-11 1.1E-15 126.2 13.2 194 330-555 4-240 (326)
173 TIGR02974 phageshock_pspF psp 99.2 3.9E-11 8.4E-16 127.4 11.8 190 334-555 1-233 (329)
174 PRK11388 DNA-binding transcrip 99.2 3.2E-11 6.9E-16 138.4 12.0 211 328-573 321-569 (638)
175 smart00382 AAA ATPases associa 99.2 2.5E-11 5.5E-16 107.7 8.7 126 365-503 2-147 (148)
176 PRK07399 DNA polymerase III su 99.2 1.1E-10 2.5E-15 123.1 15.0 184 330-550 2-224 (314)
177 PHA02244 ATPase-like protein 99.2 3E-10 6.4E-15 121.3 17.5 150 329-507 94-265 (383)
178 PRK04132 replication factor C 99.2 1.4E-10 3.1E-15 135.2 16.4 159 367-553 566-737 (846)
179 COG2204 AtoC Response regulato 99.2 4.2E-11 9.1E-16 131.1 10.8 206 329-569 138-385 (464)
180 KOG0991 Replication factor C, 99.2 4.7E-11 1E-15 118.9 10.0 185 324-551 19-215 (333)
181 PF01078 Mg_chelatase: Magnesi 99.2 1.3E-11 2.9E-16 122.1 5.7 119 330-480 1-158 (206)
182 COG1221 PspF Transcriptional r 99.2 4.6E-11 9.9E-16 128.7 10.3 199 327-556 73-310 (403)
183 COG0470 HolB ATPase involved i 99.2 3.2E-10 6.9E-15 118.1 16.2 146 333-510 2-175 (325)
184 TIGR00678 holB DNA polymerase 99.2 2.5E-10 5.4E-15 111.0 14.3 144 363-538 12-183 (188)
185 KOG2680 DNA helicase TIP49, TB 99.2 4.4E-10 9.5E-15 115.4 15.9 100 473-576 319-430 (454)
186 PRK15429 formate hydrogenlyase 99.2 2.6E-10 5.6E-15 132.1 16.2 196 328-555 372-609 (686)
187 PRK09862 putative ATP-dependen 99.2 3.5E-10 7.7E-15 125.8 16.5 211 329-574 188-491 (506)
188 KOG1969 DNA replication checkp 99.2 4.6E-10 1E-14 126.1 17.0 207 324-559 263-519 (877)
189 TIGR02031 BchD-ChlD magnesium 99.2 2.6E-10 5.7E-15 129.6 14.9 189 366-577 17-260 (589)
190 TIGR00602 rad24 checkpoint pro 99.2 3.9E-10 8.4E-15 128.5 15.8 206 324-554 76-327 (637)
191 COG3604 FhlA Transcriptional r 99.1 1.3E-10 2.7E-15 126.4 10.3 200 327-555 218-456 (550)
192 PRK11331 5-methylcytosine-spec 99.1 4.7E-10 1E-14 122.5 14.6 155 331-502 174-357 (459)
193 COG0606 Predicted ATPase with 99.1 1.1E-10 2.3E-15 126.8 8.1 213 328-574 175-484 (490)
194 PF07728 AAA_5: AAA domain (dy 99.1 9.6E-11 2.1E-15 108.0 6.6 110 367-494 1-139 (139)
195 PRK08058 DNA polymerase III su 99.1 1.4E-09 3E-14 115.5 14.8 149 330-514 3-180 (329)
196 COG1219 ClpX ATP-dependent pro 99.1 1.2E-09 2.7E-14 113.1 13.0 127 334-466 63-203 (408)
197 PRK05707 DNA polymerase III su 99.1 1.7E-09 3.7E-14 114.9 14.4 149 362-538 19-195 (328)
198 TIGR02915 PEP_resp_reg putativ 99.1 5.7E-10 1.2E-14 122.2 10.4 205 330-569 137-383 (445)
199 KOG2227 Pre-initiation complex 99.0 8.3E-09 1.8E-13 111.6 17.0 228 333-582 151-422 (529)
200 COG1220 HslU ATP-dependent pro 99.0 2.9E-09 6.3E-14 111.1 12.7 83 426-513 252-346 (444)
201 smart00763 AAA_PrkA PrkA AAA d 99.0 7.1E-09 1.5E-13 110.6 15.9 83 331-420 49-144 (361)
202 COG1239 ChlI Mg-chelatase subu 99.0 6.9E-09 1.5E-13 111.5 15.8 217 328-576 13-323 (423)
203 PRK08116 hypothetical protein; 99.0 4.1E-09 8.9E-14 108.9 12.0 163 328-514 81-258 (268)
204 PF07724 AAA_2: AAA domain (Cd 99.0 1E-09 2.3E-14 106.1 7.1 113 364-482 2-131 (171)
205 PRK10923 glnG nitrogen regulat 98.9 6.5E-09 1.4E-13 114.7 13.6 208 330-572 136-385 (469)
206 PF00158 Sigma54_activat: Sigm 98.9 1.7E-09 3.7E-14 104.3 7.6 120 334-481 1-144 (168)
207 PRK11361 acetoacetate metaboli 98.9 7.9E-09 1.7E-13 113.4 13.7 208 330-572 141-390 (457)
208 KOG1514 Origin recognition com 98.9 3.4E-08 7.3E-13 111.2 17.7 236 334-592 398-673 (767)
209 PRK15115 response regulator Gl 98.9 4.4E-09 9.6E-14 115.2 10.2 182 366-572 158-381 (444)
210 PTZ00111 DNA replication licen 98.9 2E-08 4.4E-13 117.2 15.5 161 333-513 451-654 (915)
211 PF13177 DNA_pol3_delta2: DNA 98.9 9.2E-09 2E-13 98.5 10.5 134 336-503 1-161 (162)
212 PRK06871 DNA polymerase III su 98.9 4.4E-08 9.5E-13 103.9 16.5 135 362-516 21-179 (325)
213 PRK13765 ATP-dependent proteas 98.9 1.5E-08 3.2E-13 115.9 13.7 102 471-574 277-399 (637)
214 PRK06964 DNA polymerase III su 98.9 1.7E-08 3.7E-13 107.7 12.2 134 362-515 18-203 (342)
215 PF01637 Arch_ATPase: Archaeal 98.8 1.7E-08 3.7E-13 99.1 11.1 167 365-546 20-233 (234)
216 TIGR01818 ntrC nitrogen regula 98.8 1.2E-08 2.5E-13 112.4 10.5 206 332-572 134-381 (463)
217 PRK07952 DNA replication prote 98.8 4.3E-08 9.3E-13 100.1 13.6 132 327-481 67-205 (244)
218 PRK07993 DNA polymerase III su 98.8 5.1E-08 1.1E-12 103.9 14.6 151 362-538 21-196 (334)
219 KOG0990 Replication factor C, 98.8 1.1E-08 2.3E-13 106.4 8.3 190 323-551 32-233 (360)
220 PRK13406 bchD magnesium chelat 98.8 3.7E-08 8E-13 111.8 12.9 191 366-577 26-252 (584)
221 KOG0732 AAA+-type ATPase conta 98.8 1.2E-08 2.5E-13 119.8 8.8 200 240-441 406-670 (1080)
222 PRK12377 putative replication 98.8 4.7E-08 1E-12 100.0 12.0 70 365-436 101-175 (248)
223 KOG2035 Replication factor C, 98.7 1.2E-07 2.5E-12 97.1 13.4 178 328-538 9-220 (351)
224 KOG0745 Putative ATP-dependent 98.7 3.6E-08 7.8E-13 105.8 9.9 97 366-465 227-331 (564)
225 PRK08939 primosomal protein Dn 98.7 6.7E-08 1.5E-12 101.8 11.7 102 328-436 123-229 (306)
226 PRK10365 transcriptional regul 98.7 3.3E-08 7.1E-13 108.0 9.6 205 333-572 140-386 (441)
227 PF07726 AAA_3: ATPase family 98.7 4.3E-09 9.2E-14 96.9 2.0 112 367-495 1-130 (131)
228 PRK08769 DNA polymerase III su 98.7 1.2E-07 2.7E-12 100.3 13.2 133 362-514 23-183 (319)
229 PF03215 Rad17: Rad17 cell cyc 98.7 3.9E-07 8.4E-12 102.3 17.4 208 324-556 11-269 (519)
230 PRK08181 transposase; Validate 98.7 1.1E-07 2.4E-12 98.4 12.0 71 365-437 106-180 (269)
231 PRK06090 DNA polymerase III su 98.7 2.3E-07 5E-12 98.2 14.0 130 362-514 22-178 (319)
232 PRK06835 DNA replication prote 98.7 1.7E-07 3.7E-12 99.7 12.6 70 365-436 183-258 (329)
233 PF14532 Sigma54_activ_2: Sigm 98.7 1.4E-08 3.1E-13 94.1 3.5 82 335-440 1-85 (138)
234 PF13173 AAA_14: AAA domain 98.6 2.8E-07 6.1E-12 84.3 10.2 118 366-507 3-126 (128)
235 PRK06526 transposase; Provisio 98.6 1.6E-07 3.4E-12 96.5 9.3 101 364-481 97-201 (254)
236 COG1484 DnaC DNA replication p 98.6 1.6E-07 3.5E-12 96.4 8.9 73 364-437 104-180 (254)
237 PF13401 AAA_22: AAA domain; P 98.6 2.9E-07 6.4E-12 83.2 8.9 98 365-478 4-125 (131)
238 PRK09183 transposase/IS protei 98.6 1.2E-07 2.6E-12 97.5 7.2 73 364-437 101-177 (259)
239 PRK08699 DNA polymerase III su 98.5 3.9E-07 8.4E-12 96.8 10.9 132 362-514 18-183 (325)
240 PRK06921 hypothetical protein; 98.5 3E-07 6.6E-12 95.0 9.4 69 364-435 116-188 (266)
241 PF01695 IstB_IS21: IstB-like 98.5 8.3E-08 1.8E-12 93.4 4.3 70 364-435 46-119 (178)
242 KOG1051 Chaperone HSP104 and r 98.5 8.5E-07 1.8E-11 103.7 13.0 126 333-480 563-710 (898)
243 KOG1970 Checkpoint RAD17-RFC c 98.5 6.9E-06 1.5E-10 90.8 17.9 209 326-555 76-320 (634)
244 PF05729 NACHT: NACHT domain 98.4 4.3E-06 9.3E-11 77.9 12.4 141 367-518 2-165 (166)
245 KOG0478 DNA replication licens 98.4 3.6E-06 7.9E-11 94.7 13.7 204 364-575 461-724 (804)
246 COG3283 TyrR Transcriptional r 98.4 3.9E-06 8.5E-11 88.6 12.9 200 327-555 199-432 (511)
247 KOG0480 DNA replication licens 98.3 5.7E-06 1.2E-10 92.6 13.7 224 331-576 344-644 (764)
248 cd01120 RecA-like_NTPases RecA 98.3 3.8E-06 8.2E-11 77.6 10.6 109 368-481 2-137 (165)
249 PLN03210 Resistant to P. syrin 98.3 5E-06 1.1E-10 101.9 14.4 179 327-540 179-389 (1153)
250 COG1241 MCM2 Predicted ATPase 98.3 2.6E-06 5.6E-11 97.7 10.8 221 333-576 287-593 (682)
251 PF00493 MCM: MCM2/3/5 family 98.3 2E-07 4.3E-12 99.2 1.7 221 333-575 25-326 (331)
252 KOG0482 DNA replication licens 98.3 2.1E-06 4.4E-11 93.9 8.7 231 332-575 342-638 (721)
253 PF03969 AFG1_ATPase: AFG1-lik 98.3 3.9E-06 8.5E-11 90.4 10.9 103 362-481 59-168 (362)
254 COG3267 ExeA Type II secretory 98.3 3.1E-05 6.7E-10 79.0 16.0 190 367-569 53-267 (269)
255 PF00931 NB-ARC: NB-ARC domain 98.2 2.7E-05 5.9E-10 79.9 15.4 174 343-547 4-202 (287)
256 PF12775 AAA_7: P-loop contain 98.2 3.6E-06 7.8E-11 87.3 8.2 138 365-518 33-195 (272)
257 COG3284 AcoR Transcriptional a 98.2 6.6E-06 1.4E-10 92.5 10.6 206 335-572 316-554 (606)
258 TIGR02237 recomb_radB DNA repa 98.2 7.1E-06 1.5E-10 80.9 9.1 115 361-479 8-148 (209)
259 PRK05917 DNA polymerase III su 98.2 1.2E-05 2.6E-10 84.0 11.0 122 362-503 16-154 (290)
260 PRK05818 DNA polymerase III su 98.1 0.00011 2.4E-09 75.6 17.3 121 363-503 5-147 (261)
261 PRK07132 DNA polymerase III su 98.1 8.8E-05 1.9E-09 78.1 15.2 127 363-514 16-160 (299)
262 KOG0481 DNA replication licens 98.1 3.2E-05 6.9E-10 84.9 12.0 228 333-575 332-639 (729)
263 PRK07276 DNA polymerase III su 98.1 7.9E-05 1.7E-09 78.1 14.6 129 362-513 21-172 (290)
264 TIGR01618 phage_P_loop phage n 98.0 1.9E-05 4.2E-10 79.5 8.5 73 364-438 11-95 (220)
265 PF13191 AAA_16: AAA ATPase do 98.0 1.5E-05 3.2E-10 76.0 7.4 59 334-401 2-63 (185)
266 cd01124 KaiC KaiC is a circadi 98.0 6E-05 1.3E-09 72.4 11.3 71 368-438 2-109 (187)
267 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00011 2.5E-09 74.5 12.6 130 365-512 32-176 (231)
268 COG1485 Predicted ATPase [Gene 97.9 2.4E-05 5.3E-10 82.9 7.4 130 337-484 30-175 (367)
269 KOG1968 Replication factor C, 97.9 1.2E-05 2.5E-10 94.8 5.6 205 327-554 315-535 (871)
270 PF00910 RNA_helicase: RNA hel 97.9 1.4E-05 3E-10 71.2 4.4 23 368-390 1-23 (107)
271 PRK09361 radB DNA repair and r 97.9 7.5E-05 1.6E-09 74.6 9.8 116 361-479 19-160 (225)
272 TIGR02688 conserved hypothetic 97.8 0.00019 4.2E-09 78.4 13.3 61 365-437 209-273 (449)
273 PRK11823 DNA repair protein Ra 97.8 8.5E-05 1.8E-09 82.4 10.8 79 361-439 76-171 (446)
274 PHA00729 NTP-binding motif con 97.8 4E-05 8.7E-10 77.4 7.3 24 367-390 19-42 (226)
275 KOG1051 Chaperone HSP104 and r 97.8 0.00016 3.5E-09 85.1 13.1 179 365-557 208-412 (898)
276 cd01121 Sms Sms (bacterial rad 97.8 9.5E-05 2.1E-09 80.1 10.5 79 361-439 78-173 (372)
277 TIGR02012 tigrfam_recA protein 97.8 0.00011 2.4E-09 78.0 10.2 119 361-479 51-190 (321)
278 PRK00131 aroK shikimate kinase 97.8 9E-05 1.9E-09 70.0 8.2 35 363-397 2-36 (175)
279 cd01394 radB RadB. The archaea 97.7 0.00021 4.5E-09 71.0 10.5 39 361-399 15-56 (218)
280 PRK06067 flagellar accessory p 97.7 0.00021 4.6E-09 71.9 10.5 39 361-399 21-62 (234)
281 PRK08533 flagellar accessory p 97.7 0.00026 5.6E-09 71.7 10.8 77 361-437 20-130 (230)
282 TIGR02858 spore_III_AA stage I 97.7 0.00013 2.8E-09 75.8 8.5 113 366-501 112-256 (270)
283 PF14516 AAA_35: AAA-like doma 97.7 0.0022 4.9E-08 68.4 18.2 161 365-539 31-232 (331)
284 PF13207 AAA_17: AAA domain; P 97.7 3E-05 6.6E-10 69.3 3.4 30 368-397 2-31 (121)
285 COG1618 Predicted nucleotide k 97.7 0.00028 6.1E-09 67.6 9.9 26 364-389 4-29 (179)
286 PRK08118 topology modulation p 97.7 8E-05 1.7E-09 71.7 6.3 32 367-398 3-34 (167)
287 KOG0477 DNA replication licens 97.7 0.0002 4.2E-09 80.4 10.0 227 333-576 450-758 (854)
288 COG1373 Predicted ATPase (AAA+ 97.7 0.00086 1.9E-08 73.4 15.0 135 367-522 39-186 (398)
289 PRK13949 shikimate kinase; Pro 97.7 0.00043 9.3E-09 66.8 11.2 32 366-397 2-33 (169)
290 PRK00771 signal recognition pa 97.6 0.00077 1.7E-08 74.6 14.3 195 363-576 93-333 (437)
291 KOG2170 ATPase of the AAA+ sup 97.6 0.0004 8.7E-09 72.4 11.1 96 333-437 83-191 (344)
292 cd00983 recA RecA is a bacter 97.6 0.00022 4.7E-09 75.9 9.2 119 361-479 51-190 (325)
293 PF05707 Zot: Zonular occluden 97.6 6.8E-05 1.5E-09 73.7 5.0 124 368-504 3-147 (193)
294 PF13604 AAA_30: AAA domain; P 97.6 0.00028 6.2E-09 69.6 8.7 98 366-480 19-132 (196)
295 cd03283 ABC_MutS-like MutS-lik 97.6 0.00043 9.3E-09 68.6 9.9 105 365-484 25-151 (199)
296 PTZ00202 tuzin; Provisional 97.6 0.0063 1.4E-07 67.1 19.4 63 329-400 259-321 (550)
297 cd01393 recA_like RecA is a b 97.6 0.00024 5.2E-09 70.7 8.1 116 361-478 15-166 (226)
298 PRK12723 flagellar biosynthesi 97.5 0.00079 1.7E-08 73.4 12.6 131 364-510 173-329 (388)
299 PRK07261 topology modulation p 97.5 0.00015 3.3E-09 69.9 6.2 33 367-399 2-34 (171)
300 PF13671 AAA_33: AAA domain; P 97.5 0.00024 5.3E-09 65.1 7.3 37 368-406 2-38 (143)
301 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00078 1.7E-08 68.3 11.6 40 361-400 17-59 (237)
302 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00036 7.7E-09 69.9 9.0 116 361-478 15-167 (235)
303 cd01128 rho_factor Transcripti 97.5 0.00086 1.9E-08 68.9 11.9 28 364-391 15-42 (249)
304 PRK15455 PrkA family serine pr 97.5 0.00011 2.4E-09 82.8 5.7 64 329-398 73-137 (644)
305 KOG2228 Origin recognition com 97.5 0.00065 1.4E-08 71.8 10.9 158 334-516 26-219 (408)
306 PRK14722 flhF flagellar biosyn 97.5 0.00028 6.1E-09 76.4 8.5 111 363-489 135-267 (374)
307 cd00046 DEXDc DEAD-like helica 97.5 0.00063 1.4E-08 60.1 9.4 24 366-389 1-24 (144)
308 PRK10536 hypothetical protein; 97.5 0.00067 1.5E-08 69.9 10.7 22 367-388 76-97 (262)
309 PRK14532 adenylate kinase; Pro 97.5 0.00041 8.8E-09 67.3 8.7 36 367-404 2-37 (188)
310 PRK09376 rho transcription ter 97.5 0.00049 1.1E-08 74.7 9.6 74 367-440 171-272 (416)
311 PRK04296 thymidine kinase; Pro 97.5 0.00057 1.2E-08 67.1 9.3 69 367-436 4-90 (190)
312 PF06309 Torsin: Torsin; Inte 97.5 0.00032 6.9E-09 64.8 6.9 51 333-389 26-77 (127)
313 PF07693 KAP_NTPase: KAP famil 97.4 0.0058 1.2E-07 64.0 17.0 78 424-518 172-265 (325)
314 PF06745 KaiC: KaiC; InterPro 97.4 0.00066 1.4E-08 67.9 9.4 97 361-464 15-148 (226)
315 TIGR00416 sms DNA repair prote 97.4 0.00082 1.8E-08 74.8 11.0 78 361-438 90-184 (454)
316 PF00437 T2SE: Type II/IV secr 97.4 0.00016 3.4E-09 74.4 4.5 98 327-434 99-207 (270)
317 PF10236 DAP3: Mitochondrial r 97.4 0.0095 2.1E-07 63.1 18.0 132 413-546 142-308 (309)
318 PRK06762 hypothetical protein; 97.4 0.00063 1.4E-08 64.6 8.2 40 365-404 2-41 (166)
319 COG1116 TauB ABC-type nitrate/ 97.4 0.00074 1.6E-08 68.9 8.9 26 363-388 27-52 (248)
320 KOG2383 Predicted ATPase [Gene 97.3 0.0014 2.9E-08 70.8 11.0 28 362-389 111-138 (467)
321 COG0563 Adk Adenylate kinase a 97.3 0.00079 1.7E-08 65.7 8.6 34 367-402 2-35 (178)
322 PRK04841 transcriptional regul 97.3 0.0044 9.5E-08 73.8 16.6 155 366-545 33-223 (903)
323 PRK13948 shikimate kinase; Pro 97.3 0.00077 1.7E-08 66.0 8.4 35 363-397 8-42 (182)
324 cd03216 ABC_Carb_Monos_I This 97.3 0.00043 9.3E-09 66.1 6.5 106 362-482 23-143 (163)
325 cd01131 PilT Pilus retraction 97.3 0.00031 6.8E-09 69.3 5.7 67 367-433 3-83 (198)
326 COG4650 RtcR Sigma54-dependent 97.3 0.0012 2.6E-08 68.7 9.8 74 362-439 205-297 (531)
327 PRK14974 cell division protein 97.3 0.0015 3.3E-08 69.9 11.1 73 364-436 139-234 (336)
328 PF06480 FtsH_ext: FtsH Extrac 97.3 0.00012 2.6E-09 64.0 2.3 31 178-208 25-55 (110)
329 TIGR01420 pilT_fam pilus retra 97.3 0.00054 1.2E-08 73.4 7.7 70 365-434 122-205 (343)
330 cd00464 SK Shikimate kinase (S 97.3 0.00044 9.5E-09 64.2 5.9 39 367-407 1-39 (154)
331 cd01122 GP4d_helicase GP4d_hel 97.3 0.001 2.2E-08 68.2 9.1 38 361-398 26-67 (271)
332 KOG2543 Origin recognition com 97.3 0.005 1.1E-07 66.2 14.3 160 332-515 6-192 (438)
333 PRK13947 shikimate kinase; Pro 97.3 0.00025 5.4E-09 67.5 4.1 31 367-397 3-33 (171)
334 cd01130 VirB11-like_ATPase Typ 97.3 0.0004 8.8E-09 67.7 5.6 72 363-434 23-110 (186)
335 PRK09354 recA recombinase A; P 97.3 0.0012 2.6E-08 70.8 9.7 78 361-438 56-152 (349)
336 PRK05973 replicative DNA helic 97.3 0.0018 3.9E-08 66.1 10.4 39 361-399 60-101 (237)
337 KOG3347 Predicted nucleotide k 97.3 0.00056 1.2E-08 64.8 6.2 33 365-397 7-39 (176)
338 COG0703 AroK Shikimate kinase 97.2 0.00079 1.7E-08 65.3 7.2 32 366-397 3-34 (172)
339 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0015 3.3E-08 66.5 9.7 35 368-402 2-39 (249)
340 COG3854 SpoIIIAA ncharacterize 97.2 0.0018 4E-08 65.5 9.8 70 366-435 138-229 (308)
341 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0032 6.9E-08 63.0 11.7 38 361-398 16-56 (229)
342 TIGR02782 TrbB_P P-type conjug 97.2 0.00029 6.2E-09 74.2 4.3 70 365-434 132-214 (299)
343 COG5271 MDN1 AAA ATPase contai 97.2 0.0017 3.6E-08 79.4 10.8 136 365-516 1543-1703(4600)
344 PRK03839 putative kinase; Prov 97.2 0.00027 5.8E-09 68.2 3.7 31 367-397 2-32 (180)
345 cd00984 DnaB_C DnaB helicase C 97.2 0.0013 2.8E-08 66.1 8.8 39 361-399 9-51 (242)
346 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0035 7.5E-08 62.7 11.6 98 361-464 12-141 (224)
347 PRK12339 2-phosphoglycerate ki 97.2 0.0051 1.1E-07 61.0 12.6 29 365-393 3-31 (197)
348 PLN02674 adenylate kinase 97.2 0.0017 3.8E-08 66.5 9.5 40 363-404 29-68 (244)
349 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0032 6.8E-08 63.1 11.1 23 365-387 29-51 (213)
350 PRK13946 shikimate kinase; Pro 97.2 0.00099 2.1E-08 64.8 7.3 34 364-397 9-42 (184)
351 cd00227 CPT Chloramphenicol (C 97.2 0.00039 8.5E-09 66.9 4.3 38 366-403 3-40 (175)
352 PRK00625 shikimate kinase; Pro 97.2 0.00036 7.8E-09 67.8 4.0 31 367-397 2-32 (173)
353 cd02020 CMPK Cytidine monophos 97.2 0.0011 2.3E-08 60.9 7.1 30 368-397 2-31 (147)
354 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0012 2.5E-08 68.4 8.0 94 329-435 57-160 (264)
355 PRK04328 hypothetical protein; 97.2 0.004 8.7E-08 63.7 11.8 38 361-398 19-59 (249)
356 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0029 6.3E-08 65.2 10.8 39 361-399 32-73 (259)
357 PF00448 SRP54: SRP54-type pro 97.1 0.001 2.3E-08 65.8 7.2 131 365-509 1-156 (196)
358 PRK10867 signal recognition pa 97.1 0.0071 1.5E-07 66.9 14.4 199 362-576 97-341 (433)
359 PRK13900 type IV secretion sys 97.1 0.00051 1.1E-08 73.4 5.3 72 363-434 158-245 (332)
360 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.0004 8.7E-09 66.8 3.9 35 368-404 2-36 (183)
361 COG4178 ABC-type uncharacteriz 97.1 0.001 2.2E-08 75.7 7.5 28 361-388 415-442 (604)
362 PRK11889 flhF flagellar biosyn 97.1 0.0028 6.1E-08 69.1 10.6 105 364-481 240-364 (436)
363 cd00544 CobU Adenosylcobinamid 97.1 0.003 6.5E-08 61.2 9.5 94 368-465 2-114 (169)
364 PF03266 NTPase_1: NTPase; In 97.1 0.00051 1.1E-08 66.4 4.2 23 367-389 1-23 (168)
365 PRK14531 adenylate kinase; Pro 97.1 0.00055 1.2E-08 66.5 4.3 36 366-403 3-38 (183)
366 PRK05800 cobU adenosylcobinami 97.1 0.0048 1E-07 59.8 10.7 92 367-465 3-114 (170)
367 PRK13851 type IV secretion sys 97.1 0.00063 1.4E-08 73.0 5.0 73 362-434 159-246 (344)
368 TIGR02655 circ_KaiC circadian 97.1 0.0038 8.2E-08 70.0 11.4 78 361-438 259-367 (484)
369 PRK09519 recA DNA recombinatio 97.1 0.0026 5.7E-08 74.6 10.4 118 361-478 56-194 (790)
370 cd03238 ABC_UvrA The excision 97.0 0.0087 1.9E-07 58.3 12.3 119 362-502 18-163 (176)
371 TIGR02238 recomb_DMC1 meiotic 97.0 0.0023 4.9E-08 67.9 8.9 116 361-478 92-243 (313)
372 PF04665 Pox_A32: Poxvirus A32 97.0 0.0097 2.1E-07 60.9 13.0 133 363-515 11-169 (241)
373 KOG0479 DNA replication licens 97.0 0.0056 1.2E-07 68.7 11.9 225 333-579 302-646 (818)
374 PHA02624 large T antigen; Prov 97.0 0.0018 3.9E-08 73.6 8.3 122 361-502 427-561 (647)
375 PRK04301 radA DNA repair and r 97.0 0.0018 3.8E-08 68.6 7.9 117 361-479 98-251 (317)
376 PHA02774 E1; Provisional 97.0 0.0024 5.2E-08 72.3 9.2 34 365-398 434-468 (613)
377 TIGR02788 VirB11 P-type DNA tr 97.0 0.00092 2E-08 70.6 5.7 74 361-434 140-228 (308)
378 PRK06217 hypothetical protein; 97.0 0.00061 1.3E-08 66.1 4.0 31 367-397 3-33 (183)
379 PRK08154 anaerobic benzoate ca 97.0 0.0023 5E-08 67.6 8.5 36 362-397 130-165 (309)
380 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0033 7.1E-08 58.9 8.6 72 362-435 23-99 (144)
381 TIGR02236 recomb_radA DNA repa 97.0 0.0024 5.3E-08 67.2 8.6 117 361-479 91-245 (310)
382 cd01428 ADK Adenylate kinase ( 97.0 0.00063 1.4E-08 65.8 3.8 35 368-404 2-36 (194)
383 PRK13764 ATPase; Provisional 97.0 0.0011 2.3E-08 76.0 6.2 70 365-435 257-335 (602)
384 COG4619 ABC-type uncharacteriz 97.0 0.0059 1.3E-07 59.3 10.2 27 362-388 26-52 (223)
385 PRK12724 flagellar biosynthesi 97.0 0.0085 1.8E-07 65.9 12.7 113 364-489 222-354 (432)
386 PF13479 AAA_24: AAA domain 97.0 0.0021 4.6E-08 64.2 7.5 68 365-436 3-80 (213)
387 PRK06696 uridine kinase; Valid 97.0 0.001 2.2E-08 66.7 5.3 40 363-402 20-62 (223)
388 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0025 5.4E-08 60.0 7.6 73 363-435 23-109 (157)
389 PRK14530 adenylate kinase; Pro 96.9 0.0008 1.7E-08 67.0 4.3 30 367-396 5-34 (215)
390 smart00534 MUTSac ATPase domai 96.9 0.0046 1E-07 60.3 9.5 19 368-386 2-20 (185)
391 PTZ00088 adenylate kinase 1; P 96.9 0.00087 1.9E-08 68.0 4.6 34 364-397 5-38 (229)
392 cd02021 GntK Gluconate kinase 96.9 0.00071 1.5E-08 63.0 3.7 28 368-395 2-29 (150)
393 PRK06547 hypothetical protein; 96.9 0.00087 1.9E-08 65.0 4.3 35 363-397 13-47 (172)
394 cd03243 ABC_MutS_homologs The 96.9 0.003 6.5E-08 62.3 8.3 22 366-387 30-51 (202)
395 PLN02200 adenylate kinase fami 96.9 0.00085 1.8E-08 68.2 4.4 41 362-404 40-80 (234)
396 PLN03187 meiotic recombination 96.9 0.0024 5.3E-08 68.6 8.0 116 361-478 122-273 (344)
397 cd02027 APSK Adenosine 5'-phos 96.9 0.0028 6.1E-08 59.7 7.6 36 368-403 2-40 (149)
398 TIGR02525 plasmid_TraJ plasmid 96.9 0.0019 4.1E-08 70.1 7.0 68 367-434 151-235 (372)
399 PRK00279 adk adenylate kinase; 96.9 0.0019 4.2E-08 64.2 6.6 30 367-396 2-31 (215)
400 TIGR01313 therm_gnt_kin carboh 96.9 0.00081 1.8E-08 63.6 3.6 32 368-401 1-32 (163)
401 PRK06581 DNA polymerase III su 96.9 0.039 8.5E-07 56.6 15.6 149 364-536 14-177 (263)
402 PRK10416 signal recognition pa 96.9 0.011 2.3E-07 63.1 12.2 36 363-398 112-150 (318)
403 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0059 1.3E-07 60.1 9.7 21 366-386 29-49 (200)
404 cd03246 ABCC_Protease_Secretio 96.9 0.0027 5.9E-08 61.0 7.1 105 363-482 26-157 (173)
405 COG4088 Predicted nucleotide k 96.9 0.0025 5.3E-08 63.6 6.8 22 368-389 4-25 (261)
406 PRK05703 flhF flagellar biosyn 96.9 0.0064 1.4E-07 67.2 10.9 38 364-401 220-262 (424)
407 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0052 1.1E-07 58.8 8.9 74 362-435 24-120 (166)
408 PRK03731 aroL shikimate kinase 96.8 0.0011 2.4E-08 63.2 4.2 32 366-397 3-34 (171)
409 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0048 1E-07 60.2 8.6 72 363-435 23-100 (177)
410 PRK05057 aroK shikimate kinase 96.8 0.0012 2.6E-08 63.8 4.3 34 365-398 4-37 (172)
411 PTZ00035 Rad51 protein; Provis 96.8 0.0044 9.6E-08 66.4 9.1 116 361-478 114-265 (337)
412 PF05272 VirE: Virulence-assoc 96.8 0.006 1.3E-07 60.6 9.3 111 361-502 48-169 (198)
413 PF09848 DUF2075: Uncharacteri 96.8 0.0031 6.8E-08 67.6 7.9 23 367-389 3-25 (352)
414 PRK13833 conjugal transfer pro 96.8 0.0017 3.6E-08 69.2 5.6 70 365-434 144-225 (323)
415 cd03228 ABCC_MRP_Like The MRP 96.8 0.0041 9E-08 59.6 7.9 28 362-389 25-52 (171)
416 TIGR03499 FlhF flagellar biosy 96.8 0.0043 9.3E-08 64.8 8.4 37 364-400 193-234 (282)
417 TIGR02655 circ_KaiC circadian 96.8 0.0099 2.1E-07 66.7 11.8 39 361-399 17-59 (484)
418 cd03247 ABCC_cytochrome_bd The 96.8 0.015 3.3E-07 56.0 11.6 28 362-389 25-52 (178)
419 PRK13695 putative NTPase; Prov 96.8 0.012 2.6E-07 56.5 10.8 23 367-389 2-24 (174)
420 PRK14528 adenylate kinase; Pro 96.8 0.0012 2.6E-08 64.5 4.0 31 366-396 2-32 (186)
421 PHA02530 pseT polynucleotide k 96.8 0.0038 8.3E-08 64.9 7.9 39 365-404 2-40 (300)
422 TIGR00959 ffh signal recogniti 96.8 0.025 5.5E-07 62.5 14.6 197 363-575 97-339 (428)
423 cd03230 ABC_DR_subfamily_A Thi 96.8 0.0044 9.5E-08 59.5 7.6 27 363-389 24-50 (173)
424 cd03115 SRP The signal recogni 96.7 0.0082 1.8E-07 57.4 9.4 33 368-400 3-38 (173)
425 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0013 2.8E-08 63.1 3.9 29 367-395 5-33 (188)
426 smart00487 DEXDc DEAD-like hel 96.7 0.011 2.5E-07 55.3 10.2 23 366-388 25-48 (201)
427 PRK14527 adenylate kinase; Pro 96.7 0.0013 2.7E-08 64.3 3.8 34 363-396 4-37 (191)
428 COG1102 Cmk Cytidylate kinase 96.7 0.0012 2.6E-08 63.4 3.4 28 368-395 3-30 (179)
429 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0039 8.5E-08 66.2 7.7 116 361-478 92-243 (316)
430 PF06414 Zeta_toxin: Zeta toxi 96.7 0.0043 9.2E-08 61.1 7.4 43 363-405 13-56 (199)
431 PRK02496 adk adenylate kinase; 96.7 0.0015 3.2E-08 63.3 4.0 30 367-396 3-32 (184)
432 PRK05541 adenylylsulfate kinas 96.7 0.0045 9.8E-08 59.4 7.3 41 363-403 5-48 (176)
433 cd03227 ABC_Class2 ABC-type Cl 96.7 0.01 2.3E-07 56.5 9.7 23 365-387 21-43 (162)
434 PRK13894 conjugal transfer ATP 96.7 0.0022 4.7E-08 68.3 5.4 71 364-434 147-229 (319)
435 PRK13808 adenylate kinase; Pro 96.7 0.0076 1.6E-07 64.5 9.5 35 367-403 2-36 (333)
436 KOG0058 Peptide exporter, ABC 96.7 0.0043 9.3E-08 71.4 7.9 28 361-388 490-517 (716)
437 TIGR00064 ftsY signal recognit 96.7 0.016 3.5E-07 60.3 11.6 38 362-399 69-109 (272)
438 PLN03186 DNA repair protein RA 96.7 0.0057 1.2E-07 65.7 8.4 117 361-479 119-271 (342)
439 TIGR01351 adk adenylate kinase 96.7 0.0015 3.3E-08 64.8 3.8 34 368-403 2-35 (210)
440 PRK09302 circadian clock prote 96.7 0.015 3.2E-07 65.6 12.1 40 361-400 27-70 (509)
441 PF10443 RNA12: RNA12 protein; 96.7 0.037 8E-07 60.8 14.6 35 482-518 197-231 (431)
442 PRK14700 recombination factor 96.6 0.011 2.4E-07 62.1 10.1 104 469-577 6-117 (300)
443 PRK12338 hypothetical protein; 96.6 0.027 5.9E-07 59.9 13.2 30 364-393 3-32 (319)
444 PF08423 Rad51: Rad51; InterP 96.6 0.0046 9.9E-08 63.7 7.3 116 368-485 41-192 (256)
445 PF01745 IPT: Isopentenyl tran 96.6 0.0022 4.8E-08 64.2 4.7 134 367-518 3-141 (233)
446 PRK14529 adenylate kinase; Pro 96.6 0.0069 1.5E-07 61.3 8.4 30 367-396 2-31 (223)
447 COG2805 PilT Tfp pilus assembl 96.6 0.0048 1.1E-07 64.6 7.2 68 368-435 128-209 (353)
448 PRK04040 adenylate kinase; Pro 96.6 0.0018 3.9E-08 63.6 3.9 31 365-395 2-34 (188)
449 COG2274 SunT ABC-type bacterio 96.6 0.0063 1.4E-07 71.2 8.9 69 411-502 614-682 (709)
450 TIGR02533 type_II_gspE general 96.6 0.0063 1.4E-07 68.3 8.7 95 327-435 217-322 (486)
451 TIGR01526 nadR_NMN_Atrans nico 96.6 0.005 1.1E-07 65.6 7.5 71 366-437 163-244 (325)
452 PF05970 PIF1: PIF1-like helic 96.6 0.009 1.9E-07 64.6 9.4 57 338-403 4-63 (364)
453 TIGR01425 SRP54_euk signal rec 96.6 0.016 3.5E-07 64.0 11.4 196 363-575 98-339 (429)
454 COG2804 PulE Type II secretory 96.6 0.0047 1E-07 68.7 7.3 92 327-435 233-338 (500)
455 cd01125 repA Hexameric Replica 96.6 0.0093 2E-07 60.4 8.8 20 368-387 4-23 (239)
456 PRK09302 circadian clock prote 96.6 0.016 3.5E-07 65.3 11.6 107 361-478 269-406 (509)
457 COG5271 MDN1 AAA ATPase contai 96.6 0.0062 1.4E-07 74.7 8.4 134 367-516 890-1047(4600)
458 PRK08099 bifunctional DNA-bind 96.6 0.0054 1.2E-07 67.2 7.5 40 364-403 218-257 (399)
459 PF13481 AAA_25: AAA domain; P 96.5 0.0044 9.6E-08 59.9 6.0 74 366-439 33-156 (193)
460 PRK10436 hypothetical protein; 96.5 0.0077 1.7E-07 67.2 8.6 93 328-435 194-298 (462)
461 TIGR00767 rho transcription te 96.5 0.0065 1.4E-07 66.4 7.8 27 364-390 167-193 (415)
462 PRK14737 gmk guanylate kinase; 96.5 0.0054 1.2E-07 60.2 6.6 26 364-389 3-28 (186)
463 PRK14730 coaE dephospho-CoA ki 96.5 0.024 5.1E-07 56.0 11.0 39 367-407 3-41 (195)
464 TIGR01448 recD_rel helicase, p 96.5 0.014 3.1E-07 68.6 11.0 97 367-481 340-455 (720)
465 cd03213 ABCG_EPDR ABCG transpo 96.5 0.016 3.4E-07 56.9 9.7 28 362-389 32-59 (194)
466 PF02562 PhoH: PhoH-like prote 96.5 0.0021 4.6E-08 64.2 3.6 23 367-389 21-43 (205)
467 cd03214 ABC_Iron-Siderophores_ 96.5 0.011 2.5E-07 57.0 8.5 28 362-389 22-49 (180)
468 cd03215 ABC_Carb_Monos_II This 96.5 0.01 2.2E-07 57.5 8.2 28 362-389 23-50 (182)
469 PF13238 AAA_18: AAA domain; P 96.5 0.0018 4E-08 57.7 2.7 22 368-389 1-22 (129)
470 PRK01184 hypothetical protein; 96.5 0.0024 5.3E-08 61.6 3.7 29 367-396 3-31 (184)
471 PF00406 ADK: Adenylate kinase 96.5 0.0048 1E-07 57.8 5.6 35 370-406 1-35 (151)
472 COG1936 Predicted nucleotide k 96.4 0.0022 4.7E-08 62.2 3.0 30 367-397 2-31 (180)
473 PRK04182 cytidylate kinase; Pr 96.4 0.0028 6E-08 60.3 3.8 29 367-395 2-30 (180)
474 PF13245 AAA_19: Part of AAA d 96.4 0.0041 9E-08 52.3 4.4 31 368-398 13-50 (76)
475 cd03282 ABC_MSH4_euk MutS4 hom 96.4 0.021 4.5E-07 56.9 10.0 23 365-387 29-51 (204)
476 PRK12608 transcription termina 96.4 0.031 6.7E-07 60.7 11.9 24 366-389 134-157 (380)
477 cd03229 ABC_Class3 This class 96.4 0.0095 2.1E-07 57.5 7.3 27 363-389 24-50 (178)
478 TIGR01069 mutS2 MutS2 family p 96.4 0.03 6.5E-07 66.4 12.8 23 366-388 323-345 (771)
479 TIGR02173 cyt_kin_arch cytidyl 96.4 0.003 6.5E-08 59.7 3.7 29 368-396 3-31 (171)
480 TIGR02538 type_IV_pilB type IV 96.4 0.0081 1.8E-07 68.7 7.9 95 328-435 292-396 (564)
481 TIGR00152 dephospho-CoA kinase 96.4 0.023 4.9E-07 55.3 9.9 41 368-410 2-42 (188)
482 cd03232 ABC_PDR_domain2 The pl 96.4 0.02 4.3E-07 56.0 9.4 26 363-388 31-56 (192)
483 PRK00889 adenylylsulfate kinas 96.4 0.014 2.9E-07 56.0 8.1 39 364-402 3-44 (175)
484 PF13521 AAA_28: AAA domain; P 96.3 0.0034 7.4E-08 59.5 3.9 35 368-403 2-36 (163)
485 PF08298 AAA_PrkA: PrkA AAA do 96.3 0.0089 1.9E-07 64.1 7.3 61 331-398 59-122 (358)
486 TIGR03819 heli_sec_ATPase heli 96.3 0.005 1.1E-07 66.1 5.5 70 365-434 178-263 (340)
487 PRK10263 DNA translocase FtsK; 96.3 0.022 4.8E-07 69.6 11.4 74 427-514 1143-1218(1355)
488 PRK12337 2-phosphoglycerate ki 96.3 0.057 1.2E-06 60.1 13.8 86 497-591 386-472 (475)
489 TIGR02768 TraA_Ti Ti-type conj 96.3 0.016 3.5E-07 68.3 10.2 71 367-437 370-452 (744)
490 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.021 4.6E-07 57.7 9.7 24 364-387 30-53 (222)
491 PRK08233 hypothetical protein; 96.3 0.0038 8.3E-08 59.5 4.2 33 366-398 4-37 (182)
492 PRK11174 cysteine/glutathione 96.3 0.015 3.2E-07 66.5 9.5 29 361-389 372-400 (588)
493 COG1066 Sms Predicted ATP-depe 96.3 0.031 6.8E-07 60.9 11.3 78 363-440 91-184 (456)
494 PRK13541 cytochrome c biogenes 96.3 0.029 6.4E-07 54.8 10.4 28 362-389 23-50 (195)
495 cd02022 DPCK Dephospho-coenzym 96.3 0.019 4.1E-07 55.6 8.9 37 368-407 2-38 (179)
496 PF12780 AAA_8: P-loop contain 96.3 0.012 2.6E-07 61.2 7.9 169 333-518 9-212 (268)
497 PRK12726 flagellar biosynthesi 96.3 0.018 4E-07 62.6 9.5 60 337-399 180-243 (407)
498 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0067 1.4E-07 65.6 6.1 69 366-434 135-222 (358)
499 COG4618 ArpD ABC-type protease 96.3 0.017 3.8E-07 64.2 9.1 83 413-517 479-564 (580)
500 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.026 5.6E-07 58.2 9.8 56 412-482 145-200 (254)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-66 Score=572.75 Aligned_cols=388 Identities=52% Similarity=0.717 Sum_probs=319.1
Q ss_pred eeeehHHHHHHHHcCCccEEEEeCc--EEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCchhHH
Q 007591 181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (597)
Q Consensus 181 ~~~~y~~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (597)
..++|++|+.++..++|++|.+++. .+.++.+++. ....|.+....+.. ...
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~~~~~~~~-~~~ 76 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGS-------------------------KNTVYLPKGVNDPN-LVS 76 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCc-------------------------ceEEeecCCcccHH-HHH
Confidence 3589999999999999999999874 4555555541 11233333333332 233
Q ss_pred HHHhCCceeccCCCCCcChHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCCCCccccCCCCcCcccccCCh
Q 007591 259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVD 338 (597)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~dV~G~d 338 (597)
.+..+++..........+++...+.+++++.++..++..+.....+..+....+...++......+....++|+|++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~d 156 (596)
T COG0465 77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVD 156 (596)
T ss_pred HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcH
Confidence 44455544332222333344444555555444444222211111111111112223333222334446789999999999
Q ss_pred HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHH
Q 007591 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFA 418 (597)
Q Consensus 339 e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~ 418 (597)
|+|++|.|+|+++++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++++++|+++|+|.+++++|++|.
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~ 236 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEE
Q 007591 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (597)
Q Consensus 419 ~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I 498 (597)
+|++++||||||||||+++++|+.+ .++++++++|++||||.+||+|..+.+|+||++|||||.||+||+||||||++|
T Consensus 237 qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI 315 (596)
T COG0465 237 QAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315 (596)
T ss_pred HhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceee
Confidence 9999999999999999999999876 467899999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 007591 499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 499 ~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (597)
.++.||..+|++|++.|+++ .++++++++..+|+.|+||+|+||.|++|+|++.|.++++..|++.||++|.+++++|
T Consensus 316 ~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 316 LVELPDIKGREQILKVHAKN--KPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred ecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 99999999999999999965 5778999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCHHHHhHhhcC
Q 007591 579 IEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 579 ~~k~~~~ls~~ek~ivayh 597 (597)
.+++++.++++||+++|||
T Consensus 394 ~erks~vise~ek~~~AYh 412 (596)
T COG0465 394 PERKSRVISEAEKKITAYH 412 (596)
T ss_pred cCcCCcccChhhhcchHHH
Confidence 9999999999999999999
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-61 Score=543.52 Aligned_cols=273 Identities=62% Similarity=0.918 Sum_probs=262.4
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+...+++|+||+|++++|++|.|+|++|++|+.|.++|+++|+|+||+||||||||+||||+|+|+++||+++++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
+++|.++++++++|..|+.++||||||||||+++..|++....+.++++++++||||.+||+|....+|||+|+||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999996444567899999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 007591 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
||+||+||||||++|.++.||..+|.+|++.|++...+. .+++++..||.+|+||+|+||.|+||+|++.|.|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999876544 5788999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcchhhhccCCCHHHHhHhhcC
Q 007591 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 564 t~~d~~~Al~rvi~g~~k~~~~ls~~ek~ivayh 597 (597)
+..||..|+++++.|++++...++.+||+.+|||
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~ 575 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYH 575 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhh
Confidence 9999999999999999999999999999999999
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-63 Score=525.86 Aligned_cols=269 Identities=57% Similarity=0.822 Sum_probs=259.7
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
++...+++|+||-|+||+|++|+|+|++|++|++|.++|.+.|+||||+||||||||+||||+|+|+++||+++++++|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
++|+|.++++||++|..|+..+||||||||||+++.+|... ......|++||||.+||||..+.+||||+|||.|+
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 99999999999999999999999999999999999998653 22378999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.||+||.||||||++|.|+.||..+|.+||+.|+.+ +++++++|+..||+-|.||+|+||+|+||.|++.|+..+...
T Consensus 451 ~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~ 528 (752)
T KOG0734|consen 451 ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEM 528 (752)
T ss_pred hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999975 688999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcchhhhccCCCHHHHhHhhcC
Q 007591 563 VEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 563 It~~d~~~Al~rvi~g~~k~~~~ls~~ek~ivayh 597 (597)
|+|.|++.|-+++++|.+++++.++++.|+++|||
T Consensus 529 VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyH 563 (752)
T KOG0734|consen 529 VTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYH 563 (752)
T ss_pred ccHHHHhhhhhheeecccccccccChhhhhhhhhh
Confidence 99999999999999999999999999999999999
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-58 Score=504.79 Aligned_cols=328 Identities=38% Similarity=0.640 Sum_probs=292.6
Q ss_pred cceEEEecCCCCCchhHHH-HHhCCceeccCCCC---------------------------CcChHHHHHHHHHHHHHHH
Q 007591 241 KRIVYTTTRPSDIKTPYEK-MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 241 ~~~~~~t~~~~~~~~~~~~-~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.-|+.+|++|+.+++++++ +++++++++.|+.. ++||++++|.++|.++.+.
T Consensus 321 vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~ 400 (693)
T KOG0730|consen 321 VIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQ 400 (693)
T ss_pred EEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 3467899999999999984 99999999999842 7899999999999999999
Q ss_pred HhhhccccccccccccccccccCCCCCCccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEe
Q 007591 293 GLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLV 371 (597)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~ 371 (597)
++.+... .+.... +....++.+....+.|+++|+||+|++++|.+|++.|.+ +++|+.|.++|..+|+|||||
T Consensus 401 ~~r~~~~-~~~~A~-----~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLly 474 (693)
T KOG0730|consen 401 ATRRTLE-IFQEAL-----MGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLY 474 (693)
T ss_pred HhhhhHH-HHHHHH-----hcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEE
Confidence 8775211 111111 111222333445678999999999999999999999999 999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchH
Q 007591 372 GLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDE 451 (597)
Q Consensus 372 GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e 451 (597)
||||||||++|||+|++++++|+++.++++.++|+|++++.++++|++|+..+|||||+||||+++..|++. ++..
T Consensus 475 GPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~----~~~v 550 (693)
T KOG0730|consen 475 GPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS----SSGV 550 (693)
T ss_pred CCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC----ccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999743 2267
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHH
Q 007591 452 REQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGD 531 (597)
Q Consensus 452 ~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~ 531 (597)
.++++++||++|||+....+|+||||||||+.||+||+||||||+.|+|++||.+.|.+||+.++++ +++.+++|++.
T Consensus 551 ~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~ 628 (693)
T KOG0730|consen 551 TDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEE 628 (693)
T ss_pred HHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999965 68899999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhcC--CccccHHHHHHHHHHHhcchh
Q 007591 532 IASMTTGFTGADLANLVNEAALLAGRLN--KVVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 532 LA~~t~G~SgaDL~~Lv~eAal~A~r~~--~~~It~~d~~~Al~rvi~g~~ 580 (597)
||..|+||||+||.++|++|+..|.+++ ...|+.+||.+|++.+..++.
T Consensus 629 La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 629 LAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999984 567999999999988765543
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-58 Score=476.44 Aligned_cols=255 Identities=47% Similarity=0.763 Sum_probs=244.8
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
.++.|.++++||.|+++++++|+|.++. +++|+.|..+|+.||+|||||||||||||+||||+|++.++.|+.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 4577899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
+.+|+|++++.||++|..|+.++||||||||||+++.+|-.. ..+++.|..+++-+||++||||++..+|-||+||||+
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~-~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS-GTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccC-CCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 999999999999999999999999999999999999998654 3467889999999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
|.|||||+||||||+.|+||+||.++|.+||+.|.++ +.+++++|++.||+.|+|+||+||.++|.+|.+.|.|..+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--MNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh--ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999976 57889999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchh
Q 007591 562 VVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~g~~ 580 (597)
.||++||.+|+++++....
T Consensus 379 ~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred eecHHHHHHHHHHHHhccc
Confidence 9999999999999986543
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-58 Score=494.42 Aligned_cols=360 Identities=34% Similarity=0.559 Sum_probs=299.7
Q ss_pred hhhhhhhchhhhhhhhccC--CccceEEEecCCCCCchhHH--HHHhCCceeccCCCC----------------------
Q 007591 220 SEVITNKFQESESLLKSVT--PTKRIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------- 273 (597)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------- 273 (597)
-++++|.......+..... ...-||++||||+.+|++++ ++||+++.++.|++.
T Consensus 307 rRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~ 386 (802)
T KOG0733|consen 307 RRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFK 386 (802)
T ss_pred HHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHH
Confidence 3455555333333332222 33457899999999999998 699999999999862
Q ss_pred -----CcChHHHHHHHHHHHHHHHHhhhccccccc---cc---cc---------c--cc-----c---------------
Q 007591 274 -----SGGFLNSALIALFYVAVLAGLLHRFPVSFS---QT---AG---------Q--VG-----H--------------- 311 (597)
Q Consensus 274 -----~~~~~~~~l~~l~~~~~l~~~~~~~~~~~~---~~---~~---------~--~~-----~--------------- 311 (597)
++||++++|.+||..|.+.++-|.+-..-. .. .+ + .. .
T Consensus 387 qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~ 466 (802)
T KOG0733|consen 387 QLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILN 466 (802)
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHh
Confidence 799999999999999999998764421100 00 00 0 00 0
Q ss_pred ccc------------------------CCCCCCccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCC
Q 007591 312 RKT------------------------RGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPR 366 (597)
Q Consensus 312 ~~~------------------------~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~ 366 (597)
... .++.....-...|+|+|+||.++++++.+|...+.+ +++|+.|..+|...|.
T Consensus 467 ~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~Ps 546 (802)
T KOG0733|consen 467 NPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPS 546 (802)
T ss_pred CCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCC
Confidence 000 000001112345899999999999999999998887 9999999999999999
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~ 446 (597)
||||+||||||||+||||+|+|++.+|++|.+++++++|+|++++.||.+|.+|+..+|||||+||+|+|.+.|+..
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~--- 623 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE--- 623 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC
Q 007591 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD 526 (597)
Q Consensus 447 ~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d 526 (597)
......+++||||++|||...+.+|.|||||||||.+|||++||||||+.++|++|+.++|.+||+.+.++...++.+|
T Consensus 624 -~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~d 702 (802)
T KOG0733|consen 624 -GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSD 702 (802)
T ss_pred -CchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcc
Confidence 3556689999999999999999999999999999999999999999999999999999999999999998777899999
Q ss_pred CCHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhcC----------------CccccHHHHHHHHHHHhcchhhhc
Q 007591 527 IDLGDIASMTT--GFTGADLANLVNEAALLAGRLN----------------KVVVEKIDFIHAVERSIAGIEKKT 583 (597)
Q Consensus 527 vdl~~LA~~t~--G~SgaDL~~Lv~eAal~A~r~~----------------~~~It~~d~~~Al~rvi~g~~k~~ 583 (597)
||+++||+.+. ||||+||..||++|.+.|.++. ...++..||++|+.++.....++.
T Consensus 703 Vdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~d 777 (802)
T KOG0733|consen 703 VDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERD 777 (802)
T ss_pred cCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHH
Confidence 99999998776 9999999999999999998851 124777899999999877655443
No 7
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=9.2e-52 Score=466.94 Aligned_cols=394 Identities=43% Similarity=0.630 Sum_probs=312.7
Q ss_pred cceeeehHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCchhHH
Q 007591 179 TFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (597)
Q Consensus 179 ~~~~~~y~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (597)
...+++||+|++++++|+|++|.+.++.+........... ......|.+..|......+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 107 (638)
T CHL00176 48 ASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPEL--------------------GNRPQRIRVELPVGASELIQ 107 (638)
T ss_pred CCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccC--------------------CCcceeEEEeCCCCCHHHHH
Confidence 4457999999999999999999998665443221110000 00001244444532234567
Q ss_pred HHHhCCceeccCCCCCcChHHHHHHH-HHHHHHHHHhhhcccccc--ccccccccccccCCCCCCccccCCCCcCccccc
Q 007591 259 KMLENQVEFGSPDKRSGGFLNSALIA-LFYVAVLAGLLHRFPVSF--SQTAGQVGHRKTRGPGGAKVSEQGDTITFADVA 335 (597)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~~l~~-l~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~dV~ 335 (597)
.+.++++++...+....+++...+.. +++.+++.+++..+.... ....++ ......+............++|+||+
T Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~dv~ 186 (638)
T CHL00176 108 KLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQ-NLMNFGKSKARFQMEADTGITFRDIA 186 (638)
T ss_pred HHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccchhHHHhhcccCCCCCHHhcc
Confidence 78888998876554444444444433 344554444432221111 011111 01112222222223445679999999
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHH
Q 007591 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRD 415 (597)
Q Consensus 336 G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~ 415 (597)
|+++++++|.++++++++++.|..+|...|+++||+||||||||++|+++|+++++||+.+++++|.+.++|.+...+++
T Consensus 187 G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~ 266 (638)
T CHL00176 187 GIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRD 266 (638)
T ss_pred ChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcc
Q 007591 416 LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFD 495 (597)
Q Consensus 416 lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd 495 (597)
+|..|+...||||||||||+++..++.+. .+.+++.++++++||.+||++..+.+++||++||+++.||++++||||||
T Consensus 267 lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd 345 (638)
T CHL00176 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGI-GGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFD 345 (638)
T ss_pred HHHHHhcCCCcEEEEecchhhhhcccCCC-CCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCc
Confidence 99999999999999999999998776432 34678889999999999999998899999999999999999999999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 007591 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 496 ~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (597)
+++.+++|+.++|.+||+.++++ ..+.+++++..+|+.|.||+|+||.++|++|++.|.+++...|+++||++|++++
T Consensus 346 ~~I~v~lPd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 346 RQITVSLPDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred eEEEECCCCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999976 3566788899999999999999999999999999999999999999999999999
Q ss_pred hcchhhhccCCCHHHHhHhhcC
Q 007591 576 IAGIEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 576 i~g~~k~~~~ls~~ek~ivayh 597 (597)
+.|.+++. ..++++|+++|||
T Consensus 424 ~~g~~~~~-~~~~~~~~~vA~h 444 (638)
T CHL00176 424 IAGLEGTP-LEDSKNKRLIAYH 444 (638)
T ss_pred HhhhccCc-cccHHHHHHHHHH
Confidence 99998764 6788999999999
No 8
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.6e-47 Score=435.37 Aligned_cols=384 Identities=49% Similarity=0.738 Sum_probs=313.0
Q ss_pred eeehHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCccceEEEecCCCCCchhHHHHH
Q 007591 182 SVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKML 261 (597)
Q Consensus 182 ~~~y~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 261 (597)
.++|+.|.+.+.++.+.++.+....|.+...++. .|.+..|.+....+..+.
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~----------------------------~~~~~~~~~~~~l~~~l~ 82 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSN----------------------------RYTTYIPVNDPKLLDNLL 82 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCc----------------------------eEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999998887777654431 233433432233456777
Q ss_pred hCCceeccCCCCCcChHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCCCCccccCCCCcCcccccCChHHH
Q 007591 262 ENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAK 341 (597)
Q Consensus 262 ~~~v~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~dV~G~de~k 341 (597)
..++.+...+.....++..++..+.+.+++.+++..+...+... +......+...............+|+|+.|.++++
T Consensus 83 ~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-~~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~ 161 (644)
T PRK10733 83 TKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGG-GGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAK 161 (644)
T ss_pred HcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCceeEEeccccccccCchhhhCcHHHHcCHHHHH
Confidence 88888765544333444444333333333333322111111111 11011111122122223344568899999999999
Q ss_pred HHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHH
Q 007591 342 EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK 421 (597)
Q Consensus 342 ~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~ 421 (597)
++|.++++++..+..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.+.+.|.++..++++|..|+
T Consensus 162 ~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~ 241 (644)
T PRK10733 162 EEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK 241 (644)
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEec
Q 007591 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVE 501 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~ 501 (597)
...||||||||||+++..++.+. .+.+++.+++++++|.+||++..+.+++||+|||+|+.||++++||||||++|.++
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~-~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCC-CCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcC
Confidence 99999999999999998886542 34567889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhh
Q 007591 502 TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEK 581 (597)
Q Consensus 502 ~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~~k 581 (597)
.|+.++|.+||+.|+.+ .++.+++++..+|+.|.||||+||.++|++|+..|.+.++..|++.||++|++++..+.++
T Consensus 321 ~Pd~~~R~~Il~~~~~~--~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 321 LPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhccccc
Confidence 99999999999999975 4677889999999999999999999999999999999999999999999999999999998
Q ss_pred hccCCCHHHHhHhhcC
Q 007591 582 KTAKLKGSEKAVVARQ 597 (597)
Q Consensus 582 ~~~~ls~~ek~ivayh 597 (597)
+...+++++|+.+|||
T Consensus 399 ~~~~~~~~~~~~~a~h 414 (644)
T PRK10733 399 RSMVMTEAQKESTAYH 414 (644)
T ss_pred ccccccHHHHHHHHHH
Confidence 8888999999999998
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-46 Score=411.36 Aligned_cols=251 Identities=40% Similarity=0.657 Sum_probs=228.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
...|+|+|+||.|.+++|.++.+-++. |++|+.|.. |.++..|||||||||||||++|||+|.|+...|+++.++++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 456899999999999999999999998 999998754 888889999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--CCCcEEEEeecCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATNR 480 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--~~~~VIVIaaTNr 480 (597)
.||+|++++.+|++|++|+..+|||||+||+|.|++.|+... .+....++++.|||.|||++. +...|+||+||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG--DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG--DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC--CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 999999999999999999999999999999999999998643 344577899999999999998 4678999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCC-CHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhc
Q 007591 481 SDVLDPALRRPGRFDRVVMVETP-DKIGREAILKVHVSKKELPLAKDIDLGDIASMTT-GFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 481 pd~Ld~aLlRpgRFd~~I~v~~P-d~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~-G~SgaDL~~Lv~eAal~A~r~ 558 (597)
||.|||+|+||||||+.+++.++ |.+.+..+|+...++ +.++++|++.+||+.|+ .|||+|+-.+|..|.+.|+++
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 566677899998876 58899999999999995 699999999999999999886
Q ss_pred -----------------CCccccHHHHHHHHHHHhcch
Q 007591 559 -----------------NKVVVEKIDFIHAVERSIAGI 579 (597)
Q Consensus 559 -----------------~~~~It~~d~~~Al~rvi~g~ 579 (597)
....|+++||.+|+++..+..
T Consensus 899 ~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 899 TIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 134689999999999886654
No 10
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.8e-45 Score=407.77 Aligned_cols=273 Identities=64% Similarity=0.937 Sum_probs=255.8
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
..++.+.++|+||+|++++|++|.++++++++++.|...|.++|+|+||+||||||||++|+++|+++++||+.++++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.+.+.|.+++.++.+|+.|+..+||||||||||.++..++... ...+++..+++++||.+||++..+.+++||+|||++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~-~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL-GGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCc-CCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 9999999999999999999999999999999999998876532 234677889999999999999988899999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.||++++||||||+.|+++.|+.++|.+|++.++.+. ++..++++..+|..|.||+|+||.++|++|+..|.++++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~ 281 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 281 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999764 4557788999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchhhhccCCCHHHHhHhhcC
Q 007591 562 VVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~g~~k~~~~ls~~ek~ivayh 597 (597)
.|+.+||.+|++++..+.++....+++++++.+|||
T Consensus 282 ~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~h 317 (495)
T TIGR01241 282 EITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYH 317 (495)
T ss_pred CCCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 999999999999999998888888999999999998
No 11
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-46 Score=370.67 Aligned_cols=258 Identities=41% Similarity=0.682 Sum_probs=244.9
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
.++.|.+|+.||.|+.++.+.|++.++. +.+|++|..+|+.||+|||+|||||||||++|+|+|+..+.-|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 4778999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
+.+|+|++++.+|++|+.|+....||||+||||++++.|-.. +.+++.+..++.-+|++++|+|.++.++-|+.+||+|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfdd-g~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDD-GAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccC-CCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 999999999999999999999999999999999999888543 2456778899999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.|||+|+||||+|+.++|.+||.+.|..|++.|.+. +.+..++-++.||+.|+.-+|++|+.+|.+|.+.|.+..+.
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999865 57778899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchhhhc
Q 007591 562 VVEKIDFIHAVERSIAGIEKKT 583 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~g~~k~~ 583 (597)
..|+.||.+|+++++.|..+.+
T Consensus 405 ~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999887754
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-45 Score=361.22 Aligned_cols=251 Identities=44% Similarity=0.701 Sum_probs=239.0
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
..+.|.+++.||.|++-.|+++++.++. +.+.+.|.++|+.||+|||||||||||||+||+|+|+.....|+.+.+++|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 4567899999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
+.+|.|++.+.+|++|..|+.++|+||||||||++..+|-+.. .+.+.+..+++-+||++||||....+|-||.+||+.
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaq-tgadrevqril~ellnqmdgfdq~~nvkvimatnra 304 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQ-TGADREVQRILIELLNQMDGFDQTTNVKVIMATNRA 304 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccc-ccccHHHHHHHHHHHHhccCcCcccceEEEEecCcc
Confidence 9999999999999999999999999999999999998885543 456788999999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.|||+|+||||+|+.|+||+||..+++-++.....+ +.+.+++|++.+..+-+..||+||..+|++|.+.|.|.++-
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titsk--m~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry 382 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK--MNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY 382 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc--ccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce
Confidence 9999999999999999999999999999999999976 46789999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHh
Q 007591 562 VVEKIDFIHAVERSI 576 (597)
Q Consensus 562 ~It~~d~~~Al~rvi 576 (597)
.|...||++|...++
T Consensus 383 vvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 383 VVLQKDFEKAYKTVV 397 (408)
T ss_pred eeeHHHHHHHHHhhc
Confidence 999999999998775
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-45 Score=393.29 Aligned_cols=226 Identities=46% Similarity=0.769 Sum_probs=213.5
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
+.++|.||.|++....+|.+++..+++|+.|..+|..||+|||||||||||||+||+|+|+|+++||+.++++++++-+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCC----CcEEEEeecCCCC
Q 007591 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATNRSD 482 (597)
Q Consensus 407 G~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~----~~VIVIaaTNrpd 482 (597)
|++++++|++|++|+..+|||+||||||+++++|.. ++.+--++++.|||+.||++... .+|+||+||||||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999974 23444568899999999987654 6799999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
.|||+|+|+||||+.|.+..|+..+|.+||+..++ ++.++.++++..||+.|+||.|+||..||.+|+..|.++
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~--~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICR--GLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHh--hCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 467888999999999999999999999999999999876
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-44 Score=356.59 Aligned_cols=252 Identities=41% Similarity=0.664 Sum_probs=239.4
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
+..|+.+++=|.|++.+.+++++.++. .++|+.|..+|+..|+|+|||||||||||+||+|+|.+..+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 344678888899999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
.+|.|++.+.+|++|-.|+.++|+|||.||||.++..|.++. .+++.+..++.-+||+++|||+...++-||.|||+.|
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999999987653 4577889999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.|||||+||||+|+.|+||+|+.+.|.+||+.|.++ +.+...+++..+|....|.||+++..+|.+|.+.|.|..+..
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrk--mnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvh 375 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK--MNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVH 375 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh--hchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcc
Confidence 999999999999999999999999999999999976 467788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 007591 563 VEKIDFIHAVERSIAG 578 (597)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (597)
+|++||+-|+.+++..
T Consensus 376 vtqedfemav~kvm~k 391 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQK 391 (404)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 9999999999999753
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-44 Score=358.26 Aligned_cols=253 Identities=38% Similarity=0.646 Sum_probs=239.2
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
..+.|.-+++||.|++.+.++|.+.+-. +.++++|..+|++||+|+|+|||||||||++|+|.|...+..|+.+.++.+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 4567888999999999999999998776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
+.+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|-.+. ..+..+..++.-+||+++|||.++..|-|||+||+.
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 9999999999999999999999999999999999999886542 456788999999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.|||+|+|.||+|+.|+||.|+.+.|..|++.|.++ +...+|+++++||+.|++|+|++...+|-+|.+.|.|++..
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRK--Mnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at 398 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRK--MNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT 398 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhh--cCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc
Confidence 9999999999999999999999999999999999976 46789999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcc
Q 007591 562 VVEKIDFIHAVERSIAG 578 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~g 578 (597)
.|+.+||.+++..+.+.
T Consensus 399 ev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 399 EVTHEDFMEGILEVQAK 415 (424)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999887643
No 16
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=367.51 Aligned_cols=249 Identities=37% Similarity=0.583 Sum_probs=227.3
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
...|.++|+||+|+.++|+.|+|+|-. +.-|+.|.. ..+|.+|||++||||||||+||||||.|++..||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 456789999999999999999999887 788886654 467889999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCC-C---cEEEEeec
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-S---AVIVLGAT 478 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~-~---~VIVIaaT 478 (597)
++|.|++++.||-+|+.|+.++|++|||||||+|+.+|+.. ..++..+++-++||.+|||.... . -|+|+|||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 99999999999999999999999999999999999999853 67888899999999999998653 2 38999999
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 479 Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
|.|+.||+||+| ||...|++++|+.++|.++++..+.. ++++++++++.||+.++||||+||.++|++|.+.+.|+
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999964 68899999999999999999999999999999999985
Q ss_pred -----------------CCccccHHHHHHHHHHHhcchh
Q 007591 559 -----------------NKVVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 559 -----------------~~~~It~~d~~~Al~rvi~g~~ 580 (597)
-+..|++.||++|+.++.....
