Query 007591
Match_columns 597
No_of_seqs 537 out of 3273
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3E-53 1E-57 454.8 29.8 256 322-580 138-394 (405)
2 4b4t_H 26S protease regulatory 100.0 6E-52 2.1E-56 450.1 28.1 267 323-597 200-467 (467)
3 4b4t_I 26S protease regulatory 100.0 7.3E-52 2.5E-56 445.8 26.9 256 323-581 173-429 (437)
4 4b4t_M 26S protease regulatory 100.0 6.4E-51 2.2E-55 441.6 26.6 253 323-578 172-425 (434)
5 4b4t_L 26S protease subunit RP 100.0 1.8E-50 6.1E-55 438.4 28.6 254 322-578 171-425 (437)
6 4b4t_K 26S protease regulatory 100.0 9.4E-50 3.2E-54 432.0 28.8 252 323-577 163-416 (428)
7 3cf2_A TER ATPase, transitiona 100.0 7.7E-51 2.6E-55 468.7 13.1 336 242-580 342-748 (806)
8 2ce7_A Cell division protein F 100.0 5.4E-44 1.8E-48 392.1 28.3 269 326-597 10-278 (476)
9 2dhr_A FTSH; AAA+ protein, hex 100.0 2.4E-42 8.3E-47 381.0 23.5 273 322-597 21-293 (499)
10 3cf2_A TER ATPase, transitiona 100.0 9.8E-43 3.3E-47 401.4 19.6 248 325-578 197-462 (806)
11 1lv7_A FTSH; alpha/beta domain 100.0 5.4E-39 1.8E-43 322.5 28.0 253 324-579 4-256 (257)
12 2qz4_A Paraplegin; AAA+, SPG7, 100.0 7.7E-40 2.6E-44 327.0 18.8 262 327-588 1-262 (262)
13 2x8a_A Nuclear valosin-contain 100.0 1.3E-39 4.6E-44 333.3 20.9 253 325-581 3-270 (274)
14 3cf0_A Transitional endoplasmi 100.0 1.4E-38 4.8E-43 328.7 26.1 253 323-578 6-284 (301)
15 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.3E-37 1.1E-41 322.1 24.1 227 324-558 4-233 (322)
16 3h4m_A Proteasome-activating n 100.0 1.6E-36 5.5E-41 307.9 28.3 252 324-578 9-261 (285)
17 1ixz_A ATP-dependent metallopr 100.0 6.5E-36 2.2E-40 299.6 28.5 247 323-572 7-253 (254)
18 3eie_A Vacuolar protein sortin 100.0 4.1E-37 1.4E-41 320.4 19.9 250 322-579 8-302 (322)
19 2qp9_X Vacuolar protein sortin 100.0 5.5E-36 1.9E-40 316.9 23.1 249 324-580 43-336 (355)
20 2r62_A Cell division protease 100.0 4E-38 1.4E-42 317.3 5.0 257 324-582 3-260 (268)
21 1iy2_A ATP-dependent metallopr 100.0 2.5E-34 8.6E-39 292.7 29.7 246 324-572 32-277 (278)
22 3hu3_A Transitional endoplasmi 100.0 9.3E-35 3.2E-39 320.2 25.8 247 327-579 199-463 (489)
23 2zan_A Vacuolar protein sortin 100.0 1.3E-34 4.5E-39 315.2 20.9 228 323-558 125-355 (444)
24 1ypw_A Transitional endoplasmi 100.0 5E-37 1.7E-41 356.5 -2.4 315 242-559 342-702 (806)
25 3d8b_A Fidgetin-like protein 1 100.0 7.7E-33 2.6E-37 292.7 23.7 246 326-579 78-338 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 2.5E-33 8.4E-38 286.4 19.0 247 324-578 13-275 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 5.2E-32 1.8E-36 288.9 22.6 247 324-578 107-368 (389)
28 1ypw_A Transitional endoplasmi 100.0 2.1E-28 7.1E-33 284.3 23.6 246 325-576 197-460 (806)
29 3t15_A Ribulose bisphosphate c 99.9 1.1E-28 3.8E-33 254.3 5.7 176 361-546 32-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 6.4E-26 2.2E-30 247.2 10.3 171 326-504 31-225 (456)
31 3uk6_A RUVB-like 2; hexameric 99.9 9.4E-24 3.2E-28 221.2 19.0 223 326-576 38-331 (368)
32 3syl_A Protein CBBX; photosynt 99.9 5.6E-24 1.9E-28 217.7 14.5 223 333-569 32-280 (309)
33 3pfi_A Holliday junction ATP-d 99.9 2.9E-22 1E-26 208.0 24.4 216 326-575 23-254 (338)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 1.8E-21 6.2E-26 200.1 20.2 231 327-594 7-253 (324)
35 1ofh_A ATP-dependent HSL prote 99.9 2.3E-21 7.8E-26 197.3 15.0 238 332-575 15-299 (310)
36 2v1u_A Cell division control p 99.8 5.4E-20 1.9E-24 191.9 22.2 244 328-593 15-295 (387)
37 1d2n_A N-ethylmaleimide-sensit 99.8 3E-20 1E-24 187.7 15.8 227 330-575 31-264 (272)
38 2z4s_A Chromosomal replication 99.8 3.6E-20 1.2E-24 201.3 16.9 224 326-576 99-333 (440)
39 2chg_A Replication factor C sm 99.8 2.9E-19 9.7E-24 170.7 20.6 203 326-573 11-224 (226)
40 3m6a_A ATP-dependent protease 99.8 6.5E-21 2.2E-25 212.4 8.8 228 328-577 77-343 (543)
41 2qby_B CDC6 homolog 3, cell di 99.8 6.7E-19 2.3E-23 184.6 22.1 234 329-594 17-290 (384)
42 3pvs_A Replication-associated 99.8 1.3E-19 4.4E-24 197.6 17.1 208 326-576 20-245 (447)
43 3hws_A ATP-dependent CLP prote 99.8 9.3E-20 3.2E-24 192.1 14.6 236 333-572 16-346 (363)
44 1l8q_A Chromosomal replication 99.8 2.8E-19 9.4E-24 185.1 17.3 220 327-576 6-241 (324)
45 3bos_A Putative DNA replicatio 99.8 2.4E-19 8.1E-24 174.7 14.6 207 327-573 23-241 (242)
46 1g41_A Heat shock protein HSLU 99.8 1.2E-20 4E-25 205.2 5.4 168 332-512 15-188 (444)
47 3u61_B DNA polymerase accessor 99.8 2.7E-19 9.3E-24 184.8 14.5 205 324-574 18-236 (324)
48 1in4_A RUVB, holliday junction 99.8 6.8E-18 2.3E-22 176.5 24.5 216 327-576 20-251 (334)
49 1g8p_A Magnesium-chelatase 38 99.8 8.2E-19 2.8E-23 181.9 17.1 222 325-578 17-325 (350)
50 1njg_A DNA polymerase III subu 99.8 3.4E-18 1.2E-22 164.7 20.2 204 326-572 17-248 (250)
51 2qby_A CDC6 homolog 1, cell di 99.8 2.5E-18 8.7E-23 178.9 20.3 242 328-593 16-291 (386)
52 1sxj_A Activator 1 95 kDa subu 99.8 6.5E-19 2.2E-23 194.9 15.7 224 325-573 32-272 (516)
53 2r44_A Uncharacterized protein 99.8 1.1E-18 3.7E-23 181.0 16.4 215 330-578 25-300 (331)
54 1sxj_D Activator 1 41 kDa subu 99.8 4.9E-18 1.7E-22 176.0 17.8 210 324-573 29-261 (353)
55 1um8_A ATP-dependent CLP prote 99.8 3.1E-18 1.1E-22 181.2 14.6 237 333-573 22-363 (376)
56 1fnn_A CDC6P, cell division co 99.8 3.1E-17 1.1E-21 171.7 20.8 240 328-593 13-293 (389)
57 1r6b_X CLPA protein; AAA+, N-t 99.8 8.2E-18 2.8E-22 193.7 17.3 223 328-576 182-434 (758)
58 2chq_A Replication factor C sm 99.7 9.3E-18 3.2E-22 171.0 15.3 202 325-571 10-222 (319)
59 4fcw_A Chaperone protein CLPB; 99.7 7.7E-18 2.6E-22 172.0 13.0 204 332-556 17-279 (311)
60 1sxj_B Activator 1 37 kDa subu 99.7 5.4E-17 1.9E-21 165.6 19.0 203 326-573 15-229 (323)
61 1jbk_A CLPB protein; beta barr 99.7 5.8E-18 2E-22 157.9 10.6 159 328-512 18-194 (195)
62 1jr3_A DNA polymerase III subu 99.7 8.9E-17 3.1E-21 167.8 20.2 204 326-572 10-241 (373)
63 3pxg_A Negative regulator of g 99.7 2.9E-17 9.9E-22 179.7 16.1 190 327-558 175-388 (468)
64 3te6_A Regulatory protein SIR3 99.7 1.4E-17 4.7E-22 174.1 12.3 215 334-576 22-316 (318)
65 1iqp_A RFCS; clamp loader, ext 99.7 1.1E-16 3.7E-21 163.6 16.8 188 325-552 18-216 (327)
66 3pxi_A Negative regulator of g 99.7 5.4E-17 1.9E-21 187.1 15.0 199 332-555 491-724 (758)
67 1qvr_A CLPB protein; coiled co 99.7 8.6E-17 2.9E-21 187.9 15.9 204 328-558 166-395 (854)
68 3pxi_A Negative regulator of g 99.7 2E-16 6.9E-21 182.4 16.8 190 327-558 175-388 (758)
69 1r6b_X CLPA protein; AAA+, N-t 99.7 9.3E-17 3.2E-21 184.9 13.1 197 332-555 458-715 (758)
70 2bjv_A PSP operon transcriptio 99.7 2.8E-16 9.7E-21 157.8 14.7 205 329-568 3-250 (265)
71 2p65_A Hypothetical protein PF 99.7 8.9E-17 3E-21 150.0 7.9 152 328-504 18-187 (187)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 7.1E-17 2.4E-21 178.2 8.3 210 333-576 23-286 (500)
73 1sxj_C Activator 1 40 kDa subu 99.7 9.9E-16 3.4E-20 159.8 16.0 209 324-572 17-236 (340)
74 1sxj_E Activator 1 40 kDa subu 99.6 1.9E-15 6.5E-20 157.2 17.5 193 326-555 8-244 (354)
75 1ojl_A Transcriptional regulat 99.6 5.5E-16 1.9E-20 160.4 9.9 204 332-570 2-247 (304)
76 1w5s_A Origin recognition comp 99.6 1.1E-14 3.8E-19 153.6 19.5 245 330-593 20-313 (412)
77 3f9v_A Minichromosome maintena 99.6 2.2E-16 7.6E-21 177.8 6.0 224 332-579 295-591 (595)
78 1qvr_A CLPB protein; coiled co 99.6 1.5E-15 5.3E-20 177.3 11.8 203 331-556 557-820 (854)
79 3k1j_A LON protease, ATP-depen 99.5 7.3E-14 2.5E-18 157.3 10.8 218 325-574 34-374 (604)
80 3n70_A Transport activator; si 99.5 4.2E-14 1.4E-18 130.2 7.1 112 333-481 2-116 (145)
81 1a5t_A Delta prime, HOLB; zinc 99.5 1.3E-12 4.4E-17 136.5 19.2 174 337-551 7-208 (334)
82 3co5_A Putative two-component 99.4 3.5E-14 1.2E-18 130.5 4.1 112 333-481 5-116 (143)
83 3cmw_A Protein RECA, recombina 99.4 5.1E-14 1.7E-18 172.7 5.6 156 325-481 1013-1218(1706)
84 2gno_A DNA polymerase III, gam 99.3 9.3E-12 3.2E-16 129.1 15.2 142 336-516 1-152 (305)
85 3kw6_A 26S protease regulatory 99.3 8.2E-12 2.8E-16 103.7 9.8 75 501-577 1-75 (78)
86 3vlf_B 26S protease regulatory 99.3 7.6E-12 2.6E-16 106.7 9.4 79 504-584 2-80 (88)
87 2krk_A 26S protease regulatory 99.3 7.2E-12 2.5E-16 106.5 9.0 77 500-578 8-84 (86)
88 1ny5_A Transcriptional regulat 99.3 7.3E-12 2.5E-16 133.7 10.1 207 331-572 136-384 (387)
89 4akg_A Glutathione S-transfera 99.2 8.6E-11 2.9E-15 149.9 17.2 172 365-553 1267-1487(2695)
90 3ec2_A DNA replication protein 99.2 4.3E-11 1.5E-15 113.0 9.6 133 327-481 5-143 (180)
91 3aji_B S6C, proteasome (prosom 99.1 2.5E-10 8.5E-15 95.7 8.6 75 504-580 2-76 (83)
92 2w58_A DNAI, primosome compone 99.1 1.5E-10 5.2E-15 110.9 7.4 104 327-437 20-128 (202)
93 3f8t_A Predicted ATPase involv 99.0 9.2E-10 3.2E-14 120.0 12.9 215 334-579 215-487 (506)
94 2fna_A Conserved hypothetical 99.0 1.4E-08 4.8E-13 104.1 21.0 187 328-550 9-252 (357)
95 2qen_A Walker-type ATPase; unk 99.0 2E-08 6.8E-13 102.8 21.9 191 328-549 8-247 (350)
96 3dzd_A Transcriptional regulat 99.0 8.8E-10 3E-14 117.0 10.5 192 332-555 129-361 (368)
97 2dzn_B 26S protease regulatory 99.0 2.5E-10 8.6E-15 95.8 3.6 73 506-580 1-73 (82)
98 2qgz_A Helicase loader, putati 98.8 3.2E-09 1.1E-13 110.0 6.9 102 328-437 120-227 (308)
99 2kjq_A DNAA-related protein; s 98.8 1.1E-09 3.8E-14 101.7 2.8 59 364-437 35-96 (149)
100 2vhj_A Ntpase P4, P4; non- hyd 98.8 8.2E-10 2.8E-14 115.3 1.6 121 362-488 120-242 (331)
101 2r2a_A Uncharacterized protein 98.7 1.9E-08 6.4E-13 98.1 6.6 131 365-508 5-158 (199)
102 1jr3_D DNA polymerase III, del 98.6 4.1E-07 1.4E-11 94.5 13.3 180 363-575 16-209 (343)
103 4akg_A Glutathione S-transfera 98.5 2.4E-06 8.2E-11 109.6 21.5 170 365-555 645-840 (2695)
104 1svm_A Large T antigen; AAA+ f 98.5 4.7E-08 1.6E-12 104.2 4.5 120 360-502 164-284 (377)
105 3cmu_A Protein RECA, recombina 98.5 1.2E-07 4.2E-12 118.1 8.0 118 361-478 1423-1561(2050)
106 3vkg_A Dynein heavy chain, cyt 98.4 2.3E-06 7.7E-11 110.7 16.5 139 365-518 1304-1471(3245)
107 1tue_A Replication protein E1; 98.3 4.6E-07 1.6E-11 89.0 4.4 31 363-393 56-86 (212)
108 1ye8_A Protein THEP1, hypothet 98.0 2E-05 7E-10 74.9 10.0 28 367-394 2-29 (178)
109 2w0m_A SSO2452; RECA, SSPF, un 98.0 3.5E-05 1.2E-09 73.9 10.9 37 362-398 20-59 (235)
110 2cvh_A DNA repair and recombin 97.9 1.3E-05 4.4E-10 76.7 7.5 40 361-400 16-55 (220)
111 1u0j_A DNA replication protein 97.9 4E-05 1.4E-09 77.9 10.9 27 365-391 104-130 (267)
112 3vkg_A Dynein heavy chain, cyt 97.9 5.5E-05 1.9E-09 98.1 13.6 134 366-513 605-750 (3245)
113 2ehv_A Hypothetical protein PH 97.8 8.5E-05 2.9E-09 72.3 11.4 130 361-502 26-207 (251)
114 1n0w_A DNA repair protein RAD5 97.8 3E-05 1E-09 75.4 7.8 78 361-438 20-133 (243)
115 1z6t_A APAF-1, apoptotic prote 97.8 0.0003 1E-08 77.8 15.8 172 330-546 122-326 (591)
116 2z43_A DNA repair and recombin 97.8 3.6E-05 1.2E-09 79.8 7.7 79 361-439 103-218 (324)
117 1qhx_A CPT, protein (chloramph 97.8 5.6E-05 1.9E-09 70.2 8.3 39 365-403 3-41 (178)
118 1xp8_A RECA protein, recombina 97.8 4.3E-05 1.5E-09 81.1 8.1 78 361-438 70-166 (366)
119 3hr8_A Protein RECA; alpha and 97.7 2.9E-05 9.8E-10 82.2 5.5 78 361-438 57-153 (356)
120 2zr9_A Protein RECA, recombina 97.7 4E-05 1.4E-09 80.7 6.1 78 361-438 57-153 (349)
121 1v5w_A DMC1, meiotic recombina 97.7 7E-05 2.4E-09 78.3 8.0 79 361-439 118-234 (343)
122 3cmu_A Protein RECA, recombina 97.7 3.5E-05 1.2E-09 96.4 6.4 120 361-480 728-868 (2050)
123 4a74_A DNA repair and recombin 97.6 8.8E-05 3E-09 71.3 7.5 29 361-389 21-49 (231)
124 3sfz_A APAF-1, apoptotic pepti 97.6 0.0013 4.5E-08 78.1 18.8 174 329-545 121-325 (1249)
125 3upu_A ATP-dependent DNA helic 97.6 0.00017 5.9E-09 78.1 9.5 53 325-389 17-69 (459)
126 2dr3_A UPF0273 protein PH0284; 97.5 0.00033 1.1E-08 67.9 10.4 39 361-399 19-60 (247)
127 1u94_A RECA protein, recombina 97.5 7.1E-05 2.4E-09 79.1 5.8 78 361-438 59-155 (356)
128 1g41_A Heat shock protein HSLU 97.5 0.00066 2.3E-08 73.7 12.9 156 411-574 239-432 (444)
129 2a5y_B CED-4; apoptosis; HET: 97.5 0.0014 4.8E-08 72.5 15.6 170 335-545 131-334 (549)
130 3io5_A Recombination and repai 97.4 0.00012 4.2E-09 76.3 6.0 72 367-438 30-125 (333)
131 3lda_A DNA repair protein RAD5 97.4 0.00013 4.5E-09 78.2 6.4 118 361-480 174-327 (400)
132 3trf_A Shikimate kinase, SK; a 97.4 7.4E-05 2.5E-09 69.9 3.8 32 365-396 5-36 (185)
133 2i1q_A DNA repair and recombin 97.4 0.00012 4.1E-09 75.4 5.7 116 361-478 94-256 (322)
134 2zts_A Putative uncharacterize 97.4 0.00056 1.9E-08 66.4 10.0 39 361-399 26-68 (251)
135 2p5t_B PEZT; postsegregational 97.4 0.0003 1E-08 70.0 8.1 60 338-401 9-68 (253)
136 1gvn_B Zeta; postsegregational 97.4 0.00028 9.5E-09 72.0 7.8 60 338-401 10-69 (287)
137 3cmw_A Protein RECA, recombina 97.4 9.3E-05 3.2E-09 91.6 4.8 78 361-438 728-824 (1706)
138 1pzn_A RAD51, DNA repair and r 97.4 0.0002 7E-09 75.1 6.8 40 361-400 127-175 (349)
139 3dm5_A SRP54, signal recogniti 97.4 0.00058 2E-08 74.1 10.4 197 364-576 99-341 (443)
140 3vaa_A Shikimate kinase, SK; s 97.3 0.00011 3.7E-09 70.2 3.9 34 363-396 23-56 (199)
141 2orw_A Thymidine kinase; TMTK, 97.3 9.6E-05 3.3E-09 70.6 3.5 31 366-396 4-37 (184)
142 2rhm_A Putative kinase; P-loop 97.3 0.00014 4.9E-09 68.1 4.3 35 362-396 2-36 (193)
143 2b8t_A Thymidine kinase; deoxy 97.3 0.00015 5.3E-09 71.7 4.6 71 366-437 13-102 (223)
144 2iut_A DNA translocase FTSK; n 97.3 0.0027 9.1E-08 70.9 14.8 74 426-513 345-420 (574)
145 1zp6_A Hypothetical protein AT 97.2 0.00023 7.8E-09 66.8 4.6 40 362-401 6-45 (191)
146 2iyv_A Shikimate kinase, SK; t 97.2 0.00018 6.2E-09 67.3 3.6 31 366-396 3-33 (184)
147 3iij_A Coilin-interacting nucl 97.2 0.00021 7.3E-09 66.6 3.8 33 364-396 10-42 (180)
148 1nlf_A Regulatory protein REPA 97.2 0.00036 1.2E-08 70.2 5.7 28 362-389 27-54 (279)
149 3kb2_A SPBC2 prophage-derived 97.1 0.00025 8.6E-09 64.9 3.9 31 367-397 3-33 (173)
150 1kag_A SKI, shikimate kinase I 97.1 0.0003 1E-08 64.9 4.4 31 365-395 4-34 (173)
151 2ius_A DNA translocase FTSK; n 97.1 0.0023 7.9E-08 70.7 12.0 77 424-514 296-375 (512)
152 1y63_A LMAJ004144AAA protein; 97.1 0.00024 8.3E-09 67.0 3.7 33 364-396 9-42 (184)
153 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00071 2.4E-08 67.6 7.1 39 365-403 4-45 (260)
154 1via_A Shikimate kinase; struc 97.1 0.00028 9.7E-09 65.6 3.8 29 367-395 6-34 (175)
155 2cdn_A Adenylate kinase; phosp 97.1 0.00033 1.1E-08 66.6 4.3 34 363-396 18-51 (201)
156 2r6a_A DNAB helicase, replicat 97.1 0.00064 2.2E-08 73.6 6.8 38 361-398 199-240 (454)
157 2fz4_A DNA repair protein RAD2 97.0 0.0016 5.4E-08 64.3 9.0 36 367-402 110-146 (237)
158 1zuh_A Shikimate kinase; alpha 97.0 0.0003 1E-08 64.8 3.6 31 366-396 8-38 (168)
159 3e1s_A Exodeoxyribonuclease V, 97.0 0.00044 1.5E-08 77.4 5.6 97 366-480 205-317 (574)
160 1tev_A UMP-CMP kinase; ploop, 97.0 0.00029 9.8E-09 65.8 3.2 32 365-396 3-34 (196)
161 1qf9_A UMP/CMP kinase, protein 97.0 0.00032 1.1E-08 65.3 3.5 33 364-396 5-37 (194)
162 1cr0_A DNA primase/helicase; R 97.0 0.00056 1.9E-08 69.2 5.4 37 361-397 31-71 (296)
163 2c95_A Adenylate kinase 1; tra 97.0 0.00036 1.2E-08 65.4 3.5 33 364-396 8-40 (196)
164 3lw7_A Adenylate kinase relate 97.0 0.00035 1.2E-08 63.5 3.2 29 367-396 3-31 (179)
165 3t61_A Gluconokinase; PSI-biol 97.0 0.00048 1.7E-08 65.5 4.3 32 365-396 18-49 (202)
166 1e6c_A Shikimate kinase; phosp 97.0 0.00042 1.4E-08 63.8 3.6 31 366-396 3-33 (173)
167 1ly1_A Polynucleotide kinase; 96.9 0.00037 1.3E-08 64.3 3.2 30 365-394 2-32 (181)
168 1aky_A Adenylate kinase; ATP:A 96.9 0.00052 1.8E-08 66.3 4.3 33 364-396 3-35 (220)
169 2q6t_A DNAB replication FORK h 96.9 0.001 3.4E-08 71.9 6.9 38 361-398 196-237 (444)
170 1zd8_A GTP:AMP phosphotransfer 96.9 0.00041 1.4E-08 67.5 3.5 34 363-396 5-38 (227)
171 2ze6_A Isopentenyl transferase 96.9 0.00047 1.6E-08 68.8 4.0 32 367-398 3-34 (253)
172 2pez_A Bifunctional 3'-phospho 96.9 0.00063 2.2E-08 63.4 4.4 39 363-401 3-44 (179)
173 2vli_A Antibiotic resistance p 96.9 0.00045 1.5E-08 64.2 3.3 30 365-394 5-34 (183)
174 2bwj_A Adenylate kinase 5; pho 96.9 0.00045 1.6E-08 64.9 3.3 32 365-396 12-43 (199)
175 3jvv_A Twitching mobility prot 96.9 0.0003 1E-08 74.3 2.0 68 367-434 125-206 (356)
176 4gp7_A Metallophosphoesterase; 96.9 0.00047 1.6E-08 64.5 3.1 21 364-384 8-28 (171)
177 1kht_A Adenylate kinase; phosp 96.8 0.00043 1.5E-08 64.4 2.8 25 366-390 4-28 (192)
178 3be4_A Adenylate kinase; malar 96.8 0.00044 1.5E-08 66.9 2.9 32 365-396 5-36 (217)
179 2r8r_A Sensor protein; KDPD, P 96.8 0.0034 1.2E-07 62.3 9.3 162 366-556 7-209 (228)
180 1ukz_A Uridylate kinase; trans 96.8 0.00057 1.9E-08 64.9 3.6 34 364-397 14-47 (203)
181 3dl0_A Adenylate kinase; phosp 96.8 0.00057 1.9E-08 65.6 3.6 30 367-396 2-31 (216)
182 3cm0_A Adenylate kinase; ATP-b 96.8 0.00051 1.8E-08 64.0 3.1 32 365-396 4-35 (186)
183 2i3b_A HCR-ntpase, human cance 96.8 0.0021 7.1E-08 61.7 7.4 23 367-389 3-25 (189)
184 2eyu_A Twitching motility prot 96.8 0.00047 1.6E-08 69.5 2.9 71 363-434 23-108 (261)
185 3bh0_A DNAB-like replicative h 96.8 0.0023 7.8E-08 66.0 8.1 38 361-398 64-104 (315)
186 3tlx_A Adenylate kinase 2; str 96.8 0.00058 2E-08 67.6 3.4 34 363-396 27-60 (243)
187 1ak2_A Adenylate kinase isoenz 96.8 0.00081 2.8E-08 65.8 4.4 33 364-396 15-47 (233)
188 3fb4_A Adenylate kinase; psych 96.8 0.00061 2.1E-08 65.3 3.4 30 367-396 2-31 (216)
189 1zak_A Adenylate kinase; ATP:A 96.8 0.00043 1.5E-08 67.0 2.3 32 364-395 4-35 (222)
190 4eun_A Thermoresistant glucoki 96.8 0.00083 2.8E-08 64.0 4.3 37 363-401 27-63 (200)
191 2pt5_A Shikimate kinase, SK; a 96.8 0.00066 2.3E-08 62.2 3.4 30 367-396 2-31 (168)
192 1knq_A Gluconate kinase; ALFA/ 96.7 0.00086 2.9E-08 62.1 3.9 31 365-395 8-38 (175)
193 3umf_A Adenylate kinase; rossm 96.7 0.00074 2.5E-08 66.5 3.6 40 362-403 26-65 (217)
194 1s96_A Guanylate kinase, GMP k 96.7 0.0035 1.2E-07 61.4 8.2 28 363-390 14-41 (219)
195 1vma_A Cell division protein F 96.7 0.0037 1.3E-07 64.5 8.3 73 362-434 101-196 (306)
196 1g5t_A COB(I)alamin adenosyltr 96.6 0.0093 3.2E-07 57.8 10.3 116 367-501 30-178 (196)
197 2ewv_A Twitching motility prot 96.6 0.0014 4.7E-08 69.4 4.7 73 362-434 133-219 (372)
198 1cke_A CK, MSSA, protein (cyti 96.6 0.0014 4.9E-08 63.0 4.4 30 366-395 6-35 (227)
199 3uie_A Adenylyl-sulfate kinase 96.6 0.0015 5E-08 62.3 4.4 39 363-401 23-64 (200)
200 1jjv_A Dephospho-COA kinase; P 96.6 0.0022 7.5E-08 61.0 5.6 28 367-395 4-31 (206)
201 2v54_A DTMP kinase, thymidylat 96.6 0.0017 5.6E-08 61.4 4.6 34 364-397 3-37 (204)
202 3crm_A TRNA delta(2)-isopenten 96.5 0.0013 4.5E-08 68.5 4.0 34 365-398 5-38 (323)
203 1nks_A Adenylate kinase; therm 96.5 0.0012 4.3E-08 61.3 3.4 35 367-401 3-40 (194)
204 3sr0_A Adenylate kinase; phosp 96.5 0.0014 4.6E-08 63.9 3.7 34 367-402 2-35 (206)
205 2pbr_A DTMP kinase, thymidylat 96.5 0.0017 5.9E-08 60.5 4.2 31 367-397 2-35 (195)
206 1e4v_A Adenylate kinase; trans 96.5 0.0013 4.5E-08 63.2 3.4 30 367-396 2-31 (214)
207 1ex7_A Guanylate kinase; subst 96.5 0.0028 9.4E-08 60.9 5.6 24 366-389 2-25 (186)
208 2px0_A Flagellar biosynthesis 96.5 0.013 4.4E-07 60.1 10.8 37 363-399 103-143 (296)
209 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.00092 3.1E-08 69.7 2.3 71 365-435 171-251 (330)
210 2if2_A Dephospho-COA kinase; a 96.4 0.0013 4.5E-08 62.3 3.1 30 367-397 3-32 (204)
211 3ake_A Cytidylate kinase; CMP 96.4 0.0022 7.4E-08 60.6 4.5 31 367-397 4-34 (208)
212 4a1f_A DNAB helicase, replicat 96.4 0.0085 2.9E-07 62.8 9.4 38 361-398 42-82 (338)
213 3kl4_A SRP54, signal recogniti 96.4 0.0071 2.4E-07 65.4 8.9 199 364-576 96-341 (433)
214 2jaq_A Deoxyguanosine kinase; 96.4 0.0017 5.8E-08 61.0 3.5 29 367-395 2-30 (205)
215 1tf7_A KAIC; homohexamer, hexa 96.4 0.016 5.4E-07 63.9 11.7 97 361-464 277-404 (525)
216 3b6e_A Interferon-induced heli 96.4 0.015 5.1E-07 54.8 10.0 23 366-388 49-71 (216)
217 2gxq_A Heat resistant RNA depe 96.4 0.015 5E-07 54.8 9.9 18 366-383 39-56 (207)
218 1uf9_A TT1252 protein; P-loop, 96.4 0.0019 6.4E-08 60.8 3.6 36 365-403 8-43 (203)
219 2xb4_A Adenylate kinase; ATP-b 96.3 0.002 7E-08 62.6 3.7 30 367-396 2-31 (223)
220 2z0h_A DTMP kinase, thymidylat 96.3 0.0026 9E-08 59.5 4.2 30 368-397 3-35 (197)
221 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0011 3.7E-08 70.1 1.5 30 366-395 25-54 (359)
222 3c8u_A Fructokinase; YP_612366 96.3 0.0028 9.4E-08 60.8 4.3 28 363-390 20-47 (208)
223 2bbw_A Adenylate kinase 4, AK4 96.3 0.0027 9.1E-08 62.5 4.3 32 364-395 26-57 (246)
224 2wwf_A Thymidilate kinase, put 96.2 0.0012 4.2E-08 62.7 1.5 29 364-392 9-37 (212)
225 1uj2_A Uridine-cytidine kinase 96.2 0.0033 1.1E-07 62.2 4.7 39 364-402 21-67 (252)
226 1q57_A DNA primase/helicase; d 96.2 0.0059 2E-07 66.7 7.1 39 361-399 238-280 (503)
227 1w36_D RECD, exodeoxyribonucle 96.2 0.011 3.6E-07 66.6 9.3 23 366-388 165-187 (608)
228 3r20_A Cytidylate kinase; stru 96.2 0.0029 9.8E-08 62.9 4.1 31 365-395 9-39 (233)
229 3ney_A 55 kDa erythrocyte memb 96.2 0.0047 1.6E-07 59.9 5.4 27 363-389 17-43 (197)
230 2plr_A DTMP kinase, probable t 96.2 0.0037 1.3E-07 59.0 4.6 31 365-395 4-36 (213)
231 2qor_A Guanylate kinase; phosp 96.2 0.0047 1.6E-07 59.0 5.3 29 362-390 9-37 (204)
232 3tau_A Guanylate kinase, GMP k 96.1 0.0045 1.6E-07 59.5 5.0 27 364-390 7-33 (208)
233 3nwj_A ATSK2; P loop, shikimat 96.1 0.0033 1.1E-07 63.0 4.0 32 365-396 48-79 (250)
234 1w4r_A Thymidine kinase; type 96.1 0.0086 3E-07 58.0 6.8 69 365-436 20-103 (195)
235 1nn5_A Similar to deoxythymidy 96.1 0.0016 5.4E-08 61.9 1.5 27 364-390 8-34 (215)
236 1t6n_A Probable ATP-dependent 96.1 0.11 3.7E-06 49.4 14.5 58 328-387 13-73 (220)
237 2qt1_A Nicotinamide riboside k 96.1 0.0027 9.1E-08 60.5 3.1 34 364-397 20-54 (207)
238 3a8t_A Adenylate isopentenyltr 96.1 0.0029 9.8E-08 66.4 3.4 35 365-399 40-74 (339)
239 2grj_A Dephospho-COA kinase; T 96.0 0.0066 2.2E-07 58.3 5.4 37 367-405 14-50 (192)