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 1245889999999999875543
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.8e-43 Score=403.55 Aligned_cols=335 Identities=39% Similarity=0.673 Sum_probs=278.2
Q ss_pred ceEEEecCCCCCchhHH--HHHhCCceeccCCCC---------------------------CcChHHHHHHHHHHHHHHH
Q 007591 242 RIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+.+++++. .+++..+++..|+.. +.||.++++..+|..+.+.
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~ 395 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMA 395 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 35679999999988876 378888888776531 5789999999999988887
Q ss_pred Hhhhccccc---ccc--c----cccc--c------c-cccCCCCCCccccCCCCcCcccccCChHHHHHHHHHHHH-hcC
Q 007591 293 GLLHRFPVS---FSQ--T----AGQV--G------H-RKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRS 353 (597)
Q Consensus 293 ~~~~~~~~~---~~~--~----~~~~--~------~-~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~ 353 (597)
++.+..... ... . .... . . ....++.......+.+.++|+||+|++++|++|++.+.+ +++
T Consensus 396 al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~ 475 (733)
T TIGR01243 396 ALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKH 475 (733)
T ss_pred HHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhC
Confidence 765432210 000 0 0000 0 0 000111112223456789999999999999999999997 899
Q ss_pred hhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCc
Q 007591 354 PDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (597)
Q Consensus 354 p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEI 433 (597)
++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+...|||||||||
T Consensus 476 ~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEi 555 (733)
T TIGR01243 476 PEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEI 555 (733)
T ss_pred HHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 007591 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk 513 (597)
|+|++.++.. ..+...++++++||.+||++....+++||+|||+|+.||++++||||||+.+++++||.++|.+||+
T Consensus 556 d~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 556 DAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 9999887643 2234567899999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC------------------CccccHHHHHHHHHHH
Q 007591 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------------------KVVVEKIDFIHAVERS 575 (597)
Q Consensus 514 ~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~------------------~~~It~~d~~~Al~rv 575 (597)
.+..+ .++.++++++.||..|+||||+||.++|++|++.|.++. ...|+++||.+|++++
T Consensus 633 ~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~ 710 (733)
T TIGR01243 633 IHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKV 710 (733)
T ss_pred HHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHc
Confidence 98864 577889999999999999999999999999999988741 1369999999999988
Q ss_pred hcchhh
Q 007591 576 IAGIEK 581 (597)
Q Consensus 576 i~g~~k 581 (597)
.+...+
T Consensus 711 ~ps~~~ 716 (733)
T TIGR01243 711 KPSVSK 716 (733)
T ss_pred CCCCCH
Confidence 666543
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-44 Score=360.72 Aligned_cols=253 Identities=41% Similarity=0.674 Sum_probs=240.4
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
+..|.-+++|+.|++.+.+++++.++. |.+|+.|..+|++||+||+|||+||||||+||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 456788999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
.+|.|.+.+.+|++|.-|..++|+|+||||||+++.+|-+.. .++..+..+++-+||+++|||+++..|-||.|||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~-SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCC-CccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 999999999999999999999999999999999999886543 4677888999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.|||+|.||||+|+.|.|+.||...++.|+..|..+ +.+.++|+++.+.-.-..+||+||..+|.+|.++|.|..+-.
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMK 413 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999976 578899999999988899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcch
Q 007591 563 VEKIDFIHAVERSIAGI 579 (597)
Q Consensus 563 It~~d~~~Al~rvi~g~ 579 (597)
++++||..|.++++...
T Consensus 414 vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 414 VTMEDFKKAKEKVLYKK 430 (440)
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 99999999999998543
No 19
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.1e-43 Score=349.83 Aligned_cols=242 Identities=39% Similarity=0.615 Sum_probs=221.4
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+..++++|+||+|++++|..-+-++++|.+|++|.. =.|++||+|||||||||++|||+|+++++||+.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 456789999999999999999999999999999855 46899999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
.++|.++++++++|+.|++.+|||+||||+|+++-.|.-. ..-.....++|.||++||+...+.+|+.||+||+|+.
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ---elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ---ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH---HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 9999999999999999999999999999999998766311 1112346789999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH-HHHHHHHHHHHhcCCcc
Q 007591 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA-NLVNEAALLAGRLNKVV 562 (597)
Q Consensus 484 Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~-~Lv~eAal~A~r~~~~~ 562 (597)
||+++++ ||...|+|.+|+.++|.+|++.+++.. |+.-+.+++.++..|.|+||+||. .++..|...|...+++.
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999998 999999999999999999999999775 556667799999999999999985 68888999999999999
Q ss_pred ccHHHHHHHHHHH
Q 007591 563 VEKIDFIHAVERS 575 (597)
Q Consensus 563 It~~d~~~Al~rv 575 (597)
|+.+||+.|+++.
T Consensus 343 v~~edie~al~k~ 355 (368)
T COG1223 343 VEREDIEKALKKE 355 (368)
T ss_pred hhHHHHHHHHHhh
Confidence 9999999999874
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.2e-42 Score=369.08 Aligned_cols=252 Identities=42% Similarity=0.677 Sum_probs=234.5
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
.+.|.++|+||+|++++|++|++.++. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456889999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
..|.|+++..++++|..|+..+||||||||||.++..+.+.. .+.+.+..+++.+++.+|+++....+++||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999987764322 2234566788999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.||++++||||||+.|+|++|+.++|.+|++.++.+ ..+..++++..+|..|+||||+||.++|++|++.|.++++..
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~--~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK--MNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999976 456788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 007591 563 VEKIDFIHAVERSIAG 578 (597)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (597)
|+++||.+|+++++.+
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998765
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-42 Score=380.04 Aligned_cols=299 Identities=44% Similarity=0.651 Sum_probs=257.2
Q ss_pred CcChHHHHHHHHHHHHHHHHhhhcc---ccccccccccccc--cccCCCCCCccccCCCCcCcccccCChHHHHHHHHHH
Q 007591 274 SGGFLNSALIALFYVAVLAGLLHRF---PVSFSQTAGQVGH--RKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIV 348 (597)
Q Consensus 274 ~~~~~~~~l~~l~~~~~l~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv 348 (597)
+.|+.++.+..++-.+.+..+.+.. +.....+...... .....+ ..+....+.++|+|++|++++|+.+++.+
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v 258 (494)
T COG0464 181 TVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAI 258 (494)
T ss_pred cCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHH
Confidence 5788899999999888777766531 1000000000000 001111 23445678899999999999999999999
Q ss_pred HH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeE
Q 007591 349 EF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 427 (597)
Q Consensus 349 ~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~I 427 (597)
++ +++++.|...+.++++|+|||||||||||+||+++|.+++.+|+.+.++++.++|+|++++.++.+|..|+..+|||
T Consensus 259 ~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~i 338 (494)
T COG0464 259 ETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSI 338 (494)
T ss_pred HhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcE
Confidence 99 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHH
Q 007591 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (597)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~e 507 (597)
|||||+|++...++.. .+....+++++++.+|++.....+|+||+|||+|+.+|++++||||||..++|++||.++
T Consensus 339 iFiDEiDs~~~~r~~~----~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 339 IFIDEIDSLASGRGPS----EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred EEEEchhhhhccCCCC----CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 9999999999988643 222337999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-CccccHHHHHHHHHHHhcc
Q 007591 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-KVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 508 R~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-~~~It~~d~~~Al~rvi~g 578 (597)
|.+|++.++.+....+..+++++.+++.|+||+|+||..+|.+|++.+.++. ...|+++||.+|++++...
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 9999999998766667789999999999999999999999999999999988 7889999999999985443
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=8.1e-41 Score=360.27 Aligned_cols=256 Identities=47% Similarity=0.764 Sum_probs=236.3
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
.+.|.++|+||+|+++++++|.+.+.. +.+|+.|..+|..+|+++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 456789999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
..|.|.++..++.+|..|+...||||||||+|.++..+.... .....+..+++.+++.+++++....+++||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999998775432 2234567788999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.+|++++||||||+.|+|++|+.++|.+||+.++.+ +++..++++..+|..|.||+|+||.++|++|++.|.+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~--~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK--MNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999865 466678899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcchhhh
Q 007591 563 VEKIDFIHAVERSIAGIEKK 582 (597)
Q Consensus 563 It~~d~~~Al~rvi~g~~k~ 582 (597)
|+.+||.+|++++..+.++.
T Consensus 360 i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred cCHHHHHHHHHHHhcccccc
Confidence 99999999999998765544
No 23
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=9.3e-41 Score=396.06 Aligned_cols=230 Identities=22% Similarity=0.313 Sum_probs=199.4
Q ss_pred hHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh-----------------------------
Q 007591 355 DKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY----------------------------- 405 (597)
Q Consensus 355 ~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~----------------------------- 405 (597)
..+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 355788999999999999999999999999999999999999999998643
Q ss_pred --------------hccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---C
Q 007591 406 --------------VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---S 468 (597)
Q Consensus 406 --------------vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---~ 468 (597)
++++..+++.+|+.|++++||||||||||+|+... +...++++|+++|++.. .
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCC
Confidence 12233458999999999999999999999998542 23456899999999864 4
Q ss_pred CCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHHHHHhCCCCCHHHHHHH
Q 007591 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDIASMTTGFTGADLANL 547 (597)
Q Consensus 469 ~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl~~LA~~t~G~SgaDL~~L 547 (597)
..+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..++..+++++.++ ++++.+|+.|.||+||||+++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 5689999999999999999999999999999999999999999987765566777654 689999999999999999999
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhccCCCHHHHhHhhcC
Q 007591 548 VNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 548 v~eAal~A~r~~~~~It~~d~~~Al~rvi~g~~k~~~~ls~~ek~ivayh 597 (597)
|++|++.|.++++..|++++|..|+++++.|++.+.. +..++. +|||
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~~-ia~y 1896 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDHG-ILFY 1896 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchhh-hhhh
Confidence 9999999999999999999999999999999876543 334444 4665
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=358.64 Aligned_cols=252 Identities=42% Similarity=0.688 Sum_probs=234.0
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
++.|.++|+||.|+++++++|+++++. +.+|+.|..+|..+|+++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 355789999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
..|.|.++..++.+|..|..+.||||||||||.++..+.... .++..+..+++.+++.+||++....++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 999999999999999999999999999999999998775432 2344566788899999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.||++++||||||+.|+|++||.++|.+||+.++.+ +.+.++++++.++..+.||+|+||.++|++|++.|.++++..
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k--~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK--MTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc--CCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999875 467788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 007591 563 VEKIDFIHAVERSIAG 578 (597)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (597)
|+.+||..|+++++..
T Consensus 412 Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 412 VTQADFRKAKEKVLYR 427 (438)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999998654
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-40 Score=361.86 Aligned_cols=280 Identities=36% Similarity=0.565 Sum_probs=233.8
Q ss_pred CCcChHHHHHHHHHHHHHHHHhhhcccccccc-cccccc-c-cccCCCCCCccc-cCCCCcCcccccCChHHHHHHHHHH
Q 007591 273 RSGGFLNSALIALFYVAVLAGLLHRFPVSFSQ-TAGQVG-H-RKTRGPGGAKVS-EQGDTITFADVAGVDEAKEELEEIV 348 (597)
Q Consensus 273 ~~~~~~~~~l~~l~~~~~l~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~-~~~~~vtf~dV~G~de~k~~L~eiv 348 (597)
.+.||...+|..++--++..+++-+....-.- +.+... . ..+.+..-..+. .....+.|+||+|+.++|+.|++++
T Consensus 604 ~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 604 KTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVI 683 (952)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHH
Confidence 47789888888777666666653221110000 000000 0 000000001111 1123499999999999999999999
Q ss_pred HH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeE
Q 007591 349 EF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 427 (597)
Q Consensus 349 ~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~I 427 (597)
++ -++|..|...+.+.+.|||||||||||||+||-|+|..+++.|+++.++++.++|.|.++..+|++|.+|+..+|||
T Consensus 684 ~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCi 763 (952)
T KOG0735|consen 684 EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCI 763 (952)
T ss_pred hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeE
Confidence 99 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHH
Q 007591 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (597)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~e 507 (597)
||+||+|.++++|+.. +....++++||||++|||.+.-.+|.|+|||.|||.|||||+||||+|+.++.+.|+..+
T Consensus 764 LFFDEfdSiAPkRGhD----sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 764 LFFDEFDSIAPKRGHD----STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred EEeccccccCcccCCC----CCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 9999999999999753 223457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 508 R~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
|.+|++.+... +.+++++|++.+|..|+||||+||..++..|.+.|..+
T Consensus 840 Rl~il~~ls~s--~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 840 RLEILQVLSNS--LLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HHHHHHHHhhc--cCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999865 46788999999999999999999999999999888764
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.7e-38 Score=348.02 Aligned_cols=244 Identities=27% Similarity=0.438 Sum_probs=215.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
+.++|+||+|++.+|+.|++....+ +..+...|.++|+|+|||||||||||++|+++|++++.||+.++++.+.+.++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 5789999999999999999866543 33456678999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCCh
Q 007591 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (597)
Q Consensus 407 G~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~ 486 (597)
|+++..++++|..|+..+||||||||||.+...++.. +......+++++++..|+. .+.+|+||+|||+++.||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999988654321 2344567889999999984 3567999999999999999
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHH
Q 007591 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (597)
Q Consensus 487 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (597)
+++|+||||+.++++.|+.++|.+||+.++.+.......+.+++.||..|.||||+||+++|++|+..|..++ ..++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHH
Confidence 9999999999999999999999999999998754333457889999999999999999999999999998766 458999
Q ss_pred HHHHHHHHHhcc
Q 007591 567 DFIHAVERSIAG 578 (597)
Q Consensus 567 d~~~Al~rvi~g 578 (597)
||..|+.++.+.
T Consensus 455 dl~~a~~~~~Pl 466 (489)
T CHL00195 455 DILLALKQFIPL 466 (489)
T ss_pred HHHHHHHhcCCC
Confidence 999999988753
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=329.49 Aligned_cols=229 Identities=37% Similarity=0.627 Sum_probs=208.5
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
+..+.|+|.|+||+|++.+|+.|+|.|-. ++.|+.|.. +.+|.+|+||||||||||++||+|+|.|++..|++++.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 45678999999999999999999998877 888887764 4567899999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC-CCcEEEEeecC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 479 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~-~~~VIVIaaTN 479 (597)
++++|+|++++.|+++|+.|+.+.|+||||||||.++..|++ +.++..+++-.+||.+|.|... +.+|+|++|||
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 999999999999999999999999999999999999988864 4667788999999999999865 46899999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 480 rpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
-|+.||.|++| ||++.|++|+|+...|..+++.|+......+.+ .|+.+|+++|+||||+||.-+|+.|.+.-.|+
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~-~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTE-QDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccch-hhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999999 999999999999999999999999876555544 48999999999999999999999988876664
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=7.1e-38 Score=334.45 Aligned_cols=249 Identities=50% Similarity=0.779 Sum_probs=229.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
.+.|.++|+||+|+++++++|.+.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 456889999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
..+.|.+...++.+|..++...||||||||+|.++..+.... .....+..+++.+++.+++++....++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765432 2234566788999999999988778999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.+|++++||||||+.|.|+.|+.++|.+|++.++.. ..+.++++++.++..|.||+|+||.++|++|+..|.++++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~--~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK--MKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999865 456677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 007591 563 VEKIDFIHAVERS 575 (597)
Q Consensus 563 It~~d~~~Al~rv 575 (597)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999876
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-38 Score=327.18 Aligned_cols=250 Identities=40% Similarity=0.606 Sum_probs=223.9
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg-~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
....-.++|+||.|+++++++|++.|-. ++.|+.|...+ .++++|||||||||||||++|+|+|+++|.+|+.++++.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 3445679999999999999999999887 99999886333 578999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCc--EEEEeec
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGAT 478 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~--VIVIaaT 478 (597)
+.++|.|++++.++.+|..|.+..||||||||+|.+.+.|+ ...++.....-++|....||+.++.+ |+|++||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999998884 35677888888999999999988765 9999999
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 479 Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
|||..||.|++| |+.++++|+.|+..+|++||+..++.. ++.+++|+..+|..|.||||.||.++|..|++..++.
T Consensus 239 NRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 239 NRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 999999999999 999999999999999999999999765 6679999999999999999999999999999877653
Q ss_pred ----C------------------------CccccHHHHHHHHHHHhcchh
Q 007591 559 ----N------------------------KVVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 559 ----~------------------------~~~It~~d~~~Al~rvi~g~~ 580 (597)
. ...++++||..|..++-....
T Consensus 315 ~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~ 364 (386)
T KOG0737|consen 315 LLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVA 364 (386)
T ss_pred HHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHH
Confidence 1 245777888888887665533
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=323.95 Aligned_cols=249 Identities=42% Similarity=0.667 Sum_probs=233.8
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
....++|+++.|.-++..+|++.++. +.+|..|.++|+++|++++||||||||||++|+++|..++++|+.+..+++++
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 34568999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
.|.|++++.+|+.|..|+...|||||+||||++++.+. ......+.+..++|..|+.+||+++....|-+|+|||+|+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~-se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF-SEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe-ccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999998873 33456778999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 007591 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
|||+|+||||+|+.+.+|.|+...|..|++.|.+. +.....++.+.+.+..+||+|+|+++.|.||...|.+.....+
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~v 361 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEV 361 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeecccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHH
Confidence 99999999999999999999999999999999854 5566778899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHh
Q 007591 564 EKIDFIHAVERSI 576 (597)
Q Consensus 564 t~~d~~~Al~rvi 576 (597)
-++|+..++.++-
T Consensus 362 l~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 362 LHEDFMKLVRKQA 374 (388)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998764
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.8e-35 Score=325.85 Aligned_cols=257 Identities=35% Similarity=0.584 Sum_probs=217.4
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC--------
Q 007591 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------- 392 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------- 392 (597)
+.++.|+++|+||+|++++++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 44667899999999999999999999887 889999999999999999999999999999999999998654
Q ss_pred --eEEeecchhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC
Q 007591 393 --FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 393 --fi~is~se~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~ 466 (597)
|+.++++++..+|+|++++.++.+|+.|+.. .||||||||+|.++..++.+ .+++....++++||.+||++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999998864 69999999999999877532 23444467889999999999
Q ss_pred CCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC---------CCHHHHHH---
Q 007591 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD---------IDLGDIAS--- 534 (597)
Q Consensus 467 ~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d---------vdl~~LA~--- 534 (597)
....+++||+|||+++.||++++||||||..|+|++|+.++|.+||+.++.. .+++.++ .++..++.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999999999999999864 2444211 12222222
Q ss_pred --------------------------hCCCCCHHHHHHHHHHHHHHHHhc----CCccccHHHHHHHHHHHhcchhhh
Q 007591 535 --------------------------MTTGFTGADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAGIEKK 582 (597)
Q Consensus 535 --------------------------~t~G~SgaDL~~Lv~eAal~A~r~----~~~~It~~d~~~Al~rvi~g~~k~ 582 (597)
.++.+||++|.++|.+|...|..+ +...|+.+|+..|++......+.-
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~ 485 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDL 485 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccC
Confidence 245689999999999999888865 456899999999999877554443
No 32
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-34 Score=304.67 Aligned_cols=252 Identities=34% Similarity=0.568 Sum_probs=215.3
Q ss_pred CCCcCccc--ccCChHHHHHH-HH-HHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC-CCeEEeecch
Q 007591 326 GDTITFAD--VAGVDEAKEEL-EE-IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~d--V~G~de~k~~L-~e-iv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg-~pfi~is~se 400 (597)
.|...|++ |.|++..-..+ +. +...+-.|+...++|.+.-+|+|||||||||||++||.|..-++ .+--.+++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46677776 67887654433 33 33346788888999999999999999999999999999999885 4556789999
Q ss_pred hHHHhhccchHHHHHHHHHHHhc--------CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcE
Q 007591 401 FVELYVGMGASRVRDLFARAKKE--------APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~--------~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~V 472 (597)
+.++|+|++++.+|.+|..|... .=.||++||||+++++|+.. .++....++++||||.-|||.+.-.+|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999999642 12399999999999999854 233455678999999999999999999
Q ss_pred EEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007591 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 473 IVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
+||+.|||.|.+|+||+|||||..++++.+||++.|.+|++.|.++. +-.+..++|+++||.+|..|||++|+.+|+.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998763 3457899999999999999999999999999
Q ss_pred HHHHHHhc---------------CCccccHHHHHHHHHHHhcch
Q 007591 551 AALLAGRL---------------NKVVVEKIDFIHAVERSIAGI 579 (597)
Q Consensus 551 Aal~A~r~---------------~~~~It~~d~~~Al~rvi~g~ 579 (597)
|...|..+ .+-.|+++||..|++.+.+..
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 98888764 235689999999999887543
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-33 Score=305.57 Aligned_cols=238 Identities=44% Similarity=0.660 Sum_probs=221.8
Q ss_pred CCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
+.++ +++.|.......+++++++ +.+|..|...|.++|+++|+|||||||||.+++++|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCC
Q 007591 406 VGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~~~-P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~L 484 (597)
.|++++.+|..|+.|.+++ |+||||||+|++++++... .....++..++++.||+..+..+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999988642 224578899999999999999999999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccc
Q 007591 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (597)
Q Consensus 485 d~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It 564 (597)
|++++| ||||+.+.+..|+..+|.+|++.+.++. ++.+++++..+|..|.||.|+||..+|.+|++.+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~--~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKM--NLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhc--CCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 9999999999999999999999999775 4557789999999999999999999999999999887 7
Q ss_pred HHHHHHHHHHHhcc
Q 007591 565 KIDFIHAVERSIAG 578 (597)
Q Consensus 565 ~~d~~~Al~rvi~g 578 (597)
+++|..|...+...
T Consensus 406 ~~~~~~A~~~i~ps 419 (693)
T KOG0730|consen 406 LEIFQEALMGIRPS 419 (693)
T ss_pred HHHHHHHHhcCCch
Confidence 88888888776544
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-33 Score=321.26 Aligned_cols=251 Identities=40% Similarity=0.651 Sum_probs=225.6
Q ss_pred CCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecc
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~s 399 (597)
...++|++|+|++.++.+|+|+|.+ +.+|+.|..+++.||+|||++||||||||+.|+++|..+ .+-|+.-.+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4579999999999999999999988 999999999999999999999999999999999999987 4788888999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
+..++|+|+.++.++.+|+.|++..|+|||+||||-|++.|... .......++..||..|||...++.|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk----qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK----QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch----HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 99999999999999999999999999999999999999888532 44556788999999999999999999999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007591 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 480 rpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
||+.+||+|+||||||+.+++++|+.+.|.+|+..|..+..-++... -+..||..|.||-|+||+.+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~-l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRE-LLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHH-HHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999987654333332 47889999999999999999999999998862
Q ss_pred ----------------CccccHHHHHHHHHHHhcchhh
Q 007591 560 ----------------KVVVEKIDFIHAVERSIAGIEK 581 (597)
Q Consensus 560 ----------------~~~It~~d~~~Al~rvi~g~~k 581 (597)
...|...||-.|..+......+
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 3347778898888887765544
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.8e-32 Score=315.38 Aligned_cols=247 Identities=49% Similarity=0.798 Sum_probs=223.2
Q ss_pred CCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
.+.++|+||+|++++++.|++++.. +.+|+.|..+|..+|+++|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCC
Q 007591 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (597)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~L 484 (597)
+.|..+..++.+|+.|....|+||||||||.+...++.. ..+...+++++|+..|+++.....++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999999876532 2233357889999999999888899999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-----
Q 007591 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN----- 559 (597)
Q Consensus 485 d~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~----- 559 (597)
|++++|+|||++.+.++.|+.++|.+||+.+... +++.++++++.++..|.||+++|+..++++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988854 567778899999999999999999999999998887641
Q ss_pred --------------CccccHHHHHHHHHHHhcc
Q 007591 560 --------------KVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 560 --------------~~~It~~d~~~Al~rvi~g 578 (597)
...++.+||..|+..+...
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhcccc
Confidence 2357889999999876543
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.5e-32 Score=288.18 Aligned_cols=248 Identities=36% Similarity=0.559 Sum_probs=215.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
...+.+.|+|++|++.+|+.+.+++.+ +..|..|..+. .+++++||.||||||||+|++|||.|++..|+.++++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 345679999999999999999999998 66788887653 5678999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC--CCcEEEEeecCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNR 480 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~--~~~VIVIaaTNr 480 (597)
++|+|++++.++.+|.-|+..+|+|+||||||.+..+|.+ ..++...+...++|..+++... +.+|+||+|||+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999998853 3556667888888888887654 458999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc--
Q 007591 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL-- 558 (597)
Q Consensus 481 pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~-- 558 (597)
|+.+|.+++| ||...+++++||.+.|..+|+.++.+.+..+ .+.+++.|++.|+||++.||.++|.+|++.-.+.
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l-~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~ 376 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL-SDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELG 376 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcc
Confidence 9999999999 9999999999999999999999998864444 3457999999999999999999999998654332
Q ss_pred -----------CCccccHHHHHHHHHHHhcch
Q 007591 559 -----------NKVVVEKIDFIHAVERSIAGI 579 (597)
Q Consensus 559 -----------~~~~It~~d~~~Al~rvi~g~ 579 (597)
....|+..||..|++.+....
T Consensus 377 ~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 377 GTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred cchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 234566778999988776543
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=3.7e-31 Score=277.83 Aligned_cols=214 Identities=19% Similarity=0.244 Sum_probs=167.7
Q ss_pred CcCcccc-cCChHHHHHHHHHHHHhcChhHHh-hhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 328 TITFADV-AGVDEAKEELEEIVEFLRSPDKYI-RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 328 ~vtf~dV-~G~de~k~~L~eiv~~l~~p~~~~-~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
..+|+++ .|.--.+.-+..++-.+ .+.|. .++.++|++++||||||||||++|+++|++++++|+.++++++.++|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi--~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHI--AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHH--HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 3456666 55555555555444321 11122 25789999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHh-----cCCeEEEEcCcchhhhhcCCccccccchHHHHHH-HHHHHhhcCC------------C
Q 007591 406 VGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEMDGF------------D 467 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~-----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L-n~LL~emd~~------------~ 467 (597)
+|++++.+|++|..|.. .+||||||||||++++.++.. ......+.+ .+|+++||+. .
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~----~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT----QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC----CcchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 99999999999999975 469999999999999887532 223334555 7899998853 3
Q ss_pred CCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC----CCHHH
Q 007591 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG----FTGAD 543 (597)
Q Consensus 468 ~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G----~SgaD 543 (597)
...+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++.++ + ..++..|+..++| |.|+-
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~-~~dv~~Lv~~f~gq~~Df~GAl 339 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S-REDVVKLVDTFPGQPLDFFGAL 339 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C-HHHHHHHHHcCCCCCchhhhHH
Confidence 4568999999999999999999999999864 589999999999999987544 3 4678899998887 45554
Q ss_pred HHHHHHHHH
Q 007591 544 LANLVNEAA 552 (597)
Q Consensus 544 L~~Lv~eAa 552 (597)
-..+..++.
T Consensus 340 rar~yd~~v 348 (413)
T PLN00020 340 RARVYDDEV 348 (413)
T ss_pred HHHHHHHHH
Confidence 444444443
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=2.3e-22 Score=208.94 Aligned_cols=212 Identities=20% Similarity=0.299 Sum_probs=165.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCC---CeeEEecCCCChHHHHHHHHHHhc-------CCCeEEeecchh
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEF 401 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p---~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~is~se~ 401 (597)
++++|++++|+++++++.++..+..+...|..++ .++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 4799999999999999988777777777776554 358999999999999999999875 237999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
+..++|..+..++.+|+.|. ++||||||+|.+...++ .++.....++.|+..|+... .+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~ 171 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKD 171 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcH
Confidence 99999998888888888874 35999999999965332 12233567788888887543 457788887643
Q ss_pred C-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh------CCCC-CHHHHHHHHH
Q 007591 482 D-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM------TTGF-TGADLANLVN 549 (597)
Q Consensus 482 d-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~------t~G~-SgaDL~~Lv~ 549 (597)
. .++|+|.+ ||+..|.|++|+.+++.+|++.++.+.+..+.++. ...+... .+.| +++++++++.
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 2 34699998 99999999999999999999999998777776653 3333332 1233 4899999999
Q ss_pred HHHHHHHh
Q 007591 550 EAALLAGR 557 (597)
Q Consensus 550 eAal~A~r 557 (597)
.|......
T Consensus 249 ~~~~~~~~ 256 (287)
T CHL00181 249 RARMRQAN 256 (287)
T ss_pred HHHHHHHH
Confidence 98765443
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.90 E-value=2.2e-22 Score=205.83 Aligned_cols=213 Identities=21% Similarity=0.306 Sum_probs=163.5
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCC---CCeeEEecCCCChHHHHHHHHHHhc-------CCCeEEeecc
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~---p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~is~s 399 (597)
.+++++|++++|+++++++.+..........|..+ +.++||+||||||||++|+++|+++ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999999999999876555555566553 3578999999999999999999864 2478999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
++...++|..+..++++|+.+. ++||||||+|.|.... ..+.....++.|+..|+... ..+++|+++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMEDNR--NEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhccC--CCEEEEecCC
Confidence 9999999999999999998875 4699999999996321 12223456788999888653 4456665554
Q ss_pred CC-----CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh---------CCCCCHHHHH
Q 007591 480 RS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM---------TTGFTGADLA 545 (597)
Q Consensus 480 rp-----d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~---------t~G~SgaDL~ 545 (597)
.. ..++|++.+ ||+..+.++.++.+++.+|++.++...+..+.++. +..|+.. ....+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 32 246889988 99989999999999999999999988777676664 4455322 1123788999
Q ss_pred HHHHHHHHHHHh
Q 007591 546 NLVNEAALLAGR 557 (597)
Q Consensus 546 ~Lv~eAal~A~r 557 (597)
|++..|......
T Consensus 229 n~~e~a~~~~~~ 240 (261)
T TIGR02881 229 NIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999988766543
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.9e-22 Score=209.11 Aligned_cols=242 Identities=26% Similarity=0.363 Sum_probs=188.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
.+--|++|+-....+..++.+...-.+... ...+-++||||||||||||++|+-+|...|+.+-.+.+.++... -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 445589999999999999988765444332 33456789999999999999999999999999999999887543 2
Q ss_pred ccchHHHHHHHHHHHhcCCe-EEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC
Q 007591 407 GMGASRVRDLFARAKKEAPS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 407 G~~~~~vr~lF~~A~~~~P~-ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld 485 (597)
..+...+..+|+.+++.... +|||||+|++.-.|.. ...++..+..||.||-.-- +....++++.+||+|..||
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 34556789999999886644 8899999999888764 2456677888999886432 3345788899999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC----------------------CCCCC---CCHHHHHHhCCCCC
Q 007591 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL----------------------PLAKD---IDLGDIASMTTGFT 540 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l----------------------~l~~d---vdl~~LA~~t~G~S 540 (597)
.++-. |||.+|+|++|..+||..+|..++.++-. .+..+ -.+.+.|+.|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99988 99999999999999999999999876411 11111 11556789999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchh
Q 007591 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~~ 580 (597)
|++|..|+--....++-+....++..-|++.++..+...+
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHq 617 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQ 617 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999887665566566667788788877776654443
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=4.4e-22 Score=206.47 Aligned_cols=211 Identities=20% Similarity=0.304 Sum_probs=166.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCC---CCeeEEecCCCChHHHHHHHHHHhcC-------CCeEEeecchhH
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCSASEFV 402 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~---p~gVLL~GPPGTGKT~LAkAIA~elg-------~pfi~is~se~~ 402 (597)
+++|++++|++|.+++.++..+..+.+.|... ..++||+||||||||++|+++|..+. .+|+.+++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 45899999999999999999988762 379999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC-
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp- 481 (597)
..+.|.++..++.+|++|.. +||||||+|.|.+.++. .+.....++.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~------~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc------cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 99999988888999988744 69999999998643321 122345678888888743 3567888887643
Q ss_pred -C---CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh-------CCCCCHHHHHHHHHH
Q 007591 482 -D---VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (597)
Q Consensus 482 -d---~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~-------t~G~SgaDL~~Lv~e 550 (597)
+ .++|+|.+ ||+..|.|++++.+++.+|++.++.+.+..+.++. +..++.+ ..-.++++++|++..
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899999 99999999999999999999999988666665543 4445443 222378999999999
Q ss_pred HHHHHHh
Q 007591 551 AALLAGR 557 (597)
Q Consensus 551 Aal~A~r 557 (597)
|......
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8766543
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1e-21 Score=177.22 Aligned_cols=130 Identities=45% Similarity=0.671 Sum_probs=117.3
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCcccc
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRI 446 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~-P~ILfIDEIDaL~~~r~~~~~~ 446 (597)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+...+.++++|..+.... ||||||||+|.+....+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998888999999999999999888 99999999999998762 2
Q ss_pred ccchHHHHHHHHHHHhhcCCCCC-CcEEEEeecCCCCCCChhhhCCCCcceEEEecC
Q 007591 447 VSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 447 ~~~~e~e~~Ln~LL~emd~~~~~-~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~ 502 (597)
.........++.|+..++..... .+++||++||.++.++++++| +||+..++++.
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 35566778899999999988765 579999999999999999998 89999999874
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.7e-21 Score=204.17 Aligned_cols=207 Identities=28% Similarity=0.372 Sum_probs=161.3
Q ss_pred cCcccccCChHHHHHHHH-HHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhc
Q 007591 329 ITFADVAGVDEAKEELEE-IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~e-iv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG 407 (597)
.+|+-|+-..+.|+.+.+ +.+|++..+-|.+.|..-.+|.|||||||||||+++.|+|++++..++-+..++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 889999999999988876 55668999999999999999999999999999999999999999999988876642
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccc--ccc-hHHHHHHHHHHHhhcCCCCCC--cEEEEeecCCCC
Q 007591 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI--VSN-DEREQTLNQLLTEMDGFDSNS--AVIVLGATNRSD 482 (597)
Q Consensus 408 ~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~--~~~-~e~e~~Ln~LL~emd~~~~~~--~VIVIaaTNrpd 482 (597)
.... ++.++..+... +||+|++||+-...+...... ... ....-++..||+.+||.-+.. .-|||.|||..+
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2223 77777655433 699999999975433221110 001 123468899999999987655 678889999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC--CCHHHHHHH
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG--FTGADLANL 547 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G--~SgaDL~~L 547 (597)
.|||||+||||+|.+|+++.=+..+.+.+++.++.-.. + ..-+++|.+...+ .||||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~-h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---D-HRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---C-cchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999985422 1 2224555544443 489998543
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.85 E-value=3.6e-20 Score=195.55 Aligned_cols=231 Identities=23% Similarity=0.271 Sum_probs=173.9
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
..+.+|++++|+++.++.|..++...+.+ ..++.++||+||||||||++|+++|++++..+..++++.+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 34568999999999999999888754322 24567899999999999999999999999998877765331
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC----------------CC
Q 007591 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SN 469 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~----------------~~ 469 (597)
....+..++... ..++||||||||.+....+ .. +...|+.+. .-
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~------------e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVE------------EI---LYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchHHH------------HH---HHHHHHhcceeeeeccCccccceeecC
Confidence 122344444433 3467999999999853221 11 222232211 11
Q ss_pred CcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 007591 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 470 ~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
.++.+|++||++..++++|++ ||+..+.+++|+.+++.+|++..+...++.+.++. ++.|+..+.| +++.+.++++
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~-~~~ia~~~~G-~pR~a~~~l~ 224 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEG-ALEIARRSRG-TPRIANRLLR 224 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHcCC-CchHHHHHHH
Confidence 347889999999999999988 99989999999999999999999988888877664 8899999987 7799999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHhcchhhhccCCCHHHHhHh
Q 007591 550 EAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVV 594 (597)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~rvi~g~~k~~~~ls~~ek~iv 594 (597)
.+...|...+...|+.+++..+++.. +.....+++.++.++
T Consensus 225 ~~~~~a~~~~~~~I~~~~v~~~l~~~----~~~~~~l~~~~~~~l 265 (328)
T PRK00080 225 RVRDFAQVKGDGVITKEIADKALDML----GVDELGLDEMDRKYL 265 (328)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHh----CCCcCCCCHHHHHHH
Confidence 98888877777789999999999654 222235666555543
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.85 E-value=6.2e-20 Score=190.86 Aligned_cols=211 Identities=23% Similarity=0.321 Sum_probs=160.2
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccc
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~ 409 (597)
+|+|++|++++++.|..++...... ...+.+++|+||||||||+||+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6899999999999999888643221 234567999999999999999999999999887776543211
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC----------------CCCcEE
Q 007591 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSAVI 473 (597)
Q Consensus 410 ~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~----------------~~~~VI 473 (597)
...+...+... ..+.||||||+|.+....+ +.|+..|+... ...+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~---------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE---------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH---------------HHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12223333322 3457999999999864321 12333332211 123478
Q ss_pred EEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007591 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 474 VIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+...++.+.+++ ++.|++.+.| +++.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~a-l~~ia~~~~G-~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEA-ALEIARRSRG-TPRIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHH-HHHHHHHhCC-CcchHHHHHHHHHH
Confidence 99999999999999988 99888999999999999999999987777766653 7889999988 66888999998887
Q ss_pred HHHhcCCccccHHHHHHHHHH
Q 007591 554 LAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~r 574 (597)
.|...+...|+.+++..++..
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 877777778999999999987
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=2.2e-20 Score=185.78 Aligned_cols=196 Identities=25% Similarity=0.342 Sum_probs=136.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+...+-+|+|++|++++++.+.-+++..+.. .....++|||||||+|||+||+.||++++.+|...+++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~- 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE- 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC---
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-
Confidence 3445679999999999999998888764321 23455799999999999999999999999999999886431
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------C-------
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S------- 468 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------~------- 468 (597)
....+..++.... ...||||||||.+.+..+ ..|+..|+.+. +
T Consensus 88 -----k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~q---------------e~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 88 -----KAGDLAAILTNLK--EGDILFIDEIHRLNKAQQ---------------EILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp -----SCHHHHHHHHT----TT-EEEECTCCC--HHHH---------------HHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred -----hHHHHHHHHHhcC--CCcEEEEechhhccHHHH---------------HHHHHHhccCeEEEEeccccccceeec
Confidence 1233344444433 346999999999975543 45666666432 1
Q ss_pred -CCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHH
Q 007591 469 -NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (597)
Q Consensus 469 -~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~L 547 (597)
-.++.+|+||++...|.+.|+. ||..+..+..++.++..+|++......++++.++. ..+||+++.| +|+-..++
T Consensus 146 ~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~-~~~Ia~rsrG-tPRiAnrl 221 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDA-AEEIARRSRG-TPRIANRL 221 (233)
T ss_dssp E----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHH-HHHHHHCTTT-SHHHHHHH
T ss_pred cCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHH-HHHHHHhcCC-ChHHHHHH
Confidence 1358999999999999999988 99988899999999999999988887777777664 7889999988 89999888
Q ss_pred HHHHHH
Q 007591 548 VNEAAL 553 (597)
Q Consensus 548 v~eAal 553 (597)
++++..
T Consensus 222 l~rvrD 227 (233)
T PF05496_consen 222 LRRVRD 227 (233)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 887543
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.1e-20 Score=190.60 Aligned_cols=241 Identities=23% Similarity=0.286 Sum_probs=179.7
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeeEEecCCCChHHHHHHHHHHhcC---------CCeEEeecc
Q 007591 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSAS 399 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg-~~~p~gVLL~GPPGTGKT~LAkAIA~elg---------~pfi~is~s 399 (597)
|+.++--...|+.|-..+.. +...++-..-. +...+-+||+||||||||+|+||+|..+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 56667777788887775543 32222211111 23346699999999999999999999873 467899999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhc---CCe--EEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 400 EFVELYVGMGASRVRDLFARAKKE---APS--IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~---~P~--ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
.+.++|.+++.+.|..+|++.... ..+ .++|||+++|+..|....+.......-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999988652 223 456999999998886544444445567899999999999999999999
Q ss_pred EeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC---CCCCCCC-------------CCHHHHHH-hCC
Q 007591 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---ELPLAKD-------------IDLGDIAS-MTT 537 (597)
Q Consensus 475 IaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~---~l~l~~d-------------vdl~~LA~-~t~ 537 (597)
++|+|-.+.||.|+.. |-|-+.++.+|+...+.+|++..+.+. |+-+... .....++. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999998 999999999999999999999887652 2211111 11222333 358
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (597)
|.||+.|+.|---|...- -....|+.++|..|+-..
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLEA 414 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHHH
Confidence 999999988766543322 233578999888776543
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.2e-18 Score=184.07 Aligned_cols=208 Identities=29% Similarity=0.409 Sum_probs=151.2
Q ss_pred CCCCcCcccccCChHHH---HHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 325 QGDTITFADVAGVDEAK---EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k---~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
...+-+++|++|++... ..|..+++. ....+++||||||||||+||+.||+..+.+|..+++.
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-- 82 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-- 82 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--
Confidence 34567899999999876 345555542 2334699999999999999999999999999999984
Q ss_pred HHHhhccchHHHHHHHHHHHhcC----CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEee
Q 007591 402 VELYVGMGASRVRDLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~----P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaa 477 (597)
-.+.+.++.+++.|++.. ..||||||||.+.+..| ..||-.|+ +..|++|+|
T Consensus 83 -----~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ---------------D~lLp~vE----~G~iilIGA 138 (436)
T COG2256 83 -----TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ---------------DALLPHVE----NGTIILIGA 138 (436)
T ss_pred -----cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh---------------hhhhhhhc----CCeEEEEec
Confidence 346688999999996532 46999999999987665 45666665 677888877
Q ss_pred c--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--CCC-----CCCCCCHHHHHHhCCCCCHHHHHHHH
Q 007591 478 T--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--ELP-----LAKDIDLGDIASMTTGFTGADLANLV 548 (597)
Q Consensus 478 T--Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~--~l~-----l~~dvdl~~LA~~t~G~SgaDL~~Lv 548 (597)
| |....|.++|++++| ++.+.+.+.++..++++..+... ++. ++++ .++.|+..+.| .++-+.|++
T Consensus 139 TTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~-a~~~l~~~s~G-D~R~aLN~L 213 (436)
T COG2256 139 TTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEE-ALDYLVRLSNG-DARRALNLL 213 (436)
T ss_pred cCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHH-HHHHHHHhcCc-hHHHHHHHH
Confidence 7 666899999999544 88999999999999999844433 333 2232 36777888876 444455555
Q ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 007591 549 NEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 549 ~eAal~A~r~~~~~It~~d~~~Al~rvi~ 577 (597)
..++..+. .+. .++.+++.+.+.+...
T Consensus 214 E~~~~~~~-~~~-~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 214 ELAALSAE-PDE-VLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHhcC-CCc-ccCHHHHHHHHhhhhh
Confidence 55554442 222 3447777777776543
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.2e-18 Score=192.73 Aligned_cols=233 Identities=24% Similarity=0.242 Sum_probs=180.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC----CCeEEeecchhHHHhhc
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVELYVG 407 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg----~pfi~is~se~~~~~vG 407 (597)
.|++-..++|++..+ ....| +..+.++||+||+|+|||.||++++.++. +.+..++|+.+......
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 456666666655444 22222 34566899999999999999999999874 55677899988777666
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhh-cCCCC-CCcEEEEeecCCCCCCC
Q 007591 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-DGFDS-NSAVIVLGATNRSDVLD 485 (597)
Q Consensus 408 ~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~em-d~~~~-~~~VIVIaaTNrpd~Ld 485 (597)
...+.++.+|..|..++|+||++|++|.|....+. ..+......+.++.++..+ +.+.. +..+.+||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 77788999999999999999999999999873322 1344455566666666433 33333 44578999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc----CCc
Q 007591 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL----NKV 561 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~----~~~ 561 (597)
+.|.+|++|+.++.++.|+..+|.+||+..+++....... -|++.++..|+||...||..++.+|...|... +..
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~-~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITM-DDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhh-HHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999875322222 25677999999999999999999999888732 334
Q ss_pred cccHHHHHHHHHHHhc
Q 007591 562 VVEKIDFIHAVERSIA 577 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~ 577 (597)
.+|.++|.++++...+
T Consensus 635 lltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVP 650 (952)
T ss_pred cchHHHHHHHHHhcCh
Confidence 8999999999988653
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.6e-18 Score=175.89 Aligned_cols=217 Identities=22% Similarity=0.278 Sum_probs=173.8
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
..+-+|+|.+|++++|+.|+-++...+. ......++|||||||.|||+||+.+|+|+|+++-..+++-+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 3467899999999999999998876433 2356678999999999999999999999999999998876522
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------C--------C
Q 007591 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S--------N 469 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------~--------~ 469 (597)
+..+-.++..... .+||||||||++.+... .-|.-.|+.|. + -
T Consensus 91 ----~gDlaaiLt~Le~--~DVLFIDEIHrl~~~vE---------------E~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 91 ----PGDLAAILTNLEE--GDVLFIDEIHRLSPAVE---------------EVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----hhhHHHHHhcCCc--CCeEEEehhhhcChhHH---------------HHhhhhhhheeEEEEEccCCccceEeccC
Confidence 2333344443333 36999999999975432 22334455431 1 2
Q ss_pred CcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 007591 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 470 ~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
.++.+|+||.+...|...|+. ||.....+..++.++..+|+.......++.+.++ ...+||+++.| +++-..+|++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChH-HHHHHHHhccC-CcHHHHHHHH
Confidence 468999999999999999988 9999999999999999999999988777777766 47789999988 8999999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHh
Q 007591 550 EAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~rvi 576 (597)
+....|.-++...|+.+-..+|++...
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHhC
Confidence 999999989999999988888887653
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=3e-18 Score=198.76 Aligned_cols=224 Identities=23% Similarity=0.280 Sum_probs=167.6
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEe
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~i 396 (597)
.+-++++++|.++..+.+.+++. .+...+++|+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 34578899999987776555442 2335579999999999999999999986 6778999
Q ss_pred ecchhH--HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 397 SASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
+++.+. ..|.|+.+.+++.+|+.+....|+||||||||.|.+..... .+..+ .-+.|+..|. +..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~----~~~~L~~~l~----~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD----ASNLLKPALS----SGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH----HHHHHHHHHh----CCCeEE
Confidence 988887 47889999999999999988889999999999998654321 11111 1233444443 567899
Q ss_pred EeecCCC-----CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCC-----C
Q 007591 475 LGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGF-----T 540 (597)
Q Consensus 475 IaaTNrp-----d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~----~~l~l~~dvdl~~LA~~t~G~-----S 540 (597)
|++||.. ..+|++|.| ||. .|.++.|+.+++.+||+..... .++.+.++ .+..++..+..| -
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~-al~~~~~ls~ryi~~r~~ 390 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDE-ALEAAVELSARYINDRFL 390 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHH-HHHHHHHhhhcccccccC
Confidence 9999864 357999999 997 7999999999999999977654 23344444 366777766554 3
Q ss_pred HHHHHHHHHHHHHHHHhc----CCccccHHHHHHHHHHHh
Q 007591 541 GADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~----~~~~It~~d~~~Al~rvi 576 (597)
|.....++++|+..+..+ .+..|+.+|+..++.+..
T Consensus 391 P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 391 PDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 556678888887654332 245699999999998865
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.79 E-value=1.8e-18 Score=193.76 Aligned_cols=218 Identities=24% Similarity=0.302 Sum_probs=156.0
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CC
Q 007591 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EV 391 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~ 391 (597)
..+...+.+|++++|+++..+.|+..+. ...+.++||+||||||||++|++++.++ +.
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~ 122 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGA 122 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCC
Confidence 3455567899999999999888875431 2335679999999999999999998642 46
Q ss_pred CeEEeecchh-------HHHhhccch----------------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccccc
Q 007591 392 PFISCSASEF-------VELYVGMGA----------------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVS 448 (597)
Q Consensus 392 pfi~is~se~-------~~~~vG~~~----------------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~ 448 (597)
+|+.++|... .+...+... ..-..++..| ...+|||||||.|....+
T Consensus 123 ~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~q------- 192 (531)
T TIGR02902 123 AFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQM------- 192 (531)
T ss_pred CEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHHH-------
Confidence 8999988631 111111100 0001122222 235999999999875433
Q ss_pred chHHHHHHHHHHHhhcCC--------------------------CCCCc-EEEEeecCCCCCCChhhhCCCCcceEEEec
Q 007591 449 NDEREQTLNQLLTEMDGF--------------------------DSNSA-VIVLGATNRSDVLDPALRRPGRFDRVVMVE 501 (597)
Q Consensus 449 ~~e~e~~Ln~LL~emd~~--------------------------~~~~~-VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~ 501 (597)
+.|+..|+.. .-... .+|++||+.|+.|++++++ |+. .+.++
T Consensus 193 --------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~ 261 (531)
T TIGR02902 193 --------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFR 261 (531)
T ss_pred --------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCC
Confidence 3444433210 00122 4455666789999999998 775 78899
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 007591 502 TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 502 ~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (597)
+++.+++.+|++..+++.++.+.+++ ++.|+..+. +++++.++++.|+..|..+++..|+.+|+++++...
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 99999999999999988887776664 777777664 799999999999999988888899999999998643
No 53
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.5e-18 Score=187.67 Aligned_cols=219 Identities=47% Similarity=0.700 Sum_probs=196.0
Q ss_pred hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEE
Q 007591 351 LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 351 l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfI 430 (597)
+..+..+..++..++++++++||||||||++++++|.+ +..++.+++++...++.|..+...+.+|..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 35677788899999999999999999999999999999 77668899999999999999999999999999999999999
Q ss_pred cCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH
Q 007591 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ 510 (597)
||+|.+.+.+.. ........++.+++..|+++. ...+++++.+|++..+++++++|+||+..+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988764 234455788899999999998 444899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC------CccccHHHHHHHHHHHhc
Q 007591 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------KVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~------~~~It~~d~~~Al~rvi~ 577 (597)
|+..+... +.+..+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 158 i~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 158 ILQIHTRL--MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHhc--CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99999854 456667889999999999999999999999988888775 456889999999998754
No 54
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.9e-18 Score=189.49 Aligned_cols=206 Identities=27% Similarity=0.431 Sum_probs=172.4
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~ 441 (597)
......+||+|+||||||++++++|.++|.+++.++|.+++....+..+.++..+|.+|+...|+|||+-++|.++.+++
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 34455799999999999999999999999999999999999999999999999999999999999999999999985554
Q ss_pred CccccccchHHHHHHHHHHHhhcCCC-CCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC
Q 007591 442 GRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE 520 (597)
Q Consensus 442 ~~~~~~~~~e~e~~Ln~LL~emd~~~-~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~ 520 (597)
+ +..-..-+.+++++. .|.+. +..+++||++|+..+.|++.+++ -|-..|.++.|+.++|.+||+.++..
T Consensus 508 g----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~-- 578 (953)
T KOG0736|consen 508 G----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNH-- 578 (953)
T ss_pred C----chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhc--
Confidence 3 233344455555555 34443 56789999999999999999988 77789999999999999999999976
Q ss_pred CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc--------------------CCccccHHHHHHHHHHHh
Q 007591 521 LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL--------------------NKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 521 l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~--------------------~~~~It~~d~~~Al~rvi 576 (597)
+.+..++.+..+|++|.||+.+|+..++..+-..+..+ ....++++||..|+.+..
T Consensus 579 ~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~ 654 (953)
T KOG0736|consen 579 LPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQ 654 (953)
T ss_pred cccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHH
Confidence 46788899999999999999999999988763333221 126799999999998654
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.76 E-value=1.6e-17 Score=182.71 Aligned_cols=225 Identities=20% Similarity=0.263 Sum_probs=155.4
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecch
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se 400 (597)
.+..+|++.+..+.....+..+......| ......++||||||||||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 36678999553334333333333333332 1233569999999999999999999987 56789999998
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
|...+..........-|..... .+++|+|||+|.+..... +...++..++........+||+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER-------------TQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 8776544322211222332222 467999999999853321 11222222222222334466666666
Q ss_pred CCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 481 pd~---Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
|.. ++++|.+ ||. ..+.+.+|+.++|.+|++..+...++.+++++ ++.||....| +.++|..+++.....|
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHHHHH
Confidence 644 6788887 885 58999999999999999999988788888876 8999999976 8999999999987777
Q ss_pred HhcCCccccHHHHHHHHHHHh
Q 007591 556 GRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi 576 (597)
...+ ..||.+.+.+++....
T Consensus 331 ~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 331 SLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HhhC-CCCCHHHHHHHHHHhh
Confidence 6554 4589999999988764
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=3.8e-17 Score=178.98 Aligned_cols=205 Identities=17% Similarity=0.223 Sum_probs=154.0
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-----------
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (597)
....+-+|+||+|++.+...|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 344678899999999999998887753 2345669999999999999999999988652
Q ss_pred -------------eEEeecchhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccchHHHHH
Q 007591 393 -------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 393 -------------fi~is~se~~~~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~ 455 (597)
++.+++. ...+...++++.+.+. .....|+||||+|.|.. ..
T Consensus 79 ~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A 137 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QS 137 (484)
T ss_pred cHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HH
Confidence 2222211 1123445666666554 23456999999999853 35
Q ss_pred HHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 007591 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (597)
Q Consensus 456 Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 535 (597)
.|.||..|+. +...+++|.+|+.++.|.+.+++ |.. .+.|.+++.++..+.++..+...++.+.++ .+..||+.
T Consensus 138 ~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~ 211 (484)
T PRK14956 138 FNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKK 211 (484)
T ss_pred HHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 6888988874 34578888899889999999998 653 789999999999999999998888777666 48899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.| +.|+..+++..+...+ ...|+.+++.+.
T Consensus 212 S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~ 242 (484)
T PRK14956 212 GDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKM 242 (484)
T ss_pred cCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHH
Confidence 987 8899999988766432 224677665443
No 57
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.9e-17 Score=180.28 Aligned_cols=206 Identities=19% Similarity=0.237 Sum_probs=151.8
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------- 391 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~------------- 391 (597)
...+.+|+|++|++++++.|+.++.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 34567899999999998888877652 245667999999999999999999998764
Q ss_pred -----------CeEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 392 -----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 392 -----------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
.++.++++. ..+...++.+.+.+.. ....||||||+|.|.. ..+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~ 134 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAF 134 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHH
Confidence 244444321 1233456666665542 2346999999999853 234
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
+.|+..|+... ..+++|++|+.+..+++++.+ |+. .+.+.+++.++...+++..+...++.+.+++ ++.|+..+
T Consensus 135 ~~LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~ea-l~~Ia~~s 208 (472)
T PRK14962 135 NALLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREA-LSFIAKRA 208 (472)
T ss_pred HHHHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHh
Confidence 67788877433 456777777778899999998 664 8999999999999999999988788877664 88899988
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
.| +.+++.+.+..++..+ + ..||.+++.+++.
T Consensus 209 ~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 209 SG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred CC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 66 6777777776655432 2 2489998887764
No 58
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=1e-17 Score=195.41 Aligned_cols=164 Identities=28% Similarity=0.392 Sum_probs=126.0
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH---------
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--------- 402 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~--------- 402 (597)
++++|++++|+.+.+.+...... +...+..+||+||||||||++|+++|++++.+|+.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35999999999999876642211 112334799999999999999999999999999999765432
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC-----CC--------CC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~-----~~--------~~ 469 (597)
..|+|.....+.+.|..+....| ||||||||.+.+..++. ..+.|+..||. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24667777788888888877767 89999999998543211 12445555542 11 12
Q ss_pred CcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHH
Q 007591 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (597)
Q Consensus 470 ~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l 516 (597)
+++++|+|||..+.++++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999999 995 88999999999999998876
No 59
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.75 E-value=5.1e-17 Score=176.28 Aligned_cols=223 Identities=21% Similarity=0.307 Sum_probs=150.5
Q ss_pred CCCcCccc-ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecc
Q 007591 326 GDTITFAD-VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (597)
Q Consensus 326 ~~~vtf~d-V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~s 399 (597)
.+..+|++ ++|.+ .......+......| ......++||||||+|||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~-n~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKS-NRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCc-HHHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 35678999 55543 332333333333332 1234569999999999999999999976 6789999998
Q ss_pred hhHHHhhccchH-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 400 EFVELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 400 e~~~~~vG~~~~-~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
+|...+...... .+..+.+..+ .+.+|+|||+|.+..... .. ..++..++....+...+||+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~----------~~---~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKER----------TQ---EEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHH----------HH---HHHHHHHHHHHHCCCCEEEecC
Confidence 887655432111 1222222222 256999999998863321 11 2222222222223344666666
Q ss_pred CCCC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007591 479 NRSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 479 Nrpd---~Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
..|. .+++.+.+ ||. ..+.+++||.++|.+|++..+...++.+++++ ++.||....+ +.++|..+++....
T Consensus 241 ~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 241 RPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV-LEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred CCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 6664 45678877 885 57999999999999999999998888887775 8999998876 89999999998877
Q ss_pred HHHhcCCccccHHHHHHHHHHHh
Q 007591 554 LAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~rvi 576 (597)
.|...+ ..||.+.+.+++....
T Consensus 317 ~a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 317 YASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHHhC-CCCCHHHHHHHHHHhc
Confidence 775544 4588888888877654
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=99.74 E-value=6.6e-17 Score=179.33 Aligned_cols=208 Identities=23% Similarity=0.271 Sum_probs=150.8
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
..+.+|+||+|++++++.|...+....+ ..+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 4567899999999999999998865432 2457889999999999999999999999999999998875321
Q ss_pred hccchHHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 406 VGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~------~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
..++.+...+.. ..+.||+|||+|.+....+ ...++.|+..++. .+..+|+++|
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~~----~~~~iIli~n 138 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIKK----AKQPIILTAN 138 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHHc----CCCCEEEecc
Confidence 233333333322 2467999999999864221 1234556666652 2234556778
Q ss_pred CCCCCCh-hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 480 RSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 480 rpd~Ld~-aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
.+..+.+ .|++ ....|.|++|+..++..+++.++...++.+.++ .++.|+..+.| |++.+++.....+ .
T Consensus 139 ~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a--~ 208 (482)
T PRK04195 139 DPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA--E 208 (482)
T ss_pred CccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh--c
Confidence 8877776 5554 345899999999999999999998888887766 48888988765 7777777665533 3
Q ss_pred CCccccHHHHHHHH
Q 007591 559 NKVVVEKIDFIHAV 572 (597)
Q Consensus 559 ~~~~It~~d~~~Al 572 (597)
+...|+.+++....
T Consensus 209 ~~~~it~~~v~~~~ 222 (482)
T PRK04195 209 GYGKLTLEDVKTLG 222 (482)
T ss_pred CCCCCcHHHHHHhh
Confidence 44567777775444
No 61
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=5.9e-17 Score=187.31 Aligned_cols=224 Identities=21% Similarity=0.273 Sum_probs=159.1
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEeec
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSA 398 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is~ 398 (597)
-.++.++|.++....+.+++.. +.+.++||+||||||||++|+++|... +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3466799999876666665542 234578999999999999999999864 455566665
Q ss_pred chhH--HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEe
Q 007591 399 SEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (597)
Q Consensus 399 se~~--~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIa 476 (597)
..++ ..|.|+.+.+++.+|..+....++||||||||.|.+.+... ++......++..+ + .+..+.||+
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~---~g~~d~~nlLkp~---L----~~g~i~vIg 320 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVDAANLIKPL---L----SSGKIRVIG 320 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---CcHHHHHHHHHHH---H----hCCCeEEEe
Confidence 5555 45788889999999999988888999999999998654321 1112222222222 2 256799999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----CCCCCCCCHHHHHHhC-----CCCCHH
Q 007591 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIASMT-----TGFTGA 542 (597)
Q Consensus 477 aTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~----l~l~~dvdl~~LA~~t-----~G~Sga 542 (597)
+|+.++ .+|++|.| ||+ .|.|+.|+.+++.+||+.+..++. +.+.++. +...+..+ ..+-|.
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~a-l~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKA-VRAAVELAVKYINDRHLPD 396 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHH-HHHHHHHhhccccCccChH
Confidence 999875 57999999 997 799999999999999998765532 2232221 33333322 334567
Q ss_pred HHHHHHHHHHHHHH----hcCCccccHHHHHHHHHHHhcc
Q 007591 543 DLANLVNEAALLAG----RLNKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 543 DL~~Lv~eAal~A~----r~~~~~It~~d~~~Al~rvi~g 578 (597)
....++++|+.... ...+..|+.+|+.+.+.+...-
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCC
Confidence 89999999986542 2234568999999998876543
No 62
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.74 E-value=2.9e-16 Score=167.06 Aligned_cols=243 Identities=23% Similarity=0.225 Sum_probs=163.5
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC---------CCeEEeec
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSA 398 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg---------~pfi~is~ 398 (597)
....++++|.++..++|...+..... ...+.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34456899999988888887764221 23456799999999999999999998652 57888888
Q ss_pred chhHH----------Hhh--cc-------c-hHHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 399 SEFVE----------LYV--GM-------G-ASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 399 se~~~----------~~v--G~-------~-~~~vr~lF~~A~-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
....+ ... |. . ......++.... ...+.||+|||+|.+.... ...+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~ 150 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLY 150 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHH
Confidence 64322 111 11 1 122344444443 3457799999999997221 12455
Q ss_pred HHHHhhcC-CCCCCcEEEEeecCCCC---CCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhc--CCCCCCCCCCHH
Q 007591 458 QLLTEMDG-FDSNSAVIVLGATNRSD---VLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLG 530 (597)
Q Consensus 458 ~LL~emd~-~~~~~~VIVIaaTNrpd---~Ld~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~--~~l~l~~dvdl~ 530 (597)
+|+...+. ..++.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++.. ....+.+++ ++
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~-l~ 227 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV-IP 227 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH-HH
Confidence 55554221 12236788899998885 57888877 674 67999999999999999999862 111233332 33
Q ss_pred HH---HHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhccCCCHHHHhHh
Q 007591 531 DI---ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAVV 594 (597)
Q Consensus 531 ~L---A~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~-~k~~~~ls~~ek~iv 594 (597)
.+ +..+.| ..+.+.++|..|+..|..++...|+.+|+..|++...... .+.-..++..++.++
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l 294 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVL 294 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 43 344445 6778888999999999988889999999999998764332 222346777776543
No 63
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.74 E-value=4.4e-16 Score=167.50 Aligned_cols=244 Identities=21% Similarity=0.215 Sum_probs=166.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecchhH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV 402 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se~~ 402 (597)
....+.++|.++..++|...+..... ...+.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34556799999988888777753211 2345679999999999999999999876 5788999886432
Q ss_pred H----------Hhhc-------cchH-HHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhh
Q 007591 403 E----------LYVG-------MGAS-RVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 403 ~----------~~vG-------~~~~-~vr~lF~~A~-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~em 463 (597)
+ ...+ .... .+..+.+... ...+.||+|||+|.+....+ ...+..|+..+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhh
Confidence 1 1111 0111 2222333322 24568999999999972211 23566776666
Q ss_pred cCCCCCCcEEEEeecCCC---CCCChhhhCCCCc-ceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCC
Q 007591 464 DGFDSNSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 464 d~~~~~~~VIVIaaTNrp---d~Ld~aLlRpgRF-d~~I~v~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA~~t~ 537 (597)
+.... .++.+|+++|.. +.+++.+.+ || ...|.+++++.++..+|++.++... ...+.++ .++.+++.+.
T Consensus 167 ~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~ 242 (394)
T PRK00411 167 EEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE-VLDLIADLTA 242 (394)
T ss_pred hccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh-HHHHHHHHHH
Confidence 55432 368888888776 356777766 55 3578999999999999999988642 1123333 3677777773
Q ss_pred C--CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhccCCCHHHHhHh
Q 007591 538 G--FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAVV 594 (597)
Q Consensus 538 G--~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~-~k~~~~ls~~ek~iv 594 (597)
+ ...+.+.++|..|+..|..++...|+.+|+..|+++..... ...-..|+..+|.++
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L 302 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLL 302 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3 24567778999999999999999999999999999874333 233457888887764
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.8e-16 Score=169.98 Aligned_cols=212 Identities=18% Similarity=0.215 Sum_probs=150.6
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEE-------e-
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-------C- 396 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~-------i- 396 (597)
...+.+|+||+|++++++.|+..+.. .+.|+.+||+||||+|||++|+++|+++.+.... +
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567899999999999999887752 2456678999999999999999999987642100 0
Q ss_pred ecch--------hHHHh--hccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh
Q 007591 397 SASE--------FVELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 397 s~se--------~~~~~--vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e 462 (597)
+|.+ +.... .......++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk~ 142 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLKT 142 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHHH
Confidence 1111 11000 01233456666665542 2345999999998852 234678888
Q ss_pred hcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007591 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 md~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+..+ ..+.+|.+|+.++.+.+.+.+ |+ ..+.+++|+.++..++++..++..++.+.++ .++.++..+.| +++
T Consensus 143 lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~R 215 (363)
T PRK14961 143 LEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SMR 215 (363)
T ss_pred HhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 87543 345666677778889889887 65 4789999999999999999998877666655 47888988876 888
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 007591 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
++.++++.++.. +...|+.+++.+++.
T Consensus 216 ~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 216 DALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 888888877543 345688888777653
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.73 E-value=1.2e-16 Score=173.97 Aligned_cols=202 Identities=29% Similarity=0.416 Sum_probs=148.5
Q ss_pred CCcCcccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 327 DTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~---L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
.+.+|+|++|++++... |.+++.. ..+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 45779999999998666 6666642 223479999999999999999999999999999987532
Q ss_pred HhhccchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec-
Q 007591 404 LYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT- 478 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT- 478 (597)
+...++.+++.+. .....||||||+|.+.... .+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~---------------q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ---------------QDALLPHVED----GTITLIGATT 128 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH---------------HHHHHHHhhc----CcEEEEEeCC
Confidence 3345666776664 2356799999999886332 2456666652 456666665
Q ss_pred -CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--CC-CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 479 -NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--EL-PLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 479 -Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~--~l-~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
|....+++++++ |+ ..+.+++++.++...+++..+... ++ .+.++ .++.|++.+.| ..+.+.+++..++..
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s~G-d~R~aln~Le~~~~~ 203 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLANG-DARRALNLLELAALG 203 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334588999998 76 589999999999999999887642 33 44444 36778888855 778888888776644
Q ss_pred HHhcCCccccHHHHHHHHHHHh
Q 007591 555 AGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi 576 (597)
...|+.+++.+++....
T Consensus 204 -----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 -----VDSITLELLEEALQKRA 220 (413)
T ss_pred -----cCCCCHHHHHHHHhhhh
Confidence 45689999888887643
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.9e-16 Score=177.99 Aligned_cols=203 Identities=20% Similarity=0.231 Sum_probs=151.7
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC--------------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 391 (597)
..+.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 4567899999999999999888762 345678999999999999999999998865
Q ss_pred ----------CeEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 392 ----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 392 ----------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
.++.+++++ ..+...+|.+...+.. ....|++|||+|.|.. ...+
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~N 136 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFN 136 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHH
Confidence 223333221 1234557777765532 3456999999998853 2457
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+... ..+.+|.+|+.+..+.+.+++ |. .++.|.+++.++..+.++..+.+.++.+.++ .+..|++.+.
T Consensus 137 ALLKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e-AL~~IA~~S~ 210 (702)
T PRK14960 137 ALLKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD-AIWQIAESAQ 210 (702)
T ss_pred HHHHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 7888888543 455666677778888888877 55 3899999999999999999998888777666 4888999987
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
| +.+++.+++..+... +...|+.+++...
T Consensus 211 G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 211 G-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 6 888988888876543 3456777776553
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=8e-17 Score=180.70 Aligned_cols=196 Identities=18% Similarity=0.267 Sum_probs=145.7
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC------------C
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------P 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~------------p 392 (597)
...+.+|+||+|++++++.|.+++.. .+.++.+||+||+|||||++|+.+|+.+++ |
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 34567899999999999999988863 244567899999999999999999998875 1
Q ss_pred eEEe-ecc--------hhHHHh--hccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 393 FISC-SAS--------EFVELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 fi~i-s~s--------e~~~~~--vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
+-.| +|. ++++.- ...+...++++.+.+.. ....|+||||+|.|.. ...|
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaN 142 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFN 142 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHH
Confidence 1111 111 111100 01234567777776543 3457999999999853 3458
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.||+.|+. +..++++|.+||.++.|.+.+++ |. .++.|..++.++..+.++.++.+.++.+.++ .++.|++.+.
T Consensus 143 ALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A~ 216 (700)
T PRK12323 143 AMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAAQ 216 (700)
T ss_pred HHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 89999885 33567888888889999999998 54 3889999999999999999888777666544 3788899988
Q ss_pred CCCHHHHHHHHHHHHH
Q 007591 538 GFTGADLANLVNEAAL 553 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal 553 (597)
| +.++..+++..+..
T Consensus 217 G-s~RdALsLLdQaia 231 (700)
T PRK12323 217 G-SMRDALSLTDQAIA 231 (700)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 89999999887664
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=2.8e-16 Score=174.55 Aligned_cols=215 Identities=19% Similarity=0.265 Sum_probs=157.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCe----------
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------- 393 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf---------- 393 (597)
....+-+|+|++|++.+.+.|+..+.. .+.+.++||+||||||||++|+++|+.+++.-
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 344678899999999999988886642 34567899999999999999999999886521
Q ss_pred -EEe-ecchhH--------HHh--hccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 394 -ISC-SASEFV--------ELY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 394 -i~i-s~se~~--------~~~--vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
..+ +|..+. +.. ...+...++++++.+... ...|++|||+|.|.. ..++
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~n 146 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFN 146 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHH
Confidence 111 111111 100 112456788888877532 346999999998852 3457
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+. +...+++|.+|+.++.+.+.+++ |. ..+.+.+++.++..++++..+++.++.+.++ .++.|++.+.
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s~ 220 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKSE 220 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 78888874 34566777778888889999987 55 4789999999999999999999888777655 4888999987
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
| +.+++.++++.++..+... ...||.+++.+.+
T Consensus 221 G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 221 G-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 7 8999999999887665322 2357877766554
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.2e-16 Score=181.24 Aligned_cols=191 Identities=18% Similarity=0.238 Sum_probs=146.5
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------ 392 (597)
...+-+|+||+|++++++.|+..++. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 34567899999999999999988752 2456678999999999999999999988642
Q ss_pred ------------eEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
++.++..+ ..+...++++++.+.. ....|+||||+|.|.. ...
T Consensus 78 sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~ 136 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAF 136 (830)
T ss_pred HHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHH
Confidence 22222211 1234557777776643 2356999999999853 245
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
|.||+.|+.. ..++++|.+||.+..|.+.|++ |. .++.|..++.++..++|+..+...++.+.++ .+..|++.+
T Consensus 137 NALLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A 210 (830)
T PRK07003 137 NAMLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAA 210 (830)
T ss_pred HHHHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888854 3467888888889999999988 55 4899999999999999999998877777655 488899999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 007591 537 TGFTGADLANLVNEAALL 554 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~ 554 (597)
.| +.++..+++..+...
T Consensus 211 ~G-smRdALsLLdQAia~ 227 (830)
T PRK07003 211 QG-SMRDALSLTDQAIAY 227 (830)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 87 788988888877644
No 70
>PRK06893 DNA replication initiation factor; Validated
Probab=99.72 E-value=3.8e-16 Score=157.17 Aligned_cols=212 Identities=12% Similarity=0.131 Sum_probs=140.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
.+..+|+++++.+... .+..+.... . ......++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~------~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNF------I---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHh------h---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3568899999776532 222222111 1 1122358999999999999999999985 3455555543221
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
.. ...+++... ...+|+|||++.+.... +.+..+..++..+. .....++|++++..|.
T Consensus 80 ~~--------~~~~~~~~~--~~dlLilDDi~~~~~~~----------~~~~~l~~l~n~~~--~~~~~illits~~~p~ 137 (229)
T PRK06893 80 YF--------SPAVLENLE--QQDLVCLDDLQAVIGNE----------EWELAIFDLFNRIK--EQGKTLLLISADCSPH 137 (229)
T ss_pred hh--------hHHHHhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHH--HcCCcEEEEeCCCChH
Confidence 11 112233322 34699999999875321 22334444444432 1123355666666676
Q ss_pred CCC---hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007591 483 VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 483 ~Ld---~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
.++ +.|.++.+++..+.++.|+.++|.+|++..+...++.+++++ ++.|+++..| +.+.+.++++.....+. ..
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~ 214 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASL-QA 214 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH-hc
Confidence 554 888885566789999999999999999999988888888876 8899999986 88999999987654344 33
Q ss_pred CccccHHHHHHHH
Q 007591 560 KVVVEKIDFIHAV 572 (597)
Q Consensus 560 ~~~It~~d~~~Al 572 (597)
+..||...+.+++
T Consensus 215 ~~~it~~~v~~~L 227 (229)
T PRK06893 215 QRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCHHHHHHHh
Confidence 3469998888775
No 71
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=1.4e-16 Score=174.93 Aligned_cols=225 Identities=15% Similarity=0.231 Sum_probs=154.4
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecch
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se 400 (597)
.+..+|++.+--+........+.....+|. ...+++||||||+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 467899997744444444444444433331 13469999999999999999999975 46788999998
Q ss_pred hHHHhhccch-HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 401 FVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 401 ~~~~~vG~~~-~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
|...+..... ..+.. |.......+.+|+|||++.+..... .. ..++..++.+......+||++.+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~----------~q---~elf~~~n~l~~~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG----------VQ---TELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH----------HH---HHHHHHHHHHHHcCCeEEEECCC
Confidence 8776543211 12222 3333334578999999998753211 01 11222222222233456666666
Q ss_pred CCCC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 480 RSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 480 rpd~---Ld~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
.|.. +++.+.+ || ...+.+++||.+.|.+|++..+...++.+++++ ++.||....| +.++|..+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6654 4567777 66 568899999999999999999988788888776 8999999876 899999999987766
Q ss_pred HHhcCCccccHHHHHHHHHHHhc
Q 007591 555 AGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi~ 577 (597)
+...+ ..||.+...+++...+.
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHhc
Confidence 65544 45898888888877643
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.4e-16 Score=175.60 Aligned_cols=205 Identities=17% Similarity=0.193 Sum_probs=152.5
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------ 392 (597)
...+-+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 34567899999999999999988863 2445678999999999999999999988653
Q ss_pred ------------eEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
++.+++.. ..+...+|++.+.+.. ....|++|||+|.|.. ...
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~ 136 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSF 136 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHH
Confidence 33333321 2344557777766542 3346999999999863 235
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
|.|+..|+..+ ..+++|.+|+.+..+.+.+++ |. ..+.+.+++.++..+.++..+.+.++.+.++ .+..|++.+
T Consensus 137 naLLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~~s 210 (509)
T PRK14958 137 NALLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLARAA 210 (509)
T ss_pred HHHHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 78888888544 346666677778888888887 54 3788999999999999999998888777655 478889888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.| +.+++.+++..++.. +...|+.+++.+.+
T Consensus 211 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 211 NG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred CC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 76 889999999877543 34567777766544
No 73
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.3e-16 Score=171.33 Aligned_cols=202 Identities=18% Similarity=0.224 Sum_probs=154.9
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC---------------
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------------- 391 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~--------------- 391 (597)
.+.+|+||+|++.+++.|+..+.. .+.|+++||+||+|+|||++|+.+|+.+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 567899999999999988877652 355778999999999999999999986532
Q ss_pred ---------CeEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHH
Q 007591 392 ---------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 392 ---------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~ 458 (597)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.|.. ..+|.
T Consensus 77 ~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~Na 135 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNA 135 (491)
T ss_pred HHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHH
Confidence 334444431 1244668888877753 2356999999998852 34588
Q ss_pred HHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007591 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 459 LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (597)
|+..|+..+ ..+++|.+|+.++.+.+.+++ |. ..+.+.+++.++..+.++..+.+.++.+.++ .++.|++.+.|
T Consensus 136 LLK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e-AL~lIa~~s~G 209 (491)
T PRK14964 136 LLKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE-SLKLIAENSSG 209 (491)
T ss_pred HHHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 899988544 456677777778889899988 55 3789999999999999999998888877766 48889999976
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.+++.++++.++..+. ..||.+++.+.
T Consensus 210 -slR~alslLdqli~y~~----~~It~e~V~~l 237 (491)
T PRK14964 210 -SMRNALFLLEQAAIYSN----NKISEKSVRDL 237 (491)
T ss_pred -CHHHHHHHHHHHHHhcC----CCCCHHHHHHH
Confidence 88999999988776542 36788777664
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=5.3e-16 Score=175.91 Aligned_cols=203 Identities=21% Similarity=0.258 Sum_probs=149.8
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------- 392 (597)
..+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 3567899999999999999888763 2345668999999999999999999988652
Q ss_pred -----------eEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
++.+++.+ ..+...+|++.+.+.. +...|+||||+|.|.. ...|
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~N 137 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFN 137 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHH
Confidence 12222211 1233456777666542 3456999999999863 3458
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.||+.|+.. ...+++|.+|+.+..|.+.+++ |. ..+.|.+++.++..+.|+..+...++.+.++ .+..|+..+.
T Consensus 138 ALLKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~-aL~~Ia~~s~ 211 (647)
T PRK07994 138 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR-ALQLLARAAD 211 (647)
T ss_pred HHHHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 899999853 3456677778888899999988 63 5899999999999999999988777766544 4788899888
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
| +.+++.+++..|... +...|+.+++...
T Consensus 212 G-s~R~Al~lldqaia~----~~~~it~~~v~~~ 240 (647)
T PRK07994 212 G-SMRDALSLTDQAIAS----GNGQVTTDDVSAM 240 (647)
T ss_pred C-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 7 889999998776533 2234666555543
No 75
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.70 E-value=4.3e-16 Score=154.66 Aligned_cols=206 Identities=17% Similarity=0.229 Sum_probs=139.5
Q ss_pred CCcCcccccC--ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~G--~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
...+|++.+. ...+.+.|++++. ...+.+++|+||||||||++|++++.++ +.+++++++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3467777763 4445555555542 1345689999999999999999999876 578999999887
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.... .+++.... .+.+|+|||+|.+.... +....+..++..+.. ....+|++++..+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~~---~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP----------EWQEALFHLYNRVRE---AGGRLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHHH---cCCeEEEECCCCh
Confidence 5432 23333222 23599999999885321 111233334333321 2234455444444
Q ss_pred CCCC---hhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007591 482 DVLD---PALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 482 d~Ld---~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
..++ +.|.+ |+ ..++.+++|+.+++..+++.++.+.++.+.+++ ++.|+...+ .+.+++.++++++...+.
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~~~-gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHGS-RDMGSLMALLDALDRASL 210 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 3332 66776 55 578999999999999999998877777777764 788888755 499999999999876555
Q ss_pred hcCCccccHHHHHHHH
Q 007591 557 RLNKVVVEKIDFIHAV 572 (597)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (597)
. +...|+.+.+.+.+
T Consensus 211 ~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 A-AKRKITIPFVKEVL 225 (226)
T ss_pred H-hCCCCCHHHHHHHh
Confidence 5 44579988877765
No 76
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=5.9e-16 Score=173.75 Aligned_cols=226 Identities=19% Similarity=0.222 Sum_probs=152.7
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecch
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se 400 (597)
.+..+|++++.-+........+.....++. ...+.++|||++|+|||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 357899998744433322222222222221 122349999999999999999999976 57889999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
|...+.........+.|.+.. ..+++|+||||+.+..+.. .+..+-.+++.+. .+.+-+||++...
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~----------tqeeLF~l~N~l~---e~gk~IIITSd~~ 420 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES----------TQEEFFHTFNTLH---NANKQIVLSSDRP 420 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH----------HHHHHHHHHHHHH---hcCCCEEEecCCC
Confidence 987765433222223344322 2467999999998863321 1122223333332 2233355544433
Q ss_pred C---CCCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 481 S---DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 481 p---d~Ld~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
| ..+++.|.+ || ...+.+..||.+.|.+||+.++...++.+.+++ ++.|+.+..+ +.++|..+++.....|
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 4 357888988 77 677899999999999999999999999888876 8899998875 8999999999876666
Q ss_pred HhcCCccccHHHHHHHHHHHhc
Q 007591 556 GRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi~ 577 (597)
...+ ..|+.+.++++++..+.
T Consensus 497 ~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 497 SLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HhhC-CCCCHHHHHHHHHHhhc
Confidence 5544 45888888888776544
No 77
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=8.1e-16 Score=177.40 Aligned_cols=195 Identities=21% Similarity=0.254 Sum_probs=142.6
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------eEEee
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS 397 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------fi~is 397 (597)
...+.+|+||+|++.+++.|+.++.. .+.+..+||+||||||||++|+++|+.+++. +..|+
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 44568899999999999999888753 2456668999999999999999999998653 11111
Q ss_pred -cchhHHH-------hh---ccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh
Q 007591 398 -ASEFVEL-------YV---GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 398 -~se~~~~-------~v---G~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e 462 (597)
|-.+... +- ..+...+|.+.+.+.. +...|+||||+|.|.. ...|.||..
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------eAqNALLKt 142 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------SSFNALLKT 142 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHH
Confidence 1111100 00 1223456766665542 3346999999999853 456889999
Q ss_pred hcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007591 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 md~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+... ..+++|++|+.+..|.+.|++ |. .++.|.+++.++..+.|+..+...++.+.++ .+..|++.+.| +.|
T Consensus 143 LEEPP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d~R 215 (944)
T PRK14949 143 LEEPP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-SMR 215 (944)
T ss_pred HhccC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 98543 455666678778888888888 54 4899999999999999999988766666554 48889999887 889
Q ss_pred HHHHHHHHHH
Q 007591 543 DLANLVNEAA 552 (597)
Q Consensus 543 DL~~Lv~eAa 552 (597)
++.+++..+.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 9999998766
No 78
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.70 E-value=1.4e-15 Score=159.72 Aligned_cols=209 Identities=19% Similarity=0.223 Sum_probs=139.6
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC-----CCeEEeecch
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg-----~pfi~is~se 400 (597)
..+.+|++++|++++++.|..++.. ....++||+||||||||++|+++++++. .+++++++++
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 3567799999999999998887652 1123699999999999999999999873 4678888877
Q ss_pred hHHHh-------------hcc-------chHHHHHHHHHHHh-----cCCeEEEEcCcchhhhhcCCccccccchHHHHH
Q 007591 401 FVELY-------------VGM-------GASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 401 ~~~~~-------------vG~-------~~~~vr~lF~~A~~-----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~ 455 (597)
+.... .+. ....++.+...... ..+.+|+|||+|.+... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---------------~ 141 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---------------A 141 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH---------------H
Confidence 64321 011 11233333333322 22459999999987421 1
Q ss_pred HHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 007591 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (597)
Q Consensus 456 Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 535 (597)
.+.|+..|+..... .. +|.+++.+..+.+.|.+ |. ..+.+.+|+.++..++++..+.+.++.+.++ .++.|+..
T Consensus 142 ~~~L~~~le~~~~~-~~-~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~~~ 215 (337)
T PRK12402 142 QQALRRIMEQYSRT-CR-FIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIAYY 215 (337)
T ss_pred HHHHHHHHHhccCC-Ce-EEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 23455555544332 33 44455556667777877 54 4789999999999999999998888877665 48888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 007591 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
+.| +.+++.+.+.. .+. ....||.+++.+++.
T Consensus 216 ~~g-dlr~l~~~l~~---~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 216 AGG-DLRKAILTLQT---AAL--AAGEITMEAAYEALG 247 (337)
T ss_pred cCC-CHHHHHHHHHH---HHH--cCCCCCHHHHHHHhC
Confidence 854 55555544443 332 223688888877654
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=9.3e-16 Score=170.66 Aligned_cols=204 Identities=21% Similarity=0.262 Sum_probs=150.7
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------ 392 (597)
...+.+|+||+|++++++.|+.++.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 34678899999999999999988763 2455668999999999999999999987531
Q ss_pred -----------eEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
++.+++++ ..+...++++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~n 134 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAFN 134 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHHH
Confidence 33333221 1234456776555543 346699999999764 23467
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+... ..+++|.+|+.+..+.+.+.+ |.. .+.|.+|+.++..+.++..+.+.++.+.++ .++.|++.+.
T Consensus 135 aLLk~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~s~ 208 (504)
T PRK14963 135 ALLKTLEEPP--EHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARLAD 208 (504)
T ss_pred HHHHHHHhCC--CCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 8888887533 356777778888899999988 543 799999999999999999998888777655 4888999887
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
| +.+++.++++.+... ...||.+++.+.+
T Consensus 209 G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 209 G-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred C-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 6 777888887776432 2368877766653
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=99.69 E-value=6.1e-16 Score=162.86 Aligned_cols=201 Identities=19% Similarity=0.194 Sum_probs=139.3
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC-----CCeEEeecc
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg-----~pfi~is~s 399 (597)
...+.+|+|++|++++.+.|+.++.. ... .++||+||||||||++|+++|+++. ..++.++++
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 34567899999999999998887652 122 2599999999999999999999872 345666665
Q ss_pred hhHHHhhccchHHHHHHHHHHHh-------cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcE
Q 007591 400 EFVELYVGMGASRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~-------~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~V 472 (597)
+... ...+++.+..... ..+.|++|||+|.+.... .+.|+..|+.+... .
T Consensus 74 d~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a---------------q~aL~~~lE~~~~~--t 130 (319)
T PLN03025 74 DDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA---------------QQALRRTMEIYSNT--T 130 (319)
T ss_pred cccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH---------------HHHHHHHHhcccCC--c
Confidence 4321 2234444332211 235799999999986432 25566666644433 3
Q ss_pred EEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 007591 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (597)
Q Consensus 473 IVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 552 (597)
.+|.+||.+..+.++|++ |. ..+.|++|+.++....++..+++.++.+.++. ++.|+..+.| +.+.+.+.++.+.
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~-l~~i~~~~~g-DlR~aln~Lq~~~ 205 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEG-LEAIIFTADG-DMRQALNNLQATH 205 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 455577778888889988 54 37899999999999999999998888887764 8888888865 5555555555222
Q ss_pred HHHHhcCCccccHHHHHH
Q 007591 553 LLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 553 l~A~r~~~~~It~~d~~~ 570 (597)
. +...|+.+++.+
T Consensus 206 ---~--~~~~i~~~~v~~ 218 (319)
T PLN03025 206 ---S--GFGFVNQENVFK 218 (319)
T ss_pred ---h--cCCCCCHHHHHH
Confidence 1 234566666543
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=6.9e-16 Score=174.81 Aligned_cols=211 Identities=19% Similarity=0.272 Sum_probs=153.3
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCe-------EEee
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISCS 397 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf-------i~is 397 (597)
...+-+|+||+|++.+++.|+..+.. .+.++++||+||+|||||++|+++|++++++- -.+.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 34567899999999999999988763 35567899999999999999999999876431 1110
Q ss_pred -cc--------hhHHH--hhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh
Q 007591 398 -AS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 398 -~s--------e~~~~--~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e 462 (597)
|. ++.+. ....+...++++++.+.. ....||||||+|.|.. ...|.||..
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLKt 142 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLKT 142 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHHH
Confidence 00 11000 012334567888776542 3346999999998742 345788888
Q ss_pred hcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007591 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 md~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++..+.|+..+...++.+.++ .+..|++.+.| +.+
T Consensus 143 LEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-slR 215 (709)
T PRK08691 143 LEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SMR 215 (709)
T ss_pred HHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CHH
Confidence 88543 456667777888888888876 65 3678889999999999999999888777665 48889999876 899
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
++.+++..++.. +...|+.+++...+
T Consensus 216 dAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 216 DALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 999999887654 23457777666554
No 82
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=7.7e-16 Score=169.05 Aligned_cols=231 Identities=18% Similarity=0.201 Sum_probs=150.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
.+..||++.+--+........+......+. ..+....++++||||+|+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 467899997632333222222222222211 0111233579999999999999999999875 6889999998876
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC-
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp- 481 (597)
..+.......-...|.... ..+++|+|||++.+.+... ..++.-.++|.+.. ....+|++++..|
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~------~qeelf~l~N~l~~-------~~k~IIlts~~~p~ 247 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA------TQEEFFHTFNSLHT-------EGKLIVISSTCAPQ 247 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh------hHHHHHHHHHHHHH-------CCCcEEEecCCCHH
Confidence 6544322111122344333 3456999999998853221 12233333333332 2334666555555
Q ss_pred --CCCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH-HH
Q 007591 482 --DVLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL-AG 556 (597)
Q Consensus 482 --d~Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~-A~ 556 (597)
..++++|.+ ||. ..+.+.+|+.++|.+|++..+...++.+++++ ++.|+....+ +.++|.+.++..+.. |.
T Consensus 248 ~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~~a~ 323 (445)
T PRK12422 248 DLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKRVAY 323 (445)
T ss_pred HHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 356788888 884 78999999999999999999998888887775 8888888875 788999888887532 22
Q ss_pred hc-CCccccHHHHHHHHHHHhc
Q 007591 557 RL-NKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 557 r~-~~~~It~~d~~~Al~rvi~ 577 (597)
.. ....|+.+++.+++...+.
T Consensus 324 ~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 324 KKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHhhCCCCCHHHHHHHHHHhhh
Confidence 21 3356899999999887643
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=5.2e-16 Score=182.21 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=155.3
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEe
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~i 396 (597)
.+-++++++|.++. ++.+++.+.. +...+++|+||||||||++|+.+|..+ +..++.+
T Consensus 182 r~~~ld~~iGr~~e---i~~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDE---IRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHH---HHHHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 45678899999986 5555544322 234579999999999999999999875 2457777
Q ss_pred ecchhH--HHhhccchHHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE
Q 007591 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI 473 (597)
+...+. ..+.|+.+.+++.+|+.+.. ..++||||||||.+.+.++.. +..+ .-|.|+-.|. +..+.
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d----~~n~Lkp~l~----~G~l~ 318 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD----AANLLKPALA----RGELR 318 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc----HHHHhhHHhh----CCCeE
Confidence 777665 35788889999999999875 468899999999998654321 1112 1133333333 56799
Q ss_pred EEeecCCC-----CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhCCCCC----
Q 007591 474 VLGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGFT---- 540 (597)
Q Consensus 474 VIaaTNrp-----d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~~t~G~S---- 540 (597)
+|+||+.. -.+|++|.| ||. .|.|+.|+.+++.+||+.+.... ++.+.++ .+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~-al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDE-AVVAAVELSHRYIPGRQ 394 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHH-HHHHHHHHccccccccc
Confidence 99999864 358999999 996 89999999999999987665432 3444444 4777888777663
Q ss_pred -HHHHHHHHHHHHHHHHh-cCCccccHHHHHHHH
Q 007591 541 -GADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (597)
Q Consensus 541 -gaDL~~Lv~eAal~A~r-~~~~~It~~d~~~Al 572 (597)
|.....++++|+..... .....+..+++.+.+
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 46778899998765543 233444444444433
No 84
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.5e-15 Score=171.07 Aligned_cols=203 Identities=22% Similarity=0.262 Sum_probs=152.4
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------- 391 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~------------- 391 (597)
...+.+|+||+|++++++.|+..+.. .+.++.+||+||+|||||++|+.+|+.+++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 34567899999999999999988763 245667999999999999999999998753
Q ss_pred -----------CeEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 392 -----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 392 -----------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
.++.+++. .+.+...++++.+.+.. ....|++|||+|.|.. ...
T Consensus 78 ~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~ 136 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAF 136 (559)
T ss_pred HHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHH
Confidence 22333321 12345668888887653 2346999999998852 346
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
|.|+..|+.. ...+++|.+|+.++.+.+.+++ |.. .+.|.+|+.++....++..+.+.++.+.++ .+..|+..+
T Consensus 137 naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~s 210 (559)
T PRK05563 137 NALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARAA 210 (559)
T ss_pred HHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 8888888753 3456777677788999999987 654 688999999999999999998888877655 478889888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (597)
.| +.+++.+++..+...+ ...|+.+++.+
T Consensus 211 ~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~ 239 (559)
T PRK05563 211 EG-GMRDALSILDQAISFG----DGKVTYEDALE 239 (559)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 76 8888888888776542 34577665544
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.68 E-value=1.2e-15 Score=161.59 Aligned_cols=205 Identities=20% Similarity=0.266 Sum_probs=150.5
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------ 392 (597)
..++.+|+|++|++++++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+..+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34568899999999999999887752 2456679999999999999999999986432
Q ss_pred ------------eEEeecchhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
++.+++.+ ..+...++++++.+... ...||+|||+|.+.. ...
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~ 134 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAF 134 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHH
Confidence 22222211 12334577777776542 235999999998742 245
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
+.|+..++..+ ..+++|.+|+.++.+.+.+.+ |+ ..+.+++|+.++..++++.++++.++.++++ .+..|+..+
T Consensus 135 ~~Ll~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~~ 208 (355)
T TIGR02397 135 NALLKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARAA 208 (355)
T ss_pred HHHHHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 77888887533 456667777888888888887 66 4789999999999999999998888777655 477788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.| +++.+.+.++.+...+ ...|+.+++.+++
T Consensus 209 ~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 209 DG-SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred CC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 66 7788888877766543 2348888776654
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.68 E-value=1.6e-15 Score=151.65 Aligned_cols=202 Identities=16% Similarity=0.198 Sum_probs=138.0
Q ss_pred CCcCcccccC--ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 327 DTITFADVAG--VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~G--~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
++.+|+++++ ..++...++++.. +.....+++|+||+|||||+||+++++++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 4578888773 3444445544433 12345679999999999999999999875 678888988776
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCc-EEEEeecCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~-VIVIaaTNr 480 (597)
.... . ......+|+|||+|.+.... ...+..++..+ ..... +++++++..
T Consensus 82 ~~~~------------~--~~~~~~~liiDdi~~l~~~~------------~~~L~~~~~~~---~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 82 LLAF------------D--FDPEAELYAVDDVERLDDAQ------------QIALFNLFNRV---RAHGQGALLVAGPAA 132 (227)
T ss_pred HHHH------------h--hcccCCEEEEeChhhcCchH------------HHHHHHHHHHH---HHcCCcEEEEeCCCC
Confidence 4321 1 12235699999999874221 12233333333 22333 344444433
Q ss_pred C--CCCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007591 481 S--DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 481 p--d~Ld~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
+ ..+.+.|.+ || ...+.+++|+.+++..+++.++.+.++.+++++ ++.|+...+| +.+++.++++.....|.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~a-l~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEV-PDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 3 235577776 66 579999999999999999988888888887774 8889987665 99999999998655554
Q ss_pred hcCCccccHHHHHHHHH
Q 007591 557 RLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 557 r~~~~~It~~d~~~Al~ 573 (597)
. .+..||...+.+++.
T Consensus 209 ~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 E-QKRPVTLPLLREMLA 224 (227)
T ss_pred H-hCCCCCHHHHHHHHh
Confidence 4 446899888887764
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.9e-15 Score=171.08 Aligned_cols=210 Identities=16% Similarity=0.232 Sum_probs=150.4
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------e
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------F 393 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------f 393 (597)
..+-+|+||+|++.+++.|..++.. .+.+..+||+||+|||||++|+++|+.+++. +
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3567899999999999999988763 2445668999999999999999999987641 1
Q ss_pred EEe-ecc--------hhHHHh--hccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHHH
Q 007591 394 ISC-SAS--------EFVELY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 394 i~i-s~s--------e~~~~~--vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~ 458 (597)
-.| +|. ++.+.- ...+...+|++.+.+... ...|++|||+|.|.. ...|.
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~Na 143 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAFNA 143 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHHHH
Confidence 011 111 111110 012345677777765432 245999999999863 23578
Q ss_pred HHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007591 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 459 LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (597)
|+..|+.. ...+++|.+|+.+..+.+.+++ |. .++.|..++.++..+.++..+.+.++.+.++ .+..|++.+.|
T Consensus 144 LLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s~G 217 (618)
T PRK14951 144 MLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAARG 217 (618)
T ss_pred HHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 88888853 3456666677778888888887 54 4899999999999999999998888877655 48889998887
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
+.+++.+++..+... +...|+.+++.+.+
T Consensus 218 -slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 218 -SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888998888776654 23457766665443
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=8.9e-16 Score=176.86 Aligned_cols=209 Identities=22% Similarity=0.307 Sum_probs=146.8
Q ss_pred cCCCCcCcccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 324 EQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~---L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
+...+-+|+|++|+++.... |+.++. . ....++||+||||||||++|+++|+..+.+|+.+++..
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~---~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIK---A---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHh---c---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 33456889999999998754 444443 1 12346999999999999999999999999999888753
Q ss_pred hHHHhhccchHHHHHHHHHHH-----hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEE
Q 007591 401 FVELYVGMGASRVRDLFARAK-----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~-----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVI 475 (597)
. +.+.++..+..+. .....||||||||.+.... .+.|+..++ +..+++|
T Consensus 88 ~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q---------------QdaLL~~lE----~g~IiLI 141 (725)
T PRK13341 88 A-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ---------------QDALLPWVE----NGTITLI 141 (725)
T ss_pred h-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH---------------HHHHHHHhc----CceEEEE
Confidence 1 1223444444442 1345699999999986432 244555554 3457777
Q ss_pred eecCC--CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCCCCCCCCHHHHHHhCCCCCHHHHHH
Q 007591 476 GATNR--SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLAN 546 (597)
Q Consensus 476 aaTNr--pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~-------~~~l~l~~dvdl~~LA~~t~G~SgaDL~~ 546 (597)
++|+. ...+++++++ |. ..+.+++++.+++..+++..+. ..++.+++++ ++.|++.+.| +.+++.+
T Consensus 142 ~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~dea-L~~La~~s~G-D~R~lln 216 (725)
T PRK13341 142 GATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEA-EKHLVDVANG-DARSLLN 216 (725)
T ss_pred EecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHH-HHHHHHhCCC-CHHHHHH
Confidence 66633 3578899988 53 3789999999999999999887 3345565553 7888988865 7889999
Q ss_pred HHHHHHHHHHhcC--CccccHHHHHHHHHHH
Q 007591 547 LVNEAALLAGRLN--KVVVEKIDFIHAVERS 575 (597)
Q Consensus 547 Lv~eAal~A~r~~--~~~It~~d~~~Al~rv 575 (597)
+++.|+..+.... ...|+.+++.+++.+.
T Consensus 217 ~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 217 ALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 9888775443222 2347888888887664
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.67 E-value=3.6e-15 Score=150.75 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=137.6
Q ss_pred CCcCccccc-C-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 327 DTITFADVA-G-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~-G-~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
+..+|++.+ | ...+...++.+.. . .....++|+||||||||+|++++++++ +..+.+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456788876 4 4444444444432 1 123479999999999999999999875 344556655543
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCc-EEEEeecCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~-VIVIaaTNr 480 (597)
... ..++++.... ..+|+|||+|.+.... ..+..+-.++..+- .+.+ .+++++++.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~----------~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE----------LWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH----------HHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 221 1122222222 2489999999885322 22333444443332 1232 356666666
Q ss_pred CCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 481 pd~---Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
|.. +.+.|++ |+. .++.+.+|+.+++.++++.++...++.+++++ ++.|+++..| +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 654 5789988 774 78999999999999999998888888888886 8999999987 8999999999864333
Q ss_pred HhcCCccccHHHHHHHH
Q 007591 556 GRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al 572 (597)
. ..+..||.+.+.+++
T Consensus 218 l-~~~~~it~~~~k~~l 233 (235)
T PRK08084 218 I-TAQRKLTIPFVKEIL 233 (235)
T ss_pred H-hcCCCCCHHHHHHHH
Confidence 3 334559988888775
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.4e-15 Score=168.47 Aligned_cols=210 Identities=19% Similarity=0.248 Sum_probs=150.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------eEEee-
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS- 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------fi~is- 397 (597)
..+.+|+||+|++++++.|...+.. .+.++.+||+||||+|||++|+++|+.+++. +-.|.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3457899999999999999888763 2445678999999999999999999988652 11110
Q ss_pred cc--------hhHHH--hhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhh
Q 007591 398 AS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~s--------e~~~~--~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~em 463 (597)
|. ++... ....+...++++.+.+.. ....|++|||+|.|.. ...|.||..|
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~L 143 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKTL 143 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHHH
Confidence 00 11000 001234567777777643 2346999999998853 3457899988
Q ss_pred cCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007591 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 d~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+.. ...+++|.+|+.+..+.+.+++ |. ..+.|..++.++..+.+...+.+.++.+.++ .+..|++.+.| +.++
T Consensus 144 Eep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-slr~ 216 (527)
T PRK14969 144 EEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SMRD 216 (527)
T ss_pred hCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 863 3456666677777777777877 54 4889999999999999999888777766544 47888888876 8899
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 544 LANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
+.+++..+... +...|+.+++.+.+
T Consensus 217 al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 217 ALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 99998887654 34567877776654
No 91
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.3e-15 Score=165.42 Aligned_cols=204 Identities=21% Similarity=0.276 Sum_probs=147.9
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC--------------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 391 (597)
..+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+++
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3567899999999999998887753 245567999999999999999999998754
Q ss_pred ----------CeEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 392 ----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 392 ----------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
.++.+++. ...+...++.+++.+.. ....|++|||+|.+.. ...+
T Consensus 79 C~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~n 137 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFN 137 (546)
T ss_pred HHHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHH
Confidence 12222221 01223455666665542 3456999999998853 3457
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.||..|+..+ ..+++|++|+.+..+.+.+++ |. ..++|.+++.++....++..+.+.++.+.++ .+..|+..+.
T Consensus 138 aLLK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~s~ 211 (546)
T PRK14957 138 ALLKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYHAK 211 (546)
T ss_pred HHHHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 8888888533 445566666667878878887 54 4899999999999999999888777766554 4788888886
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
| +.+++.++++.++.... ..|+.+++.+++
T Consensus 212 G-dlR~alnlLek~i~~~~----~~It~~~V~~~l 241 (546)
T PRK14957 212 G-SLRDALSLLDQAISFCG----GELKQAQIKQML 241 (546)
T ss_pred C-CHHHHHHHHHHHHHhcc----CCCCHHHHHHHH
Confidence 5 88888888888775432 457777777643
No 92
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.8e-15 Score=167.91 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=147.5
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------ 392 (597)
...+.+|+||+|++.+++.|..++.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 34678899999999999999988763 2345679999999999999999999988652
Q ss_pred ------------eEEeecchhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 393 ------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 393 ------------fi~is~se~~~~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
++.+++.. ..+...++.+.+.+. .....||||||+|.|.. ...
T Consensus 78 sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a~ 136 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EAF 136 (624)
T ss_pred HHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------HHH
Confidence 22332211 112234455443332 23456999999999852 235
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
+.|+..|+.. ...+++|++|+.+..+.+.+++ |+. ++.|+.++.++..++|+..+.+.++.+.++ .++.|++.+
T Consensus 137 naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA~~s 210 (624)
T PRK14959 137 NALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIARRA 210 (624)
T ss_pred HHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7888888753 3457777788888888888887 653 789999999999999999888777777665 488888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.| +.+++.+++..++ + .+...|+.+++.+++
T Consensus 211 ~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 211 AG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred CC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 76 7777777777653 2 244467877765443
No 93
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.4e-15 Score=158.29 Aligned_cols=211 Identities=19% Similarity=0.261 Sum_probs=146.8
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh---
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF--- 401 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~--- 401 (597)
...+.+|+|++|++++++.|...+.. ...|+++|||||||+|||++|+++|+.+..+.....+.++
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 34578899999999999888887752 2456789999999999999999999987542211110000
Q ss_pred ---HHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 402 ---VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 402 ---~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
.+.....+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ....++
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~~~ 141 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHAIF 141 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCceEE
Confidence 000011223567777776643 2356999999997742 2356777777653 233455
Q ss_pred EeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 475 IaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
|.+|+.+..+.+++.+ |+. .+.+++|+.++...++...+.+.++.++++ .++.|+..+.| +.+.+.+.++.....
T Consensus 142 Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~~y 216 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVVTF 216 (367)
T ss_pred EEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 5566677888888887 543 789999999999999999888888877765 48888888865 777777777766654
Q ss_pred HHhcCCccccHHHHHHHH
Q 007591 555 AGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al 572 (597)
+. .. ||.+++...+
T Consensus 217 ~~---~~-it~~~v~~~~ 230 (367)
T PRK14970 217 CG---KN-ITRQAVTENL 230 (367)
T ss_pred cC---CC-CCHHHHHHHh
Confidence 42 22 7777766554
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.65 E-value=7.9e-15 Score=153.34 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=133.4
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+...+.+|+|++|++++++.|...+.. ...|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 344568899999999999998888752 234566777999999999999999999999999998876 11
Q ss_pred HhhccchHHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 404 LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
.......+........ ...++||+|||+|.+... +.. +.|...|+... .++.+|++||.++
T Consensus 81 --~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~---~~L~~~le~~~--~~~~~Ilt~n~~~ 142 (316)
T PHA02544 81 --IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQ---RHLRSFMEAYS--KNCSFIITANNKN 142 (316)
T ss_pred --HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHH---HHHHHHHHhcC--CCceEEEEcCChh
Confidence 1111111222111111 135789999999987321 112 23333454433 3457777889999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~-------~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.+++++++ |+. .+.++.|+.+++.++++.++. ..+.++.++. +..++....| |++.+++.....+
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~a-l~~l~~~~~~----d~r~~l~~l~~~~ 214 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKV-LAALVKKNFP----DFRRTINELQRYA 214 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCC----CHHHHHHHHHHHH
Confidence 99999998 775 789999999999877665432 3455655443 5777776654 4555554443333
Q ss_pred HhcCCccccHHHHH
Q 007591 556 GRLNKVVVEKIDFI 569 (597)
Q Consensus 556 ~r~~~~~It~~d~~ 569 (597)
. ...++..++.
T Consensus 215 ~---~~~i~~~~l~ 225 (316)
T PHA02544 215 S---TGKIDAGILS 225 (316)
T ss_pred c---cCCCCHHHHH
Confidence 2 1345554443
No 95
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.4e-15 Score=173.09 Aligned_cols=208 Identities=22% Similarity=0.194 Sum_probs=145.6
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------eEEe-
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC- 396 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------fi~i- 396 (597)
...+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++. +-.|
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 34567899999999999999988763 2455678999999999999999999988642 1111
Q ss_pred ecch----------hHHHh--hccchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHH
Q 007591 397 SASE----------FVELY--VGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 397 s~se----------~~~~~--vG~~~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL 460 (597)
+|-. +.... ...+...+|++.+.+. .....|+||||+|.|.. ...|.||
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLL 141 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALL 141 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHH
Confidence 1111 10000 0012345566554433 24456999999999863 3458899
Q ss_pred HhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007591 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 461 ~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (597)
+.|+... ..+++|++|+.++.|.+.|++ |. .++.|..++.++..++|+..+++.++.+.++ .+..|++.+.| +
T Consensus 142 K~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~e-al~lLa~~sgG-d 214 (824)
T PRK07764 142 KIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPG-VLPLVIRAGGG-S 214 (824)
T ss_pred HHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 9888544 456666677888888888888 53 3889999999999999999998877776554 37778888876 7
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHH
Q 007591 541 GADLANLVNEAALLAGRLNKVVVEKIDF 568 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (597)
.+++.++++..+..+ +...||.+++
T Consensus 215 lR~Al~eLEKLia~~---~~~~IT~e~V 239 (824)
T PRK07764 215 VRDSLSVLDQLLAGA---GPEGVTYERA 239 (824)
T ss_pred HHHHHHHHHHHHhhc---CCCCCCHHHH
Confidence 888888888755332 2334655543
No 96
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6e-15 Score=166.31 Aligned_cols=211 Identities=21% Similarity=0.212 Sum_probs=149.3
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------eEEe-
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC- 396 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------fi~i- 396 (597)
...+-+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++. +-.|
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 34567899999999999999988762 3456678999999999999999999987642 1111
Q ss_pred ecch----------hHHHh--hccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHH
Q 007591 397 SASE----------FVELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 397 s~se----------~~~~~--vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL 460 (597)
+|-. +++.- ...+...++++.+.+.. ....|++|||+|.|.. ...|.||
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALL 139 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALL 139 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHH
Confidence 0111 10000 01134556666655532 2345999999999853 3458889
Q ss_pred HhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007591 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 461 ~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (597)
..|+.. ...+++|.+|+.++.|.+.+++ | ..++.|..++.++..+.++.++.+.++.+.++ .+..+++...| +
T Consensus 140 K~LEEp--p~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~G-d 212 (584)
T PRK14952 140 KIVEEP--PEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGGG-S 212 (584)
T ss_pred HHHhcC--CCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 998853 3467777777888899999988 5 34899999999999999999998877777655 47778887765 8
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.+++.++++.++..+ +...|+.+++...
T Consensus 213 lR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 213 PRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 889888888765432 2345666555443
No 97
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.64 E-value=8.9e-15 Score=166.90 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=154.5
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEeecch
Q 007591 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASE 400 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is~se 400 (597)
-+.|+|.++..++|..++...-. +..+...++|+|+||||||++++.+.+++ .+.+++++|..
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 35678888888887777764211 12233345699999999999999998765 25678999954
Q ss_pred hHHHh----------h------c-cchHHHHHHHHHHH--hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHH
Q 007591 401 FVELY----------V------G-MGASRVRDLFARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 401 ~~~~~----------v------G-~~~~~vr~lF~~A~--~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~ 461 (597)
+...+ . | .....+..+|.... ....+||+|||||.|.... +.+|..|+.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR 894 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFD 894 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHH
Confidence 33221 0 1 11234455665542 2335699999999997432 244555555
Q ss_pred hhcCCCCCCcEEEEeecCC---CCCCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 462 EMDGFDSNSAVIVLGATNR---SDVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 462 emd~~~~~~~VIVIaaTNr---pd~Ld~aLlRpgRFd~-~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
... .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+.++......+.+++ ++.+|+...
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA-IELIArkVA 969 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA-IQLCARKVA 969 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHhhh
Confidence 433 23457899999986 4677888877 5542 4788999999999999999875322344443 677777443
Q ss_pred CC--CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhccCCCHHHHhHh
Q 007591 538 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAVV 594 (597)
Q Consensus 538 G~--SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~-~k~~~~ls~~ek~iv 594 (597)
.. ..|...++|..|+.. ++...|+.+|+.+|++++.... ...-..|+..+|.++
T Consensus 970 q~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVL 1026 (1164)
T PTZ00112 970 NVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFL 1026 (1164)
T ss_pred hcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHH
Confidence 22 445566777777765 2445899999999998765443 222345666666553
No 98
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=7.2e-15 Score=161.75 Aligned_cols=222 Identities=13% Similarity=0.197 Sum_probs=147.7
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecchhH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV 402 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se~~ 402 (597)
..+|++.+--+.....+..+......|. ...++++|||++|+|||+|++++++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4788886643433333333322223321 223569999999999999999999854 5788899999988
Q ss_pred HHhhccchH---HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 403 ELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 403 ~~~vG~~~~---~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
..+...... .+..+.+.. ..+.+|+|||++.+..+. .....+-.++..+ ....+.+|+++..
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~----------~~~e~lf~l~N~~---~~~~k~iIltsd~ 248 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKE----------KTNEIFFTIFNNF---IENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCCH----------HHHHHHHHHHHHH---HHcCCcEEEECCC
Confidence 776543221 222222222 245699999999875321 1122223333332 2233345554444
Q ss_pred CCC---CCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCC--CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 007591 480 RSD---VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (597)
Q Consensus 480 rpd---~Ld~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~l--~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 552 (597)
.|. .+++.|.+ || ..++.+.+|+.++|.+|++.+++..++ .+.+++ ++.|+..+.| +++.|.++++.+.
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~ev-l~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEA-INFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHccCC-CHHHHHHHHHHHH
Confidence 453 45788888 77 478889999999999999999987664 455554 7889999987 8999999999988
Q ss_pred HHHHhcC-CccccHHHHHHHHHHH
Q 007591 553 LLAGRLN-KVVVEKIDFIHAVERS 575 (597)
Q Consensus 553 l~A~r~~-~~~It~~d~~~Al~rv 575 (597)
..+.... ...|+.+.+.+++...
T Consensus 325 ~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 325 FWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHhcccCCCCCCHHHHHHHHhhc
Confidence 6666553 3679999999988765
No 99
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.64 E-value=5.2e-15 Score=154.33 Aligned_cols=211 Identities=29% Similarity=0.394 Sum_probs=144.9
Q ss_pred cCCCCcCcccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC---eEEee
Q 007591 324 EQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCS 397 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~---L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p---fi~is 397 (597)
+...+-+++|.+|+++...+ |+.+++.-+ . ..++|+||||||||+||+.|+.....+ |+.++
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq~~-----------i-pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNR-----------I-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHcCC-----------C-CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 44456789999999887654 444444322 2 259999999999999999999988666 78777
Q ss_pred cchhHHHhhccchHHHHHHHHHHHh-----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcE
Q 007591 398 ASEFVELYVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (597)
Q Consensus 398 ~se~~~~~vG~~~~~vr~lF~~A~~-----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~V 472 (597)
+.. .....+|++|++++. ....|||||||+.+.+..++ .||-.++ +..|
T Consensus 198 At~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD---------------~fLP~VE----~G~I 251 (554)
T KOG2028|consen 198 ATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD---------------TFLPHVE----NGDI 251 (554)
T ss_pred ccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh---------------cccceec----cCce
Confidence 643 345778999999975 34679999999999876653 2333332 5678
Q ss_pred EEEeec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh---c--C-CCCCCC------CCCHHHHHHhCCC
Q 007591 473 IVLGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS---K--K-ELPLAK------DIDLGDIASMTTG 538 (597)
Q Consensus 473 IVIaaT--Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~---~--~-~l~l~~------dvdl~~LA~~t~G 538 (597)
++|+|| |..-.|+.+|+++|| ++.+.....++...||..... + + .-++.. +--++.|+..+.|
T Consensus 252 ~lIGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 252 TLIGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred EEEecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 888777 555789999999666 788899999999999987544 1 1 112221 1226778888887
Q ss_pred CCHHHHHHHHHHHHHHH-Hhc---CCccccHHHHHHHHHHHh
Q 007591 539 FTGADLANLVNEAALLA-GRL---NKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~A-~r~---~~~~It~~d~~~Al~rvi 576 (597)
=.-+ ..|.+..++..+ .+. .+..++.+|+.+++.+.-
T Consensus 329 DaR~-aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 329 DARA-ALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred hHHH-HHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 3333 333334332222 222 456889999999987653
No 100
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=9.3e-15 Score=166.94 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=152.7
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEE---eecch
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS---CSASE 400 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~---is~se 400 (597)
....+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|..+.++-.. -.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 344678899999999999999988863 2456679999999999999999999987653110 01111
Q ss_pred hHH-------Hhh-----ccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhc
Q 007591 401 FVE-------LYV-----GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 401 ~~~-------~~v-----G~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd 464 (597)
... .+. ..+...+|++.+.+.. ....|++|||+|.|.. ...+.||..|+
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLE 143 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLE 143 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhh
Confidence 100 000 1234557888877764 3456999999998853 34688999888
Q ss_pred CCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 007591 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (597)
Q Consensus 465 ~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL 544 (597)
.. ...+++|.+|+.++.|.+.+++ |+. .+.|.+++.++..++++..+.+.++.+.++ .+..+|..+.| +.+++
T Consensus 144 EP--P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~A 216 (725)
T PRK07133 144 EP--PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRDA 216 (725)
T ss_pred cC--CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 53 3466777788888999999988 654 899999999999999999888777766554 37788888876 78888
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 545 ANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 545 ~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.++++.++... ...|+.+++.++
T Consensus 217 lslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 217 LSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHH
Confidence 88888765442 233777766654
No 101
>PRK08727 hypothetical protein; Validated
Probab=99.64 E-value=8.7e-15 Score=147.75 Aligned_cols=209 Identities=19% Similarity=0.215 Sum_probs=138.2
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~ 403 (597)
+..+|++.++..+. .+..+..... ......++|+||+|||||+|+.+++.++ +...++++..++..
T Consensus 14 ~~~~f~~f~~~~~n--~~~~~~~~~~---------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 14 SDQRFDSYIAAPDG--LLAQLQALAA---------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred CcCChhhccCCcHH--HHHHHHHHHh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 45789887765542 2222211111 1123459999999999999999997764 66777777665433
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
. +.+.++... ...+|+|||+|.+.... +.+..+-.++..+. .+..-+|+++...|..
T Consensus 83 ~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~----------~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 83 R--------LRDALEALE--GRSLVALDGLESIAGQR----------EDEVALFDFHNRAR---AAGITLLYTARQMPDG 139 (233)
T ss_pred h--------HHHHHHHHh--cCCEEEEeCcccccCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCChhh
Confidence 2 233444333 34599999999875322 11233334444432 1222344445455654
Q ss_pred C---ChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 484 L---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 484 L---d~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
+ +++|.+ || ...+.+++|+.+++.+|++.++...++.+++++ ++.|++.+.| +.+.+.++++.....+...
T Consensus 140 l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~-~~~La~~~~r-d~r~~l~~L~~l~~~~~~~ 215 (233)
T PRK08727 140 LALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAA-IDWLLTHGER-ELAGLVALLDRLDRESLAA 215 (233)
T ss_pred hhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 4 789988 76 568899999999999999998887788887775 8899999875 7777777788765545544
Q ss_pred CCccccHHHHHHHHHH
Q 007591 559 NKVVVEKIDFIHAVER 574 (597)
Q Consensus 559 ~~~~It~~d~~~Al~r 574 (597)
+ ..||...+.+.+..
T Consensus 216 ~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 K-RRVTVPFLRRVLEE 230 (233)
T ss_pred C-CCCCHHHHHHHHhh
Confidence 4 46899888887753
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6.1e-15 Score=166.85 Aligned_cols=203 Identities=18% Similarity=0.237 Sum_probs=151.2
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------- 392 (597)
..+-+|+||+|++++++.|...+.. .+.++.+||+||+|+|||++|+++|+.++++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 4567899999999999999988753 2456778999999999999999999987542
Q ss_pred -----------eEEeecchhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
++.+++.. ..+...++++.+.+... ...|++|||+|.|.. ...|
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~n 137 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFN 137 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHH
Confidence 22222211 12345677777766532 235999999998863 3458
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+.. ...+++|.+|+.++.|.+.+++ |.. .+.|..++.++....+...+++.++.+.++ .+..|++.+.
T Consensus 138 aLLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~-al~~la~~a~ 211 (576)
T PRK14965 138 ALLKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDA-ALALVARKGD 211 (576)
T ss_pred HHHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcC
Confidence 899988853 3466777788888999999987 543 788999999999999999998888877666 4888999998
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
| +.+++.+++..+..... ..|+.+|+...
T Consensus 212 G-~lr~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 212 G-SMRDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred C-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 7 77888888877655432 24777766544
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.64 E-value=3.2e-15 Score=175.54 Aligned_cols=203 Identities=23% Similarity=0.333 Sum_probs=151.1
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEee
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is 397 (597)
.-.++.++|.++..+.+.+++. .+.+++++|+||||||||++|+++|.++ +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3467889999998777776653 2355689999999999999999999975 47899999
Q ss_pred cchhH--HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEE
Q 007591 398 ASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (597)
Q Consensus 398 ~se~~--~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVI 475 (597)
+..++ ..|.|+.+.+++.+|+.+....++||||||||.|.+..+.. +.. ..-+-|...+. +..+.+|
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~----~~a~lLkp~l~----rg~l~~I 311 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAI----DAANILKPALA----RGELQCI 311 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Ccc----cHHHHhHHHHh----CCCcEEE
Confidence 88876 46788889999999999988889999999999998654321 111 11222333332 5678999
Q ss_pred eecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCCC-----H
Q 007591 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----G 541 (597)
Q Consensus 476 aaTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~----~~l~l~~dvdl~~LA~~t~G~S-----g 541 (597)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... .++.+.++. +..++..+.+|. |
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~dea-l~~i~~ls~~yi~~r~lP 387 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKA-LEAAAKLSDQYIADRFLP 387 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCccccCc
Confidence 9998764 47999999 997 6899999999999998865432 234444443 666777666653 5
Q ss_pred HHHHHHHHHHHHHHHh
Q 007591 542 ADLANLVNEAALLAGR 557 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r 557 (597)
.....++++|+.....
T Consensus 388 dkaidlld~a~a~~~~ 403 (821)
T CHL00095 388 DKAIDLLDEAGSRVRL 403 (821)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 6677888988776543
No 104
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.4e-14 Score=160.80 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=148.6
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-------CeEEe-
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC- 396 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------pfi~i- 396 (597)
...+.+|+|++|++.+.+.|+..+.. .+.++.+|||||+|+|||++|+.+|..+++ |+-.+
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 34567899999999999999888753 234566899999999999999999998753 22111
Q ss_pred ecchhHH-----Hh-----hccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh
Q 007591 397 SASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 397 s~se~~~-----~~-----vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e 462 (597)
+|..+.. .+ ...+...++.+.+.+.. ..+.|++|||+|.+.. ...+.|+..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~ 142 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKT 142 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHH
Confidence 1111100 00 01233446666665543 3456999999998752 234778888
Q ss_pred hcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007591 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 md~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+..+ ..+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...+++.+++..++.+.++ .+..|+..+.| +.+
T Consensus 143 LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~-al~~La~~s~G-~lr 215 (486)
T PRK14953 143 LEEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK-ALDLLAQASEG-GMR 215 (486)
T ss_pred HhcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 87533 345555566777888888887 554 789999999999999999998888777655 47888888876 788
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
++.++++.++..+ ...||.+++.+++
T Consensus 216 ~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 216 DAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 8888888876442 3457777777644
No 105
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.63 E-value=6.3e-15 Score=173.40 Aligned_cols=201 Identities=24% Similarity=0.367 Sum_probs=141.1
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEe
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~i 396 (597)
.+-++++++|.++. ++.+++-|.. +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~e---i~~~i~iL~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEE---IRRTIQVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHH---HHHHHHHHhc---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 34578899999985 4444443322 234579999999999999999999987 7889998
Q ss_pred ecchhH--HHhhccchHHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE
Q 007591 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI 473 (597)
+...++ ..|.|+.+.+++.+|+.+.. ..++||||||+|.|.+.+... ++.+. -+.|...+ .++.+.
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~----~~~lkp~l----~~g~l~ 309 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDA----GNMLKPAL----ARGELH 309 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhH----HHHhcchh----hcCCCe
Confidence 888776 45888999999999998654 568999999999998654321 12221 12232222 367899
Q ss_pred EEeecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----CCCCCCCCHHHHHHhCCCC-----
Q 007591 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIASMTTGF----- 539 (597)
Q Consensus 474 VIaaTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~----l~l~~dvdl~~LA~~t~G~----- 539 (597)
+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+..+.. +.+.++ .+...+..+.+|
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~-a~~~a~~ls~ry~~~~~ 385 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDP-AIVAAATLSHRYIADRQ 385 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHH-HHHHHHHHhhccccCCC
Confidence 999999876 48999999 998 688999999999999988765532 222222 233333444333
Q ss_pred CHHHHHHHHHHHHHH
Q 007591 540 TGADLANLVNEAALL 554 (597)
Q Consensus 540 SgaDL~~Lv~eAal~ 554 (597)
-+.....+++.|+..
T Consensus 386 ~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 386 LPDKAIDLIDEAASS 400 (857)
T ss_pred CChHHHHHHHHHhcc
Confidence 344555566665443
No 106
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.5e-15 Score=167.05 Aligned_cols=165 Identities=25% Similarity=0.383 Sum_probs=132.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH--------
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-------- 403 (597)
+|-.|++++|+.+.|++.--+- .|....+-++|+||||+|||+++|+||+.+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 4789999999999997764211 12345677899999999999999999999999999998654432
Q ss_pred -HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-------------CCC
Q 007591 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-------------DSN 469 (597)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-------------~~~ 469 (597)
.|+|....++-+.++.+....| +++|||||.+++.-++. . -..||..||-- -.-
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGD------P-----asALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGD------P-----ASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCC------h-----HHHHHHhcChhhccchhhhccccccch
Confidence 4899999999999999999999 99999999999533321 0 13444444421 123
Q ss_pred CcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 007591 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (597)
Q Consensus 470 ~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~ 517 (597)
+.|++|||+|..+.|+++|+. |+. +|.++-+..+|..+|.+.|+-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 579999999999999999998 886 899999999999999998874
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.7e-15 Score=160.21 Aligned_cols=216 Identities=15% Similarity=0.194 Sum_probs=149.9
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCe-E--------
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-I-------- 394 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf-i-------- 394 (597)
+...+.+|++|+|++.+++.|+..++. .+.|..+||+||||+|||++|+++|+++.+.- .
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 344678899999999999999887762 35567799999999999999999999886521 0
Q ss_pred -Eeecc------hhHH-------Hhhc---cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHH
Q 007591 395 -SCSAS------EFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (597)
Q Consensus 395 -~is~s------e~~~-------~~vG---~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e 453 (597)
.-.|. .+.. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 00010 0000 0111 123566666665532 2235999999998853
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 007591 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (597)
Q Consensus 454 ~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA 533 (597)
...+.|+..++... ...++|.+|+.+..+.+.+.+ |.. .+++.+++.++..+.++..+...++.+.++ .++.|+
T Consensus 142 ~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l~ 215 (397)
T PRK14955 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLIG 215 (397)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 23467778777433 344555566667788888877 554 789999999999999999888777777666 388888
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHh-cCCccccHHHHHHHH
Q 007591 534 SMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (597)
Q Consensus 534 ~~t~G~SgaDL~~Lv~eAal~A~r-~~~~~It~~d~~~Al 572 (597)
..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 88876 788888888877766532 234578888776654
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.63 E-value=6.6e-15 Score=147.42 Aligned_cols=203 Identities=21% Similarity=0.328 Sum_probs=128.0
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecchh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se~ 401 (597)
|+.||++.+--+.-+..+..+.....++. ..-..++||||+|+|||+|.+|+++++ +..++++++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 57899998633333333333222222221 123358999999999999999999874 678999999999
Q ss_pred HHHhhccchH-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 402 VELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~~~-~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
...+...... .+.+ |..... ...+|+||++|.+..+. ..+..+-.++.. +....+.+|+++...
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~~----------~~q~~lf~l~n~---~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 76 IREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGKQ----------RTQEELFHLFNR---LIESGKQLILTSDRP 140 (219)
T ss_dssp HHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTHH----------HHHHHHHHHHHH---HHHTTSEEEEEESS-
T ss_pred HHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCch----------HHHHHHHHHHHH---HHhhCCeEEEEeCCC
Confidence 8776443222 2223 322222 34599999999986432 112233333333 323455677777666
Q ss_pred CCC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 481 SDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 481 pd~---Ld~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
|.. +++.|.+ || ...+.+.+|+.++|.+|++..+..+++.+.+++ .+.|+....+ +.++|..+++.-...+
T Consensus 141 P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 141 PSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred CccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 654 4677877 77 468999999999999999999999999988886 8889998875 8999999998866554
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.9e-14 Score=160.38 Aligned_cols=204 Identities=21% Similarity=0.260 Sum_probs=149.4
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------- 391 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~------------- 391 (597)
...+.+|+||+|++.+++.|+..+.. .+.++.+|||||+|+|||++|+++|+.+.+
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34568899999999999999988753 245667899999999999999999998632
Q ss_pred -----------CeEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 392 -----------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 392 -----------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
.++.+++.+ ..+...++++.+.+.. ....|++|||+|.|.. ...
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~ 134 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAF 134 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHH
Confidence 122222211 0123567777765432 1235999999998853 345
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
|.||..|+..+ ..+.+|.+|+.+..|.+++++ |. ..++|.+++.++....++..+.+.++.+.++ .+..|++.+
T Consensus 135 NALLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~s 208 (535)
T PRK08451 135 NALLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARSG 208 (535)
T ss_pred HHHHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 78899988653 345555566778899999988 63 4899999999999999999998888877665 488899988
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.| +.+++.+++..|+..+ ...||.+++.+.
T Consensus 209 ~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 209 NG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred CC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 76 8899999998877654 234666655433
No 110
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=7.7e-15 Score=164.73 Aligned_cols=203 Identities=17% Similarity=0.242 Sum_probs=148.6
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------- 391 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~------------- 391 (597)
...+.+|+|++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34567899999999999988887642 345678999999999999999999998743
Q ss_pred -----------CeEEeecchhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 392 -----------PFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 392 -----------pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
.++.+++.. ..+...++.+.+.+... ...|++|||+|.|.. ...
T Consensus 78 sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~ 136 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAW 136 (605)
T ss_pred HHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHH
Confidence 122222211 12344577777666542 235999999998852 234
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
+.|+..|+.. ...+++|++|+.+..|.+.+++ |.. .+.+.+|+.++....++..+.+.++.+.++. +..++..+
T Consensus 137 NaLLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~ea-l~~La~lS 210 (605)
T PRK05896 137 NALLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNA-IDKIADLA 210 (605)
T ss_pred HHHHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHc
Confidence 7788888743 3456777777888999999988 654 7899999999999999999888777776653 78888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (597)
.| +.+++.++++.++..+ +. .|+.+++.+
T Consensus 211 ~G-dlR~AlnlLekL~~y~---~~-~It~e~V~e 239 (605)
T PRK05896 211 DG-SLRDGLSILDQLSTFK---NS-EIDIEDINK 239 (605)
T ss_pred CC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHH
Confidence 76 7888888888755443 22 277766665
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=99.62 E-value=2.5e-14 Score=144.60 Aligned_cols=180 Identities=16% Similarity=0.218 Sum_probs=128.9
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcC
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~ 441 (597)
...++|+||+|+|||+|++++++++ +..+++++..++.... ..+.+..... .+|+|||++.+....
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh-
Confidence 4679999999999999999998754 6788888888876531 2233333322 489999999875322
Q ss_pred CccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC---CCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHH
Q 007591 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHV 516 (597)
Q Consensus 442 ~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd---~Ld~aLlRpgRF--d~~I~v~~Pd~~eR~~ILk~~l 516 (597)
..+. .|+..++.+..+...+|++++..|. .+.+.|.+ || ...+.+..|+.+++.++++..+
T Consensus 114 ---------~~~~---~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 114 ---------DWEE---ALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ---------HHHH---HHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 1122 2333333333445667777776663 34688888 77 4688899999999999999777
Q ss_pred hcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 517 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 517 ~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
...++.+++++ ++.|+++..+ +.+.+.++++.-...+.. .+..||..-+.+++
T Consensus 180 ~~~~~~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDEV-GHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 77778887775 8889999986 899999999987654443 44568988777766
No 112
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.8e-14 Score=162.20 Aligned_cols=209 Identities=18% Similarity=0.196 Sum_probs=150.0
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------eEEe-e
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-S 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------fi~i-s 397 (597)
..+.+|+||+|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.++++ +-.| +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 4567899999999999999888752 2456679999999999999999999987642 2111 1
Q ss_pred cchhHHH-------hhc---cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhh
Q 007591 398 ASEFVEL-------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~se~~~~-------~vG---~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~em 463 (597)
|..+... +.| .+...++++.+.+.. ....|++|||+|.|.. ...|.|+..|
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~L 143 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKTI 143 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHhh
Confidence 1110000 011 123456666654432 3456999999998852 3457888888
Q ss_pred cCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007591 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 d~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+. +...+++|.+|+.+..|.+++++ |+. .+.+.+++.++..++++..+...++.+.++ .+..|++.+.| +.++
T Consensus 144 Ee--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dlR~ 216 (563)
T PRK06647 144 EE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SVRD 216 (563)
T ss_pred cc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 84 34566777777778889999988 654 789999999999999999998888777665 48888988876 8888
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 544 LANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
+.++++.++..+ ...|+.+++.++
T Consensus 217 alslLdklis~~----~~~It~e~V~~l 240 (563)
T PRK06647 217 AYTLFDQVVSFS----DSDITLEQIRSK 240 (563)
T ss_pred HHHHHHHHHhhc----CCCCCHHHHHHH
Confidence 888888766443 234777666554
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.62 E-value=1.3e-14 Score=171.10 Aligned_cols=203 Identities=22% Similarity=0.345 Sum_probs=146.5
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEe
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~i 396 (597)
.+-.++.++|.++....+.+++. . +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34578889999986444444432 2 334578999999999999999999975 6788888
Q ss_pred ecchhH--HHhhccchHHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE
Q 007591 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI 473 (597)
+...++ ..|.|+.+.+++.+|+.+.. ..|+||||||||.|.+..... +.. ...+.|...+ .+..+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~----d~~~~Lk~~l----~~g~i~ 304 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAM----DAGNMLKPAL----ARGELH 304 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chh----HHHHHhchhh----hcCceE
Confidence 887775 46888889999999999865 458999999999997543211 111 1223333222 356799
Q ss_pred EEeecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----CCCCCCCCHHHHHHhCCCC-----
Q 007591 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIASMTTGF----- 539 (597)
Q Consensus 474 VIaaTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~----l~l~~dvdl~~LA~~t~G~----- 539 (597)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+..+.. +.+.++ .+..++..+.+|
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~-~i~~~~~ls~~yi~~r~ 380 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDP-AIVAAATLSHRYITDRF 380 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHH-HHHHHHHhccccccccC
Confidence 999998773 57999999 997 689999999999999998766532 222222 355566666554
Q ss_pred CHHHHHHHHHHHHHHHH
Q 007591 540 TGADLANLVNEAALLAG 556 (597)
Q Consensus 540 SgaDL~~Lv~eAal~A~ 556 (597)
-|.....|+++|+..+.
T Consensus 381 lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 381 LPDKAIDLIDEAAARIR 397 (852)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 35677888998886654
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.5e-14 Score=161.96 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=153.9
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe-------
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC------- 396 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i------- 396 (597)
....+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.....
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 344567999999999999999987753 35677899999999999999999999886532111
Q ss_pred ------ecc--------hhHHHh--hccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 397 ------SAS--------EFVELY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 397 ------s~s--------e~~~~~--vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
+|. ++.... ...+...+|++++.+... ...|++|||+|.|.. ...
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~ 149 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAF 149 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHH
Confidence 111 111100 012345678888777532 356999999998852 345
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
|.|+..|+.... .+++|.+|+.++.+.+.+++ |. ..+.|..|+.++...+++..+++.++.+.++ .++.|++.+
T Consensus 150 naLLKtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~a 223 (598)
T PRK09111 150 NALLKTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARAA 223 (598)
T ss_pred HHHHHHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 888888885443 45565566777778888887 54 4799999999999999999998888777665 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.| +.+++.++++.++... ...|+.+++.+.+
T Consensus 224 ~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ll 254 (598)
T PRK09111 224 EG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDML 254 (598)
T ss_pred CC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHh
Confidence 76 8889988888765442 3458888777655
No 115
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.61 E-value=4e-14 Score=147.36 Aligned_cols=203 Identities=23% Similarity=0.251 Sum_probs=139.2
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC-----CCeEEeecch
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg-----~pfi~is~se 400 (597)
..+.+|+|++|++++++.|...+..- . ..++||+||||||||++|+++++++. .+++.+++++
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~-----------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEK-----------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCC-----------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 34578999999999999888876421 1 22589999999999999999999862 3455555443
Q ss_pred hHHHhhccchHHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 401 FVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~------~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
-. +...+++.+..... ..+.+|+|||+|.+... ..+.|+..++....+ ..+
T Consensus 79 ~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~~~--~~l 135 (319)
T PRK00440 79 ER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYSQN--TRF 135 (319)
T ss_pred cc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCCCC--CeE
Confidence 21 11122222222211 23569999999988522 124556666654443 344
Q ss_pred EeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 475 IaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
|.++|.+..+.+++.+ |+. .+.+++++.++...+++.++.+.++.+.++ .++.++..+.| +.+.+.+.++.++..
T Consensus 136 Il~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~~~~ 210 (319)
T PRK00440 136 ILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAAAAT 210 (319)
T ss_pred EEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 4566777777777877 655 689999999999999999998888877766 48889988865 666666666655442
Q ss_pred HHhcCCccccHHHHHHHHH
Q 007591 555 AGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~ 573 (597)
...||.+++..++.
T Consensus 211 -----~~~it~~~v~~~~~ 224 (319)
T PRK00440 211 -----GKEVTEEAVYKITG 224 (319)
T ss_pred -----CCCCCHHHHHHHhC
Confidence 35688888776653
No 116
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.7e-14 Score=157.21 Aligned_cols=205 Identities=20% Similarity=0.254 Sum_probs=145.1
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------ 392 (597)
...+.+|+||+|++++++.|...+.. .+.++.+|||||||+|||++|+++|+.+.++
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 34568899999999999988888753 2456779999999999999999999987432
Q ss_pred -------------eEEeecchhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccchHHHHH
Q 007591 393 -------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 393 -------------fi~is~se~~~~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~ 455 (597)
++.+++.. ..+-..++++.+... .....||+|||+|.+.. ..
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~ 137 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EA 137 (451)
T ss_pred HHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HH
Confidence 22222211 012234554443332 24467999999998852 23
Q ss_pred HHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 007591 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (597)
Q Consensus 456 Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 535 (597)
.+.|+..|+... ..+++|++|+.+..|.+.+++ |.. .+++..++.++....++..+++.++.+.++ .++.|+..
T Consensus 138 ~n~LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~~ 211 (451)
T PRK06305 138 FNSLLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIARA 211 (451)
T ss_pred HHHHHHHhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 478888888633 456666677888889999988 554 789999999999999999888777777655 47888988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
+.| +.+++.++++...... + ..|+.+++.+++
T Consensus 212 s~g-dlr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 212 AQG-SLRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred cCC-CHHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 866 6777777776654331 2 337776665443
No 117
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.61 E-value=1.8e-14 Score=150.26 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=85.3
Q ss_pred EEEEeecCC------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 007591 472 VIVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (597)
Q Consensus 472 VIVIaaTNr------------pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 539 (597)
-+||.|||+ |.-++..|+. |+- .|...+++.++.++|++..+...++.++++ .++.|+.....-
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~-Ale~L~~ig~et 396 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDD-ALEYLTDIGEET 396 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHH-HHHHHHhhchhh
Confidence 377778887 5667777776 652 677888999999999999999988888877 489999888877
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 007591 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (597)
|-+...+|+.-|...|.+++...|..+|+++|.+-..
T Consensus 397 SLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 397 SLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFL 433 (450)
T ss_pred hHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHh
Confidence 8899999999999999999999999999999976443
No 118
>PRK06620 hypothetical protein; Validated
Probab=99.60 E-value=1.9e-14 Score=143.72 Aligned_cols=199 Identities=14% Similarity=0.208 Sum_probs=132.5
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCC-CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~-p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
.++.+|++++--+.-...+..+..+...+ +..+ .+.++||||||||||+|++++++..+..++. .....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-- 79 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-- 79 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc--
Confidence 35678988765553333333333322111 1222 2579999999999999999999988764432 11110
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC-
Q 007591 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV- 483 (597)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~- 483 (597)
.+.+ . ...+|+|||||.+- +..+-.+++.+. .....+||+++..|..