240 2yvu_A Probable adenylyl-sulfa 96.0 0.0053 1.8E-07 57.4 4.7 38 364-401 12-52 (186)
241 2h92_A Cytidylate kinase; ross 96.0 0.0047 1.6E-07 59.2 4.2 32 365-396 3-34 (219)
242 3zvl_A Bifunctional polynucleo 96.0 0.0071 2.4E-07 64.8 6.1 33 363-395 256-288 (416)
243 1hv8_A Putative ATP-dependent 96.0 0.041 1.4E-06 55.8 11.5 57 329-387 6-66 (367)
244 1tf7_A KAIC; homohexamer, hexa 96.0 0.018 6.1E-07 63.4 9.4 113 362-484 36-188 (525)
245 4e22_A Cytidylate kinase; P-lo 96.0 0.005 1.7E-07 61.2 4.5 31 365-395 27-57 (252)
246 1q3t_A Cytidylate kinase; nucl 96.0 0.0049 1.7E-07 60.3 4.4 34 363-396 14-47 (236)
247 1vht_A Dephospho-COA kinase; s 95.9 0.0047 1.6E-07 59.3 4.1 31 365-396 4-34 (218)
248 1ltq_A Polynucleotide kinase; 95.9 0.0027 9.2E-08 64.0 2.5 36 365-402 2-38 (301)
249 1m7g_A Adenylylsulfate kinase; 95.9 0.0042 1.4E-07 59.6 3.7 39 363-401 23-65 (211)
250 2axn_A 6-phosphofructo-2-kinas 95.9 0.016 5.3E-07 64.1 8.5 40 365-404 35-77 (520)
251 1kgd_A CASK, peripheral plasma 95.9 0.005 1.7E-07 57.7 3.9 26 364-389 4-29 (180)
252 3foz_A TRNA delta(2)-isopenten 95.9 0.0045 1.5E-07 64.2 3.8 35 364-398 9-43 (316)
253 2j41_A Guanylate kinase; GMP, 95.9 0.0046 1.6E-07 58.3 3.6 27 363-389 4-30 (207)
254 3llm_A ATP-dependent RNA helic 95.8 0.035 1.2E-06 54.0 10.0 21 366-386 77-97 (235)
255 3iuy_A Probable ATP-dependent 95.8 0.028 9.6E-07 54.0 9.1 56 326-383 16-75 (228)
256 2xau_A PRE-mRNA-splicing facto 95.8 0.018 6.1E-07 66.6 8.8 59 327-388 70-132 (773)
257 1vt4_I APAF-1 related killer D 95.7 0.015 5.3E-07 69.1 8.1 43 335-388 131-173 (1221)
258 2f6r_A COA synthase, bifunctio 95.7 0.0044 1.5E-07 62.7 3.0 35 365-402 75-109 (281)
259 3bgw_A DNAB-like replicative h 95.7 0.033 1.1E-06 60.3 10.0 38 361-398 193-233 (444)
260 1rz3_A Hypothetical protein rb 95.7 0.015 5E-07 55.5 6.4 37 363-399 20-59 (201)
261 3thx_B DNA mismatch repair pro 95.6 0.035 1.2E-06 65.4 10.5 110 363-485 671-800 (918)
262 1qde_A EIF4A, translation init 95.5 0.062 2.1E-06 51.2 10.3 52 328-381 13-67 (224)
263 3asz_A Uridine kinase; cytidin 95.5 0.0054 1.9E-07 58.4 2.7 32 364-395 5-38 (211)
264 1p9r_A General secretion pathw 95.5 0.024 8.2E-07 61.0 7.9 94 328-434 143-246 (418)
265 3d3q_A TRNA delta(2)-isopenten 95.5 0.0071 2.4E-07 63.4 3.6 32 366-397 8-39 (340)
266 2oap_1 GSPE-2, type II secreti 95.5 0.0057 2E-07 67.5 3.0 71 364-434 259-343 (511)
267 3tr0_A Guanylate kinase, GMP k 95.4 0.0088 3E-07 56.3 3.8 26 364-389 6-31 (205)
268 1xx6_A Thymidine kinase; NESG, 95.4 0.0079 2.7E-07 57.9 3.5 69 366-436 9-93 (191)
269 1lvg_A Guanylate kinase, GMP k 95.4 0.01 3.5E-07 56.6 4.3 26 364-389 3-28 (198)
270 4b3f_X DNA-binding protein smu 95.4 0.072 2.5E-06 60.0 11.7 57 329-399 183-242 (646)
271 3fe2_A Probable ATP-dependent 95.4 0.046 1.6E-06 53.2 8.9 55 327-383 27-84 (242)
272 2bdt_A BH3686; alpha-beta prot 95.4 0.0096 3.3E-07 55.7 3.8 34 367-401 4-37 (189)
273 3exa_A TRNA delta(2)-isopenten 95.4 0.0089 3E-07 62.2 3.8 33 366-398 4-36 (322)
274 3fdi_A Uncharacterized protein 95.3 0.0095 3.3E-07 57.4 3.8 29 367-395 8-36 (201)
275 3nh6_A ATP-binding cassette SU 95.3 0.06 2.1E-06 55.5 10.0 28 362-389 77-104 (306)
276 2pl3_A Probable ATP-dependent 95.3 0.068 2.3E-06 51.5 9.8 53 328-382 24-79 (236)
277 2qmh_A HPR kinase/phosphorylas 95.2 0.0088 3E-07 58.3 3.0 33 365-398 34-66 (205)
278 3a00_A Guanylate kinase, GMP k 95.2 0.01 3.6E-07 55.7 3.4 24 366-389 2-25 (186)
279 2yhs_A FTSY, cell division pro 95.1 0.13 4.4E-06 56.6 12.3 28 362-389 290-317 (503)
280 3bor_A Human initiation factor 95.0 0.042 1.4E-06 53.4 7.4 55 327-383 28-85 (237)
281 1q0u_A Bstdead; DEAD protein, 95.0 0.05 1.7E-06 52.0 7.7 18 366-383 42-59 (219)
282 3pey_A ATP-dependent RNA helic 94.9 0.26 9E-06 50.3 13.5 22 364-385 43-64 (395)
283 2v3c_C SRP54, signal recogniti 94.9 0.025 8.5E-07 61.1 5.9 36 364-399 98-136 (432)
284 1x6v_B Bifunctional 3'-phospho 94.9 0.016 5.5E-07 65.5 4.6 38 364-401 51-91 (630)
285 3eph_A TRNA isopentenyltransfe 94.9 0.011 3.9E-07 63.3 3.1 33 365-397 2-34 (409)
286 1vec_A ATP-dependent RNA helic 94.9 0.071 2.4E-06 50.0 8.4 18 366-383 41-58 (206)
287 1zu4_A FTSY; GTPase, signal re 94.9 0.042 1.4E-06 56.9 7.3 37 362-398 102-141 (320)
288 3lnc_A Guanylate kinase, GMP k 94.9 0.013 4.3E-07 56.9 3.1 27 363-389 25-52 (231)
289 4a82_A Cystic fibrosis transme 94.9 0.095 3.2E-06 58.4 10.6 28 362-389 364-391 (578)
290 1odf_A YGR205W, hypothetical 3 94.9 0.013 4.4E-07 59.9 3.2 29 362-390 28-56 (290)
291 1ls1_A Signal recognition part 94.8 0.076 2.6E-06 54.1 8.9 72 364-435 97-191 (295)
292 2xxa_A Signal recognition part 94.8 0.044 1.5E-06 59.2 7.3 72 363-434 98-193 (433)
293 1z6g_A Guanylate kinase; struc 94.8 0.016 5.3E-07 56.3 3.4 28 362-389 20-47 (218)
294 2j9r_A Thymidine kinase; TK1, 94.7 0.024 8.2E-07 55.7 4.7 30 368-397 31-63 (214)
295 3e70_C DPA, signal recognition 94.7 0.048 1.7E-06 56.7 7.2 27 363-389 127-153 (328)
296 2gza_A Type IV secretion syste 94.7 0.013 4.5E-07 61.5 3.0 72 363-434 173-262 (361)
297 4f4c_A Multidrug resistance pr 94.7 0.11 3.8E-06 63.5 11.4 30 361-390 440-469 (1321)
298 1znw_A Guanylate kinase, GMP k 94.7 0.018 6.3E-07 54.9 3.7 28 363-390 18-45 (207)
299 2j37_W Signal recognition part 94.7 0.041 1.4E-06 60.6 6.8 36 363-398 99-137 (504)
300 3p32_A Probable GTPase RV1496/ 94.6 0.12 3.9E-06 54.0 9.9 34 364-397 78-114 (355)
301 1htw_A HI0065; nucleotide-bind 94.6 0.021 7.1E-07 53.1 3.7 28 362-389 30-57 (158)
302 2j0s_A ATP-dependent RNA helic 94.6 0.12 4.1E-06 53.7 10.0 56 328-385 36-94 (410)
303 2ged_A SR-beta, signal recogni 94.6 0.031 1.1E-06 51.6 4.9 27 363-389 46-72 (193)
304 3gmt_A Adenylate kinase; ssgci 94.5 0.017 5.9E-07 57.3 3.1 30 367-396 10-39 (230)
305 3b9q_A Chloroplast SRP recepto 94.5 0.027 9.3E-07 57.8 4.6 28 362-389 97-124 (302)
306 1bif_A 6-phosphofructo-2-kinas 94.5 0.075 2.6E-06 57.6 8.3 38 364-401 38-78 (469)
307 3thx_A DNA mismatch repair pro 94.5 0.078 2.7E-06 62.5 9.0 24 364-387 661-684 (934)
308 1wb9_A DNA mismatch repair pro 94.4 0.12 4.2E-06 59.9 10.5 25 364-388 606-630 (800)
309 2v9p_A Replication protein E1; 94.4 0.023 8E-07 58.6 4.0 30 360-389 121-150 (305)
310 3ber_A Probable ATP-dependent 94.4 0.17 5.9E-06 49.6 10.1 55 327-383 41-98 (249)
311 3qf4_B Uncharacterized ABC tra 94.4 0.14 4.9E-06 57.2 10.6 29 361-389 377-405 (598)
312 1xti_A Probable ATP-dependent 94.4 0.25 8.6E-06 50.6 11.7 56 329-386 8-66 (391)
313 2jeo_A Uridine-cytidine kinase 94.4 0.02 7E-07 56.2 3.3 29 364-392 24-52 (245)
314 1sky_E F1-ATPase, F1-ATP synth 94.3 0.049 1.7E-06 59.5 6.4 24 366-389 152-175 (473)
315 1fuu_A Yeast initiation factor 94.3 0.19 6.6E-06 51.5 10.5 55 327-383 19-76 (394)
316 1a7j_A Phosphoribulokinase; tr 94.2 0.018 6.2E-07 58.7 2.5 38 365-402 5-45 (290)
317 2zj8_A DNA helicase, putative 94.2 0.11 3.7E-06 59.1 9.3 20 364-383 38-57 (720)
318 3sqw_A ATP-dependent RNA helic 94.2 0.13 4.6E-06 56.8 9.7 19 364-382 59-77 (579)
319 3hdt_A Putative kinase; struct 94.2 0.024 8.1E-07 55.8 3.2 30 366-395 15-44 (223)
320 1c9k_A COBU, adenosylcobinamid 94.1 0.029 1E-06 53.6 3.7 32 368-400 2-33 (180)
321 3oiy_A Reverse gyrase helicase 94.1 0.063 2.1E-06 56.3 6.6 21 365-385 36-56 (414)
322 2z0m_A 337AA long hypothetical 94.1 0.15 5.2E-06 50.9 9.2 33 366-398 32-64 (337)
323 3qf4_A ABC transporter, ATP-bi 94.1 0.1 3.5E-06 58.3 8.6 28 362-389 366-393 (587)
324 1m8p_A Sulfate adenylyltransfe 94.1 0.074 2.5E-06 59.4 7.4 39 364-402 395-437 (573)
325 1gtv_A TMK, thymidylate kinase 94.1 0.011 3.8E-07 56.0 0.7 24 367-390 2-25 (214)
326 2fwr_A DNA repair protein RAD2 94.1 0.11 3.6E-06 55.6 8.4 33 367-399 110-142 (472)
327 1s2m_A Putative ATP-dependent 94.0 0.25 8.4E-06 51.0 10.9 58 327-386 19-79 (400)
328 2va8_A SSO2462, SKI2-type heli 94.0 0.15 5E-06 57.9 9.7 55 328-384 7-65 (715)
329 3eiq_A Eukaryotic initiation f 94.0 0.12 4.3E-06 53.4 8.5 54 329-384 40-96 (414)
330 2og2_A Putative signal recogni 93.9 0.036 1.2E-06 58.4 4.3 28 362-389 154-181 (359)
331 1sq5_A Pantothenate kinase; P- 93.9 0.028 9.5E-07 57.5 3.3 28 363-390 78-105 (308)
332 4eaq_A DTMP kinase, thymidylat 93.9 0.032 1.1E-06 54.7 3.5 33 364-396 25-59 (229)
333 1j8m_F SRP54, signal recogniti 93.9 0.065 2.2E-06 54.8 5.9 71 365-435 98-191 (297)
334 3ly5_A ATP-dependent RNA helic 93.7 0.27 9.2E-06 48.6 9.9 18 366-383 92-109 (262)
335 3i5x_A ATP-dependent RNA helic 93.6 0.24 8.3E-06 54.1 10.4 18 364-381 110-127 (563)
336 2oxc_A Probable ATP-dependent 93.6 0.32 1.1E-05 46.8 10.1 54 327-382 22-78 (230)
337 2orv_A Thymidine kinase; TP4A 93.6 0.17 5.7E-06 50.3 8.1 92 365-480 19-125 (234)
338 1wp9_A ATP-dependent RNA helic 93.6 0.15 5E-06 53.2 8.2 32 367-398 25-60 (494)
339 1gm5_A RECG; helicase, replica 93.5 0.31 1.1E-05 56.4 11.3 52 338-398 371-425 (780)
340 1np6_A Molybdopterin-guanine d 93.4 0.043 1.5E-06 51.8 3.5 26 364-389 5-30 (174)
341 1ewq_A DNA mismatch repair pro 93.4 0.21 7.1E-06 57.7 9.7 24 365-388 576-599 (765)
342 3j16_B RLI1P; ribosome recycli 93.3 0.23 8E-06 55.8 9.7 26 364-389 102-127 (608)
343 1p5z_B DCK, deoxycytidine kina 93.3 0.023 7.7E-07 56.4 1.3 31 364-394 23-54 (263)
344 2ffh_A Protein (FFH); SRP54, s 93.3 0.23 7.8E-06 53.5 9.2 71 364-434 97-190 (425)
345 3tqc_A Pantothenate kinase; bi 93.3 0.077 2.6E-06 55.0 5.4 28 363-390 90-117 (321)
346 3aez_A Pantothenate kinase; tr 93.2 0.047 1.6E-06 56.3 3.5 27 363-389 88-114 (312)
347 1rj9_A FTSY, signal recognitio 93.2 0.051 1.8E-06 55.8 3.8 26 364-389 101-126 (304)
348 3cr8_A Sulfate adenylyltranfer 93.1 0.094 3.2E-06 58.4 6.1 40 364-403 368-411 (552)
349 2p6r_A Afuhel308 helicase; pro 93.1 0.15 5.2E-06 57.7 8.0 20 365-384 40-59 (702)
350 2ocp_A DGK, deoxyguanosine kin 93.1 0.053 1.8E-06 52.9 3.6 28 365-392 2-30 (241)
351 4f4c_A Multidrug resistance pr 93.1 0.079 2.7E-06 64.8 5.8 28 362-389 1102-1129(1321)
352 3tif_A Uncharacterized ABC tra 93.0 0.034 1.2E-06 54.8 2.1 28 362-389 28-55 (235)
353 2cbz_A Multidrug resistance-as 93.0 0.035 1.2E-06 54.8 2.1 28 362-389 28-55 (237)
354 1rif_A DAR protein, DNA helica 92.9 0.42 1.4E-05 47.5 10.0 32 367-398 130-165 (282)
355 3fmo_B ATP-dependent RNA helic 92.9 0.39 1.3E-05 48.7 9.8 53 328-382 91-148 (300)
356 4b4t_J 26S protease regulatory 92.8 0.055 1.9E-06 58.0 3.4 54 242-295 289-371 (405)
357 2qm8_A GTPase/ATPase; G protei 92.8 0.16 5.3E-06 52.8 6.8 27 363-389 53-79 (337)
358 2pcj_A ABC transporter, lipopr 92.7 0.045 1.6E-06 53.5 2.5 27 363-389 28-54 (224)
359 3t1o_A Gliding protein MGLA; G 92.7 0.17 5.6E-06 46.4 6.2 24 366-389 15-38 (198)
360 3tbk_A RIG-I helicase domain; 92.7 0.75 2.6E-05 49.3 12.3 23 366-388 20-42 (555)
361 2onk_A Molybdate/tungstate ABC 92.6 0.06 2.1E-06 53.3 3.3 27 362-389 22-48 (240)
362 1b0u_A Histidine permease; ABC 92.6 0.048 1.6E-06 54.7 2.6 27 363-389 30-56 (262)
363 3vkw_A Replicase large subunit 92.6 0.13 4.4E-06 55.8 6.1 25 364-388 160-184 (446)
364 1xjc_A MOBB protein homolog; s 92.6 0.066 2.3E-06 50.5 3.3 33 365-397 4-39 (169)
365 3kta_A Chromosome segregation 92.5 0.072 2.5E-06 49.2 3.4 24 367-390 28-51 (182)
366 4a2p_A RIG-I, retinoic acid in 92.5 0.63 2.2E-05 50.0 11.4 23 366-388 23-45 (556)
367 2zu0_C Probable ATP-dependent 92.4 0.062 2.1E-06 54.0 3.1 27 362-388 43-69 (267)
368 1mv5_A LMRA, multidrug resista 92.4 0.042 1.4E-06 54.3 1.8 27 363-389 26-52 (243)
369 2fh5_B SR-beta, signal recogni 92.4 0.4 1.4E-05 44.9 8.6 24 365-388 7-30 (214)
370 3b85_A Phosphate starvation-in 92.4 0.045 1.5E-06 53.0 2.0 23 366-388 23-45 (208)
371 2o8b_B DNA mismatch repair pro 92.4 0.4 1.4E-05 57.1 10.4 21 365-385 789-809 (1022)
372 1nrj_B SR-beta, signal recogni 92.4 0.077 2.6E-06 50.1 3.6 26 364-389 11-36 (218)
373 1yrb_A ATP(GTP)binding protein 92.4 0.33 1.1E-05 47.2 8.2 34 364-397 13-48 (262)
374 2ghi_A Transport protein; mult 92.3 0.048 1.6E-06 54.6 2.1 28 362-389 43-70 (260)
375 3fht_A ATP-dependent RNA helic 92.3 0.57 2E-05 48.2 10.4 54 328-383 24-82 (412)
376 3q72_A GTP-binding protein RAD 92.3 0.083 2.8E-06 47.1 3.5 21 367-387 4-24 (166)
377 1g6h_A High-affinity branched- 92.2 0.044 1.5E-06 54.7 1.7 27 363-389 31-57 (257)
378 2f9l_A RAB11B, member RAS onco 92.2 0.069 2.3E-06 50.0 3.0 22 367-388 7-28 (199)
379 2gks_A Bifunctional SAT/APS ki 92.2 0.24 8.1E-06 55.0 7.7 39 365-403 372-413 (546)
380 2ixe_A Antigen peptide transpo 92.2 0.051 1.7E-06 54.8 2.1 28 362-389 42-69 (271)
381 3fmp_B ATP-dependent RNA helic 92.2 0.38 1.3E-05 51.4 9.2 53 328-382 91-148 (479)
382 3tqf_A HPR(Ser) kinase; transf 92.2 0.065 2.2E-06 51.2 2.7 28 365-393 16-43 (181)
383 2olj_A Amino acid ABC transpor 92.2 0.059 2E-06 54.2 2.6 28 362-389 47-74 (263)
384 2d2e_A SUFC protein; ABC-ATPas 92.1 0.074 2.5E-06 52.8 3.2 26 363-388 27-52 (250)
385 1lw7_A Transcriptional regulat 92.1 0.068 2.3E-06 55.8 3.1 28 365-392 170-197 (365)
386 2pze_A Cystic fibrosis transme 92.1 0.059 2E-06 52.8 2.4 27 363-389 32-58 (229)
387 1oix_A RAS-related protein RAB 92.1 0.069 2.4E-06 49.9 2.8 23 367-389 31-53 (191)
388 1sgw_A Putative ABC transporte 92.1 0.065 2.2E-06 52.2 2.7 27 363-389 33-59 (214)
389 2dyk_A GTP-binding protein; GT 92.1 0.075 2.6E-06 47.1 2.9 22 367-388 3-24 (161)
390 3fvq_A Fe(3+) IONS import ATP- 92.0 0.059 2E-06 56.8 2.4 27 363-389 28-54 (359)
391 2ff7_A Alpha-hemolysin translo 92.0 0.053 1.8E-06 53.9 2.0 27 363-389 33-59 (247)
392 1ji0_A ABC transporter; ATP bi 92.0 0.048 1.6E-06 53.9 1.6 27 363-389 30-56 (240)
393 3sop_A Neuronal-specific septi 92.0 0.068 2.3E-06 53.8 2.8 23 367-389 4-26 (270)
394 3ice_A Transcription terminati 92.0 0.3 1E-05 52.2 7.8 27 363-389 172-198 (422)
395 1z2a_A RAS-related protein RAB 91.9 0.072 2.4E-06 47.5 2.6 23 366-388 6-28 (168)
396 1vpl_A ABC transporter, ATP-bi 91.9 0.066 2.3E-06 53.6 2.6 28 362-389 38-65 (256)
397 1g8f_A Sulfate adenylyltransfe 91.9 0.092 3.1E-06 57.9 3.9 27 365-391 395-421 (511)
398 3gfo_A Cobalt import ATP-bindi 91.9 0.051 1.7E-06 55.1 1.7 27 363-389 32-58 (275)
399 2yz2_A Putative ABC transporte 91.9 0.065 2.2E-06 53.8 2.5 28 362-389 30-57 (266)
400 4edh_A DTMP kinase, thymidylat 91.8 0.13 4.4E-06 50.0 4.5 33 365-397 6-41 (213)
401 4i1u_A Dephospho-COA kinase; s 91.8 0.091 3.1E-06 51.3 3.4 38 366-406 10-47 (210)
402 3h1t_A Type I site-specific re 91.8 0.25 8.4E-06 54.6 7.3 45 334-388 177-221 (590)
403 3l9o_A ATP-dependent RNA helic 91.8 0.32 1.1E-05 58.4 8.7 33 366-398 200-235 (1108)
404 3dz8_A RAS-related protein RAB 91.7 0.22 7.5E-06 46.0 5.8 23 367-389 25-47 (191)
405 2qi9_C Vitamin B12 import ATP- 91.7 0.076 2.6E-06 52.9 2.8 27 363-389 24-50 (249)
406 2it1_A 362AA long hypothetical 91.7 0.072 2.5E-06 56.2 2.7 27 363-389 27-53 (362)
407 3d31_A Sulfate/molybdate ABC t 91.7 0.063 2.2E-06 56.3 2.3 27 363-389 24-50 (348)
408 2yyz_A Sugar ABC transporter, 91.7 0.072 2.5E-06 56.2 2.7 27 363-389 27-53 (359)
409 2p67_A LAO/AO transport system 91.7 0.28 9.7E-06 50.8 7.2 27 363-389 54-80 (341)
410 3rlf_A Maltose/maltodextrin im 91.7 0.074 2.5E-06 56.6 2.7 27 363-389 27-53 (381)
411 1v43_A Sugar-binding transport 91.6 0.075 2.5E-06 56.3 2.7 27 363-389 35-61 (372)
412 4g1u_C Hemin import ATP-bindin 91.6 0.075 2.6E-06 53.5 2.6 27 363-389 35-61 (266)
413 2lkc_A Translation initiation 91.6 0.12 3.9E-06 46.8 3.6 25 364-388 7-31 (178)
414 2f1r_A Molybdopterin-guanine d 91.5 0.061 2.1E-06 50.6 1.7 24 366-389 3-26 (171)
415 2ihy_A ABC transporter, ATP-bi 91.5 0.065 2.2E-06 54.3 2.0 27 363-389 45-71 (279)
416 3dkp_A Probable ATP-dependent 91.5 0.68 2.3E-05 44.7 9.3 17 366-382 67-83 (245)
417 2wsm_A Hydrogenase expression/ 91.5 0.14 4.9E-06 48.4 4.3 24 366-389 31-54 (221)
418 1kao_A RAP2A; GTP-binding prot 91.5 0.1 3.6E-06 46.1 3.1 22 367-388 5-26 (167)
419 2f7s_A C25KG, RAS-related prot 91.4 0.68 2.3E-05 43.4 9.0 22 367-388 27-48 (217)
420 1z47_A CYSA, putative ABC-tran 91.4 0.069 2.4E-06 56.2 2.2 26 364-389 40-65 (355)
421 2nq2_C Hypothetical ABC transp 91.4 0.085 2.9E-06 52.6 2.7 27 363-389 29-55 (253)
422 1svi_A GTP-binding protein YSX 91.4 0.067 2.3E-06 49.4 1.8 25 364-388 22-46 (195)
423 2eyq_A TRCF, transcription-rep 91.4 0.65 2.2E-05 56.0 10.8 53 337-398 605-660 (1151)
424 2ce2_X GTPase HRAS; signaling 91.4 0.099 3.4E-06 46.1 2.9 22 367-388 5-26 (166)
425 4b4t_H 26S protease regulatory 91.3 0.078 2.7E-06 57.8 2.5 54 242-295 350-432 (467)
426 2zej_A Dardarin, leucine-rich 91.3 0.077 2.6E-06 49.0 2.1 22 367-388 4-25 (184)
427 2wji_A Ferrous iron transport 91.3 0.091 3.1E-06 47.6 2.6 22 367-388 5-26 (165)
428 1u8z_A RAS-related protein RAL 91.2 0.11 3.8E-06 46.0 3.1 23 366-388 5-27 (168)
429 3e2i_A Thymidine kinase; Zn-bi 91.2 0.053 1.8E-06 53.4 1.0 31 367-397 30-63 (219)
430 1ek0_A Protein (GTP-binding pr 91.2 0.11 3.8E-06 46.2 3.1 22 367-388 5-26 (170)
431 1z0j_A RAB-22, RAS-related pro 91.2 0.11 3.8E-06 46.3 3.0 24 366-389 7-30 (170)
432 3v9p_A DTMP kinase, thymidylat 91.2 0.15 5E-06 50.3 4.2 33 365-397 25-64 (227)
433 2nzj_A GTP-binding protein REM 91.1 0.097 3.3E-06 47.0 2.6 23 366-388 5-27 (175)
434 1g29_1 MALK, maltose transport 91.1 0.076 2.6E-06 56.2 2.2 26 364-389 28-53 (372)
435 3fho_A ATP-dependent RNA helic 91.1 0.66 2.3E-05 50.4 9.7 19 365-383 158-176 (508)
436 3lv8_A DTMP kinase, thymidylat 91.1 0.11 3.8E-06 51.5 3.2 29 364-392 26-57 (236)
437 2v6i_A RNA helicase; membrane, 91.1 0.3 1E-05 52.2 6.8 21 366-386 3-24 (431)
438 1oxx_K GLCV, glucose, ABC tran 91.0 0.065 2.2E-06 56.3 1.5 27 363-389 29-55 (353)
439 2gk6_A Regulator of nonsense t 91.0 0.11 3.6E-06 58.5 3.3 22 367-388 197-218 (624)
440 3tmk_A Thymidylate kinase; pho 91.0 0.19 6.5E-06 49.1 4.7 31 365-395 5-35 (216)
441 1wms_A RAB-9, RAB9, RAS-relate 91.0 0.12 4.2E-06 46.6 3.1 23 366-388 8-30 (177)
442 2erx_A GTP-binding protein DI- 90.9 0.11 3.8E-06 46.3 2.8 22 367-388 5-26 (172)
443 1upt_A ARL1, ADP-ribosylation 90.9 0.13 4.6E-06 45.9 3.3 24 365-388 7-30 (171)
444 1z08_A RAS-related protein RAB 90.9 0.12 4.1E-06 46.1 3.0 23 366-388 7-29 (170)
445 4ddu_A Reverse gyrase; topoiso 90.8 0.39 1.3E-05 57.7 8.1 20 366-385 94-113 (1104)
446 1ky3_A GTP-binding protein YPT 90.8 0.13 4.4E-06 46.4 3.1 24 365-388 8-31 (182)
447 3gd7_A Fusion complex of cysti 90.8 0.092 3.1E-06 55.9 2.4 27 362-388 44-70 (390)
448 3lxw_A GTPase IMAP family memb 90.8 0.26 8.8E-06 48.5 5.5 24 365-388 21-44 (247)
449 1g16_A RAS-related protein SEC 90.8 0.12 4.1E-06 46.1 2.9 22 367-388 5-26 (170)
450 2pjz_A Hypothetical protein ST 90.8 0.092 3.1E-06 52.8 2.3 25 365-389 30-54 (263)
451 2wjg_A FEOB, ferrous iron tran 90.7 0.11 3.9E-06 47.4 2.7 23 366-388 8-30 (188)
452 2gj8_A MNME, tRNA modification 90.7 0.1 3.6E-06 47.8 2.4 24 365-388 4-27 (172)
453 2oca_A DAR protein, ATP-depend 90.7 1.2 4.2E-05 47.8 11.2 23 366-388 129-151 (510)
454 2hxs_A RAB-26, RAS-related pro 90.7 0.13 4.5E-06 46.3 3.1 23 366-388 7-29 (178)
455 1r2q_A RAS-related protein RAB 90.6 0.14 4.7E-06 45.6 3.1 23 366-388 7-29 (170)
456 1pui_A ENGB, probable GTP-bind 90.6 0.058 2E-06 50.6 0.6 28 362-389 23-50 (210)
457 2bbs_A Cystic fibrosis transme 90.6 0.097 3.3E-06 53.4 2.3 28 362-389 61-88 (290)
458 3q85_A GTP-binding protein REM 90.6 0.12 4E-06 46.3 2.6 21 367-387 4-24 (169)
459 3bc1_A RAS-related protein RAB 90.6 0.14 4.7E-06 46.7 3.1 23 366-388 12-34 (195)
460 1c1y_A RAS-related protein RAP 90.5 0.14 4.9E-06 45.4 3.1 22 367-388 5-26 (167)
461 2npi_A Protein CLP1; CLP1-PCF1 90.5 0.12 4.1E-06 56.2 3.0 28 362-389 135-162 (460)
462 2atv_A RERG, RAS-like estrogen 90.4 0.15 5E-06 47.4 3.2 25 364-388 27-51 (196)
463 3clv_A RAB5 protein, putative; 90.4 0.15 5.1E-06 46.6 3.2 24 365-388 7-30 (208)
464 2db3_A ATP-dependent RNA helic 90.4 0.74 2.5E-05 48.8 9.1 52 328-381 55-109 (434)
465 1r8s_A ADP-ribosylation factor 90.4 0.15 5.1E-06 45.3 3.1 22 367-388 2-23 (164)
466 3g5u_A MCG1178, multidrug resi 90.2 0.75 2.6E-05 56.1 10.0 28 362-389 413-440 (1284)
467 2y8e_A RAB-protein 6, GH09086P 90.2 0.14 4.7E-06 46.1 2.7 23 366-388 15-37 (179)
468 4dsu_A GTPase KRAS, isoform 2B 90.2 0.15 5.2E-06 46.4 3.0 24 366-389 5-28 (189)
469 3cph_A RAS-related protein SEC 90.2 0.15 5E-06 47.7 3.0 24 365-388 20-43 (213)
470 1z0f_A RAB14, member RAS oncog 90.1 0.16 5.4E-06 45.7 3.1 23 366-388 16-38 (179)
471 4b4t_I 26S protease regulatory 90.1 0.083 2.9E-06 57.0 1.4 55 241-295 322-405 (437)
472 3ux8_A Excinuclease ABC, A sub 90.0 0.45 1.5E-05 53.8 7.4 24 362-385 345-368 (670)
473 2fn4_A P23, RAS-related protei 90.0 0.15 5E-06 46.0 2.8 23 366-388 10-32 (181)
474 2hf9_A Probable hydrogenase ni 90.0 0.27 9.3E-06 46.6 4.8 25 365-389 38-62 (226)
475 4ag6_A VIRB4 ATPase, type IV s 90.0 0.25 8.7E-06 51.8 4.9 34 364-397 34-70 (392)
476 2a9k_A RAS-related protein RAL 89.9 0.17 5.7E-06 45.9 3.1 23 366-388 19-41 (187)
477 3con_A GTPase NRAS; structural 89.9 0.16 5.5E-06 46.6 3.0 23 366-388 22-44 (190)
478 2efe_B Small GTP-binding prote 89.9 0.16 5.6E-06 45.9 3.0 23 366-388 13-35 (181)
479 4a2q_A RIG-I, retinoic acid in 89.8 1.8 6.2E-05 49.7 12.3 33 366-398 264-304 (797)
480 2oil_A CATX-8, RAS-related pro 89.8 0.17 5.7E-06 46.7 3.0 23 366-388 26-48 (193)
481 4b4t_M 26S protease regulatory 89.7 0.096 3.3E-06 56.6 1.4 55 242-296 322-405 (434)
482 3ld9_A DTMP kinase, thymidylat 89.6 0.18 6.1E-06 49.6 3.2 32 364-395 20-55 (223)
483 1m7b_A RND3/RHOE small GTP-bin 89.6 0.16 5.5E-06 46.6 2.7 24 365-388 7-30 (184)
484 2vp4_A Deoxynucleoside kinase; 89.6 0.12 4.2E-06 50.1 2.0 29 365-394 20-48 (230)
485 2bme_A RAB4A, RAS-related prot 89.6 0.16 5.6E-06 46.2 2.7 23 366-388 11-33 (186)
486 3rc3_A ATP-dependent RNA helic 89.5 0.5 1.7E-05 53.8 7.2 25 364-388 154-178 (677)
487 3tw8_B RAS-related protein RAB 89.5 0.16 5.6E-06 45.6 2.7 23 366-388 10-32 (181)
488 2g6b_A RAS-related protein RAB 89.5 0.19 6.5E-06 45.4 3.1 24 365-388 10-33 (180)
489 3pqc_A Probable GTP-binding pr 89.5 0.18 6.2E-06 46.0 3.0 23 366-388 24-46 (195)