T Consensus 80 ---------~~~~----~-~~d~lliDdi~~~~---------------~~~lf~l~N~~~---e~g~~ilits~~~p~~l 127 (214)
T PRK06620 80 ---------EEIL----E-KYNAFIIEDIENWQ---------------EPALLHIFNIIN---EKQKYLLLTSSDKSRNF 127 (214)
T ss_pred ---------hhHH----h-cCCEEEEeccccch---------------HHHHHHHHHHHH---hcCCEEEEEcCCCcccc
Confidence 1111 1 23589999999541 112233333332 2445778877766643
Q ss_pred -CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007591 484 -LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 484 -Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
+ ++|++ |+. .++.+.+||.+++..+++.++...++.+++++ ++.|+.+..+ +.+.+.++++.....+...+
T Consensus 128 ~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~- 201 (214)
T PRK06620 128 TL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALISK- 201 (214)
T ss_pred ch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-
Confidence 5 78887 774 57999999999999999999987788888876 8999999976 89999999998654444433
Q ss_pred ccccHHHHHHHH
Q 007591 561 VVVEKIDFIHAV 572 (597)
Q Consensus 561 ~~It~~d~~~Al 572 (597)
..||...+.+++
T Consensus 202 ~~it~~~~~~~l 213 (214)
T PRK06620 202 RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHh
Confidence 568988887765
No 119
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.60 E-value=1.9e-14 Score=156.56 Aligned_cols=224 Identities=28% Similarity=0.332 Sum_probs=140.7
Q ss_pred Cccc-ccCChHHHHHHHHHHHH----hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-
Q 007591 330 TFAD-VAGVDEAKEELEEIVEF----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE- 403 (597)
Q Consensus 330 tf~d-V~G~de~k~~L~eiv~~----l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~- 403 (597)
.+++ |+|++++|+.|...+.. +........-...+..++||+||||||||++|+++|..++.||+.++++.+.+
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3443 89999999999877632 11110000001124568999999999999999999999999999999988754
Q ss_pred HhhccchHH-HHHHHHHH----HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----------
Q 007591 404 LYVGMGASR-VRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------- 467 (597)
Q Consensus 404 ~~vG~~~~~-vr~lF~~A----~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~----------- 467 (597)
.|+|..... +..++..+ ....++||||||||.+...++.. +...+-..+.+.+.||..|++-.
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~-~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENP-SITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCC-CcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 466764433 34444332 23467899999999998764321 00111111346677888887531
Q ss_pred CCCcEEEEeecCCCC----------------------------------------------------CCChhhhCCCCcc
Q 007591 468 SNSAVIVLGATNRSD----------------------------------------------------VLDPALRRPGRFD 495 (597)
Q Consensus 468 ~~~~VIVIaaTNrpd----------------------------------------------------~Ld~aLlRpgRFd 495 (597)
+....++|.|+|... -+.|+++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 122456666666510 0234443 4999
Q ss_pred eEEEecCCCHHHHHHHHHH----HH-------hcCCCC--CCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHh
Q 007591 496 RVVMVETPDKIGREAILKV----HV-------SKKELP--LAKDIDLGDIASM--TTGFTGADLANLVNEAALLAGR 557 (597)
Q Consensus 496 ~~I~v~~Pd~~eR~~ILk~----~l-------~~~~l~--l~~dvdl~~LA~~--t~G~SgaDL~~Lv~eAal~A~r 557 (597)
.++.|.+.+.++..+|+.. .+ ..+++. +.++ .++.|++. ..++-.|.|+.+++....-...
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~-al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDE-ALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHH-HHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 9999999999999999972 22 223333 3333 26677775 3344457787777776555443
No 120
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5e-15 Score=165.49 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=155.9
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH--------
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-------- 403 (597)
.|-.|++++|+.+-|.+.-.+... .....-++|+||||+|||+|++.||+.+|.+|+.++...+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 478999999999998776532211 122346889999999999999999999999999998764433
Q ss_pred -HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC-----C--------CCC
Q 007591 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----F--------DSN 469 (597)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~-----~--------~~~ 469 (597)
.|+|....++-+-+.+|....| +++|||||.++.+-.+. --..||.-+|- | -.-
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD-----------PaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD-----------PASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC-----------hHHHHHhhcCHhhcCchhhccccCccch
Confidence 4889999999999999999999 99999999998654321 01344444441 1 113
Q ss_pred CcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCC-----CCCCCCCHHHHH-HhCCC
Q 007591 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIA-SMTTG 538 (597)
Q Consensus 470 ~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~-----~~l-----~l~~dvdl~~LA-~~t~G 538 (597)
+.|++|||+|..+.++.+|+. |+. +|.+.-++.+|..+|.+.|+=. .++ .+.++. +..|. .+|..
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~a-i~~iI~~YTRE 540 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEA-IKDIIRYYTRE 540 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHH-HHHHHHHHhHh
Confidence 579999999999999999998 986 8999999999999999988632 222 222222 33333 23321
Q ss_pred CCH-----HHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHH
Q 007591 539 FTG-----ADLANLVNEAALLAGRLNKV---VVEKIDFIHAVER 574 (597)
Q Consensus 539 ~Sg-----aDL~~Lv~eAal~A~r~~~~---~It~~d~~~Al~r 574 (597)
+| ++|..+|+.++..-...... .|+..++.+-+-.
T Consensus 541 -AGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 541 -AGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 22 55667777766554443322 4666666665543
No 121
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.60 E-value=1.3e-14 Score=168.94 Aligned_cols=219 Identities=19% Similarity=0.267 Sum_probs=148.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH--------
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-------- 403 (597)
.|+.|++++|+.+.+.+...... +......++|+||||+|||++++++|+.++.+|+.++.....+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 35999999999998877653221 1123446999999999999999999999999999887664322
Q ss_pred -HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC-----CC--------CC
Q 007591 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (597)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~-----~~--------~~ 469 (597)
.|.|.....+.+.+..+....| ||+|||||.+....++ .....|+..||. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-----------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-----------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-----------CHHHHHHHHhccccEEEEecccccccccC
Confidence 3566666667777776665556 8999999999764321 123456665552 11 13
Q ss_pred CcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-----C-----CCCCCCCCHHHHHHh-CCC
Q 007591 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-----E-----LPLAKDIDLGDIASM-TTG 538 (597)
Q Consensus 470 ~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~-----~-----l~l~~dvdl~~LA~~-t~G 538 (597)
+++++|||+|.. .|+++|++ ||. .|.+..++.++..+|++.++..+ + +.+.+++ ++.|++. +..
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~a-i~~ii~~yt~e 538 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSA-IIGIIRYYTRE 538 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHH-HHHHHHhCCcc
Confidence 679999999887 59999998 996 89999999999999999888421 1 1222222 4555543 233
Q ss_pred CCHHHHHHHHHHHHHHHH----hcC---CccccHHHHHHHHH
Q 007591 539 FTGADLANLVNEAALLAG----RLN---KVVVEKIDFIHAVE 573 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~A~----r~~---~~~It~~d~~~Al~ 573 (597)
+-.|.|+.++...+..+. ..+ ...|+.+++.+.+-
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 333566655555433322 222 24678887776664
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.7e-14 Score=160.13 Aligned_cols=214 Identities=16% Similarity=0.243 Sum_probs=149.0
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeE-----------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI----------- 394 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi----------- 394 (597)
..+.+|+||+|++.+++.|+..+.. .+.+.++||+||+|||||++|+++|+.+.+.--
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 4567899999999999999887652 355677999999999999999999998866210
Q ss_pred ----Ee-ecchhHH-------Hhhc---cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHH
Q 007591 395 ----SC-SASEFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 395 ----~i-s~se~~~-------~~vG---~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~ 455 (597)
.| +|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+.. ..
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~a 143 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------AA 143 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------HH
Confidence 00 0111100 0111 123567776666532 3345999999998852 23
Q ss_pred HHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 007591 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (597)
Q Consensus 456 Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~ 535 (597)
.|.|+..|+..+. .+++|.+|+.+..|.+.+.+ |. ..+.|..++.++....+...+...++.+.++ .++.|+..
T Consensus 144 ~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La~~ 217 (620)
T PRK14954 144 FNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIARK 217 (620)
T ss_pred HHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 5788888885443 34555556667888888887 43 3899999999999999998888777777665 48888988
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-hcCCccccHHHHHHHH
Q 007591 536 TTGFTGADLANLVNEAALLAG-RLNKVVVEKIDFIHAV 572 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eAal~A~-r~~~~~It~~d~~~Al 572 (597)
+.| +.+++.+.++.....+. ......|+.+++.+.+
T Consensus 218 s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 218 AQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred hCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 876 77778777777665542 1234567877776654
No 123
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=2.3e-14 Score=155.14 Aligned_cols=182 Identities=21% Similarity=0.320 Sum_probs=126.8
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCe----------------
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------------- 393 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf---------------- 393 (597)
.|++|+|++.+++.|++++..-+.. +...+.+.++++||+||||+|||++|+++|..+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 5899999999999999999864321 2234555788999999999999999999999764431
Q ss_pred -------EEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh
Q 007591 394 -------ISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 394 -------i~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e 462 (597)
+.+.... ...+...+|++++.+.. ....|+||||+|.+... ..|.||+.
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~ 140 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKA 140 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHH
Confidence 1111110 11234568888887764 23469999999998632 33788888
Q ss_pred hcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 007591 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (597)
Q Consensus 463 md~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sga 542 (597)
|+..+. ..++|+ +|+.++.|.|.+++ |. ..+.|++|+.++..+++.... + +.++ ....++..+.|..+.
T Consensus 141 LEep~~-~~~fIL-~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~~-~a~~la~~s~G~~~~ 209 (394)
T PRK07940 141 VEEPPP-RTVWLL-CAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDPE-TARRAARASQGHIGR 209 (394)
T ss_pred hhcCCC-CCeEEE-EECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCHH-HHHHHHHHcCCCHHH
Confidence 875432 334444 45558999999998 54 489999999999887776322 2 2222 366788888886654
Q ss_pred HH
Q 007591 543 DL 544 (597)
Q Consensus 543 DL 544 (597)
.+
T Consensus 210 A~ 211 (394)
T PRK07940 210 AR 211 (394)
T ss_pred HH
Confidence 43
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=5.7e-14 Score=159.84 Aligned_cols=196 Identities=19% Similarity=0.255 Sum_probs=141.7
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEE------e-e
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS------C-S 397 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~------i-s 397 (597)
...+.+|++++|++++++.|..++..- +.+.++||+||+|+|||++|+++|+.+++.... + .
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 345688999999999999999888642 345579999999999999999999988652100 0 0
Q ss_pred cc-----------hhH--HHhhccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHH
Q 007591 398 AS-----------EFV--ELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 398 ~s-----------e~~--~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL 460 (597)
|. ++. +.....+...+|++++.+... ...|++|||+|.|.. ...+.||
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naLL 142 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNALL 142 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHHH
Confidence 10 110 011123456788888877532 346999999998852 3458889
Q ss_pred HhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007591 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 461 ~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (597)
..|+. +...+++|++|+.++.+.+.|++ |. ..+.|..++.++....+...+.+.++.+.++. +..|+..+.| +
T Consensus 143 K~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a-l~~La~~s~G-~ 215 (620)
T PRK14948 143 KTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA-LTLVAQRSQG-G 215 (620)
T ss_pred HHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-C
Confidence 98884 33456777777778888889887 54 37889999999988888888877777766553 7888888876 6
Q ss_pred HHHHHHHHHHHHH
Q 007591 541 GADLANLVNEAAL 553 (597)
Q Consensus 541 gaDL~~Lv~eAal 553 (597)
.+++.++++...+
T Consensus 216 lr~A~~lLeklsL 228 (620)
T PRK14948 216 LRDAESLLDQLSL 228 (620)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777776443
No 125
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.59 E-value=1.2e-14 Score=149.23 Aligned_cols=194 Identities=23% Similarity=0.243 Sum_probs=140.1
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------eEEe
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FISC 396 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------fi~i 396 (597)
.+...+-+|+|++|++.+.+.|...+.. + .-.++|||||||||||+.|+++|+++..| +...
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 4556788999999999999999988764 2 22369999999999999999999998652 2333
Q ss_pred ecchhHHHhhccchHHHHHHHHHHHh------cCC----eEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC
Q 007591 397 SASEFVELYVGMGASRVRDLFARAKK------EAP----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~A~~------~~P----~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~ 466 (597)
+.++.....+. ..++. -|.+... ..| .|++|||.|.|....+ +.|..-|+.+
T Consensus 95 naSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq---------------~aLrr~mE~~ 156 (346)
T KOG0989|consen 95 NASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ---------------AALRRTMEDF 156 (346)
T ss_pred cccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHHHH---------------HHHHHHHhcc
Confidence 44444332211 11111 1222221 122 4999999999985543 6788888875
Q ss_pred CCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHH
Q 007591 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (597)
Q Consensus 467 ~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~ 546 (597)
.. .+.+|..||..+.|.+.+.+ |.. .+.|+....+.....|+.++.+.+++++++. ++.|+..+.| +-++...
T Consensus 157 s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a-l~~I~~~S~G-dLR~Ait 229 (346)
T KOG0989|consen 157 SR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDA-LKLIAKISDG-DLRRAIT 229 (346)
T ss_pred cc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-cHHHHHH
Confidence 54 45666788999999888887 544 6788888888889999999999999998875 8899998877 6666666
Q ss_pred HHHHHHH
Q 007591 547 LVNEAAL 553 (597)
Q Consensus 547 Lv~eAal 553 (597)
.++.++.
T Consensus 230 ~Lqsls~ 236 (346)
T KOG0989|consen 230 TLQSLSL 236 (346)
T ss_pred HHHHhhc
Confidence 6666554
No 126
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.59 E-value=6.1e-14 Score=151.10 Aligned_cols=229 Identities=20% Similarity=0.247 Sum_probs=167.9
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecc
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~s 399 (597)
-.++.+|++++.-+.-.....-.......|. ..-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4578899998776665554444444444332 234569999999999999999999876 3468899999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
+|...++......-.+-|+.-. .-.+++||+|+.+.++.. ..++.-.++|.+ ....+-+|+++..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l-------~~~~kqIvltsdr 217 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNAL-------LENGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHH-------HhcCCEEEEEcCC
Confidence 9888776654444445566555 345999999999875431 122333333333 3345567777766
Q ss_pred CCCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 480 RSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 480 rpd~---Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
.|.. +.+.|.+ ||. ..+.+.+||.+.|.+||+..+...++.+.+++ +..+|..... +.++|..+++.....
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 6754 4588888 874 67889999999999999999999999988886 8888888865 899999999998888
Q ss_pred HHhcCCccccHHHHHHHHHHHhcchh
Q 007591 555 AGRLNKVVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi~g~~ 580 (597)
|...++ .||.+.+.+++.......+
T Consensus 294 a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 294 ALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 776665 7899999999888776544
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=8.5e-14 Score=158.02 Aligned_cols=211 Identities=19% Similarity=0.248 Sum_probs=146.2
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeE-----Eee-
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCS- 397 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi-----~is- 397 (597)
+...+.+|+||+|++++++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++..- .|.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 344678899999999999999887753 234566899999999999999999998754211 000
Q ss_pred cc-----------hhHHHh--hccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHH
Q 007591 398 AS-----------EFVELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 398 ~s-----------e~~~~~--vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL 460 (597)
|. ++.+.. ...+...++++.+.+.. ....||+|||+|.|.. ..++.|+
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLL 141 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALL 141 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHH
Confidence 10 000000 01223445666555442 2345999999998752 3457788
Q ss_pred HhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007591 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 461 ~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (597)
..|+... ..+++|.+++..+.+.+.+++ |.. .+.|..++..+...+++..+.+.++.+.++ .+..|+..+.| +
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G-d 214 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG-S 214 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 8887544 345666666667778888877 543 788999999999999999988877777665 37888888876 8
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
.+++.+.++..+.. ....|+.+++.+.
T Consensus 215 lr~al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 215 MRDAENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 88888888875442 2345888776554
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.55 E-value=1.5e-13 Score=138.68 Aligned_cols=195 Identities=23% Similarity=0.360 Sum_probs=140.4
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
....+.+++++|.+++|+.|.+-...+.. ..+..++||+|++|||||+++|++..+. |+.++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34578999999999999999887765322 4578899999999999999999999865 788888887766
Q ss_pred HHHhhccchHHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC--CCCCcEEEEeec
Q 007591 402 VELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 478 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~--~~~~~VIVIaaT 478 (597)
.. +..+++..+ ...+-|||+|++- + . .. +.....|...|||- ..+.+|+|.||+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F-e---------~~---d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F-E---------EG---DTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C-C---------CC---cHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 33 345555554 3345699999863 1 1 11 23335666667764 335789999999
Q ss_pred CCCCCCChhh---------------------hCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHH--HHH
Q 007591 479 NRSDVLDPAL---------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGD--IAS 534 (597)
Q Consensus 479 Nrpd~Ld~aL---------------------lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl~~--LA~ 534 (597)
|+-..+.+.+ --..||...+.|.+|+.++-.+|++.++.+.+++++++ ..-+. .|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9864443221 11249999999999999999999999999888877642 11112 244
Q ss_pred hCCCCCHHHHHHHHHH
Q 007591 535 MTTGFTGADLANLVNE 550 (597)
Q Consensus 535 ~t~G~SgaDL~~Lv~e 550 (597)
...|.||+-..+.++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5567788887777664
No 129
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.8e-13 Score=144.41 Aligned_cols=239 Identities=21% Similarity=0.277 Sum_probs=164.2
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-----eEEeecchhHH
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISCSASEFVE 403 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-----fi~is~se~~~ 403 (597)
..-+.+.+.++..++|..++... +....|.++++|||||||||.+++.+++++.-+ +++++|..+.+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t 85 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT 85 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC
Confidence 33445899999888888876542 223456679999999999999999999987433 89999976644
Q ss_pred Hh---------------hccchHHH-HHHHHHHH-hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC
Q 007591 404 LY---------------VGMGASRV-RDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 404 ~~---------------vG~~~~~v-r~lF~~A~-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~ 466 (597)
.+ .|.....+ ..+++... ....-||++||+|.|....+ .++..|+...+..
T Consensus 86 ~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~ 153 (366)
T COG1474 86 PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN 153 (366)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc
Confidence 32 11111222 22222222 23456999999999985432 5667777766544
Q ss_pred CCCCcEEEEeecCCC---CCCChhhhCCCCc-ceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHH---hCC
Q 007591 467 DSNSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIAS---MTT 537 (597)
Q Consensus 467 ~~~~~VIVIaaTNrp---d~Ld~aLlRpgRF-d~~I~v~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA~---~t~ 537 (597)
..+|.+|+.+|.. +.+|+.+.+ +| ...|.|++++.+|..+|++..++.. .-.+++++ ++.+|. ...
T Consensus 154 --~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~ 228 (366)
T COG1474 154 --KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAES 228 (366)
T ss_pred --ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcC
Confidence 5678999999886 578888877 55 3458999999999999999998742 12233332 444443 333
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhccCCCHHHHhH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAV 593 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~-~k~~~~ls~~ek~i 593 (597)
| ..+-...+|+.|+..|.+++...++.+++..|.+..-... ++....|+..+|.+
T Consensus 229 G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~ 284 (366)
T COG1474 229 G-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIV 284 (366)
T ss_pred c-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHH
Confidence 3 5677789999999999999999999999999955443322 22234566666543
No 130
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.54 E-value=2.5e-13 Score=154.77 Aligned_cols=217 Identities=25% Similarity=0.329 Sum_probs=140.7
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEE
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~ 395 (597)
..+.+|++++|++.+.+.+...+. . ..+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999998887654432 1 234579999999999999999998754 468999
Q ss_pred eecchhH-------HHhhccchHH----HHHHHHH----------HHhcCCeEEEEcCcchhhhhcCCccccccchHHHH
Q 007591 396 CSASEFV-------ELYVGMGASR----VRDLFAR----------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (597)
Q Consensus 396 is~se~~-------~~~vG~~~~~----vr~lF~~----------A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~ 454 (597)
++|..+. ....+..... .+..+.. .......+|||||++.|....+
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q------------- 282 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ------------- 282 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-------------
Confidence 9987641 1111211100 0111110 0011245999999998864332
Q ss_pred HHHHHHHhhcC--------------------------CCCCCcEEEEeec-CCCCCCChhhhCCCCcceEEEecCCCHHH
Q 007591 455 TLNQLLTEMDG--------------------------FDSNSAVIVLGAT-NRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (597)
Q Consensus 455 ~Ln~LL~emd~--------------------------~~~~~~VIVIaaT-Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~e 507 (597)
..|+..|+. -.....+++|++| +.++.++++|++ ||. .+.+++++.++
T Consensus 283 --~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ed 357 (615)
T TIGR02903 283 --NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPED 357 (615)
T ss_pred --HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHH
Confidence 223333321 0112346666554 667889999987 886 67899999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh--------cCCccccHHHHHHHHHHH
Q 007591 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR--------LNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 508 R~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r--------~~~~~It~~d~~~Al~rv 575 (597)
..+|++..+.+.++.+.++ .++.|++.+. .++...+++..+...+.. .....|+.+|+.+++...
T Consensus 358 i~~Il~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 358 IALIVLNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999999998766666555 3677777764 566666766666444321 123479999999998654
No 131
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.54 E-value=1e-13 Score=153.20 Aligned_cols=197 Identities=22% Similarity=0.308 Sum_probs=154.7
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------eEEee-
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS- 397 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------fi~is- 397 (597)
..+-+|+|++|++.+...|..++..-+. ..+.||.||.|||||++||.+|+.+++. +-.|.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~ri-----------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGRI-----------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCcc-----------hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 3567899999999999999999886443 4468999999999999999999987643 22221
Q ss_pred c--------chhHHH--hhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhh
Q 007591 398 A--------SEFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 398 ~--------se~~~~--~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~em 463 (597)
| .++++. -...+-..+|++.+.+.. ..+.|.+|||+|.|. .+..|.||..+
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKTL 143 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKTL 143 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhccc
Confidence 1 122211 112355678888887753 345699999999886 35669999998
Q ss_pred cCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 007591 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (597)
Q Consensus 464 d~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaD 543 (597)
+ ++...|++|.||..+..+++.+++ |.. ++.|...+.++....|...+.++++...++. +..+|+...| +.+|
T Consensus 144 E--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a-L~~ia~~a~G-s~RD 216 (515)
T COG2812 144 E--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDA-LSLIARAAEG-SLRD 216 (515)
T ss_pred c--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHcCC-Chhh
Confidence 8 556689999999999999999998 432 6789999999999999999999988887764 8899999988 8999
Q ss_pred HHHHHHHHHHHH
Q 007591 544 LANLVNEAALLA 555 (597)
Q Consensus 544 L~~Lv~eAal~A 555 (597)
...+++.|....
T Consensus 217 alslLDq~i~~~ 228 (515)
T COG2812 217 ALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHcc
Confidence 999999887664
No 132
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.53 E-value=8.5e-14 Score=147.58 Aligned_cols=219 Identities=22% Similarity=0.311 Sum_probs=136.4
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-------CCCeEEe--e
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC--S 397 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~i--s 397 (597)
....|++|+|++++++.|.-.+-. ....++||+||||||||++|+++++-+ +.|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 357799999999999887753210 112479999999999999999999987 3322111 1
Q ss_pred c-chh---------------HHHhhccchHHHHH--HHHHH-------------HhcCCeEEEEcCcchhhhhcCCcccc
Q 007591 398 A-SEF---------------VELYVGMGASRVRD--LFARA-------------KKEAPSIIFIDEIDAVAKSRDGRFRI 446 (597)
Q Consensus 398 ~-se~---------------~~~~vG~~~~~vr~--lF~~A-------------~~~~P~ILfIDEIDaL~~~r~~~~~~ 446 (597)
+ .+. +....+.++..+-. .++.+ ......+||||||+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 0 000 00111111111100 01111 001124999999998753
Q ss_pred ccchHHHHHHHHHHHhhcCCC-----------CCCcEEEEeecCCCC-CCChhhhCCCCcceEEEecCCCH-HHHHHHHH
Q 007591 447 VSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGREAILK 513 (597)
Q Consensus 447 ~~~~e~e~~Ln~LL~emd~~~-----------~~~~VIVIaaTNrpd-~Ld~aLlRpgRFd~~I~v~~Pd~-~eR~~ILk 513 (597)
.+...|+..|+.-. ....+++|+++|..+ .+.++++. ||...+.++.|.. ++|.+|++
T Consensus 143 -------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 143 -------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred -------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 34455666664321 245789999998754 68999998 9999999998866 89999998
Q ss_pred HHHhcCC-----------------------------CCCCCCCCHH---HHHHhCC-CCCHHHHHHHHHHHHHHHHhcCC
Q 007591 514 VHVSKKE-----------------------------LPLAKDIDLG---DIASMTT-GFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 514 ~~l~~~~-----------------------------l~l~~dvdl~---~LA~~t~-G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
....... +.+++++ ++ .++..+. .-.-+++. +++.|...|..+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~-~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr 291 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTV-LHDCAALCIALGSDGLRGELT-LLRAARALAAFEGA 291 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHH-HHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCC
Confidence 7543210 1111110 12 2223332 11335555 99999999999999
Q ss_pred ccccHHHHHHHHHHHh
Q 007591 561 VVVEKIDFIHAVERSI 576 (597)
Q Consensus 561 ~~It~~d~~~Al~rvi 576 (597)
..|+.+|+..+..-++
T Consensus 292 ~~V~~~Di~~~~~~vl 307 (334)
T PRK13407 292 EAVGRSHLRSVATMAL 307 (334)
T ss_pred CeeCHHHHHHHHHHhh
Confidence 9999999998876655
No 133
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=1.7e-13 Score=148.76 Aligned_cols=220 Identities=28% Similarity=0.352 Sum_probs=138.9
Q ss_pred ccCChHHHHHHHHHHHH----hcCh-hHHhhhCC-CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-Hhh
Q 007591 334 VAGVDEAKEELEEIVEF----LRSP-DKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYV 406 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~----l~~p-~~~~~lg~-~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-~~v 406 (597)
|+|++++++.|...+.. +... ..-...+. ....++||+||||||||++|+++|..+++||..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 79999999999887732 1110 00000001 12468999999999999999999999999999999887643 466
Q ss_pred ccc-hHHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----------CCC
Q 007591 407 GMG-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNS 470 (597)
Q Consensus 407 G~~-~~~vr~lF~~A----~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----------~~~ 470 (597)
|.. +..+..++..+ ....++||||||||.+.+++.... ...+-..+.+.+.||+.|++.. +..
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s-~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS-ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc-ccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 764 33344444322 234578999999999987543211 0111111345666777776532 123
Q ss_pred cEEEEeecCCC---------------------------C-----------------------CCChhhhCCCCcceEEEe
Q 007591 471 AVIVLGATNRS---------------------------D-----------------------VLDPALRRPGRFDRVVMV 500 (597)
Q Consensus 471 ~VIVIaaTNrp---------------------------d-----------------------~Ld~aLlRpgRFd~~I~v 500 (597)
+.++|.|+|-. + -+.|+|+ ||+|.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 56788887761 0 0224444 499999999
Q ss_pred cCCCHHHHHHHHHHH----Hhc-------CCCCC--CCCCCHHHHHHhC--CCCCHHHHHHHHHHHHHHHHh
Q 007591 501 ETPDKIGREAILKVH----VSK-------KELPL--AKDIDLGDIASMT--TGFTGADLANLVNEAALLAGR 557 (597)
Q Consensus 501 ~~Pd~~eR~~ILk~~----l~~-------~~l~l--~~dvdl~~LA~~t--~G~SgaDL~~Lv~eAal~A~r 557 (597)
.+.+.++..+|+... +++ .++.+ .++ .++.||+.. ..+-.|.|+.+++....-++-
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~-a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEE-ALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHH-HHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 999999999998763 221 12222 222 266777753 344457888888877666544
No 134
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=1.7e-13 Score=147.72 Aligned_cols=238 Identities=26% Similarity=0.357 Sum_probs=155.8
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhh-CCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-Hhhc-c
Q 007591 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~l-g~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-~~vG-~ 408 (597)
-|+|++++|+.+..++.. ++.......+ .-.+|+++||+||||||||++|+++|..++.||+.+++.++.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999999877753 1211110111 1235789999999999999999999999999999999988875 5666 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 007591 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (597)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (597)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566666666550
Q ss_pred ------------------------------------------------------------------------hcCCeEEE
Q 007591 422 ------------------------------------------------------------------------KEAPSIIF 429 (597)
Q Consensus 422 ------------------------------------------------------------------------~~~P~ILf 429 (597)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01234999
Q ss_pred EcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------CCCcEEEEeecC----CCCCCChhhhCCCCcceE
Q 007591 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRV 497 (597)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------~~~~VIVIaaTN----rpd~Ld~aLlRpgRFd~~ 497 (597)
|||||.++.+... .+.+-..+.+...||..|+|-. ...+|++||+.. .|+.|-|.|. |||...
T Consensus 253 iDEiDKIa~~~~~---~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGES---SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIR 327 (441)
T ss_pred EEchhhhcccCCC---CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 9999999976522 1222333557788898888732 235788888773 4566777775 599999
Q ss_pred EEecCCCHHHHHHHHH----HHHh-------cCCCC--CCCCCCHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHh
Q 007591 498 VMVETPDKIGREAILK----VHVS-------KKELP--LAKDIDLGDIASMT-------TGFTGADLANLVNEAALLAGR 557 (597)
Q Consensus 498 I~v~~Pd~~eR~~ILk----~~l~-------~~~l~--l~~dvdl~~LA~~t-------~G~SgaDL~~Lv~eAal~A~r 557 (597)
+.+..++.++...||. ..++ ..++. +.++ .+..||+.. .+.-.+-|..++......+.-
T Consensus 328 v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~-Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~f 406 (441)
T TIGR00390 328 VELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDE-AIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISF 406 (441)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHH-HHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHh
Confidence 9999999999998872 2222 22222 2222 356666543 232235566655555444433
Q ss_pred c------CCccccHHHHHHHHHHHh
Q 007591 558 L------NKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 558 ~------~~~~It~~d~~~Al~rvi 576 (597)
. ....|+.+.+...+...+
T Consensus 407 e~p~~~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 407 EAPDLSGQNITIDADYVSKKLGALV 431 (441)
T ss_pred cCCCCCCCEEEECHHHHHhHHHHHH
Confidence 2 234577777776666554
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=3.5e-13 Score=138.41 Aligned_cols=185 Identities=24% Similarity=0.252 Sum_probs=119.0
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch------hHHHhhccchHHHHH--------------------HHHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE------FVELYVGMGASRVRD--------------------LFAR 419 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se------~~~~~vG~~~~~vr~--------------------lF~~ 419 (597)
..+||+||||||||++|+++|..+|.||+.++|.. ++..+.+.....+.+ .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999987753 333332221111111 1112
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------------CCCcEEEEeecCCC----
Q 007591 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------------SNSAVIVLGATNRS---- 481 (597)
Q Consensus 420 A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------------~~~~VIVIaaTNrp---- 481 (597)
|.. .+.+|+|||||.+.+. +.+.|+..|+... .+.++.||+|+|..
T Consensus 102 A~~-~g~~lllDEi~r~~~~---------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSKPE---------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHH-cCCEEEEcchhhCCHH---------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 222 2359999999986532 3344444443211 22467899999976
Q ss_pred -CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH-----h-C---CCCCHHHHHHHHHHH
Q 007591 482 -DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS-----M-T---TGFTGADLANLVNEA 551 (597)
Q Consensus 482 -d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~-----~-t---~G~SgaDL~~Lv~eA 551 (597)
..++++|++ || ..+.++.|+.++-.+|++.++. +++. ..+.++. + . ...+ .+.++.-|
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-----~~~~-~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~ 233 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-----VAED-SAATIVRLVREFRASGDEITSG---LRASLMIA 233 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-----CCHH-HHHHHHHHHHHHHhhCCccCCc---HHHHHHHH
Confidence 367899998 88 4899999999999999998762 2222 1222221 1 1 1123 44445544
Q ss_pred HHHHHhcCCccccHHHHHHHHHHHhcc
Q 007591 552 ALLAGRLNKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 552 al~A~r~~~~~It~~d~~~Al~rvi~g 578 (597)
...+.......++.+||.+.+..++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 234 EVATQQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred HHHHHcCCCCCCCcHHHHHHHHHHhcc
Confidence 455555567889999999998887653
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=5.6e-13 Score=151.74 Aligned_cols=202 Identities=19% Similarity=0.254 Sum_probs=144.9
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC--------------
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------------- 392 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------------- 392 (597)
.+.+|+||+|++++++.|...+.. .+.++.+|||||+|+|||++|+++|..+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 467899999999999999888752 3456779999999999999999999987532
Q ss_pred -----------eEEeecchhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
++.+++.+ ..+...++++.+.+... ...|++|||+|.|.. ...+
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~n 139 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFN 139 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHH
Confidence 22222211 11235577777666432 235999999998852 3457
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.|+..|+..+ ...++|.+|+.+..|-+.|++ |.. .+.|.+++.++....++..+.+.++.+.++ .++.|+..+.
T Consensus 140 aLLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~ 213 (614)
T PRK14971 140 AFLKTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKAD 213 (614)
T ss_pred HHHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 8888888543 345566666667888889988 543 799999999999999999998888776655 4788898886
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
| +.+++.++++..+..+. .. |+.+++.+.
T Consensus 214 g-dlr~al~~Lekl~~y~~---~~-It~~~V~~~ 242 (614)
T PRK14971 214 G-GMRDALSIFDQVVSFTG---GN-ITYKSVIEN 242 (614)
T ss_pred C-CHHHHHHHHHHHHHhcc---CC-ccHHHHHHH
Confidence 5 77777777776554432 12 666555443
No 137
>PRK09087 hypothetical protein; Validated
Probab=99.51 E-value=1.6e-13 Score=138.24 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=134.1
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
.+..+|++.+.-+.-...+. ++... + ....+.++|+||+|+|||||+++++...++.++ +..++...+
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~-~l~~~--~-------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~~ 82 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVS-LVDHW--P-------NWPSPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSDA 82 (226)
T ss_pred CCCCChhceeecCchHHHHH-HHHhc--c-------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchHH
Confidence 35678999875332222222 22211 1 112334999999999999999999988766544 333332221
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC---
Q 007591 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--- 482 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd--- 482 (597)
+..... .+|+|||+|.+.. ..++ +-++++.+ ....+.+||+++..|.
T Consensus 83 -----------~~~~~~---~~l~iDDi~~~~~---------~~~~----lf~l~n~~---~~~g~~ilits~~~p~~~~ 132 (226)
T PRK09087 83 -----------ANAAAE---GPVLIEDIDAGGF---------DETG----LFHLINSV---RQAGTSLLMTSRLWPSSWN 132 (226)
T ss_pred -----------HHhhhc---CeEEEECCCCCCC---------CHHH----HHHHHHHH---HhCCCeEEEECCCChHHhc
Confidence 111111 3799999997631 1111 22233322 2234567777766553
Q ss_pred CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007591 483 VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 483 ~Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
...+.|++ ||. .++.+.+|+.++|.++++.+++..++.+++++ ++.|+++..+ +.+.+..+++.....+...+
T Consensus 133 ~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~- 207 (226)
T PRK09087 133 VKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALERK- 207 (226)
T ss_pred cccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-
Confidence 33677887 774 78999999999999999999998888888876 8999999985 77888888877666555544
Q ss_pred ccccHHHHHHHHHHH
Q 007591 561 VVVEKIDFIHAVERS 575 (597)
Q Consensus 561 ~~It~~d~~~Al~rv 575 (597)
..||...+.++++..
T Consensus 208 ~~it~~~~~~~l~~~ 222 (226)
T PRK09087 208 SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHHHHHHHHhh
Confidence 558999999988754
No 138
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.51 E-value=2.3e-13 Score=146.77 Aligned_cols=238 Identities=24% Similarity=0.330 Sum_probs=157.4
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-Hhhc-c
Q 007591 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~lg-~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-~~vG-~ 408 (597)
.|+|++++|+.+..++.. ++.......+. -..|.++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 399999999999887743 11110000011 113689999999999999999999999999999999998886 5777 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 007591 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (597)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (597)
.+..++++|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566777766661
Q ss_pred ---h--------------------------------------------------------------------cCCeEEEE
Q 007591 422 ---K--------------------------------------------------------------------EAPSIIFI 430 (597)
Q Consensus 422 ---~--------------------------------------------------------------------~~P~ILfI 430 (597)
. ..-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12349999
Q ss_pred cCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------CCCcEEEEeecC----CCCCCChhhhCCCCcceEE
Q 007591 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRVV 498 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------~~~~VIVIaaTN----rpd~Ld~aLlRpgRFd~~I 498 (597)
||||.++.+.+.. +.+-..+.+...||..|+|-. ...+|++||+.. .|+.|-|.|.- ||...+
T Consensus 256 DEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRV 330 (443)
T ss_pred EcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999765321 223334557788898888732 235788888763 45667788864 999999
Q ss_pred EecCCCHHHHHHHHHH----HHhc-------CCCC--CCCCCCHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHhc
Q 007591 499 MVETPDKIGREAILKV----HVSK-------KELP--LAKDIDLGDIASMTT-------GFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 499 ~v~~Pd~~eR~~ILk~----~l~~-------~~l~--l~~dvdl~~LA~~t~-------G~SgaDL~~Lv~eAal~A~r~ 558 (597)
.+..++.++...||.. .+++ .++. +.++ .++.||+... +.-.+-|..++......+.-.
T Consensus 331 ~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~-Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe 409 (443)
T PRK05201 331 ELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDD-AIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFE 409 (443)
T ss_pred ECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHH-HHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhcc
Confidence 9999999999988832 2222 2222 2222 3666665432 322355666666655544322
Q ss_pred ------CCccccHHHHHHHHHHHh
Q 007591 559 ------NKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 559 ------~~~~It~~d~~~Al~rvi 576 (597)
....|+.+.+...+..++
T Consensus 410 ~p~~~~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 410 APDMSGETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred CCCCCCCEEEECHHHHHHHHHHHH
Confidence 124577776666665554
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.50 E-value=4.3e-13 Score=155.52 Aligned_cols=199 Identities=20% Similarity=0.309 Sum_probs=132.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-----Hhhc
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----LYVG 407 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-----~~vG 407 (597)
.|+|++++++.|.+.+...+..-. ...+|...+||+||||||||.+|+++|..++.+|+.++++++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 389999999999998875322100 01123346999999999999999999999999999999998743 3333
Q ss_pred cchH-----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC--C-------CCCcEE
Q 007591 408 MGAS-----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--D-------SNSAVI 473 (597)
Q Consensus 408 ~~~~-----~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~--~-------~~~~VI 473 (597)
.... .-..+.+..+....|||||||||.+.+ .+.+.|++.||.- . .-.+++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 2111 111233334455568999999999853 2456677777632 1 124688
Q ss_pred EEeecCCC-------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-------CCC
Q 007591 474 VLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-------KEL 521 (597)
Q Consensus 474 VIaaTNrp-------------------------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~-------~~l 521 (597)
+|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+.+ +++
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i 678 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV 678 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999832 124577777 99999999999999999998877653 233
Q ss_pred CC--CCCCCHHHHHHhC--CCCCHHHHHHHHHHHH
Q 007591 522 PL--AKDIDLGDIASMT--TGFTGADLANLVNEAA 552 (597)
Q Consensus 522 ~l--~~dvdl~~LA~~t--~G~SgaDL~~Lv~eAa 552 (597)
.+ .+. .++.|+... ..+-.+.|+.+++.-.
T Consensus 679 ~l~~~~~-~~~~l~~~~~~~~~GAR~l~r~i~~~l 712 (758)
T PRK11034 679 SLEVSQE-ARDWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_pred CceECHH-HHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 32 222 255566543 2233466776666543
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.47 E-value=8.9e-13 Score=153.34 Aligned_cols=197 Identities=26% Similarity=0.354 Sum_probs=134.6
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCC---CCCC-eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH----
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL---- 404 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~---~~p~-gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~---- 404 (597)
.|+|++++++.+.+.+...+. |. ..|. .+||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~-------g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRA-------GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhc-------CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHH
Confidence 578999998888887764321 21 1243 58999999999999999999999999999999987552
Q ss_pred -hhccc-----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---------CC
Q 007591 405 -YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (597)
Q Consensus 405 -~vG~~-----~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------~~ 469 (597)
..|.. ......+.+..+....+||+|||||.+.+ .+.+.|++.||... .-
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCCcccCC
Confidence 22221 11223344555566678999999998753 34567777776421 12
Q ss_pred CcEEEEeecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc------
Q 007591 470 SAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 518 (597)
Q Consensus 470 ~~VIVIaaTNrpd-------------------------~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~------ 518 (597)
.++++|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.+
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~ 670 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLN 670 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678888987631 24566665 99999999999999999999988763
Q ss_pred -CC--CCCCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHH
Q 007591 519 -KE--LPLAKDIDLGDIASM--TTGFTGADLANLVNEAALL 554 (597)
Q Consensus 519 -~~--l~l~~dvdl~~LA~~--t~G~SgaDL~~Lv~eAal~ 554 (597)
.+ +.+.++ .++.|+.. ...+-.+.|+.+++.-...
T Consensus 671 ~~~~~l~i~~~-a~~~La~~~~~~~~GaR~l~r~i~~~~~~ 710 (731)
T TIGR02639 671 EKNIKLELTDD-AKKYLAEKGYDEEFGARPLARVIQEEIKK 710 (731)
T ss_pred hCCCeEEeCHH-HHHHHHHhCCCcccCchHHHHHHHHHhHH
Confidence 12 222222 25556654 3344557777777765443
No 141
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.46 E-value=9.9e-13 Score=140.03 Aligned_cols=221 Identities=22% Similarity=0.265 Sum_probs=142.8
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-------CCCeEEeec-
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSA- 398 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~is~- 398 (597)
+...|++|+|++++|..|...+. +| ...|+||.||+|||||++|++++..+ +.||. ...
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 45689999999999988876542 22 23589999999999999999997754 23443 111
Q ss_pred ------chhHH-------------------HhhccchHHH------HHHHHHHH---------hcCCeEEEEcCcchhhh
Q 007591 399 ------SEFVE-------------------LYVGMGASRV------RDLFARAK---------KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 399 ------se~~~-------------------~~vG~~~~~v------r~lF~~A~---------~~~P~ILfIDEIDaL~~ 438 (597)
++... ...|.++.++ ...|.... .....+||||||+.+..
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 00110 0112222221 11111111 11134999999999864
Q ss_pred hcCCccccccchHHHHHHHHHHHhhcC---------C--CCCCcEEEEeecCCCC-CCChhhhCCCCcceEEEecCCC-H
Q 007591 439 SRDGRFRIVSNDEREQTLNQLLTEMDG---------F--DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPD-K 505 (597)
Q Consensus 439 ~r~~~~~~~~~~e~e~~Ln~LL~emd~---------~--~~~~~VIVIaaTNrpd-~Ld~aLlRpgRFd~~I~v~~Pd-~ 505 (597)
.. ...|+..|+. . ....++++|++.|..+ .+.++++. ||...+.+..|+ .
T Consensus 159 ~~---------------Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 159 HL---------------VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred HH---------------HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 43 2445555532 1 1235788888888665 69999999 999999999997 5
Q ss_pred HHHHHHHHHHHhcC-----------------------------CCCCCCCCCHH---HHHHhCCCCCHHHHHHHHHHHHH
Q 007591 506 IGREAILKVHVSKK-----------------------------ELPLAKDIDLG---DIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 506 ~eR~~ILk~~l~~~-----------------------------~l~l~~dvdl~---~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
+++.+|++...... .+.+++.+ ++ .++..+.--+++--..+++.|..
T Consensus 222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~-~~yi~~l~~~~~~~s~Ra~i~l~raArA 300 (350)
T CHL00081 222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDL-RVKISQICSELDVDGLRGDIVTNRAAKA 300 (350)
T ss_pred HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHH-HHHHHHHHHHHCCCCChHHHHHHHHHHH
Confidence 89999998754211 01111111 22 23334433357777788888999
Q ss_pred HHHhcCCccccHHHHHHHHHHHhcc
Q 007591 554 LAGRLNKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~rvi~g 578 (597)
.|..+++..|+.+|+..+..-++.-
T Consensus 301 ~Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 301 LAAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887753
No 142
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.46 E-value=1.2e-12 Score=139.17 Aligned_cols=216 Identities=24% Similarity=0.287 Sum_probs=139.0
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-------CCCeE--------
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI-------- 394 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi-------- 394 (597)
-|..|+|++++|..|.-.+- +| ...++||.|+||+|||++++++++-+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 37889999999887754331 11 23479999999999999999999866 33332
Q ss_pred -Eeecch----------------hHHHhhccchHHHH------------------HHHHHHHhcCCeEEEEcCcchhhhh
Q 007591 395 -SCSASE----------------FVELYVGMGASRVR------------------DLFARAKKEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 395 -~is~se----------------~~~~~vG~~~~~vr------------------~lF~~A~~~~P~ILfIDEIDaL~~~ 439 (597)
..+|.. +.++..+..+..+- .++.+| ...+||||||+.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCHH
Confidence 011110 01111112222211 111222 2349999999988543
Q ss_pred cCCccccccchHHHHHHHHHHHhhcCC-----------CCCCcEEEEeecCCCC-CCChhhhCCCCcceEEEecCCCH-H
Q 007591 440 RDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-I 506 (597)
Q Consensus 440 r~~~~~~~~~~e~e~~Ln~LL~emd~~-----------~~~~~VIVIaaTNrpd-~Ld~aLlRpgRFd~~I~v~~Pd~-~ 506 (597)
+...|+..|+.- ....++++|++.|..+ .+.++++. ||...+.++.|+. +
T Consensus 147 ---------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 147 ---------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred ---------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 334555555421 1234688888888654 78999999 9999999999975 8
Q ss_pred HHHHHHHHHHhcC-----------------------------CCCCCCCC--CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 507 GREAILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 507 eR~~ILk~~l~~~-----------------------------~l~l~~dv--dl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
+|.+|++...... .+.+++.+ -+..++..+..-+.+....+++.|...|
T Consensus 210 er~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 210 LRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 8899998743210 01111111 0222334443335677888999999999
Q ss_pred HhcCCccccHHHHHHHHHHHhc
Q 007591 556 GRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi~ 577 (597)
..+++..|+.+|+..++.-++.
T Consensus 290 al~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887774
No 143
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.43 E-value=1.8e-12 Score=148.41 Aligned_cols=216 Identities=23% Similarity=0.284 Sum_probs=141.8
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc--------------------
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-------------------- 389 (597)
-|.+|+|+++++..|.-+.. +| ...+|||.||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 37899999999877754432 21 12469999999999999999999876
Q ss_pred ---------------CCCeEEeecchhHHHhhccc--hHHH--------HHHHHHHHhcCCeEEEEcCcchhhhhcCCcc
Q 007591 390 ---------------EVPFISCSASEFVELYVGMG--ASRV--------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (597)
Q Consensus 390 ---------------g~pfi~is~se~~~~~vG~~--~~~v--------r~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~ 444 (597)
..||+.+.+.......+|.- ...+ ..++..|. ..|||||||+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~---~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAH---RGILYIDEVNLLDD------ 140 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecC---CCeEEeChhhhCCH------
Confidence 35677665554333333321 0000 11122222 24999999999863
Q ss_pred ccccchHHHHHHHHHHHhhcCC-----------CCCCcEEEEeecCCC-CCCChhhhCCCCcceEEEecCCC-HHHHHHH
Q 007591 445 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPD-KIGREAI 511 (597)
Q Consensus 445 ~~~~~~e~e~~Ln~LL~emd~~-----------~~~~~VIVIaaTNrp-d~Ld~aLlRpgRFd~~I~v~~Pd-~~eR~~I 511 (597)
.+.+.|+..|+.- .....++||+++|.. ..|.++|+. ||+.+|.++.+. .+++.++
T Consensus 141 ---------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 141 ---------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ---------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 3446666666522 113468999999864 368899998 999999998774 5777777
Q ss_pred HHHHHhcC-----------------------------CCCCCCCCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHhcC
Q 007591 512 LKVHVSKK-----------------------------ELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 512 Lk~~l~~~-----------------------------~l~l~~dvdl~~LA~~t--~G~-SgaDL~~Lv~eAal~A~r~~ 559 (597)
++...... .+.+.++ .++.|+..+ .|. +.+....+++-|...|..++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g 288 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDG 288 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 76533210 1112211 133343332 234 35666778888889999999
Q ss_pred CccccHHHHHHHHHHHhcc
Q 007591 560 KVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 560 ~~~It~~d~~~Al~rvi~g 578 (597)
+..|+.+|+.+|+.-++..
T Consensus 289 r~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLPH 307 (633)
T ss_pred CCcCCHHHHHHHHHHHhhh
Confidence 9999999999999988843
No 144
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.42 E-value=3.7e-12 Score=114.50 Aligned_cols=121 Identities=42% Similarity=0.634 Sum_probs=82.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhccchHH---HHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~~~~~---vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
..++++++||||||||++++.+++.+ +.+++.+++.+............ ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 89999999887655433222111 1222334445668899999999873
Q ss_pred hhcCCccccccchHHHHHHHHHHHhhcCCC----CCCcEEEEeecCCCC--CCChhhhCCCCcceEEEec
Q 007591 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD----SNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 501 (597)
Q Consensus 438 ~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~----~~~~VIVIaaTNrpd--~Ld~aLlRpgRFd~~I~v~ 501 (597)
.. ....++..+.... ...++.+|+++|... .+++.+.. ||+..+.++
T Consensus 98 ~~---------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG---------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH---------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 21 1122333333222 235788888888776 67778877 888777665
No 145
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.3e-12 Score=139.76 Aligned_cols=155 Identities=24% Similarity=0.417 Sum_probs=112.6
Q ss_pred HHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe-ecchhHHHhhccchHHHHHHHHHHHhcCC
Q 007591 347 IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGASRVRDLFARAKKEAP 425 (597)
Q Consensus 347 iv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i-s~se~~~~~vG~~~~~vr~lF~~A~~~~P 425 (597)
++..++++++ .+-..+||+||||+|||.||..+|...+.||+.+ +..+++.+.....-..+...|+.|++..-
T Consensus 526 lv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 3444555543 3456799999999999999999999999999985 55555444433344568999999999988
Q ss_pred eEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCC-cEEEEeecCCCCCCCh-hhhCCCCcceEEEecCC
Q 007591 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLDP-ALRRPGRFDRVVMVETP 503 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~-~VIVIaaTNrpd~Ld~-aLlRpgRFd~~I~v~~P 503 (597)
+||++|+|+.|.. +...+....+.++..|+..+...++.. +.+|++||.+.+.|.. .++. .|+..+.||..
T Consensus 600 siivvDdiErLiD-----~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl 672 (744)
T KOG0741|consen 600 SIIVVDDIERLLD-----YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNL 672 (744)
T ss_pred eEEEEcchhhhhc-----ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCcc
Confidence 9999999999873 234555666788888888888777654 5777777776655432 2344 78888888876
Q ss_pred CH-HHHHHHHHH
Q 007591 504 DK-IGREAILKV 514 (597)
Q Consensus 504 d~-~eR~~ILk~ 514 (597)
+. ++..+++..
T Consensus 673 ~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 673 TTGEQLLEVLEE 684 (744)
T ss_pred CchHHHHHHHHH
Confidence 54 555555543
No 146
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.38 E-value=6.2e-12 Score=133.14 Aligned_cols=68 Identities=38% Similarity=0.561 Sum_probs=53.8
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecchhHH
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se~~~ 403 (597)
...+.++|+.+++++.--+++.++.- .-..+++||.||||||||.||-++|+++| +||..++++++.+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~-------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEG-------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred eccccccChHHHHHHHHHHHHHHhcc-------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 34568999999999999999887663 33568999999999999999999999996 9999999988754
No 147
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.38 E-value=1.5e-11 Score=127.65 Aligned_cols=219 Identities=19% Similarity=0.248 Sum_probs=144.9
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecchhH
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEFV 402 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se~~ 402 (597)
+.-+|...+++.|+.+.+.+..|.. ..+.++||+|++|.|||++++.++... .+|++.+.++.-.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 3468999999999999988888854 445579999999999999999998754 3688887654211
Q ss_pred H---Hh------hc-------cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC
Q 007591 403 E---LY------VG-------MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 403 ~---~~------vG-------~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~ 466 (597)
+ .| .| ...+.-..+....+...+.+|+|||++.+.. +.....+.++|.|-...+.+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGNEL 179 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhhcc
Confidence 1 11 01 1112223344555667778999999999863 33344566666655543322
Q ss_pred CCCCcEEEEeecCCCC--CCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhcCCCCCCCCCCH----HHHHHhCCCC
Q 007591 467 DSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDL----GDIASMTTGF 539 (597)
Q Consensus 467 ~~~~~VIVIaaTNrpd--~Ld~aLlRpgRFd~~I~v~~Pd-~~eR~~ILk~~l~~~~l~l~~dvdl----~~LA~~t~G~ 539 (597)
.-.++.+++..-.. .-|+.+.+ ||+ .+.++... .++...++..+-....+.-..+... ..|-..+.|
T Consensus 180 --~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G- 253 (302)
T PF05621_consen 180 --QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG- 253 (302)
T ss_pred --CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 23455555443223 33788887 997 56666543 3456667776665433332333333 344567777
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 007591 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (597)
+-+++.++++.|+..|.+.+.+.||.+.++.
T Consensus 254 ~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 254 LIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred chHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 4569999999999999999999999988775
No 148
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.35 E-value=1.7e-11 Score=144.34 Aligned_cols=195 Identities=27% Similarity=0.354 Sum_probs=130.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhC-CCCCCe-eEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH---
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG-ARPPRG-VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg-~~~p~g-VLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~--- 404 (597)
.|+|++++.+.+.+.+...+.- +. ...|.+ +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~g-----l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAG-----LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcC-----CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 5899999988888877543210 10 123554 7999999999999999999988 468899999888553
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------
Q 007591 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------- 467 (597)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-------- 467 (597)
|+|..+. ..+....++..++||+|||||.+.+ .+.+.|++.+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCCCcE
Confidence 3333221 1233445567779999999986542 34466666665321
Q ss_pred -CCCcEEEEeecCCCC-----------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 007591 468 -SNSAVIVLGATNRSD-----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (597)
Q Consensus 468 -~~~~VIVIaaTNrpd-----------------------------~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~ 517 (597)
.-.+.+||.|||... .+.|+++. |++ +|.|.+.+.++..+|+...+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 114678888988521 13466666 887 899999999999999988765
Q ss_pred cC--------CC--CCCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHH
Q 007591 518 KK--------EL--PLAKDIDLGDIASMTTG--FTGADLANLVNEAAL 553 (597)
Q Consensus 518 ~~--------~l--~l~~dvdl~~LA~~t~G--~SgaDL~~Lv~eAal 553 (597)
+. ++ .++++ ..+.|+..+.+ +-.+.|.++++.-..
T Consensus 782 ~l~~rl~~~~gi~l~i~d~-a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEA-LVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred HHHHHHHHhcCceEEECHH-HHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 41 32 22333 26667776643 446778777776443
No 149
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=2.4e-11 Score=129.99 Aligned_cols=189 Identities=16% Similarity=0.170 Sum_probs=126.8
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-------CeEEe---
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC--- 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------pfi~i--- 396 (597)
.+..+++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 467899999999999999988763 355677999999999999999999998744 21110
Q ss_pred -ecch-----------hHHH--h---------hccchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccc
Q 007591 397 -SASE-----------FVEL--Y---------VGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSN 449 (597)
Q Consensus 397 -s~se-----------~~~~--~---------vG~~~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~ 449 (597)
.|.. +... . ..-+...+|.+.+... .+...|++|||+|.|..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 1111 1000 0 0011234555444333 23456999999999863
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCH
Q 007591 450 DEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDL 529 (597)
Q Consensus 450 ~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl 529 (597)
...|.||..|+..+. +.++|..|+.++.+.+.+++ |. ..+.+++|+.++..++++...... .+.++ .+
T Consensus 156 ----~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~--~~~~~-~~ 223 (351)
T PRK09112 156 ----NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ--GSDGE-IT 223 (351)
T ss_pred ----HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--CCCHH-HH
Confidence 344789999986433 34555556778888899988 65 499999999999999998743221 12232 25
Q ss_pred HHHHHhCCCCCHHHHHHHHHH
Q 007591 530 GDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~e 550 (597)
..+++.+.| +++...++++.
T Consensus 224 ~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHHHcCC-CHHHHHHHHhc
Confidence 677777776 67666666644
No 150
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=1.3e-11 Score=129.93 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=98.7
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH--hhccchHH----------HHHHHHHHHhcCCeEEEEcC
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASR----------VRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~--~vG~~~~~----------vr~lF~~A~~~~P~ILfIDE 432 (597)
.++|||.||||||||++|+.+|.+++.|++.+++...... .+|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4579999999999999999999999999999988766554 34432110 1123344433 467999999
Q ss_pred cchhhhhcCCccccccchHHHHHHHHHHHh-----hc----CCCCCCcEEEEeecCCCC------------CCChhhhCC
Q 007591 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MD----GFDSNSAVIVLGATNRSD------------VLDPALRRP 491 (597)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e-----md----~~~~~~~VIVIaaTNrpd------------~Ld~aLlRp 491 (597)
||...+.. ...++.+|.. +. .+..+..+.||||.|..+ .|+++++.
T Consensus 143 in~a~p~~------------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAGRPDV------------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhccCHHH------------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99874332 2344555542 11 123456799999999854 56899998
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHH
Q 007591 492 GRFDRVVMVETPDKIGREAILKVHV 516 (597)
Q Consensus 492 gRFd~~I~v~~Pd~~eR~~ILk~~l 516 (597)
||-.++.++.|+.++-.+|+....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhc
Confidence 998888999999999999998765
No 151
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.35 E-value=2.8e-11 Score=123.77 Aligned_cols=130 Identities=22% Similarity=0.289 Sum_probs=95.4
Q ss_pred CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC-------------CCCCChhhhCC
Q 007591 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR-------------SDVLDPALRRP 491 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr-------------pd~Ld~aLlRp 491 (597)
|.||||||++.|.- ..+.-|-..++ ++-.-+||.|||+ |.-+++.|+.
T Consensus 297 PGVLFIDEVhMLDi---------------EcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI---------------ECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred CcceEeeehhhhhh---------------HHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 67888888877631 11122222232 2333477778876 4556677776
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 492 GRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 492 gRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
|+- .|..-+++.++.++|++.+.+..++.+.++ .+..++.....-|-+...+|+.-|.++|...++..|..+|++++
T Consensus 358 -Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~-a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 -RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEE-ALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred -hee-EEeeccCCHHHHHHHHHHHHhhhcceecHH-HHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 553 566678899999999999999888887766 48888887776778888899999999999999999999999988
Q ss_pred HHHHh
Q 007591 572 VERSI 576 (597)
Q Consensus 572 l~rvi 576 (597)
-+-.+
T Consensus 435 ~~Lf~ 439 (456)
T KOG1942|consen 435 TELFL 439 (456)
T ss_pred HHHHH
Confidence 76554
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.35 E-value=2.4e-11 Score=143.58 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=134.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH----
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~---- 404 (597)
..|+|++++.+.+.+.+...+..- ....+|...+||+||+|||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 458999999999988887532100 0012344568999999999999999999976 578999999877442
Q ss_pred -hhccc-----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---------CC
Q 007591 405 -YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (597)
Q Consensus 405 -~vG~~-----~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------~~ 469 (597)
..|.. ......+....+....+||+|||||.+.+ .+.+.|++.|+.-. .-
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 22211 01112334444555567999999997753 34466666665321 12
Q ss_pred CcEEEEeecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc------
Q 007591 470 SAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 518 (597)
Q Consensus 470 ~~VIVIaaTNrpd-------------------------~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~------ 518 (597)
.+.+||+|||... .+.|.|+. |+|.++.+.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4578889998731 12355665 99999999999999999998877652
Q ss_pred -CC--CCCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHHHH
Q 007591 519 -KE--LPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLA 555 (597)
Q Consensus 519 -~~--l~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal~A 555 (597)
.+ +.+.++ .++.|+.... .+..+.|.++++......
T Consensus 785 ~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 785 ERKITLELSDA-ALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HCCCeecCCHH-HHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 22 223333 2666777643 456789999888876544
No 153
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=4.2e-11 Score=133.37 Aligned_cols=212 Identities=22% Similarity=0.299 Sum_probs=134.1
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc------------------
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------------------ 389 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el------------------ 389 (597)
...|+||.|++.+++.+.-.+ ....+++|.||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 348999999999877665443 234579999999999999999998632
Q ss_pred ----------CCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHH
Q 007591 390 ----------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (597)
Q Consensus 390 ----------g~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~L 459 (597)
..||...+++......+|.+...-...+..|.. .+|||||++.+.. .++..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~---------------~~~~~L 315 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR---------------SVLDAL 315 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH---------------HHHHHH
Confidence 235554444333233333332222234444444 4999999998753 233445
Q ss_pred HHhhcCCC-----------CCCcEEEEeecCCC------C-----------------CCChhhhCCCCcceEEEecCCCH
Q 007591 460 LTEMDGFD-----------SNSAVIVLGATNRS------D-----------------VLDPALRRPGRFDRVVMVETPDK 505 (597)
Q Consensus 460 L~emd~~~-----------~~~~VIVIaaTNrp------d-----------------~Ld~aLlRpgRFd~~I~v~~Pd~ 505 (597)
+..|+... -..++.+|+++|.. + .|...|+. |||.++.++.++.
T Consensus 316 ~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~ 393 (499)
T TIGR00368 316 REPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPP 393 (499)
T ss_pred HHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCH
Confidence 55554321 13578999999863 1 47788888 9999999997754
Q ss_pred HHH-------------HHHHHHHHhc----CCC---CCCCCCCHHHH----------------HHhCCCCCHHHHHHHHH
Q 007591 506 IGR-------------EAILKVHVSK----KEL---PLAKDIDLGDI----------------ASMTTGFTGADLANLVN 549 (597)
Q Consensus 506 ~eR-------------~~ILk~~l~~----~~l---~l~~dvdl~~L----------------A~~t~G~SgaDL~~Lv~ 549 (597)
++. ..+.+.+-.+ .+. .+...+....| +....++|.+....+++
T Consensus 394 ~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr 473 (499)
T TIGR00368 394 EKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK 473 (499)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 432 2232221111 010 11111111111 12233579999999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHH
Q 007591 550 EAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
-|.-+|..++...|+.+|+.+|+.
T Consensus 474 vArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 474 VARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999984
No 154
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.33 E-value=7.9e-12 Score=140.01 Aligned_cols=213 Identities=20% Similarity=0.269 Sum_probs=134.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~ 404 (597)
..+|++++|.++..+.+.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 47799999999998888887765322 23469999999999999999998754 679999999866432
Q ss_pred -----hhccch--------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-----
Q 007591 405 -----YVGMGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF----- 466 (597)
Q Consensus 405 -----~vG~~~--------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~----- 466 (597)
..|... ..-..+|+.|.. ..||||||+.|....+ ..|+..++.-
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q---------------~~Ll~~L~~~~~~r~ 339 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQ---------------TRLLRVLEEREVVRV 339 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHHHH---------------HHHHHHHhcCcEEec
Confidence 112100 012345555543 3899999999875433 3344443321
Q ss_pred CC----CCcEEEEeecCCC--CCC-----ChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCCCCCCC
Q 007591 467 DS----NSAVIVLGATNRS--DVL-----DPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELPLAKDI 527 (597)
Q Consensus 467 ~~----~~~VIVIaaTNrp--d~L-----d~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~----~~l~l~~dv 527 (597)
.. ...+.+|++|+.. +.+ .+.|.. |+. .+.+..|+..+|.+ ++.+++.+ .++++.++.
T Consensus 340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 416 (526)
T TIGR02329 340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA 416 (526)
T ss_pred CCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 11 2246788888765 112 222222 332 46777788777764 44444443 233343332
Q ss_pred CHHH-------HHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 528 DLGD-------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 528 dl~~-------LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
+.. |..+.+-.+.++|.+++.+++..+.......|+.+++....
T Consensus 417 -~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 417 -AQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred -HHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 333 66666666889999999999887643334578888865433
No 155
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.32 E-value=4.6e-12 Score=138.93 Aligned_cols=218 Identities=26% Similarity=0.374 Sum_probs=141.4
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
....+|+||+|..++...+.+.+... ++.+-.|||.|.+||||.++|++|.+.. +-||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 34689999999999877777766543 3445679999999999999999998865 7899999998665
Q ss_pred HHh-----hcc------chHH--HHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhh--cCCC
Q 007591 403 ELY-----VGM------GASR--VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM--DGFD 467 (597)
Q Consensus 403 ~~~-----vG~------~~~~--vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~em--d~~~ 467 (597)
+.. .|. ++.+ -..+|+.|..+ .||+|||..|...-| .-+-..|++- ....
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~LQ------------aKLLRVLQEkei~rvG 373 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLPLQ------------AKLLRVLQEKEIERVG 373 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHHHH------------HHHHHHHhhceEEecC
Confidence 432 111 1122 34567766655 899999988764433 2223333331 1111
Q ss_pred ----CCCcEEEEeecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HHHHHHhc----CC--CC-CCC
Q 007591 468 ----SNSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE--LP-LAK 525 (597)
Q Consensus 468 ----~~~~VIVIaaTNrpd~Ld~aLlRpgRFd-------~~I~v~~Pd~~eR~~----ILk~~l~~----~~--l~-l~~ 525 (597)
-...|.||||||+. |-. +...|+|- .++.+..|...+|.+ +...++.+ .+ ++ +.+
T Consensus 374 ~t~~~~vDVRIIAATN~n--L~~-~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~ 450 (560)
T COG3829 374 GTKPIPVDVRIIAATNRN--LEK-MIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSP 450 (560)
T ss_pred CCCceeeEEEEEeccCcC--HHH-HHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCH
Confidence 13479999999985 222 22334442 266777888888874 33333332 22 12 333
Q ss_pred CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH-HHHHH
Q 007591 526 DIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI-HAVER 574 (597)
Q Consensus 526 dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~-~Al~r 574 (597)
++ +..|.++-+--+.++|+|++.++...+ .+...|+.+|+. .++..
T Consensus 451 ~a-~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l~~ 497 (560)
T COG3829 451 DA-LALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFALEE 497 (560)
T ss_pred HH-HHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhhcc
Confidence 32 566666666668899999999999854 344457777776 55544
No 156
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=3.5e-11 Score=129.30 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=125.1
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------eE----
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FI---- 394 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-------fi---- 394 (597)
..+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+. +.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3467899999999999999988763 3567789999999999999999999976221 00
Q ss_pred E---e-ecc-----------hhHHHhh---c--------cchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCcc
Q 007591 395 S---C-SAS-----------EFVELYV---G--------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRF 444 (597)
Q Consensus 395 ~---i-s~s-----------e~~~~~v---G--------~~~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~ 444 (597)
. + .|. ++..... + -....+|++.+.+. ...|.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0 0 010 1100000 1 12244666665543 34577999999998853
Q ss_pred ccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCC
Q 007591 445 RIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA 524 (597)
Q Consensus 445 ~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~ 524 (597)
...|.||..++.. ..+.++|.+|+.++.+.+.+++ |. ..+.+++|+.++..+++...... .
T Consensus 156 ---------~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~- 216 (365)
T PRK07471 156 ---------NAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----L- 216 (365)
T ss_pred ---------HHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----C-
Confidence 4458899988843 3455677788888888888877 54 38999999999999998876421 1
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHH
Q 007591 525 KDIDLGDIASMTTGFTGADLANLV 548 (597)
Q Consensus 525 ~dvdl~~LA~~t~G~SgaDL~~Lv 548 (597)
.+..+..++..+.| +++...+++
T Consensus 217 ~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 217 PDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 11123567777766 555544444
No 157
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.32 E-value=7.9e-12 Score=140.10 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=132.1
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHh-----------cCCCeEEee
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----------AEVPFISCS 397 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~e-----------lg~pfi~is 397 (597)
.+|++++|.+.+.+.+.+.+..+.. ....|||+|++||||+++|++|... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5799999999998888888765322 2346999999999999999999877 467999999
Q ss_pred cchhHHH-----hhccc------h--HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhc
Q 007591 398 ASEFVEL-----YVGMG------A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 398 ~se~~~~-----~vG~~------~--~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd 464 (597)
|..+.+. ..|.. + ..-..+|+.|..+ .||||||+.|....+ ..|+..++
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp~~~Q---------------~kLl~~L~ 347 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMPLPLQ---------------TRLLRVLE 347 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCCHHHH---------------HHHHhhhh
Confidence 9876432 11211 0 0112356655443 899999999875433 33444443
Q ss_pred CC-----C----CCCcEEEEeecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HHHHHHhc----CC
Q 007591 465 GF-----D----SNSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE 520 (597)
Q Consensus 465 ~~-----~----~~~~VIVIaaTNrpd~Ld~aLlRpgRFd-------~~I~v~~Pd~~eR~~----ILk~~l~~----~~ 520 (597)
.- . -...+.||++||.. |. .+...|+|. ..+.+..|...+|.+ ++++++++ .+
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 21 1 12356889898765 11 122223332 156777888888764 44555543 34
Q ss_pred CCCCCCCC------HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 007591 521 LPLAKDID------LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 521 l~l~~dvd------l~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
.++.+++- ++.|..+.+-.+.++|.+++.+++..+.......|+.+++.
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 44443321 14455555556889999999999886543323456665553
No 158
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.1e-11 Score=139.90 Aligned_cols=194 Identities=25% Similarity=0.376 Sum_probs=137.4
Q ss_pred ccccCChHHHHHHHHHHHH----hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC---CCeEEeecchhHHH
Q 007591 332 ADVAGVDEAKEELEEIVEF----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~----l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~se~~~~ 404 (597)
..|+|++++.+.+...+.. +.+| .+|-...||.||+|+|||-||+++|..+. ..++.+++|+|.++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp-------~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDP-------NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 3589999999999888865 3333 23334677899999999999999999986 89999999999875
Q ss_pred ------------hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----
Q 007591 405 ------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----- 467 (597)
Q Consensus 405 ------------~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~----- 467 (597)
|+|..+. ..+-+..++...|||++|||+.-. -.++|-||+.||.-.
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH---------------pdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH---------------PDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC---------------HHHHHHHHHHhcCCeeecCC
Confidence 4554332 244555666667999999998754 347788898888421
Q ss_pred ----CCCcEEEEeecCCC----------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 007591 468 ----SNSAVIVLGATNRS----------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (597)
Q Consensus 468 ----~~~~VIVIaaTNrp----------------------------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~ 515 (597)
.-.+.+||+|||-- ....|+++. |+|.+|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 12468999999852 012366666 99999999999999999998887
Q ss_pred HhcC-------CCC--CCCCCCHHHHHHhCC--CCCHHHHHHHHHHHH
Q 007591 516 VSKK-------ELP--LAKDIDLGDIASMTT--GFTGADLANLVNEAA 552 (597)
Q Consensus 516 l~~~-------~l~--l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAa 552 (597)
+.+. ++. +.++ ..+.|+..+. .|-.+-|++++++-.
T Consensus 705 L~~l~~~L~~~~i~l~~s~~-a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 705 LNRLAKRLAERGITLELSDE-AKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred HHHHHHHHHhCCceEEECHH-HHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 7642 222 2222 2555666553 344566776666543
No 159
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.31 E-value=1.6e-10 Score=117.78 Aligned_cols=192 Identities=14% Similarity=0.194 Sum_probs=119.3
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCC-CeE--E-ee----cchhHHH---hhccc---h------HHHHHHH-HHHHhcC
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEV-PFI--S-CS----ASEFVEL---YVGMG---A------SRVRDLF-ARAKKEA 424 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~-pfi--~-is----~se~~~~---~vG~~---~------~~vr~lF-~~A~~~~ 424 (597)
..++|+||+|+|||++++.+++++.. .+. . ++ ..++... ..|.. . ..+.+.+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 222 1 11 1122111 11211 1 1122222 2233566
Q ss_pred CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC--CCCCC----hhhhCCCCcceEE
Q 007591 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR--SDVLD----PALRRPGRFDRVV 498 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr--pd~Ld----~aLlRpgRFd~~I 498 (597)
+++|+|||+|.+.... ...+..+..... .....+.|+.+... .+.+. ..+.+ |+...+
T Consensus 124 ~~vliiDe~~~l~~~~------------~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 124 RALLVVDEAQNLTPEL------------LEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CeEEEEECcccCCHHH------------HHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 7899999999874211 112222222111 11222333333221 12221 23444 777789
Q ss_pred EecCCCHHHHHHHHHHHHhcCCC----CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 007591 499 MVETPDKIGREAILKVHVSKKEL----PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 499 ~v~~Pd~~eR~~ILk~~l~~~~l----~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (597)
.+++.+.++..+++...+...+. .+.++ .++.|++.+.|. ++.|..+++.|...|..++...|+.+++++++..
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~-~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEG-AFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHH-HHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999998875432 34333 478889999884 6779999999999999999999999999999876
Q ss_pred H
Q 007591 575 S 575 (597)
Q Consensus 575 v 575 (597)
.
T Consensus 266 ~ 266 (269)
T TIGR03015 266 I 266 (269)
T ss_pred h
Confidence 4
No 160
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.31 E-value=5e-11 Score=140.40 Aligned_cols=200 Identities=20% Similarity=0.262 Sum_probs=130.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH-----
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----- 403 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~----- 403 (597)
+.|+|++++++.+...+...+..- ....+|...+||+||+|||||++|+++|..+ +.+++.++++++.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 458999999999988876422100 0011222357899999999999999999987 47899999888743
Q ss_pred Hhhccc-----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---------CC
Q 007591 404 LYVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (597)
Q Consensus 404 ~~vG~~-----~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------~~ 469 (597)
...|.. ......+.+..+....+||+|||+|.+.+ .+.+.|++.|+... ..
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------HHHHHHHHHhccCceecCCCcEEec
Confidence 222211 11123455555566668999999998753 35577777777421 12
Q ss_pred CcEEEEeecCCCCC-------------------------------------CChhhhCCCCcceEEEecCCCHHHHHHHH
Q 007591 470 SAVIVLGATNRSDV-------------------------------------LDPALRRPGRFDRVVMVETPDKIGREAIL 512 (597)
Q Consensus 470 ~~VIVIaaTNrpd~-------------------------------------Ld~aLlRpgRFd~~I~v~~Pd~~eR~~IL 512 (597)
.+.++|+|||.... +.|.++. |+|.+|.|.+.+.++..+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 46889999885311 1245565 99999999999999999998
Q ss_pred HHHHhc-------CCC--CCCCCCCHHHHHHhC--CCCCHHHHHHHHHHHH
Q 007591 513 KVHVSK-------KEL--PLAKDIDLGDIASMT--TGFTGADLANLVNEAA 552 (597)
Q Consensus 513 k~~l~~-------~~l--~l~~dvdl~~LA~~t--~G~SgaDL~~Lv~eAa 552 (597)
+..+.+ +++ .+.+++ .+.|+... ..+-.+.|..+++.-.
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~-~~~La~~~~~~~~GAR~l~r~i~~~i 778 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERI-KTLLIEEGYNPLYGARPLRRAIMRLL 778 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHH-HHHHHHhcCCCCCChhhHHHHHHHHH
Confidence 877764 222 222332 55566642 2333566766666543
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=6.2e-11 Score=139.98 Aligned_cols=201 Identities=21% Similarity=0.289 Sum_probs=126.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH----
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~---- 404 (597)
+.|+|++++.+.+...+...+..-. ...+|...+||+||+|||||++|+++|..+ +.+|+.++++++.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhccc---CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHH
Confidence 4689999999998888865331000 001222358999999999999999999876 568999999887543
Q ss_pred -hhccc-----hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC--C-------CC
Q 007591 405 -YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--D-------SN 469 (597)
Q Consensus 405 -~vG~~-----~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~--~-------~~ 469 (597)
..|.. ...-..+....+....+||+|||++.+.+ .+.+.|+..|+.. . ..
T Consensus 645 ~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 645 RLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred HHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceecCCceEEee
Confidence 12111 01111122233334447999999987653 2446666666531 1 12
Q ss_pred CcEEEEeecCCC-------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc------
Q 007591 470 SAVIVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 518 (597)
Q Consensus 470 ~~VIVIaaTNrp-------------------------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~------ 518 (597)
.+.+||+|||.. ..+.|+|+. |+|.++.+.+++.++..+|++..+.+
T Consensus 710 rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~ 787 (857)
T PRK10865 710 RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLE 787 (857)
T ss_pred cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 346788899863 123467777 99999999999999999998877754
Q ss_pred -CCCCC--CCCCCHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 007591 519 -KELPL--AKDIDLGDIASMTT--GFTGADLANLVNEAAL 553 (597)
Q Consensus 519 -~~l~l--~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal 553 (597)
.++.+ .++ .++.|+.... .+-.+.|.++++.-..
T Consensus 788 ~~gi~l~is~~-al~~L~~~gy~~~~GARpL~r~I~~~i~ 826 (857)
T PRK10865 788 ERGYEIHISDE-ALKLLSENGYDPVYGARPLKRAIQQQIE 826 (857)
T ss_pred hCCCcCcCCHH-HHHHHHHcCCCccCChHHHHHHHHHHHH
Confidence 13322 222 2455554332 2234678777776543
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.7e-11 Score=135.25 Aligned_cols=207 Identities=24% Similarity=0.325 Sum_probs=147.0
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEE
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~ 395 (597)
...-.+|-|+|.++....+-+++. .+..++-+|.|+||+|||.++..+|.+. +..+++
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 345678889999987666666553 2344567999999999999999999864 567788
Q ss_pred eecchhHH--HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE
Q 007591 396 CSASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 396 is~se~~~--~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI 473 (597)
++...++. +|.|+.+.+++.+++......+.||||||||.+.+...... +..| .-|-|.-.+. +..+-
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G--~a~D----AaNiLKPaLA----RGeL~ 301 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG--GAMD----AANLLKPALA----RGELR 301 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc--cccc----hhhhhHHHHh----cCCeE
Confidence 88777755 68999999999999999988899999999999986543211 0111 1122222222 56688
Q ss_pred EEeecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhC-----CCC
Q 007591 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMT-----TGF 539 (597)
Q Consensus 474 VIaaTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~~t-----~G~ 539 (597)
+|+||...+ .=|+||-| ||. .|.|..|+.++-..||+-.-.++ ++.+.++. +...+..+ ..+
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A-l~aAv~LS~RYI~dR~ 377 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA-LVAAVTLSDRYIPDRF 377 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH-HHHHHHHHHhhcccCC
Confidence 888886542 44999999 997 89999999999999998876653 33333332 33333332 334
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 007591 540 TGADLANLVNEAALLAGRL 558 (597)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~ 558 (597)
-|.....++.+|+......
T Consensus 378 LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 378 LPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred CCchHHHHHHHHHHHHHhc
Confidence 5566778999988766543
No 163
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.30 E-value=8.5e-11 Score=124.46 Aligned_cols=132 Identities=30% Similarity=0.376 Sum_probs=89.1
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHH------HHHHH--hcCC--eEEEEcCcch
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDL------FARAK--KEAP--SIIFIDEIDA 435 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~l------F~~A~--~~~P--~ILfIDEIDa 435 (597)
.++||.||||||||++|+++|..++.+|+.+.|..........+....... |.... -... +|+++|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 469999999999999999999999999999999755433211111111111 00000 0001 4999999987
Q ss_pred hhhhcCCccccccchHHHHHHHHHHHhhcC----------CCCCCcEEEEeecC-----CCCCCChhhhCCCCcceEEEe
Q 007591 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDG----------FDSNSAVIVLGATN-----RSDVLDPALRRPGRFDRVVMV 500 (597)
Q Consensus 436 L~~~r~~~~~~~~~~e~e~~Ln~LL~emd~----------~~~~~~VIVIaaTN-----rpd~Ld~aLlRpgRFd~~I~v 500 (597)
..+ .+.+.|+..|+. +.-...++||+|.| ....|++++++ ||-..+.+
T Consensus 124 a~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 124 APP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred CCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 543 344666666664 33456889999999 44688999999 99889999
Q ss_pred cCCCHH-HHHHHHHH
Q 007591 501 ETPDKI-GREAILKV 514 (597)
Q Consensus 501 ~~Pd~~-eR~~ILk~ 514 (597)
+.|+.+ +...++..
T Consensus 187 ~yp~~~~e~~~i~~~ 201 (329)
T COG0714 187 DYPDSEEEERIILAR 201 (329)
T ss_pred CCCCchHHHHHHHHh
Confidence 999544 44444433
No 164
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.30 E-value=4.2e-11 Score=136.48 Aligned_cols=104 Identities=24% Similarity=0.358 Sum_probs=68.6
Q ss_pred CcEEEEeecCCC--CCCChhhhCCCCcc---eEEEec--CCC-HHHHHHHHHHH---HhcCC-CC-CCCCCCHHHHHH--
Q 007591 470 SAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVE--TPD-KIGREAILKVH---VSKKE-LP-LAKDIDLGDIAS-- 534 (597)
Q Consensus 470 ~~VIVIaaTNrp--d~Ld~aLlRpgRFd---~~I~v~--~Pd-~~eR~~ILk~~---l~~~~-l~-l~~dvdl~~LA~-- 534 (597)
..+.||+++|.. ..++++|+. ||+ ..+.++ .|+ .+.+.++++.. +++.+ ++ ++++ .++.|.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~-Av~~Li~~~ 343 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRD-AVEEIVREA 343 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHH-HHHHHHHHH
Confidence 368899999875 578999998 998 666654 344 55555554433 33321 22 2222 1333321
Q ss_pred --hCC-----CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 007591 535 --MTT-----GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 535 --~t~-----G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (597)
... ..+.++|.+++++|...|..++...|+.+|+.+|++...
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 135699999999998888888889999999999987654
No 165
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.29 E-value=1.4e-10 Score=116.16 Aligned_cols=196 Identities=22% Similarity=0.333 Sum_probs=141.3
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
..+.+.+.+++|.+.+++.|.+-...+-. ..+.++|||+|..||||++|+||+.++. +..++.|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 44678999999999999999877665432 4677899999999999999999998876 677899988877
Q ss_pred HHHhhccchHHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--CCCcEEEEeec
Q 007591 402 VELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGAT 478 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--~~~~VIVIaaT 478 (597)
.. +-.+++..+.. ..-|||+|++-- ++-+.....|...|||-- ...+|++.||+
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF--------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF--------------EEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC--------------CCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 44 34566665543 356999999721 111233455666677642 24689999999
Q ss_pred CCCCCCChhh--------------------hCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHHH--HHh
Q 007591 479 NRSDVLDPAL--------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDI--ASM 535 (597)
Q Consensus 479 Nrpd~Ld~aL--------------------lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d-vdl~~L--A~~ 535 (597)
|+...|.+.+ .-..||...+.|.+++.++..+|+..+++..+++++++ .+.+.+ |..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9975554221 22359999999999999999999999999888877532 223333 334
Q ss_pred CCCCCHHHHHHHHHHH
Q 007591 536 TTGFTGADLANLVNEA 551 (597)
Q Consensus 536 t~G~SgaDL~~Lv~eA 551 (597)
-.|-||+-.-+.++..
T Consensus 262 rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 262 RGGRSGRVAWQFIRDL 277 (287)
T ss_pred cCCCccHhHHHHHHHH
Confidence 4567888777776654
No 166
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.28 E-value=6.9e-11 Score=132.32 Aligned_cols=223 Identities=20% Similarity=0.173 Sum_probs=134.5
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-CeEEe---ecchhHHHhhcc
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISC---SASEFVELYVGM 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-pfi~i---s~se~~~~~vG~ 408 (597)
+|.|++.+|..|.-.+-.-..+..-.....+...+|||+|+||||||++|++++..+.. +|... ++..+.......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 48899998877655442211111000112233457999999999999999999997643 33321 221121100000
Q ss_pred ---chHHH-HHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----------CCCcEE
Q 007591 409 ---GASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVI 473 (597)
Q Consensus 409 ---~~~~v-r~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----------~~~~VI 473 (597)
++..+ ...+..| ...+++|||+|.+.... ...|+..|+.-. -+..+.
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~~---------------q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDSD---------------RTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCHHH---------------HHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 00000 0111222 23499999999886332 244445554211 135689
Q ss_pred EEeecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHHHHhcCC------C-C----------
Q 007591 474 VLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKE------L-P---------- 522 (597)
Q Consensus 474 VIaaTNrpd-------------~Ld~aLlRpgRFd~~I~v-~~Pd~~eR~~ILk~~l~~~~------l-~---------- 522 (597)
||||+|..+ .|++++++ |||..+.+ +.|+.+...+|+++.+.... . .
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 999999752 68999999 99986655 78999998888887543210 0 0
Q ss_pred ----------CCCCCC---HHHHHH-----h----------CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 007591 523 ----------LAKDID---LGDIAS-----M----------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 523 ----------l~~dvd---l~~LA~-----~----------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (597)
+.+.+. .+.|.. + ..+.|++.+..+++-|...|..+.+..|+.+|+.+|++-
T Consensus 424 ~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 424 RKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 000111 111110 1 225688999999999999999999999999999999875
Q ss_pred H
Q 007591 575 S 575 (597)
Q Consensus 575 v 575 (597)
+
T Consensus 504 ~ 504 (509)
T smart00350 504 L 504 (509)
T ss_pred H
Confidence 4
No 167
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.28 E-value=3.1e-11 Score=135.07 Aligned_cols=208 Identities=22% Similarity=0.289 Sum_probs=131.8
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh-
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~- 405 (597)
++.+++|.+...+.+.+.+..+. ..+..|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57889999999888888777643 234579999999999999999998864 5799999998764321
Q ss_pred ----hccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-------
Q 007591 406 ----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (597)
Q Consensus 406 ----vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~------- 467 (597)
.|... ......|+.|. ...|||||||.|....+ ..|+..++.-.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ---------------AKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH---------------HHHHHHHhcCCEeeCCCC
Confidence 12100 00112344443 34899999999874432 33444443211
Q ss_pred --CCCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CC---CCCCCCC
Q 007591 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDI 527 (597)
Q Consensus 468 --~~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~----~~---l~l~~dv 527 (597)
....+.||++|+.. ..+.+.|.. |+. .+.+..|+..+|.+ ++++++++ .+ ..+.++
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~- 392 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA- 392 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-
Confidence 12367889999865 123333333 333 56777888888764 33333332 22 233333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC---ccccHHHHH
Q 007591 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNK---VVVEKIDFI 569 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~---~~It~~d~~ 569 (597)
.+..|..+.+-.+.++|++++++|+..+..... ..|+.+++.
T Consensus 393 a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 393 AQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 266677777666889999999999988753211 145555554
No 168
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.28 E-value=8.7e-12 Score=140.23 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=131.4
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
.+..+|++++|.+...+++.+.+..+.. ....|||+|++||||+++|++|+... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3457899999999988888877765432 34469999999999999999999874 5799999998763
Q ss_pred HHh-----hccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---
Q 007591 403 ELY-----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--- 467 (597)
Q Consensus 403 ~~~-----vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--- 467 (597)
+.. .|... ......|+.+ ...+|||||||.|....+ ..|+..++.-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ---------------AKLLRVLQEGEFER 321 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH---------------HHHHHHHhcCcEEE
Confidence 321 11100 0001123333 245999999999875433 34444443211
Q ss_pred --C----CCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhc----CC--CCCC
Q 007591 468 --S----NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KE--LPLA 524 (597)
Q Consensus 468 --~----~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~----~ILk~~l~~----~~--l~l~ 524 (597)
. ...+.+|++|+.. ..+.+.|.. |+. .+.+..|...+|. .++..++.+ .+ ..+.
T Consensus 322 ~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred CCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 1247888888764 122233332 333 4456666665553 455555443 22 2333
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 007591 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 525 ~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
++ .+..|..+.+..+.++|.++++.|+..+ ....|+.+|+.
T Consensus 399 ~~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 399 PS-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 33 2666777776668899999999988765 34678888875
No 169
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=8.7e-11 Score=123.52 Aligned_cols=169 Identities=17% Similarity=0.296 Sum_probs=116.9
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC--------CeEEeecchh
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------PFISCSASEF 401 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~--------pfi~is~se~ 401 (597)
+|+||+|++.+++.|...+.. .+.|+.+||+||+|+|||++|+++|..+.+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 699999999999999888742 355677899999999999999999997632 122222110
Q ss_pred HHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEee
Q 007591 402 VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaa 477 (597)
. ...+...++++.+.+.. ....|++|||+|.+.. ...|.||..++.. ..++++|.+
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~---------------~a~naLLK~LEep--p~~t~~il~ 129 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE---------------QAQNAFLKTIEEP--PKGVFIILL 129 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH---------------HHHHHHHHHhcCC--CCCeEEEEE
Confidence 0 11123457777765533 3346999999998853 3348899999853 344555556
Q ss_pred cCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007591 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 478 TNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (597)
|+.++.|.+.+++ |. ..+.+.+|+.++....+...+. .+.++ ..+.++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~-~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN----DIKEE-EKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc----CCCHH-HHHHHHHHcCC
Confidence 6778999999988 43 3899999999998888876542 12222 25566766665
No 170
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.26 E-value=1.6e-10 Score=127.09 Aligned_cols=213 Identities=17% Similarity=0.154 Sum_probs=127.2
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEeecc-hhHHHhhccc
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSAS-EFVELYVGMG 409 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is~s-e~~~~~vG~~ 409 (597)
.|+|.+++.+.+..++. ...+|||+||||||||++|++++..++. +|....+. .......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 37888887766665542 2346999999999999999999987642 55554443 1112222211
Q ss_pred -hHHH--HHHHHHHHhc---CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------CCCcEEEE
Q 007591 410 -ASRV--RDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVL 475 (597)
Q Consensus 410 -~~~v--r~lF~~A~~~---~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------~~~~VIVI 475 (597)
-... ..-|.....+ ...+||+|||..+.+ .+.+.||..|+.-. +-...+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0000 1122222211 223999999986543 45577777774211 11123444
Q ss_pred eecCCCC---CCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhc--CCCCCCCCCC--------------------H
Q 007591 476 GATNRSD---VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSK--KELPLAKDID--------------------L 529 (597)
Q Consensus 476 aaTNrpd---~Ld~aLlRpgRFd~~I~v~~Pd-~~eR~~ILk~~l~~--~~l~l~~dvd--------------------l 529 (597)
+|||... ...+++.. ||-..+.+++|+ .++..+++...... ...+...-+. .
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 4556432 23358888 998889999996 45667788764321 1111111111 1
Q ss_pred H---HHHHh---C---CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 007591 530 G---DIASM---T---TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 530 ~---~LA~~---t---~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~ 577 (597)
+ .|+.. + ...|++-...+++-|...|...++..|+.+|+. .+.-++.
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 1 22221 2 226888889999999999999999999999999 6666654
No 171
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.25 E-value=4.6e-11 Score=134.06 Aligned_cols=207 Identities=20% Similarity=0.274 Sum_probs=127.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~ 403 (597)
...+|++++|.+...+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 457899999999877766665544321 23359999999999999999997654 47999999987643
Q ss_pred H-----hhccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC--CC--
Q 007591 404 L-----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--FD-- 467 (597)
Q Consensus 404 ~-----~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~--~~-- 467 (597)
. ..|... .....+|+.|.. ..|||||||.|....+ ..|+..++. +.
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~~~Q---------------~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSPRMQ---------------AKLLRFLNDGTFRRV 330 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCHHHH---------------HHHHHHHhcCCcccC
Confidence 2 112110 011234555443 4899999999865433 333333332 11
Q ss_pred -----CCCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----H----HHHHHhcCCC---CCC
Q 007591 468 -----SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----I----LKVHVSKKEL---PLA 524 (597)
Q Consensus 468 -----~~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~----I----Lk~~l~~~~l---~l~ 524 (597)
....+.||++|+.+ ..+.+.|.. |+. .+.+..|...+|.+ + ++.+..+.+. .+.
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 12357888888764 123344444 544 47777888877763 2 2333333332 233
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHH
Q 007591 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (597)
Q Consensus 525 ~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (597)
+++ ++.|..+.+..+.++|.+++.+|+..+ ....|+.+|+
T Consensus 408 ~~a-~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 408 ADL-NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHH-HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 332 555666655557799999999988764 3345666664
No 172
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.25 E-value=5.1e-11 Score=126.23 Aligned_cols=194 Identities=23% Similarity=0.259 Sum_probs=122.9
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH--
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~-- 404 (597)
.+++++|.+...+.+.+.+..+. ..+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999998888877776542 234569999999999999999998754 579999999876321
Q ss_pred ---hhccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC--CC----
Q 007591 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DS---- 468 (597)
Q Consensus 405 ---~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~--~~---- 468 (597)
+.|... ......|..|. ...|||||||.|....+ ..|+..++.- ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q---------------~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ---------------EKLLRVIEYGELERVGGS 135 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 112110 01122344443 34899999999874432 3344444321 11
Q ss_pred ---CCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCCCC----CCCC
Q 007591 469 ---NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKELP----LAKD 526 (597)
Q Consensus 469 ---~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~----~~~l~----l~~d 526 (597)
...+.||++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ ++.+++. +.+.+ +.++
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~ 212 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER 212 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 2357888888764 244555655 564 45666777777753 4444432 22222 2333
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 527 IDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 527 vdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.+..|..+..-.+.++|.++++.|+..+
T Consensus 213 -al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 213 -ARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred -HHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 2566667776668899999999988754
No 173
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.24 E-value=3.9e-11 Score=127.37 Aligned_cols=190 Identities=22% Similarity=0.249 Sum_probs=118.0
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh-----
Q 007591 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----- 405 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~----- 405 (597)
++|.+.+.+.+.+.+..+. .....|||+|++||||+++|++|.... +.||+.++|..+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677777666666665532 234569999999999999999998754 5799999998653221
Q ss_pred hccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---------CC
Q 007591 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (597)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------~~ 469 (597)
.|... .....+|+.|. ..+|||||||.|....+ ..|+..++.-. ..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ---------------EKLLRVIEYGEFERVGGSQTLQ 132 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH---------------HHHHHHHHcCcEEecCCCceec
Confidence 11100 01122344443 34999999999875433 33444443211 12
Q ss_pred CcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCC----CCCCCCCHH
Q 007591 470 SAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KEL----PLAKDIDLG 530 (597)
Q Consensus 470 ~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~----~~l----~l~~dvdl~ 530 (597)
..+.||++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++.+ .+. .+.++ .+.
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~ 208 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-ARE 208 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHH
Confidence 467889898764 133445544 554 46677787777754 33443332 222 23333 266
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 531 DIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.|..+.+..+.++|.+++..|+..+
T Consensus 209 ~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhC
Confidence 6777776668899999999988765
No 174
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.24 E-value=3.2e-11 Score=138.41 Aligned_cols=211 Identities=19% Similarity=0.261 Sum_probs=132.5
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH-
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE- 403 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~- 403 (597)
..+|++++|.+.....+.+.+..+. .....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999988777776665432 223459999999999999999998865 57999999986632
Q ss_pred ----Hhhccc--h--HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-----CC--
Q 007591 404 ----LYVGMG--A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS-- 468 (597)
Q Consensus 404 ----~~vG~~--~--~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-----~~-- 468 (597)
.+.|.. + ......|+.| ...+||||||+.|....+ ..|+..++.- ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q---------------~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ---------------SALLQVLKTGVITRLDSRR 452 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH---------------HHHHHHHhcCcEEeCCCCc
Confidence 122211 0 0001123333 245999999999875433 3344444321 11
Q ss_pred --CCcEEEEeecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HHHHHHhc----CC--CCCCCCCCH
Q 007591 469 --NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE--LPLAKDIDL 529 (597)
Q Consensus 469 --~~~VIVIaaTNrpd~Ld~aLlRpgRFd-------~~I~v~~Pd~~eR~~----ILk~~l~~----~~--l~l~~dvdl 529 (597)
...+.||+||+..- ..+...|+|. ..+.+..|...+|.+ +++.++.+ .+ +.+.++ .+
T Consensus 453 ~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~ 528 (638)
T PRK11388 453 LIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-AL 528 (638)
T ss_pred eEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HH
Confidence 12577898888641 1222223331 156777888888853 34444432 11 233333 36
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 007591 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
+.|..+....+.++|.++++.|+..+ ....|+.+|+...+.
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHLF 569 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhhh
Confidence 66777776668899999999988754 345788888876663
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.24 E-value=2.5e-11 Score=107.66 Aligned_cols=126 Identities=33% Similarity=0.448 Sum_probs=83.4
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCC---eEEeecchhHHH--------------hhccchHHHHHHHHHHHhcCCeE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEFVEL--------------YVGMGASRVRDLFARAKKEAPSI 427 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~p---fi~is~se~~~~--------------~vG~~~~~vr~lF~~A~~~~P~I 427 (597)
+..++|+||||||||++++.+|..+..+ ++.++++..... .........+.++..+....|+|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998765 888887754332 12344566788888888887899
Q ss_pred EEEcCcchhhhhcCCccccccchHHHHHHHHH--HHhhcCCCCCCcEEEEeecCC-CCCCChhhhCCCCcceEEEecCC
Q 007591 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL--LTEMDGFDSNSAVIVLGATNR-SDVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~L--L~emd~~~~~~~VIVIaaTNr-pd~Ld~aLlRpgRFd~~I~v~~P 503 (597)
|+|||++.+....... ..... ..............+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-----------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-----------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999987543210 00000 000111122445688888886 3344444444 88888887655
No 176
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.1e-10 Score=123.07 Aligned_cols=184 Identities=15% Similarity=0.213 Sum_probs=125.8
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCe----------EEeecc
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----------ISCSAS 399 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf----------i~is~s 399 (597)
.|++|+|++++++.|...+.. .+.|..+||+||+|+||+++|.++|..+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999998864 34566899999999999999999998753210 011111
Q ss_pred hhHH--------------Hh---hc--------cchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccch
Q 007591 400 EFVE--------------LY---VG--------MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (597)
Q Consensus 400 e~~~--------------~~---vG--------~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (597)
|+.- .+ .| -....+|++.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1110 00 00 112356666555543 3456999999999863
Q ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHH
Q 007591 451 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 530 (597)
Q Consensus 451 e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~ 530 (597)
...|.||..|+..+ + .++|..|+.++.|-|.+++ |. ..+.|++|+.++..++|+......+ .+.++.
T Consensus 139 ---~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~ 205 (314)
T PRK07399 139 ---AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI----LNINFP 205 (314)
T ss_pred ---HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc----chhHHH
Confidence 34488999998655 3 3455667788999999998 54 3899999999999999987653211 112356
Q ss_pred HHHHhCCCCCHHHHHHHHHH
Q 007591 531 DIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~e 550 (597)
.++....| +++++.++++.
T Consensus 206 ~l~~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHHHHcCC-CHHHHHHHHHH
Confidence 78887777 67666666654
No 177
>PHA02244 ATPase-like protein
Probab=99.23 E-value=3e-10 Score=121.29 Aligned_cols=150 Identities=24% Similarity=0.309 Sum_probs=92.6
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh--h
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~--v 406 (597)
+.+.-+.+..........+..++.. ..+|||+||||||||++|+++|..++.||+.+++. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 3343344444444455555444432 34599999999999999999999999999999842 2111 1
Q ss_pred c---cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh-----hcC-CCCCCcEEEEee
Q 007591 407 G---MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDG-FDSNSAVIVLGA 477 (597)
Q Consensus 407 G---~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e-----md~-~~~~~~VIVIaa 477 (597)
| ....-...-|-.|.. ..++|+|||++.+.+... ..|+.++.. .++ +..+.++.+|+|
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~vq------------~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEAL------------IIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcCCHHHH------------HHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 1 100101112333332 346999999998754322 233333321 111 223467899999
Q ss_pred cCCC-----------CCCChhhhCCCCcceEEEecCCCHHH
Q 007591 478 TNRS-----------DVLDPALRRPGRFDRVVMVETPDKIG 507 (597)
Q Consensus 478 TNrp-----------d~Ld~aLlRpgRFd~~I~v~~Pd~~e 507 (597)
+|.+ ..|+++++. ||- .|+++.|+..|
T Consensus 228 sN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~~E 265 (383)
T PHA02244 228 GNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEKIE 265 (383)
T ss_pred eCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcHHH
Confidence 9973 578999999 996 79999998433
No 178
>PRK04132 replication factor C small subunit; Provisional
Probab=99.23 E-value=1.4e-10 Score=135.19 Aligned_cols=159 Identities=22% Similarity=0.235 Sum_probs=124.2
Q ss_pred eeEEec--CCCChHHHHHHHHHHhc-----CCCeEEeecchhHHHhhccchHHHHHHHHHHHhcC------CeEEEEcCc
Q 007591 367 GVLLVG--LPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEA------PSIIFIDEI 433 (597)
Q Consensus 367 gVLL~G--PPGTGKT~LAkAIA~el-----g~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~------P~ILfIDEI 433 (597)
.-+..| |++.|||++|+++|+++ +.+++.+++++.. +...++++...+.... ..|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 456678 99999999999999997 5689999998752 2346777776654332 369999999
Q ss_pred chhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 007591 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk 513 (597)
|.|... ..+.|+..|+.++ ..+.+|++||.+..+.+++++ |. ..+.|++|+.++....++
T Consensus 640 D~Lt~~---------------AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 640 DALTQD---------------AQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ccCCHH---------------HHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHH
Confidence 999643 3377888888544 456788889999999999988 53 489999999999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007591 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 514 ~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
..+.+.++.+.++ .+..|+..+.| +.+...++++.++.
T Consensus 700 ~I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAA 737 (846)
T ss_pred HHHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9888777776655 58899999987 67777777776543
No 179
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.22 E-value=4.2e-11 Score=131.06 Aligned_cols=206 Identities=25% Similarity=0.363 Sum_probs=133.0
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH-
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 404 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~- 404 (597)
..+.+++|...+.++|.+.+..+... .-.|||+|++||||.++|++|.... +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45678999999999999999876443 3469999999999999999998865 569999999866443
Q ss_pred ----hhccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhc-----CCCC
Q 007591 405 ----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GFDS 468 (597)
Q Consensus 405 ----~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd-----~~~~ 468 (597)
..|... .+-...|+.|..+ .||||||..+...-| ..||..+. ...+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~~Q---------------~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLELQ---------------VKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHHHH---------------HHHHHHHHcCeeEecCC
Confidence 222111 1123356666555 999999998864433 33444433 2222
Q ss_pred ----CCcEEEEeecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HH----HHHHhcCCCCCCCCCC-
Q 007591 469 ----NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----IL----KVHVSKKELPLAKDID- 528 (597)
Q Consensus 469 ----~~~VIVIaaTNrpd~Ld~aLlRpgRFd-------~~I~v~~Pd~~eR~~----IL----k~~l~~~~l~l~~dvd- 528 (597)
+..|-||+|||+. |...+ ..|+|- .++.+..|...||.+ ++ +.++.+.+.+ ...++
T Consensus 270 ~~~i~vdvRiIaaT~~d--L~~~v-~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~ 345 (464)
T COG2204 270 NKPIKVDVRIIAATNRD--LEEEV-AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSP 345 (464)
T ss_pred CcccceeeEEEeecCcC--HHHHH-HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCH
Confidence 3468999999975 22222 224442 378888999999875 33 3333333322 22333
Q ss_pred --HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 007591 529 --LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 529 --l~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
+..|..+.+--+.++|+|++.+++..+ ....|+.+++.
T Consensus 346 ~a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 346 EALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 344444444446699999999988876 33445555543
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.22 E-value=4.7e-11 Score=118.92 Aligned_cols=185 Identities=23% Similarity=0.311 Sum_probs=120.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-C----CCeEEeec
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-E----VPFISCSA 398 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-g----~pfi~is~ 398 (597)
+...+..+.||+|.++..+.|+-+...-. .| +++|.||||||||+-+.++|+++ | --+..+++
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gn-----------mP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGN-----------MP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCC-----------CC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 44567889999999999999988876422 22 59999999999999999999986 3 23455565
Q ss_pred chhHHHhhccchHHHHH---HHHHHHhcC-C---eEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCc
Q 007591 399 SEFVELYVGMGASRVRD---LFARAKKEA-P---SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (597)
Q Consensus 399 se~~~~~vG~~~~~vr~---lF~~A~~~~-P---~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~ 471 (597)
++=. +-..+|. .|.+-+-.- | .||++||+|.+....+ ..|-..|+-+.+..
T Consensus 87 SdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ---------------QAlRRtMEiyS~tt- 144 (333)
T KOG0991|consen 87 SDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ---------------QALRRTMEIYSNTT- 144 (333)
T ss_pred cccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH---------------HHHHHHHHHHcccc-
Confidence 5421 2233333 344433222 2 4999999999874332 22333344344433
Q ss_pred EEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q 007591 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (597)
Q Consensus 472 VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eA 551 (597)
.+..++|..+.+-+.+.+ |.. .+.+...+..+...-+....+..+++..++ .++.+.-..+| |+++.+|..
T Consensus 145 -RFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 145 -RFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred -hhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhccc----hHHHHHHHH
Confidence 444578888888777777 432 445556666666665555666666777666 47777766665 777777763
No 181
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.21 E-value=1.3e-11 Score=122.06 Aligned_cols=119 Identities=27% Similarity=0.417 Sum_probs=72.3
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc--------------------
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-------------------- 389 (597)
.|+||+|++++|..|.-...- ..++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 388999999999999877642 3579999999999999999999843
Q ss_pred --------CCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHH
Q 007591 390 --------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 390 --------g~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~ 461 (597)
..||.....+.-....+|.+....-..+..|..+ |||+||+-.+- ..+++.|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~ef~---------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNEFD---------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTTS----------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhhcC---------------HHHHHHHHH
Confidence 1344444333222223333322122233444444 99999996653 467777877
Q ss_pred hhcCC-----------CCCCcEEEEeecCC
Q 007591 462 EMDGF-----------DSNSAVIVLGATNR 480 (597)
Q Consensus 462 emd~~-----------~~~~~VIVIaaTNr 480 (597)
-|+.- .-..++++|+|+|.
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 77632 11346899999986
No 182
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.21 E-value=4.6e-11 Score=128.74 Aligned_cols=199 Identities=25% Similarity=0.336 Sum_probs=128.8
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHh----cCCCeEEeecchhH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~e----lg~pfi~is~se~~ 402 (597)
....+++++|.+..-+++.+-+..+ .+....||++|++||||+++|+++... .+.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567889999998877777666542 233457999999999999999999753 36799999999775
Q ss_pred HHhhc-----c-------chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC----
Q 007591 403 ELYVG-----M-------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---- 466 (597)
Q Consensus 403 ~~~vG-----~-------~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~---- 466 (597)
+.... . ....-..+|++|..+ +||+|||+.|....+ ..|+..||.-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q---------------~kLl~~le~g~~~r 204 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ---------------EKLLRVLEEGEYRR 204 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCHhHH---------------HHHHHHHHcCceEe
Confidence 53221 1 122335567766655 999999999875433 3455555531
Q ss_pred -----CCCCcEEEEeecCCC--CCCCh--hhhCCCCcceEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCCC--
Q 007591 467 -----DSNSAVIVLGATNRS--DVLDP--ALRRPGRFDRVVMVETPDKIGREA--------ILKVHVSKKELPLAKDI-- 527 (597)
Q Consensus 467 -----~~~~~VIVIaaTNrp--d~Ld~--aLlRpgRFd~~I~v~~Pd~~eR~~--------ILk~~l~~~~l~l~~dv-- 527 (597)
.-...|.+|+||+.. +.+-. .+.+. |+ .+.+..|+..+|.. +++..+.+.+.++..+.
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 123578999998743 22222 33331 33 44666677777753 34444555566555443
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007591 528 DLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
.+..|-....--+.++|.|+|..++..+.
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 13334344333388999999999998884
No 183
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.20 E-value=3.2e-10 Score=118.12 Aligned_cols=146 Identities=23% Similarity=0.304 Sum_probs=99.1
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC----------------------
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------------------- 390 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg---------------------- 390 (597)
+++|.+++...+...+..- .+.|..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 5777777777776665421 13445699999999999999999999875
Q ss_pred --CCeEEeecchhHHHhhccchHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhc
Q 007591 391 --VPFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 391 --~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd 464 (597)
-.++.++.++....- .....++++-+..... ...|++|||+|.+... ..|.++..|+
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~---------------A~nallk~lE 134 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED---------------AANALLKTLE 134 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH---------------HHHHHHHHhc
Confidence 356666666543211 1234455555544333 3569999999999753 4478888887
Q ss_pred CCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH
Q 007591 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (597)
Q Consensus 465 ~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ 510 (597)
..+ .+..+|.+||.+..+-+.++++++ .+.|.+|+......
T Consensus 135 ep~--~~~~~il~~n~~~~il~tI~SRc~---~i~f~~~~~~~~i~ 175 (325)
T COG0470 135 EPP--KNTRFILITNDPSKILPTIRSRCQ---RIRFKPPSRLEAIA 175 (325)
T ss_pred cCC--CCeEEEEEcCChhhccchhhhcce---eeecCCchHHHHHH
Confidence 544 455777788899888888888333 67777754444333
No 184
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=2.5e-10 Score=111.03 Aligned_cols=144 Identities=18% Similarity=0.267 Sum_probs=99.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCC------------------------eEEeecchhHHHhhccchHHHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLFA 418 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------------------fi~is~se~~~~~vG~~~~~vr~lF~ 418 (597)
+.+..+||+||+|+|||++|++++.++... +..+.... ...+...++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 566789999999999999999999986432 12111100 0122356677776
Q ss_pred HHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCc
Q 007591 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (597)
Q Consensus 419 ~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRF 494 (597)
.+.. ....||+|||+|.+... ..+.|+..|+..+ ...++|.+|+.++.+.+++++ |.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~---------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~ 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA---------------AANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH---------------HHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc
Confidence 6654 33569999999998632 3467888887633 344555566677899999988 55
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007591 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 495 d~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (597)
..+.+.+|+.++..++++.. + +.++ .++.++..+.|
T Consensus 148 -~~~~~~~~~~~~~~~~l~~~----g--i~~~-~~~~i~~~~~g 183 (188)
T TIGR00678 148 -QVLPFPPLSEEALLQWLIRQ----G--ISEE-AAELLLALAGG 183 (188)
T ss_pred -EEeeCCCCCHHHHHHHHHHc----C--CCHH-HHHHHHHHcCC
Confidence 38999999999998888775 3 3333 46777777765
No 185
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.19 E-value=4.4e-10 Score=115.43 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=81.3
Q ss_pred EEEeecCC------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 007591 473 IVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 473 IVIaaTNr------------pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~S 540 (597)
++|.+||+ |.-++-.|+. |+- .|...+++.++.++||+..+.+..+.+.++. ++.|......-+
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A-~d~Lt~i~~~ts 394 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDA-LDLLTKIGEATS 394 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHH-HHHHHHhhhhhh
Confidence 66667776 4566667766 543 6777889999999999999999888877763 777777666667
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 007591 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (597)
-+...+|+..|.+.|.+++...++.+|+..++.-.+
T Consensus 395 LRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 395 LRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFL 430 (454)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHh
Confidence 888899999999999999999999999999987655
No 186
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.19 E-value=2.6e-10 Score=132.08 Aligned_cols=196 Identities=22% Similarity=0.304 Sum_probs=125.9
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~ 404 (597)
..+|++++|.+...+.+.+.+..+.. ....|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35788999999998888877765422 23469999999999999999998754 679999999865332
Q ss_pred -----hhccc-------hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC------
Q 007591 405 -----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------ 466 (597)
Q Consensus 405 -----~vG~~-------~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~------ 466 (597)
..|.. .......|+.|. ..+|||||||.|....+ ..|+..++.-
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~~Q---------------~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLELQ---------------PKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHHHH---------------HHHHHHHHhCCEEeCC
Confidence 12210 011223454443 35999999999864432 3344444321
Q ss_pred ---CCCCcEEEEeecCCCC-------CCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCC---CCC
Q 007591 467 ---DSNSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP---LAK 525 (597)
Q Consensus 467 ---~~~~~VIVIaaTNrpd-------~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~----~~l~---l~~ 525 (597)
....++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ +++.++.+ .+.+ +.+
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1124678898987641 22222322 332 56788888888864 34444332 2222 333
Q ss_pred CCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 526 DIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 526 dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
+ .++.|..+.+-.+.++|++++++|+..+
T Consensus 581 ~-al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 581 E-TLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred H-HHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 3 3666777776668899999999998765
No 187
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.19 E-value=3.5e-10 Score=125.84 Aligned_cols=211 Identities=24% Similarity=0.295 Sum_probs=132.1
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC------------------
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------ 390 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg------------------ 390 (597)
..|.++.|+..+++.+.-. .....+++|+||||+|||++++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4788999998776654322 23456799999999999999999987531
Q ss_pred ----------CCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHH
Q 007591 391 ----------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 391 ----------~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL 460 (597)
.||...+.+--..-.+|.+...-...+..|..+ +|||||++.+.. .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~---------------~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER---------------RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH---------------HHHHHHH
Confidence 122222111111123343332223556666665 999999987642 3445555
Q ss_pred HhhcCCC-----------CCCcEEEEeecCCCC---------------------CCChhhhCCCCcceEEEecCCCHHH-
Q 007591 461 TEMDGFD-----------SNSAVIVLGATNRSD---------------------VLDPALRRPGRFDRVVMVETPDKIG- 507 (597)
Q Consensus 461 ~emd~~~-----------~~~~VIVIaaTNrpd---------------------~Ld~aLlRpgRFd~~I~v~~Pd~~e- 507 (597)
+.|+.-. -..++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 5553211 135789999999752 36778888 999999999885321
Q ss_pred ---------HHHHHHHHH-------hcCCCCCCCCCCHH----------------HHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 508 ---------REAILKVHV-------SKKELPLAKDIDLG----------------DIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 508 ---------R~~ILk~~l-------~~~~l~l~~dvdl~----------------~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
..+|-+... .+.+ .+...+.-. .-+....|+|.|....+++-|...|
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiA 472 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQN-KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIA 472 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHH-HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 111211100 0000 001111111 1122344789999999999999999
Q ss_pred HhcCCccccHHHHHHHHHH
Q 007591 556 GRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~r 574 (597)
..+++..|+.+|+.+|+.=
T Consensus 473 DL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 473 DIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHcCCCCCCHHHHHHHHHh
Confidence 9999999999999999863
No 188
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.18 E-value=4.6e-10 Score=126.08 Aligned_cols=207 Identities=22% Similarity=0.329 Sum_probs=133.9
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHh----hh-------------------CCCCCCeeEEecCCCChHHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYI----RL-------------------GARPPRGVLLVGLPGTGKTL 380 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~----~l-------------------g~~~p~gVLL~GPPGTGKT~ 380 (597)
....+-.|.|+.|.+.+-..+...+.. -+|..|. ++ +.++.+-+||+||||-|||+
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~-WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQ-WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHh-hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 344556788888888765554443321 1222222 11 22334668899999999999
Q ss_pred HHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHh--------cCCeEEEEcCcchhhhhcCCccccccchHH
Q 007591 381 LAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKK--------EAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (597)
Q Consensus 381 LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~--------~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (597)
||+.+|+++|..++.|++++-.. +..++..+..|-. ..|..|+|||||--.
T Consensus 342 LAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------- 400 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------- 400 (877)
T ss_pred HHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------
Confidence 99999999999999999987432 3334444443322 568899999998532
Q ss_pred HHHHHHHHHhhc-------CCCC------------CCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 007591 453 EQTLNQLLTEMD-------GFDS------------NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 453 e~~Ln~LL~emd-------~~~~------------~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk 513 (597)
...++.++..+. |-.. .-.--|||.||.. --|+|+.---|..++.|.+|...-..+-|+
T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHH
Confidence 223344444333 1111 0124567777743 346663222488899999999988889999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007591 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 514 ~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
..+.+.++..+.. .+..|++.|.+ ||++.+|.-..+|....
T Consensus 479 ~IC~rE~mr~d~~-aL~~L~el~~~----DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 479 EICHRENMRADSK-ALNALCELTQN----DIRSCINTLQFLASNVD 519 (877)
T ss_pred HHHhhhcCCCCHH-HHHHHHHHhcc----hHHHHHHHHHHHHHhcc
Confidence 9998887765443 36666666654 99999999888876543
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.17 E-value=2.6e-10 Score=129.64 Aligned_cols=189 Identities=20% Similarity=0.246 Sum_probs=127.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecchhHHHhhccchHHHHH------------HHHHHHhcCCeEEEEc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRD------------LFARAKKEAPSIIFID 431 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se~~~~~vG~~~~~vr~------------lF~~A~~~~P~ILfID 431 (597)
.+|||.|+||||||++|++++..+. .||+.+......+...|.. .+.. ++.+| ...+||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A---~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEA---PRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeC---CCCcEecc
Confidence 4799999999999999999999774 4788887543333333321 1111 11111 22499999
Q ss_pred CcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----------CCCcEEEEeecCCCC---CCChhhhCCCCcceE
Q 007591 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD---VLDPALRRPGRFDRV 497 (597)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----------~~~~VIVIaaTNrpd---~Ld~aLlRpgRFd~~ 497 (597)
||+.+... +.+.|+..|+.-. ....+.||+++|..+ .|.++|+. ||+.+
T Consensus 92 Ei~rl~~~---------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 92 MANLLDDG---------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred chhhCCHH---------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 99998643 3456666665321 124688999888765 78999999 99988
Q ss_pred EEecC-CCHHHHHHHHHHHHhcC-----------------------CCCCCCCCCHHHHHHhC--CCCC-HHHHHHHHHH
Q 007591 498 VMVET-PDKIGREAILKVHVSKK-----------------------ELPLAKDIDLGDIASMT--TGFT-GADLANLVNE 550 (597)
Q Consensus 498 I~v~~-Pd~~eR~~ILk~~l~~~-----------------------~l~l~~dvdl~~LA~~t--~G~S-gaDL~~Lv~e 550 (597)
+.+.. |+.++|.+|++.++... .+.+.+++ ++.|+..+ .|.+ .+....+++-
T Consensus 155 v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~-~~~l~~~~~~~gv~s~Ra~i~~~r~ 233 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQ-VKELVLTAASLGISGHRADLFAVRA 233 (589)
T ss_pred eecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHH-HHHHHHHHHHcCCCCccHHHHHHHH
Confidence 87764 57788999988765211 12222221 33333322 2333 4566678888
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHhc
Q 007591 551 AALLAGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~rvi~ 577 (597)
|...|..+++..|+.+|+..|+.-++.
T Consensus 234 ArA~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 234 AKAHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 888999999999999999999988874
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=3.9e-10 Score=128.47 Aligned_cols=206 Identities=14% Similarity=0.170 Sum_probs=121.4
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEE-eecc---
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSAS--- 399 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~-is~s--- 399 (597)
+...+.+++||+|+++..++|+.++..... +..+.+.++|+||||||||++++++|++++..++. .+..
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 344678899999999999988887765322 22344569999999999999999999998765433 1110
Q ss_pred hhH----------HHh--hccchHHHHHHHHHHHh----------cCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 400 EFV----------ELY--VGMGASRVRDLFARAKK----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 400 e~~----------~~~--vG~~~~~vr~lF~~A~~----------~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
... ..+ .......+..++..+.. ....||+||||+.+... + .+.+.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----------~~~lq 216 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----------TRALH 216 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----------HHHHH
Confidence 000 000 01123344555555542 24569999999987532 1 12334
Q ss_pred HHHH-hhcCCCCCCcEEEEeecCCC-------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCC
Q 007591 458 QLLT-EMDGFDSNSAVIVLGATNRS-------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL 523 (597)
Q Consensus 458 ~LL~-emd~~~~~~~VIVIaaTNrp-------------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l 523 (597)
.+|. .... .....+|+|.+.+.. ..|.++++...|.. +|.|.+.+.....+.|+..+...+...
T Consensus 217 ~lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~ 294 (637)
T TIGR00602 217 EILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKN 294 (637)
T ss_pred HHHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhcc
Confidence 4444 2111 122233333332211 11446777433543 799999999998888888887643322
Q ss_pred CCC------CCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 524 AKD------IDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 524 ~~d------vdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
..+ ..+..|+....| |++.+++.--..
T Consensus 295 ~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~ 327 (637)
T TIGR00602 295 GEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFS 327 (637)
T ss_pred ccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHH
Confidence 221 235666665544 777777655444
No 191
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-10 Score=126.44 Aligned_cols=200 Identities=27% Similarity=0.380 Sum_probs=131.1
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~ 403 (597)
+...+.+|+|...+..++.+.++.+... ...|||.|.+||||..+||+|.... +.||+.+||..+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 3677889999999999999998876443 3469999999999999999998865 68999999987755
Q ss_pred Hhh-----ccchH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh--hcCCCC-
Q 007591 404 LYV-----GMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE--MDGFDS- 468 (597)
Q Consensus 404 ~~v-----G~~~~-------~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e--md~~~~- 468 (597)
... |.-.. .-+.-|+.|..+ .||+|||..|.-.-|. -+-..|++ ++...+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelPL~lQa------------KLLRvLQegEieRvG~~ 352 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELPLALQA------------KLLRVLQEGEIERVGGD 352 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCCHHHHH------------HHHHHHhhcceeecCCC
Confidence 421 11100 012234444333 8999999887654432 22223332 333332
Q ss_pred ---CCcEEEEeecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HHHHHHhc----CC---CCCCCCC
Q 007591 469 ---NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDI 527 (597)
Q Consensus 469 ---~~~VIVIaaTNrpd~Ld~aLlRpgRFd-------~~I~v~~Pd~~eR~~----ILk~~l~~----~~---l~l~~dv 527 (597)
+-.|-||||||+. |..++ +.|+|- .++.+..|...||.+ +.++++++ .+ +.++++
T Consensus 353 r~ikVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~- 428 (550)
T COG3604 353 RTIKVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE- 428 (550)
T ss_pred ceeEEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH-
Confidence 2369999999974 22222 334552 266777888888864 22333332 22 233333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 528 DLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.++.|..+..--+.++|+|++++|++.|
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 2666666665558899999999999988
No 192
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.14 E-value=4.7e-10 Score=122.54 Aligned_cols=155 Identities=26% Similarity=0.417 Sum_probs=90.1
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-------CeEEeec----c
Q 007591 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA----S 399 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------pfi~is~----s 399 (597)
++++.+.++..+.+...+. ..++++|+||||||||++|+++|..+.. .++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 6677777766555544332 2457999999999999999999987742 1233322 2
Q ss_pred hhHHHh--hccchH----HHHHHHHHHHh--cCCeEEEEcCcchhhhhc--CCccccccchHHHHHHHH--HHHh--hcC
Q 007591 400 EFVELY--VGMGAS----RVRDLFARAKK--EAPSIIFIDEIDAVAKSR--DGRFRIVSNDEREQTLNQ--LLTE--MDG 465 (597)
Q Consensus 400 e~~~~~--vG~~~~----~vr~lF~~A~~--~~P~ILfIDEIDaL~~~r--~~~~~~~~~~e~e~~Ln~--LL~e--md~ 465 (597)
+++..+ .+.+.. .+.++...|.. ..|+|||||||+.....+ +.-......+.+.+.... ...+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 333222 111111 23445566654 358999999999755332 110000111110000000 0001 123
Q ss_pred CCCCCcEEEEeecCCCC----CCChhhhCCCCcceEEEecC
Q 007591 466 FDSNSAVIVLGATNRSD----VLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 466 ~~~~~~VIVIaaTNrpd----~Ld~aLlRpgRFd~~I~v~~ 502 (597)
+....++.||||+|..| .+|.||+| ||. .|++.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55568999999999987 89999999 996 566654
No 193
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-10 Score=126.82 Aligned_cols=213 Identities=23% Similarity=0.293 Sum_probs=130.0
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC-----------------
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----------------- 390 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg----------------- 390 (597)
...|.||.|++.+|..|..... ..+++||+||||||||+||+.+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 4689999999999999988764 345799999999999999999877430
Q ss_pred ------------CCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHH
Q 007591 391 ------------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 391 ------------~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~ 458 (597)
.||..-..+.-....+|.+..---.-...|.. .||||||+-.+- +++|+.
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~---GVLFLDElpef~---------------~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHN---GVLFLDELPEFK---------------RSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecC---CEEEeeccchhh---------------HHHHHH
Confidence 12221111111111122221000011112222 399999985442 477888
Q ss_pred HHHhhcCCC-----------CCCcEEEEeecCCC-----------------------CCCChhhhCCCCcceEEEecCCC
Q 007591 459 LLTEMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPD 504 (597)
Q Consensus 459 LL~emd~~~-----------~~~~VIVIaaTNrp-----------------------d~Ld~aLlRpgRFd~~I~v~~Pd 504 (597)
|.+-|+.-. -..++.+|+|+|.. ..|...|++ |||..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 887776421 13468889999863 133455566 999999998876
Q ss_pred HHHHH--------------HHHHHHHh----cCCCCCCCCC----------------CHHHHHHhCCCCCHHHHHHHHHH
Q 007591 505 KIGRE--------------AILKVHVS----KKELPLAKDI----------------DLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 505 ~~eR~--------------~ILk~~l~----~~~l~l~~dv----------------dl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
..++. .+++.+-. ...+.....+ ++-.-+-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 43321 12221110 0111001111 12222334446788888899999
Q ss_pred HHHHHHhcCCccccHHHHHHHHHH
Q 007591 551 AALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~r 574 (597)
|..+|-..+...|...|+.+|+.-
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHhh
Confidence 999998889999999999999863
No 194
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.12 E-value=9.6e-11 Score=107.99 Aligned_cols=110 Identities=32% Similarity=0.435 Sum_probs=68.2
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH--hhccchHH------HHHHHHHHHhcCCeEEEEcCcchhhh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASR------VRDLFARAKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~--~vG~~~~~------vr~lF~~A~~~~P~ILfIDEIDaL~~ 438 (597)
+|||+||||||||++|+.+|..++.+++.++++...+. ..|.-.-. ....+..+.. .++|++||||+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCCH
Confidence 48999999999999999999999999999888754221 11111000 0000000111 467999999987542
Q ss_pred hcCCccccccchHHHHHHHHHHHhhcCCC-----------CCC------cEEEEeecCCCC----CCChhhhCCCCc
Q 007591 439 SRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNS------AVIVLGATNRSD----VLDPALRRPGRF 494 (597)
Q Consensus 439 ~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----------~~~------~VIVIaaTNrpd----~Ld~aLlRpgRF 494 (597)
.++..|+..++.-. ... ++.+|+|+|..+ .++++|++ ||
T Consensus 80 ---------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 80 ---------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 23344444443210 011 489999999998 99999999 86
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=1.4e-09 Score=115.54 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=106.0
Q ss_pred CcccccC-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC----------------
Q 007591 330 TFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------------- 392 (597)
Q Consensus 330 tf~dV~G-~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p---------------- 392 (597)
.|++|+| ++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+.++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 88899988888752 3566778999999999999999999876321
Q ss_pred --------eEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHH
Q 007591 393 --------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 393 --------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL 460 (597)
+..+... . ...+...++++.+.+.. ....|++|||+|.+.. ...|.||
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLL 131 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------SAANSLL 131 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------HHHHHHH
Confidence 1111110 0 01123456776665542 2345999999998863 3458899
Q ss_pred HhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH
Q 007591 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 461 ~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~ 514 (597)
..|+.. ...+++|.+|+.+..|.+.+++ |. ..+++.+|+.++..++++.
T Consensus 132 K~LEEP--p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEP--SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCC--CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 999853 3455666677778899999988 43 2899999999888777753
No 196
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.2e-09 Score=113.10 Aligned_cols=127 Identities=33% Similarity=0.496 Sum_probs=87.3
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCC-------C-CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH-
Q 007591 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGA-------R-PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL- 404 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~-------~-~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~- 404 (597)
|+|++.+|+.|.-++.. + |.++.. . ...++||.||+|+|||+||+.+|+.+++||...++..+-+.
T Consensus 63 VIGQe~AKKvLsVAVYN--H---YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVYN--H---YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeehh--H---HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 89999999988766532 1 222211 1 13479999999999999999999999999999999888664
Q ss_pred hhccchHHH-HHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC
Q 007591 405 YVGMGASRV-RDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 405 ~vG~~~~~v-r~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~ 466 (597)
|+|+....+ ..++..|. +....||||||||.+.++..+... .-+-.-+.+...||..|+|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SI-TRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSI-TRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCc-ccccCchHHHHHHHHHHcCc
Confidence 888765543 44444332 223459999999999987654311 11111245556778888763
No 197
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.7e-09 Score=114.86 Aligned_cols=149 Identities=18% Similarity=0.287 Sum_probs=103.5
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------------------eEEeecchhHHHhhccchHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 417 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------------------fi~is~se~~~~~vG~~~~~vr~lF 417 (597)
.+.|..+||+||+|+|||++|+++|+.+.+. ++.+...+- -..-+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 4567889999999999999999999976431 122211000 0012345677777
Q ss_pred HHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCC
Q 007591 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (597)
Q Consensus 418 ~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgR 493 (597)
+.+.. ....|++|||+|.+.. ...|.||+.|+. +..++++|.+|+.++.|.|.+++ |
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--R 156 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--R 156 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--h
Confidence 66653 3456999999999863 445899999985 33567888899999999999998 5
Q ss_pred cceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007591 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 494 Fd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (597)
.. .+.|++|+.++..+.+...... . .+.+...++....|
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~~~~~----~-~~~~~~~~l~la~G 195 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQALPE----S-DERERIELLTLAGG 195 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHHhccc----C-ChHHHHHHHHHcCC
Confidence 44 6899999999888888765411 1 12224455666666
No 198
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.05 E-value=5.7e-10 Score=122.22 Aligned_cols=205 Identities=19% Similarity=0.245 Sum_probs=125.1
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV 406 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v 406 (597)
.+.+++|.....+.+.+.+..+. .....++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45578888877777766655432 223469999999999999999998765 57999999987643211
Q ss_pred -----ccc-------hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-----C--
Q 007591 407 -----GMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D-- 467 (597)
Q Consensus 407 -----G~~-------~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-----~-- 467 (597)
|.. .......|..| ...+|||||||.|....+ ..|+..++.- .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q---------------~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ---------------AKLLRFLQERVIERLGGR 268 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH---------------HHHHHHHhhCeEEeCCCC
Confidence 100 00011122223 245999999999875432 3344433321 1
Q ss_pred --CCCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCC
Q 007591 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDI 527 (597)
Q Consensus 468 --~~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~----~~l---~l~~dv 527 (597)
....+.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++++ .+. .+.++
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 344 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD- 344 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH-
Confidence 12357888888765 233444433 443 46777788888865 34444332 221 23333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 007591 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
.+..|..+.+..+.++|++++.+|+..+ ....|+.+++.
T Consensus 345 a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 345 ALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 3666777776668899999999998765 23456666653
No 199
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=8.3e-09 Score=111.64 Aligned_cols=228 Identities=18% Similarity=0.203 Sum_probs=148.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecchhHHH---
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVEL--- 404 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se~~~~--- 404 (597)
.+.|.++....+++++..- +....+..+++.|-||||||.+..-+...+ ....++++|..+...
T Consensus 151 ~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 4778888777777776542 224567789999999999999999776543 234478888753221
Q ss_pred -------h----hccch-HHHHHHHHHH-Hhc-CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCC
Q 007591 405 -------Y----VGMGA-SRVRDLFARA-KKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (597)
Q Consensus 405 -------~----vG~~~-~~vr~lF~~A-~~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~ 470 (597)
+ ++.+. ......|..- ... .+-|+++||+|.|+...+. ++..+.. +.. -++.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lFe-wp~-lp~s 288 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLFE-WPK-LPNS 288 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeehh-ccc-CCcc
Confidence 1 11111 1222333332 222 3669999999999955432 2222222 222 2356
Q ss_pred cEEEEeecCCCCCCChhhhC----CCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH--HHH
Q 007591 471 AVIVLGATNRSDVLDPALRR----PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--ADL 544 (597)
Q Consensus 471 ~VIVIaaTNrpd~Ld~aLlR----pgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg--aDL 544 (597)
.+++|+.+|..|.-|..|-| .+--...+.|++++.++..+||+..+.........+..++.+|+...|.|| +.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 78999999988766655532 222346899999999999999999997753333333457778999998887 556
Q ss_pred HHHHHHHHHHHHhcCC----------------ccccHHHHHHHHHHHhcchhhh
Q 007591 545 ANLVNEAALLAGRLNK----------------VVVEKIDFIHAVERSIAGIEKK 582 (597)
Q Consensus 545 ~~Lv~eAal~A~r~~~----------------~~It~~d~~~Al~rvi~g~~k~ 582 (597)
-.+|+.|..+|....+ ..|..+++..++.++.......
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~ 422 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSAR 422 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhh
Confidence 6788888888766532 3466788888888876554443
No 200
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.9e-09 Score=111.10 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=62.4
Q ss_pred eEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------CCCcEEEEeec----CCCCCCChhhhCCCC
Q 007591 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT----NRSDVLDPALRRPGR 493 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------~~~~VIVIaaT----Nrpd~Ld~aLlRpgR 493 (597)
.||||||||.++.+.+.+ +..-.++.+...||-.++|-. ....+++||+. ..|..|-|.|. ||
T Consensus 252 GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred CeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 499999999999765422 123345666677887777642 23578899887 55788888885 59
Q ss_pred cceEEEecCCCHHHHHHHHH
Q 007591 494 FDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 494 Fd~~I~v~~Pd~~eR~~ILk 513 (597)
|.-.+++...+.++...||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999999888764
No 201
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.00 E-value=7.1e-09 Score=110.60 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=60.0
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhHHhhhCC-CCCCeeEEecCCCChHHHHHHHHHHhcCC-------CeEEeec---
Q 007591 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA--- 398 (597)
Q Consensus 331 f~-dV~G~de~k~~L~eiv~~l~~p~~~~~lg~-~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------pfi~is~--- 398 (597)
|+ |++|+++++++|-+.+ +... .|. ...+.++|+||||+|||+||++|++.++. |++.+.+
T Consensus 49 F~~~~~G~~~~i~~lv~~l---~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYF---KSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHHHH---HHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 55 8999999866655544 3322 122 34567899999999999999999999976 9999988
Q ss_pred -chhHHHhhccchHHHHHHHHHH
Q 007591 399 -SEFVELYVGMGASRVRDLFARA 420 (597)
Q Consensus 399 -se~~~~~vG~~~~~vr~lF~~A 420 (597)
+.+.+..++.....+|+.|.+.
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHH
Confidence 6666666665555555555443
No 202
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.00 E-value=6.9e-09 Score=111.51 Aligned_cols=217 Identities=26% Similarity=0.375 Sum_probs=133.9
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-------CCCeEEe----
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC---- 396 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~i---- 396 (597)
...|.-++|++..|..|--.. -+|+ -.|+||.|+.|||||+++|+||.-+ |+||-+-
T Consensus 13 ~~pf~aivGqd~lk~aL~l~a---v~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNA---VDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhh---cccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 466888999999887765331 2222 2479999999999999999999976 3333210
Q ss_pred --ecc-------------------hhHHHhhccchHHH------HHH------------HHHHHhcCCeEEEEcCcchhh
Q 007591 397 --SAS-------------------EFVELYVGMGASRV------RDL------------FARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 397 --s~s-------------------e~~~~~vG~~~~~v------r~l------------F~~A~~~~P~ILfIDEIDaL~ 437 (597)
.|. .++....|.++.++ ... +.+|. ..||+|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL~ 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLLD 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEecccccc
Confidence 011 12223334444432 111 11222 2399999998775
Q ss_pred hhcCCccccccchHHHHHHHHHHHhhcC-----------CCCCCcEEEEeecCCC-CCCChhhhCCCCcceEEEecCC-C
Q 007591 438 KSRDGRFRIVSNDEREQTLNQLLTEMDG-----------FDSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP-D 504 (597)
Q Consensus 438 ~~r~~~~~~~~~~e~e~~Ln~LL~emd~-----------~~~~~~VIVIaaTNrp-d~Ld~aLlRpgRFd~~I~v~~P-d 504 (597)
+.+++.||..+.. +....++++|+|+|.- ..|-|.|+. ||...+.+..| +
T Consensus 158 ---------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~ 220 (423)
T COG1239 158 ---------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLD 220 (423)
T ss_pred ---------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCC
Confidence 3455666665542 2335689999999986 588899998 99999999877 6
Q ss_pred HHHHHHHHHHHHhcCCCC-----------------------CCCCC-----CHHHHHHhCC--CCC-HHHHHHHHHHHHH
Q 007591 505 KIGREAILKVHVSKKELP-----------------------LAKDI-----DLGDIASMTT--GFT-GADLANLVNEAAL 553 (597)
Q Consensus 505 ~~eR~~ILk~~l~~~~l~-----------------------l~~dv-----dl~~LA~~t~--G~S-gaDL~~Lv~eAal 553 (597)
.++|.+|++..+.-...| +-+.+ ....++..+. +.. .+.-.-+++.|..
T Consensus 221 ~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a 300 (423)
T COG1239 221 LEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKA 300 (423)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 788998888766421100 00000 0111222111 111 1222234455566
Q ss_pred HHHhcCCccccHHHHHHHHHHHh
Q 007591 554 LAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~rvi 576 (597)
+|...++..++.+|+++|..-.+
T Consensus 301 ~aa~~Gr~~v~~~Di~~a~~l~l 323 (423)
T COG1239 301 LAALRGRTEVEEEDIREAAELAL 323 (423)
T ss_pred HHHhcCceeeehhhHHHHHhhhh
Confidence 67778999999999999987664
No 203
>PRK08116 hypothetical protein; Validated
Probab=98.96 E-value=4.1e-09 Score=108.92 Aligned_cols=163 Identities=19% Similarity=0.261 Sum_probs=89.6
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~ 404 (597)
..+|++..-.+.....+..+..++.+ |.... ..+.+++|+|+||||||+||.++|+++ +.+++.++.+++...
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 45666655334433333333333322 22111 234679999999999999999999975 789999999888765
Q ss_pred hhcc----chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 405 YVGM----GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 405 ~vG~----~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
+... ......++++... . ..+|+|||++... ..+. ....|+..++....+ +..+|.|||.
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~-~-~dlLviDDlg~e~----------~t~~---~~~~l~~iin~r~~~-~~~~IiTsN~ 220 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLV-N-ADLLILDDLGAER----------DTEW---AREKVYNIIDSRYRK-GLPTIVTTNL 220 (268)
T ss_pred HHHHHhccccccHHHHHHHhc-C-CCEEEEecccCCC----------CCHH---HHHHHHHHHHHHHHC-CCCEEEECCC
Confidence 4321 1112223333332 2 3499999996421 1111 223333444432222 2245557776
Q ss_pred C-CC----CChhhhCCCCc---ceEEEecCCCHHHHHHHHHH
Q 007591 481 S-DV----LDPALRRPGRF---DRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 481 p-d~----Ld~aLlRpgRF---d~~I~v~~Pd~~eR~~ILk~ 514 (597)
+ +. ++.++.+ |+ ...|.+..||. |..+.+.
T Consensus 221 ~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~~~e 258 (268)
T PRK08116 221 SLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEIAKE 258 (268)
T ss_pred CHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHHHHH
Confidence 5 33 4666665 54 34566666664 4444433
No 204
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.96 E-value=1e-09 Score=106.09 Aligned_cols=113 Identities=32% Similarity=0.374 Sum_probs=75.6
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCC----CeEEeecchhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcCcch
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDA 435 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~----pfi~is~se~~~~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEIDa 435 (597)
|-..+||+||+|||||.+|+++|..+.. +++.++++++... +.....+..++..+. .....||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3346899999999999999999999996 9999999998761 111222222222111 11112999999999
Q ss_pred hhhhcCCccccccchHHHHHHHHHHHhhcCCC---------CCCcEEEEeecCCCC
Q 007591 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATNRSD 482 (597)
Q Consensus 436 L~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------~~~~VIVIaaTNrpd 482 (597)
+.+..+ .+.+-..+.+.+.||+.|++-. .-.++++|+|+|--.