490 3bwd_D RAC-like GTP-binding pr 89.5 0.22 7.5E-06 45.0 3.5 24 365-388 8-31 (182)
491 3tui_C Methionine import ATP-b 89.5 0.15 5.2E-06 53.8 2.7 27 363-389 52-78 (366)
492 1ksh_A ARF-like protein 2; sma 89.4 0.15 5.2E-06 46.6 2.4 25 364-388 17-41 (186)
493 2b6h_A ADP-ribosylation factor 89.4 0.2 6.7E-06 46.7 3.2 25 363-387 27-51 (192)
494 2p5s_A RAS and EF-hand domain 89.4 0.18 6.3E-06 46.9 3.0 25 364-388 27-51 (199)
495 1moz_A ARL1, ADP-ribosylation 89.4 0.17 5.8E-06 46.0 2.7 25 363-387 16-40 (183)
496 1m2o_B GTP-binding protein SAR 89.3 0.19 6.4E-06 46.8 3.0 23 366-388 24-46 (190)
497 3kkq_A RAS-related protein M-R 89.3 0.2 6.8E-06 45.6 3.1 23 366-388 19-41 (183)
498 1mh1_A RAC1; GTP-binding, GTPa 89.3 0.2 6.8E-06 45.4 3.1 22 367-388 7-28 (186)
499 1nij_A Hypothetical protein YJ 89.3 0.21 7.2E-06 51.2 3.6 23 367-389 6-28 (318)
500 2cxx_A Probable GTP-binding pr 89.3 0.15 5E-06 46.6 2.1 22 367-388 3-24 (190)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-53 Score=454.80 Aligned_cols=256 Identities=38% Similarity=0.643 Sum_probs=241.4
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
...+.|+++|+||+|++++|++|++++.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 45677999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
+.++|+|++++.++.+|..|+..+||||||||||++++.|.... .+++.+..+++++||++||++....+|+||+|||+
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC-CCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 99999999999999999999999999999999999998886432 34456778999999999999999999999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007591 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 481 pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
|+.||+||+||||||+.|+|++||.++|.+||+.|+++ +++.+++|++.||+.|+||||+||.++|++|++.|.++++
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~ 374 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK--MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR 374 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999975 5677899999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcchh
Q 007591 561 VVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 561 ~~It~~d~~~Al~rvi~g~~ 580 (597)
..|+++||..|+++++....
T Consensus 375 ~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 375 IHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp SBCCHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 99999999999999976543
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-52 Score=450.15 Aligned_cols=267 Identities=40% Similarity=0.647 Sum_probs=242.6
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||+||+|+|++++++|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 4578999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.++|+|++++.++.+|..|+..+||||||||+|+++..|.... .+......++++++|.+||++....+|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcC-CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 9999999999999999999999999999999999998886532 244567788999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.||+||+||||||+.|+|++|+.++|.+||+.|+++ +++..+++++.||+.|+||||+||.++|++|++.|.++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT--SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999965 57788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchhhhccCCCHHHHhHhhcC
Q 007591 562 VVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~g~~k~~~~ls~~ek~ivayh 597 (597)
.|+++||..|+++++.+.++.+. ..+...||
T Consensus 437 ~it~~Df~~Al~kV~~g~~k~s~-----~~~y~~~n 467 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGYKKFSS-----TSRYMQYN 467 (467)
T ss_dssp SBCHHHHHHHHHHHHHHHCC----------------
T ss_pred ccCHHHHHHHHHHHhcCcccchh-----HHHHHhhC
Confidence 99999999999999988776432 23455665
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-52 Score=445.84 Aligned_cols=256 Identities=39% Similarity=0.665 Sum_probs=241.5
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++|+|+|++++++|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 4678999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.++|+|++++.++.+|..|+..+||||||||||+++..|.... ...+.+..+++++||++||++....+|+||+|||+|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCC-CCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 9999999999999999999999999999999999999886542 234567789999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.||+||+||||||+.|+|++||.++|.+||+.|+++ +++.+++|++.||..|+||||+||.++|++|++.|.++++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~ 409 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK--MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM 409 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT--SCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC--CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999975 57788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchhh
Q 007591 562 VVEKIDFIHAVERSIAGIEK 581 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~g~~k 581 (597)
.|+++||.+|+++++.+..+
T Consensus 410 ~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 410 QVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp CBCHHHHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHhCCCCh
Confidence 99999999999999876443
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-51 Score=441.56 Aligned_cols=253 Identities=41% Similarity=0.656 Sum_probs=238.6
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||++|+|+|++++++|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 4577999999999999999999998877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.++|+|++++.++.+|..|+..+||||||||+|+++..|.... ..+..+..+++++||++||++.+..+|+||+|||+|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCC-CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999998886542 234567788999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.||+||+||||||+.|+|++||.++|.+||+.|+++ +++.++++++.||+.|+||||+||.++|++|++.|.++++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~ 408 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK--MTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS 408 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH--SCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC--CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999976 46778999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcc
Q 007591 562 VVEKIDFIHAVERSIAG 578 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~g 578 (597)
.|+++||.+|++++.+.
T Consensus 409 ~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 409 SVKHEDFVEGISEVQAR 425 (434)
T ss_dssp SBCHHHHHHHHHSCSSS
T ss_pred CcCHHHHHHHHHHHhCC
Confidence 99999999999988654
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-50 Score=438.44 Aligned_cols=254 Identities=42% Similarity=0.668 Sum_probs=239.3
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
...+.|+++|+||+|++++|++|++++.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 34567999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
+.++|+|++++.++.+|..|+..+||||||||||+++..|.... ...+.+..+++++||.+||++....+|+||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCC-CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999998886432 23456778899999999999999999999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007591 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 481 pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
|+.|||||+||||||+.|+|++||.++|.+||+.|+++ +++..++|++.||+.|+||||+||.++|++|++.|.++++
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK--VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT--SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC--CCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999976 4677889999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcc
Q 007591 561 VVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 561 ~~It~~d~~~Al~rvi~g 578 (597)
..|+++||..|++++...
T Consensus 408 ~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp SSBCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998654
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-50 Score=432.00 Aligned_cols=252 Identities=44% Similarity=0.660 Sum_probs=237.3
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 4567899999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.++|+|+++..++.+|..|+..+||||||||+|+++..|.... ...+.+..+++++||++||++....+|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999998886432 234567789999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEec-CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 007591 482 DVLDPALRRPGRFDRVVMVE-TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~-~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~ 560 (597)
+.||+||+||||||+.|+|+ +|+.++|.+||+.|+++ +++.+++|++.||..|+||||+||.++|++|++.|.++++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~--~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS--SCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC--CCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999996 89999999999999976 4677899999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhc
Q 007591 561 VVVEKIDFIHAVERSIA 577 (597)
Q Consensus 561 ~~It~~d~~~Al~rvi~ 577 (597)
..|+++||.+|+.+++.
T Consensus 400 ~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVK 416 (428)
T ss_dssp SSBCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhC
Confidence 99999999999988753
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.7e-51 Score=468.71 Aligned_cols=336 Identities=34% Similarity=0.632 Sum_probs=247.8
Q ss_pred ceEEEecCCCCCchhHHH--HHhCCceeccCCCC---------------------------CcChHHHHHHHHHHHHHHH
Q 007591 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+++|+++++ +|++.++++.|+.. +.||.+++|..+|-.|.+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~ 421 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 468999999999998875 89999999988752 6899999999999999998
Q ss_pred Hhhhccccc-ccc-------------cccccc--ccccCCCCCCccccCCCCcCcccccCChHHHHHHHHHHHH-hcChh
Q 007591 293 GLLHRFPVS-FSQ-------------TAGQVG--HRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPD 355 (597)
Q Consensus 293 ~~~~~~~~~-~~~-------------~~~~~~--~~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~ 355 (597)
++.+..... ... ...... .....++.......+.|+++|+||+|++++|++|++++.+ +++|+
T Consensus 422 A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~ 501 (806)
T 3cf2_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501 (806)
T ss_dssp HHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSG
T ss_pred HHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHH
Confidence 877643211 000 000000 0111222223344567899999999999999999999998 89999
Q ss_pred HHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 356 KYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 356 ~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
.|.++|.++|+|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|+.|+..+||||||||||+
T Consensus 502 ~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp GGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred HHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 007591 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (597)
Q Consensus 436 L~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~ 515 (597)
++..|+... ...+...++++++||++||++....+|+||+|||+|+.||+|++||||||+.|+|++||.++|.+||+.+
T Consensus 582 l~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 582 IAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp CC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred HhhccCCCC-CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHH
Confidence 998886421 1234566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-------------------------CccccHHHHHH
Q 007591 516 VSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-------------------------KVVVEKIDFIH 570 (597)
Q Consensus 516 l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-------------------------~~~It~~d~~~ 570 (597)
+++ .++..++|++.||+.|+||||+||.++|++|++.|.++. ...|+++||.+
T Consensus 661 l~~--~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~ 738 (806)
T 3cf2_A 661 LRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEE 738 (806)
T ss_dssp SSC--C--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTT
T ss_pred hcC--CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHH
Confidence 965 567789999999999999999999999999999998752 12588999999
Q ss_pred HHHHHhcchh
Q 007591 571 AVERSIAGIE 580 (597)
Q Consensus 571 Al~rvi~g~~ 580 (597)
|++++.+...
T Consensus 739 al~~~~pSvs 748 (806)
T 3cf2_A 739 AMRFARRSVS 748 (806)
T ss_dssp TC--------
T ss_pred HHHhCCCCCC
Confidence 9998876543
No 8
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=5.4e-44 Score=392.11 Aligned_cols=269 Identities=58% Similarity=0.923 Sum_probs=241.9
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
.+.++|+||+|+++++++|++++.+++++..|..+|.+.|+++||+||||||||+||+++|+++++||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC
Q 007591 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld 485 (597)
+|.++.+++.+|..|+...||||||||||.++..++... .+.+++..+++++|+.+|+++..+.+++||++||+++.||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~-~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc-CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999999999999999999999999999999998776432 3456788899999999999988888999999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccH
Q 007591 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~ 565 (597)
++++|||||++.+.+++|+.++|.+|++.++++. ++.+++++..++..++|++|+||.++|++|++.|.+++...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC--CCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecH
Confidence 9999999999999999999999999999999764 66788899999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHhcchhhhccCCCHHHHhHhhcC
Q 007591 566 IDFIHAVERSIAGIEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 566 ~d~~~Al~rvi~g~~k~~~~ls~~ek~ivayh 597 (597)
+||.+|+++++.+.+++...+++.|+..+|||
T Consensus 247 ~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~ 278 (476)
T 2ce7_A 247 KDFEEAIDRVIAGPARKSLLISPAEKRIIAYH 278 (476)
T ss_dssp HHHHHHHHHHC--------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccchhhhcchhhhhHHH
Confidence 99999999999999888889999999999998
No 9
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.4e-42 Score=380.98 Aligned_cols=273 Identities=55% Similarity=0.871 Sum_probs=253.2
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
...+.++++|+||+|+++++++|++++.++.++..|..++.+.|+|+||+||||||||+||+++|++++.+|+.++++++
T Consensus 21 ~~~~~~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~ 100 (499)
T 2dhr_A 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 100 (499)
T ss_dssp EECSCCCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eeccCCCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence 33333889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.+.++|..+..++.+|+.+....|||+||||||.++..++... ...+++.++++++++.+|+++.....+++|++||+|
T Consensus 101 ~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~-~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p 179 (499)
T 2dhr_A 101 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 179 (499)
T ss_dssp TSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST-TTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCG
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc-CCCcHHHHHHHHHHHHHhcccccCccEEEEEecCCh
Confidence 9999999999999999999888899999999999987765321 235678889999999999999888889999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~ 561 (597)
+.||++++||||||+++.++.|+.++|.+||+.+++. +++.+++++..+|..++|++|+||.++|++|++.|.+++..
T Consensus 180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~ 257 (499)
T 2dhr_A 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRR 257 (499)
T ss_dssp GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCS
T ss_pred hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999998854 57788899999999999999999999999999999988888
Q ss_pred cccHHHHHHHHHHHhcchhhhccCCCHHHHhHhhcC
Q 007591 562 VVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARQ 597 (597)
Q Consensus 562 ~It~~d~~~Al~rvi~g~~k~~~~ls~~ek~ivayh 597 (597)
.|+++||.+|+++++.+.++++..++++|++++|||
T Consensus 258 ~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~ 293 (499)
T 2dhr_A 258 KITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYH 293 (499)
T ss_dssp SCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHH
Confidence 999999999999999999888889999999999998
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.8e-43 Score=401.40 Aligned_cols=248 Identities=43% Similarity=0.678 Sum_probs=229.9
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
..+.++|+||+|+++++++|++++.+ +++|+.|..+|..+|+|||||||||||||+||+++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
+|+|++++.++.+|+.|+.++||||||||||+|+++++.. .++...+++++|+.+||++..+.+|+||+|||+++.
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC----CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999888642 344557899999999999999899999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC----
Q 007591 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN---- 559 (597)
Q Consensus 484 Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~---- 559 (597)
||++|+||||||+.|+++.||.++|.+||+.|+++ +++..++++..||..|+||+|+||.++|++|++.|.++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~--~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS--SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC--CCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999865 567789999999999999999999999999999997752
Q ss_pred -------------CccccHHHHHHHHHHHhcc
Q 007591 560 -------------KVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 560 -------------~~~It~~d~~~Al~rvi~g 578 (597)
...|+++||..|+..+...
T Consensus 431 ~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp GGTCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred cccccccchhhhccceeeHHHHHHHHHhCCCc
Confidence 2357888999999877643
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=5.4e-39 Score=322.51 Aligned_cols=253 Identities=62% Similarity=0.955 Sum_probs=228.5
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+..+..+|+||+|+++++++|.+++.++.++..|..++...|+++||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
.+.|.++..++.+|..+....||++||||+|.+...++... .+..++..+.+++++..|+++..+.+++||++||+++.
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS-CCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc-CCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 99999999999999999999999999999999998776432 23455667889999999999888889999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 007591 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
+|++++|+|||++.+.++.|+.++|.+|++.++++ .++.+++++..++..++||+++||.++|++|+..|.+++...|
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~--~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i 240 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 240 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc--CCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999865 4677788899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcch
Q 007591 564 EKIDFIHAVERSIAGI 579 (597)
Q Consensus 564 t~~d~~~Al~rvi~g~ 579 (597)
+.+||.+|+++++.|+
T Consensus 241 ~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 241 SMVEFEKAKDKIMMGL 256 (257)
T ss_dssp CHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhcCC
Confidence 9999999999988765
No 12
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=7.7e-40 Score=327.04 Aligned_cols=262 Identities=50% Similarity=0.777 Sum_probs=208.5
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
|+++|+||+|++++++.|++++.++.+++.|..+|...++++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCCh
Q 007591 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (597)
Q Consensus 407 G~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~ 486 (597)
+.+...++.+|..+....|+||||||+|.+...+........+.+....+++++.++++.....+++||++||.++.||+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88889999999999999999999999999987664332222344556788999999998887889999999999999999
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHH
Q 007591 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (597)
Q Consensus 487 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (597)
+++|+|||+..++++.|+.++|.+|++.++.+.++....+..+..++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999988766554444458899999999999999999999999999888999999
Q ss_pred HHHHHHHHHhcchhhhccCCCH
Q 007591 567 DFIHAVERSIAGIEKKTAKLKG 588 (597)
Q Consensus 567 d~~~Al~rvi~g~~k~~~~ls~ 588 (597)
||.+|++++..+.+++...+++
T Consensus 241 d~~~a~~~~~~~~~~~~~~~~~ 262 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKSKILSK 262 (262)
T ss_dssp CHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHhccChhhhhHhhcC
Confidence 9999999999888777665553
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=333.28 Aligned_cols=253 Identities=42% Similarity=0.669 Sum_probs=211.9
Q ss_pred CCCCcCcccccCChHHHHHHHHHHH-HhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVE-FLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~-~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+.|.++|+||+|++++|++|++.+. .+.+++.|..++...|+|++|+||||||||+||+++|++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 4578999999999999999998665 489999999999999999999999999999999999999999999999999988
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
.+.+..++.++.+|..+....|||+|+||+|.+...++.. ......+.+++++.+|++......++++++||+|+.