T Consensus 80 a~~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 987521 2334445677788888876421 124799999998753
No 205
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.95 E-value=6.5e-09 Score=114.74 Aligned_cols=208 Identities=21% Similarity=0.266 Sum_probs=129.2
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh-
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~- 405 (597)
.+.+++|.......+.+.+..+. .....+|+.|++|||||++|++++... +.||+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 35678998887777766665432 234469999999999999999998875 5799999998763321
Q ss_pred ----hccchH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----C-
Q 007591 406 ----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S- 468 (597)
Q Consensus 406 ----vG~~~~-------~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----~- 468 (597)
.|.... .....|+.+ ....|||||||.|....+ ..|+..++.-. .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ---------------TRLLRVLADGQFYRVGGY 267 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 111000 001112222 234899999999875432 34444443211 1
Q ss_pred ---CCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCC---CCCCC
Q 007591 469 ---NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP---LAKDI 527 (597)
Q Consensus 469 ---~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~----ILk~~l~~----~~l~---l~~dv 527 (597)
...+.+|++|+.. ..+.+.|.. ||. .+.+..|...+|.+ ++.+++++ .+.+ +.++
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 343 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE- 343 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 2356888888764 234455554 553 46677777666654 45555432 2221 3333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.+..|..+.+..+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 344 a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 344 TEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 3667777777668899999999988765 34568888876444
No 206
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.94 E-value=1.7e-09 Score=104.30 Aligned_cols=120 Identities=28% Similarity=0.441 Sum_probs=76.5
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH-----h
Q 007591 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~-----~ 405 (597)
|+|.+...+.+.+.+..+. ..+..|||+|++||||+++|++|.... +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5677777777776665532 234579999999999999999999865 579999999876432 2
Q ss_pred hccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC--C---CC----C
Q 007591 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F---DS----N 469 (597)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~--~---~~----~ 469 (597)
.|... .....+|+.|... +||||||+.|....+ ..|+..|+. + .. .
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ---------------AKLLRVLEEGKFTRLGSDKPVP 132 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH---------------HHHHHHHHHSEEECCTSSSEEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHHHH---------------HHHHHHHhhchhcccccccccc
Confidence 23211 1123677877776 999999999975443 334444431 1 11 2
Q ss_pred CcEEEEeecCCC
Q 007591 470 SAVIVLGATNRS 481 (597)
Q Consensus 470 ~~VIVIaaTNrp 481 (597)
..+.||++|+.+
T Consensus 133 ~~~RiI~st~~~ 144 (168)
T PF00158_consen 133 VDVRIIASTSKD 144 (168)
T ss_dssp --EEEEEEESS-
T ss_pred ccceEEeecCcC
Confidence 378999999864
No 207
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.94 E-value=7.9e-09 Score=113.43 Aligned_cols=208 Identities=19% Similarity=0.278 Sum_probs=124.8
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh-
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~- 405 (597)
.+.+++|.......+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 345678877766665555443322 23469999999999999999998754 5799999998764321
Q ss_pred ----hccchH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-----CC-
Q 007591 406 ----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS- 468 (597)
Q Consensus 406 ----vG~~~~-------~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-----~~- 468 (597)
.|.... .....|..| ...+|||||||.|....+ ..|+..++.- ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVLQ---------------AKLLRILQEREFERIGGH 272 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 111000 001122222 234999999999875432 3344444321 11
Q ss_pred ---CCcEEEEeecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhcC----CC---CCCCCC
Q 007591 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSKK----EL---PLAKDI 527 (597)
Q Consensus 469 ---~~~VIVIaaTNrpd~Ld~aLlRpgRFd~-------~I~v~~Pd~~eR~~----ILk~~l~~~----~l---~l~~dv 527 (597)
..++.||++|+..- ..+.+.|+|.. .+.+..|+..+|.+ ++..++.+. +. .+.++
T Consensus 273 ~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~- 348 (457)
T PRK11361 273 QTIKVDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM- 348 (457)
T ss_pred ceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 23578888988641 12223333322 56778888888764 333333321 21 23333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 528 dl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.++.|..+....+.++|++++.+|+..+ ....|+.+|+...+
T Consensus 349 a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 349 AMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 2566677776668899999999988754 34568888876544
No 208
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.92 E-value=3.4e-08 Score=111.17 Aligned_cols=236 Identities=17% Similarity=0.229 Sum_probs=146.3
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEeecchhHH
Q 007591 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE 403 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is~se~~~ 403 (597)
+.+.+....++...++..-.++ .....++++|-||||||.+++.|-.++ ..+|+.+++-.+.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 4555555555555554422210 122368899999999999999998855 36788888876644
Q ss_pred H---hh-------ccc------hHHHHHHHHHH-HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC
Q 007591 404 L---YV-------GMG------ASRVRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (597)
Q Consensus 404 ~---~v-------G~~------~~~vr~lF~~A-~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~ 466 (597)
. |. |.. -..+..-|... ....+|||+|||+|.|....+ .++..|+..-.
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt-- 536 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT-- 536 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc--
Confidence 2 21 111 11122222211 124578999999999986543 34455554432
Q ss_pred CCCCcEEEEeecCCCCCCChhhhC--CCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH--
Q 007591 467 DSNSAVIVLGATNRSDVLDPALRR--PGRFD-RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG-- 541 (597)
Q Consensus 467 ~~~~~VIVIaaTNrpd~Ld~aLlR--pgRFd-~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg-- 541 (597)
.++.+++||+..|..+....-|.. ..|++ ..+.|.+++..+.++|+...+... ..+..+ ..+.+|+.-...||
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~-aielvarkVAavSGDa 614 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENK-AIELVARKVAAVSGDA 614 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchh-HHHHHHHHHHhccccH
Confidence 345678888888875433322210 12443 578999999999999999998653 122222 24445555544444
Q ss_pred HHHHHHHHHHHHHHHhcCC-------ccccHHHHHHHHHHHhcchhh-hccCCCHHHHh
Q 007591 542 ADLANLVNEAALLAGRLNK-------VVVEKIDFIHAVERSIAGIEK-KTAKLKGSEKA 592 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~-------~~It~~d~~~Al~rvi~g~~k-~~~~ls~~ek~ 592 (597)
+...++|++|+..|..+.. ..|++.|+.+|+...+....- ....++-.+|.
T Consensus 615 Rraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~ 673 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKI 673 (767)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHH
Confidence 6677899999999987765 678999999999988765432 23344444443
No 209
>PRK15115 response regulator GlrR; Provisional
Probab=98.91 E-value=4.4e-09 Score=115.20 Aligned_cols=182 Identities=24% Similarity=0.369 Sum_probs=112.1
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh-----ccch-------HHHHHHHHHHHhcCCeEEEE
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV-----GMGA-------SRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v-----G~~~-------~~vr~lF~~A~~~~P~ILfI 430 (597)
..++|+|++|||||++|+++.... +.||+.++|..+.+... |... .....+|+.+ ...+|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 359999999999999999998864 58999999987633221 1000 0001122222 2359999
Q ss_pred cCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-----CC----CCcEEEEeecCCCCCCChhhhCCCCcc------
Q 007591 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS----NSAVIVLGATNRSDVLDPALRRPGRFD------ 495 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-----~~----~~~VIVIaaTNrpd~Ld~aLlRpgRFd------ 495 (597)
||||.|....+ ..|+..++.- .. ...+.+|++|+.. +...+. .|+|.
T Consensus 235 ~~i~~l~~~~q---------------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~~~ 296 (444)
T PRK15115 235 DEIGDMPAPLQ---------------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLYYR 296 (444)
T ss_pred EccccCCHHHH---------------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHHHh
Confidence 99999875433 3344444321 11 1367888888863 333322 23441
Q ss_pred -eEEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 007591 496 -RVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 496 -~~I~v~~Pd~~eR~~----ILk~~l~~----~~l---~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
..+.+..|...+|.+ +++.++.+ .+. .+.++ .+..|..+.+..+.++|.++++.|+..+ ....|
T Consensus 297 l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i 372 (444)
T PRK15115 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVI 372 (444)
T ss_pred hceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcc
Confidence 156777888888853 34444432 121 23444 3777788886668899999999988754 34567
Q ss_pred cHHHHHHHH
Q 007591 564 EKIDFIHAV 572 (597)
Q Consensus 564 t~~d~~~Al 572 (597)
+.+++...+
T Consensus 373 ~~~~l~~~~ 381 (444)
T PRK15115 373 SDALVEQAL 381 (444)
T ss_pred Chhhhhhhh
Confidence 777776444
No 210
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.89 E-value=2e-08 Score=117.22 Aligned_cols=161 Identities=19% Similarity=0.171 Sum_probs=91.9
Q ss_pred cccCChHHHHHHHHHHHH-hcChhH--------HhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-------CCCeEEe
Q 007591 333 DVAGVDEAKEELEEIVEF-LRSPDK--------YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC 396 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~--------~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~i 396 (597)
.|.|++++|+.|--.+-. ...... |.....+...+|||+|+||||||.+|++++... |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 578888888776433311 110000 000123445589999999999999999999854 3455555
Q ss_pred ecchhHHHhh-ccchHHH-HHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC--------
Q 007591 397 SASEFVELYV-GMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-------- 466 (597)
Q Consensus 397 s~se~~~~~v-G~~~~~v-r~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-------- 466 (597)
.+..+..... ..++..+ ...+..|. ..+++|||+|.+.... ...|+..|+.-
T Consensus 531 gLTa~~~~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkms~~~---------------Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMIQPGAVVLAN---GGVCCIDELDKCHNES---------------RLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred cccchhhhcccccCcccccCCcEEEcC---CCeEEecchhhCCHHH---------------HHHHHHHHhCCEEEEecCC
Confidence 5544321000 0011000 01122222 3499999999986332 23444455422
Q ss_pred ---CCCCcEEEEeecCCC-------------CCCChhhhCCCCcceEEE-ecCCCHHHHHHHHH
Q 007591 467 ---DSNSAVIVLGATNRS-------------DVLDPALRRPGRFDRVVM-VETPDKIGREAILK 513 (597)
Q Consensus 467 ---~~~~~VIVIaaTNrp-------------d~Ld~aLlRpgRFd~~I~-v~~Pd~~eR~~ILk 513 (597)
.-+..+.||||+|.. -.|+++|++ |||..+. ++.|+.+.=..|..
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHH
Confidence 124578999999974 256799999 9997754 46677655444433
No 211
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.89 E-value=9.2e-09 Score=98.48 Aligned_cols=134 Identities=24% Similarity=0.342 Sum_probs=87.3
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-----------------------C
Q 007591 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------------------P 392 (597)
Q Consensus 336 G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-----------------------p 392 (597)
|++++.+.|.+++.. .+.|..+||+||+|+||+++|+++|..+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 778888888888763 355677999999999999999999997521 1
Q ss_pred eEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC
Q 007591 393 FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (597)
Q Consensus 393 fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~ 468 (597)
++.+...+.. ..-....++++...+.. ....|++|||+|.|.. ...|.||..|+..+
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEepp- 130 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEEPP- 130 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHSTT-
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcCCC-
Confidence 2222221100 01234567776666543 3456999999999864 34589999999544
Q ss_pred CCcEEEEeecCCCCCCChhhhCCCCcceEEEecCC
Q 007591 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 469 ~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~P 503 (597)
.++++|.+|+.++.|-+.+++ |.. .+.+++.
T Consensus 131 -~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 131 -ENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp -TTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred -CCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 567888888889999999998 532 5666543
No 212
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=4.4e-08 Score=103.89 Aligned_cols=135 Identities=18% Similarity=0.303 Sum_probs=94.8
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC-------CeEEe---------ecchhHHHh--h--ccchHHHHHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC---------SASEFVELY--V--GMGASRVRDLFARAK 421 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------pfi~i---------s~se~~~~~--v--G~~~~~vr~lF~~A~ 421 (597)
.+.|.++||+||+|+||+++|+++|+.+-+ +.=.+ +.+|+.... . .-+...+|++.+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 356778999999999999999999997632 11000 001111000 0 124566777766654
Q ss_pred h----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceE
Q 007591 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (597)
Q Consensus 422 ~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~ 497 (597)
. +...|++||++|.|.. ...|.||+.|+. +..++++|.+|+.++.|.|.+++ |- ..
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QT 160 (325)
T ss_pred hccccCCceEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eE
Confidence 3 3345999999999863 345899999985 55667888888889999999988 43 27
Q ss_pred EEecCCCHHHHHHHHHHHH
Q 007591 498 VMVETPDKIGREAILKVHV 516 (597)
Q Consensus 498 I~v~~Pd~~eR~~ILk~~l 516 (597)
+.+.+|+.++..+.|....
T Consensus 161 ~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 8999999998888887653
No 213
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.88 E-value=1.5e-08 Score=115.90 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=65.4
Q ss_pred cEEEEeecCCC--CCCChhhhCCCCcc---eEEEecC--C-CHHHHHHHHHHHHhcCCCC-CCCCCCH---HHHHH---h
Q 007591 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--P-DKIGREAILKVHVSKKELP-LAKDIDL---GDIAS---M 535 (597)
Q Consensus 471 ~VIVIaaTNrp--d~Ld~aLlRpgRFd---~~I~v~~--P-d~~eR~~ILk~~l~~~~l~-l~~dvdl---~~LA~---~ 535 (597)
.+.||+++|+. ..+||+|.. ||. ..+.++. + +.+.+..+++...+..... ....++- ..|.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57888899875 567899987 775 4455542 2 3455666665444332110 1112333 23322 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 007591 536 TTG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 536 t~G------~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (597)
..| +.-++|.+++++|...|...+...|+.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 112 236899999999999999999999999999988754
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.7e-08 Score=107.67 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=95.7
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCe-------------------------EEeecchhH--------------
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------------------------ISCSASEFV-------------- 402 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf-------------------------i~is~se~~-------------- 402 (597)
.+.|.++||+||+|+||+++|+++|..+.+.- +.+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 47788999999999999999999998764321 111110000
Q ss_pred --HH------h-hccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCC
Q 007591 403 --EL------Y-VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (597)
Q Consensus 403 --~~------~-vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~ 469 (597)
.. . ..-+...+|++.+.+.. ....|++||++|.|.. ..-|.||+.++ ++.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp 160 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLE--EPP 160 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhc--CCC
Confidence 00 0 01123567777665542 2345999999999863 34589999999 456
Q ss_pred CcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 007591 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (597)
Q Consensus 470 ~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~ 515 (597)
.++++|.+|++++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 678888899999999999998 55 48999999999888888653
No 215
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.85 E-value=1.7e-08 Score=99.12 Aligned_cols=167 Identities=26% Similarity=0.325 Sum_probs=88.6
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCC---CeEEeec--chh---HHHh-------------h-----------------
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSA--SEF---VELY-------------V----------------- 406 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~---pfi~is~--se~---~~~~-------------v----------------- 406 (597)
...++|+||.|+|||+|++.+...+.- ..+++.. ... ...+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 457999999999999999999998721 1111111 100 0000 0
Q ss_pred ccchHHHHHHHHHHHhcC-CeEEEEcCcchhh-hhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE-EEeecCCC--
Q 007591 407 GMGASRVRDLFARAKKEA-PSIIFIDEIDAVA-KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI-VLGATNRS-- 481 (597)
Q Consensus 407 G~~~~~vr~lF~~A~~~~-P~ILfIDEIDaL~-~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI-VIaaTNrp-- 481 (597)
......+..+++...+.. ..||+|||+|.+. ... +....+..|...++......++. |++++...
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~ 169 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLM 169 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----------chHHHHHHHHHHHhhccccCCceEEEECCchHHH
Confidence 112344566666665543 4899999999987 221 11344555555555433344443 34444321
Q ss_pred -C--CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCC-CCCCCHHHHHHhCCCCCHHHHHH
Q 007591 482 -D--VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL-AKDIDLGDIASMTTGFTGADLAN 546 (597)
Q Consensus 482 -d--~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l-~~dvdl~~LA~~t~G~SgaDL~~ 546 (597)
+ .-...+. +|+.. +.+++.+.++..++++..+.+. ..+ .++.+++.+...+.| .|+.|..
T Consensus 170 ~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 170 EEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp HHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT--HHHHHH
T ss_pred HHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCC-CHHHHhc
Confidence 1 1122222 37776 9999999999999999988764 433 234467888888877 5666643
No 216
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.83 E-value=1.2e-08 Score=112.39 Aligned_cols=206 Identities=21% Similarity=0.282 Sum_probs=122.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh---
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY--- 405 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~--- 405 (597)
.+++|......++.+.+..+. .....+++.|.+||||+++|+++.... +.||+.++|..+.+..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 457888877666666554432 223469999999999999999998764 5799999998763321
Q ss_pred --hccchH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-----C----
Q 007591 406 --VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D---- 467 (597)
Q Consensus 406 --vG~~~~-------~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-----~---- 467 (597)
.|.... .....|.. ...+.|||||||.|....+ ..|+..++.- .
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~~~q---------------~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPLDAQ---------------TRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCHHHH---------------HHHHHHHhcCcEEECCCCce
Confidence 111000 00011222 2356899999999864432 3333333321 1
Q ss_pred CCCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhcC----CC---CCCCCCCH
Q 007591 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSKK----EL---PLAKDIDL 529 (597)
Q Consensus 468 ~~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~----~ILk~~l~~~----~l---~l~~dvdl 529 (597)
...++.||++|+.. ..+.+.|.. |+. .+.+..|...+|. .++..++.+. +. .+.++ .+
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~ 341 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE-AL 341 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHH-HH
Confidence 12356788888754 123334433 343 3455666655554 4555444332 21 23333 25
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
..|..+..-.+.++|++++..|+..+ ....|+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 66666665557799999999998766 34568888887655
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=4.3e-08 Score=100.08 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=80.2
Q ss_pred CCcCccccc-CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 327 DTITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~-G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
...+|++.. +.++.+..+..+..+..+ +. ....+++|+|+||||||+||.++|.++ +..++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~---~~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEE---FD----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHh---hc----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 456777764 334444455555544432 11 123489999999999999999999987 7889999998887
Q ss_pred HHhhcc---chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 403 ELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 403 ~~~vG~---~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
...... .......+++... ..++|+|||++... ..+....++.+++..- +... -.+|.+||
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~R--y~~~--~~tiitSN 203 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRR--SSSK--RPTGMLTN 203 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHH--HhCC--CCEEEeCC
Confidence 654332 1112234444433 45699999998753 1222334566666542 1212 24444777
Q ss_pred CC
Q 007591 480 RS 481 (597)
Q Consensus 480 rp 481 (597)
..
T Consensus 204 l~ 205 (244)
T PRK07952 204 SN 205 (244)
T ss_pred CC
Confidence 64
No 218
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=5.1e-08 Score=103.87 Aligned_cols=151 Identities=18% Similarity=0.291 Sum_probs=101.2
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC-------CeEEe---------ecchhHHHhh-----ccchHHHHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC---------SASEFVELYV-----GMGASRVRDLFARA 420 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------pfi~i---------s~se~~~~~v-----G~~~~~vr~lF~~A 420 (597)
.+.|..+||+||+|+||+++|.++|..+-+ +.=.+ +-+|+..... .-+...+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 467788999999999999999999987632 11000 0011110000 12345677776655
Q ss_pred Hh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcce
Q 007591 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (597)
Q Consensus 421 ~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~ 496 (597)
.. +...|++||++|.|.. +.-|.||+.|+. +..+.++|..|+.++.|.|.+++ |-.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred hhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 43 3456999999999963 445999999984 55677888889999999999998 543
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 007591 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (597)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G 538 (597)
.+.+++|+.++..+.|.... + .+++ ....+++.+.|
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~--~~~~-~a~~~~~la~G 196 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV---T--MSQD-ALLAALRLSAG 196 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc---C--CCHH-HHHHHHHHcCC
Confidence 68999999888877775431 2 2221 24455666666
No 219
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.81 E-value=1.1e-08 Score=106.38 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=121.7
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
.+..++-+++|++++++....+.+..+.-+. | ++|+|||||||||....+.|..+-.|.=.- +-+.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~~l-----------P-h~L~YgPPGtGktsti~a~a~~ly~~~~~~--~m~l 97 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMPGL-----------P-HLLFYGPPGTGKTSTILANARDFYSPHPTT--SMLL 97 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCCCC-----------C-cccccCCCCCCCCCchhhhhhhhcCCCCch--hHHH
Confidence 4556678899999999998888887543332 2 799999999999999999999876541100 0011
Q ss_pred HH----hhccch-HHHHHHHHHHHh-------cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCC
Q 007591 403 EL----YVGMGA-SRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (597)
Q Consensus 403 ~~----~vG~~~-~~vr~lF~~A~~-------~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~ 470 (597)
+. ..|-+. +.--..|..++. ..+..+++||+|++....+ |+|-..++.+..+.
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------nALRRviek~t~n~ 162 (360)
T KOG0990|consen 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------NALRRVIEKYTANT 162 (360)
T ss_pred HhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH---------------HHHHHHHHHhccce
Confidence 11 111111 112234544442 2577999999999986554 55555666666655
Q ss_pred cEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007591 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
.+. ..+|.+..+.|+++. |+. .+.+.+.+.......+.+++........++. ...+++. +-.|++..++.
T Consensus 163 rF~--ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~-~~a~~r~----s~gDmr~a~n~ 232 (360)
T KOG0990|consen 163 RFA--TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEG-YSALGRL----SVGDMRVALNY 232 (360)
T ss_pred EEE--EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHH-HHHHHHH----hHHHHHHHHHH
Confidence 444 568999999999987 665 5667777878888888888865443333221 2233333 33466655554
Q ss_pred H
Q 007591 551 A 551 (597)
Q Consensus 551 A 551 (597)
.
T Consensus 233 L 233 (360)
T KOG0990|consen 233 L 233 (360)
T ss_pred H
Confidence 3
No 220
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.79 E-value=3.7e-08 Score=111.81 Aligned_cols=191 Identities=14% Similarity=0.106 Sum_probs=132.2
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecchhHHHhhccch--H--------HHHHHHHHHHhcCCeEEEEcCc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGA--S--------RVRDLFARAKKEAPSIIFIDEI 433 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se~~~~~vG~~~--~--------~vr~lF~~A~~~~P~ILfIDEI 433 (597)
.||||.|++||||++++++++.-+. .||..+..+--....+|... . .-..++..|.. .||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999874 58888766555555555431 0 01223333333 39999999
Q ss_pred chhhhhcCCccccccchHHHHHHHHHHHhhcCC-----------CCCCcEEEEeecCCC---CCCChhhhCCCCcceEEE
Q 007591 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVM 499 (597)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-----------~~~~~VIVIaaTNrp---d~Ld~aLlRpgRFd~~I~ 499 (597)
..+. ..+++.|+.-|+.- .-...+++|++.|.. ..|.++++. ||+.++.
T Consensus 103 n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 8765 45778888888742 123568888874432 458899998 9999999
Q ss_pred ecCCCHHHHH-------HHHHHHHhcCCCCCCCCCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 007591 500 VETPDKIGRE-------AILKVHVSKKELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 500 v~~Pd~~eR~-------~ILk~~l~~~~l~l~~dvdl~~LA~~t--~G~-SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
++.|+..+.. +|.+..-.-.++.+.+.+ ++.++..+ .|. |.+--..+++-|..+|..+++..|+.+|+.
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~-l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPEA-IAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 9988755422 333333211234444332 44444322 354 778888899999999999999999999999
Q ss_pred HHHHHHhc
Q 007591 570 HAVERSIA 577 (597)
Q Consensus 570 ~Al~rvi~ 577 (597)
+|+.-++.
T Consensus 245 ~Aa~lvL~ 252 (584)
T PRK13406 245 LAARLVLA 252 (584)
T ss_pred HHHHHHHH
Confidence 99988874
No 221
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-08 Score=119.81 Aligned_cols=200 Identities=21% Similarity=0.281 Sum_probs=130.4
Q ss_pred ccceEEEecCCCCCchhHH--HHHhCCceeccCCCC----------------------------CcChHHHHHHHHHHHH
Q 007591 240 TKRIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR----------------------------SGGFLNSALIALFYVA 289 (597)
Q Consensus 240 ~~~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~----------------------------~~~~~~~~l~~l~~~~ 289 (597)
...+++|||||+++|++++ ++++++++|..|+.. +.||++++|.+||.+|
T Consensus 406 qVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 406 QVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEA 485 (1080)
T ss_pred ceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHH
Confidence 3457899999999999996 799999999998642 7899999999999999
Q ss_pred HHHHhhhccccccccccccccc---------------cccCCCCCC-ccccCCC---CcCcccccCChHHHHHHHHHHHH
Q 007591 290 VLAGLLHRFPVSFSQTAGQVGH---------------RKTRGPGGA-KVSEQGD---TITFADVAGVDEAKEELEEIVEF 350 (597)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~---~vtf~dV~G~de~k~~L~eiv~~ 350 (597)
++.++.+.+|..+.....-... .+..++..+ ......| .++. +++.....+.++..++.
T Consensus 486 al~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~--ll~~~~~~~~iq~~~~v 563 (1080)
T KOG0732|consen 486 ALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKP--LLPFQDALEDIQGLMDV 563 (1080)
T ss_pred hhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceec--ccchHHHHHHhhcchhH
Confidence 9999999998776542211100 000000000 0001111 0111 22233333333333221
Q ss_pred --------------hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-CCCeEEeecchhHHHh-hccchHHHH
Q 007591 351 --------------LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELY-VGMGASRVR 414 (597)
Q Consensus 351 --------------l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is~se~~~~~-vG~~~~~vr 414 (597)
++..+.+.....-....+++.|..|.|-+++..||.+.+ +.++.....+.+.... .+.....+.
T Consensus 564 a~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv 643 (1080)
T KOG0732|consen 564 ASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIV 643 (1080)
T ss_pred HhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHH
Confidence 111111001111123448899999999999999998876 6777777666665554 455677889
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcC
Q 007591 415 DLFARAKKEAPSIIFIDEIDAVAKSRD 441 (597)
Q Consensus 415 ~lF~~A~~~~P~ILfIDEIDaL~~~r~ 441 (597)
.+|.+|+...||||||-++|.+.....
T Consensus 644 ~i~~eaR~~~psi~~ip~~d~w~~~~p 670 (1080)
T KOG0732|consen 644 HIFMEARKTTPSIVFIPNVDEWARVIP 670 (1080)
T ss_pred HHHHHHhccCCceeeccchhhhhhcCc
Confidence 999999999999999999999876554
No 222
>PRK12377 putative replication protein; Provisional
Probab=98.78 E-value=4.7e-08 Score=99.99 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=49.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhccc--hHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAV 436 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~~--~~~vr~lF~~A~~~~P~ILfIDEIDaL 436 (597)
..+++|+||||||||+||.|+|+++ +..++.++..++.......- .....++++.. ....+|+|||++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 3589999999999999999999987 67888888888877543211 01112333333 34569999999764
No 223
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=1.2e-07 Score=97.10 Aligned_cols=178 Identities=18% Similarity=0.245 Sum_probs=123.6
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEe--------
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISC-------- 396 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~i-------- 396 (597)
+-+++.+.+.++....|..+...-. . .++|+|||+|+||.|.+.++.+++ |++=..+
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~~d-----------~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSSTGD-----------F-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcccCC-----------C-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 4457778888888888877664211 1 269999999999999999999976 2211111
Q ss_pred ----------ecchhHH---Hhhcc-chHHHHHHHHHHHhcCC---------eEEEEcCcchhhhhcCCccccccchHHH
Q 007591 397 ----------SASEFVE---LYVGM-GASRVRDLFARAKKEAP---------SIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (597)
Q Consensus 397 ----------s~se~~~---~~vG~-~~~~vr~lF~~A~~~~P---------~ILfIDEIDaL~~~r~~~~~~~~~~e~e 453 (597)
+....++ .-.|. ..--+++++++..+..| .+++|.|+|.|.+..+
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ------------ 144 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ------------ 144 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH------------
Confidence 1111111 01122 22346777777665443 4999999999986654
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 007591 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (597)
Q Consensus 454 ~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA 533 (597)
..|-..|+.+..+. -+|..+|....+-+++++++ ..|.++.|+.++...++...+.+.++.++.++ +..||
T Consensus 145 ---~aLRRTMEkYs~~~--RlIl~cns~SriIepIrSRC---l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~-l~rIa 215 (351)
T KOG2035|consen 145 ---HALRRTMEKYSSNC--RLILVCNSTSRIIEPIRSRC---LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL-LKRIA 215 (351)
T ss_pred ---HHHHHHHHHHhcCc--eEEEEecCcccchhHHhhhe---eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH-HHHHH
Confidence 45666777776654 45556777778888888732 36899999999999999999999998887664 78888
Q ss_pred HhCCC
Q 007591 534 SMTTG 538 (597)
Q Consensus 534 ~~t~G 538 (597)
+.+.|
T Consensus 216 ~kS~~ 220 (351)
T KOG2035|consen 216 EKSNR 220 (351)
T ss_pred HHhcc
Confidence 88866
No 224
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.6e-08 Score=105.77 Aligned_cols=97 Identities=37% Similarity=0.616 Sum_probs=69.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-Hhhccch-HHHHHHHHHHH----hcCCeEEEEcCcchhhhh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGA-SRVRDLFARAK----KEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-~~vG~~~-~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~ 439 (597)
.+|||.||+|+|||+||+.+|+-+++||..++|..+-. -|+|+.. ..+..++..|. +.+..|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 36999999999999999999999999999999998855 4788754 34555655542 233459999999999854
Q ss_pred cCCc--cccccchHHHHHHHHHHHhhcC
Q 007591 440 RDGR--FRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 440 r~~~--~~~~~~~e~e~~Ln~LL~emd~ 465 (597)
...- .+..+. +.+...||..++|
T Consensus 307 ~~~i~~~RDVsG---EGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSG---EGVQQALLKLLEG 331 (564)
T ss_pred Cccccccccccc---hhHHHHHHHHhcc
Confidence 4321 111222 3455566776665
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.73 E-value=6.7e-08 Score=101.78 Aligned_cols=102 Identities=25% Similarity=0.372 Sum_probs=64.9
Q ss_pred CcCcccccCCh-HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH
Q 007591 328 TITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 328 ~vtf~dV~G~d-e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~ 403 (597)
..+|+++...+ +....+..+.+++.. |.. ....+|++|+||+|||||+||.|+|+++ |.++..++.++|+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35666665443 333344444444432 211 2346799999999999999999999987 78888888888866
Q ss_pred Hhhcc-chHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007591 404 LYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (597)
Q Consensus 404 ~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEIDaL 436 (597)
..... ....+...++... ...+|+|||+.+-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 54322 1112334444433 3459999999653
No 226
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.73 E-value=3.3e-08 Score=107.96 Aligned_cols=205 Identities=22% Similarity=0.316 Sum_probs=121.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh---
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 406 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v--- 406 (597)
.++|.......+.+.+..+. .....++++|.+||||+++|+++.... +.||+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 35666665555544443322 234569999999999999999998654 57999999986643221
Q ss_pred --ccchH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----C----
Q 007591 407 --GMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S---- 468 (597)
Q Consensus 407 --G~~~~-------~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----~---- 468 (597)
|.... ....+|.. ..+++|||||||.|....+ ..|+..++.-. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~~~~q---------------~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPMMQ---------------VRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCCHHHH---------------HHHHHHHccCcEEeCCCCcee
Confidence 11000 00011222 2356999999999975432 34444443211 0
Q ss_pred CCcEEEEeecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCCCHH
Q 007591 469 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 530 (597)
Q Consensus 469 ~~~VIVIaaTNrpd~Ld~aLlRpgRFd~-------~I~v~~Pd~~eR~~----ILk~~l~~----~~l---~l~~dvdl~ 530 (597)
...+.+|++|+.+- ..+..+|+|.. .+.+..|+..+|.+ +++.++.+ .+. .+.++ .+.
T Consensus 272 ~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (441)
T PRK10365 272 SVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ-AMD 347 (441)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 12567888886641 12233445532 56777788877754 44444443 121 13333 356
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.|.......+.++|.++++.|+..+ ....|+.+++...+
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 6777775558899999999988753 44568888876544
No 227
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.72 E-value=4.3e-09 Score=96.93 Aligned_cols=112 Identities=28% Similarity=0.357 Sum_probs=58.8
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecc-hh-HHHhhccchHHHH-HHHHHHHh-cCCeEEEEcCcchhhhhcCC
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EF-VELYVGMGASRVR-DLFARAKK-EAPSIIFIDEIDAVAKSRDG 442 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~s-e~-~~~~vG~~~~~vr-~lF~~A~~-~~P~ILfIDEIDaL~~~r~~ 442 (597)
+|||.|+||+|||++|+++|+.++..|..|.+. ++ .+...|...-... ..|.-.+. --..|+++|||....++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappk--- 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPK--- 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HH---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHH---
Confidence 589999999999999999999999999888764 33 2222332100000 00000000 00139999999876543
Q ss_pred ccccccchHHHHHHHHHHHhhcC---------CCCCCcEEEEeecCCCC-----CCChhhhCCCCcc
Q 007591 443 RFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRSD-----VLDPALRRPGRFD 495 (597)
Q Consensus 443 ~~~~~~~~e~e~~Ln~LL~emd~---------~~~~~~VIVIaaTNrpd-----~Ld~aLlRpgRFd 495 (597)
+...||..|.. +.-...++||||-|+.+ .|+++++. ||-
T Consensus 78 ------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 78 ------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 44566666653 22245689999999875 78888887 773
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.2e-07 Score=100.25 Aligned_cols=133 Identities=19% Similarity=0.253 Sum_probs=90.8
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCe----EEeec---------chhHHH-----hhc------cchHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----ISCSA---------SEFVEL-----YVG------MGASRVRDLF 417 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf----i~is~---------se~~~~-----~vG------~~~~~vr~lF 417 (597)
.+.|..+||+||+|+||+++|.++|..+-+.- -.+.+ +|+.-. ..| -+...||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 45677899999999999999999998653210 00111 111100 001 1245667776
Q ss_pred HHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCC
Q 007591 418 ARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (597)
Q Consensus 418 ~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgR 493 (597)
+.+... .-.|++||++|.|.. ...|.||+.|+.-+ .++++|..|+.++.|.|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--h
Confidence 655432 235999999999963 34589999998543 456677778888999999998 5
Q ss_pred cceEEEecCCCHHHHHHHHHH
Q 007591 494 FDRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 494 Fd~~I~v~~Pd~~eR~~ILk~ 514 (597)
.. .+.|++|+.++..+.|..
T Consensus 164 Cq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 164 CQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred he-EeeCCCcCHHHHHHHHHH
Confidence 43 789999999887777754
No 229
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.70 E-value=3.9e-07 Score=102.28 Aligned_cols=208 Identities=18% Similarity=0.221 Sum_probs=119.0
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee-cchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is-~se~~ 402 (597)
+...+.+.+||+-+..-.++++..++.... +....+-+||+||||||||++++++|++++..+..-. ...+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 344567889999998776677766653211 2234456888999999999999999999987666532 21110
Q ss_pred ------HHhhccc---------hHHHHHH-HHHHHh-----------cCCeEEEEcCcchhhhhcCCccccccchHHHHH
Q 007591 403 ------ELYVGMG---------ASRVRDL-FARAKK-----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (597)
Q Consensus 403 ------~~~vG~~---------~~~vr~l-F~~A~~-----------~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~ 455 (597)
..+.+.. .....++ +..++. ..+.||+|||+-.+... ........
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~~ 155 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFREA 155 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHHHHHH
Confidence 0111110 0111221 111111 24569999999765421 11233333
Q ss_pred HHHHHHhhcCCCCCC-cEEEEeec-------CCC--------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC
Q 007591 456 LNQLLTEMDGFDSNS-AVIVLGAT-------NRS--------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (597)
Q Consensus 456 Ln~LL~emd~~~~~~-~VIVIaaT-------Nrp--------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~ 519 (597)
|.+++.. ... ++|+|.+- |.. ..+++.++.-.++ .+|.|.+-...-..+.|+..+...
T Consensus 156 L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 156 LRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 3333332 122 66776661 111 1456666653344 478888877777777777666543
Q ss_pred -----CCCCCC-CCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007591 520 -----ELPLAK-DID-LGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 520 -----~l~l~~-dvd-l~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
+....+ ... ++.|+..+.| ||+.+++.-...+.
T Consensus 230 ~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 230 ARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred hhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 221222 122 6677776654 99999998777766
No 230
>PRK08181 transposase; Validated
Probab=98.70 E-value=1.1e-07 Score=98.43 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=51.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
..+++|+||||||||+||.+++.++ |..+++++..+++..+... ........+.... .+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 4579999999999999999999754 7888889988888765321 1122333444332 35699999998754
No 231
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=2.3e-07 Score=98.19 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=92.1
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC-----------------------CeEEeecchhHHHhhccchHHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------------------PFISCSASEFVELYVGMGASRVRDLFA 418 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-----------------------pfi~is~se~~~~~vG~~~~~vr~lF~ 418 (597)
.+.|..+||+||.|+||+.+|+++|..+-+ .|+.+...+ .+ ..-+...+|++.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EG--KSITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CC--CcCCHHHHHHHHH
Confidence 466778999999999999999999986522 122221110 00 0013355677655
Q ss_pred HHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCc
Q 007591 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (597)
Q Consensus 419 ~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRF 494 (597)
.+.. +...|++||++|.+.. ..-|.||+.++. +..++++|..|+.++.|-|.+++ |.
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC 159 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC 159 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc
Confidence 5543 2346999999999863 345899999985 45567888888889999999998 53
Q ss_pred ceEEEecCCCHHHHHHHHHH
Q 007591 495 DRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 495 d~~I~v~~Pd~~eR~~ILk~ 514 (597)
. .+.|++|+.++..+.+..
T Consensus 160 q-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 Q-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred e-eEeCCCCCHHHHHHHHHH
Confidence 3 889999999888877754
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.67 E-value=1.7e-07 Score=99.68 Aligned_cols=70 Identities=23% Similarity=0.417 Sum_probs=50.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhcc---chHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~---~~~~vr~lF~~A~~~~P~ILfIDEIDaL 436 (597)
..+++|+||+|||||+||.|+|.++ +..+++++..+++..+... ........++... ...+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3789999999999999999999986 7889999998887765321 1111122233332 3459999999764
No 233
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.66 E-value=1.4e-08 Score=94.12 Aligned_cols=82 Identities=29% Similarity=0.477 Sum_probs=56.1
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC---CCeEEeecchhHHHhhccchH
Q 007591 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELYVGMGAS 411 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~se~~~~~vG~~~~ 411 (597)
+|...+.+.+++-+..+.. ....|||+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4666666777766665432 234599999999999999999998764 477777776542
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 007591 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (597)
Q Consensus 412 ~vr~lF~~A~~~~P~ILfIDEIDaL~~~r 440 (597)
.++++.+ ....|||+|||.|....
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHHH
Confidence 3455555 44599999999987543
No 234
>PF13173 AAA_14: AAA domain
Probab=98.60 E-value=2.8e-07 Score=84.33 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=69.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR 443 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~ 443 (597)
+.++|+||.|+|||++++.++.++. -.++++++.+.......... +.+.+.+.....+.+|||||++.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 4589999999999999999998876 77888887765443211111 22333332223567999999988731
Q ss_pred cccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCC----ChhhhCCCCcceEEEecCCCHHH
Q 007591 444 FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL----DPALRRPGRFDRVVMVETPDKIG 507 (597)
Q Consensus 444 ~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~L----d~aLlRpgRFd~~I~v~~Pd~~e 507 (597)
....+..+.. .. . ++-+|.|+.....+ ...+ .||.. .+.+.+.+..|
T Consensus 76 --------~~~~lk~l~d---~~-~--~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 --------WEDALKFLVD---NG-P--NIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred --------HHHHHHHHHH---hc-c--CceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 1233344433 11 1 22333333332222 2333 45765 77888887766
No 235
>PRK06526 transposase; Provisional
Probab=98.59 E-value=1.6e-07 Score=96.48 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=62.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~ 439 (597)
.+.+++|+||||||||+||.+++.++ |..++.+++.+++...... ........+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 35689999999999999999998875 6777777777776654321 111222233322 34569999999876421
Q ss_pred cCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 440 r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
......+.+++..... +. .+|.+||.+
T Consensus 175 ----------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 ----------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ----------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 2223445555554321 22 255577765
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.6e-07 Score=96.39 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=51.3
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhccchH-HHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~~~~-~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
.+.+++|+||||||||+||-|++.++ |..++.++.++++......-.. ....-+.... ....+|+|||+-...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCcc
Confidence 46789999999999999999999976 7899999999998764332111 1111122211 223499999997653
No 237
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=2.9e-07 Score=83.18 Aligned_cols=98 Identities=24% Similarity=0.359 Sum_probs=59.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc--------CCCeEEeecchhHH------H----hh----c-cchHHHHHHH-HHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSASEFVE------L----YV----G-MGASRVRDLF-ARA 420 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el--------g~pfi~is~se~~~------~----~v----G-~~~~~vr~lF-~~A 420 (597)
.+.++++||||+|||++++.++.++ ..+++.++++.... . +. . .....+.+.+ +..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 77888887654431 1 00 0 1222233333 333
Q ss_pred HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 421 ~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
......+|+|||+|.+. + ...++.|...++ ..+-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 34444599999999974 1 356667766666 333345555544
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=98.55 E-value=1.2e-07 Score=97.52 Aligned_cols=73 Identities=27% Similarity=0.380 Sum_probs=51.4
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhcc-chHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
...+++|+||||||||+||.+++.++ |..+.++++.++...+... ....+...+... ...+++++|||++.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 35679999999999999999997654 7788888888777543221 112234455443 2456799999997653
No 239
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=3.9e-07 Score=96.82 Aligned_cols=132 Identities=22% Similarity=0.296 Sum_probs=90.7
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC-------------------------CeEEeecchhHHHhhc-----cchH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------------------PFISCSASEFVELYVG-----MGAS 411 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------------------------pfi~is~se~~~~~vG-----~~~~ 411 (597)
.+.|..+||+||+|+|||++|+++|+.+.+ .|+.++...-. ...| -+..
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 377889999999999999999999997532 12222221000 0001 1346
Q ss_pred HHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChh
Q 007591 412 RVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (597)
Q Consensus 412 ~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~a 487 (597)
.+|++.+.+.. ....|++||++|.|.. ...+.+++.|+... .++.+|.+|+.++.+.+.
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNL---------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCH---------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 67888777754 3345999999998863 33477888887654 335566688888889899
Q ss_pred hhCCCCcceEEEecCCCHHHHHHHHHH
Q 007591 488 LRRPGRFDRVVMVETPDKIGREAILKV 514 (597)
Q Consensus 488 LlRpgRFd~~I~v~~Pd~~eR~~ILk~ 514 (597)
+.+ |. ..+.|++|+.++..+.|..
T Consensus 160 i~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 887 43 3788999999888777754
No 240
>PRK06921 hypothetical protein; Provisional
Probab=98.53 E-value=3e-07 Score=95.00 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=47.5
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
...+++|+||||||||+||.|+|+++ +..+++++..+++...... .......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 45689999999999999999999975 6778888877765543221 11122222222 2346999999943
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.50 E-value=8.3e-08 Score=93.39 Aligned_cols=70 Identities=29% Similarity=0.450 Sum_probs=49.0
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhccc-hHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~~-~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
.+.+++|+||||||||+||.+++.++ |.++..++.++++....... ......++..... ..+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccce
Confidence 45689999999999999999999875 88999999999988754321 1223344444433 35999999954
No 242
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.5e-07 Score=103.75 Aligned_cols=126 Identities=33% Similarity=0.403 Sum_probs=92.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCC-CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH----
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~-~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~---- 404 (597)
.|+|++++...+.+++..-+.- ++. .+.-.+||.||.|+|||-||+++|..+ .-.|+.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g-----l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG-----LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc-----cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 5899999999998888764321 111 356678999999999999999999976 468899999986552
Q ss_pred -----hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---------CCC
Q 007591 405 -----YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNS 470 (597)
Q Consensus 405 -----~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------~~~ 470 (597)
|+|. .....+.+..++...+||+|||||... ..+++.|++.+|... +..
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh---------------~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC---------------HHHHHHHHHHHhcCccccCCCcEeecc
Confidence 2332 334466777777777999999998753 245677777777532 134
Q ss_pred cEEEEeecCC
Q 007591 471 AVIVLGATNR 480 (597)
Q Consensus 471 ~VIVIaaTNr 480 (597)
++|||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 7899999876
No 243
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.45 E-value=6.9e-06 Score=90.81 Aligned_cols=209 Identities=13% Similarity=0.153 Sum_probs=111.2
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecc------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS------ 399 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~s------ 399 (597)
..+-+.+|++-+..-..++++.+..+ ..+ ...-..+-+||+||+|||||+.++.++.++|..++.-+.+
T Consensus 76 y~P~t~eeLAVHkkKI~eVk~WL~~~---~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~ 150 (634)
T KOG1970|consen 76 YKPRTLEELAVHKKKISEVKQWLKQV---AEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEP 150 (634)
T ss_pred cCcccHHHHhhhHHhHHHHHHHHHHH---HHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccc
Confidence 34456667766654444444433310 000 0112334688999999999999999999999877664311
Q ss_pred -------hhHHHhhccchHHHHHHHHHHH------------hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHH
Q 007591 400 -------EFVELYVGMGASRVRDLFARAK------------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 400 -------e~~~~~vG~~~~~vr~lF~~A~------------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL 460 (597)
.+........-.........+. ...|.+|+|||+-...... ....+..+|
T Consensus 151 ~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-----------~~~~f~evL 219 (634)
T KOG1970|consen 151 ENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-----------DSETFREVL 219 (634)
T ss_pred ccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-----------hHHHHHHHH
Confidence 1111111111111122222231 1346699999997765321 123334444
Q ss_pred HhhcCCCCCCcEEEEeecCCCCCCChhhhC------CCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCC-----CCCH
Q 007591 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRR------PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAK-----DIDL 529 (597)
Q Consensus 461 ~emd~~~~~~~VIVIaaTNrpd~Ld~aLlR------pgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~-----dvdl 529 (597)
.+.-......-|++|.-++.++..++..+. ..|++ .|.|.+-...-.++.|+.++.....++.+ ...+
T Consensus 220 ~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v 298 (634)
T KOG1970|consen 220 RLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEV 298 (634)
T ss_pred HHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHH
Confidence 443333333323333333333433333322 12554 67888877777888888888765555543 2223
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 530 GDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
+.++.. +++||+.+++...+.+
T Consensus 299 ~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 299 ELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHh----cCccHHHHHhHhhhhc
Confidence 444443 4569999999877765
No 244
>PF05729 NACHT: NACHT domain
Probab=98.38 E-value=4.3e-06 Score=77.87 Aligned_cols=141 Identities=16% Similarity=0.257 Sum_probs=74.6
Q ss_pred eeEEecCCCChHHHHHHHHHHhc------C--CC-eEEeecchhHHH------------hhccchHHHHH-HHHHHHhcC
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA------E--VP-FISCSASEFVEL------------YVGMGASRVRD-LFARAKKEA 424 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el------g--~p-fi~is~se~~~~------------~vG~~~~~vr~-lF~~A~~~~ 424 (597)
-++|+|+||+|||++++.++..+ . .+ ++.+.+.++... ........+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 47899999999999999998754 1 12 223333322111 01111111222 222334456
Q ss_pred CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC-CCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCC
Q 007591 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~-~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~P 503 (597)
+.+|+||.+|.+....+. .+.......+...+.. ..++..++|.+.+.....+...+.. ...+.+...
T Consensus 82 ~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 779999999998753321 1112222222223332 2333344443332222222222222 147899999
Q ss_pred CHHHHHHHHHHHHhc
Q 007591 504 DKIGREAILKVHVSK 518 (597)
Q Consensus 504 d~~eR~~ILk~~l~~ 518 (597)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988753
No 245
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.38 E-value=3.6e-06 Score=94.73 Aligned_cols=204 Identities=24% Similarity=0.241 Sum_probs=107.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEE-eecchhHHHhhccch-HHHHHHHHHHH---hcCCeEEEEcCcchhhh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFVELYVGMGA-SRVRDLFARAK---KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~-is~se~~~~~vG~~~-~~vr~lF~~A~---~~~P~ILfIDEIDaL~~ 438 (597)
.--+|||+|.||||||.+.+.+++-+..-.+. =.++.-+..-.+... ..-+++..+.- .....|.+|||+|.+..
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d 540 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD 540 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH
Confidence 34679999999999999999999876433322 111111111000000 00111111111 11234999999999853
Q ss_pred hcCCccccccchHHHHHHHHHHHhhcCC--CCCCcEEEEeecCCCC-------------CCChhhhCCCCcceEE-EecC
Q 007591 439 SRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVET 502 (597)
Q Consensus 439 ~r~~~~~~~~~~e~e~~Ln~LL~emd~~--~~~~~VIVIaaTNrpd-------------~Ld~aLlRpgRFd~~I-~v~~ 502 (597)
+.. .+.++..+|.--.+-. .|. .-+...-|||++|... .|+|.|++ |||.++ -++.
T Consensus 541 Str----SvLhEvMEQQTvSIAK--AGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~ 612 (804)
T KOG0478|consen 541 STR----SVLHEVMEQQTLSIAK--AGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDK 612 (804)
T ss_pred HHH----HHHHHHHHHhhhhHhh--cceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecC
Confidence 321 1122222221111111 111 1145567888998531 56899999 999765 5577
Q ss_pred CCHHHHHHHHH----HHHhcC--------------------CCCCCCCC---CHHHH-HH----hC----CC---CCHHH
Q 007591 503 PDKIGREAILK----VHVSKK--------------------ELPLAKDI---DLGDI-AS----MT----TG---FTGAD 543 (597)
Q Consensus 503 Pd~~eR~~ILk----~~l~~~--------------------~l~l~~dv---dl~~L-A~----~t----~G---~SgaD 543 (597)
||+..=+.|.. .|.... .-++.+.+ ....+ +. +. .| -+++.
T Consensus 613 ~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQ 692 (804)
T KOG0478|consen 613 PDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQ 692 (804)
T ss_pred cchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHH
Confidence 87762222222 222210 00011111 11111 10 00 11 35688
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 007591 544 LANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (597)
++.|++.+...|..+....+...|+++|+.-.
T Consensus 693 lesLiRlsEahak~r~s~~ve~~dV~eA~~l~ 724 (804)
T KOG0478|consen 693 LESLIRLSEAHAKMRLSNRVEEIDVEEAVRLL 724 (804)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 89999988888888888899999999997543
No 246
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.37 E-value=3.9e-06 Score=88.65 Aligned_cols=200 Identities=23% Similarity=0.302 Sum_probs=122.9
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~ 403 (597)
+...|+.+++.....+.+.+-... +..+. -.+||.|..||||-++||+..... ..||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k------~AmlD----APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK------LAMLD----APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH------hhccC----CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 445677788877665544433222 22221 139999999999999999986643 78999999987754
Q ss_pred Hh-----hcc--chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhc-C-C-------C
Q 007591 404 LY-----VGM--GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-G-F-------D 467 (597)
Q Consensus 404 ~~-----vG~--~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd-~-~-------~ 467 (597)
.. .|. +...-..+|+.|..+ .+|+|||..+.+.-+ ..||..+. | | +
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~lQ---------------aKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRLQ---------------AKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHHH---------------HHHHHHhcCCceeecCCcce
Confidence 32 122 123345778888766 899999987764433 23333332 1 1 1
Q ss_pred CCCcEEEEeecCCC--CCCChhhhCCC---CcceEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCC--CCHHHH
Q 007591 468 SNSAVIVLGATNRS--DVLDPALRRPG---RFDRVVMVETPDKIGREA--------ILKVHVSKKELPLAKD--IDLGDI 532 (597)
Q Consensus 468 ~~~~VIVIaaTNrp--d~Ld~aLlRpg---RFd~~I~v~~Pd~~eR~~--------ILk~~l~~~~l~l~~d--vdl~~L 532 (597)
-...|.||+||..+ +..+..-.|.. |+ .++.+..|...+|.+ ++..++.+.+++...- --+..|
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L 409 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVL 409 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 12469999999765 22222222211 22 267778888877753 4445555555543321 124555
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHH
Q 007591 533 ASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 533 A~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.++-+.-+.++|.|++-+|+.+.
T Consensus 410 ~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 410 TRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHcCCCccHHHHHHHHHHHHHHh
Confidence 66665557899999999998765
No 247
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.33 E-value=5.7e-06 Score=92.59 Aligned_cols=224 Identities=21% Similarity=0.191 Sum_probs=131.0
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccc
Q 007591 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~ 409 (597)
|..|.|++.+|.-+.-.+-. ...... .....+.--+|+++|.|||||+-+.+++++-+-.-++.. +..- .-.|-+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-GkaS--SaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKAS--SAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Cccc--ccccce
Confidence 56799999999866543322 221111 223344556899999999999999999998664443322 1100 001111
Q ss_pred hHHHHH-----HHHHHH---hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-----------CCCC
Q 007591 410 ASRVRD-----LFARAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNS 470 (597)
Q Consensus 410 ~~~vr~-----lF~~A~---~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-----------~~~~ 470 (597)
+.-+++ .--+|- -....|.+|||+|.+.-+.+ ..++..|+.. .-+.
T Consensus 420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq---------------vAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ---------------VAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred EEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH---------------HHHHHHHHhheehheecceEEeecc
Confidence 111100 000010 01234999999999864322 2334444421 1134
Q ss_pred cEEEEeecCCCC-------------CCChhhhCCCCcceEE-EecCCCHHHHHHHHHHHHhcCCCCCCCCC------CHH
Q 007591 471 AVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVSKKELPLAKDI------DLG 530 (597)
Q Consensus 471 ~VIVIaaTNrpd-------------~Ld~aLlRpgRFd~~I-~v~~Pd~~eR~~ILk~~l~~~~l~l~~dv------dl~ 530 (597)
+.-||||+|+.. .+++++++ |||..+ -++-|++..-..|-++.+.... .+.+.+ .++
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~-~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHR-GIDDATERVCVYTLE 561 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhc-cccccccccccccHH
Confidence 556888888742 56888998 999654 5577877666665555544310 111100 011
Q ss_pred ----------------------HHH---------------HhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 007591 531 ----------------------DIA---------------SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 531 ----------------------~LA---------------~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
.|. +.+.+.+.++|+.|++-+-..|.......||.+|+++|++
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 111 1134567899999999999999888999999999999987
Q ss_pred HHh
Q 007591 574 RSI 576 (597)
Q Consensus 574 rvi 576 (597)
-..
T Consensus 642 Llk 644 (764)
T KOG0480|consen 642 LLK 644 (764)
T ss_pred HHH
Confidence 543
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.33 E-value=3.8e-06 Score=77.58 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=62.9
Q ss_pred eEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh----------------------cc--chHHHHHHHHHH
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV----------------------GM--GASRVRDLFARA 420 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v----------------------G~--~~~~vr~lF~~A 420 (597)
++|+||||+|||+++..++..+ +.+++.++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56666666543322110 00 011112234555
Q ss_pred HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 421 ~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
....|.+|+|||+..+....... .........+.+..++..+. ..++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecC
Confidence 66778899999999987543210 00122233445555555543 2345555555544
No 249
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.32 E-value=5e-06 Score=101.90 Aligned_cols=179 Identities=19% Similarity=0.280 Sum_probs=101.1
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCe---EEeecc---h
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---ISCSAS---E 400 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf---i~is~s---e 400 (597)
+...+++++|.++..++|..++.. .....+-+-|+||+|+||||||+++++.....| +.++.. .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345688999999988888877642 123355688999999999999999988764433 111110 0
Q ss_pred hHHHhh-----------ccchHHHH-------------HHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHH
Q 007591 401 FVELYV-----------GMGASRVR-------------DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (597)
Q Consensus 401 ~~~~~v-----------G~~~~~vr-------------~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~L 456 (597)
....+. ......+. ..++......+.+|+|||++.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 000000 00000000 1122223456779999998642 123
Q ss_pred HHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-C-CHHHHHH
Q 007591 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-I-DLGDIAS 534 (597)
Q Consensus 457 n~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~d-v-dl~~LA~ 534 (597)
..+....+.+.. +-.||.||.+. .+++....+..+.++.|+.++..+++..++-+...+ .++ . ....+++
T Consensus 312 ~~L~~~~~~~~~--GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~ 383 (1153)
T PLN03210 312 DALAGQTQWFGS--GSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVAL 383 (1153)
T ss_pred HHHHhhCccCCC--CcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 334333333322 22344466643 333333467789999999999999999887543222 111 0 1234667
Q ss_pred hCCCCC
Q 007591 535 MTTGFT 540 (597)
Q Consensus 535 ~t~G~S 540 (597)
++.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 777754
No 250
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.31 E-value=2.6e-06 Score=97.68 Aligned_cols=221 Identities=26% Similarity=0.268 Sum_probs=128.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhC--CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEE-eecchhHHHhhccc
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG--ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFVELYVGMG 409 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg--~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~-is~se~~~~~vG~~ 409 (597)
.|.|++++|+.|.-.+-. -..+...-| .+.--+|||.|-||||||.|.+.+++-+-..++. -.++.- +|-+
T Consensus 287 sIyG~e~VKkAilLqLfg--Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLT 360 (682)
T COG1241 287 SIYGHEDVKKAILLQLFG--GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLT 360 (682)
T ss_pred cccCcHHHHHHHHHHhcC--CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCce
Confidence 589999998877644321 111111111 2333579999999999999999999876544332 222221 2222
Q ss_pred hHHHHHHH--H---HHH---hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-----------CCCC
Q 007591 410 ASRVRDLF--A---RAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNS 470 (597)
Q Consensus 410 ~~~vr~lF--~---~A~---~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-----------~~~~ 470 (597)
+..+++-. + .|- ...+.|++|||+|.+.... -+.+...|+.. .-+.
T Consensus 361 Aav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d---------------r~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 361 AAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED---------------RVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred eEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH---------------HHHHHHHHHhcEeeecccceeeecch
Confidence 22222222 0 110 1235599999999874221 13344444421 1134
Q ss_pred cEEEEeecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHH----HHHHHHHhc--------------
Q 007591 471 AVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGRE----AILKVHVSK-------------- 518 (597)
Q Consensus 471 ~VIVIaaTNrpd-------------~Ld~aLlRpgRFd~~I~v-~~Pd~~eR~----~ILk~~l~~-------------- 518 (597)
..-|+||+|... .|++.|++ |||..+.+ +.|+.+.=+ .++..|...
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 566788888753 56888999 99977655 456654333 344444210
Q ss_pred ----------------CCC-CCCCCCCHHHHH------Hh---------CCCCCHHHHHHHHHHHHHHHHhcCCccccHH
Q 007591 519 ----------------KEL-PLAKDIDLGDIA------SM---------TTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (597)
Q Consensus 519 ----------------~~l-~l~~dvdl~~LA------~~---------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (597)
..+ |.-.+...+.|. +. +...|.++|+.+++-|-..|..+-...|+.+
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEE 583 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence 001 111111111111 11 1235789999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007591 567 DFIHAVERSI 576 (597)
Q Consensus 567 d~~~Al~rvi 576 (597)
|+++|++-+.
T Consensus 584 D~~eAi~lv~ 593 (682)
T COG1241 584 DVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 251
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.31 E-value=2e-07 Score=99.22 Aligned_cols=221 Identities=24% Similarity=0.227 Sum_probs=113.1
Q ss_pred cccCChHHHHHHHHHHH-HhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh--HHHhh---
Q 007591 333 DVAGVDEAKEELEEIVE-FLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF--VELYV--- 406 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~-~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~--~~~~v--- 406 (597)
+|.|.+.+|..+--.+- ....... .....+..-++||+|.||||||.|.+.++.-+...+ ++++... .+...
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 57888887766543221 1110000 000123455899999999999999998866543222 3322211 00000
Q ss_pred ---ccchHHH-HHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----------CCCc
Q 007591 407 ---GMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSA 471 (597)
Q Consensus 407 ---G~~~~~v-r~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----------~~~~ 471 (597)
..++-.+ -..+-.|.. .|++|||+|.+... ....|+..|+.-. -+..
T Consensus 103 ~d~~~~~~~leaGalvlad~---GiccIDe~dk~~~~---------------~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLADG---GICCIDEFDKMKED---------------DRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp CCGGTSSECEEE-HHHHCTT---SEEEECTTTT--CH---------------HHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred cccccceeEEeCCchhcccC---ceeeecccccccch---------------HHHHHHHHHHcCeeccchhhhcccccch
Confidence 0000000 122334434 39999999987531 2355666666421 1346
Q ss_pred EEEEeecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHHHHhcCCC--------------CC
Q 007591 472 VIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKEL--------------PL 523 (597)
Q Consensus 472 VIVIaaTNrpd-------------~Ld~aLlRpgRFd~~I~v-~~Pd~~eR~~ILk~~l~~~~l--------------~l 523 (597)
.-|+|++|... .+++.|++ |||..+.+ +.|+.+.-..+.++.+..... .+
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPI 242 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCcc
Confidence 78899998754 47788888 99987665 667766555555554443210 11
Q ss_pred CCCCCHHHH--HH-----------------------h-------CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 007591 524 AKDIDLGDI--AS-----------------------M-------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 524 ~~dvdl~~L--A~-----------------------~-------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~A 571 (597)
..+.--..| |+ . ....+.+.|+.+++-|...|..+-+..|+.+|+..|
T Consensus 243 ~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~A 322 (331)
T PF00493_consen 243 SEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEA 322 (331)
T ss_dssp -HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHH
Confidence 111111111 11 0 112456788899999999999999999999999999
Q ss_pred HHHH
Q 007591 572 VERS 575 (597)
Q Consensus 572 l~rv 575 (597)
++=.
T Consensus 323 i~L~ 326 (331)
T PF00493_consen 323 IRLF 326 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8644
No 252
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.28 E-value=2.1e-06 Score=93.85 Aligned_cols=231 Identities=22% Similarity=0.188 Sum_probs=134.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe-ecchhHHHhhccch
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGA 410 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i-s~se~~~~~vG~~~ 410 (597)
.+|.|++++|+.|.-++-.--+...-..+.++..-+|+|.|.||+-|+-|.+.+.+-+-.-.+.. .++. -+|.++
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLTA 417 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLTA 417 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccch
Confidence 36999999999998776542221111222344456799999999999999999988765544442 1211 133333
Q ss_pred HHHHHHH-----------HHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 411 SRVRDLF-----------ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 411 ~~vr~lF-----------~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
.-+++-. -.|. ..|.+|||+|.+.... +...++..+|.--.+-+.--.-.-+.+.-|+||.|
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~D----RtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDESD----RTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hhhcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhhh----hHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 3222211 1111 3499999999986432 12334444433222222100011245667888888
Q ss_pred CCC-------------CCChhhhCCCCcceEE-EecCCCHHHHHHHHHHHHh----cCCCCCC-CCCCHHH---------
Q 007591 480 RSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVS----KKELPLA-KDIDLGD--------- 531 (597)
Q Consensus 480 rpd-------------~Ld~aLlRpgRFd~~I-~v~~Pd~~eR~~ILk~~l~----~~~l~l~-~dvdl~~--------- 531 (597)
... .|++||++ |||... -.+.||.+.-+.+.++... .+.-++. +.++.+.
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 631 67899999 999654 3467776555544443321 1110100 0112111
Q ss_pred ---------HH--------------H--hCC-CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 007591 532 ---------IA--------------S--MTT-GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 532 ---------LA--------------~--~t~-G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (597)
|+ + ... -.|++-|..+++-+..+|..+-...|..+|+++|+.-.
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 11 0 001 13678899999999989988888999999999999643
No 253
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.28 E-value=3.9e-06 Score=90.44 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=61.8
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC-CeEEeecchhHHHhhc------cchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFVELYVG------MGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-pfi~is~se~~~~~vG------~~~~~vr~lF~~A~~~~P~ILfIDEID 434 (597)
..+|+|++||||+|+|||+|.-.+...+.. .-..++-.+|+..... ....-+..+-+..... ..||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 457999999999999999999999887643 1111121223221100 0112233333333333 2399999986
Q ss_pred hhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 435 aL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.-- -....++..|+..+- ..++++|+|+|++
T Consensus 138 V~D------------iaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD------------IADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ccc------------hhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 421 112355666777664 4678999999986
No 254
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.26 E-value=3.1e-05 Score=78.96 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=116.6
Q ss_pred eeEEecCCCChHHHHHHHHHHhcC---CCeEEeecc-----hhHHHhhcc------------chHHHHHHHHHHHhc-CC
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-----EFVELYVGM------------GASRVRDLFARAKKE-AP 425 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~s-----e~~~~~vG~------------~~~~vr~lF~~A~~~-~P 425 (597)
-+.++|+-|+|||+++|++..-++ +-.++++.. .+...++.+ .+..-+.+....++. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 367899999999999997766542 222344332 222222221 112223444444443 46
Q ss_pred eEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC-CChhhhC-CCCcceEEEecCC
Q 007591 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV-LDPALRR-PGRFDRVVMVETP 503 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~-Ld~aLlR-pgRFd~~I~v~~P 503 (597)
.++++||++.+..+.- ..+.-|.+.-+++...-.+++|+-..-... --+.+.- .-|++-.|.+++.
T Consensus 133 v~l~vdEah~L~~~~l------------e~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 133 VVLMVDEAHDLNDSAL------------EALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred eEEeehhHhhhChhHH------------HHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 8999999999864321 122222222223333345666655422111 1111110 1277766888999
Q ss_pred CHHHHHHHHHHHHhcCC--CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 007591 504 DKIGREAILKVHVSKKE--LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (597)
Q Consensus 504 d~~eR~~ILk~~l~~~~--l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (597)
+.++-...++.+++.-+ .++..+-.+..++..+.| .|+-+.+++..|...|...+...|+...+.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 99999999999997642 233334346778888888 789999999999999999999988877654
No 255
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.23 E-value=2.7e-05 Score=79.86 Aligned_cols=174 Identities=22% Similarity=0.290 Sum_probs=90.7
Q ss_pred HHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHh--cCCC-----eEEeecc----hhHH----Hhhc
Q 007591 343 ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVP-----FISCSAS----EFVE----LYVG 407 (597)
Q Consensus 343 ~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~e--lg~p-----fi~is~s----e~~~----~~vG 407 (597)
+++++.+.|.... ...+-|.|+|++|+|||+||+.+++. ..-. ++.+... ++.. ....
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4555555544321 34567889999999999999999987 3222 2233211 1111 1111
Q ss_pred --------cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 408 --------MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 408 --------~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
.......+.+.......+++|+||+++... .+..+...+.... .+.-||.||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCHH--SS-EEEEEES
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc-----------------ccccccccccccc--cccccccccc
Confidence 112233444445555669999999987542 1122222222112 2334555666
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC-CCC-CCCCHHHHHHhCCCCCHHHHHHH
Q 007591 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL-PLA-KDIDLGDIASMTTGFTGADLANL 547 (597)
Q Consensus 480 rpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l-~l~-~dvdl~~LA~~t~G~SgaDL~~L 547 (597)
...... ... .-+..+.++..+.++-.+++...+..... ... .+-....|++.|.| .|-.|.-+
T Consensus 138 ~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 138 DRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp CGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccc-ccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 543221 111 11468999999999999999998765330 111 11235788999977 55555433
No 256
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.20 E-value=3.6e-06 Score=87.34 Aligned_cols=138 Identities=22% Similarity=0.369 Sum_probs=75.3
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCC-C--eEEeecchhHHHhhccchHHHHHHHHHHH-----------hcCCeEEEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV-P--FISCSASEFVELYVGMGASRVRDLFARAK-----------KEAPSIIFI 430 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~-p--fi~is~se~~~~~vG~~~~~vr~lF~~A~-----------~~~P~ILfI 430 (597)
.+.+||+||+|||||++++....++.- . ...++++.. .++..++.+++... .+..+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 357999999999999999998876542 2 223333321 12222333222211 123469999
Q ss_pred cCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC-C-------CcEEEEeecCCC---CCCChhhhCCCCcceEEE
Q 007591 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-N-------SAVIVLGATNRS---DVLDPALRRPGRFDRVVM 499 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~-~-------~~VIVIaaTNrp---d~Ld~aLlRpgRFd~~I~ 499 (597)
||+..-....-+ . ...-..|.|++.. .|+-. . .++.+|||++.+ ..+++.++| .|. ++.
T Consensus 107 DDlN~p~~d~yg-----t-q~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~ 176 (272)
T PF12775_consen 107 DDLNMPQPDKYG-----T-QPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILN 176 (272)
T ss_dssp ETTT-S---TTS--------HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE
T ss_pred cccCCCCCCCCC-----C-cCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEE
Confidence 999765433211 1 1112233333332 12211 1 368888888754 357888887 665 899
Q ss_pred ecCCCHHHHHHHHHHHHhc
Q 007591 500 VETPDKIGREAILKVHVSK 518 (597)
Q Consensus 500 v~~Pd~~eR~~ILk~~l~~ 518 (597)
++.|+.+....|+...+..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999999887777653
No 257
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.20 E-value=6.6e-06 Score=92.48 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=119.2
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc--CCCeEEeecchhHHH-----hhc
Q 007591 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVEL-----YVG 407 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el--g~pfi~is~se~~~~-----~vG 407 (597)
++.+...+.+...++.+... .-.+|+.|.|||||-.+|+++.... .-||+.++|..+.+. ++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----------~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----------DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----------CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 45555555555444443221 2249999999999999999997654 579999999755443 222
Q ss_pred cch--------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh-----hcCCCCCCcEEE
Q 007591 408 MGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDGFDSNSAVIV 474 (597)
Q Consensus 408 ~~~--------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e-----md~~~~~~~VIV 474 (597)
..+ +-.+..+++|..+ .+|+|||..|.-.-+ ..|-+.|++ +.+-...-.|-|
T Consensus 386 y~~GafTga~~kG~~g~~~~A~gG---tlFldeIgd~p~~~Q------------s~LLrVl~e~~v~p~g~~~~~vdirv 450 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADGG---TLFLDEIGDMPLALQ------------SRLLRVLQEGVVTPLGGTRIKVDIRV 450 (606)
T ss_pred cCccccccchhccccccceecCCC---ccHHHHhhhchHHHH------------HHHHHHHhhCceeccCCcceeEEEEE
Confidence 222 2223333333333 899999988763322 223333333 222223346899
Q ss_pred EeecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH---HHHHHHhcCC---CCCCCCCCHHHHHHhCCCCCH
Q 007591 475 LGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA---ILKVHVSKKE---LPLAKDIDLGDIASMTTGFTG 541 (597)
Q Consensus 475 IaaTNrpd~Ld~aLlRpgRFd~-------~I~v~~Pd~~eR~~---ILk~~l~~~~---l~l~~dvdl~~LA~~t~G~Sg 541 (597)
|+||+++ -..|.+.|||-+ .+.+.+|...+|.+ .|..++.+++ +.++++. +..|...-.--+.