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~ 158 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 158 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhh
Confidence 8889889999999999999999999999999987655321 112234678999999999988889999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-CCCCCCCCCHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhc--
Q 007591 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-ELPLAKDIDLGDIASMT--TGFTGADLANLVNEAALLAGRL-- 558 (597)
Q Consensus 484 Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~-~l~l~~dvdl~~LA~~t--~G~SgaDL~~Lv~eAal~A~r~-- 558 (597)
||++++||||||+.|++++|+.++|.+||+.++++. ..++..+++++.+|..+ +||||+||.++|++|++.|.++
T Consensus 159 LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998652 34567889999999975 5999999999999999999875
Q ss_pred ---------CCccccHHHHHHHHHHHhcchhh
Q 007591 559 ---------NKVVVEKIDFIHAVERSIAGIEK 581 (597)
Q Consensus 559 ---------~~~~It~~d~~~Al~rvi~g~~k 581 (597)
+...|+++||++|++++.+...+
T Consensus 239 ~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 239 ARQKSGNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp -----------CCBCHHHHHHHHTTCCCCC--
T ss_pred hhccccccccCCeecHHHHHHHHHHhcCCCCh
Confidence 23479999999999988765443
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.4e-38 Score=328.72 Aligned_cols=253 Identities=40% Similarity=0.734 Sum_probs=225.2
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
..+.|.++|+||+|++++++.|++.+.+ +.+|+.|..++..+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 3456889999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.+.+.|..+..++.+|..+....||||||||||.+...++.... .......+++++|+..|+++....+++||++||++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTC-CSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcC-CcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999987653211 11122346789999999998888899999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-- 559 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-- 559 (597)
+.||++++|+|||+..++++.|+.++|.+|++.++++. ++..+++++.++..+.||+|+||.++|++|++.|.++.
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~--~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC--CCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999764 45678899999999999999999999999999887542
Q ss_pred -----------------------CccccHHHHHHHHHHHhcc
Q 007591 560 -----------------------KVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 560 -----------------------~~~It~~d~~~Al~rvi~g 578 (597)
...|+++||.+|++++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 243 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred hhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 1368999999999876543
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=322.11 Aligned_cols=227 Identities=37% Similarity=0.635 Sum_probs=203.8
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-CCCeEEeecchh
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEF 401 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is~se~ 401 (597)
.+.|+++|+||+|++++|+.|++.+.+ +++|+.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 356789999999999999999998877 788887764 35678999999999999999999999999 899999999999
Q ss_pred HHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-CCCcEEEEeecCC
Q 007591 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-~~~~VIVIaaTNr 480 (597)
...+.|..+..++.+|..++...||||||||||.+...++.. ......+++++++.+|+++. ...+++||+|||+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 999999999999999999999999999999999998877542 34556788999999999886 3678999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 481 pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
++.||++++| ||+..+++++|+.++|.+|++.++...+..+ .+.+++.||+.|.||+|+||.++|++|++.|.++
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999997654443 4567999999999999999999999999988764
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.6e-36 Score=307.85 Aligned_cols=252 Identities=47% Similarity=0.771 Sum_probs=231.5
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
...+.++|++|+|++++++.|.+.+.. +..++.|..+|..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 456789999999999999999998877 8899999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
..+.|.....++.+|..+....|+||||||+|.+...+.+.. .....+....+.+++..++++....+++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL-TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSC-CGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcccc-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 999999999999999999999999999999999987776432 2345567788999999999888888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.+|++++|++||+..+.++.|+.++|.+|++.++... .+..++++..++..+.|+++++|.++|++|...|.+++...
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~ 245 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM--NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999998654 55677889999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 007591 563 VEKIDFIHAVERSIAG 578 (597)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (597)
|+.+|+.+|++++...
T Consensus 246 I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 246 VTMDDFRKAVEKIMEK 261 (285)
T ss_dssp BCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998743
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=6.5e-36 Score=299.56 Aligned_cols=247 Identities=59% Similarity=0.933 Sum_probs=220.9
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
..+.|.++|+|++|+++++.++++++..+..+..+...+...++|++|+||||||||+|+++++++++.+++.+++.++.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34568899999999999999999999988889999999999999999999999999999999999999999999999998
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
..+.+.....++.+|+.+....|+++||||+|.++..++... ....++..+.+++++.+|++......++++++||+|+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccc-cccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 888888888899999999888899999999999987654211 1245667788999999999988888899999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.||++++|++||++.+.++.|+.++|.+|++.+++. .++.+++++..+|..++|++|+||.++|++|+..|.+++...
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~ 243 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 243 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999988854 577788899999999999999999999999999999888889
Q ss_pred ccHHHHHHHH
Q 007591 563 VEKIDFIHAV 572 (597)
Q Consensus 563 It~~d~~~Al 572 (597)
|+.+||.+|+
T Consensus 244 I~~~dl~~a~ 253 (254)
T 1ixz_A 244 ITMKDLEEAA 253 (254)
T ss_dssp BCHHHHHHHT
T ss_pred cCHHHHHHHh
Confidence 9999999886
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=4.1e-37 Score=320.36 Aligned_cols=250 Identities=35% Similarity=0.585 Sum_probs=217.1
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 322 ~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
+..+.|+++|+||+|++++++.|++++.+ +..|+.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34567889999999999999999998877 677776655 5678899999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-CCCcEEEEeecC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATN 479 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-~~~~VIVIaaTN 479 (597)
+...+.|..+..++.+|..++...|+||||||||.|...++.. ..+...++.++++..|+++. ...+++||++||
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG----ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC----cchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 9999999999999999999999999999999999998776432 23344678899999999874 567899999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007591 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 480 rpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
+++.||++++| ||+..+++++|+.++|.+|++.++.+.+..+. +.+++.|+..+.||+|+||.++|++|+..|.++.
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999987654443 4579999999999999999999999999887752
Q ss_pred C-------------------------------------------ccccHHHHHHHHHHHhcch
Q 007591 560 K-------------------------------------------VVVEKIDFIHAVERSIAGI 579 (597)
Q Consensus 560 ~-------------------------------------------~~It~~d~~~Al~rvi~g~ 579 (597)
. ..|+++||.+|++.+.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 240 QSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp HHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 1 3499999999999876554
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=5.5e-36 Score=316.92 Aligned_cols=249 Identities=35% Similarity=0.583 Sum_probs=210.8
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
...+.++|+||+|++++++.|++.+.+ +.+|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 345789999999999999999998876 688887765 667889999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC-CCcEEEEeecCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRS 481 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~-~~~VIVIaaTNrp 481 (597)
..+.|..+..++.+|..++...||||||||||.+...++. .......+++++|+..|+++.. ..+++||++||++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE----GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC----CcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 9999999999999999999999999999999999877643 2344567788999999998764 5689999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--
Q 007591 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-- 559 (597)
Q Consensus 482 d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~-- 559 (597)
+.||++++| ||+..+++++|+.++|.+||+.++...+..+ .+.+++.||+.+.||+|+||.++|++|++.|.++.
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999998754433 35579999999999999999999999999998751
Q ss_pred -----------------------------------------CccccHHHHHHHHHHHhcchh
Q 007591 560 -----------------------------------------KVVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 560 -----------------------------------------~~~It~~d~~~Al~rvi~g~~ 580 (597)
...|+++||..|+.++.+...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 275 ATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp CSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred hhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 124999999999998876543
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=4e-38 Score=317.26 Aligned_cols=257 Identities=63% Similarity=0.959 Sum_probs=221.0
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
.+.++++|+||+|++++++.|++++.++.+++.|..++...++++||+||||||||++|+++|++++.||+.++++++.+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCC-CcEEEEeecCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSD 482 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~-~~VIVIaaTNrpd 482 (597)
.+.|.+...++.+|..+....|+||||||+|.+...+........+.+..+.+++|+..|+++... ..++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 998888888899999999999999999999999876532211112233345678888888877643 4599999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.||++++|+|||+..+.++.|+.++|.++|+.+++. +++..+++++.++..+.|++|+||.++|++|+..|..++...
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~ 240 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG--VKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKE 240 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS--SCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc--CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999865 455677789999999999999999999999999998888889
Q ss_pred ccHHHHHHHHHHHhcchhhh
Q 007591 563 VEKIDFIHAVERSIAGIEKK 582 (597)
Q Consensus 563 It~~d~~~Al~rvi~g~~k~ 582 (597)
|+.+|+.+|++++.....++
T Consensus 241 i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 241 VRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp CCHHHHHTSCTTCCCCCC--
T ss_pred cCHHHHHHHHHHHhhcchhh
Confidence 99999999998776654443
No 21
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=2.5e-34 Score=292.65 Aligned_cols=246 Identities=59% Similarity=0.940 Sum_probs=220.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
...+.++|+|++|.+++++++++++..+..+..+..++...++|++|+||||||||+|+++++++++.+++.+++.++..
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34488999999999999999999999998999999999999999999999999999999999999999999999999988
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
.+.+.....+..+|+.+....|+++||||+|.++..+.... ....++..+.+++++.+|++......++++++||+|+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~-~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV-GGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccccccc-CCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 88888888899999999888899999999999986554211 12345677889999999999887788999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 007591 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (597)
Q Consensus 484 Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~I 563 (597)
||++++|++||++.+.++.|+.++|.+||+.+++. .++.+++++..+|..++|++++||.++|++|+..|.+++...|
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I 268 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 268 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSB
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999998854 5777888999999999999999999999999999998888899
Q ss_pred cHHHHHHHH
Q 007591 564 EKIDFIHAV 572 (597)
Q Consensus 564 t~~d~~~Al 572 (597)
+.+||++|+
T Consensus 269 ~~~dl~~a~ 277 (278)
T 1iy2_A 269 TMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHT
T ss_pred CHHHHHHHh
Confidence 999999886
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=9.3e-35 Score=320.20 Aligned_cols=247 Identities=43% Similarity=0.677 Sum_probs=226.4
Q ss_pred CCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
+.++|++|+|++++++.|.+++.. +++|+.|..+|..+++++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 568999999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC
Q 007591 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld 485 (597)
.|..+..++.+|..|....||||||||||.+...++.. ..+...+++++|+..|++.....+++||+|||+++.||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~----~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC----CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc----cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 99999999999999999999999999999999876532 34555788899999999988888999999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc----
Q 007591 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV---- 561 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~---- 561 (597)
++++|+|||+..++++.|+.++|.+||+.++.. +++..++++..++..+.||+++||.++|++|+..|.++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~--~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~ 432 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc--CCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999865 45667888999999999999999999999999999887532
Q ss_pred -------------cccHHHHHHHHHHHhcch
Q 007591 562 -------------VVEKIDFIHAVERSIAGI 579 (597)
Q Consensus 562 -------------~It~~d~~~Al~rvi~g~ 579 (597)
.|+++||..|++++....
T Consensus 433 ~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp TCSSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred cccccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 489999999998876543
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.3e-34 Score=315.21 Aligned_cols=228 Identities=37% Similarity=0.628 Sum_probs=193.0
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-CCCeEEeecch
Q 007591 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASE 400 (597)
Q Consensus 323 ~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is~se 400 (597)
....+.++|+||+|++++++.|.+.+.+ +++|+.|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998865 677776653 35678999999999999999999999999 89999999999
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC-CCcEEEEeecC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATN 479 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~-~~~VIVIaaTN 479 (597)
+...+.|..+..++.+|..++...||||||||||.+...++.. ......+++++|+..|+++.. ..+++||+|||
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 9999999999999999999999999999999999998776532 334456888999999998763 57899999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 007591 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (597)
Q Consensus 480 rpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~ 558 (597)
+++.||++++| ||+..+.+++|+.++|.+|++.++...+..+ .+.+++.||..+.||+|+||.++|++|++.|.++
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999997654433 4567999999999999999999999999988764
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=5e-37 Score=356.52 Aligned_cols=315 Identities=36% Similarity=0.669 Sum_probs=247.8
Q ss_pred ceEEEecCCCCCchhHHH--HHhCCceeccCCC---------------------------CCcChHHHHHHHHHHHHHHH
Q 007591 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+|++|+.+++.+.. ++++.+.+..|+. .+.||.+.++..++..+.+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~ 421 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 467889999888876653 5555555544432 24678889999999888877
Q ss_pred Hhhhccccc-ccc-------------cccccc--ccccCCCCCCccccCCCCcCcccccCChHHHHHHHHHHHH-hcChh
Q 007591 293 GLLHRFPVS-FSQ-------------TAGQVG--HRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPD 355 (597)
Q Consensus 293 ~~~~~~~~~-~~~-------------~~~~~~--~~~~~~~~~~~~~~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~ 355 (597)
++.+..... ... ...... ......+.......+.+.++|+|++|++++|+.|.+++.+ +.++.
T Consensus 422 a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~ 501 (806)
T 1ypw_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501 (806)
T ss_dssp HHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCT
T ss_pred HHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchH
Confidence 655332110 000 000000 0001111122233456789999999999999999999887 77888
Q ss_pred HHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcch
Q 007591 356 KYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (597)
Q Consensus 356 ~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDa 435 (597)
.|..++..++.++||+||||||||+||+++|++++.+|+.++++++.+.|+|..+..++.+|+.++...||||||||||.
T Consensus 502 ~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp TTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHH
T ss_pred HHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 007591 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (597)
Q Consensus 436 L~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~ 515 (597)
+...++... ........+++++||.+|+++....+++||+|||+++.||++++|||||+..|++++|+.++|.+||+.+
T Consensus 582 l~~~r~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 660 (806)
T 1ypw_A 582 IAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp HCCTTTTCC-SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTT
T ss_pred hhhhccCCC-CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHH
Confidence 988775421 1223466889999999999998888999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007591 516 VSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 516 l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
+++ .++..+++++.|++.+.||||+||.++|++|+..|.++.
T Consensus 661 l~~--~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 661 LRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp TSC--C----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred hcc--CCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 965 456778899999999999999999999999999998874
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-33 Score=292.69 Aligned_cols=246 Identities=35% Similarity=0.581 Sum_probs=211.9
Q ss_pred CCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~ 404 (597)
.++++|+||+|++++++.|.+.+.. +..++.|...+ .+++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 4678999999999999999999886 67777666554 678899999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC--CCcEEEEeecCCCC
Q 007591 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNRSD 482 (597)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~--~~~VIVIaaTNrpd 482 (597)
+.|..+..++.+|..+....|+||||||||.|...++. +.+....+.+++++..|++... ..+++||++||+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC----CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999876643 2344567888999999998653 46899999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc----
Q 007591 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL---- 558 (597)
Q Consensus 483 ~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~---- 558 (597)
.|+++++| ||+..++++.|+.++|.+|++.++...+..+.+ .+++.|+..+.||+++||.++|++|+..+.++
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~-~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSE-EEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCH-HHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999999999999876655554 36899999999999999999999999988874
Q ss_pred --------CCccccHHHHHHHHHHHhcch
Q 007591 559 --------NKVVVEKIDFIHAVERSIAGI 579 (597)
Q Consensus 559 --------~~~~It~~d~~~Al~rvi~g~ 579 (597)
....|+.+||..|+.++....
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 310 DIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp ---------CCCBCHHHHHHHHHHHGGGC
T ss_pred hhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 235799999999999887644
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-33 Score=286.40 Aligned_cols=247 Identities=38% Similarity=0.609 Sum_probs=210.1
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
...++++|+|++|++++++.|.+.+.. +.+|+.|..++ .+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345789999999999999999998876 66777766554 5678999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCC---CcEEEEeecC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN---SAVIVLGATN 479 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~---~~VIVIaaTN 479 (597)
..+.|.+...++.+|..+....|+||||||+|.+...++.. ..+......++++..+++.... .+++||++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS----EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC----cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 99999999999999999999999999999999998766432 1222356778899999887653 5799999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 007591 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (597)
Q Consensus 480 rpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~ 559 (597)
+++.+++++++ ||+..++++.|+.++|..|++.++...+..+.++ +++.++..+.|++++||.++|++|+..|.++.
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTE-ALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHH-HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999998766555443 68899999999999999999999999998764
Q ss_pred ------------CccccHHHHHHHHHHHhcc
Q 007591 560 ------------KVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 560 ------------~~~It~~d~~~Al~rvi~g 578 (597)
...|+.+||..|+.++...
T Consensus 245 ~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 245 NVEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp C--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred hhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 2579999999999776543
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-32 Score=288.86 Aligned_cols=247 Identities=39% Similarity=0.610 Sum_probs=204.0
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
...+.++|+||+|++++++.|.+++.. +.+++.|..++ .+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 345678999999999999999998876 56666666555 5578999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC--CCcEEEEeecCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNR 480 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~--~~~VIVIaaTNr 480 (597)
..+.|..+..++.+|..+....|+||||||||.|...+.. ...+...+.+++|+..|++... ...++||++||+
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE----GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC----ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 9999999999999999999999999999999999876543 2334457788899999987654 467999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc--
Q 007591 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL-- 558 (597)
Q Consensus 481 pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~-- 558 (597)
++.|+++++| ||+..++++.|+.++|.+|++.++...+..+.++ ++..|+..+.|+++++|..+++.|+..+.++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~-~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHH-HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999999999999998877766655 6899999999999999999999999998876
Q ss_pred ----------CCccccHHHHHHHHHHHhcc
Q 007591 559 ----------NKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 559 ----------~~~~It~~d~~~Al~rvi~g 578 (597)
....|+.+||..++.+....
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 34579999999999876543
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=2.1e-28 Score=284.32 Aligned_cols=246 Identities=43% Similarity=0.681 Sum_probs=220.8
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
..+.++|+||+|++++++.|.+++.. +.+|+.|..++..++.++||+||||||||+||+++|++++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCC
Q 007591 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~ 483 (597)
.+.+..+..++.+|..+....|+|+||||||.+...++. ...+...+++++++..|++......+++|++||+++.
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC----CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc----ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 999999999999999999999999999999999877653 2334557788999999999988889999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC---
Q 007591 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK--- 560 (597)
Q Consensus 484 Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~--- 560 (597)
+|+++.+++||+..+.++.|+.++|.+|++.++.+ +.+..++++..++..+.|++++++..++++|+..+.++..
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i 430 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT--SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhc--CCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999998865 4566778899999999999999999999999988876532
Q ss_pred --------------ccccHHHHHHHHHHHh
Q 007591 561 --------------VVVEKIDFIHAVERSI 576 (597)
Q Consensus 561 --------------~~It~~d~~~Al~rvi 576 (597)
..++.+|+..++....
T Consensus 431 ~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 431 DLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp SCHHHHCCHHHHTTCCCCTTHHHHHHHHSC
T ss_pred chhhhccchhhhhhhhhhhhhhhccccccC
Confidence 2356677777776654
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=1.1e-28 Score=254.25 Aligned_cols=176 Identities=20% Similarity=0.257 Sum_probs=138.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHH----HhcCCeEEEEcCcchh
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDAV 436 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A----~~~~P~ILfIDEIDaL 436 (597)
+.++|+++||+||||||||++|+++|++++.+|+.++++++.+.++|..+..++.+|..| +...||||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 568899999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hhhcCCccccccchHHHHHHHHHHHhhcCCC-----------CCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCH
Q 007591 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDK 505 (597)
Q Consensus 437 ~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----------~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~ 505 (597)
...+++.. ........+.+.|+..||+.. ...+++||+|||+++.||++++|||||+..+. .|+.
T Consensus 112 ~~~~~~~~--~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 112 AGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred cCCCCCCc--cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 87554211 111123456677888877432 45679999999999999999999999998887 5799
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHH
Q 007591 506 IGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLAN 546 (597)
Q Consensus 506 ~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~ 546 (597)
++|.+|++.++.. .+++++.++..+.||++++|..
T Consensus 188 ~~r~~Il~~~~~~------~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 188 EDRIGVCTGIFRT------DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHHGG------GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHHhccC------CCCCHHHHHHHhCCCCcccHHH
Confidence 9999999988864 3567899999999999988853
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=6.4e-26 Score=247.24 Aligned_cols=171 Identities=21% Similarity=0.251 Sum_probs=131.1
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecchhHH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se~~~ 403 (597)
.+...|++++|++++++.+.++++.++. +..+++++||+||||||||++|+++|++++ ++|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4567799999999999999999876543 456789999999999999999999999999 9999999999999
Q ss_pred HhhccchHHHHHHHHHH---HhcCCeEEEEcCcchhhhhcCCccccccchHHH---------------HHHHHHHHhhc-
Q 007591 404 LYVGMGASRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE---------------QTLNQLLTEMD- 464 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A---~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e---------------~~Ln~LL~emd- 464 (597)
.++|..+. ++.+|..| +...||||||||+|.++..++.....+...... +..++++..|+
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 99999999 788899999999999998775431111100001 11233555554
Q ss_pred -CCCCCCcEEEEeecCCCCCCChhhhCCCCcce--EEEecCCC
Q 007591 465 -GFDSNSAVIVLGATNRSDVLDPALRRPGRFDR--VVMVETPD 504 (597)
Q Consensus 465 -~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~--~I~v~~Pd 504 (597)
+......++|++|||+++.+|+++.||||||+ .+.++.|+
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~ 225 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPK 225 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCC
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCc
Confidence 33444556667999999999999999999987 45556663
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.91 E-value=9.4e-24 Score=221.22 Aligned_cols=223 Identities=20% Similarity=0.285 Sum_probs=172.9
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecchhHH
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se~~~ 403 (597)
.|..+|++++|++++++.+..+...+.. +..+++++||+||||||||++|+++|++++ .||+.+++..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 3556699999999999998888876654 344568999999999999999999999986 4898888766332
Q ss_pred Hhh-------------------------------------------------ccchHHHHHHHHHHHh---------cCC
Q 007591 404 LYV-------------------------------------------------GMGASRVRDLFARAKK---------EAP 425 (597)
Q Consensus 404 ~~v-------------------------------------------------G~~~~~vr~lF~~A~~---------~~P 425 (597)
.+. |.....++..+..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 221 1224456666655543 127
Q ss_pred eEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec-----------CCCCCCChhhhCCCCc
Q 007591 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT-----------NRSDVLDPALRRPGRF 494 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT-----------Nrpd~Ld~aLlRpgRF 494 (597)
+||||||+|.+.. ..++.|+..++... ..++++++. |.+..++++|++ ||
T Consensus 191 ~vl~IDEi~~l~~---------------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 191 GVLFIDEVHMLDI---------------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp CEEEEESGGGSBH---------------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred ceEEEhhccccCh---------------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 8999999998852 34466777776433 245555443 347889999999 88
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 007591 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 495 d~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (597)
.. +.+++|+.+++.+|++.++...+..+.+++ ++.|++.+.+.+++++.++++.|+..|..++...|+.+|+.+|++.
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~-l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDA-YTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHH-HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 75 899999999999999999988777776664 8889999984599999999999999999999999999999999986
Q ss_pred Hh
Q 007591 575 SI 576 (597)
Q Consensus 575 vi 576 (597)
.+
T Consensus 330 ~~ 331 (368)
T 3uk6_A 330 FL 331 (368)
T ss_dssp SB
T ss_pred hc
Confidence 44
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=5.6e-24 Score=217.73 Aligned_cols=223 Identities=18% Similarity=0.282 Sum_probs=174.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCC---CCCeeEEecCCCChHHHHHHHHHHhc-------CCCeEEeecchhH
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGAR---PPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEFV 402 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~---~p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~is~se~~ 402 (597)
+|+|++++++.|.+++..+..+..+...|.. ++.++||+||||||||++|+++|+++ ..+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 7999999999999999886667777666644 44579999999999999999999987 3499999999999
Q ss_pred HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC
Q 007591 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd 482 (597)
..+.|.....+..+|..+ .++||||||+|.+...++. .+.....++.|+..|+.. ..++++|++||.++
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~------~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENN--RDDLVVILAGYADR 180 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc------ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHH
Confidence 999998888899999887 3579999999999755432 112246778888888753 34678888887653
Q ss_pred -----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh-------CCCCCHHHHHHHHHH
Q 007591 483 -----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (597)
Q Consensus 483 -----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~-------t~G~SgaDL~~Lv~e 550 (597)
.++|+|++ ||+..+.|++|+.+++.+|++.++.+.++.+.++. ++.++.. ....+++++.++++.
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA-ETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH-HHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 35799998 99999999999999999999999988776666553 6666665 333468999999999
Q ss_pred HHHHHHhc----CCccccHHHHH
Q 007591 551 AALLAGRL----NKVVVEKIDFI 569 (597)
Q Consensus 551 Aal~A~r~----~~~~It~~d~~ 569 (597)
|+..+..+ ....++.+++.
T Consensus 258 a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 258 ARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHh
Confidence 98766544 34556666654
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.90 E-value=2.9e-22 Score=208.00 Aligned_cols=216 Identities=19% Similarity=0.218 Sum_probs=171.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
..+.+|++++|++++++.|...+..... ...++.++||+||||||||++|+++|++++.+|+.+++..+.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 3456899999999999999998876432 234567899999999999999999999999999999987652
Q ss_pred hccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC----------------C
Q 007591 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS----------------N 469 (597)
Q Consensus 406 vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~----------------~ 469 (597)
....+...+.. ...+++|||||||.+... ..+.|+..|+...- .
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~---------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRLSPA---------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGCCHH---------------HHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhcCHH---------------HHHHHHHHHHhccchhhcccCccccceecCC
Confidence 23334444433 345789999999988532 33455555554320 1
Q ss_pred CcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 007591 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 470 ~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
.++++|++||+...++++|++ ||+..+.+++|+.+++.++++.++...+..+.++ .++.|+..+.| +++++.+++.
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~ 228 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEK-AALEIAKRSRS-TPRIALRLLK 228 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHH-HHHHHHHTTTT-CHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHCc-CHHHHHHHHH
Confidence 248999999999999999999 9999999999999999999999998776655554 37788886665 8899999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHH
Q 007591 550 EAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~rv 575 (597)
.+...|...+...|+.+++..++...
T Consensus 229 ~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 229 RVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99988888888899999999998764
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=1.8e-21 Score=200.07 Aligned_cols=231 Identities=21% Similarity=0.267 Sum_probs=173.1
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
.+.+|++++|.+++++.|.+.+...... ...+.++||+||||||||++|++++++++.+|+.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4558999999999999999888754321 235678999999999999999999999999999999876522
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC----------------CCC
Q 007591 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNS 470 (597)
Q Consensus 407 G~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~----------------~~~ 470 (597)
...+...|..+ ...+++|||||+|.+.... .+.|+..++... ...
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~---------------~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQA---------------EEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHHH---------------HHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccch---------------HHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 22223333221 2457899999999875322 233333333221 113
Q ss_pred cEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007591 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
++++|++||.+..++++|.+ ||+..+.+++|+.+++.++++.++...+..+.++ .++.|+..+.| +++++.++++.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE-AALEIGRRSRG-TMRVAKRLFRR 213 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHSCS-CHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHccC-CHHHHHHHHHH
Confidence 57899999999999999988 9988999999999999999999998777766655 37888999876 78999999999
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHhcchhhhccCCCHHHHhHh
Q 007591 551 AALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVV 594 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~rvi~g~~k~~~~ls~~ek~iv 594 (597)
+...|...+...|+.+++..++...... ...+++.|+.++
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~~~~~----~~~l~~~e~~~i 253 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAALGLD----ELGLEKRDREIL 253 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHHHTCC----TTCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhccc----ccCCCHHHHHHH
Confidence 9888777777889999999888764221 124556665543
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=2.3e-21 Score=197.29 Aligned_cols=238 Identities=24% Similarity=0.321 Sum_probs=166.2
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhHHhh-hCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-Hhhcc
Q 007591 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIR-LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~-l~~p~~~~~-lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-~~vG~ 408 (597)
++|+|++++++.|...+.. +..+..... .+...+.++||+||||||||++|+++|+.++.+++.++++++.+ .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3599999999999987754 111110000 01245778999999999999999999999999999999998865 44443
Q ss_pred c-hHHHHHHHHHH-----HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------CCCcEEE
Q 007591 409 G-ASRVRDLFARA-----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIV 474 (597)
Q Consensus 409 ~-~~~vr~lF~~A-----~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------~~~~VIV 474 (597)
. ...+++++..+ ....++||||||+|.+....... +.....+.+.+.|+..|++.. ...++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~---~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS---GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC---SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc---ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 2 34566666533 11236799999999998665321 223333445678888887541 2346788
Q ss_pred Eee----cCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH-----------HHhcCCC--CCCCCCCHHHHHHhCC
Q 007591 475 LGA----TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV-----------HVSKKEL--PLAKDIDLGDIASMTT 537 (597)
Q Consensus 475 Iaa----TNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~-----------~l~~~~l--~l~~dvdl~~LA~~t~ 537 (597)
|++ ++.+..+++++++ ||+..+.+++|+.+++.+|++. .+...+. .++++ .++.|++.+.
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~ 248 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD-AVKKIAEAAF 248 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHH-HHHHHHHHHH
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHH-HHHHHHHHhh
Confidence 888 5677899999998 9998899999999999999983 1222222 34443 3677777662
Q ss_pred -------CCCHHHHHHHHHHHHHHHHh-----cCC-ccccHHHHHHHHHHH
Q 007591 538 -------GFTGADLANLVNEAALLAGR-----LNK-VVVEKIDFIHAVERS 575 (597)
Q Consensus 538 -------G~SgaDL~~Lv~eAal~A~r-----~~~-~~It~~d~~~Al~rv 575 (597)
+.+.+++.++++.+...+.. .+. ..|+.+|+.+++...
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 45889999999987644322 122 259999999988654
No 36
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.85 E-value=5.4e-20 Score=191.95 Aligned_cols=244 Identities=20% Similarity=0.208 Sum_probs=175.7
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeec
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSA 398 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~ 398 (597)
...+++++|.++..+.|...+.... ....+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3455889999998888877664321 12456789999999999999999999988 889999998
Q ss_pred chhHHHh----------------hccchHH-HHHHHHHHHh-cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHH
Q 007591 399 SEFVELY----------------VGMGASR-VRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (597)
Q Consensus 399 se~~~~~----------------vG~~~~~-vr~lF~~A~~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL 460 (597)
....+.+ .|..... ...++..... ..|+||||||+|.+...+ .....+..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~----------~~~~~l~~l~ 156 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP----------GGQDLLYRIT 156 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST----------THHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC----------CCChHHHhHh
Confidence 7532110 1111223 3444444433 348899999999997432 0135677777
Q ss_pred HhhcCCCCCCcEEEEeecCCC---CCCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhc--CCCCCCCCCCHHHHHH
Q 007591 461 TEMDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDIAS 534 (597)
Q Consensus 461 ~emd~~~~~~~VIVIaaTNrp---d~Ld~aLlRpgRFd~-~I~v~~Pd~~eR~~ILk~~l~~--~~l~l~~dvdl~~LA~ 534 (597)
..++......++.+|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++.++.. .+..+.++ .++.+++
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~ 233 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAA 233 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 777655424578888999887 788999988 8864 8999999999999999998864 33445554 3777888
Q ss_pred hCC---CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhccCCCHHHHhH
Q 007591 535 MTT---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAV 593 (597)
Q Consensus 535 ~t~---G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~-~k~~~~ls~~ek~i 593 (597)
.+. | +++.+.++++.|+..|...+...|+.+|+.+|+....... .+.-..+++.++.+
T Consensus 234 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~ 295 (387)
T 2v1u_A 234 LAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLV 295 (387)
T ss_dssp HHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHH
Confidence 776 5 7899999999999999888888999999999998774332 22224567766654
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.83 E-value=3e-20 Score=187.75 Aligned_cols=227 Identities=19% Similarity=0.238 Sum_probs=152.8
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH-HHhhcc
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV-ELYVGM 408 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~-~~~vG~ 408 (597)
....++|.+++.+.+......+. ..+...+..++.++||+||||||||++|+++|.+++.+|+.+++++.. ....+.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 34568888887666665322211 112222456778999999999999999999999999999999887521 111122
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-CCCcEEEEeecCCCCCCCh-
Q 007591 409 GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDP- 486 (597)
Q Consensus 409 ~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-~~~~VIVIaaTNrpd~Ld~- 486 (597)
....++.+|..+....++||||||||.+...+... .......++.|...+++.. ....++||++||.++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~ 183 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEM 183 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchh
Confidence 23567889999888889999999999997554321 1122456666777777654 3457889999999988887
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC----CHHHHHHHHHHHHHHHHhcCCcc
Q 007591 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF----TGADLANLVNEAALLAGRLNKVV 562 (597)
Q Consensus 487 aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~----SgaDL~~Lv~eAal~A~r~~~~~ 562 (597)
.+.+ ||+..+.++++ .+|.+|........ .+. +.++..+++.+.|+ +.+++.++++.|...+ ..
T Consensus 184 ~l~~--rf~~~i~~p~l--~~r~~i~~i~~~~~--~~~-~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~ 251 (272)
T 1d2n_A 184 EMLN--AFSTTIHVPNI--ATGEQLLEALELLG--NFK-DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PE 251 (272)
T ss_dssp TCTT--TSSEEEECCCE--EEHHHHHHHHHHHT--CSC-HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GG
T ss_pred hhhc--ccceEEcCCCc--cHHHHHHHHHHhcC--CCC-HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hH
Confidence 4554 99888877555 44455555444332 233 33588899999887 5777777777665432 33
Q ss_pred ccHHHHHHHHHHH
Q 007591 563 VEKIDFIHAVERS 575 (597)
Q Consensus 563 It~~d~~~Al~rv 575 (597)
...+++..+++..
T Consensus 252 ~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 252 YRVRKFLALLREE 264 (272)
T ss_dssp GHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4556666666543
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.83 E-value=3.6e-20 Score=201.34 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=160.3
Q ss_pred CCCcCccccc-CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecc
Q 007591 326 GDTITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (597)
Q Consensus 326 ~~~vtf~dV~-G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~s 399 (597)
.+..+|++++ |..... .+..+......+ .. +.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3567899987 544322 333333333332 12 6689999999999999999999988 8999999999
Q ss_pred hhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecC
Q 007591 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTN 479 (597)
++...+.+.........|.......++||||||+|.+.... .....|+..++........+||++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-------------~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-------------GVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-------------HHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-------------HHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 88765544332222233444444368899999999986421 11122333332222234566666666
Q ss_pred CCCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 480 RSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 480 rpd~---Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
.+.. ++++|++ ||. ..+.+++|+.++|.+|++..+...++.+++++ ++.|+..+.| +.+++.++++.+...
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~ 312 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 5654 8899998 885 78999999999999999999987777777775 8899999976 999999999999988
Q ss_pred HHhcCCccccHHHHHHHHHHHh
Q 007591 555 AGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi 576 (597)
|...+. .|+.+++.+++....
T Consensus 313 a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 313 KETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHhCC-CCCHHHHHHHHHHHh
Confidence 876654 699999999987665
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.83 E-value=2.9e-19 Score=170.73 Aligned_cols=203 Identities=24% Similarity=0.244 Sum_probs=152.0
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecch
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se 400 (597)
.++.+|++++|.+++++.|.+.+..- .+.++||+||||||||++|++++.++ ..+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 35677999999999998888877521 22349999999999999999999875 46788888765
Q ss_pred hHHHhhccchHHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 401 FVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
... ...+...+.... ...++||+|||+|.+... ..+.|+..++.. ..++.+
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~l~~~l~~~--~~~~~~ 135 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------------AQAALRRTMEMY--SKSCRF 135 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH---------------HHHHHHHHHHHT--TTTEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH---------------HHHHHHHHHHhc--CCCCeE
Confidence 422 122333333322 246889999999987532 224445555432 345778
Q ss_pred EeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 475 IaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...+..+.++ .++.++..+.| +++.+.+++..++..
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~l~~~l~~~~~~ 210 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAAI 210 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 8889999999999998 887 899999999999999999987766666554 47788888866 788888888877765
Q ss_pred HHhcCCccccHHHHHHHHH
Q 007591 555 AGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~ 573 (597)
+ ..|+.+|+++++.
T Consensus 211 ~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 211 G-----EVVDADTIYQITA 224 (226)
T ss_dssp C-----SCBCHHHHHHHHH
T ss_pred C-----ceecHHHHHHHhc
Confidence 4 5899999999875
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.82 E-value=6.5e-21 Score=212.43 Aligned_cols=228 Identities=22% Similarity=0.298 Sum_probs=154.6
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH----
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---- 403 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~---- 403 (597)
..-.+|++|++++++.+.+.+..... .... ++..+||+||||||||+||+++|+.++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~-----~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKL-----TKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHH-----SSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHh-----cccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 44567899999999999876543110 0011 4668999999999999999999999999999999876544
Q ss_pred -----HhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC----------
Q 007591 404 -----LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---------- 468 (597)
Q Consensus 404 -----~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~---------- 468 (597)
.++|.....+...|..+....| ||||||||.+...++. ...+.|+..|+....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-----------~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-----------DPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-----------CHHHHHHHHHhhhhcceeecccCCe
Confidence 5667666777888888876666 9999999999765431 234567777764321
Q ss_pred ---CCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCC-----CCCCCCCHHHHHH-
Q 007591 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIAS- 534 (597)
Q Consensus 469 ---~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~-----~~l-----~l~~dvdl~~LA~- 534 (597)
..++++|+|||+++.++++|++ ||+ .|.++.|+.+++.+|++.++.. .++ .+.++ .+..++.
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~-~l~~l~~~ 294 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQ-AILDIIRY 294 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHH-HHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHH-HHHHHHHh
Confidence 1568999999999999999999 995 7999999999999999988732 222 22233 2555554
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH----hc--CCccccHHHHHHHHHHHhc
Q 007591 535 MTTGFTGADLANLVNEAALLAG----RL--NKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 535 ~t~G~SgaDL~~Lv~eAal~A~----r~--~~~~It~~d~~~Al~rvi~ 577 (597)
.+.....++|++.+..++..|. +. +...|+.+++.+++.....
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCCS
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCccc
Confidence 4443455776666555544443 33 4457999999998865443
No 41
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.82 E-value=6.7e-19 Score=184.62 Aligned_cols=234 Identities=21% Similarity=0.247 Sum_probs=167.7
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----------CCCeEEee
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----------EVPFISCS 397 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----------g~pfi~is 397 (597)
...++++|.++..+.|.+.+..... ...+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 3448899999999999888765322 2456789999999999999999999987 89999999
Q ss_pred cchhH-H----------Hh-------hccchH-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHH-HH
Q 007591 398 ASEFV-E----------LY-------VGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT-LN 457 (597)
Q Consensus 398 ~se~~-~----------~~-------vG~~~~-~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~-Ln 457 (597)
|.+.. . .. .+.... .+..++..+... ++||||||+|.+...... .. +.
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~-----------~~~l~ 156 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGG-----------DIVLY 156 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTS-----------HHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCC-----------ceeHH
Confidence 87543 1 11 111122 234444444333 449999999999754311 22 44
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCC---CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc--CCCCCCCCCCHHHH
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGDI 532 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrp---d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~--~~l~l~~dvdl~~L 532 (597)
.|+... .++.+|++||.+ +.+++++.+ ||...+.+++|+.++..+|++.++.. .+..+.++ .++.+
T Consensus 157 ~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i 227 (384)
T 2qby_B 157 QLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE-ILSYI 227 (384)
T ss_dssp HHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHH
T ss_pred HHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH-HHHHH
Confidence 444432 678888999887 678999988 88779999999999999999998864 22344444 36778
Q ss_pred HHhCC---CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhccCCCHHHHhHh
Q 007591 533 ASMTT---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAVV 594 (597)
Q Consensus 533 A~~t~---G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~-~k~~~~ls~~ek~iv 594 (597)
++.+. | +.+.+.++++.|...|. +...|+.+|+.+|+++..... .+.-..+++.++.++
T Consensus 228 ~~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l 290 (384)
T 2qby_B 228 AAISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLAL 290 (384)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHH
Confidence 88776 4 67888899999988876 667899999999998875322 222245677776653
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.82 E-value=1.3e-19 Score=197.59 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=156.4
Q ss_pred CCCcCcccccCChHHH---HHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 326 GDTITFADVAGVDEAK---EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k---~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
..+.+|++++|+++++ ..|...+..- ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-- 85 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT-- 85 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT--
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc--
Confidence 3457899999999998 6666666531 1257999999999999999999999999999998743
Q ss_pred HHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 403 ELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
.+...++.++..+.. ..++||||||||.+....+ +.|+..|+. ..+++|++|
T Consensus 86 -----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q---------------~~LL~~le~----~~v~lI~at 141 (447)
T 3pvs_A 86 -----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ---------------DAFLPHIED----GTITFIGAT 141 (447)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------CCHHHHHT----TSCEEEEEE
T ss_pred -----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH---------------HHHHHHHhc----CceEEEecC
Confidence 344566777776653 4678999999999865432 345666663 346666666
Q ss_pred --CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-------CCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 007591 479 --NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-------KELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 479 --Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~-------~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
|....++++|++ |+. ++.+++|+.+++..+++.++.+ .++.+.++ .++.|+..+.| +.+++.++++
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~-al~~L~~~~~G-d~R~lln~Le 216 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDE-TRRAIAELVNG-DARRALNTLE 216 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHH-HHHHHHHHHCS-CHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHH-HHHHHHHHCCC-CHHHHHHHHH
Confidence 444689999999 776 7889999999999999999986 22334433 37788888766 8999999999
Q ss_pred HHHHHHHhc--CCccccHHHHHHHHHHHh
Q 007591 550 EAALLAGRL--NKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 550 eAal~A~r~--~~~~It~~d~~~Al~rvi 576 (597)
.|+..+... +...||.+++.+++.+..
T Consensus 217 ~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 217 MMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHhcccccCCCCccCHHHHHHHHhhhh
Confidence 998887533 556899999999886543
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.81 E-value=9.3e-20 Score=192.14 Aligned_cols=236 Identities=24% Similarity=0.284 Sum_probs=160.0
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHh---hhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH-hhcc
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYI---RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGM 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~---~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~-~vG~ 408 (597)
.|+|++++++.|...+.......... .....++.++||+||||||||++|+++|.+++.||+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998885321111000 0112367899999999999999999999999999999999988753 6776
Q ss_pred c-hHHHHHHHHHH----HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC----------------
Q 007591 409 G-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------------- 467 (597)
Q Consensus 409 ~-~~~vr~lF~~A----~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------------- 467 (597)
. ...++.+|..+ ....++||||||||.+...+.... .+.+...+.+.+.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~-~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS-ITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC----CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc-cccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 5 56677777765 344578999999999987765321 2233334558899999998431
Q ss_pred ---CCCcEEEEeecCCC----------CC-----------------------------------CChhhhCCCCcceEEE
Q 007591 468 ---SNSAVIVLGATNRS----------DV-----------------------------------LDPALRRPGRFDRVVM 499 (597)
Q Consensus 468 ---~~~~VIVIaaTNrp----------d~-----------------------------------Ld~aLlRpgRFd~~I~ 499 (597)
...++++|+++|.. .. +.|+|+. ||+..+.
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~ 252 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVAT 252 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEE
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeee
Confidence 11233444444421 11 6788887 9999999
Q ss_pred ecCCCHHHHHHHHHH----HH-------hcCCC--CCCCCCCHHHHHH--hCCCCCHHHHHHHHHHHHHHHHhcCC----
Q 007591 500 VETPDKIGREAILKV----HV-------SKKEL--PLAKDIDLGDIAS--MTTGFTGADLANLVNEAALLAGRLNK---- 560 (597)
Q Consensus 500 v~~Pd~~eR~~ILk~----~l-------~~~~l--~l~~dvdl~~LA~--~t~G~SgaDL~~Lv~eAal~A~r~~~---- 560 (597)
+.+|+.+++.+|+.. ++ ...+. .+.++ .++.|+. ....+..++|.++++++...+..+..
T Consensus 253 ~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~-a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~ 331 (363)
T 3hws_A 253 LNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDE-ALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED 331 (363)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHH-HHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccC
Confidence 999999999999886 22 11122 23333 2666775 33555679999999999887766431
Q ss_pred ---ccccHHHHHHHH
Q 007591 561 ---VVVEKIDFIHAV 572 (597)
Q Consensus 561 ---~~It~~d~~~Al 572 (597)
..|+.+++++.+
T Consensus 332 ~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 332 VEKVVIDESVIDGQS 346 (363)
T ss_dssp SEEEECHHHHTTCCS
T ss_pred CceeEEcHHHHhCcC
Confidence 246666655443
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.81 E-value=2.8e-19 Score=185.15 Aligned_cols=220 Identities=19% Similarity=0.233 Sum_probs=153.7
Q ss_pred CCcCccccc-CC--hHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecch
Q 007591 327 DTITFADVA-GV--DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (597)
Q Consensus 327 ~~vtf~dV~-G~--de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se 400 (597)
+..+|++++ |. ..+...+..+++ .+ ...+.+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 567899987 43 333344444332 22 2346789999999999999999999988 89999999998
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
+...+.+.........|..... .++||||||+|.+...+. ..+.+..++..+ ......+|+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~----------~~~~l~~~l~~~---~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKER----------TQIEFFHIFNTL---YLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCHH----------HHHHHHHHHHHH---HHTTCEEEEEESSC
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCChH----------HHHHHHHHHHHH---HHCCCeEEEEecCC
Confidence 8766554433222233333332 377999999999864211 111222222222 12344677777777
Q ss_pred CC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH-
Q 007591 481 SD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL- 554 (597)
Q Consensus 481 pd---~Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~- 554 (597)
+. .++++|.+ ||. ..+.+++ +.+++.+|++.++...++.+++++ ++.|+..+ | +.+++.++++.++..
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~-l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEV-IDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHH-HHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 75 68999998 885 7899999 999999999999988788777765 88899999 5 889999999987765
Q ss_pred --HHh-cCCccc-cHHHHHHHHHHHh
Q 007591 555 --AGR-LNKVVV-EKIDFIHAVERSI 576 (597)
Q Consensus 555 --A~r-~~~~~I-t~~d~~~Al~rvi 576 (597)
+.. .+...| +.+++.+++....
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCHHHHHHHHHHHh
Confidence 111 223468 8889888887654
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.80 E-value=2.4e-19 Score=174.73 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=144.1
Q ss_pred CCcCcccccCCh---HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecch
Q 007591 327 DTITFADVAGVD---EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (597)
Q Consensus 327 ~~vtf~dV~G~d---e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se 400 (597)
+..+|++++|.. ++.+.|..++. . ..+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 347899999733 44444444332 1 245789999999999999999999876 47889999888
Q ss_pred hHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcE-EEEeecC
Q 007591 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV-IVLGATN 479 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~V-IVIaaTN 479 (597)
+...+... +.. ...+++|||||+|.+..... ....+..++... .....+ +|++++.
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~~----------~~~~l~~~l~~~---~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAGHPL----------WEEAIFDLYNRV---AEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTTCHH----------HHHHHHHHHHHH---HHHCSCEEEEEESS
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccCCHH----------HHHHHHHHHHHH---HHcCCCeEEEEcCC
Confidence 75543211 111 13467999999998853210 012222222222 112333 5555554
Q ss_pred CCC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 007591 480 RSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (597)
Q Consensus 480 rpd---~Ld~aLlRpgRFd--~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~ 554 (597)
.++ .+++++.+ ||. ..+.+++|+.+++.++++.++...++.+.+++ ++.++..+.| +.+++.++++.+...
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g-~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDV-GRFLLNRMAR-DLRTLFDVLDRLDKA 223 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHH-HHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 454 45688888 775 89999999999999999999987777776653 7888998876 899999999999988
Q ss_pred HHhcCCccccHHHHHHHHH
Q 007591 555 AGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 555 A~r~~~~~It~~d~~~Al~ 573 (597)
|...+ ..|+.+++.+++.
T Consensus 224 a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHT-CCCCHHHHHHHHT
T ss_pred HHHhC-CCCcHHHHHHHhh
Confidence 86555 4699999998874
No 46
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=1.2e-20 Score=205.16 Aligned_cols=168 Identities=24% Similarity=0.299 Sum_probs=81.4
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhHHhhhCC-CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH-Hhhcc
Q 007591 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~-l~~p~~~~~lg~-~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~-~~vG~ 408 (597)
++|+|++++|+.|...+.. ++.+..+..++. .+++++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 3699999999999988754 344433333333 35789999999999999999999999999999999999988 48885
Q ss_pred -chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEee-cCCCCCCCh
Q 007591 409 -GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA-TNRSDVLDP 486 (597)
Q Consensus 409 -~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaa-TNrpd~Ld~ 486 (597)
.+..++.+|..+... +++||+|.+.... .....++++++|+.+||++.....+ +++ ||+++.||+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 788999999998875 4588888765332 2233478999999999999776654 455 999999999
Q ss_pred hhhCCCCcceEEEecCCCHH-HHHHHH
Q 007591 487 ALRRPGRFDRVVMVETPDKI-GREAIL 512 (597)
Q Consensus 487 aLlRpgRFd~~I~v~~Pd~~-eR~~IL 512 (597)
+|+||||||+.|+++.|+.. .|.+|+
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999987 677776
No 47
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.80 E-value=2.7e-19 Score=184.76 Aligned_cols=205 Identities=18% Similarity=0.208 Sum_probs=143.8
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+...+.+|++++|++++++.|++.+. ....|..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 34456789999999999999988876 235567789999999999999999999999999999987642
Q ss_pred HhhccchHHHHHHHHHHHhc-----CCeEEEEcCcchhh-hhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEee
Q 007591 404 LYVGMGASRVRDLFARAKKE-----APSIIFIDEIDAVA-KSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (597)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~-----~P~ILfIDEIDaL~-~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaa 477 (597)
...++..+..+... .++||||||+|.+. .. ..+.|+..++.. ..++.+|++
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~---------------~~~~L~~~le~~--~~~~~iI~~ 142 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE---------------SQRHLRSFMEAY--SSNCSIIIT 142 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH---------------HHHHHHHHHHHH--GGGCEEEEE
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH---------------HHHHHHHHHHhC--CCCcEEEEE
Confidence 34555555544332 56899999999986 22 224455555432 245688889
Q ss_pred cCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH-------HhcCCCCCCC-CCCHHHHHHhCCCCCHHHHHHHHH
Q 007591 478 TNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH-------VSKKELPLAK-DIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 478 TNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~-------l~~~~l~l~~-dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
||.++.+++++++ ||. .+.+++|+.+++.+|++.+ +...++.+.+ + .++.++..+.| +.+++.+.++
T Consensus 143 ~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~g-d~R~a~~~L~ 217 (324)
T 3u61_B 143 ANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMK-VVAALVKKNFP-DFRKTIGELD 217 (324)
T ss_dssp ESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHH-HHHHHHHHTCS-CTTHHHHHHH
T ss_pred eCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHH-HHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999999 885 7999999999876654443 3445666655 4 47888888766 5666666666
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHH
Q 007591 550 EAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 550 eAal~A~r~~~~~It~~d~~~Al~r 574 (597)
.++ ....|+.+++.+++..
T Consensus 218 ~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 218 SYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHG------GGTCBCC---------
T ss_pred HHh------ccCCCCHHHHHHHhCC
Confidence 655 2234777777665543
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.80 E-value=6.8e-18 Score=176.51 Aligned_cols=216 Identities=22% Similarity=0.290 Sum_probs=162.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
..-+|++++|++.+++.|...+..-+. ...++.+++|+||||||||+||+++|++++.++...+++.+..
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 345789999999988888877654211 1245677999999999999999999999999988877754421
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC----------------CCC
Q 007591 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNS 470 (597)
Q Consensus 407 G~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~----------------~~~ 470 (597)
...+..++.. ...++|+||||+|.+.+.. + +.++..|+.+. ...
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~~~------------~---e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNKAV------------E---ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCHHH------------H---HHHHHHHHTSCCCC---------------C
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCHHH------------H---HHHHHHHHhcccceeeccCcccccccccCC
Confidence 1223333332 2346799999999886321 1 12222232211 012
Q ss_pred cEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007591 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 471 ~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
.+.++++|+++..|++.+++ ||...+.+++|+.+++.+|++..+...++.+.+++ +..||+++.| +++++.++++.
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~-~~~ia~~~~G-~~R~a~~ll~~ 225 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAA-AEMIAKRSRG-TPRIAIRLTKR 225 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHH-HHHHHHTSTT-CHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhcCC-ChHHHHHHHHH
Confidence 46777899999999999999 99888999999999999999999877666666553 7889999887 78999999999
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHh
Q 007591 551 AALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 551 Aal~A~r~~~~~It~~d~~~Al~rvi 576 (597)
+...|...+...|+.+++.+|++...
T Consensus 226 ~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 226 VRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 99888888888899999999998753
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=8.2e-19 Score=181.94 Aligned_cols=222 Identities=19% Similarity=0.245 Sum_probs=144.9
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC-------C-----
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------P----- 392 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------p----- 392 (597)
..++.+|++++|++++++.+..... . ..+.++||+||||||||++|++++..++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~---~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAV---D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHH---C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHhh---C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3456889999999998776433221 1 12335999999999999999999998862 2
Q ss_pred ---------------------eEEeecchhHHHhhccchHHHHHHHHHH---------HhcCCeEEEEcCcchhhhhcCC
Q 007591 393 ---------------------FISCSASEFVELYVGMGASRVRDLFARA---------KKEAPSIIFIDEIDAVAKSRDG 442 (597)
Q Consensus 393 ---------------------fi~is~se~~~~~vG~~~~~vr~lF~~A---------~~~~P~ILfIDEIDaL~~~r~~ 442 (597)
++.+..........|.. .+...+..+ ....++||||||||.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH---
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH---
Confidence 22211111111112210 011122211 0113679999999988532
Q ss_pred ccccccchHHHHHHHHHHHhhcC----CC-------CCCcEEEEeecCCCC-CCChhhhCCCCcceEEEecCC-CHHHHH
Q 007591 443 RFRIVSNDEREQTLNQLLTEMDG----FD-------SNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETP-DKIGRE 509 (597)
Q Consensus 443 ~~~~~~~~e~e~~Ln~LL~emd~----~~-------~~~~VIVIaaTNrpd-~Ld~aLlRpgRFd~~I~v~~P-d~~eR~ 509 (597)
..+.|+..|+. +. ....+++|++||..+ .++++|++ ||+..+.+++| +.+++.
T Consensus 160 ------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~ 225 (350)
T 1g8p_A 160 ------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRV 225 (350)
T ss_dssp ------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHH
T ss_pred ------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHH
Confidence 23444544442 11 123789999999754 89999999 99988999999 677777
Q ss_pred HHHHHHHh-----------------------------cCCCCCCCCCCHHHHHHhCCC---CCHHHHHHHHHHHHHHHHh
Q 007591 510 AILKVHVS-----------------------------KKELPLAKDIDLGDIASMTTG---FTGADLANLVNEAALLAGR 557 (597)
Q Consensus 510 ~ILk~~l~-----------------------------~~~l~l~~dvdl~~LA~~t~G---~SgaDL~~Lv~eAal~A~r 557 (597)
+|++.++. ..++.+++++ ++.|+....+ -+.+.+.++++.|...|..
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~-~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 226 EVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA-LYDCAALCIALGSDGLRGELTLLRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH-HHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHH
Confidence 88866311 1223444443 5566655543 2679999999999999988
Q ss_pred cCCccccHHHHHHHHHHHhcc
Q 007591 558 LNKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 558 ~~~~~It~~d~~~Al~rvi~g 578 (597)
+++..|+.+|+.+|+..++..
T Consensus 305 ~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 305 EGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp TTCSBCCHHHHHHHHHHHHGG
T ss_pred cCCCcCCHHHHHHHHHHHHhh
Confidence 888899999999999887643
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.79 E-value=3.4e-18 Score=164.72 Aligned_cols=204 Identities=21% Similarity=0.238 Sum_probs=151.1
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------- 392 (597)
..+..|++++|.+++++.|.+.+.. ...+..++|+||||||||++|++++++++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3456789999999999988887753 2334579999999999999999999876432
Q ss_pred -----------eEEeecchhHHHhhccchHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 393 -----------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
++.+.... ......++.++..+. ...|.+|+|||+|.+.. ..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~---------------~~~~ 144 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFN 144 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH---------------HHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH---------------HHHH
Confidence 22222211 112234555555443 23578999999998742 2446
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.|+..++.. ..++++|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++.+.+..+.++ .++.+++.+.