T Consensus 451 i~ath~d---l~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~~l~~~~WPGNi 526 (606)
T COG3284 451 IAATHRD---LAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LARLLAYRWPGNI 526 (606)
T ss_pred EeccCcC---HHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHH-HHHHHhCCCCCcH
Confidence 9999886 345666777743 34556677777653 4444444432 2333332 3333333333478
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
++|.+++..++..+ +...|...|+...+
T Consensus 527 rel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 527 RELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred HHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 99999999888765 33334444444433
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.17 E-value=7.1e-06 Score=80.85 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=66.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH-HHhhcc----------------------chHHHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-ELYVGM----------------------GASRVR 414 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~-~~~vG~----------------------~~~~vr 414 (597)
|.+...-++++||||+|||+++..++.+. +...++++..++. ..+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 45566678999999999999999987643 6677877776421 111000 011133
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 415 ~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
.+.+.+....+++|+||-|.++....... ....+.+.+..++..|..+....++.++.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~----~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC----ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 34444555578999999999986432111 11122233333333343333345566666654
No 259
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=1.2e-05 Score=84.00 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeec--------chhHHHh-hc----cchHHHHHHHHHHHh----cC
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA--------SEFVELY-VG----MGASRVRDLFARAKK----EA 424 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~--------se~~~~~-vG----~~~~~vr~lF~~A~~----~~ 424 (597)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-.| +|+.... .+ -+...+|++.+.+.. +.
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 4567789999999999999999999976432000001 1110000 11 134566777666543 23
Q ss_pred CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCC
Q 007591 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~P 503 (597)
..|++||++|.+... .-|.||+.|+. +..++++|..|+.++.|.|.+++ |.. .+.|+++
T Consensus 96 ~kv~ii~~ad~mt~~---------------AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTLD---------------AISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhcCHH---------------HHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 459999999999743 44889999985 45567777788889999999988 532 5566544
No 260
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.00011 Score=75.61 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=80.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCC-----eEEe-ec--------chhHHHhh---ccchHHHHHHHHHHHh---
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISC-SA--------SEFVELYV---GMGASRVRDLFARAKK--- 422 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~p-----fi~i-s~--------se~~~~~v---G~~~~~vr~lF~~A~~--- 422 (597)
.+|..+||+||+|+||..+|.++|..+-+. .=.+ +| +|+.-.+. .-+...+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999865221 1000 00 11110000 1234556666655432
Q ss_pred --cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEe
Q 007591 423 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (597)
Q Consensus 423 --~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v 500 (597)
....|++||++|.+.. ...|.||..++. +..++++|..|+.++.+.|.+++ |-. .+.+
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeec
Confidence 2346999999999863 445899999984 55677888888889999999998 532 4556
Q ss_pred cCC
Q 007591 501 ETP 503 (597)
Q Consensus 501 ~~P 503 (597)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 555
No 261
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=8.8e-05 Score=78.10 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=86.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCC-----------C--eEEeecchhHHHhhccchHHHHHHHHHHHh-----cC
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------P--FISCSASEFVELYVGMGASRVRDLFARAKK-----EA 424 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~-----------p--fi~is~se~~~~~vG~~~~~vr~lF~~A~~-----~~ 424 (597)
+.++..||+|+.|.||+.+|+.++..+-+ | ++.++... ...+...++++.+.+.. +.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 45567899999999999999999987622 2 22222000 01123456666666532 24
Q ss_pred CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCC
Q 007591 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (597)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd 504 (597)
..|++||++|.+.. +..|.||..|+.. ...+++|..|+.++.|-+.++++|+ ++.+.+|+
T Consensus 91 ~KvvII~~~e~m~~---------------~a~NaLLK~LEEP--p~~t~~il~~~~~~kll~TI~SRc~---~~~f~~l~ 150 (299)
T PRK07132 91 KKILIIKNIEKTSN---------------SLLNALLKTIEEP--PKDTYFLLTTKNINKVLPTIVSRCQ---VFNVKEPD 150 (299)
T ss_pred ceEEEEecccccCH---------------HHHHHHHHHhhCC--CCCeEEEEEeCChHhChHHHHhCeE---EEECCCCC
Confidence 56999999988752 3458899999863 3445566566677888888887333 78999998
Q ss_pred HHHHHHHHHH
Q 007591 505 KIGREAILKV 514 (597)
Q Consensus 505 ~~eR~~ILk~ 514 (597)
.++..+.+..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 262
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.06 E-value=3.2e-05 Score=84.88 Aligned_cols=228 Identities=25% Similarity=0.290 Sum_probs=125.1
Q ss_pred cccCChHHHHHHHHHHHHh---cChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccc
Q 007591 333 DVAGVDEAKEELEEIVEFL---RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l---~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~ 409 (597)
.|.|.+++|+.+.-++-.- ..|+ .+..+.--+|||.|.|||.|+-|.|.+-.-+-+-++. ++.. +.-.|.+
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpD---g~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLT 405 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPD---GVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLT 405 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCC---cceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccce
Confidence 4789999988887766321 1111 1122334579999999999999999886654333322 1110 0001111
Q ss_pred hHHHHHH-----------HHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 410 ASRVRDL-----------FARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 ~~~vr~l-----------F~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
++-+|+- +-.| ...|++|||+|.+-... +..-++..+|.--.+-..--.-.-+++.-|+||.
T Consensus 406 ASV~RD~~tReFylEGGAMVLA---DgGVvCIDEFDKMre~D----RVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAA 478 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLA---DGGVVCIDEFDKMREDD----RVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAA 478 (729)
T ss_pred eeEEecCCcceEEEecceEEEe---cCCEEEeehhhccCchh----hhHHHHHHHhhhHHHhhhcceeeecchhhhhhhc
Confidence 1111110 0111 23499999999985321 2233444444333322211011124566788888
Q ss_pred CCC-----------CCC--ChhhhCCCCcceEEEecCCCHHHHH-----HHHHHHHhcCCCCCC------CCCCHHHHHH
Q 007591 479 NRS-----------DVL--DPALRRPGRFDRVVMVETPDKIGRE-----AILKVHVSKKELPLA------KDIDLGDIAS 534 (597)
Q Consensus 479 Nrp-----------d~L--d~aLlRpgRFd~~I~v~~Pd~~eR~-----~ILk~~l~~~~l~l~------~dvdl~~LA~ 534 (597)
|.+ +.+ -+.+++ |||..+-|.--..+++- .++..|..+.+..-. ..+.++.+-+
T Consensus 479 NpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~Kr 556 (729)
T KOG0481|consen 479 NPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKR 556 (729)
T ss_pred CCccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHH
Confidence 875 223 377788 99998888765444333 345555542211111 1122222211
Q ss_pred ------------------------------------------hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 535 ------------------------------------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 535 ------------------------------------------~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
.+-..+.++|+.+++-+-.+|..+-....|..|+++|+
T Consensus 557 yI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~ 636 (729)
T KOG0481|consen 557 YIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEAL 636 (729)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHH
Confidence 01123568888888888888888888888999999998
Q ss_pred HHH
Q 007591 573 ERS 575 (597)
Q Consensus 573 ~rv 575 (597)
+-.
T Consensus 637 RLF 639 (729)
T KOG0481|consen 637 RLF 639 (729)
T ss_pred HHH
Confidence 653
No 263
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=7.9e-05 Score=78.09 Aligned_cols=129 Identities=17% Similarity=0.248 Sum_probs=82.8
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC-------CeEEe---------ecchhHHHh-hc--cchHHHHHHHHHHHh
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC---------SASEFVELY-VG--MGASRVRDLFARAKK 422 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------pfi~i---------s~se~~~~~-vG--~~~~~vr~lF~~A~~ 422 (597)
.+.+..+||+|| +||+++|+++|..+-+ |.=.+ +.+|+.... .| -+...+|++...+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 466778999996 6899999999986522 11111 011211110 01 134567777666643
Q ss_pred ----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEE
Q 007591 423 ----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (597)
Q Consensus 423 ----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I 498 (597)
+...|++||++|.+.. ..-|.||+.++. +..++++|..|+.++.|-|.+++ |.. .+
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-ee
Confidence 2346999999999863 345899999985 44556777788888889999988 432 67
Q ss_pred EecCCCHHHHHHHHH
Q 007591 499 MVETPDKIGREAILK 513 (597)
Q Consensus 499 ~v~~Pd~~eR~~ILk 513 (597)
.|+. +.++..+++.
T Consensus 159 ~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 159 HFPK-NEAYLIQLLE 172 (290)
T ss_pred eCCC-cHHHHHHHHH
Confidence 7755 4444444443
No 264
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.00 E-value=1.9e-05 Score=79.54 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch----------hHHHhhccchHHHHHHHHHHH--hcCCeEEEEc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE----------FVELYVGMGASRVRDLFARAK--KEAPSIIFID 431 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se----------~~~~~vG~~~~~vr~lF~~A~--~~~P~ILfID 431 (597)
.|..+||||+||+|||++|+.+++. ..++..+++. .+..-.......+.+.+..+. ...+.+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 3667999999999999999999742 2223332211 000000111123333333332 2345699999
Q ss_pred Ccchhhh
Q 007591 432 EIDAVAK 438 (597)
Q Consensus 432 EIDaL~~ 438 (597)
+|+.|..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999865
No 265
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.00 E-value=1.5e-05 Score=75.97 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=35.5
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC---eEEeecchh
Q 007591 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 401 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p---fi~is~se~ 401 (597)
++|.++..++|...+.. . ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57788777776666641 1 13456789999999999999999987765322 666666555
No 266
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.98 E-value=6e-05 Score=72.36 Aligned_cols=71 Identities=25% Similarity=0.277 Sum_probs=45.6
Q ss_pred eEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh------cc-----------------------chH----
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM-----------------------GAS---- 411 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v------G~-----------------------~~~---- 411 (597)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 66777776542222110 10 000
Q ss_pred -HHHHHHHHHHhcCCeEEEEcCcchhhh
Q 007591 412 -RVRDLFARAKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 412 -~vr~lF~~A~~~~P~ILfIDEIDaL~~ 438 (597)
....+...+....|.+|+|||+..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 123344444566789999999988753
No 267
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.92 E-value=0.00011 Score=74.49 Aligned_cols=130 Identities=19% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~ 444 (597)
..+-.++||+|||||.++|.+|..+|.+++.++|++-.+ ...+..+|.-+... .+-+++||++.|....-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~vL--- 101 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEVL--- 101 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHHH---
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHHH---
Confidence 346789999999999999999999999999999987543 45667777666554 46999999998753221
Q ss_pred ccccchHHHHHHHHHHHhhcCCCC-----------CCcEEEEeecCC----CCCCChhhhCCCCcceEEEecCCCHHHHH
Q 007591 445 RIVSNDEREQTLNQLLTEMDGFDS-----------NSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGRE 509 (597)
Q Consensus 445 ~~~~~~e~e~~Ln~LL~emd~~~~-----------~~~VIVIaaTNr----pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~ 509 (597)
....+.+..+...+..-.. +...-++.|.|. ...|++.|+. +-+.|.+..||.....
T Consensus 102 -----S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ 173 (231)
T PF12774_consen 102 -----SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIA 173 (231)
T ss_dssp -----HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHH
T ss_pred -----HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHH
Confidence 1111222233222221110 122333445553 2578888865 3468899999776554
Q ss_pred HHH
Q 007591 510 AIL 512 (597)
Q Consensus 510 ~IL 512 (597)
+++
T Consensus 174 ei~ 176 (231)
T PF12774_consen 174 EIL 176 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 268
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.90 E-value=2.4e-05 Score=82.91 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHhcChhH----HhhhC---CCCCCeeEEecCCCChHHHHHHHHHHhcCCCe-EEeecchhHHH----
Q 007591 337 VDEAKEELEEIVEFLRSPDK----YIRLG---ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEFVEL---- 404 (597)
Q Consensus 337 ~de~k~~L~eiv~~l~~p~~----~~~lg---~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf-i~is~se~~~~---- 404 (597)
+..+.+.|..+.+.+..+.. +..+. ..+++|+.|||+-|.|||+|.-.....+-.+- ..+.-..|+-.
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 44555666666554322221 11122 34789999999999999999999988764322 22221222211
Q ss_pred ---hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 405 ---YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 405 ---~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
..|.. .-+..+-....+ .-.||+|||++. .+-...-++..|+.+|= ..+|++++|+|.+
T Consensus 110 l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF~V------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 110 LHTLQGQT-DPLPPIADELAA-ETRVLCFDEFEV------------TDIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHcCCC-CccHHHHHHHHh-cCCEEEeeeeee------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 12222 111111111112 224999999853 11122356677777764 3589999999975
Q ss_pred -CCC
Q 007591 482 -DVL 484 (597)
Q Consensus 482 -d~L 484 (597)
+.|
T Consensus 172 P~~L 175 (367)
T COG1485 172 PDNL 175 (367)
T ss_pred hHHh
Confidence 444
No 269
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.90 E-value=1.2e-05 Score=94.84 Aligned_cols=205 Identities=15% Similarity=0.204 Sum_probs=121.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChh--HHhhhCCCC-CC-eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPD--KYIRLGARP-PR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~--~~~~lg~~~-p~-gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
.+....++.|.......+.+-++..++++ .|...+... .. .+|++||||+|||+.|.++|.++|..++..+.++..
T Consensus 315 ~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 315 QPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred ccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 34445666666655554444443332221 121111111 12 379999999999999999999999999999988665
Q ss_pred HHhhc-----c--chHHHHHHHH---HHHh-cCC-eEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCC
Q 007591 403 ELYVG-----M--GASRVRDLFA---RAKK-EAP-SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (597)
Q Consensus 403 ~~~vG-----~--~~~~vr~lF~---~A~~-~~P-~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~ 470 (597)
+.... . +...+...|. .... ... -||++||+|.+.. .+ +..+.++...+. ..
T Consensus 395 Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~d-----------Rg~v~~l~~l~~----ks 458 (871)
T KOG1968|consen 395 SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-ED-----------RGGVSKLSSLCK----KS 458 (871)
T ss_pred cccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hh-----------hhhHHHHHHHHH----hc
Confidence 43211 1 1122223330 0000 112 2999999999875 11 112223333332 23
Q ss_pred cEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007591 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
.+-||+++|..+......+. |-+..++|+.|+...+..-+...+...++.+.++ .++.+...+ ++||++.+..
T Consensus 459 ~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcH-HHHHHHHhc----ccCHHHHHHH
Confidence 34566677765544432222 4445789999999999988888888777777766 478888776 5588777776
Q ss_pred HHHH
Q 007591 551 AALL 554 (597)
Q Consensus 551 Aal~ 554 (597)
-...
T Consensus 532 lq~~ 535 (871)
T KOG1968|consen 532 LQFW 535 (871)
T ss_pred Hhhh
Confidence 5444
No 270
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.87 E-value=1.4e-05 Score=71.16 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred eEEecCCCChHHHHHHHHHHhcC
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg 390 (597)
|.|+||||+|||++|+.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988653
No 271
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.85 E-value=7.5e-05 Score=74.61 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=63.5
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH----HHhhcc-------------------chHHHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----ELYVGM-------------------GASRVR 414 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~----~~~vG~-------------------~~~~vr 414 (597)
|.+...-++|+||||+|||++|..+|.+. +.++++++...+. ....+. ....+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 45566678999999999999999998743 6777787776221 111110 001112
Q ss_pred HHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 415 ~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
.+..... ..+++|+||-+.++....-.. .....+..+.+.+++..|..+....++.||.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~--~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED--EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2222122 578899999999987542100 0122233344444443333332334556665543
No 272
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.84 E-value=0.00019 Score=78.40 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=38.7
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh----cCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e----lg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
..++++.||+|||||++|.+++.. .| -.++...++.... . ..+.. -....+|+|||+..+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCc
Confidence 357999999999999999998776 24 2233333332211 1 11111 2345699999998764
No 273
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.84 E-value=8.5e-05 Score=82.37 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=57.7
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh------cc--------chHHHHHHHHHHHhc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v------G~--------~~~~vr~lF~~A~~~ 423 (597)
|..+..-+||+||||+|||+|+..++... +.++++++..+-.+... |. .+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45566678999999999999999998754 67888888765443321 11 122356677777777
Q ss_pred CCeEEEEcCcchhhhh
Q 007591 424 APSIIFIDEIDAVAKS 439 (597)
Q Consensus 424 ~P~ILfIDEIDaL~~~ 439 (597)
.|.+|+||+|..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988643
No 274
>PHA00729 NTP-binding motif containing protein
Probab=97.83 E-value=4e-05 Score=77.41 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.6
Q ss_pred eeEEecCCCChHHHHHHHHHHhcC
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
+++|+|+||||||+||.+++.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 275
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00016 Score=85.10 Aligned_cols=179 Identities=24% Similarity=0.306 Sum_probs=115.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEeecchhH--HHhhccchHHHHHHHHHHHh-cCCeEEEEc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFID 431 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is~se~~--~~~vG~~~~~vr~lF~~A~~-~~P~ILfID 431 (597)
.++-+|+|.||+|||.++.-+|+.. +..++.++...++ .++.|+.+.+++.+.+.+.. ....|||||
T Consensus 208 k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfig 287 (898)
T KOG1051|consen 208 KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLG 287 (898)
T ss_pred CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 3678999999999999999999854 3455666655333 35678888999999999884 455699999
Q ss_pred CcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC-----CCCChhhhCCCCcceEEEecCCCHH
Q 007591 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-----DVLDPALRRPGRFDRVVMVETPDKI 506 (597)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp-----d~Ld~aLlRpgRFd~~I~v~~Pd~~ 506 (597)
|++-+...... .......|-|.-.+. +.++-+|+||... -.=||++-| ||+ .+.++.|+..
T Consensus 288 elh~lvg~g~~-------~~~~d~~nlLkp~L~----rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~ 353 (898)
T KOG1051|consen 288 ELHWLVGSGSN-------YGAIDAANLLKPLLA----RGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVE 353 (898)
T ss_pred ceeeeecCCCc-------chHHHHHHhhHHHHh----cCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCccc
Confidence 99998765432 112233333333222 3448888877532 244899999 998 7889999988
Q ss_pred HHHHHHHHHHhcCCCCCCCCC------CHHHHH--HhCCCCCHHHHHHHHHHHHHHHHh
Q 007591 507 GREAILKVHVSKKELPLAKDI------DLGDIA--SMTTGFTGADLANLVNEAALLAGR 557 (597)
Q Consensus 507 eR~~ILk~~l~~~~l~l~~dv------dl~~LA--~~t~G~SgaDL~~Lv~eAal~A~r 557 (597)
.-..||......+.++....+ ....+. ..+..+-+.-..+++++|+.....
T Consensus 354 ~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~ 412 (898)
T KOG1051|consen 354 NLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKS 412 (898)
T ss_pred chhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhh
Confidence 877777766555322221111 111122 223334455677888888766543
No 276
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.82 E-value=9.5e-05 Score=80.12 Aligned_cols=79 Identities=29% Similarity=0.419 Sum_probs=56.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh------cc--------chHHHHHHHHHHHhc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v------G~--------~~~~vr~lF~~A~~~ 423 (597)
|..+..-+||+|+||+|||+|+..+|... +.+++++++.+-.+... |. .+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45566678999999999999999998754 45788887654332211 11 122356667777778
Q ss_pred CCeEEEEcCcchhhhh
Q 007591 424 APSIIFIDEIDAVAKS 439 (597)
Q Consensus 424 ~P~ILfIDEIDaL~~~ 439 (597)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 277
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.79 E-value=0.00011 Score=78.00 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=67.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh----hc------------cchHHHHHHHHHHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----VG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~----vG------------~~~~~vr~lF~~A~ 421 (597)
|.+..+-++|+||||||||+||-.++.++ +.++++++..+..+.. .| ..+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45556678899999999999988776543 6677777665433210 01 11222333333345
Q ss_pred hcCCeEEEEcCcchhhhhcC--CccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~--~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
...+++|+||-+.++.+... +...........+.+.+++..|...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56789999999999875421 11000001122344455555555444455666666644
No 278
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.76 E-value=9e-05 Score=70.05 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.++..++|+|+||||||++|+++|..++.+|+..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999999988643
No 279
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.72 E-value=0.00021 Score=70.97 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~s 399 (597)
|.....-++++|+||+|||++|..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45556668999999999999999998764 5677777554
No 280
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.71 E-value=0.00021 Score=71.92 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~s 399 (597)
|.+.+..++++|+||+|||+++..++.+ .+.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5667778999999999999999999654 36677766654
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.69 E-value=0.00026 Score=71.70 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=47.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh------c-----------------------c
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------G-----------------------M 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v------G-----------------------~ 408 (597)
|.+...-++|+||||||||++|..++... +.+.++++..+-...+. | .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 45556679999999999999976554432 56666666442211100 0 0
Q ss_pred --chHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 409 --~~~~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 02233344555555578899999998765
No 282
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.68 E-value=0.00013 Score=75.83 Aligned_cols=113 Identities=23% Similarity=0.388 Sum_probs=66.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcC----------CCeEEee-cchhHHHhhcc-------------chHHHHHHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAE----------VPFISCS-ASEFVELYVGM-------------GASRVRDLFARAK 421 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg----------~pfi~is-~se~~~~~vG~-------------~~~~vr~lF~~A~ 421 (597)
.+++|.||+|+|||+|.+++++... ..+..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5799999999999999999999763 2222222 12332221111 1122345666777
Q ss_pred hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChh--------hhCCCC
Q 007591 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA--------LRRPGR 493 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~a--------LlRpgR 493 (597)
...|.||++||+.. ...+..++..+. .+..+|+++..++. ... |+..+-
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEA 248 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCc
Confidence 78999999999621 122344555443 34577778875432 222 223445
Q ss_pred cceEEEec
Q 007591 494 FDRVVMVE 501 (597)
Q Consensus 494 Fd~~I~v~ 501 (597)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 67777664
No 283
>PF14516 AAA_35: AAA-like domain
Probab=97.68 E-value=0.0022 Score=68.38 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=89.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH-------hh-----------c-------------cch
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-------YV-----------G-------------MGA 410 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~-------~v-----------G-------------~~~ 410 (597)
+.-+.|.||..+|||+|...+...+ +...+++++..+-.. +. + ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4458999999999999999987654 677777776543110 00 0 011
Q ss_pred HHHHHHHHHH---HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC---CCCCCcEEEEeecCCCCCC
Q 007591 411 SRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG---FDSNSAVIVLGATNRSDVL 484 (597)
Q Consensus 411 ~~vr~lF~~A---~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~---~~~~~~VIVIaaTNrpd~L 484 (597)
......|+.. ....|-||+|||+|.+..... .....+..|-...+. ......+.+|.+......+
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~---------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~ 181 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ---------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYI 181 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc---------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccccc
Confidence 2233344432 224688999999999974211 111222222222221 1112233333333222222
Q ss_pred Chhh-hCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 007591 485 DPAL-RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (597)
Q Consensus 485 d~aL-lRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~ 539 (597)
.... .+|-.+...+.++..+.+|...+++.+- ..+.... ++.|-..|.|.
T Consensus 182 ~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGh 232 (331)
T PF14516_consen 182 ILDINQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGH 232 (331)
T ss_pred ccCCCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCC
Confidence 2122 3444455678888889999888887763 3444443 88888888873
No 284
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.68 E-value=3e-05 Score=69.30 Aligned_cols=30 Identities=40% Similarity=0.697 Sum_probs=27.1
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
|+|.||||+||||+|+.+|..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877654
No 285
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00028 Score=67.62 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..++++|+||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45569999999999999999999865
No 286
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=8e-05 Score=71.72 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.8
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeec
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~ 398 (597)
.|+++||||+||||+|+.|+..++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999988764
No 287
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.66 E-value=0.0002 Score=80.41 Aligned_cols=227 Identities=21% Similarity=0.269 Sum_probs=123.7
Q ss_pred cccCChHHHHHHHHHHHH--hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee-cchhHHHhhccc
Q 007591 333 DVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFVELYVGMG 409 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~--l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is-~se~~~~~vG~~ 409 (597)
.|.|++++|..+.-.+-. -+++.. +-..+.--+|||+|.|||||+-+.|.+++-...-++..- ++. -+|.+
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGAS----avGLT 523 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGAS----AVGLT 523 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCcc----cccee
Confidence 478888888887765533 223221 111233457999999999999999999987765555421 111 11111
Q ss_pred hHH-----HHHHHHHHHh---cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHH-----HHHhhcCCCCCCcEEEEe
Q 007591 410 ASR-----VRDLFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ-----LLTEMDGFDSNSAVIVLG 476 (597)
Q Consensus 410 ~~~-----vr~lF~~A~~---~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~-----LL~emd~~~~~~~VIVIa 476 (597)
+.. .+++--++-. ....|.+|||+|.+.... +...++..+|.--. +.+.+ .....|||
T Consensus 524 a~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD----RtSIHEAMEQQSISISKAGIVtsL-----qArctvIA 594 (854)
T KOG0477|consen 524 AYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD----RTSIHEAMEQQSISISKAGIVTSL-----QARCTVIA 594 (854)
T ss_pred EEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccc----cchHHHHHHhcchhhhhhhHHHHH-----Hhhhhhhe
Confidence 111 1111111110 113499999999986432 12233333332111 11112 23457888
Q ss_pred ecCCC-----------C--CCChhhhCCCCcceEEEecC---CCHHHHH--HHHHHHHhcCC------------------
Q 007591 477 ATNRS-----------D--VLDPALRRPGRFDRVVMVET---PDKIGRE--AILKVHVSKKE------------------ 520 (597)
Q Consensus 477 aTNrp-----------d--~Ld~aLlRpgRFd~~I~v~~---Pd~~eR~--~ILk~~l~~~~------------------ 520 (597)
|+|.. + .|-+.+++ |||..-.|.- |-.+|+. -++..|.+...
T Consensus 595 AanPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~ 672 (854)
T KOG0477|consen 595 AANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVE 672 (854)
T ss_pred ecCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccc
Confidence 88862 1 45566777 8985544432 3333333 24444443211
Q ss_pred ------------------CCCCCCCCHHHHHH----------hCCC--CCHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 007591 521 ------------------LPLAKDIDLGDIAS----------MTTG--FTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 521 ------------------l~l~~dvdl~~LA~----------~t~G--~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (597)
.|--.+.|.+.+++ .|.+ .+.+-|+.+++-+...|...-+..|+.+|+..
T Consensus 673 ~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~ 752 (854)
T KOG0477|consen 673 PIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDM 752 (854)
T ss_pred cChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHH
Confidence 01111223333332 1111 25578889999888888888889999999999
Q ss_pred HHHHHh
Q 007591 571 AVERSI 576 (597)
Q Consensus 571 Al~rvi 576 (597)
|+.-.+
T Consensus 753 AI~v~l 758 (854)
T KOG0477|consen 753 AIRVML 758 (854)
T ss_pred HHHHHH
Confidence 987655
No 288
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00086 Score=73.41 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=79.2
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcccc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~ 446 (597)
-++|+||.+||||++++.+.....-.+++++..|........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888765546666555543332211 112222222332244699999998763
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH-------------HHH
Q 007591 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA-------------ILK 513 (597)
Q Consensus 447 ~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~-------------ILk 513 (597)
..+..+..+... ... .+++.+++...-....+-.-+||. ..+.+.+.+..|... .++
T Consensus 108 ----~W~~~lk~l~d~---~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 108 ----DWERALKYLYDR---GNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----hHHHHHHHHHcc---ccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 123444444332 221 344444443222222233346784 478888889998865 466
Q ss_pred HHHhcCCCC
Q 007591 514 VHVSKKELP 522 (597)
Q Consensus 514 ~~l~~~~l~ 522 (597)
.++..-|+|
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 666655554
No 289
>PRK13949 shikimate kinase; Provisional
Probab=97.65 E-value=0.00043 Score=66.78 Aligned_cols=32 Identities=44% Similarity=0.635 Sum_probs=29.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
+.|+|+||||+|||++++.+|+.++.+|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35999999999999999999999999998865
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.64 E-value=0.00077 Score=74.55 Aligned_cols=195 Identities=18% Similarity=0.242 Sum_probs=100.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH-------H--------hhcc-----chHHHHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------L--------YVGM-----GASRVRDLFAR 419 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~-------~--------~vG~-----~~~~vr~lF~~ 419 (597)
..|..++|+|++|+|||+++..+|..+ |..+..+++..+.. . +.+. ....+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 457889999999999999999998765 55666665543311 0 0111 11223444555
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhh--hCCCCcceE
Q 007591 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL--RRPGRFDRV 497 (597)
Q Consensus 420 A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aL--lRpgRFd~~ 497 (597)
+... .+|+||..-.+.. + +..+.++....+-..+...++|+-++...+.++.+- ...-.++ -
T Consensus 173 ~~~~--DvVIIDTAGr~~~----------d---~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~-g 236 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHAL----------E---EDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG-G 236 (437)
T ss_pred hhcC--CEEEEECCCcccc----------h---HHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCC-E
Confidence 5443 6999999855421 1 223333333222223444555665554433333221 1100122 2
Q ss_pred EEecCCCHHHHHH-HHHHHHhcCCCCC-----------CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 007591 498 VMVETPDKIGREA-ILKVHVSKKELPL-----------AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (597)
Q Consensus 498 I~v~~Pd~~eR~~-ILk~~l~~~~l~l-----------~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~---------A~ 556 (597)
+-+-..|...+.- +|.... ..+.|+ -+..+.+.++.+.-| -+|+..|+..|... +.
T Consensus 237 vIlTKlD~~a~~G~~ls~~~-~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~~~~~~~~~~~~ 313 (437)
T PRK00771 237 IIITKLDGTAKGGGALSAVA-ETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEALDEEEEEKDVE 313 (437)
T ss_pred EEEecccCCCcccHHHHHHH-HHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHhhhHHHHHHHHH
Confidence 3344455555543 333322 222232 122356777777654 35777777755332 11
Q ss_pred hcCCccccHHHHHHHHHHHh
Q 007591 557 RLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 557 r~~~~~It~~d~~~Al~rvi 576 (597)
+-.+...+.+||.+-++.+.
T Consensus 314 ~~~~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 314 KMMKGKFTLKDMYKQLEAMN 333 (437)
T ss_pred HHHcCCcCHHHHHHHHHHHH
Confidence 22335678899988777643
No 291
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.63 E-value=0.0004 Score=72.41 Aligned_cols=96 Identities=25% Similarity=0.376 Sum_probs=61.2
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEE-------eecc
Q 007591 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFIS-------CSAS 399 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~-------is~s 399 (597)
.+.|+.-+++.+-..+.. +.++. -+.|.-+=|+|++||||..+++.||+.+ .-||+. +--.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 378999888877776654 54442 2445556689999999999999999965 222221 1111
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
..++.|..+-...+++ .+.....+|.++||+|.|.
T Consensus 157 ~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhcC
Confidence 2233343333333443 4445556699999999986
No 292
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.61 E-value=0.00022 Score=75.89 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=65.5
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecchhHHH-h---hc------------cchHHHHHHHHHHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~se~~~~-~---vG------------~~~~~vr~lF~~A~ 421 (597)
|.+..+-++++||||||||+||-.++.+ .+..+++++..+-.+. + .| ..+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 4555566889999999999999988754 3677777776432221 0 01 11222222222335
Q ss_pred hcCCeEEEEcCcchhhhhcCCccccccc--hHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSN--DEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~--~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
...+++|+||-+-++.+...-....+.. ....+.+.+.+..|.......++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5678899999999987532110000111 112233445454444443345556665543
No 293
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.61 E-value=6.8e-05 Score=73.68 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=59.2
Q ss_pred eEEecCCCChHHHHHHHH-HHh---cCCCeEEeecchhH-HHhhc---cc-------------hHHHHHHHHHHHhcCCe
Q 007591 368 VLLVGLPGTGKTLLAKAV-AGE---AEVPFISCSASEFV-ELYVG---MG-------------ASRVRDLFARAKKEAPS 426 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAI-A~e---lg~pfi~is~se~~-~~~vG---~~-------------~~~vr~lF~~A~~~~P~ 426 (597)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +.... .. ................+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988655 332 3666655 433221 11000 00 00001111111111457
Q ss_pred EEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCC
Q 007591 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd 504 (597)
+|+|||++.+.+.+... .......+ +++.+.. +.++-||.+|..+..||+.+++ ..+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998877531 01112222 3333322 4567888899999999999987 777777776553
No 294
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.56 E-value=0.00028 Score=69.60 Aligned_cols=98 Identities=27% Similarity=0.370 Sum_probs=51.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH----hhccchHHHHHHHHHHH---------hcCCeEEE
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGMGASRVRDLFARAK---------KEAPSIIF 429 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~----~vG~~~~~vr~lF~~A~---------~~~P~ILf 429 (597)
+.++|.||||||||++++.++..+ +..++.+..+.-... ..+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999987643 667776655422111 11111222222222211 12236999
Q ss_pred EcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
|||+-.+. ...+..++..+.. ...++++++=.+.
T Consensus 99 VDEasmv~---------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD---------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B---------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccC---------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 99997664 2344556665543 2446777766654
No 295
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.55 E-value=0.00043 Score=68.59 Aligned_cols=105 Identities=21% Similarity=0.353 Sum_probs=59.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh-----cCCCe-------------EEeecchhHH----HhhccchHHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE-----AEVPF-------------ISCSASEFVE----LYVGMGASRVRDLFARAKK 422 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e-----lg~pf-------------i~is~se~~~----~~vG~~~~~vr~lF~~A~~ 422 (597)
.+.++|.||+|+|||+++|.++.. .|.++ ..++..+-+. .+. ....++..+++.+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~ 103 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKK 103 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccC
Confidence 356899999999999999999863 34322 1111111111 111 112456677776665
Q ss_pred cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCC
Q 007591 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (597)
Q Consensus 423 ~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~L 484 (597)
..|.+|++||.-.- ............++..+.. .+..+|.+|...+.+
T Consensus 104 ~~p~llllDEp~~g----------lD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 104 GEPVLFLLDEIFKG----------TNSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCCeEEEEecccCC----------CCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 57899999997321 1112223334455555532 134666677766543
No 296
>PTZ00202 tuzin; Provisional
Probab=97.55 E-value=0.0063 Score=67.10 Aligned_cols=63 Identities=16% Similarity=0.320 Sum_probs=49.9
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
....+.+|.++...+|..++.... ...|+-+.|+||+|||||+|++.++..++.+.+.++...
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 345689999999999988876422 234557889999999999999999999998877776653
No 297
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.55 E-value=0.00024 Score=70.69 Aligned_cols=116 Identities=19% Similarity=0.167 Sum_probs=66.7
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---C------CCeEEeecchhHH--Hh----h--c---------------c
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---E------VPFISCSASEFVE--LY----V--G---------------M 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g------~pfi~is~se~~~--~~----v--G---------------~ 408 (597)
|.+...-+.|+||||+|||++|..+|... + ..+++++..+-.. .. . + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 55666778999999999999999998753 2 5566666543110 00 0 0 0
Q ss_pred chHHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 409 GASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 409 ~~~~vr~lF~~A----~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
....+...+... ....+++|+||-|..+....... .....++.+.+.+++..|..+....++.||.++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222223322 24567899999999886532110 011234455666666666655444555666555
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00079 Score=73.38 Aligned_cols=131 Identities=12% Similarity=0.168 Sum_probs=73.4
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc-------CCCeEEeecchhHH-------H---------hhccchHHHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEFVE-------L---------YVGMGASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~is~se~~~-------~---------~vG~~~~~vr~lF~~A 420 (597)
.|..++|+||+|+||||++..+|..+ +..+..+++..+.. . ........+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46789999999999999999998754 23444444332211 1 1111223334444333
Q ss_pred HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCC-CcEEEEeecCCCCCCChhhhCC--CCcceE
Q 007591 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRP--GRFDRV 497 (597)
Q Consensus 421 ~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~-~~VIVIaaTNrpd~Ld~aLlRp--gRFd~~ 497 (597)
....+|+||++..... + ...+.++...++..... ..++|+.+|.....+...+.+- ..++ .
T Consensus 253 --~~~DlVLIDTaGr~~~----------~---~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~ 316 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK----------D---FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-T 316 (388)
T ss_pred --CCCCEEEEcCCCCCcc----------C---HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-E
Confidence 3356999999976531 1 11244555555544333 5678888887776666555431 1233 4
Q ss_pred EEecCCCHHHHHH
Q 007591 498 VMVETPDKIGREA 510 (597)
Q Consensus 498 I~v~~Pd~~eR~~ 510 (597)
+-+-..|...+..
T Consensus 317 ~I~TKlDet~~~G 329 (388)
T PRK12723 317 VIFTKLDETTCVG 329 (388)
T ss_pred EEEEeccCCCcch
Confidence 4455556655544
No 299
>PRK07261 topology modulation protein; Provisional
Probab=97.53 E-value=0.00015 Score=69.94 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=29.5
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~s 399 (597)
.++++|+||+||||||+.++..++.|++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 389999999999999999999999998887643
No 300
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.53 E-value=0.00024 Score=65.11 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=29.6
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
++++||||+|||++|+.++..++ ...++..++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999988 55566666655443
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.53 E-value=0.00078 Score=68.28 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=31.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecch
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASE 400 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~se 400 (597)
|.++...+|++||||+|||++|..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 5677788999999999999999876553 366777776543
No 302
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.53 E-value=0.00036 Score=69.86 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=65.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecchhHH--Hhh------c---------------c
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEFVE--LYV------G---------------M 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se~~~--~~v------G---------------~ 408 (597)
|.+...-+.|+||||+|||+++..++... +...++++..+-.. .+. + .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 45666778999999999999999997542 25667776544110 000 0 0
Q ss_pred chHH----HHHHHHHHHhc-CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 409 GASR----VRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 409 ~~~~----vr~lF~~A~~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
.... +..+-...... .+++|+||-+.++....... .....++.+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 0011 12222223344 78899999999886421110 011234455666666666555444455666554
No 303
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.52 E-value=0.00086 Score=68.89 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCC
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~ 391 (597)
....++|.||+|+|||+|++.+++....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4456999999999999999999987643
No 304
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.52 E-value=0.00011 Score=82.84 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=45.4
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-CCCeEEeec
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSA 398 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is~ 398 (597)
.-|+|+.|++++++.+-+.+.. . ...++ ...+-++|.||||+|||+||++||+.+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~---A--a~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRH---A--AQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHH---H--HHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3488999999998877765521 1 11122 234578899999999999999999866 346666644
No 305
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.51 E-value=0.00065 Score=71.84 Aligned_cols=158 Identities=22% Similarity=0.370 Sum_probs=95.4
Q ss_pred ccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHH---hcCCCeEEeecchhHHH-----
Q 007591 334 VAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG---EAEVPFISCSASEFVEL----- 404 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~---elg~pfi~is~se~~~~----- 404 (597)
+.|..+..+.|.+++.. .. ......|++.||.|+|||++...... +.|-.|+.|....++..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~---------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL---------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH---------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 66777777788887764 11 13456799999999999997765533 56777776654322211
Q ss_pred ----------------hhccchHHHHHHHHHHHh-----cCCeEEEEcCcchhhhhcCCccccccchHHHHH-HHHHHHh
Q 007591 405 ----------------YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-LNQLLTE 462 (597)
Q Consensus 405 ----------------~vG~~~~~vr~lF~~A~~-----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~-Ln~LL~e 462 (597)
..|.....+..++...+. ..+.|.++||||...+.. +|+ +..++..
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfDi 164 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHHH
Confidence 122223333334433332 223355577999876422 222 2333332
Q ss_pred hcCCCCCCcEEEEeecCCCCCC---ChhhhCCCCcc-eEEEecCC-CHHHHHHHHHHHH
Q 007591 463 MDGFDSNSAVIVLGATNRSDVL---DPALRRPGRFD-RVVMVETP-DKIGREAILKVHV 516 (597)
Q Consensus 463 md~~~~~~~VIVIaaTNrpd~L---d~aLlRpgRFd-~~I~v~~P-d~~eR~~ILk~~l 516 (597)
-. ....++.||+.|.+.+.+ ...+.+ ||. ++|++.++ ...+..++++..+
T Consensus 165 sq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 165 SQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 22 235678899999887654 566666 895 44666554 6788888888887
No 306
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00028 Score=76.39 Aligned_cols=111 Identities=19% Similarity=0.353 Sum_probs=63.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc----C-CCeEEeecchh-------HHH---hhcc------chHHHHHHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEF-------VEL---YVGM------GASRVRDLFARAK 421 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el----g-~pfi~is~se~-------~~~---~vG~------~~~~vr~lF~~A~ 421 (597)
.....++|+||+|+||||++..+|..+ | ..+..+....+ ... ..|. ....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 445679999999999999999999763 3 24444444333 111 1111 111222223322
Q ss_pred hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC-CCcEEEEeecCCCCCCChhhh
Q 007591 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPALR 489 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~-~~~VIVIaaTNrpd~Ld~aLl 489 (597)
...++|+||.+.... .+..+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 214 -~~~DlVLIDTaG~~~--------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQ--------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred -cCCCEEEEcCCCCCc--------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 345699999985321 11234445555544332 346888888888877765553
No 307
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.50 E-value=0.00063 Score=60.05 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=20.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887765
No 308
>PRK10536 hypothetical protein; Provisional
Probab=97.50 E-value=0.00067 Score=69.89 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
-+++.||+|||||+||.+++-+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999885
No 309
>PRK14532 adenylate kinase; Provisional
Probab=97.50 E-value=0.00041 Score=67.30 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=29.4
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
.++|.||||+|||++|+.+|.+.+.+++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 44555544
No 310
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.46 E-value=0.00049 Score=74.74 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=44.5
Q ss_pred eeEEecCCCChHHHHHHHHHHhcC-----CC-eEEeecc---hh---HHH---------hhccchHHHH---HHHHHHH-
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VP-FISCSAS---EF---VEL---------YVGMGASRVR---DLFARAK- 421 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg-----~p-fi~is~s---e~---~~~---------~vG~~~~~vr---~lF~~A~- 421 (597)
..||+||||+|||+|++.|++... +. ++.+... +. ... +......+++ .+++.|.
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998663 22 2222221 11 111 1112222333 3344443
Q ss_pred ---hcCCeEEEEcCcchhhhhc
Q 007591 422 ---KEAPSIIFIDEIDAVAKSR 440 (597)
Q Consensus 422 ---~~~P~ILfIDEIDaL~~~r 440 (597)
.+...+||||||+.+.+..
T Consensus 251 ~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHcCCCEEEEEEChHHHHHHH
Confidence 2456799999999987644
No 311
>PRK04296 thymidine kinase; Provisional
Probab=97.46 E-value=0.00057 Score=67.07 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=41.0
Q ss_pred eeEEecCCCChHHHHHHHHHHhc---CCCeEEeec--c--h----hHHHhhccc-----hHHHHHHHHHHH--hcCCeEE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA--S--E----FVELYVGMG-----ASRVRDLFARAK--KEAPSII 428 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~--s--e----~~~~~vG~~-----~~~vr~lF~~A~--~~~P~IL 428 (597)
-.|++||||+|||+++..++.++ +..++.+.. . . +.+. .|.. .....+++..+. ...+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999998887764 555555533 1 1 0110 1110 112334444433 3456799
Q ss_pred EEcCcchh
Q 007591 429 FIDEIDAV 436 (597)
Q Consensus 429 fIDEIDaL 436 (597)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999654
No 312
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.45 E-value=0.00032 Score=64.76 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=39.7
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.|.|+.-+++.+-.++.. +.++ .-+.|.-+-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 589999999888887765 4443 12445556689999999999999999974
No 313
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.43 E-value=0.0058 Score=64.03 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=48.7
Q ss_pred CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCCh----------------h
Q 007591 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP----------------A 487 (597)
Q Consensus 424 ~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~----------------a 487 (597)
.+-||||||+|.+.+. + +.+++..+.-+-...++++|.+.++. .|.. .
T Consensus 172 ~~iViiIDdLDR~~~~-----------~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE-----------E----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred ceEEEEEcchhcCCcH-----------H----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 4569999999998532 1 23344444433334677777777642 1111 1
Q ss_pred hhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 007591 488 LRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 488 LlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~ 518 (597)
.+.. -|+..+.+|.|+..+...++...+..
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2220 46778999999999988888877654
No 314
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.42 E-value=0.00066 Score=67.85 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=58.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchhHHHhh--------------------------c---
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYV--------------------------G--- 407 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~~~~~v--------------------------G--- 407 (597)
|.+.+..+|+.||||||||+|+..++.+. |-++++++..+-.+... .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 56677789999999999999999876432 77877776543222100 0
Q ss_pred ----cchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhc
Q 007591 408 ----MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 408 ----~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd 464 (597)
.....+..+.+......+++++||-+..+. .. ....+....+..+...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~------~~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY------DDPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS------SSGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc------CCHHHHHHHHHHHHHHHH
Confidence 011122333344455677899999999982 21 123344556677777664
No 315
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.42 E-value=0.00082 Score=74.76 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=55.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh------cc--------chHHHHHHHHHHHhc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v------G~--------~~~~vr~lF~~A~~~ 423 (597)
|..+..-+||+|+||+|||+|+..++... +.++++++..+-..... |. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45566678999999999999999997754 45778887754433211 11 112345666666777
Q ss_pred CCeEEEEcCcchhhh
Q 007591 424 APSIIFIDEIDAVAK 438 (597)
Q Consensus 424 ~P~ILfIDEIDaL~~ 438 (597)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999854
No 316
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.39 E-value=0.00016 Score=74.39 Aligned_cols=98 Identities=23% Similarity=0.348 Sum_probs=61.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC---eEEee-cchhH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCS-ASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p---fi~is-~se~~ 402 (597)
...+++++.-.....+.+.+++... .+...++++.||+|+|||+++++++.+.... ++.+. ..|+.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 4568888877776666666665542 1224579999999999999999999977433 33332 11121
Q ss_pred HH------h-hccchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007591 403 EL------Y-VGMGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 403 ~~------~-vG~~~~~vr~lF~~A~~~~P~ILfIDEID 434 (597)
-. + .........+++..+.+..|++|+|+||-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 10 0 01234456788889999999999999994
No 317
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.38 E-value=0.0095 Score=63.09 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=70.2
Q ss_pred HHHHHHHHHh--c-CCeEEEEcCcchhhhhcC---CccccccchHHHHHHHHHHHhhcCCCC-CCcEEE--EeecCC---
Q 007591 413 VRDLFARAKK--E-APSIIFIDEIDAVAKSRD---GRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIV--LGATNR--- 480 (597)
Q Consensus 413 vr~lF~~A~~--~-~P~ILfIDEIDaL~~~r~---~~~~~~~~~e~e~~Ln~LL~emd~~~~-~~~VIV--IaaTNr--- 480 (597)
+..++++... . -|.++.||++.++..... ... ...+...-.....|+..+.+-.. ..+.+| +++|..
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~-~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~ 220 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDF-KPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNA 220 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCC-ccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccc
Confidence 3444444433 2 477888999999986521 001 11122333444555554333222 334444 555532
Q ss_pred CC--CCChhhhCCCC------cc-------------eEEEecCCCHHHHHHHHHHHHhcCCCCC--CCCCCHHHHHHhCC
Q 007591 481 SD--VLDPALRRPGR------FD-------------RVVMVETPDKIGREAILKVHVSKKELPL--AKDIDLGDIASMTT 537 (597)
Q Consensus 481 pd--~Ld~aLlRpgR------Fd-------------~~I~v~~Pd~~eR~~ILk~~l~~~~l~l--~~dvdl~~LA~~t~ 537 (597)
+. .++.++....- |. ..|.++..+.+|-..+++.+.+..-+.- .+..-.+.+.-.+.
T Consensus 221 ~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~ 300 (309)
T PF10236_consen 221 PKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN 300 (309)
T ss_pred cCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC
Confidence 22 55555543211 11 2688999999999999999887643321 12222344444444
Q ss_pred CCCHHHHHH
Q 007591 538 GFTGADLAN 546 (597)
Q Consensus 538 G~SgaDL~~ 546 (597)
.+++++..
T Consensus 301 -GNp~el~k 308 (309)
T PF10236_consen 301 -GNPRELEK 308 (309)
T ss_pred -CCHHHhcc
Confidence 48888754
No 318
>PRK06762 hypothetical protein; Provisional
Probab=97.37 E-value=0.00063 Score=64.55 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=32.9
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
|.-++|+|+||+|||++|+.++.+++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 4568999999999999999999998666777777666543
No 319
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00074 Score=68.88 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.1
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...--+-|.||+|||||||.+.+|+-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33445889999999999999999984
No 320
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.35 E-value=0.0014 Score=70.82 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=24.4
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
-.+|+|++|||.-|||||+|.-.+...+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3569999999999999999999887654
No 321
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00079 Score=65.73 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=27.1
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
.|+|.||||+||||+|+.||.. .++.+++-.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 455556544443
No 322
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.33 E-value=0.0044 Score=73.81 Aligned_cols=155 Identities=20% Similarity=0.303 Sum_probs=84.0
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCe--EEeecch-----hHHH----hh----cc-----------c----hHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPF--ISCSASE-----FVEL----YV----GM-----------G----ASRVRD 415 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pf--i~is~se-----~~~~----~v----G~-----------~----~~~vr~ 415 (597)
+-++|+||+|.|||+++..++...+ ++ ++++..+ |... .. +. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999987665 54 4443221 1111 00 00 0 011223
Q ss_pred HHHHHHh-cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC-hhhhCCCC
Q 007591 416 LFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD-PALRRPGR 493 (597)
Q Consensus 416 lF~~A~~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld-~aLlRpgR 493 (597)
++..... ..|.+|+|||+|.+.. ......+..|+..+ . ....+|| ++.....+. ..+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~-----------~~~~~~l~~l~~~~---~-~~~~lv~-~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN-----------PEIHEAMRFFLRHQ---P-ENLTLVV-LSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC-----------hHHHHHHHHHHHhC---C-CCeEEEE-EeCCCCCCchHhHHhc--
Confidence 3333332 5789999999997631 12233444444432 2 2333434 443321221 122111
Q ss_pred cceEEEec----CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH
Q 007591 494 FDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (597)
Q Consensus 494 Fd~~I~v~----~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~ 545 (597)
+..+.+. ..+.+|-.+++...+. .++.++ +...|.+.|.|. +.-+.
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~~-~~~~l~~~t~Gw-p~~l~ 223 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIEAA-ESSRLCDDVEGW-ATALQ 223 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccC---CCCCHH-HHHHHHHHhCCh-HHHHH
Confidence 2244555 6688888888876653 344443 478889999884 44444
No 323
>PRK13948 shikimate kinase; Provisional
Probab=97.33 E-value=0.00077 Score=66.05 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=31.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
+++..|+|.|.+|+|||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998655
No 324
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.33 E-value=0.00043 Score=66.07 Aligned_cols=106 Identities=22% Similarity=0.219 Sum_probs=61.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEeecchh--------HHHhhc-----cchHHHHHHHHHHHhcCCe
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--------VELYVG-----MGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is~se~--------~~~~vG-----~~~~~vr~lF~~A~~~~P~ 426 (597)
..+...+.|.||+|+|||+|.+.+++.... --+.+++.++ ....++ .+..+.+-.+..|....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 455667999999999999999999986521 1122222111 111111 1123445566777778899
Q ss_pred EEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
|+++||-.. +.+....+.+.+++.++.. . +..+|.+|.+.+
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 999999743 2233334555566655531 2 334555666543
No 325
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.32 E-value=0.00031 Score=69.32 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=43.1
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCC----CeEEeec-chhHH---------HhhccchHHHHHHHHHHHhcCCeEEEEcC
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~----pfi~is~-se~~~---------~~vG~~~~~vr~lF~~A~~~~P~ILfIDE 432 (597)
-+++.||+|+|||+++++++++... .++.+.. .++.. ..++.......+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 2222211 11110 01122223355667777778899999999
Q ss_pred c
Q 007591 433 I 433 (597)
Q Consensus 433 I 433 (597)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 326
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.31 E-value=0.0012 Score=68.68 Aligned_cols=74 Identities=24% Similarity=0.454 Sum_probs=48.7
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHH------hcCCCeEEeecchhHHH-----hhccchHHHHHHHHHHH--------h
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAG------EAEVPFISCSASEFVEL-----YVGMGASRVRDLFARAK--------K 422 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~------elg~pfi~is~se~~~~-----~vG~~~~~vr~lF~~A~--------~ 422 (597)
.+....+||.||.|.||+.||+.|-. .+.-+|+.++|..+... ..| .+...|.-|+ .
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrs 280 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRS 280 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhcc
Confidence 34445699999999999999999854 45789999999866321 111 1222222221 1
Q ss_pred cCCeEEEEcCcchhhhh
Q 007591 423 EAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 423 ~~P~ILfIDEIDaL~~~ 439 (597)
....+||+|||..|+..
T Consensus 281 adggmlfldeigelgad 297 (531)
T COG4650 281 ADGGMLFLDEIGELGAD 297 (531)
T ss_pred CCCceEehHhhhhcCcc
Confidence 12349999999888644
No 327
>PRK14974 cell division protein FtsY; Provisional
Probab=97.31 E-value=0.0015 Score=69.91 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=44.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH-------HHh---hc----------cchHHHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG----------MGASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~-------~~~---vG----------~~~~~vr~lF~~A 420 (597)
.|.-++|+||||+|||+++..+|..+ +..+..+++..+. ..+ .| .....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888887754 5555555544221 100 01 0112234444555
Q ss_pred HhcCCeEEEEcCcchh
Q 007591 421 KKEAPSIIFIDEIDAV 436 (597)
Q Consensus 421 ~~~~P~ILfIDEIDaL 436 (597)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555669999998654
No 328
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.31 E-value=0.00012 Score=63.97 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=23.8
Q ss_pred CcceeeehHHHHHHHHcCCccEEEEeCcEEE
Q 007591 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIM 208 (597)
Q Consensus 178 ~~~~~~~y~~f~~~~~~~~v~~v~~~~~~~~ 208 (597)
....+++||+|+++|++|+|++|.+.++.+.
T Consensus 25 ~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 25 SQTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp -SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred CCCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 3466899999999999999999999877666
No 329
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.31 E-value=0.00054 Score=73.45 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=46.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCC----CeEEee-cchhHH---------HhhccchHHHHHHHHHHHhcCCeEEEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCS-ASEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~----pfi~is-~se~~~---------~~vG~~~~~vr~lF~~A~~~~P~ILfI 430 (597)
...+|+.||+|+||||+++++.++... .++.+. ..++.. ..+|.......+.+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 346899999999999999999986642 233321 112110 012222234566777788889999999
Q ss_pred cCcc
Q 007591 431 DEID 434 (597)
Q Consensus 431 DEID 434 (597)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9993
No 330
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.28 E-value=0.00044 Score=64.23 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=31.3
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG 407 (597)
+++|+|+||+|||++|+.+|..++.+++..+ ++.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3899999999999999999999999988554 44444333
No 331
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.28 E-value=0.001 Score=68.15 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=29.3
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeec
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~ 398 (597)
|..+..-++|.||||+|||+++..++..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45566678999999999999999887653 666666654
No 332
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.28 E-value=0.005 Score=66.25 Aligned_cols=160 Identities=17% Similarity=0.227 Sum_probs=91.0
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH-------
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL------- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~------- 404 (597)
..+.+.+.+...|..++-. + ....|..+.|+|-.|||||.+.+.+.++++.+.+.++|-+....
T Consensus 6 ~~v~~Re~qi~~L~~Llg~--~-------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN--N-------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCC--C-------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 3567777777777766531 1 12467788999999999999999999999999999887654321
Q ss_pred ---h---------hccchHHHH---HHHHH--HHhc--CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC
Q 007591 405 ---Y---------VGMGASRVR---DLFAR--AKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 405 ---~---------vG~~~~~vr---~lF~~--A~~~--~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~ 465 (597)
. +......+. .+|.+ +... ..-.|++|.+|.+... + ...+..++..=+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~-~-----------a~ll~~l~~L~e- 143 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM-D-----------AILLQCLFRLYE- 143 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc-c-----------hHHHHHHHHHHH-
Confidence 0 011112222 22333 2222 2447889999998621 1 123333333221
Q ss_pred CCCCCcEEEEeecCCCCCCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHH
Q 007591 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFD-RVVMVETPDKIGREAILKVH 515 (597)
Q Consensus 466 ~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~ 515 (597)
.-....+.+|...-..+ +--+.+-|-++ .++++|.|+.++...|+..-
T Consensus 144 l~~~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 144 LLNEPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HhCCCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11122333333322111 11122233443 46789999999999888653
No 333
>PRK13947 shikimate kinase; Provisional
Probab=97.27 E-value=0.00025 Score=67.49 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.6
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
+|+|.|+||+|||++|+.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 334
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.26 E-value=0.0004 Score=67.69 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=46.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecc-hhHH---H----------hhccchHHHHHHHHHHHhcCCe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFVE---L----------YVGMGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~s-e~~~---~----------~vG~~~~~vr~lF~~A~~~~P~ 426 (597)
+....++|.||+|+|||++++++++... ...+.+... ++.. . ..+.....+.+++..+.+..|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3456799999999999999999998753 122222111 1100 0 0011223467778888888999
Q ss_pred EEEEcCcc
Q 007591 427 IIFIDEID 434 (597)
Q Consensus 427 ILfIDEID 434 (597)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999993
No 335
>PRK09354 recA recombinase A; Provisional
Probab=97.26 E-value=0.0012 Score=70.85 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=50.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecchhHHH-h---hc------------cchHHHHHHHHHHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL-Y---VG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~se~~~~-~---vG------------~~~~~vr~lF~~A~ 421 (597)
|.+..+-++|+||||||||+||-.++.+ .|-..++++..+-.+. + .| ..+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4555667889999999999999987654 3677777766542221 0 01 11122222222334
Q ss_pred hcCCeEEEEcCcchhhh
Q 007591 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~ 438 (597)
...+.+|+||-+-+|.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999999875
No 336
>PRK05973 replicative DNA helicase; Provisional
Probab=97.26 E-value=0.0018 Score=66.08 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=29.9
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~s 399 (597)
|..+..-++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45566678999999999999998887644 7677666644
No 337
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00056 Score=64.78 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=29.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
..++|++|-||||||+++..+|...+.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 346999999999999999999999999998774
No 338
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.24 E-value=0.00079 Score=65.32 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=29.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.++.|.|++|+|||++.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998764
No 339
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.24 E-value=0.0015 Score=66.48 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=28.9
Q ss_pred eEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
|+|+|+||+|||++|+.++..+ +.+++.++...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 6899999999999999999876 5677777765453
No 340
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.0018 Score=65.49 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=46.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc--------CCCeEEee-cchhHHHhhcc-------------chHHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCS-ASEFVELYVGM-------------GASRVRDLFARAKKE 423 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el--------g~pfi~is-~se~~~~~vG~-------------~~~~vr~lF~~A~~~ 423 (597)
.+.|+.||||||||++.|-+|+-+ +..+..++ .++......|. ..-+-..++...+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999854 22333333 23333322222 122335567777889
Q ss_pred CCeEEEEcCcch
Q 007591 424 APSIIFIDEIDA 435 (597)
Q Consensus 424 ~P~ILfIDEIDa 435 (597)
+|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999954
No 341
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.22 E-value=0.0032 Score=62.98 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=28.9
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeec
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~ 398 (597)
|..+...++++||||+|||+++..++.+ .+-+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5667778999999999999999987643 2555666654
No 342
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.22 E-value=0.00029 Score=74.24 Aligned_cols=70 Identities=26% Similarity=0.362 Sum_probs=47.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcC-----CCeEEeec-chhH-------HHhhccchHHHHHHHHHHHhcCCeEEEEc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA-SEFV-------ELYVGMGASRVRDLFARAKKEAPSIIFID 431 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg-----~pfi~is~-se~~-------~~~vG~~~~~vr~lF~~A~~~~P~ILfID 431 (597)
.+++|++||+|+|||++++++++... ..++.+.- .++. ............+++..+.+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 45799999999999999999998752 22333311 1111 11111222256788899999999999999
Q ss_pred Ccc
Q 007591 432 EID 434 (597)
Q Consensus 432 EID 434 (597)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 984
No 343
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.21 E-value=0.0017 Score=79.36 Aligned_cols=136 Identities=29% Similarity=0.380 Sum_probs=90.6
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch---hHHHhh----cc--chHHHHH-HHHHHHhcCCeEEEEcCcc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE---FVELYV----GM--GASRVRD-LFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se---~~~~~v----G~--~~~~vr~-lF~~A~~~~P~ILfIDEID 434 (597)
.+++||.|.||+|||.|..|+|++.|-.++.++.++ +++.+- ++ ++-+.++ -|-.|.+.. .-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhh
Confidence 456999999999999999999999999999998764 333321 11 2222221 233333332 378999996
Q ss_pred hhhhhcCCccccccchHHHHHHHHHHH--------hhc-CCCCCCcEEEEeecCCC------CCCChhhhCCCCcceEEE
Q 007591 435 AVAKSRDGRFRIVSNDEREQTLNQLLT--------EMD-GFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVM 499 (597)
Q Consensus 435 aL~~~r~~~~~~~~~~e~e~~Ln~LL~--------emd-~~~~~~~VIVIaaTNrp------d~Ld~aLlRpgRFd~~I~ 499 (597)
-...+- -.-+|..|. ++| .|..+.++.|+||-|.. ..|+..++. ||. +|.
T Consensus 1622 LaSQSV------------lEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1622 LASQSV------------LEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhHHHH------------HHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 432111 122233332 232 24456788999888865 478999998 997 889
Q ss_pred ecCCCHHHHHHHHHHHH
Q 007591 500 VETPDKIGREAILKVHV 516 (597)
Q Consensus 500 v~~Pd~~eR~~ILk~~l 516 (597)
++..+.++...|.....
T Consensus 1687 ~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1687 MDGLTTDDITHIANKMY 1703 (4600)
T ss_pred ecccccchHHHHHHhhC
Confidence 99998888888877665
No 344
>PRK03839 putative kinase; Provisional
Probab=97.21 E-value=0.00027 Score=68.18 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=28.2
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997754
No 345
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.21 E-value=0.0013 Score=66.07 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~s 399 (597)
|..+..-++|.|+||+|||+++..++..+ +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 56667779999999999999998886643 7777777643
No 346
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.19 E-value=0.0035 Score=62.66 Aligned_cols=98 Identities=21% Similarity=0.203 Sum_probs=57.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh------c--------c-------chH----H
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------G--------M-------GAS----R 412 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v------G--------~-------~~~----~ 412 (597)
|.++...+++.|+||+|||++|..++.+. +-+.++++..+-.+... | . ... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 55566778999999999999999887542 66777766543322110 0 0 000 0
Q ss_pred HHH----HHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhc
Q 007591 413 VRD----LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 413 vr~----lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd 464 (597)
+.. +...+.+..++.++||-+..+..-. ....+..+.+..++..+.
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~------~~~~~~r~~l~~l~~~lk 141 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETLF------DDDAERRTELFRFYSSLR 141 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhhc------CCHHHHHHHHHHHHHHHH
Confidence 111 1222344567899999988773211 122334556667777765
No 347
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.19 E-value=0.0051 Score=61.04 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.9
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pf 393 (597)
+.-+++.|+||+|||++|+.+|.+++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999998765
No 348
>PLN02674 adenylate kinase
Probab=97.18 E-value=0.0017 Score=66.47 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=31.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
+++..++|.||||+||+|+|+.+|...+++.++ ..+++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his--~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLA--TGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEc--hhHHHHH
Confidence 445679999999999999999999999866554 4555443
No 349
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.18 E-value=0.0032 Score=63.08 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 36799999999999999999983
No 350
>PRK13946 shikimate kinase; Provisional
Probab=97.17 E-value=0.00099 Score=64.84 Aligned_cols=34 Identities=35% Similarity=0.624 Sum_probs=30.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.++.|+|.|++|+|||++++.+|..+|.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4567999999999999999999999999998765
No 351
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.17 E-value=0.00039 Score=66.94 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=32.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+-++|.|+||+|||++|+.++.+++.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 46899999999999999999999988888776665544
No 352
>PRK00625 shikimate kinase; Provisional
Probab=97.16 E-value=0.00036 Score=67.78 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=29.0
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
+|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998775
No 353
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.16 E-value=0.0011 Score=60.90 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=28.1
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
+.|.|+||+|||++|+.+|.+++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998876
No 354
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.16 E-value=0.0012 Score=68.40 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=58.7
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC---CCeEEee-cchhHHH
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEFVEL 404 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is-~se~~~~ 404 (597)
.+++++.-.++..+.|++++. .....+++.||+|+|||++++++..+.. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 457777666666666655543 1122489999999999999999987663 2344432 1111100
Q ss_pred -----hhc-cchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 405 -----YVG-MGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 405 -----~vG-~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
.+. .......+++..+.+..|++|+|+|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 011 1112356777788888999999999943
No 355
>PRK04328 hypothetical protein; Provisional
Probab=97.15 E-value=0.004 Score=63.73 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeec
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~ 398 (597)
|.++...+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4566778999999999999999876543 3566666654
No 356
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.15 E-value=0.0029 Score=65.20 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~s 399 (597)
|.++..-++++||||||||++|-.+|.+ .|-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5566777999999999999999988664 25566666543
No 357
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.001 Score=65.81 Aligned_cols=131 Identities=24% Similarity=0.369 Sum_probs=67.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh-------HHHh---hc----------cchHHHHHHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-------VELY---VG----------MGASRVRDLFARAK 421 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~-------~~~~---vG----------~~~~~vr~lF~~A~ 421 (597)
|+-++|+||+|+|||+.+-.+|..+ +..+-.+++..+ ...| .+ ......++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5678999999999999888887754 444333333222 1111 11 11223455566665
Q ss_pred hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhh--CCCCcceEEE
Q 007591 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR--RPGRFDRVVM 499 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLl--RpgRFd~~I~ 499 (597)
...-.+|+||-..... .+.+.-..+..++..+ .+....+|+.++...+.++.... +...++. +-
T Consensus 81 ~~~~D~vlIDT~Gr~~----------~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~-lI 146 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP----------RDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQALAFYEAFGIDG-LI 146 (196)
T ss_dssp HTTSSEEEEEE-SSSS----------THHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCE-EE
T ss_pred hcCCCEEEEecCCcch----------hhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHHHHHHhhcccCce-EE
Confidence 5555699998763321 1222233344444444 33445666666665555553332 2122343 33
Q ss_pred ecCCCHHHHH
Q 007591 500 VETPDKIGRE 509 (597)
Q Consensus 500 v~~Pd~~eR~ 509 (597)
+-..|...+.
T Consensus 147 lTKlDet~~~ 156 (196)
T PF00448_consen 147 LTKLDETARL 156 (196)
T ss_dssp EESTTSSSTT
T ss_pred EEeecCCCCc
Confidence 5555554444
No 358
>PRK10867 signal recognition particle protein; Provisional
Probab=97.15 E-value=0.0071 Score=66.91 Aligned_cols=199 Identities=19% Similarity=0.292 Sum_probs=99.4
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchhHHH----------------hh---c-cchHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL----------------YV---G-MGASRVRDLF 417 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~~~~----------------~v---G-~~~~~vr~lF 417 (597)
..+|.-++++||+|+||||++..+|..+ |..+..+++..+... +. + .......+.+
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457789999999999999777777643 666666766533211 00 0 1122234455
Q ss_pred HHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCCh--hhhCCCCcc
Q 007591 418 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP--ALRRPGRFD 495 (597)
Q Consensus 418 ~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~--aLlRpgRFd 495 (597)
..++.....+|+||=.-.+.. ++. .+.++....+...+..-++|+-++...+.++. .+...-.++
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~----------d~~---lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~ 243 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHI----------DEE---LMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLT 243 (433)
T ss_pred HHHHhcCCCEEEEeCCCCccc----------CHH---HHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCC
Confidence 566666677899887754321 111 22222222222233333444444332222221 112111223
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCC-----C------CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------H
Q 007591 496 RVVMVETPDKIGREAILKVHVSKKELPL-----A------KDIDLGDIASMTTGFTGADLANLVNEAALL---------A 555 (597)
Q Consensus 496 ~~I~v~~Pd~~eR~~ILk~~l~~~~l~l-----~------~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~---------A 555 (597)
-+-+-..|...+...+-......++|+ . +..+.+.++.+.-| -+|+..|+..|... +
T Consensus 244 -giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilg--mgD~~~l~e~~~~~~~~~~~~~~~ 320 (433)
T PRK10867 244 -GVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILG--MGDVLSLIEKAQEVVDEEKAEKLA 320 (433)
T ss_pred -EEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhC--CCChHHHHHHHHHhhCHHHHHHHH
Confidence 234444554454433333322223331 1 12346677777754 35777777765432 1
Q ss_pred HhcCCccccHHHHHHHHHHHh
Q 007591 556 GRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi 576 (597)
.+-.+...+.+||.+-++...