T Consensus 145 ~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~ 218 (250)
T 1njg_A 145 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAE 218 (250)
T ss_dssp HHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHH-HHHHHHHHHT
T ss_pred HHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHcC
Confidence 667766643 3467888899999999999988 65 5899999999999999999998766666554 3788999997
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
| +++++.++++.|+.. +...|+.+++++++
T Consensus 219 G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 219 G-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp T-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred C-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 7 899999999988543 23479999998875
No 51
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=2.5e-18 Score=178.95 Aligned_cols=242 Identities=19% Similarity=0.249 Sum_probs=169.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc------CCCeEEeecchh
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------EVPFISCSASEF 401 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el------g~pfi~is~se~ 401 (597)
...+++++|.++..+.|.+.+..... ...+..++|+||||||||+|++++++++ +.+++.++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 45568899999988887776543211 2456789999999999999999999988 889999997643
Q ss_pred HH------Hh----------hccchHH-HHHHHHHHHhc-CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhh
Q 007591 402 VE------LY----------VGMGASR-VRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 402 ~~------~~----------vG~~~~~-vr~lF~~A~~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~em 463 (597)
.. .. .+..... ...++...... .|+||+|||+|.+....+. ..+..++..+
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-----------~~l~~l~~~~ 156 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-----------DILYKLSRIN 156 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-----------THHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-----------HHHHHHhhch
Confidence 21 11 1111222 34444444433 3899999999999754321 2456677666
Q ss_pred cCCCCCCcEEEEeecCCC---CCCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCC
Q 007591 464 DGFDSNSAVIVLGATNRS---DVLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 464 d~~~~~~~VIVIaaTNrp---d~Ld~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA~~t~ 537 (597)
+.. ...++.+|++|+.+ +.+++.+.+ ||. +.+.+++++.++..++++.++... ...+.++ .++.++..+.
T Consensus 157 ~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~~ 232 (386)
T 2qby_A 157 SEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN-VIKLCAALAA 232 (386)
T ss_dssp HSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHH-HHHHHHHHHH
T ss_pred hhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence 654 34578888888877 567888887 664 589999999999999999887632 1233333 2566777765
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhccCCCHHHHhH
Q 007591 538 ---GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAV 593 (597)
Q Consensus 538 ---G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~-~k~~~~ls~~ek~i 593 (597)
| +++.+.+++..|+..|...+...|+.+|+..|+.+..... ...-..++..++.+
T Consensus 233 ~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~i 291 (386)
T 2qby_A 233 REHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLV 291 (386)
T ss_dssp HTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHH
Confidence 5 7888899999999999888888999999999998875332 22223456666554
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=6.5e-19 Score=194.92 Aligned_cols=224 Identities=16% Similarity=0.210 Sum_probs=150.5
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhc--ChhHHhhhCC---CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecc
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLR--SPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~--~p~~~~~lg~---~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~s 399 (597)
...+.+|+|++|++++++.|.+.+.... .+..|...|. .+++++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3456789999999999999998886522 1112222222 3568999999999999999999999999999999998
Q ss_pred hhHHHhhccch-------HHHHHHHHHH-----HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC
Q 007591 400 EFVELYVGMGA-------SRVRDLFARA-----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467 (597)
Q Consensus 400 e~~~~~vG~~~-------~~vr~lF~~A-----~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~ 467 (597)
++......... ..+..+|..+ ....++||||||+|.+....+ ..++.|+..++.
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~------------~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR------------GGVGQLAQFCRK-- 177 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST------------THHHHHHHHHHH--
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH------------HHHHHHHHHHHh--
Confidence 76543321100 0123334433 235688999999999875322 123444444442
Q ss_pred CCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHH
Q 007591 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANL 547 (597)
Q Consensus 468 ~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~L 547 (597)
....+++|+++.....+. .+. |+...+.|++|+.+++.+++...+.+.++.+.+++ ++.|++.+.| +.+.+.++
T Consensus 178 ~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~-l~~la~~s~G-diR~~i~~ 251 (516)
T 1sxj_A 178 TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTRG-DIRQVINL 251 (516)
T ss_dssp CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHTTT-CHHHHHHH
T ss_pred cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-cHHHHHHH
Confidence 234466665554444444 343 45568999999999999999998877777777764 8899999876 55666666
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHH
Q 007591 548 VNEAALLAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 548 v~eAal~A~r~~~~~It~~d~~~Al~ 573 (597)
+..++ . ....|+.+++.+++.
T Consensus 252 L~~~~---~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 252 LSTIS---T--TTKTINHENINEISK 272 (516)
T ss_dssp HTHHH---H--HSSCCCTTHHHHHHH
T ss_pred HHHHH---h--cCCCCchHHHHHHHH
Confidence 55443 2 334577777766655
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.79 E-value=1.1e-18 Score=181.01 Aligned_cols=215 Identities=19% Similarity=0.151 Sum_probs=150.6
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh--HHHhhc
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF--VELYVG 407 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~--~~~~vG 407 (597)
.+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++... .....|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 356799999998887766542 2479999999999999999999999999999887411 111222
Q ss_pred cchHH-HHHHHHHHHhcC---CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC---------CCCCcEEE
Q 007591 408 MGASR-VRDLFARAKKEA---PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIV 474 (597)
Q Consensus 408 ~~~~~-vr~lF~~A~~~~---P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~---------~~~~~VIV 474 (597)
..... ....|. .... .+||||||+|.+... +.+.|+..|+.. ..+..++|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~---------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK---------------VQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH---------------HHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCHH---------------HHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 11000 000000 0111 269999999987532 334555555432 12346788
Q ss_pred EeecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----------------------CCCCCCCC
Q 007591 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----------------------ELPLAKDI 527 (597)
Q Consensus 475 IaaTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~----------------------~l~l~~dv 527 (597)
|+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++... ++.+.+++
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 88888553 38999999 999899999999999999999987642 22233222
Q ss_pred CHHHHHHhC-------------------CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 007591 528 DLGDIASMT-------------------TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 528 dl~~LA~~t-------------------~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (597)
++.++... .|.|++.+.++++.|...|...++..|+.+|+.+++..++..
T Consensus 232 -~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 232 -EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp -HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 34443321 256899999999999999999999999999999999988743
No 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=4.9e-18 Score=176.05 Aligned_cols=210 Identities=19% Similarity=0.161 Sum_probs=153.1
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC------CCeEEee
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------VPFISCS 397 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg------~pfi~is 397 (597)
+...+.+|++++|++++++.|...+.. ... .++||+||||||||++|+++|++++ ..++.++
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKS-----------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 344677899999999998887776531 122 3499999999999999999999853 4688888
Q ss_pred cchhHHHhhccchHHHHHHHHHHH----------------hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHH
Q 007591 398 ASEFVELYVGMGASRVRDLFARAK----------------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (597)
Q Consensus 398 ~se~~~~~vG~~~~~vr~lF~~A~----------------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~ 461 (597)
+++.. +...+++.+.... ...+.||||||+|.+... ..+.|+.
T Consensus 97 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~---------------~~~~Ll~ 155 (353)
T 1sxj_D 97 ASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD---------------AQSALRR 155 (353)
T ss_dssp SSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH---------------HHHHHHH
T ss_pred ccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH---------------HHHHHHH
Confidence 76531 1122222222211 124569999999988532 2255666
Q ss_pred hhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 007591 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (597)
Q Consensus 462 emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~Sg 541 (597)
.|+.... ...+|++||.++.+++++.+ |+. .+.+++|+.++...+++..+...++.+.++ .++.|+..+.| +.
T Consensus 156 ~le~~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~ 228 (353)
T 1sxj_D 156 TMETYSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDG-VLERILDISAG-DL 228 (353)
T ss_dssp HHHHTTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHH-HHHHHHHHTSS-CH
T ss_pred HHHhcCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-CH
Confidence 6664433 45666688899999999998 776 899999999999999999988777777666 48889999987 78
Q ss_pred HHHHHHHHHHHHHHHhcCCc-cccHHHHHHHHH
Q 007591 542 ADLANLVNEAALLAGRLNKV-VVEKIDFIHAVE 573 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~-~It~~d~~~Al~ 573 (597)
+.+.++++.++..+.+.+.. .|+.+|+.+++.
T Consensus 229 r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 229 RRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 88888888888776554433 799998887654
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.76 E-value=3.1e-18 Score=181.17 Aligned_cols=237 Identities=22% Similarity=0.269 Sum_probs=149.2
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHH-----------------hhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeE
Q 007591 333 DVAGVDEAKEELEEIVEF-LRSPDKY-----------------IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~-l~~p~~~-----------------~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi 394 (597)
+|+|++++|+.|...+.. ++..... ......++.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 589999999999988732 1111100 0112345678999999999999999999999999999
Q ss_pred EeecchhH-HHhhccc-hHHHHHHHHHHH----hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-
Q 007591 395 SCSASEFV-ELYVGMG-ASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD- 467 (597)
Q Consensus 395 ~is~se~~-~~~vG~~-~~~vr~lF~~A~----~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~- 467 (597)
.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.... ...+...+...+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS-ITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------CHHHHHHHHHHHHCCEE
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc-eecccchHHHHHHHHHHhhccce
Confidence 99998875 3444543 344556655432 23578999999999987643211 0111112346777888887531
Q ss_pred ------------------CCCcEEEEeecCCC-----------------------------------------CCCChhh
Q 007591 468 ------------------SNSAVIVLGATNRS-----------------------------------------DVLDPAL 488 (597)
Q Consensus 468 ------------------~~~~VIVIaaTNrp-----------------------------------------d~Ld~aL 488 (597)
...++++|+++|.. ..+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 11456777777621 1256777
Q ss_pred hCCCCcceEEEecCCCHHHHHHHHHH----H-------HhcC--CCCCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 007591 489 RRPGRFDRVVMVETPDKIGREAILKV----H-------VSKK--ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAAL 553 (597)
Q Consensus 489 lRpgRFd~~I~v~~Pd~~eR~~ILk~----~-------l~~~--~l~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal 553 (597)
.+ ||+..+.+++++.++..+|+.. + +... .+.+.++ .++.|+.... ....++|.++++.++.
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE-AIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH-HHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 77 8988999999999999998862 1 1111 2233443 2677777654 2478999999999887
Q ss_pred HHHhcC------CccccHHHHHHHHH
Q 007591 554 LAGRLN------KVVVEKIDFIHAVE 573 (597)
Q Consensus 554 ~A~r~~------~~~It~~d~~~Al~ 573 (597)
.+..+. ...|+.+++.++..
T Consensus 338 ~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 338 DIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 765432 23588888876543
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.75 E-value=3.1e-17 Score=171.72 Aligned_cols=240 Identities=16% Similarity=0.150 Sum_probs=168.0
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCC--eeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchh
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR--GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~--gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~ 401 (597)
+..+++++|.++..+.|.+.+..... ...+. .++|+||||||||++++++++++ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34457899999999988887764211 12334 89999999999999999999988 678899987643
Q ss_pred HH------Hh----------hccchHHHHH-HHHHHH-hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhh
Q 007591 402 VE------LY----------VGMGASRVRD-LFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (597)
Q Consensus 402 ~~------~~----------vG~~~~~vr~-lF~~A~-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~em 463 (597)
.. .. .+.....+.+ +..... ...|.||+|||+|.+. ...++.|+..+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------~~~~~~L~~~~ 149 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------PDILSTFIRLG 149 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------hHHHHHHHHHH
Confidence 21 10 0111222222 222222 2458899999999872 23456666666
Q ss_pred cCCCC--CCcEEEEeecCCC---CCCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHh
Q 007591 464 DGFDS--NSAVIVLGATNRS---DVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASM 535 (597)
Q Consensus 464 d~~~~--~~~VIVIaaTNrp---d~Ld~aLlRpgRFd~-~I~v~~Pd~~eR~~ILk~~l~~~--~l~l~~dvdl~~LA~~ 535 (597)
+.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+... ...+.++ .++.++..
T Consensus 150 ~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~ 226 (389)
T 1fnn_A 150 QEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSED-ILQMIADI 226 (389)
T ss_dssp TCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHH-HHHHHHHH
T ss_pred HhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHH
Confidence 54322 1478888888887 678888877 7764 89999999999999999988641 1233333 37778888
Q ss_pred CC--------CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhccCCCHHHHhH
Q 007591 536 TT--------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAV 593 (597)
Q Consensus 536 t~--------G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~-~k~~~~ls~~ek~i 593 (597)
+. +..++.+.++++.|+..|..++...|+.+++..++....... ...-..+++.++.+
T Consensus 227 ~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~ 293 (389)
T 1fnn_A 227 TGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLF 293 (389)
T ss_dssp HSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHH
T ss_pred HhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHH
Confidence 83 237899999999999999888888999999999998875432 22223466666554
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=8.2e-18 Score=193.67 Aligned_cols=223 Identities=21% Similarity=0.270 Sum_probs=164.2
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEee
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is 397 (597)
+-+|++++|.++..+.+.+++. ...+.++||+||||||||++|+++|.++ +..++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4578999999988777666542 2356789999999999999999999976 66788888
Q ss_pred cchhH--HHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEE
Q 007591 398 ASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (597)
Q Consensus 398 ~se~~--~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVI 475 (597)
+..+. ..+.|..+..++.+|..+....++||||||+|.+.+..+.. .+. ....+.|. .+-....+.+|
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---~~~---~~~~~~L~----~~l~~~~~~~I 319 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQ---VDAANLIK----PLLSSGKIRVI 319 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS---SCH---HHHHHHHS----SCSSSCCCEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC---cch---HHHHHHHH----HHHhCCCeEEE
Confidence 77776 35678888899999999988889999999999997654321 011 12223232 23335678889
Q ss_pred eecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCC-----CCCH
Q 007591 476 GATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTT-----GFTG 541 (597)
Q Consensus 476 aaTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~----~~l~l~~dvdl~~LA~~t~-----G~Sg 541 (597)
++||.++ .+|++|.+ ||+ .+.++.|+.+++.+|++.++.. .++.+.++ .+..++..+. .+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCc
Confidence 9998753 57899998 998 7999999999999999987754 23444443 2555555443 3567
Q ss_pred HHHHHHHHHHHHHHHh----cCCccccHHHHHHHHHHHh
Q 007591 542 ADLANLVNEAALLAGR----LNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r----~~~~~It~~d~~~Al~rvi 576 (597)
.++.+++++|+..+.. .....|+.+|+.+++.+..
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 7899999998877655 3456799999999998765
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.75 E-value=9.3e-18 Score=170.99 Aligned_cols=202 Identities=24% Similarity=0.264 Sum_probs=146.3
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecc
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~s 399 (597)
...+.+|++++|++++++.|.+.+.. ...+ ++||+||||||||++|+++++++ +.+++.++++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 34567899999999998887766531 1233 39999999999999999999986 4568888887
Q ss_pred hhHHHhhccchHHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE
Q 007591 400 EFVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI 473 (597)
+... ...++..+.... ...++||+|||+|.+... ..+.|+..++.. ..+++
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~L~~~le~~--~~~~~ 134 (319)
T 2chq_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------------AQAALRRTMEMY--SKSCR 134 (319)
T ss_dssp STTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH---------------HHHTTGGGTSSS--SSSEE
T ss_pred cccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH---------------HHHHHHHHHHhc--CCCCe
Confidence 6422 112223333222 144789999999998532 235566666643 34678
Q ss_pred EEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007591 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 474 VIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
+|++||.++.+++++.+ |+. .+.+++|+.+++.+++..++.+.++.+.++ .++.|+..+.| +.+.+.++++.++.
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~l~~l~~~~~G-~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITED-GLEALIYISGG-DFRKAINALQGAAA 209 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHH-HHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 88889999999999998 775 899999999999999999998877776665 37788877765 67777777766553
Q ss_pred HHHhcCCccccHHHHHHH
Q 007591 554 LAGRLNKVVVEKIDFIHA 571 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~A 571 (597)
. ...|+.+++.++
T Consensus 210 ~-----~~~i~~~~v~~~ 222 (319)
T 2chq_A 210 I-----GEVVDADTIYQI 222 (319)
T ss_dssp S-----SSCBCHHHHHHH
T ss_pred c-----CCCCCHHHHHHH
Confidence 2 235776666544
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.74 E-value=7.7e-18 Score=172.01 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=140.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH-----
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----- 403 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~----- 403 (597)
++++|++++++.|...+......- ....++..++||+||||||||++|+++|+.+ +.+++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999998886532100 0012334579999999999999999999987 67899999886533
Q ss_pred Hhhccch-----HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---------CC
Q 007591 404 LYVGMGA-----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (597)
Q Consensus 404 ~~vG~~~-----~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------~~ 469 (597)
...|... .....+.........+||||||+|.+.. ...+.|+..|+... .-
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 2222100 0001222333344458999999998753 23455666665321 01
Q ss_pred CcEEEEeecCC--------------------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----
Q 007591 470 SAVIVLGATNR--------------------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---- 519 (597)
Q Consensus 470 ~~VIVIaaTNr--------------------------pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~---- 519 (597)
.++++|+|||. ...++++|++ ||+..+.+.+|+.+++.+|++.++.+.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36789999998 4578889987 999999999999999999999887652
Q ss_pred -----CCCCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHHHHH
Q 007591 520 -----ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAG 556 (597)
Q Consensus 520 -----~l~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal~A~ 556 (597)
.+.+.++ .++.|+.... ..+.++|.++++.++..+.
T Consensus 237 ~~~~~~~~~~~~-~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 237 AEKRISLELTEA-AKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HTTTCEEEECHH-HHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HhCCcEEEeCHH-HHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 1223333 3677787776 5688999999999877654
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=5.4e-17 Score=165.60 Aligned_cols=203 Identities=18% Similarity=0.227 Sum_probs=149.8
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecch
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se 400 (597)
..+.+|++++|++++++.|.+.+.. .+.|. +||+||||+|||++|+++++++ +.+++.+++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 4567899999999999988887642 23344 9999999999999999999985 45678887765
Q ss_pred hHHHhhccchHHHHHHHHHHH-------hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE
Q 007591 401 FVELYVGMGASRVRDLFARAK-------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~-------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI 473 (597)
.. +...+++++.... ...++||+|||+|.+... ..+.|+..++.. ..+++
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~le~~--~~~~~ 139 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---------------AQQALRRTMELY--SNSTR 139 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH---------------HHHTTHHHHHHT--TTTEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH---------------HHHHHHHHHhcc--CCCce
Confidence 31 2345566666554 334789999999988532 234455555532 34567
Q ss_pred EEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 007591 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 474 VIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal 553 (597)
+|++||.++.+.+++.+ |+. .+.+++|+.++..++++.++...++.+.++ .++.++..+.| +.+.+.++++.++.
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~G-~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTND-GLEAIIFTAEG-DMRQAINNLQSTVA 214 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 77788889999999988 665 899999999999999999987766666655 47788888866 77777777776653
Q ss_pred HHHhcCCccccHHHHHHHHH
Q 007591 554 LAGRLNKVVVEKIDFIHAVE 573 (597)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~ 573 (597)
.. ..|+.+++.+++.
T Consensus 215 ~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 215 GH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HH-----SSBCHHHHHHHHT
T ss_pred cC-----CCcCHHHHHHHHC
Confidence 21 3578877776654
No 61
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=5.8e-18 Score=157.93 Aligned_cols=159 Identities=25% Similarity=0.380 Sum_probs=115.3
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEee
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is 397 (597)
+.+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|++++.++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4568899999987766665542 1 345689999999999999999999986 78999999
Q ss_pred cchhH--HHhhccchHHHHHHHHHHH-hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 398 ASEFV--ELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 398 ~se~~--~~~vG~~~~~vr~lF~~A~-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
+.++. ..+.+.....+..++..+. ...++||||||+|.+...+... ........+..++ + ..++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~----~~~~~~~~l~~~~---~----~~~~~~ 154 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD----GAMDAGNMLKPAL---A----RGELHC 154 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------CCCCHHHHHHHH---H----TTSCCE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc----chHHHHHHHHHhh---c----cCCeEE
Confidence 88775 2344555667778887664 4568899999999997554211 1111122333333 2 345778
Q ss_pred EeecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHH
Q 007591 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAIL 512 (597)
Q Consensus 475 IaaTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~IL 512 (597)
|++||.++ .+++++.+ ||+ .+.+++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888875 78999999 998 6999999999998876
No 62
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.73 E-value=8.9e-17 Score=167.76 Aligned_cols=204 Identities=21% Similarity=0.230 Sum_probs=150.7
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC-------------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------- 392 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------- 392 (597)
..+.+|++++|++++++.|...+.. .+.+..+||+||||||||++|+++|+.++..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3456799999999999998887753 2345679999999999999999999987532
Q ss_pred -----------eEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHH
Q 007591 393 -----------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (597)
Q Consensus 393 -----------fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln 457 (597)
++.+++.. ..+...++.+++.+.. ..+.||+|||+|.+.. ...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~---------------~~~~ 137 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFN 137 (373)
T ss_dssp HHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH---------------HHHH
T ss_pred HHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH---------------HHHH
Confidence 22222211 0123346677776653 3468999999998742 2346
Q ss_pred HHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 458 ~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.|+..++.. ..++++|++|+.+..+.+.+.+ |+ ..+.+++|+.++..++++.++.+.++.++++ .++.++..+.
T Consensus 138 ~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~-a~~~l~~~~~ 211 (373)
T 1jr3_A 138 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR-ALQLLARAAE 211 (373)
T ss_dssp HHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHSS
T ss_pred HHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHCC
Confidence 677777643 3467888888888899999988 65 5899999999999999999988777766555 3778899997
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 538 G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
| +++++.++++.+...+ ...|+.+++.+++
T Consensus 212 G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 212 G-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp S-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 6 8899999998876443 3457877776553
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.73 E-value=2.9e-17 Score=179.73 Aligned_cols=190 Identities=22% Similarity=0.342 Sum_probs=136.4
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEe
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~i 396 (597)
.+-+|++|+|.++..+.+.+++.. ....++||+||||||||++|+++|..+ +.+|+.+
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 356789999999988887776642 234579999999999999999999986 7889999
Q ss_pred ecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEe
Q 007591 397 SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (597)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIa 476 (597)
++. ..+.|..+..++.+|..+....|+||||| + .. ...+.|+..|+ ...+.+|+
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~~-------------~a~~~L~~~L~----~g~v~vI~ 296 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-AI-------------DASNILKPSLA----RGELQCIG 296 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-ch-------------hHHHHHHHhhc----CCCEEEEe
Confidence 887 67788888899999999998889999999 1 00 12234444443 45789999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCC-----CCHH
Q 007591 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTG-----FTGA 542 (597)
Q Consensus 477 aTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~----~~l~l~~dvdl~~LA~~t~G-----~Sga 542 (597)
+||.++ .+|+++.| ||. .|.|+.|+.+++.+|++.++.. .++.+.++ .+..++..+.+ +.+.
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~-al~~l~~~s~~~~~~~~lp~ 372 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPD 372 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHhccCcCCc
Confidence 999987 68999999 998 5999999999999999988765 34444433 25566654433 3456
Q ss_pred HHHHHHHHHHHHHHhc
Q 007591 543 DLANLVNEAALLAGRL 558 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~ 558 (597)
+..+++.+|+..+..+
T Consensus 373 ~ai~ll~~a~~~~~~~ 388 (468)
T 3pxg_A 373 KAIDLIDEAGSKVRLR 388 (468)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888998888665544
No 64
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=174.07 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=147.7
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEeecchhHH
Q 007591 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE 403 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is~se~~~ 403 (597)
+.|.++..+.|...+.. .+....|.+++|+||||||||++++++++++ .+.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~--------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD--------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 56666666666655543 1224578899999999999999999999987 35688899865432
Q ss_pred ----------Hhh------ccchHHHHHHHHHH--HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC
Q 007591 404 ----------LYV------GMGASRVRDLFARA--KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (597)
Q Consensus 404 ----------~~v------G~~~~~vr~lF~~A--~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~ 465 (597)
.+. +.....++.+|... ....++||+|||+|.|. . ..++..++....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~------------q~~L~~l~~~~~- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--S------------EKILQYFEKWIS- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--C------------THHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--c------------chHHHHHHhccc-
Confidence 222 23455678888875 35668899999999997 1 235566665443
Q ss_pred CCCCCcEEEEeecCCCCCC----ChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCC------------------
Q 007591 466 FDSNSAVIVLGATNRSDVL----DPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKKELP------------------ 522 (597)
Q Consensus 466 ~~~~~~VIVIaaTNrpd~L----d~aLlRpgRFd-~~I~v~~Pd~~eR~~ILk~~l~~~~l~------------------ 522 (597)
....+++||+++|..+.. ++++.+ ||. .+|.|++++.++..+|++.++....-.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 235678999999987654 444555 786 689999999999999999998763110
Q ss_pred -----------------CCCCCCHHHHHHh---CCCCCHHHHHHHHHHHHHHHHhc---------CCccccHHHHHHHHH
Q 007591 523 -----------------LAKDIDLGDIASM---TTGFTGADLANLVNEAALLAGRL---------NKVVVEKIDFIHAVE 573 (597)
Q Consensus 523 -----------------l~~dvdl~~LA~~---t~G~SgaDL~~Lv~eAal~A~r~---------~~~~It~~d~~~Al~ 573 (597)
+.++ .++.+|+. ..| ..|...++|+.|+..|.++ ++..||.+.+..++.
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~-ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~ 313 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNK-ITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFS 313 (318)
T ss_dssp -------CTTEEEECEECCHH-HHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHH
T ss_pred ccccccccccccccccccCHH-HHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHH
Confidence 1122 25566663 333 5677778999999888653 334566666666666
Q ss_pred HHh
Q 007591 574 RSI 576 (597)
Q Consensus 574 rvi 576 (597)
.++
T Consensus 314 ~~~ 316 (318)
T 3te6_A 314 EAI 316 (318)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.1e-16 Score=163.62 Aligned_cols=188 Identities=23% Similarity=0.271 Sum_probs=138.2
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC-----CCeEEeecc
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS 399 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg-----~pfi~is~s 399 (597)
...+.+|++++|++++++.|...+..- .. .++||+||||||||++|+++++++. .+++.++++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 345678999999999999988877531 22 2499999999999999999999863 457788876
Q ss_pred hhHHHhhccchHHHHHHHHHHH------hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE
Q 007591 400 EFVELYVGMGASRVRDLFARAK------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~------~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI 473 (597)
+.... ..++..+.... ...++||+|||+|.+... ..+.|+..|+.. ..++.
T Consensus 86 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------------~~~~L~~~le~~--~~~~~ 142 (327)
T 1iqp_A 86 DERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---------------AQQALRRTMEMF--SSNVR 142 (327)
T ss_dssp CHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH---------------HHHHHHHHHHHT--TTTEE
T ss_pred ccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH---------------HHHHHHHHHHhc--CCCCe
Confidence 54321 11222222211 145789999999988532 235566666643 34567
Q ss_pred EEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 007591 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (597)
Q Consensus 474 VIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 552 (597)
+|++||.++.+.+++.+ |+. .+.+++|+.++..++++.++...++.+.++ .++.|+..+.| +.+.+.++++.++
T Consensus 143 ~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 143 FILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHH-HHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 78889999999999988 776 789999999999999999998777766655 37888888866 7788888877655
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.70 E-value=5.4e-17 Score=187.10 Aligned_cols=199 Identities=21% Similarity=0.281 Sum_probs=140.4
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhcc
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM 408 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~ 408 (597)
++|+|++++++.+.+.+........ ...++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 5699999999999988876432100 001122269999999999999999999987 7899999999998766544
Q ss_pred chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---------CCCcEEEEeecC
Q 007591 409 GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATN 479 (597)
Q Consensus 409 ~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~---------~~~~VIVIaaTN 479 (597)
...+....+...++||||||||.+.. .+++.|+..|+... ...++++|+|||
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP---------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH---------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH---------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 12233444556678999999998742 34566666666421 234679999999
Q ss_pred CCCC------------CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC---------CCCCCCCCCHHHHHHh--C
Q 007591 480 RSDV------------LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK---------ELPLAKDIDLGDIASM--T 536 (597)
Q Consensus 480 rpd~------------Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~---------~l~l~~dvdl~~LA~~--t 536 (597)
.+.. +.|+|++ ||+..|.|++|+.+++.+|++.++... .+.+.++ .++.|+.. .
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~ 705 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDA-AKAKVAEEGVD 705 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHH-HHHHHHGGGCC
T ss_pred CChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHH-HHHHHHHhCCC
Confidence 7643 7888888 999999999999999999998887542 1223333 26667663 3
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 007591 537 TGFTGADLANLVNEAALLA 555 (597)
Q Consensus 537 ~G~SgaDL~~Lv~eAal~A 555 (597)
..+..++|.++++++...+
T Consensus 706 ~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 706 LEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp TTTTTTTHHHHHHHHTHHH
T ss_pred CCCCChHHHHHHHHHHHHH
Confidence 4567789999999876554
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=8.6e-17 Score=187.93 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=138.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEee
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is 397 (597)
+-+|++++|.++....+.+++. ...++++||+||||||||++|+++|+++ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 5679999999987666666542 1345679999999999999999999987 88999999
Q ss_pred cchhH--HHhhccchHHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 398 ASEFV--ELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 398 ~se~~--~~~vG~~~~~vr~lF~~A~~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
++.+. ..+.|..+..++.+|..+... .|+||||||+|.+.+..... +. ....+.|...++ ...+.+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----g~---~~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE----GA---VDAGNMLKPALA----RGELRL 302 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------HHHHH----TTCCCE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc----ch---HHHHHHHHHHHh----CCCeEE
Confidence 98886 467788888999999999875 68999999999997554321 11 122333444443 345788
Q ss_pred EeecCCCC----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHh-----CCCCCH
Q 007591 475 LGATNRSD----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGFTG 541 (597)
Q Consensus 475 IaaTNrpd----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~~-----t~G~Sg 541 (597)
|++||.++ .+|++|.| ||+. +.++.|+.+++.+|++.++... ++.+.++ .+..++.. +..+.+
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~-al~~~~~ls~r~i~~~~lp 378 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDS-AIIAAATLSHRYITERRLP 378 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHCCSSCTH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHH-HHHHHHHHHhhhcccccCh
Confidence 88888774 57999999 9985 9999999999999998776532 3444443 25555553 345678
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007591 542 ADLANLVNEAALLAGRL 558 (597)
Q Consensus 542 aDL~~Lv~eAal~A~r~ 558 (597)
.....++.+|+..+...
T Consensus 379 ~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 379 DKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88999999988776544
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=2e-16 Score=182.35 Aligned_cols=190 Identities=22% Similarity=0.327 Sum_probs=136.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEe
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~i 396 (597)
..-++++++|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 345789999999998888776642 345679999999999999999999986 8888888
Q ss_pred ecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEe
Q 007591 397 SASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (597)
Q Consensus 397 s~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIa 476 (597)
++ ...|.|..+.+++.+|..+....|+||||| +. ....+.|+..|+ ...+.+|+
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--------------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTT----SSSCEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--------------hhHHHHHHHHHh----cCCEEEEe
Confidence 87 556788888999999999999999999999 10 012244444443 56789999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHh-----CCCCCHH
Q 007591 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGFTGA 542 (597)
Q Consensus 477 aTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~----~l~l~~dvdl~~LA~~-----t~G~Sga 542 (597)
+||..+ .+|+++.| ||. .|.|+.|+.+++.+||+.++... ++.+.++ .+..++.. +.++.+.
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~-al~~~~~~s~~~i~~~~~p~ 372 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD-AIEAAVKLSDRYISDRFLPD 372 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH-HHHHHHHHHHHSSCCSCTTH
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhcccccCcCCc
Confidence 999988 79999999 995 69999999999999999877652 3333322 24444443 3456778
Q ss_pred HHHHHHHHHHHHHHhc
Q 007591 543 DLANLVNEAALLAGRL 558 (597)
Q Consensus 543 DL~~Lv~eAal~A~r~ 558 (597)
+...++.+|+..+..+
T Consensus 373 ~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 373 KAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8899999987766544
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=9.3e-17 Score=184.87 Aligned_cols=197 Identities=21% Similarity=0.332 Sum_probs=142.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCC----CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHH---
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGA----RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~----~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~--- 404 (597)
.+|+|++++++.+...+.... .|. ++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~-------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH-------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 358999999998888776432 122 233479999999999999999999999999999999988653
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC-------
Q 007591 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS------- 468 (597)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~------- 468 (597)
|+|..+. ..+....+...++||||||||.+.. .+++.|+..|+...-
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~---------------~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH---------------HHHHHHHHHHHHSEEEETTTEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH---------------HHHHHHHHHhcCcEEEcCCCCE
Confidence 3332221 2234445556678999999998642 356777777763210
Q ss_pred --CCcEEEEeecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--
Q 007591 469 --NSAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-- 519 (597)
Q Consensus 469 --~~~VIVIaaTNrpd-------------------------~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~-- 519 (597)
..+++||+|||... .++|+|++ ||+..|.|++|+.+++..|++.++.+.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~ 671 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQV 671 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 14688999999853 67888888 999999999999999999999988632
Q ss_pred -------CCCCCCCCCHHHHHHhC--CCCCHHHHHHHHHHHHHHH
Q 007591 520 -------ELPLAKDIDLGDIASMT--TGFTGADLANLVNEAALLA 555 (597)
Q Consensus 520 -------~l~l~~dvdl~~LA~~t--~G~SgaDL~~Lv~eAal~A 555 (597)
.+.+.++ .++.|+... ..+..++|.++++.++..+
T Consensus 672 ~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 672 QLDQKGVSLEVSQE-ARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp HHHHTTEEEEECHH-HHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred HHHHCCcEEEeCHH-HHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 1233333 266677654 2445789999998877643
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.68 E-value=2.8e-16 Score=157.80 Aligned_cols=205 Identities=21% Similarity=0.193 Sum_probs=124.4
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC---CCeEEeecchhHHHh
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELY 405 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~se~~~~~ 405 (597)
.+|++++|.+++...+.+.+..+. ..+.++||+||||||||++|++++..+. .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 579999999999888887776532 2346799999999999999999999874 799999998763321
Q ss_pred -----hccchHH-------HHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC-------
Q 007591 406 -----VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------- 466 (597)
Q Consensus 406 -----vG~~~~~-------vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~------- 466 (597)
.|..... ....|..+ .+++|||||||.+.... ...|+..|+..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~~---------------q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMMV---------------QEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHHH---------------HHHHHHHHHHCEECCCCC
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHHH---------------HHHHHHHHHhCCeecCCC
Confidence 1211000 01223333 34699999999886322 23444444421
Q ss_pred --CCCCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHH----HHHHHHHHh----cCCC----CCCC
Q 007591 467 --DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVS----KKEL----PLAK 525 (597)
Q Consensus 467 --~~~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR----~~ILk~~l~----~~~l----~l~~ 525 (597)
.....+.+|+|||.+ ..++++|.+ ||.. +.+..|+..+| ..+++.++. +.+. .+.+
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~ 211 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTE 211 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCH
Confidence 112457888999875 246788887 8863 45556665554 334444433 2333 2222
Q ss_pred CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHH
Q 007591 526 DIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (597)
Q Consensus 526 dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (597)
+ .++.|.......+.++|.++++.++..+. ...|+.+|+
T Consensus 212 ~-a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 212 R-ARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp H-HHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred H-HHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 2 24556666544578999999999887662 345666655
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.66 E-value=8.9e-17 Score=150.04 Aligned_cols=152 Identities=26% Similarity=0.366 Sum_probs=109.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----------CCCeEEee
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCS 397 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----------g~pfi~is 397 (597)
+.+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|++++.++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4578999999987666655542 2 335689999999999999999999986 78899998
Q ss_pred cchhHHH--hhccchHHHHHHHHHHHhc-CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 398 ASEFVEL--YVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 398 ~se~~~~--~vG~~~~~vr~lF~~A~~~-~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
+..+... +.+.....+..++..+... .|+||||||+|.+...+... .... ...+.+...++ ...+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~---~~~~~l~~~~~----~~~~~i 155 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA---EGAL---DAGNILKPMLA----RGELRC 155 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC---TTSC---CTHHHHHHHHH----TTCSCE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc---ccch---HHHHHHHHHHh----cCCeeE
Confidence 8776532 3445556677788777665 68899999999997543210 0001 12233333343 355788
Q ss_pred EeecCCCC-----CCChhhhCCCCcceEEEecCCC
Q 007591 475 LGATNRSD-----VLDPALRRPGRFDRVVMVETPD 504 (597)
Q Consensus 475 IaaTNrpd-----~Ld~aLlRpgRFd~~I~v~~Pd 504 (597)
|++||.++ .+++++.+ ||+ .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 88998775 68999999 998 59999885
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.66 E-value=7.1e-17 Score=178.18 Aligned_cols=210 Identities=17% Similarity=0.163 Sum_probs=135.5
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecch-hHHHhhcc-
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASE-FVELYVGM- 408 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se-~~~~~vG~- 408 (597)
.|+|++++++.+...+.. ..+|||+||||||||++|+++|..++ .+|..+++.- ..+...|.
T Consensus 23 ~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 488999988777655431 24799999999999999999999884 4666655531 11222221
Q ss_pred c-hH-HHHHHHHHHHhc---CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC---------CCCCcEEE
Q 007591 409 G-AS-RVRDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIV 474 (597)
Q Consensus 409 ~-~~-~vr~lF~~A~~~---~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~---------~~~~~VIV 474 (597)
. .. .-...|..+... .++|||||||+.+.. .+.+.|+..|+.. ..+.. ++
T Consensus 89 ~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~---------------~~q~~LL~~lee~~v~i~G~~~~~~~~-~i 152 (500)
T 3nbx_X 89 SIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERQFRNGAHVEKIPMR-LL 152 (500)
T ss_dssp C----------CBCCTTSGGGCSEEEEESGGGCCH---------------HHHHHHHHHHHSSEEECSSSEEECCCC-EE
T ss_pred cHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH---------------HHHHHHHHHHHHHhccCCCCcCCcchh-hh
Confidence 1 11 012223322222 467999999986542 3446677777531 11223 45
Q ss_pred EeecCCCC---CCChhhhCCCCcceEEEecCCCH-HHHHHHHHHHHhcC-----------------------CCCCCCCC
Q 007591 475 LGATNRSD---VLDPALRRPGRFDRVVMVETPDK-IGREAILKVHVSKK-----------------------ELPLAKDI 527 (597)
Q Consensus 475 IaaTNrpd---~Ld~aLlRpgRFd~~I~v~~Pd~-~eR~~ILk~~l~~~-----------------------~l~l~~dv 527 (597)
|+|||.+. .+.+++++ ||...+.+++|+. +++.+|++.+.... ++.+++++
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v 230 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV 230 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH
Confidence 66777532 24468998 9999999999987 77888888654321 12222222
Q ss_pred CHHHHHHhC---------CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 007591 528 DLGDIASMT---------TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 528 dl~~LA~~t---------~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi 576 (597)
.+.++... .|.|++.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 231 -~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 231 -FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp -HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred -HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 34444332 478999999999999999999999999999988 544443
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=9.9e-16 Score=159.81 Aligned_cols=209 Identities=19% Similarity=0.224 Sum_probs=145.1
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcC-----CCeEEeec
Q 007591 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 398 (597)
Q Consensus 324 ~~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg-----~pfi~is~ 398 (597)
+...+.+|++++|++++++.|...+.. .+.|. +||+||||||||++|+++|+.+. ..+..+++
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 344567899999999999888877752 23344 99999999999999999999863 23566666
Q ss_pred chhHHHhhccchHHHHHHHHHHHh------cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcE
Q 007591 399 SEFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (597)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~A~~------~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~V 472 (597)
++. .+...+++.+..... ..+.|++|||+|.+... ..+.|+..|+... ...
T Consensus 85 ~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~---------------~~~~L~~~le~~~--~~~ 141 (340)
T 1sxj_C 85 SDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA---------------AQNALRRVIERYT--KNT 141 (340)
T ss_dssp TSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH---------------HHHHHHHHHHHTT--TTE
T ss_pred ccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH---------------HHHHHHHHHhcCC--CCe
Confidence 542 122344544443331 23679999999988532 2355666666443 345
Q ss_pred EEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 007591 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (597)
Q Consensus 473 IVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAa 552 (597)
.+|.+||.+..+.+++.+ |+. .+.+.+++.++..+++...+...++.+.++ .+..++..+.| ..+.+.++++.++
T Consensus 142 ~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~~~~ 216 (340)
T 1sxj_C 142 RFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQSCK 216 (340)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTTTTT
T ss_pred EEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 667788999999999998 765 789999999999999999887766766655 36778887765 5666666665554
Q ss_pred HHHHhcCCccccHHHHHHHH
Q 007591 553 LLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 553 l~A~r~~~~~It~~d~~~Al 572 (597)
..+...+...|+.+++.+++
T Consensus 217 ~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 217 ATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTCSSSCCCBCHHHHHHHT
T ss_pred HhcCCcccccccHHHHHHHh
Confidence 33322223468877765543
No 74
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.9e-15 Score=157.21 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=135.4
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC--------------
Q 007591 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (597)
Q Consensus 326 ~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~-------------- 391 (597)
..+.+|++++|++++++.|+..+. . ..+.|. ++|+||+|+|||++++++++++..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 356789999999998887776541 1 123455 999999999999999999996411
Q ss_pred ---------------CeEEeecchhHHHhhccchHHHHHHHHHHH--------------hcCCeEEEEcCcchhhhhcCC
Q 007591 392 ---------------PFISCSASEFVELYVGMGASRVRDLFARAK--------------KEAPSIIFIDEIDAVAKSRDG 442 (597)
Q Consensus 392 ---------------pfi~is~se~~~~~vG~~~~~vr~lF~~A~--------------~~~P~ILfIDEIDaL~~~r~~ 442 (597)
+++.+++++.. ......+++.++.+. ...|.||+|||+|.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~---- 148 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK---- 148 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH----
Confidence 12333332210 001113555555543 22577999999998642
Q ss_pred ccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC
Q 007591 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELP 522 (597)
Q Consensus 443 ~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~ 522 (597)
...+.|+..|+... .+..+|.+|+.++.+.+++.+ |+ ..+.+++|+.++..++++..+.+.++.
T Consensus 149 -----------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 -----------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -----------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred -----------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 22355666665443 356777888889999999998 76 689999999999999999999877777
Q ss_pred CC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 523 LA-KDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 523 l~-~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
+. ++ .++.|+..+.| +.+++.++++.++..+
T Consensus 213 ~~~~~-~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 213 LETKD-ILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp ECCSH-HHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCcHH-HHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 66 54 48889988876 7888888888776544
No 75
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.62 E-value=5.5e-16 Score=160.45 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=132.4
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh---
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY--- 405 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~--- 405 (597)
++++|.+++...+.+.+..+. ..+.+|||+||||||||++|++++..+ +.||+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 368999999888888776542 235679999999999999999999965 6899999998764321
Q ss_pred --hccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC---------
Q 007591 406 --VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------- 467 (597)
Q Consensus 406 --vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------- 467 (597)
.|... ......|..+. .++|||||||.+... ....|+..|+...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~---------------~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL---------------MQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH---------------HHHHHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH---------------HHHHHHHHHhcCEeeecCCccc
Confidence 12100 01234455554 359999999998632 2244555554321
Q ss_pred CCCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHH----HHHHHHHHhc----CC---CCCCCCCCH
Q 007591 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVSK----KE---LPLAKDIDL 529 (597)
Q Consensus 468 ~~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR----~~ILk~~l~~----~~---l~l~~dvdl 529 (597)
....+.||+|||.+ ..++++|.. ||. .+.+..|+..+| ..+++.++.+ .+ ..+.++ .+
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~-a~ 209 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQ-AM 209 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHH-HH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHH-HH
Confidence 12458899999975 235566666 665 556666665554 3455555432 22 223333 26
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 007591 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (597)
Q Consensus 530 ~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~ 570 (597)
+.|.......+.++|.+++..|+..+. ...|+.+|+..
T Consensus 210 ~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l~~ 247 (304)
T 1ojl_A 210 DLLIHYDWPGNIRELENAIERAVVLLT---GEYISERELPL 247 (304)
T ss_dssp HHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGSCG
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhhhh
Confidence 667777755588999999999887652 34677666643
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=1.1e-14 Score=153.64 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=158.7
Q ss_pred CcccccCChHHHHHHHHHH-HHhcChhHHhhhCCCCCCeeEE--ecCCCChHHHHHHHHHHhc---------CCCeEEee
Q 007591 330 TFADVAGVDEAKEELEEIV-EFLRSPDKYIRLGARPPRGVLL--VGLPGTGKTLLAKAVAGEA---------EVPFISCS 397 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv-~~l~~p~~~~~lg~~~p~gVLL--~GPPGTGKT~LAkAIA~el---------g~pfi~is 397 (597)
..++++|.++..+.|.+.+ ...... ....+..++| +||||+|||+|++++++++ +.++++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3478999999988888877 543210 0024567999 9999999999999999876 56778888
Q ss_pred cch------hHHHh---h-------ccchHH-HHHHHHHHH-hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHH
Q 007591 398 ASE------FVELY---V-------GMGASR-VRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (597)
Q Consensus 398 ~se------~~~~~---v-------G~~~~~-vr~lF~~A~-~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~L 459 (597)
|.. +.... . +..... ...+..... ...|.||+|||+|.+...... . ...+..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~----~~~l~~l 164 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----A----AEDLYTL 164 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----C----HHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----c----hHHHHHH
Confidence 642 11111 1 111122 222222222 356889999999998643110 0 2344444
Q ss_pred HHhhcCCCC-C--CcEEEEeecCCCC---CCC---hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC--CCCCCCC
Q 007591 460 LTEMDGFDS-N--SAVIVLGATNRSD---VLD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL--PLAKDID 528 (597)
Q Consensus 460 L~emd~~~~-~--~~VIVIaaTNrpd---~Ld---~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l--~l~~dvd 528 (597)
+..++.... . .++.+|++|+.++ .++ +.+.+ +|...+.+++++.++..++++.++...+. .+.++ .
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~-~ 241 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPR-H 241 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHH-H
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChH-H
Confidence 444443321 2 6788888887664 344 56666 56656999999999999999887653211 22222 3
Q ss_pred HHHHHHhCC------CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh-c-chhhhccCCCHHHHhH
Q 007591 529 LGDIASMTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI-A-GIEKKTAKLKGSEKAV 593 (597)
Q Consensus 529 l~~LA~~t~------G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi-~-g~~k~~~~ls~~ek~i 593 (597)
+..++..+. | .++.+.+++..|...|...+...++.+++..++.... . .+...-..+++.++.+
T Consensus 242 ~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~ 313 (412)
T 1w5s_A 242 LELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELII 313 (412)
T ss_dssp HHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHH
T ss_pred HHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHH
Confidence 677888887 6 7889999999999888888888899999998887654 2 2222223566766655
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=2.2e-16 Score=177.76 Aligned_cols=224 Identities=19% Similarity=0.160 Sum_probs=143.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe----ecchhHHH---
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC----SASEFVEL--- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i----s~se~~~~--- 404 (597)
..|+|++++|+.+...+..-. +........+...+|||+||||||||+||+++|+.++..++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~-~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV-PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC-CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCC-cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 458999998877643322110 0000001123344899999999999999999999987665542 22222111
Q ss_pred --hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC-----------CCCc
Q 007591 405 --YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSA 471 (597)
Q Consensus 405 --~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-----------~~~~ 471 (597)
+.|... .....+..|. .+||||||||.+... ..+.|+..|+... .+.+
T Consensus 374 ~~~~g~~~-~~~G~l~~A~---~gil~IDEid~l~~~---------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLAD---GGIAVIDEIDKMRDE---------------DRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp GGGTSSCS-EEECHHHHHS---SSEECCTTTTCCCSH---------------HHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred cccccccc-ccCCeeEecC---CCcEEeehhhhCCHh---------------HhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 111100 0012233342 359999999987532 2355666665321 1356
Q ss_pred EEEEeecCCCC-------------CCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhcCCC----------------
Q 007591 472 VIVLGATNRSD-------------VLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKEL---------------- 521 (597)
Q Consensus 472 VIVIaaTNrpd-------------~Ld~aLlRpgRFd~-~I~v~~Pd~~eR~~ILk~~l~~~~l---------------- 521 (597)
+.||||||++. .|+++|++ |||. .+..+.|+.+ ...|+++.+.....
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 88999999986 89999999 9985 4455667777 77787777653211
Q ss_pred ---------CCCCCCCHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 007591 522 ---------PLAKDIDLGDIASM--------------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 522 ---------~l~~dvdl~~LA~~--------------t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (597)
.+.++ ..+.|+.. ..+.|++.+.++++.|...|..+++..|+.+|+.+|+.-....
T Consensus 512 ~~ar~~~~p~ls~e-a~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 512 AYARKYVTPKITSE-AKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHHHHHCCCCCCC-THHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 12211 23444443 3577999999999999999999999999999999999765444
Q ss_pred h
Q 007591 579 I 579 (597)
Q Consensus 579 ~ 579 (597)
+
T Consensus 591 l 591 (595)
T 3f9v_A 591 L 591 (595)
T ss_dssp H
T ss_pred H
Confidence 3
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=1.5e-15 Score=177.33 Aligned_cols=203 Identities=24% Similarity=0.312 Sum_probs=142.9
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH---
Q 007591 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~--- 404 (597)
+++|+|++++++.|...+...+.... ...++..++||+||||||||++|+++|..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 35789999999999888875431100 001233479999999999999999999988 789999999877543
Q ss_pred ---------hhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------
Q 007591 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------- 467 (597)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~-------- 467 (597)
|+|... ...+....+...++||||||||.+. ..+++.|+..|+...
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~---------------~~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH---------------PDVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC---------------HHHHHHHHHHHTTTEECCSSSCC
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC---------------HHHHHHHHHHhccCceECCCCCE
Confidence 122211 2334444455567899999999764 245677888887431
Q ss_pred -CCCcEEEEeecCCC--------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-
Q 007591 468 -SNSAVIVLGATNRS--------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK- 519 (597)
Q Consensus 468 -~~~~VIVIaaTNrp--------------------------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~- 519 (597)
.-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.+++..|++.++.+.
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 11368899999972 245677777 999999999999999999998887631
Q ss_pred --------CCCCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHHHHH
Q 007591 520 --------ELPLAKDIDLGDIASMTT--GFTGADLANLVNEAALLAG 556 (597)
Q Consensus 520 --------~l~l~~dvdl~~LA~~t~--G~SgaDL~~Lv~eAal~A~ 556 (597)
.+.+.++ .++.|+.... .++.++|.++++.+...+.
T Consensus 775 ~~~~~~~~~~~~~~~-a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 775 ARLAEKRISLELTEA-AKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHHTTTCEEEECHH-HHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHhCCceEEECHH-HHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 1223333 3677887766 5688999999999876654
No 79
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.47 E-value=7.3e-14 Score=157.32 Aligned_cols=218 Identities=27% Similarity=0.353 Sum_probs=136.1
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC---eEEeecchh
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 401 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p---fi~is~se~ 401 (597)
..++..|++++|++.+++.+...+.. ...++|+||||||||+||+++|+.+... .+.+.+...
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 34567899999999998887776642 2479999999999999999999987422 111211100
Q ss_pred ------------------HHHh--------------------------------------hccchHHHHHHHHH------
Q 007591 402 ------------------VELY--------------------------------------VGMGASRVRDLFAR------ 419 (597)
Q Consensus 402 ------------------~~~~--------------------------------------vG~~~~~vr~lF~~------ 419 (597)
.+.. +.........+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 0000 00000001112210
Q ss_pred -----------------HHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCC----------------
Q 007591 420 -----------------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------------- 466 (597)
Q Consensus 420 -----------------A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~---------------- 466 (597)
.....+++|||||+|.+... ..+.|+..|+..
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~---------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l 244 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLK---------------MQQSLLTAMQEKKFPITGQSEMSSGAMV 244 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHH---------------HHHHHHHHHHHSEECCBCSCTTSGGGGC
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCCHH---------------HHHHHHHHHHcCcEEecccccccccccC
Confidence 11124569999999987432 224444444411
Q ss_pred ---CCCCcEEEEeecCCC--CCCChhhhCCCCcc---eEEEecC--C-CHHHHHHHHHHHHhcC-----CCCCCCCCCHH
Q 007591 467 ---DSNSAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--P-DKIGREAILKVHVSKK-----ELPLAKDIDLG 530 (597)
Q Consensus 467 ---~~~~~VIVIaaTNrp--d~Ld~aLlRpgRFd---~~I~v~~--P-d~~eR~~ILk~~l~~~-----~l~l~~dvdl~ 530 (597)
.-...+.||++||+. +.++++|++ ||+ ..+.++. + +.+....+++...... ...+.++ .+.