T Consensus 321 ~~~~~g~f~l~d~~~q~~~~~ 341 (433)
T PRK10867 321 KKLKKGKFDLEDFLEQLQQMK 341 (433)
T ss_pred HHHHhCCCCHHHHHHHHHHHH
Confidence 111234578888888777643
No 359
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.14 E-value=0.00051 Score=73.43 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=48.3
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEe-ecchhHH--------Hh-----hccchHHHHHHHHHHHhcCCe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISC-SASEFVE--------LY-----VGMGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~i-s~se~~~--------~~-----vG~~~~~vr~lF~~A~~~~P~ 426 (597)
+..+++|++||+|+|||+++++++.+..- .++.+ +..++.- .. .+...-...++++.+.+..|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 34567999999999999999999987632 22222 1111110 00 111223467889999999999
Q ss_pred EEEEcCcc
Q 007591 427 IIFIDEID 434 (597)
Q Consensus 427 ILfIDEID 434 (597)
+|++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999984
No 360
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.12 E-value=0.0004 Score=66.77 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=28.3
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
|+|+||||+|||++|+.+|.+++++. ++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHHH
Confidence 78999999999999999999998654 555555543
No 361
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.11 E-value=0.001 Score=75.69 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=25.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..++...+|+.||+|||||+|.||+|+-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4567788999999999999999999984
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0028 Score=69.11 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=59.9
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH----HH---h---------hccchHHHHHHHHHHHh-c
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----EL---Y---------VGMGASRVRDLFARAKK-E 423 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~----~~---~---------vG~~~~~vr~lF~~A~~-~ 423 (597)
.|+.++|.||+|+||||++..+|.++ +..+..+++..+. +. | +......+.+.+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46789999999999999999999865 4444444443221 11 1 12234455666665553 2
Q ss_pred CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 424 ~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
...+||||-...... ....+.++...++...+...++|+.+|...
T Consensus 320 ~~DvVLIDTaGRs~k-------------d~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 320 RVDYILIDTAGKNYR-------------ASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred CCCEEEEeCccccCc-------------CHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 346899887644321 123344555555444444445666555443
No 363
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.08 E-value=0.003 Score=61.18 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=55.6
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh-----------------hccchHHHHHHHHHHHhcCCeEEEE
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY-----------------VGMGASRVRDLFARAKKEAPSIIFI 430 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~-----------------vG~~~~~vr~lF~~A~~~~P~ILfI 430 (597)
+|+.|++|+|||++|..++.+.+.+.+++.-..-.+.- ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998877777777543221110 0112223344332222 4669999
Q ss_pred cCcchhhhhcCCcccccc--chHHHHHHHHHHHhhcC
Q 007591 431 DEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDG 465 (597)
Q Consensus 431 DEIDaL~~~r~~~~~~~~--~~e~e~~Ln~LL~emd~ 465 (597)
|-+..+....-.. ... .+...+.+..|+..+..
T Consensus 80 Dclt~~~~n~l~~--~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFA--DLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCC--ccccchhHHHHHHHHHHHHHHc
Confidence 9999887554211 000 02234455667776653
No 364
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.08 E-value=0.00051 Score=66.39 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.3
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+++|+|+||+||||+++.++.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999877
No 365
>PRK14531 adenylate kinase; Provisional
Probab=97.06 E-value=0.00055 Score=66.50 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=29.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
..++++||||+|||++++.+|..+|+++++ ..+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHHH
Confidence 459999999999999999999999988765 444443
No 366
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.06 E-value=0.0048 Score=59.78 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=55.7
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchH--------------------HHHHHHHHHHhcCCe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS--------------------RVRDLFARAKKEAPS 426 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~--------------------~vr~lF~~A~~~~P~ 426 (597)
.+|+.||||+|||++|..++.+++.+++++.-...... +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998888777764432111 1111 233333221 12356
Q ss_pred EEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC
Q 007591 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~ 465 (597)
+|+||-+..+....-.. ...+.....+.+++..+..
T Consensus 79 ~VlID~Lt~~~~n~l~~---~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFE---EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEEehhHHHHHHHHhcc---cchHHHHHHHHHHHHHHHc
Confidence 89999999886543210 0002234456667766654
No 367
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.06 E-value=0.00063 Score=73.04 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=48.8
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEee-cchhHH-------H-----hhccchHHHHHHHHHHHhcCCe
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE-------L-----YVGMGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is-~se~~~-------~-----~vG~~~~~vr~lF~~A~~~~P~ 426 (597)
.+..+++|+.||+|+|||+++++++++... .++.+. ..++.- . ..+...-...+++..+.+..|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 445678999999999999999999987632 222221 111100 0 0112223466888889999999
Q ss_pred EEEEcCcc
Q 007591 427 IIFIDEID 434 (597)
Q Consensus 427 ILfIDEID 434 (597)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999984
No 368
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.05 E-value=0.0038 Score=70.05 Aligned_cols=78 Identities=26% Similarity=0.272 Sum_probs=55.5
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh------cc----------------------c
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM----------------------G 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v------G~----------------------~ 409 (597)
|..+...+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. |. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 45666779999999999999999987754 66777776654433211 10 1
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 007591 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 410 ~~~vr~lF~~A~~~~P~ILfIDEIDaL~~ 438 (597)
+..+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 34456666677777899999999998754
No 369
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.05 E-value=0.0026 Score=74.60 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecchhHHH----hhc------------cchHHHHHHHHHHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL----YVG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~se~~~~----~vG------------~~~~~vr~lF~~A~ 421 (597)
|.....-++|+||||||||+|+..++.+ .|-.+++++..+-... -.| ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4556677899999999999999765443 3666677765542220 001 11111222222234
Q ss_pred hcCCeEEEEcCcchhhhhcCCcccccc--chHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 422 KEAPSIIFIDEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~~~~~~~~--~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
...+.+|+||-|.++....+-....+. .....+.++++|..|..+-...++.+|.+.
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 567899999999999852211001111 123344445666655555445566666554
No 370
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.04 E-value=0.0087 Score=58.32 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=63.7
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC-------------CeEEeecchhHHHhh----------c--cchHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------PFISCSASEFVELYV----------G--MGASRVRDL 416 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------------pfi~is~se~~~~~v----------G--~~~~~vr~l 416 (597)
..+..-+.|.||.|+|||||.++++...|- ++.++.-.++...+- . .+..+.+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 345566889999999999999999743221 122221111222110 0 011234555
Q ss_pred HHHHHhcC--CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCc
Q 007591 417 FARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (597)
Q Consensus 417 F~~A~~~~--P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRF 494 (597)
+..|.... |.++++||--.- .+.+..+.+.+++..+.. .+..||.+|..++.+ + ..
T Consensus 98 laral~~~~~p~llLlDEPt~~-----------LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~~~-----~--~~ 155 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTG-----------LHQQDINQLLEVIKGLID----LGNTVILIEHNLDVL-----S--SA 155 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-----H--hC
Confidence 66666677 899999997432 222333444444444421 233555567655422 2 35
Q ss_pred ceEEEecC
Q 007591 495 DRVVMVET 502 (597)
Q Consensus 495 d~~I~v~~ 502 (597)
|+++.+..
T Consensus 156 d~i~~l~~ 163 (176)
T cd03238 156 DWIIDFGP 163 (176)
T ss_pred CEEEEECC
Confidence 56666643
No 371
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.03 E-value=0.0023 Score=67.94 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh---------cCCCeEEeecchh--HHHh------hccc--------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---------AEVPFISCSASEF--VELY------VGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e---------lg~pfi~is~se~--~~~~------vG~~-------------- 409 (597)
|.....-+.|+||||+|||.|+..+|-. .+...++++..+- .+.. .|..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 4556667889999999999999887632 2346667665431 0100 0110
Q ss_pred -h----HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 410 -A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 -~----~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
. ..+..+........+.+|+||-|-++.+..-.+ .+...++.+.+.+++..|..+....++.||.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0 111222222334568899999999887542111 112233444566666666555445556666554
No 372
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.02 E-value=0.0097 Score=60.91 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=74.4
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEeecchhHHH---h-----hcc--c----hHH-------HHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFVEL---Y-----VGM--G----ASR-------VRDLFAR 419 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is~se~~~~---~-----vG~--~----~~~-------vr~lF~~ 419 (597)
..|-.+.+.|++|||||++++.+...+.- ..+.+-.+..... | +.. . +.. +.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34556999999999999999999876532 2222211111111 1 000 0 001 1111111
Q ss_pred HHh---cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcce
Q 007591 420 AKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (597)
Q Consensus 420 A~~---~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~ 496 (597)
... ..+++|+||++-. .....+.+.+++.. ..+-++-+|..+.....|++.++. -.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~-------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD-------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hcccCCCCCeEEEEeCCCC-------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceE
Confidence 111 2367999999732 01123455666653 224567888888888999999866 6676
Q ss_pred EEEecCCCHHHHHHHHHHH
Q 007591 497 VVMVETPDKIGREAILKVH 515 (597)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~ 515 (597)
.+-+. -+..+..-|++..
T Consensus 152 ~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEec-CcHHHHHHHHHhc
Confidence 66664 4666665555544
No 373
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.02 E-value=0.0056 Score=68.70 Aligned_cols=225 Identities=24% Similarity=0.250 Sum_probs=125.9
Q ss_pred cccCChHHHHHHHHHHHH-----hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe-ecchh-----
Q 007591 333 DVAGVDEAKEELEEIVEF-----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEF----- 401 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-----l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i-s~se~----- 401 (597)
.|.|++.+|+.+.-++-. |.+-. ..+.--+|||.|.|.|-|+-|.|.+.+-+-.-+-.. .++.=
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGs-----hlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTA 376 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGS-----HLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTA 376 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCc-----eeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCcccee
Confidence 489999999998876643 22211 133445799999999999999999987652221110 01100
Q ss_pred -HHHhhccchHHHHH-HHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh----hc--CC--CCCCc
Q 007591 402 -VELYVGMGASRVRD-LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE----MD--GF--DSNSA 471 (597)
Q Consensus 402 -~~~~vG~~~~~vr~-lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e----md--~~--~~~~~ 471 (597)
+..-...+++++.. .+-.|. ..|++|||+|.+..- .+-.+.+...+ +. |+ .-+.+
T Consensus 377 AVTtD~eTGERRLEAGAMVLAD---RGVVCIDEFDKMsDi------------DRvAIHEVMEQqtVTIaKAGIHasLNAR 441 (818)
T KOG0479|consen 377 AVTTDQETGERRLEAGAMVLAD---RGVVCIDEFDKMSDI------------DRVAIHEVMEQQTVTIAKAGIHASLNAR 441 (818)
T ss_pred EEeeccccchhhhhcCceEEcc---CceEEehhcccccch------------hHHHHHHHHhcceEEeEeccchhhhccc
Confidence 00011223444321 111222 349999999987521 12223333222 10 11 12567
Q ss_pred EEEEeecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHH----HHHHHHHHhc-C----CCCCCC---
Q 007591 472 VIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGR----EAILKVHVSK-K----ELPLAK--- 525 (597)
Q Consensus 472 VIVIaaTNrpd-------------~Ld~aLlRpgRFd~~I~v-~~Pd~~eR----~~ILk~~l~~-~----~l~l~~--- 525 (597)
.-|+||.|... .|+..|++ |||..+.+ +--|.+-- ...|+.|--. . |-++..
T Consensus 442 CSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~ 519 (818)
T KOG0479|consen 442 CSVLAAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNG 519 (818)
T ss_pred eeeeeecCccccccCCCCChhhccCCcHHHHh--hhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCc
Confidence 88999998742 46788888 99965543 33222211 1344444110 0 000000
Q ss_pred ----------------------------------------------------------CCCHHHHHH-------------
Q 007591 526 ----------------------------------------------------------DIDLGDIAS------------- 534 (597)
Q Consensus 526 ----------------------------------------------------------dvdl~~LA~------------- 534 (597)
+...+.||+
T Consensus 520 v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d 599 (818)
T KOG0479|consen 520 VEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKD 599 (818)
T ss_pred ccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccc
Confidence 000111221
Q ss_pred --hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch
Q 007591 535 --MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI 579 (597)
Q Consensus 535 --~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~ 579 (597)
+|...+.+.|+.|++-|-..|..+-...|+.+|-+.|++-+...+
T Consensus 600 ~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA~ 646 (818)
T KOG0479|consen 600 QERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFAL 646 (818)
T ss_pred cccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHHH
Confidence 334457789999999999999888889999999998887665444
No 374
>PHA02624 large T antigen; Provisional
Probab=97.02 E-value=0.0018 Score=73.60 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=67.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r 440 (597)
|.+..+.+||+||||||||+++++|++.++-..+.++++.-... |...-...-.+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 44555689999999999999999999999655677875532111 222111112378888875322100
Q ss_pred CC-ccccccchHHHHHHHHHHHhhcCC-CC------CC-----cEEEEeecCCCCCCChhhhCCCCcceEEEecC
Q 007591 441 DG-RFRIVSNDEREQTLNQLLTEMDGF-DS------NS-----AVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 441 ~~-~~~~~~~~e~e~~Ln~LL~emd~~-~~------~~-----~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~ 502 (597)
.. ..+.+.+ -+..|-..+||. .- .. --.+|.|||. ..|+..+.- ||..++.|..
T Consensus 495 ~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 00 0000000 113344555654 10 00 0123446774 567777776 8988888754
No 375
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.02 E-value=0.0018 Score=68.61 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=65.3
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecchhH------HHh--hccch-------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEFV------ELY--VGMGA------------- 410 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se~~------~~~--vG~~~------------- 410 (597)
|.+...-++|+||||+|||+++..+|-.+ +...++++..+-+ +.. .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 45666778899999999999999998653 3366777654410 000 01000
Q ss_pred ------HHHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 411 ------SRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 411 ------~~vr~lF~~A~~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
..+..+...... ..+++|+||=|-++....-.. .+...++.+.+.+++..|..+....++.+|.++.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122222223 456799999999986542111 1122334555666666555444445566665654
No 376
>PHA02774 E1; Provisional
Probab=97.01 E-value=0.0024 Score=72.34 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=27.6
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEE-eec
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSA 398 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~-is~ 398 (597)
.++++|+||||||||++|.+|++.++-..+. ++.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 4589999999999999999999998644433 443
No 377
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.01 E-value=0.00092 Score=70.58 Aligned_cols=74 Identities=22% Similarity=0.410 Sum_probs=48.5
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEee-cchhHH-------Hh-----hccchHHHHHHHHHHHhcCC
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE-------LY-----VGMGASRVRDLFARAKKEAP 425 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is-~se~~~-------~~-----vG~~~~~vr~lF~~A~~~~P 425 (597)
-.+...++++.||+|+|||++++++++.... ..+.+. ..++.- .. .+...-.+.+++..+.+..|
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 3456678999999999999999999987631 122221 111100 00 01112345678888888999
Q ss_pred eEEEEcCcc
Q 007591 426 SIIFIDEID 434 (597)
Q Consensus 426 ~ILfIDEID 434 (597)
.+|++||+-
T Consensus 220 d~ii~gE~r 228 (308)
T TIGR02788 220 DRIILGELR 228 (308)
T ss_pred CeEEEeccC
Confidence 999999994
No 378
>PRK06217 hypothetical protein; Validated
Probab=97.01 E-value=0.00061 Score=66.12 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.3
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.|+|.|+||+|||++|++++..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 379
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.99 E-value=0.0023 Score=67.62 Aligned_cols=36 Identities=36% Similarity=0.648 Sum_probs=32.0
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
..++..|+|+|+||+|||++++.+|.++|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456778999999999999999999999999999543
No 380
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.98 E-value=0.0033 Score=58.86 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=43.9
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEeecc---hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSAS---EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is~s---e~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
..+...+.|.||+|+|||+|++++++.... --+.+++. .++.. ... ..+-+-.+..|....|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~-G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSG-GEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCH-HHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 345567899999999999999999997521 00111110 00000 111 12334445666677889999999753
No 381
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.98 E-value=0.0024 Score=67.15 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=64.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecch-h-----HHH--hhccch-------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F-----VEL--YVGMGA------------- 410 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se-~-----~~~--~vG~~~------------- 410 (597)
|.+...-++++||||+|||+++-.+|-.+ +-..++++..+ | ... ..|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 45556668899999999999999998653 23677776554 1 000 001100
Q ss_pred ---H---HHHHHHHHHHhc--CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 411 ---S---RVRDLFARAKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 411 ---~---~vr~lF~~A~~~--~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
. .+..+.+..... .+++|+||-|-++....-.+ .+...++.+.+++++..|..+....++.|+.+..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0 112222333333 36799999998876442111 1122334455666666555444455566665543
No 382
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.98 E-value=0.00063 Score=65.77 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=28.7
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
|+|.||||+|||++|+.+|.+++++++. ..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHHH
Confidence 7999999999999999999998877655 4455443
No 383
>PRK13764 ATPase; Provisional
Probab=96.98 E-value=0.0011 Score=75.98 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=42.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcC---CCeEEee-cchh-----HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEF-----VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is-~se~-----~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
..++|++||||+||||++++++.++. ..+..+. ..++ +..+... ..........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46799999999999999999998764 2222221 1111 1111000 01122333344567899999999753
No 384
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.97 E-value=0.0059 Score=59.28 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..+.-.++|+||+||||++|.|++|.-
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 445567999999999999999999984
No 385
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0085 Score=65.91 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=60.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchhHH-------Hh---hc---cchHHHHHHHHHHHhcCCe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE-------LY---VG---MGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~~~-------~~---vG---~~~~~vr~lF~~A~~~~P~ 426 (597)
.+.-++|.||+|+||||++..+|.++ |..+..+++..+.. .| .| .....+.++...+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 35568899999999999999998754 44455555443211 11 01 1112234444444444556
Q ss_pred EEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC---CCCCcEEEEeecCCCCCCChhhh
Q 007591 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---DSNSAVIVLGATNRSDVLDPALR 489 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~---~~~~~VIVIaaTNrpd~Ld~aLl 489 (597)
+|+||=...... + ...+..|...++.. .+...++|+.+|...+.+...+.
T Consensus 302 ~VLIDTaGr~~r----------d---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 302 LILIDTAGYSHR----------N---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEEeCCCCCcc----------C---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 888886422110 1 12233333333322 23356777777777666655443
No 386
>PF13479 AAA_24: AAA domain
Probab=96.96 E-value=0.0021 Score=64.17 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=39.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCe-EEeecchh-HHH------hhccchHHHHHHHHHHH--hcCCeEEEEcCcc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEF-VEL------YVGMGASRVRDLFARAK--KEAPSIIFIDEID 434 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pf-i~is~se~-~~~------~vG~~~~~vr~lF~~A~--~~~P~ILfIDEID 434 (597)
+..++||||||+|||++|..+ +-|+ +.+..... ... +.-.+-..+.+.+..+. ...-.+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 456999999999999999987 3332 22222200 000 00113344555554432 2345699999988
Q ss_pred hh
Q 007591 435 AV 436 (597)
Q Consensus 435 aL 436 (597)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 387
>PRK06696 uridine kinase; Validated
Probab=96.96 E-value=0.001 Score=66.72 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=34.2
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
..|.-|.+.|++|+||||+|+.|+..+ |.+++.++..+|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346678899999999999999999988 7888888877774
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0025 Score=60.01 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=44.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCC--eEEeecchhHH-------Hhhc-----cchHHHHHHHHHHHhcCCeEE
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFVE-------LYVG-----MGASRVRDLFARAKKEAPSII 428 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~p--fi~is~se~~~-------~~vG-----~~~~~vr~lF~~A~~~~P~IL 428 (597)
.+...+.|.||+|+|||+|++++++..... -+.+++..... ..++ .+....+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 445678999999999999999999976321 12333221110 1011 011233444556666678899
Q ss_pred EEcCcch
Q 007591 429 FIDEIDA 435 (597)
Q Consensus 429 fIDEIDa 435 (597)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999864
No 389
>PRK14530 adenylate kinase; Provisional
Probab=96.94 E-value=0.0008 Score=67.01 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=27.2
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.|+|.||||+|||++|+.+|..++++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999877654
No 390
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.94 E-value=0.0046 Score=60.27 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=18.1
Q ss_pred eEEecCCCChHHHHHHHHH
Q 007591 368 VLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA 386 (597)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 391
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.94 E-value=0.00087 Score=68.00 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=29.5
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.|..++|.||||+||||+|+.+|..++++++++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3456999999999999999999999998877653
No 392
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.94 E-value=0.00071 Score=62.99 Aligned_cols=28 Identities=36% Similarity=0.763 Sum_probs=25.0
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
++|+|+||+|||++|+.++..++.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 393
>PRK06547 hypothetical protein; Provisional
Probab=96.94 E-value=0.00087 Score=65.04 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=30.3
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
..+.-|++.|++|+|||++|+.++..+++++++++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45667899999999999999999999998887653
No 394
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.94 E-value=0.003 Score=62.26 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred CeeEEecCCCChHHHHHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4589999999999999999983
No 395
>PLN02200 adenylate kinase family protein
Probab=96.93 E-value=0.00085 Score=68.23 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=33.1
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
.+.|..++|.||||+|||++|+.+|.++|++ .++.++++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 4556778999999999999999999999865 4666666543
No 396
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.92 E-value=0.0024 Score=68.55 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=64.3
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecch------hHHHh--hccc--------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se------~~~~~--vG~~-------------- 409 (597)
|.....-..|+||||||||.|+..+|-.. +..+++++... +.... .|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45556668899999999999999886322 24566665533 11100 0110
Q ss_pred -hH----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 410 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 -~~----~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
.. .+..+-.......+.+|+||-|-++.+..-.+ .+...++.+.+.+++..|..+....++.||.+.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01 11222222334568899999999887542111 112234455667766666555444555555554
No 397
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.92 E-value=0.0028 Score=59.73 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.0
Q ss_pred eEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~ 403 (597)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66777777655543
No 398
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.90 E-value=0.0019 Score=70.14 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=45.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcC-----CCeEEeecc-hhH-----------HHhhccchHHHHHHHHHHHhcCCeEEE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS-EFV-----------ELYVGMGASRVRDLFARAKKEAPSIIF 429 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg-----~pfi~is~s-e~~-----------~~~vG~~~~~vr~lF~~A~~~~P~ILf 429 (597)
.+|++||+|+|||+++++++++.. ..++.+.-+ ++. ...+|.......+.+..+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 588999999999999999988762 234444211 211 111222223456677788888999999
Q ss_pred EcCcc
Q 007591 430 IDEID 434 (597)
Q Consensus 430 IDEID 434 (597)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99985
No 399
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.89 E-value=0.0019 Score=64.23 Aligned_cols=30 Identities=40% Similarity=0.631 Sum_probs=26.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.|+++||||+|||++|+.+|..++++.+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999777664
No 400
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.89 E-value=0.00081 Score=63.61 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=26.5
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
++|.||+|+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987665 44444
No 401
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.039 Score=56.57 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=99.1
Q ss_pred CCCeeEEecCCC-ChHHHHHHHHHHhcC---------CCeEEeecchhHHH-hhccchHHHHHHHHHHHh----cCCeEE
Q 007591 364 PPRGVLLVGLPG-TGKTLLAKAVAGEAE---------VPFISCSASEFVEL-YVGMGASRVRDLFARAKK----EAPSII 428 (597)
Q Consensus 364 ~p~gVLL~GPPG-TGKT~LAkAIA~elg---------~pfi~is~se~~~~-~vG~~~~~vr~lF~~A~~----~~P~IL 428 (597)
.....||.|..+ +||..++.-++..+. -.++.+....-... -..-+...+|++.+.+.. +...|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 345699999998 999999888776542 22333322100000 001234567777665543 345699
Q ss_pred EEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHH
Q 007591 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508 (597)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR 508 (597)
+|+++|.|.. ...|.||..++. +..++++|..|..++.|.|.+++ |. ..+.++.|+...-
T Consensus 94 II~~ae~mt~---------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~ 153 (263)
T PRK06581 94 IIYSAELMNL---------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAY 153 (263)
T ss_pred EEechHHhCH---------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHH
Confidence 9999999863 345899999985 45567777777788889999988 53 2788999988888
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 509 EAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 509 ~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
.++....+. +..++..++.|.+.+
T Consensus 154 ~e~~~~~~~----p~~~~~~l~~i~~~~ 177 (263)
T PRK06581 154 NELYSQFIQ----PIADNKTLDFINRFT 177 (263)
T ss_pred HHHHHHhcc----cccccHHHHHHHHHh
Confidence 877777663 444454566666554
No 402
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.87 E-value=0.011 Score=63.07 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=28.0
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
..|.-++|.||+|+||||++..+|..+ +..+..+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 456778999999999999999999865 444554544
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.86 E-value=0.0059 Score=60.14 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred CeeEEecCCCChHHHHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA 386 (597)
+.++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 404
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.86 E-value=0.0027 Score=60.98 Aligned_cols=105 Identities=23% Similarity=0.353 Sum_probs=58.2
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEeecchh--------HHH----------hh-------ccchHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--------VEL----------YV-------GMGASRVRD 415 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is~se~--------~~~----------~v-------G~~~~~vr~ 415 (597)
.+...+.|.||+|+|||+|++++++.... --+.+++.++ ... +. =.+..+-+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 34556899999999999999999986421 0111211111 000 00 011223455
Q ss_pred HHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 416 LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 416 lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
.+..|....|.++++||--.- .+....+.+.+++..+.. . +..+|.+|+..+
T Consensus 106 ~la~al~~~p~~lllDEPt~~-----------LD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~ 157 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSH-----------LDVEGERALNQAIAALKA---A-GATRIVIAHRPE 157 (173)
T ss_pred HHHHHHhcCCCEEEEECCccc-----------cCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHH
Confidence 566677788999999997432 222334455555555431 1 334555666543
No 405
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.0025 Score=63.58 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=20.9
Q ss_pred eEEecCCCChHHHHHHHHHHhc
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el 389 (597)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 406
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.86 E-value=0.0064 Score=67.19 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecchh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se~ 401 (597)
.++.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35678999999999999988887643 345666666543
No 407
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.85 E-value=0.0052 Score=58.79 Aligned_cols=74 Identities=28% Similarity=0.404 Sum_probs=44.7
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCC-----------CeEEeecc------hhHHHh----hc--cchHHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------PFISCSAS------EFVELY----VG--MGASRVRDLFA 418 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-----------pfi~is~s------e~~~~~----vG--~~~~~vr~lF~ 418 (597)
..+..-+.|.||.|+|||+|++.+++.... .+.++... ...+.. .. .+..+.+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 345667899999999999999999996420 01111100 011110 00 11223455566
Q ss_pred HHHhcCCeEEEEcCcch
Q 007591 419 RAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 419 ~A~~~~P~ILfIDEIDa 435 (597)
.|....|.++++||-..
T Consensus 104 ral~~~p~~lllDEPt~ 120 (166)
T cd03223 104 RLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHcCCCEEEEECCcc
Confidence 66677899999999754
No 408
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.84 E-value=0.0011 Score=63.21 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
+.++|+|++|+|||++++.+|.+++.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 45899999999999999999999999988653
No 409
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.84 E-value=0.0048 Score=60.19 Aligned_cols=72 Identities=24% Similarity=0.195 Sum_probs=43.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEeecchh--H-HHh-hccchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--V-ELY-VGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is~se~--~-~~~-vG~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
.+...+.|.||.|+|||||++.+++.... --+.+++..+ . ... .. +..+.+-.+..+....|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LS-gGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS-GGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCC-HHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 44556889999999999999999986421 0111211110 0 000 11 122345556666677899999999743
No 410
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.83 E-value=0.0012 Score=63.81 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeec
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~ 398 (597)
+..|+|.||+|+|||++++.+|+.++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999887654
No 411
>PTZ00035 Rad51 protein; Provisional
Probab=96.83 E-value=0.0044 Score=66.40 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecchh------HHHh--hccc--------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se~------~~~~--vG~~-------------- 409 (597)
|.....-+.|+||||+|||+|+..++... +-..++++..+- .... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 45566668899999999999999987533 234555554331 1110 0000
Q ss_pred --h---HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 410 --A---SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 --~---~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
+ ..+..+........+.+|+||-|-++.+..-.+ .+...++.+.+.+++..|..+....++.|+.+.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtN 265 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVITN 265 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEec
Confidence 0 111112222234567899999999987542111 112234555667777666655444556666443
No 412
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.82 E-value=0.006 Score=60.59 Aligned_cols=111 Identities=28% Similarity=0.461 Sum_probs=62.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r 440 (597)
|......++|.|+.|+|||++.+.|+.+ ++.-+.... ........ .... -|+.|||++.+.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~~----l~~~--~iveldEl~~~~k~~ 111 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLEQ----LQGK--WIVELDELDGLSKKD 111 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHHH----HHHh--HheeHHHHhhcchhh
Confidence 4555667889999999999999999666 222111111 01111111 1111 289999999876221
Q ss_pred CCccccccchHHHHHHHHHHHh-hcCCCC---------CCcEEEEeecCCCCCC-ChhhhCCCCcceEEEecC
Q 007591 441 DGRFRIVSNDEREQTLNQLLTE-MDGFDS---------NSAVIVLGATNRSDVL-DPALRRPGRFDRVVMVET 502 (597)
Q Consensus 441 ~~~~~~~~~~e~e~~Ln~LL~e-md~~~~---------~~~VIVIaaTNrpd~L-d~aLlRpgRFd~~I~v~~ 502 (597)
...+..+++. .+.+.. ....++|+|||..+.| |+.=-| ||- .|.+..
T Consensus 112 ------------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf~-~v~v~~ 169 (198)
T PF05272_consen 112 ------------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RFW-PVEVSK 169 (198)
T ss_pred ------------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EEE-EEEEcC
Confidence 1233444433 222211 2357889999998766 444455 774 455544
No 413
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.82 E-value=0.0031 Score=67.64 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.1
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999999987
No 414
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.81 E-value=0.0017 Score=69.22 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=47.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEee-cchhHHH------hhccchHHHHHHHHHHHhcCCeEEEEcC
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVEL------YVGMGASRVRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is-~se~~~~------~vG~~~~~vr~lF~~A~~~~P~ILfIDE 432 (597)
..++|++|++|+|||+++++++.+. +..++.+. ..|+.-. +.....-...++++.+.+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 22333332 1122100 0011122467888888999999999999
Q ss_pred cc
Q 007591 433 ID 434 (597)
Q Consensus 433 ID 434 (597)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 83
No 415
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0041 Score=59.58 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=24.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+...+.|.||+|+|||+|.+++++..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4456679999999999999999999965
No 416
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.79 E-value=0.0043 Score=64.81 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc----C-CCeEEeecch
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASE 400 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el----g-~pfi~is~se 400 (597)
.+..++|+||+|+||||++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 46679999999999999999998754 3 5666666554
No 417
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.78 E-value=0.0099 Score=66.73 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh----cCCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e----lg~pfi~is~s 399 (597)
|..+...+|+.||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5667788999999999999999988543 26777777654
No 418
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.78 E-value=0.015 Score=56.01 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=24.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+...+.|.||+|+|||+|++++++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4456679999999999999999999964
No 419
>PRK13695 putative NTPase; Provisional
Probab=96.78 E-value=0.012 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.++|.|++|+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 420
>PRK14528 adenylate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=64.48 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=27.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
+.+++.||||+|||++|+.++..++++++++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887664
No 421
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.77 E-value=0.0038 Score=64.92 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=29.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
+.-++|.|+||||||++|+.++.++. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 34588999999999999999999983 3455555555444
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.77 E-value=0.025 Score=62.54 Aligned_cols=197 Identities=20% Similarity=0.283 Sum_probs=98.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchhHHH-------h---h-------c--cc-hHHHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL-------Y---V-------G--MG-ASRVRDLFA 418 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~~~~-------~---v-------G--~~-~~~vr~lF~ 418 (597)
..|..++++||+|+|||++|..+|..+ |..+..+++..+... + . + .. .....+.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457789999999999999988887653 566766766533211 0 0 0 11 122345566
Q ss_pred HHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChh--hhCCCCcce
Q 007591 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA--LRRPGRFDR 496 (597)
Q Consensus 419 ~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~a--LlRpgRFd~ 496 (597)
.+......+|+||=.-.+. .++..-..+.++... ..+...++|+-++...+.++-+ +...-.++.
T Consensus 177 ~~~~~~~DvVIIDTaGr~~----------~d~~l~~eL~~i~~~---~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~g 243 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQ----------IDEELMEELAAIKEI---LNPDEILLVVDAMTGQDAVNTAKTFNERLGLTG 243 (428)
T ss_pred HHHhcCCCEEEEeCCCccc----------cCHHHHHHHHHHHHh---hCCceEEEEEeccchHHHHHHHHHHHhhCCCCE
Confidence 6666666789988764432 111112222222222 2233345555444322222211 111112333
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCC-----------CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 007591 497 VVMVETPDKIGREAILKVHVSKKELPLA-----------KDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (597)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~l~~~~l~l~-----------~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~---------A~ 556 (597)
.| +-..|...+...+.......++|+. ...+.+.++.+.-| -+|+..|+..|... +.
T Consensus 244 iI-lTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg--~gD~~~l~e~~~~~~~~~~~~~~~~ 320 (428)
T TIGR00959 244 VV-LTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILG--MGDILSLVEKAQEVVDEEEAKKLAE 320 (428)
T ss_pred EE-EeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhC--CCChHHHHHHHHHhhCHHHHHHHHH
Confidence 33 4455544554433333333233321 12345666766644 34677777655332 11
Q ss_pred hcCCccccHHHHHHHHHHH
Q 007591 557 RLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 557 r~~~~~It~~d~~~Al~rv 575 (597)
+-.+...+.+||.+-++.+
T Consensus 321 ~~~~~~f~l~d~~~q~~~~ 339 (428)
T TIGR00959 321 KMKKGQFDLEDFLEQLRQI 339 (428)
T ss_pred HHHhCCCCHHHHHHHHHHH
Confidence 1123457888888877664
No 423
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0044 Score=59.53 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+...+.|.||+|+|||+|++.+++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445568999999999999999999964
No 424
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.74 E-value=0.0082 Score=57.38 Aligned_cols=33 Identities=36% Similarity=0.408 Sum_probs=26.9
Q ss_pred eEEecCCCChHHHHHHHHHHhc---CCCeEEeecch
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se 400 (597)
++++||||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6899999999999999998764 66677776653
No 425
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.74 E-value=0.0013 Score=63.11 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=25.3
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
-++|.||||+||||+|+.++.++|.+.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 48899999999999999999998866543
No 426
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.74 E-value=0.011 Score=55.33 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=17.8
Q ss_pred CeeEEecCCCChHHH-HHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTL-LAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~-LAkAIA~e 388 (597)
+.+++.||+|+|||. ++..+...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 469999999999999 55555443
No 427
>PRK14527 adenylate kinase; Provisional
Probab=96.74 E-value=0.0013 Score=64.29 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=28.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
+.|.-++++||||+|||++|+.+|.+++.+.++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 4566799999999999999999999998766543
No 428
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0012 Score=63.40 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=26.2
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
+-+.|||||||||+|+.+|.++|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999976
No 429
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.73 E-value=0.0039 Score=66.22 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=63.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc------C---CCeEEeecchhHH------Hh--hccc--------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA------E---VPFISCSASEFVE------LY--VGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el------g---~pfi~is~se~~~------~~--vG~~-------------- 409 (597)
|..+..-+.++||||+|||+|+..++..+ + -..++++..+-.. .. .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 45666678899999999999999987532 1 2556666554111 00 0100
Q ss_pred -hH----HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 410 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 -~~----~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
.. .+..+........+++|+||-|-++....-.+ .+....+.+.+.+++..|..+....++.|+.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~--~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG--RGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC--cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01 11222222234568899999999986532111 011123344456666666555444555665554
No 430
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.72 E-value=0.0043 Score=61.11 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=33.4
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc-CCCeEEeecchhHHHh
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELY 405 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is~se~~~~~ 405 (597)
..|.-+++.|+||+|||+++..+..++ +-.++.++..++....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 567889999999999999999999988 7888999988875543
No 431
>PRK02496 adk adenylate kinase; Provisional
Probab=96.72 E-value=0.0015 Score=63.27 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.7
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.++|.||||+|||++|+.+|..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998876654
No 432
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.70 E-value=0.0045 Score=59.39 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.3
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC---CCeEEeecchhHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 403 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~se~~~ 403 (597)
..|.-++|.|+||+|||++|+++++++. ...+.+++..+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 4566799999999999999999999875 3355566555543
No 433
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.70 E-value=0.01 Score=56.48 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.9
Q ss_pred CCeeEEecCCCChHHHHHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999743
No 434
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.69 E-value=0.0022 Score=68.29 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=47.0
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEee-cchhHH---H---hhccchHHHHHHHHHHHhcCCeEEEEc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVE---L---YVGMGASRVRDLFARAKKEAPSIIFID 431 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is-~se~~~---~---~vG~~~~~vr~lF~~A~~~~P~ILfID 431 (597)
..++++++|++|+|||+++++++.+. ...++.+. ..++.- . +.....-...++++.+.+..|+.|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34679999999999999999999863 12222221 111110 0 001112346788999999999999999
Q ss_pred Ccc
Q 007591 432 EID 434 (597)
Q Consensus 432 EID 434 (597)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 984
No 435
>PRK13808 adenylate kinase; Provisional
Probab=96.69 E-value=0.0076 Score=64.45 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=28.6
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
.|+|+||||+|||++++.|+..++++.+++ .+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~--gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST--GDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc--cHHHH
Confidence 389999999999999999999998766554 45543
No 436
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.0043 Score=71.36 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=24.5
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..+|...+-|+||+|.|||++|.-+-+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567788999999999999999998773
No 437
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.67 E-value=0.016 Score=60.28 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=28.8
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~s 399 (597)
...++-++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3456788899999999999999988755 5555555544
No 438
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.67 E-value=0.0057 Score=65.74 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=67.1
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecch------hHHHh--hccc--------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se------~~~~~--vG~~-------------- 409 (597)
|.....-++++|+||+|||.|+..+|-.. +.+.++++..+ +.... .+..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 44556668899999999999999877432 22567776554 11110 0000
Q ss_pred -hHHHHHHH----HHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 410 -ASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 410 -~~~vr~lF----~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
......++ .......+.+|+||-|-++.+..-.+ .+...++.+.+.+++..|..+....++.||.+..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 01111222 22344568899999999987542111 1122344556777777776655555666665543
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.66 E-value=0.0015 Score=64.76 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=28.3
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
|+|.||||+|||++|+.+|..++++.+++ .+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~--gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST--GDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh--hHHHH
Confidence 78999999999999999999998777654 34443
No 440
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.66 E-value=0.015 Score=65.63 Aligned_cols=40 Identities=33% Similarity=0.391 Sum_probs=30.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecch
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASE 400 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se 400 (597)
|.++..-+||+|+||+|||+|+..++.+. |-++++++..+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 45667779999999999999999876532 66777776543
No 441
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.66 E-value=0.037 Score=60.77 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.1
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~ 518 (597)
..|..+| |.|.-+.|.+.-.+.+.-+.++..++..
T Consensus 197 k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 197 KPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred hhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 5667777 4466678999988888888888888865
No 442
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.65 E-value=0.011 Score=62.11 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCcEEEEeec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC------CCCCCCCCCHHHHHHhCCCCC
Q 007591 469 NSAVIVLGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK------ELPLAKDIDLGDIASMTTGFT 540 (597)
Q Consensus 469 ~~~VIVIaaT--Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~------~l~l~~dvdl~~LA~~t~G~S 540 (597)
++.|++|+|| |....+.++|++++| ++.+.+++.++..++++..+... .+.++++ .++.|+..+.| .
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~~---v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~-al~~ia~~a~G-D 80 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRLF---ILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDG-LYNAMHNYNEG-D 80 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhhh---eeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHH-HHHHHHHhcCC-H
Confidence 5668888777 556899999999443 89999999999999999988642 1334333 37778888876 4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 007591 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~ 577 (597)
.|-..|++..|+..+...+...||.+++.+++.+...
T Consensus 81 aR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~ 117 (300)
T PRK14700 81 CRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSR 117 (300)
T ss_pred HHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHh
Confidence 4555555555543222222234899999988876543
No 443
>PRK12338 hypothetical protein; Provisional
Probab=96.65 E-value=0.027 Score=59.89 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.9
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pf 393 (597)
.|.-+++.|+||+|||++|+++|..++...
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 466789999999999999999999998765
No 444
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.64 E-value=0.0046 Score=63.75 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=65.4
Q ss_pred eEEecCCCChHHHHHHHHHHhc---------CCCeEEeecch-h--------HHHhhccch------------------H
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE-F--------VELYVGMGA------------------S 411 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se-~--------~~~~vG~~~------------------~ 411 (597)
.=|+||||+|||.||..+|-.. +...++++... | .+.+.-... .
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 3489999999999999887543 23366665432 1 111100000 0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC
Q 007591 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 412 ~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld 485 (597)
.+..+-.........+|+||-|-++.+..-.+ .+...++.+.+..++..|..+....++.||.+.......+
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 11222222233456799999999998654211 1233466777888777777666556666665553333333
No 445
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.64 E-value=0.0022 Score=64.24 Aligned_cols=134 Identities=26% Similarity=0.350 Sum_probs=62.7
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~ 445 (597)
-++|+||+|||||.+|-++|++.|.|++..+.-.... ..+|.+ +....-+ +..+ =+++||-..--
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~el----~~~~-RiyL~~r~l~~-------- 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPSEL----KGTR-RIYLDDRPLSD-------- 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGG----TT-E-EEES----GGG--------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHHHH----cccc-eeeeccccccC--------
Confidence 3689999999999999999999999999987644333 223322 1111101 1112 37888643211
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC-CCC--ChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhc
Q 007591 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DVL--DPALRRPGRFD-RVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 446 ~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp-d~L--d~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~ 518 (597)
+.-..++....|+..++......++|+=+-+... ..+ ++-... .|. .+..++.||.+....-.+...++
T Consensus 69 --G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 69 --GIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp ---S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred --CCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 1122344566777777777775555554443210 000 111101 232 34566788887766666555554
No 446
>PRK14529 adenylate kinase; Provisional
Probab=96.64 E-value=0.0069 Score=61.30 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=26.5
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.++|.||||+|||++++.++..++.++++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~ 31 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIES 31 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCccc
Confidence 388999999999999999999999877543
No 447
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.62 E-value=0.0048 Score=64.63 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=47.1
Q ss_pred eEEecCCCChHHHHHHHHHHhcCC----CeEEeec-chh---------HHHhhccchHHHHHHHHHHHhcCCeEEEEcCc
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEF---------VELYVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~----pfi~is~-se~---------~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEI 433 (597)
||++||.|+|||+...++-++.+. .++.+.- -+| ...-+|..-......++.|.+..|+||++-|+
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEm 207 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEM 207 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEecc
Confidence 677899999999999998887642 2333311 122 12245555556667777888889999999998
Q ss_pred ch
Q 007591 434 DA 435 (597)
Q Consensus 434 Da 435 (597)
-.
T Consensus 208 RD 209 (353)
T COG2805 208 RD 209 (353)
T ss_pred cc
Confidence 54
No 448
>PRK04040 adenylate kinase; Provisional
Probab=96.62 E-value=0.0018 Score=63.65 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc--CCCeEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA--EVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el--g~pfi~ 395 (597)
|+-++++|+||+|||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 4568999999999999999999998 555543
No 449
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.61 E-value=0.0063 Score=71.21 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhC
Q 007591 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR 490 (597)
Q Consensus 411 ~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlR 490 (597)
.+-|-.+.+|.-..|.||++||.-+ .-+.+.++.+.+-|.++.. +..+|..|.|+..+ +
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTS-----------aLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~ti-----~ 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATS-----------ALDPETEAIILQNLLQILQ-----GRTVIIIAHRLSTI-----R 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCccc-----------ccCHhHHHHHHHHHHHHhc-----CCeEEEEEccchHh-----h
Confidence 3445666667778899999999843 2344556666666666542 23445566665433 3
Q ss_pred CCCcceEEEecC
Q 007591 491 PGRFDRVVMVET 502 (597)
Q Consensus 491 pgRFd~~I~v~~ 502 (597)
+.|+.+.++.
T Consensus 673 --~adrIiVl~~ 682 (709)
T COG2274 673 --SADRIIVLDQ 682 (709)
T ss_pred --hccEEEEccC
Confidence 4566665543
No 450
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.61 E-value=0.0063 Score=68.33 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=60.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-eEEecCCCChHHHHHHHHHHhcC---CCeEEeec-chh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAE---VPFISCSA-SEF 401 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~g-VLL~GPPGTGKT~LAkAIA~elg---~pfi~is~-se~ 401 (597)
...+++++.-.++..+.|+.++. .+.| +|++||+|+|||++.+++..++. ..++++.- -++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34578888777777777776653 2334 78999999999999998887764 33444422 111
Q ss_pred HHHh-----hcc-chHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 402 VELY-----VGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 402 ~~~~-----vG~-~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
.-.. +.. ........+..+.+..|+||+|.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1100 110 012345566677788999999999854
No 451
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.60 E-value=0.005 Score=65.65 Aligned_cols=71 Identities=27% Similarity=0.283 Sum_probs=46.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccch--------HHHHH---HHHHHHhcCCeEEEEcCcc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA--------SRVRD---LFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~--------~~vr~---lF~~A~~~~P~ILfIDEID 434 (597)
+.++|.|+||+|||+|++.+++..+.+++.-.+.++.....+... ..+.. ....+...+..|||+|- +
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-C
Confidence 469999999999999999999999999977666655544321110 11111 12333344566999995 5
Q ss_pred hhh
Q 007591 435 AVA 437 (597)
Q Consensus 435 aL~ 437 (597)
.+.
T Consensus 242 ~~~ 244 (325)
T TIGR01526 242 FIT 244 (325)
T ss_pred hHH
Confidence 543
No 452
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.59 E-value=0.009 Score=64.60 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH
Q 007591 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 338 de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~ 403 (597)
+|++..+..+++.+.. ..|..+++.||.|||||++.+++...+ +..++.+..+....
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAA 63 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHH
Confidence 4566666666655432 456789999999999999999998766 33455444443333
No 453
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.58 E-value=0.016 Score=63.96 Aligned_cols=196 Identities=16% Similarity=0.203 Sum_probs=96.3
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH-------H--------hhc-----cchHHHHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------L--------YVG-----MGASRVRDLFAR 419 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~-------~--------~vG-----~~~~~vr~lF~~ 419 (597)
.+|.-++|+||+|+||||++..+|..+ |..+..+++..+.. . +.+ .......+.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 456789999999999999999998755 66666666643310 0 000 001223345555
Q ss_pred HHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC--hhhhCCCCcceE
Q 007591 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD--PALRRPGRFDRV 497 (597)
Q Consensus 420 A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld--~aLlRpgRFd~~ 497 (597)
++.....+||||=...+. .+ +..+.++....+...+...++|+-++.-.+.++ .++.....++ -
T Consensus 178 ~~~~~~DvViIDTaGr~~----------~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~-g 243 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK----------QE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG-S 243 (429)
T ss_pred HHhCCCCEEEEECCCCCc----------ch---HHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCc-E
Confidence 655556688888764321 11 223333333333333444455554443222221 2222211122 2
Q ss_pred EEecCCCHHHHHH-HHHHHHhcCCCCC-----------CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 007591 498 VMVETPDKIGREA-ILKVHVSKKELPL-----------AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (597)
Q Consensus 498 I~v~~Pd~~eR~~-ILk~~l~~~~l~l-----------~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~---------A~ 556 (597)
+-+-..|...|.. +|..... .+.|+ -...+.+.++.+.-| -+|+..|+..|... +.
T Consensus 244 ~IlTKlD~~argG~aLs~~~~-t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg--mgDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 244 VIITKLDGHAKGGGALSAVAA-TKSPIIFIGTGEHIDDFEIFKTQPFISKLLG--MGDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred EEEECccCCCCccHHhhhHHH-HCCCeEEEcCCCChhhcCcCChHHHHHHHhc--CCCcHHHHHHHHHhhhHHHHHHHHH
Confidence 3344555555542 2322211 12221 112345566666544 24666666654322 11
Q ss_pred hcCCccccHHHHHHHHHHH
Q 007591 557 RLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 557 r~~~~~It~~d~~~Al~rv 575 (597)
+-.+...+.+||.+-++.+
T Consensus 321 k~~~~~f~l~D~~~q~~~i 339 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQFQNL 339 (429)
T ss_pred HHHhCCCCHHHHHHHHHHH
Confidence 1123457888888777664
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.58 E-value=0.0047 Score=68.66 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=62.2
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-eEEecCCCChHHHHHHHHHHhcCCCeE-EeecchhHHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEFVEL 404 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~g-VLL~GPPGTGKT~LAkAIA~elg~pfi-~is~se~~~~ 404 (597)
...+|+++.......+.+.+++. .|.| +|++||.|+|||+...++.++++-+.. .++..|-++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 45778888888887777776653 3445 566799999999999999998865544 2333333332
Q ss_pred h------------hccchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 405 Y------------VGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 405 ~------------vG~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
. .|.+ ....++...+..|+||++.||-.
T Consensus 299 ~~~gI~Q~qVN~k~glt---fa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLT---FARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCC---HHHHHHHHhccCCCeEEEeccCC
Confidence 1 1111 23445556678899999999954
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.56 E-value=0.0093 Score=60.36 Aligned_cols=20 Identities=40% Similarity=0.346 Sum_probs=18.2
Q ss_pred eEEecCCCChHHHHHHHHHH
Q 007591 368 VLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~ 387 (597)
-+|+||||+|||+|+-.+|-
T Consensus 4 ~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 58999999999999998875
No 456
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.56 E-value=0.016 Score=65.31 Aligned_cols=107 Identities=24% Similarity=0.204 Sum_probs=62.9
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhh------c----------------------cc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------G----------------------MG 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~v------G----------------------~~ 409 (597)
|......++++||||+|||+++..++.+. |-++++++..+-.+.+. | ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 45666778999999999999999987643 66777765542221110 0 00
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 410 ~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
...+..+.+......+.+|+||-+..+.... ......+.+..|...+. ..++.+|.+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~-------~~~~~~~~l~~l~~~~k----~~~~t~l~t~ 406 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG-------SLNEFRQFVIRLTDYLK----SEEITGLFTN 406 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC-------CHHHHHHHHHHHHHHHH----hCCCeEEEEe
Confidence 1223333444455678899999999886422 12233444555555554 2344555443
No 457
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.56 E-value=0.0062 Score=74.73 Aligned_cols=134 Identities=21% Similarity=0.269 Sum_probs=90.1
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh------HHHhhccchHH---HHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF------VELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~------~~~~vG~~~~~---vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
.+||-||..+|||.+.+.+|++.|-.|+.++-.+. +..|+...... -..++-.|.+... -|++||+.-..
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy-WIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY-WIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc-EEEeeccccCc
Confidence 49999999999999999999999999999976433 33343322211 1334444544433 78999986432
Q ss_pred hhcCCccccccchHHHHHHHHHHHhhcC---------CCCCCcEEEEeecCCC------CCCChhhhCCCCcceEEEecC
Q 007591 438 KSRDGRFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 438 ~~r~~~~~~~~~~e~e~~Ln~LL~emd~---------~~~~~~VIVIaaTNrp------d~Ld~aLlRpgRFd~~I~v~~ 502 (597)
. ..-..+|.||..-.. ..++..+.++||-|.| ..|..|++. ||- .++|+-
T Consensus 969 T------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFdd 1033 (4600)
T COG5271 969 T------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDD 1033 (4600)
T ss_pred H------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhccc
Confidence 1 123455666543221 1345678888888887 467888887 885 567777
Q ss_pred CCHHHHHHHHHHHH
Q 007591 503 PDKIGREAILKVHV 516 (597)
Q Consensus 503 Pd~~eR~~ILk~~l 516 (597)
-..+|.+.||...+
T Consensus 1034 ipedEle~ILh~rc 1047 (4600)
T COG5271 1034 IPEDELEEILHGRC 1047 (4600)
T ss_pred CcHHHHHHHHhccC
Confidence 77888888887765
No 458
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.55 E-value=0.0054 Score=67.21 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
-.+.|.|.|++|||||||+++||...|.+++.--+-++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 3567999999999999999999999998876654444443
No 459
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.53 E-value=0.0044 Score=59.87 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=41.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc-------------CCCeEEeecchhH----HHh---------------hc------
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA-------------EVPFISCSASEFV----ELY---------------VG------ 407 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el-------------g~pfi~is~se~~----~~~---------------vG------ 407 (597)
.-++|+||||+|||+++-.++..+ +.++++++...-. ..+ ..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 348899999999999999887643 2356666543221 110 00
Q ss_pred -----------cchHHHHHHHHHHHh-cCCeEEEEcCcchhhhh
Q 007591 408 -----------MGASRVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 408 -----------~~~~~vr~lF~~A~~-~~P~ILfIDEIDaL~~~ 439 (597)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011223455555666 56889999999998754
No 460
>PRK10436 hypothetical protein; Provisional
Probab=96.53 E-value=0.0077 Score=67.19 Aligned_cols=93 Identities=15% Similarity=0.283 Sum_probs=60.5
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC---CCeEEeecchhHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 404 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~se~~~~ 404 (597)
..+++++.-.++..+.+++++.. +..-+|++||+|+||||+..++..+++ ..++++. +-++.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiE--DPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVE--DPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEec--CCccc
Confidence 45788887777776677766531 223478899999999999988877764 3344332 11121
Q ss_pred h--------hcc-chHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 405 Y--------VGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 405 ~--------vG~-~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
. ++. ........+..+.+..|+||+|.||-.
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 1 111 112356677778888999999999853
No 461
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.53 E-value=0.0065 Score=66.40 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
....++|+||||+|||+|++.+++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 445599999999999999999999753
No 462
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.52 E-value=0.0054 Score=60.20 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.|+-++|+||+|+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45668999999999999999998764
No 463
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.51 E-value=0.024 Score=56.03 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=31.0
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG 407 (597)
-+.|+|++|+|||++++.++..+|.+++ ++.++......
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~ 41 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALA 41 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHh
Confidence 4889999999999999999998888877 45556554433
No 464
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.50 E-value=0.014 Score=68.61 Aligned_cols=97 Identities=23% Similarity=0.346 Sum_probs=56.7
Q ss_pred eeEEecCCCChHHHHHHHHHHhc---C--CCeEEeecchh----HHHhhccchHHHHHHHHHHH----------hcCCeE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA---E--VPFISCSASEF----VELYVGMGASRVRDLFARAK----------KEAPSI 427 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el---g--~pfi~is~se~----~~~~vG~~~~~vr~lF~~A~----------~~~P~I 427 (597)
-++|.|+||||||++++++...+ + .+++.+..+.- +....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986643 4 45554433211 11122333344444443211 123469
Q ss_pred EEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
|+|||+..+. ...+..|+..+ .....+++++=.+..
T Consensus 420 lIvDEaSMvd---------------~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMD---------------TWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCC---------------HHHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999997663 12345555543 445677777766554
No 465
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.50 E-value=0.016 Score=56.90 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+...+.|.||+|+|||+|.+.+++..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455679999999999999999999976
No 466
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.50 E-value=0.0021 Score=64.19 Aligned_cols=23 Identities=52% Similarity=0.531 Sum_probs=18.4
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
-+.+.||+|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999998754
No 467
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.49 E-value=0.011 Score=57.04 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+...+.|.||+|+|||+|++.+++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678999999999999999999964
No 468
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.48 E-value=0.01 Score=57.49 Aligned_cols=28 Identities=39% Similarity=0.450 Sum_probs=23.8
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+...+.|.||+|+|||+|++.+++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455568999999999999999999864
No 469
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.47 E-value=0.0018 Score=57.70 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.9
Q ss_pred eEEecCCCChHHHHHHHHHHhc
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el 389 (597)
|+|.|+||+|||++|+.++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 470
>PRK01184 hypothetical protein; Provisional
Probab=96.46 E-value=0.0024 Score=61.63 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=25.5
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999998 788999888665
No 471
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.46 E-value=0.0048 Score=57.76 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=28.0
Q ss_pred EecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 370 LVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 370 L~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
|.||||+|||++|+.||.+.++ .+++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999875 4566666665543
No 472
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0022 Score=62.24 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=27.0
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.++++|.||||||++++.++ ++|.++++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9999888765
No 473
>PRK04182 cytidylate kinase; Provisional
Probab=96.43 E-value=0.0028 Score=60.33 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.8
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
.|+|.|++|+|||++|+.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998875
No 474
>PF13245 AAA_19: Part of AAA domain
Probab=96.43 E-value=0.0041 Score=52.32 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=21.2
Q ss_pred eEEecCCCChHH-HHHHHHHHhc------CCCeEEeec
Q 007591 368 VLLVGLPGTGKT-LLAKAVAGEA------EVPFISCSA 398 (597)
Q Consensus 368 VLL~GPPGTGKT-~LAkAIA~el------g~pfi~is~ 398 (597)
+++.|||||||| ++++.++... +..++.+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 556999999999 5666666554 445555544
No 475
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.40 E-value=0.021 Score=56.91 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred CCeeEEecCCCChHHHHHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
.+-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
No 476
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.40 E-value=0.031 Score=60.69 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
...||+||||||||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 347999999999999999998865
No 477
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0095 Score=57.48 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.1
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+...+.|.||.|+|||+|++++++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445568899999999999999999864
No 478
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.39 E-value=0.03 Score=66.35 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.0
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..++|+||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56899999999999999999875
No 479
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.38 E-value=0.003 Score=59.67 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.5
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
|.|+|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997654
No 480
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.38 E-value=0.0081 Score=68.68 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=60.3
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC---CCeEEeecc-hhH-
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-EFV- 402 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~s-e~~- 402 (597)
..+++++.-.++..+.+++++.. +...+|++||+|+|||++..++.++++ ..++.+.-+ ++.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 45677877777766666666531 122478999999999999998888764 234433211 111
Q ss_pred ----HHhhc-cchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 403 ----ELYVG-MGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 403 ----~~~vG-~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
...+. .........+..+.+..|.||+|.||-.
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 00011 1112356677788889999999999954
No 481
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.37 E-value=0.023 Score=55.33 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=30.8
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccch
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~ 410 (597)
|.|+|.+|+|||++++.++...+.+++ ++.++.......+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~~~~ 42 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVEKGS 42 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHhcCC
Confidence 689999999999999999998667765 45566555444433
No 482
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.02 Score=56.01 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.+...+.|.||+|+|||+|++.+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44556899999999999999999974
No 483
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.014 Score=56.05 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=30.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
.+..+.|.|+||+|||++|+.++..+ +..+..+++..+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 34568899999999999999999876 4456666665543
No 484
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.34 E-value=0.0034 Score=59.46 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=24.6
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
|.|+|+||||||+|+++++.. |.+++.-.+.++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 789999999999999999998 88877544444443
No 485
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.34 E-value=0.0089 Score=64.12 Aligned_cols=61 Identities=30% Similarity=0.499 Sum_probs=41.0
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhHHhhhCC-CCCCeeEEecCCCChHHHHHHHHHHhcC-CCeEEeec
Q 007591 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSA 398 (597)
Q Consensus 331 f~-dV~G~de~k~~L~eiv~~l~~p~~~~~lg~-~~p~gVLL~GPPGTGKT~LAkAIA~elg-~pfi~is~ 398 (597)
|+ ++.|++++.+ ++|++++... .|. ...+-++|.||+|+|||+|++.+-+-+. .+++.+..
T Consensus 59 f~~~~~G~~~~i~---~lV~~fk~AA----~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~ 122 (358)
T PF08298_consen 59 FEDEFYGMEETIE---RLVNYFKSAA----QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKG 122 (358)
T ss_pred ccccccCcHHHHH---HHHHHHHHHH----hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecC
Confidence 44 8999998755 4555554432 132 3345678999999999999999987552 35555533
No 486
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.34 E-value=0.005 Score=66.07 Aligned_cols=70 Identities=29% Similarity=0.380 Sum_probs=47.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCC--CeEEee-cchhH-------HHh------hccchHHHHHHHHHHHhcCCeEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFV-------ELY------VGMGASRVRDLFARAKKEAPSII 428 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is-~se~~-------~~~------vG~~~~~vr~lF~~A~~~~P~IL 428 (597)
..++++.|++|+|||++++++.++... ..+.+. ..|+. ... .|.+.-...+++..+.+..|..|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 457999999999999999999987531 111111 11111 000 12223456788999999999999
Q ss_pred EEcCcc
Q 007591 429 FIDEID 434 (597)
Q Consensus 429 fIDEID 434 (597)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999984
No 487
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.33 E-value=0.022 Score=69.62 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=50.6
Q ss_pred EEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC--CCChhhhCCCCcceEEEecCCC
Q 007591 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD 504 (597)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd--~Ld~aLlRpgRFd~~I~v~~Pd 504 (597)
||+|||+..|.... ..+.+..+..|.. .....+|.+|.+|.+|+ .|...++. -|...|-|..-+
T Consensus 1143 VVIIDE~AdLm~~~--------~kevE~lI~rLAq----kGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1143 VVLVDEFADLMMTV--------GKKVEELIARLAQ----KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEcChHHHHhhh--------hHHHHHHHHHHHH----HhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 89999998876421 1233333444333 33356899999999985 67666665 677788888888
Q ss_pred HHHHHHHHHH
Q 007591 505 KIGREAILKV 514 (597)
Q Consensus 505 ~~eR~~ILk~ 514 (597)
..+-+.||..
T Consensus 1209 ~~DSrtILd~ 1218 (1355)
T PRK10263 1209 KIDSRTILDQ 1218 (1355)
T ss_pred HHHHHHhcCC
Confidence 8888877754
No 488
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.33 E-value=0.057 Score=60.10 Aligned_cols=86 Identities=12% Similarity=0.148 Sum_probs=50.4
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 007591 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 497 ~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (597)
.+.+-..|.++-++-+........ ...+ .+...+ +-..|+.+=+.....|...+-..|+..+++++++..+
T Consensus 386 ~flv~isdeeeH~~Rf~~Ra~~~~--~~r~--~~ky~~-----~f~~IR~IQdyLv~~A~~~~ipvI~n~nid~tv~~~l 456 (475)
T PRK12337 386 PMLVTLPDEALHRRRFELRDRETG--ASRP--RERYLR-----HFEEIRLIQDHLLRLARQEGVPVLPGEDLDESIDKAL 456 (475)
T ss_pred EEEEEECCHHHHHHHHHHHhhhcc--CCCc--hhHHHH-----hHHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHH
Confidence 345556677777777766664321 1111 222222 1234555555556667777888899999999999887
Q ss_pred cchhhh-ccCCCHHHH
Q 007591 577 AGIEKK-TAKLKGSEK 591 (597)
Q Consensus 577 ~g~~k~-~~~ls~~ek 591 (597)
..+-++ ...+++.++
T Consensus 457 ~~i~~~~~~~~~~~~~ 472 (475)
T PRK12337 457 EVVLRRVMAALTPEER 472 (475)
T ss_pred HHHHHHHHHhcCHHhh
Confidence 654333 335555544
No 489
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.33 E-value=0.016 Score=68.34 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=42.7
Q ss_pred eeEEecCCCChHHHHHHHHHHh---cCCCeEEeecchhHHH----hhccchHHHHHHHHHHH-----hcCCeEEEEcCcc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL----YVGMGASRVRDLFARAK-----KEAPSIIFIDEID 434 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~se~~~~----~vG~~~~~vr~lF~~A~-----~~~P~ILfIDEID 434 (597)
-++|.|+||||||++++++... .|..++.+..+..... ..|..+..+..+..... .....+|+|||+-
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEas 449 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAG 449 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECcc
Confidence 5789999999999999998653 3666666644433222 12222233333322111 1234699999986
Q ss_pred hhh
Q 007591 435 AVA 437 (597)
Q Consensus 435 aL~ 437 (597)
.+.
T Consensus 450 Mv~ 452 (744)
T TIGR02768 450 MVG 452 (744)
T ss_pred cCC
Confidence 653
No 490
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.33 E-value=0.021 Score=57.71 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.1
Q ss_pred CCCeeEEecCCCChHHHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
....++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999987
No 491
>PRK08233 hypothetical protein; Provisional
Probab=96.33 E-value=0.0038 Score=59.54 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=26.2
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcC-CCeEEeec
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSA 398 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg-~pfi~is~ 398 (597)
.-|.+.|+||+||||+|+.++..++ .+++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3477889999999999999999885 44555543
No 492
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.31 E-value=0.015 Score=66.54 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=25.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..++...+.|.||+|+|||||++.+++..
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35667779999999999999999999865
No 493
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.031 Score=60.90 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=59.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc--CCCeEEeecchhHHHhh------c--------cchHHHHHHHHHHHhcCCe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVELYV------G--------MGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el--g~pfi~is~se~~~~~v------G--------~~~~~vr~lF~~A~~~~P~ 426 (597)
-+..-+|+-|.||.|||||.-.++..+ ..+++++++.+-..... + ..+..+.+++..+....|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 455568888999999999888887654 23899999876654321 1 1344578888889999999
Q ss_pred EEEEcCcchhhhhc
Q 007591 427 IIFIDEIDAVAKSR 440 (597)
Q Consensus 427 ILfIDEIDaL~~~r 440 (597)
+++||-|+.+....
T Consensus 171 lvVIDSIQT~~s~~ 184 (456)
T COG1066 171 LVVIDSIQTLYSEE 184 (456)
T ss_pred EEEEeccceeeccc
Confidence 99999999987654
No 494
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.31 E-value=0.029 Score=54.80 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+...+.|.||+|+|||+|++++++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678999999999999999999964
No 495
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.31 E-value=0.019 Score=55.62 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=28.7
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhc
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG 407 (597)
|.|+|++|+|||++++.++. +|++++. +.++......
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~~~~ 38 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHEVYE 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHhhhh
Confidence 68999999999999999998 7877655 4555544433
No 496
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.012 Score=61.23 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=97.5
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHH
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~ 412 (597)
+++-.+++.+.+-.+..-+..|. .++||.|.+|+||++++|..|.-++..++.+..+.-.+ ..+-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 57778888888888887776642 47999999999999999998988899999887543211 1122345
Q ss_pred HHHHHHHHH-hcCCeEEEEcCcch-----------hhhhcCCccccccchHHHHHHHHHHHhhcCC--------------
Q 007591 413 VRDLFARAK-KEAPSIIFIDEIDA-----------VAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-------------- 466 (597)
Q Consensus 413 vr~lF~~A~-~~~P~ILfIDEIDa-----------L~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~-------------- 466 (597)
++.++.+|- ++.|.+++|+|-+- |.... +--..-..+|.+.++..+...+...
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sG-eip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~ 155 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSG-EIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFI 155 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCS-S-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCC-CCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHH
Confidence 666666554 56688888887442 21111 1111223567777777766554321
Q ss_pred ---CCCCcEEEEeecCCCCCC------ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 007591 467 ---DSNSAVIVLGATNRSDVL------DPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 467 ---~~~~~VIVIaaTNrpd~L------d~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~ 518 (597)
..+=.|+++.... .+.+ -|+|.. ...+..+...+.+....+-..++++
T Consensus 156 ~rvr~nLHivl~~sp~-~~~~r~~~~~fPaL~~---~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 156 ERVRKNLHIVLCMSPV-GPNFRDRCRSFPALVN---CCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHCCCEEEEEEESTT-TTCCCHHHHHHCCHHH---HSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHhheeEEEEECCC-CchHHHHHHhCcchhc---ccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 1111344433332 2333 244444 2346677788888888888888765
No 497
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.018 Score=62.62 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecc
Q 007591 337 VDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 337 ~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~s 399 (597)
.+++...+.+.+.. +..+..+ ...+++.++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 35555666655544 2222211 23457789999999999999999998755 4455555554
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.27 E-value=0.0067 Score=65.60 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=43.0
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcC------CCeEEeec-chhHHH------------hhccchHHHHHHHHHHHhcCCe
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAE------VPFISCSA-SEFVEL------------YVGMGASRVRDLFARAKKEAPS 426 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg------~pfi~is~-se~~~~------------~vG~~~~~vr~lF~~A~~~~P~ 426 (597)
..++++||+|+|||+++++++++.. ..++.+.- .++.-. .++.........+..+.+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4589999999999999999998752 22333211 111100 0111112345556667788999
Q ss_pred EEEEcCcc
Q 007591 427 IIFIDEID 434 (597)
Q Consensus 427 ILfIDEID 434 (597)
++++.|+-
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999974
No 499
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.25 E-value=0.017 Score=64.21 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCC
Q 007591 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPG 492 (597)
Q Consensus 413 vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpg 492 (597)
-|-.+.+|.-..|.+|++||=++= -+.+-|+.+..-+..+. ..++++|..|.+|..|.
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsN-----------LD~~GE~AL~~Ai~~~k----~rG~~vvviaHRPs~L~------- 536 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSN-----------LDSEGEAALAAAILAAK----ARGGTVVVIAHRPSALA------- 536 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCC-----------cchhHHHHHHHHHHHHH----HcCCEEEEEecCHHHHh-------
Confidence 344455555678999999997542 22334566665555554 45567777888885442
Q ss_pred CcceEEEecC---CCHHHHHHHHHHHHh
Q 007591 493 RFDRVVMVET---PDKIGREAILKVHVS 517 (597)
Q Consensus 493 RFd~~I~v~~---Pd~~eR~~ILk~~l~ 517 (597)
..|++..+.. -..-.|.+++.....
T Consensus 537 ~~Dkilvl~~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 537 SVDKILVLQDGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred hcceeeeecCChHHhcCCHHHHHHHhcC
Confidence 2233333221 122456778877765
No 500
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.026 Score=58.16 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 412 ~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
.-|-++.+|....|.++++||--. +.+...+..+.++|.++.. . +..|+..|.+..
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~-----------gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~ 200 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFT-----------GVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcc-----------cCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcH
Confidence 346677888888999999999522 2233445667777777752 2 556666776553
Done!