T Consensus 245 ~~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~e-Al~ 321 (604)
T 3k1j_A 245 RTEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKE-AVE 321 (604)
T ss_dssp BCSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHH-HHH
T ss_pred CCCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHH-HHH
Confidence 112467899999987 689999999 886 4555543 2 3444555655444321 1233333 245
Q ss_pred HHHHhC---CC------CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 007591 531 DIASMT---TG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (597)
Q Consensus 531 ~LA~~t---~G------~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~r 574 (597)
.|.+.. .| .+.+++.++++.|...|..++...|+.+|+.+|+.+
T Consensus 322 ~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 322 EIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 555432 44 268999999999999998889999999999999965
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.47 E-value=4.2e-14 Score=130.15 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=80.2
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhccc
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~~ 409 (597)
+++|.++..+.+.+.+..+. ..+.+|||+||||||||++|++++..+ +.||+ ++|..+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 68899998888888776542 234579999999999999999999986 78999 999876543
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 410 ~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
......|..+.. ++|||||||.+.... ...|+..|... ...+.+|++||.+
T Consensus 66 -~~~~~~~~~a~~---g~l~ldei~~l~~~~---------------q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQG---GTLVLSHPEHLTREQ---------------QYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHTT---SCEEEECGGGSCHHH---------------HHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred -hhhhcHHHHcCC---cEEEEcChHHCCHHH---------------HHHHHHHHhhc--CCCEEEEEECCcC
Confidence 234556666644 599999999986432 23455555332 3356788888875
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.47 E-value=1.3e-12 Score=136.49 Aligned_cols=174 Identities=17% Similarity=0.251 Sum_probs=121.4
Q ss_pred ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCC------------------------
Q 007591 337 VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------ 392 (597)
Q Consensus 337 ~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~p------------------------ 392 (597)
++++.+.|...+. ..+.++.+||+||||+|||++|+++|+.+..+
T Consensus 7 ~~~~~~~l~~~i~-----------~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQ-----------AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHH-----------TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHH-----------cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4555555555443 23567789999999999999999999987532
Q ss_pred eEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC
Q 007591 393 FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (597)
Q Consensus 393 fi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~ 468 (597)
++.+++.+- ....+...++++++.+.. ..+.|++|||+|.+.. ...|.|+..|+. +
T Consensus 76 ~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~---------------~a~naLLk~lEe--p 135 (334)
T 1a5t_A 76 YYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD---------------AAANALLKTLEE--P 135 (334)
T ss_dssp EEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH---------------HHHHHHHHHHTS--C
T ss_pred EEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH---------------HHHHHHHHHhcC--C
Confidence 233322100 011234567888877653 3467999999999853 235788888884 3
Q ss_pred CCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Q 007591 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (597)
Q Consensus 469 ~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv 548 (597)
..++++|.+||.++.+.+.+++ |.. .+.+++|+.++..++++..+ .+.++ .++.+++.+.| +.+.+.+++
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~-~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV-----TMSQD-ALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC-----CCCHH-HHHHHHHHTTT-CHHHHHHTT
T ss_pred CCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc-----CCCHH-HHHHHHHHcCC-CHHHHHHHh
Confidence 4567888888889999999998 653 79999999999999998765 23332 46778888876 666666655
Q ss_pred HHH
Q 007591 549 NEA 551 (597)
Q Consensus 549 ~eA 551 (597)
+.+
T Consensus 206 ~~~ 208 (334)
T 1a5t_A 206 QGD 208 (334)
T ss_dssp SSH
T ss_pred ccc
Confidence 543
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.44 E-value=3.5e-14 Score=130.54 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=79.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHH
Q 007591 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR 412 (597)
Q Consensus 333 dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~ 412 (597)
+++|.+++.+.+.+.+..+. ..+.+|||+||||||||++|++++.++. +|+.++|.++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 58899999988888876532 2345799999999999999999999988 99999999876543
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 413 VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 413 vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
...+|..+. +++|||||+|.+....+ ..|+..|+... ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~~q---------------~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRNIQ---------------TGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHHHH---------------HHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHHHH---------------HHHHHHHHhCC-CCCEEEEEecCCC
Confidence 455666654 45999999999864322 22333333222 3457788888765
No 83
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.43 E-value=5.1e-14 Score=172.71 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=109.0
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcC----------hhHHhh------hCC----------CCCCe--eEEecCCC
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEF-LRS----------PDKYIR------LGA----------RPPRG--VLLVGLPG 375 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~-l~~----------p~~~~~------lg~----------~~p~g--VLL~GPPG 375 (597)
..+.++|+||.|.+++|+.+.+.+.+ +.. ++.|.. .|. -+|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 45669999999999999999998887 422 445554 222 25556 99999999
Q ss_pred ChHHHHHHHHHHhc---CCCeEEeecchhH------------HHhhcc----chHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007591 376 TGKTLLAKAVAGEA---EVPFISCSASEFV------------ELYVGM----GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (597)
Q Consensus 376 TGKT~LAkAIA~el---g~pfi~is~se~~------------~~~vG~----~~~~vr~lF~~A~~~~P~ILfIDEIDaL 436 (597)
||||+||++++.+. +-|.+.++..+.. +.++++ +++.++.+|..|+..+||+||+||+|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999876 5565566555433 455666 7899999999999999999999999999
Q ss_pred hhhcCCc--cccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 437 AKSRDGR--FRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 437 ~~~r~~~--~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
.+.+... ..........+.++++|.+|++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 9885311 01011245577899999999987777778888 67764
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=9.3e-12 Score=129.11 Aligned_cols=142 Identities=14% Similarity=0.188 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc------CCCeEEeecchhHHHhhccc
Q 007591 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------EVPFISCSASEFVELYVGMG 409 (597)
Q Consensus 336 G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el------g~pfi~is~se~~~~~vG~~ 409 (597)
|++++.+.|+..+..- + +..+|||||||+|||++|+++|+.+ +..++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 6777777777776521 2 4579999999999999999999863 45677777542 1234
Q ss_pred hHHHHHHHHHHHhc----CCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC
Q 007591 410 ASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 410 ~~~vr~lF~~A~~~----~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld 485 (597)
...++++++.+... ...|++|||+|.+.. ...|.|+..|+.. ...+++|.+|+.++.+.
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~---------------~a~naLLk~LEep--~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ---------------QAANAFLKALEEP--PEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH---------------HHHHHTHHHHHSC--CTTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH---------------HHHHHHHHHHhCC--CCCeEEEEEECChHhCh
Confidence 55688888888643 246999999999853 2347889988853 34566777778888999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHH
Q 007591 486 PALRRPGRFDRVVMVETPDKIGREAILKVHV 516 (597)
Q Consensus 486 ~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l 516 (597)
+++++ | ++.+++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 78999999999999998876
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.30 E-value=8.2e-12 Score=103.73 Aligned_cols=75 Identities=33% Similarity=0.512 Sum_probs=70.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 007591 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (597)
Q Consensus 501 ~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~ 577 (597)
|+||.++|.+||+.++++ +++.++++++.||..|+||||+||.++|++|++.|.+++...|+++||..|+++++.
T Consensus 1 plPd~~~R~~Il~~~l~~--~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK--MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT--SEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcC--CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999975 466788999999999999999999999999999999999999999999999999864
No 86
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.30 E-value=7.6e-12 Score=106.70 Aligned_cols=79 Identities=29% Similarity=0.491 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhc
Q 007591 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKT 583 (597)
Q Consensus 504 d~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~~k~~ 583 (597)
|.++|.+||+.|+++ +++.+++|++.||..|+||||+||.++|++|++.|.+++...|+++||..|++++..+.++++
T Consensus 2 d~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTT--SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCC--CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 668999999999975 577789999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q 007591 584 A 584 (597)
Q Consensus 584 ~ 584 (597)
.
T Consensus 80 ~ 80 (88)
T 3vlf_B 80 S 80 (88)
T ss_dssp -
T ss_pred c
Confidence 4
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.29 E-value=7.2e-12 Score=106.54 Aligned_cols=77 Identities=32% Similarity=0.487 Sum_probs=71.0
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 007591 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (597)
Q Consensus 500 v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g 578 (597)
-.+||.++|.+||+.++++ +++.+++|++.||+.|+||||+||.++|++|++.|.++....|+++||..|++++.++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~--~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRK--MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTT--SEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 3589999999999999975 4667899999999999999999999999999999999999999999999999998754
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.27 E-value=7.3e-12 Score=133.75 Aligned_cols=207 Identities=20% Similarity=0.273 Sum_probs=129.0
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh--
Q 007591 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY-- 405 (597)
Q Consensus 331 f~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~-- 405 (597)
+.+++|..+..+.+.+.+..+.. ....|||+|++||||+++|++++... +.||+.++|..+.+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISC----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTT----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcC----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 34678888777777776665432 23468999999999999999998865 4799999998764421
Q ss_pred ---hccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC-----CCC--
Q 007591 406 ---VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS-- 468 (597)
Q Consensus 406 ---vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~-----~~~-- 468 (597)
.|... .....+|+.|..+ +||||||+.+....+ ..|+..|+. ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l~~~~q---------------~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGG---TLFLDEIGELSLEAQ---------------AKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTS---EEEEESGGGCCHHHH---------------HHHHHHHHHSEECCBTCCS
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCc---EEEEcChhhCCHHHH---------------HHHHHHHhcCcEEeCCCCc
Confidence 12110 0123456666544 999999999864332 334443331 111
Q ss_pred --CCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHh----cCCCC---CCCCCC
Q 007591 469 --NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVS----KKELP---LAKDID 528 (597)
Q Consensus 469 --~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR~----~ILk~~l~----~~~l~---l~~dvd 528 (597)
...+.||+|||.. ..+.+.|.- |+. .+.+..|+..+|. .++.+++. +.+.+ +.++ .
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a 343 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKS-A 343 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHH-H
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHH-H
Confidence 2367899999974 122333322 332 4567777777764 23444433 23322 2222 2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 007591 529 LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (597)
Q Consensus 529 l~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al 572 (597)
++.|..+.+-.+.++|++++.+|+..+ ....|+.+|+...+
T Consensus 344 ~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 344 QELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 555666665557789999999998876 34589999987554
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=8.6e-11 Score=149.89 Aligned_cols=172 Identities=19% Similarity=0.282 Sum_probs=112.8
Q ss_pred CCeeEEecCCCChHHHHHHH-HHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHH---------------hcCCeEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKA-VAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK---------------KEAPSII 428 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkA-IA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~---------------~~~P~IL 428 (597)
.+++||+||||||||++|+. ++...+.+++.++++... +...+...++... .+.++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 46899999999999999955 555557788888876542 2334555555431 1235799
Q ss_pred EEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC-C-------CcEEEEeecCCCC-----CCChhhhCCCCcc
Q 007591 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-N-------SAVIVLGATNRSD-----VLDPALRRPGRFD 495 (597)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~-~-------~~VIVIaaTNrpd-----~Ld~aLlRpgRFd 495 (597)
||||||.....+. +....-..+.+++. ..++.. . .++.+|||+|++. .|+++++| ||
T Consensus 1341 FiDEinmp~~d~y------g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1341 FCDEINLPKLDKY------GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEETTTCSCCCSS------SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred Eeccccccccccc------CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 9999987443321 12233445566553 223211 1 2589999999994 89999999 89
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCC--HHHHH-----------H-------hCCCCCHHHHHHHHHHHHH
Q 007591 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDID--LGDIA-----------S-------MTTGFTGADLANLVNEAAL 553 (597)
Q Consensus 496 ~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvd--l~~LA-----------~-------~t~G~SgaDL~~Lv~eAal 553 (597)
.++.++.|+.+++..|+..++... +...+++. .+.|+ . ...-|+.+||.++++-...
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~-l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI-FKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH-TTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 689999999999999999988642 22222221 11111 1 1235789999988876443
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=4.3e-11 Score=113.00 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=79.7
Q ss_pred CCcCcccccCC-hHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchh
Q 007591 327 DTITFADVAGV-DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (597)
Q Consensus 327 ~~vtf~dV~G~-de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~ 401 (597)
.+.+|+++++. ++.++.+..+.+++.+- ....+.+++|+||||||||+|++++++.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45688888874 34444554444444331 22346789999999999999999999876 777888888877
Q ss_pred HHHhhccchH-HHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 402 VELYVGMGAS-RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 402 ~~~~vG~~~~-~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
...+...... ....++... ..|.+|+|||++... .+......+.+++.... ..+..+|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~----------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER----------LSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC----------CCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc----------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 6654321110 001222222 257799999998542 12223345555555442 123455667776
Q ss_pred C
Q 007591 481 S 481 (597)
Q Consensus 481 p 481 (597)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 5
No 91
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.09 E-value=2.5e-10 Score=95.74 Aligned_cols=75 Identities=29% Similarity=0.426 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchh
Q 007591 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 504 d~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~~ 580 (597)
|.++|.+||+.|+++ +++.++++++.||..|+||||+||.++|++|++.|.+++...|+++||..|++++.++..
T Consensus 2 d~~~R~~Il~~~l~~--~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSK--MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTT--SCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 678999999999975 466788999999999999999999999999999999999999999999999999977654
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.07 E-value=1.5e-10 Score=110.94 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCcCcccccCChH-HHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH
Q 007591 327 DTITFADVAGVDE-AKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (597)
Q Consensus 327 ~~vtf~dV~G~de-~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~ 402 (597)
...+|+++++.+. .++.++.+..++.... ....+.+++|+||||||||+||++++.++ +.+++.++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3568999988763 3334444444433210 01134789999999999999999999977 7889999998876
Q ss_pred HHhhccc-hHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 403 ELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 403 ~~~vG~~-~~~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
....... ...+..++..... +.+|+|||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 6543211 1112233333332 3599999997654
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.04 E-value=9.2e-10 Score=119.98 Aligned_cols=215 Identities=19% Similarity=0.109 Sum_probs=127.3
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHH-HHhcCCCeEE-eecchhHHHhhcc---
Q 007591 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV-AGEAEVPFIS-CSASEFVELYVGM--- 408 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAI-A~elg~pfi~-is~se~~~~~vG~--- 408 (597)
|.|++++|..|.-.+-.-... .+..-+|||.|+||| ||++|+++ ++-+..-.+. ..++..... .+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gL-t~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDL-TAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHH-SEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCc-eEEEEc
Confidence 889999887776655321100 122337999999999 99999999 7655332222 111111010 000
Q ss_pred --chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC-------CCCCCcEEEEeecC
Q 007591 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-------FDSNSAVIVLGATN 479 (597)
Q Consensus 409 --~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~-------~~~~~~VIVIaaTN 479 (597)
+...-...+..|..+ |+|||||+.+.. .+...|+..|+. ..-+..+.||||+|
T Consensus 286 ~tG~~~~~G~l~LAdgG---vl~lDEIn~~~~---------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 286 DRGWALRAGAAVLADGG---ILAVDHLEGAPE---------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp SSSEEEEECHHHHTTTS---EEEEECCTTCCH---------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred CCCcccCCCeeEEcCCC---eeehHhhhhCCH---------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 000001223344444 999999998753 233555555552 11245789999999
Q ss_pred CCC-----------CCChhhhCCCCcceEEE-ecCCCHHH-------------HHHHHHHHHh--cCCCCCCCCCCHHHH
Q 007591 480 RSD-----------VLDPALRRPGRFDRVVM-VETPDKIG-------------REAILKVHVS--KKELPLAKDIDLGDI 532 (597)
Q Consensus 480 rpd-----------~Ld~aLlRpgRFd~~I~-v~~Pd~~e-------------R~~ILk~~l~--~~~l~l~~dvdl~~L 532 (597)
..+ .|++++++ |||..+. ++.|+.++ .++++. +++ .....+.+++ .+.|
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea-~~yI 423 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEA-RKRL 423 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHH-HHHH
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHH-HHHH
Confidence 865 78899999 9997554 34554332 222222 222 1122233321 1122
Q ss_pred H------H-----------hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch
Q 007591 533 A------S-----------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI 579 (597)
Q Consensus 533 A------~-----------~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~ 579 (597)
. + ...|.|++.+..+++-|...|..+++..|+.+|+.+|+.-....+
T Consensus 424 ~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 424 EHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 1 0 245789999999999999999999999999999999997665444
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.04 E-value=1.4e-08 Score=104.09 Aligned_cols=187 Identities=17% Similarity=0.179 Sum_probs=114.7
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh------
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF------ 401 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~------ 401 (597)
....+.++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++++..++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 3455678999887666665 32 1 369999999999999999999988777777776542
Q ss_pred -----HHHhh---------------------c-------c-------chHHHHHHHHHHHhc--CCeEEEEcCcchhhhh
Q 007591 402 -----VELYV---------------------G-------M-------GASRVRDLFARAKKE--APSIIFIDEIDAVAKS 439 (597)
Q Consensus 402 -----~~~~v---------------------G-------~-------~~~~vr~lF~~A~~~--~P~ILfIDEIDaL~~~ 439 (597)
..... + . ....+..++...... .|.+|+|||+|.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 10000 0 0 012244455544432 3899999999998642
Q ss_pred cCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC---------hhhhCCCCcceEEEecCCCHHHHHH
Q 007591 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD---------PALRRPGRFDRVVMVETPDKIGREA 510 (597)
Q Consensus 440 r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld---------~aLlRpgRFd~~I~v~~Pd~~eR~~ 510 (597)
... .....+..+... . .++.+|.++.....+. ..+ .||+...+.+++.+.++..+
T Consensus 153 ~~~--------~~~~~l~~~~~~---~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 153 RGV--------NLLPALAYAYDN---L---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp TTC--------CCHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHH
T ss_pred Cch--------hHHHHHHHHHHc---C---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHH
Confidence 111 112233333332 1 2455555554322111 112 24666789999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 007591 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (597)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~e 550 (597)
+++..+...+.... +...+...|.| .+.-+..++..
T Consensus 217 ~l~~~~~~~~~~~~---~~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 217 FLRRGFQEADIDFK---DYEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHTCCCC---CHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC---cHHHHHHHhCC-CHHHHHHHHHH
Confidence 99987754333332 24788888987 56666665543
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.03 E-value=2e-08 Score=102.83 Aligned_cols=191 Identities=19% Similarity=0.197 Sum_probs=114.2
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH-----
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV----- 402 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~----- 402 (597)
...-+.++|.++..+.|.+.+.. + ..++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 34456789999988888877642 1 4799999999999999999999886 6666654321
Q ss_pred -------HHhh--------------------ccc----hHHHHHHHHH----HHhcCCeEEEEcCcchhhhhcCCccccc
Q 007591 403 -------ELYV--------------------GMG----ASRVRDLFAR----AKKEAPSIIFIDEIDAVAKSRDGRFRIV 447 (597)
Q Consensus 403 -------~~~v--------------------G~~----~~~vr~lF~~----A~~~~P~ILfIDEIDaL~~~r~~~~~~~ 447 (597)
..+. +.. ...+.+++.. +....|.+|+|||+|.+..... .
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-----~ 146 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-----R 146 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----T
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----c
Confidence 1110 000 0122333322 2222489999999999864100 0
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCC---------ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 007591 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL---------DPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 448 ~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~L---------d~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~ 518 (597)
........+..+. +.. .++.+|.++.....+ ...+ .||+...+.+.+.+.++..++++..+..
T Consensus 147 ~~~~~~~~L~~~~---~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 147 GGKELLALFAYAY---DSL---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp TTHHHHHHHHHHH---HHC---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHH---Hhc---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 1112222333333 322 245555554432111 1122 2466678999999999999999988766
Q ss_pred CCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 007591 519 KELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (597)
Q Consensus 519 ~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~ 549 (597)
.+..+.++ .+..+...|.| .+.-+..++.
T Consensus 219 ~~~~~~~~-~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 219 VNLDVPEN-EIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp TTCCCCHH-HHHHHHHHHTT-CHHHHHHHHH
T ss_pred cCCCCCHH-HHHHHHHHhCC-CHHHHHHHHH
Confidence 55554443 46778888887 4555655544
No 96
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.00 E-value=8.8e-10 Score=116.98 Aligned_cols=192 Identities=18% Similarity=0.287 Sum_probs=116.4
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC--CeEEeecchhHHH-----
Q 007591 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEFVEL----- 404 (597)
Q Consensus 332 ~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~--pfi~is~se~~~~----- 404 (597)
.+++|......++.+.+..+.. ....+|++|++||||+++|++++...+. +|+.++|..+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 3578888888877777765432 2235999999999999999999887643 3999999865322
Q ss_pred hhccch-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcC-----CCC----
Q 007591 405 YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS---- 468 (597)
Q Consensus 405 ~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~-----~~~---- 468 (597)
..|... ..-...|+.|..+ +||||||+.|....+ ..|+..|+. ...
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGELDQRVQ---------------AKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGSCHHHH---------------HHHHHHHHHSEECCBTCCCBE
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhCCHHHH---------------HHHHHHHHhCCcccCCCCcce
Confidence 112110 0112356666544 899999999864432 334444431 111
Q ss_pred CCcEEEEeecCCC-------CCCChhhhCCCCcceEEEecCCCHHHH----HHHHHHHHhc----CCC---CCCCCCCHH
Q 007591 469 NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGR----EAILKVHVSK----KEL---PLAKDIDLG 530 (597)
Q Consensus 469 ~~~VIVIaaTNrp-------d~Ld~aLlRpgRFd~~I~v~~Pd~~eR----~~ILk~~l~~----~~l---~l~~dvdl~ 530 (597)
...+.+|+|||.. ..+.+.|.. |+. .+.+..|...+| ..++.+++.+ .+. .+.++ .++
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 336 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYY--RLS-VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE-TKE 336 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH-HHH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHH--HhC-CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHH
Confidence 1257789999864 122223332 332 455666666665 3444544432 222 23333 256
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH
Q 007591 531 DIASMTTGFTGADLANLVNEAALLA 555 (597)
Q Consensus 531 ~LA~~t~G~SgaDL~~Lv~eAal~A 555 (597)
.|..+.+..+.++|.+++..|+..+
T Consensus 337 ~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 337 YLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 6666665557799999999988764
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.96 E-value=2.5e-10 Score=95.77 Aligned_cols=73 Identities=27% Similarity=0.349 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchh
Q 007591 506 IGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIE 580 (597)
Q Consensus 506 ~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rvi~g~~ 580 (597)
++|.+||+.|+++ +++.+++|++.||..|+||||+||.++|++|++.|.+++...|+++||..|+++++.+..
T Consensus 1 ~~R~~Il~~~l~~--~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp ---------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcC--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4789999999965 466788999999999999999999999999999999999999999999999998875543
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.82 E-value=3.2e-09 Score=109.97 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=63.1
Q ss_pred CcCcccccCCh-HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchhH
Q 007591 328 TITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFV 402 (597)
Q Consensus 328 ~vtf~dV~G~d-e~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~~ 402 (597)
..+|+++.+.+ .....+..+.+++... +...+.+++|+||||||||+||+++|.++ +.+++.+++++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 46899988755 3333344333443321 11135789999999999999999999855 4889999998887
Q ss_pred HHhhccc-hHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 403 ELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 403 ~~~vG~~-~~~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
..+.... ...+..++.... .+.+|||||++...
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 7554321 111222222222 24599999997653
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.82 E-value=1.1e-09 Score=101.66 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=46.6
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~ 437 (597)
....++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 45679999999999999999999977 777888888776432 112357799999998754
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.80 E-value=8.2e-10 Score=115.34 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=71.1
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~ 439 (597)
..+...++|+||||||||+||.++|.+.+ +.|+.+...+.++.+....+..+..+++...... +||||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 34445679999999999999999998654 4466663233333333333444555556555544 9999999998654
Q ss_pred cCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhh
Q 007591 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPAL 488 (597)
Q Consensus 440 r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aL 488 (597)
.......+ ...+.+.+++..|.++....++.+|+++| +...++++
T Consensus 198 ~~~~s~~G---~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNTTSG---GISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccc---hHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 32210001 11244555555555444445677888888 55666654
No 101
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.68 E-value=1.9e-08 Score=98.15 Aligned_cols=131 Identities=16% Similarity=0.179 Sum_probs=83.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh--------cC-CCeEEeecchhHHHhh----------ccchH--HHHHHHHHH--H
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE--------AE-VPFISCSASEFVELYV----------GMGAS--RVRDLFARA--K 421 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e--------lg-~pfi~is~se~~~~~v----------G~~~~--~vr~lF~~A--~ 421 (597)
+--.|++|+||||||++|.+.+.+ .| .+++.+++.++..... ..... ....+++.+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 446889999999999999886433 35 7777777665532111 11000 112333321 2
Q ss_pred hcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEec
Q 007591 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVE 501 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~ 501 (597)
....+||+|||++.+.+.+.... . + ..++..+.... ..++-||.+|+.++.|+.+++. |++..+++.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~----e-~-----~rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~ 151 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGS----K-I-----PENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIA 151 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTC----C-C-----CHHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEE
T ss_pred ccCceEEEEEChhhhccCccccc----h-h-----HHHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEc
Confidence 34467999999999975542211 0 0 23555555322 4456677788889999999987 999999998
Q ss_pred CCCHHHH
Q 007591 502 TPDKIGR 508 (597)
Q Consensus 502 ~Pd~~eR 508 (597)
.|....+
T Consensus 152 ~~~~~~~ 158 (199)
T 2r2a_A 152 SNKMGMR 158 (199)
T ss_dssp ECSSCCE
T ss_pred CcccCcc
Confidence 8655433
No 102
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.56 E-value=4.1e-07 Score=94.51 Aligned_cols=180 Identities=15% Similarity=0.078 Sum_probs=120.4
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CC-CeEEeecchhHHHhhccchHHHHHHHHHHHh----cCCeEEEEcCcc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EV-PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEID 434 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~-pfi~is~se~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID 434 (597)
+.+..+||+||+|+||+..+++++..+ +. ++..+... + ...++++++.+.. ....|++|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 345679999999999999999998865 22 32222111 1 1334556655542 346799999998
Q ss_pred h-hhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC-----CCCCChhhhCCCCcceEEEecCCCHHHH
Q 007591 435 A-VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR-----SDVLDPALRRPGRFDRVVMVETPDKIGR 508 (597)
Q Consensus 435 a-L~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr-----pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR 508 (597)
. +... ..+.|+..++..++ ..++|+++++. ...+.+++.+ |. .++.+.+++..+.
T Consensus 87 ~kl~~~---------------~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l 147 (343)
T 1jr3_D 87 NGPNAA---------------INEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQL 147 (343)
T ss_dssp SCCCTT---------------HHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHH
T ss_pred CCCChH---------------HHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHH
Confidence 8 6421 33667777774432 34444444432 2345567766 33 4889999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 007591 509 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (597)
Q Consensus 509 ~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~~~~~It~~d~~~Al~rv 575 (597)
...++..+.+.++.++++. ++.|+..+.| +.+++.+.++..+..+ +...||.+++.+.+...
T Consensus 148 ~~~l~~~~~~~g~~i~~~a-~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 148 PRWVAARAKQLNLELDDAA-NQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHTTCEECHHH-HHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 9999999988888777663 7788888866 6777777777666543 34579998887766543
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.53 E-value=2.4e-06 Score=109.65 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=109.4
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCcc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~ 444 (597)
..++++.||+|||||.+++++|+.+|.+++.++|++-. ....+..+|..+.... +.+++||++.+...--
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l------d~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL--- 714 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF------DYQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL--- 714 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC------CHHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH---
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC------ChhHhhHHHHHHHhcC-CEeeehhhhhcChHHH---
Confidence 35789999999999999999999999999999998643 3355667777766553 6999999998653211
Q ss_pred ccccchHHHHHHHHHHHhhcC-----------CCCCCcEEEEeecCC----CCCCChhhhCCCCcceEEEecCCCHHHHH
Q 007591 445 RIVSNDEREQTLNQLLTEMDG-----------FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGRE 509 (597)
Q Consensus 445 ~~~~~~e~e~~Ln~LL~emd~-----------~~~~~~VIVIaaTNr----pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~ 509 (597)
....+.+..+...+.. +.-+..+.|++|.|. ...|+++|++ || +.+.+..||.+...
T Consensus 715 -----s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 715 -----SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIA 786 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHH
Confidence 1111222222232211 112345667778883 4689999988 77 58999999998888
Q ss_pred HHHHHHHhcCCCCCCCCC-----CHHHH-HHhC-----CCCCHHHHHHHHHHHHHHH
Q 007591 510 AILKVHVSKKELPLAKDI-----DLGDI-ASMT-----TGFTGADLANLVNEAALLA 555 (597)
Q Consensus 510 ~ILk~~l~~~~l~l~~dv-----dl~~L-A~~t-----~G~SgaDL~~Lv~eAal~A 555 (597)
+|+-... |...++.. .+-.+ .+.. ..|.-+.+..++..|....
T Consensus 787 ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 787 EMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 8754322 12111110 01111 1122 2367788988888776543
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.51 E-value=4.7e-08 Score=104.23 Aligned_cols=120 Identities=18% Similarity=0.115 Sum_probs=77.4
Q ss_pred hCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhh-
Q 007591 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAK- 438 (597)
Q Consensus 360 lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~- 438 (597)
++.+++..++|+||||+|||+|++++++..+..++.+..++-. .. |........+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~----------~~--~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR----------LN--FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT----------HH--HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh----------HH--HHHHHhcchhHHHHHHHHHHHHH
Confidence 4677888999999999999999999999887766654433210 00 0111112345789999998875
Q ss_pred hcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecC
Q 007591 439 SRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (597)
Q Consensus 439 ~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~ 502 (597)
.+... .+ +.. .....+...+++ .+.|+++||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~--~~--~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SG--QGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CC--SHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--cc--Ccc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22110 00 110 123444555654 34567789999999 78999999987665533
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.49 E-value=1.2e-07 Score=118.09 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=79.9
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH----HHhhc------------cchHHHHHHHHHHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----ELYVG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~----~~~vG------------~~~~~vr~lF~~A~ 421 (597)
|..++++++|+||||||||+||.+++.++ |-.+..++..+.+ ....| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36788999999999999999999998775 4455555544321 12222 33456677777888
Q ss_pred hcCCeEEEEcCcchhhhhcCC--ccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeec
Q 007591 422 KEAPSIIFIDEIDAVAKSRDG--RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~~r~~--~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaT 478 (597)
..+|++|||||++.+.+.... ...........+.+.++|.+|.++....+++||++.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 899999999999988764311 100001111356778888888877767777777554
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.40 E-value=2.3e-06 Score=110.71 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=90.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc-CCCeEEeecchhHHHhhccchHHHHHHHHHH----H------------hcCCeE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELYVGMGASRVRDLFARA----K------------KEAPSI 427 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is~se~~~~~vG~~~~~vr~lF~~A----~------------~~~P~I 427 (597)
.++|||+||||||||++++.+...+ +.+++.++++.- ..+..+...++.. + .+..+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~------Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSA------TTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTT------CCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCC------CCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 3569999999999998876655544 667777777643 2334444444431 0 122369
Q ss_pred EEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCC-------CCcEEEEeecCCC-----CCCChhhhCCCCcc
Q 007591 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-------NSAVIVLGATNRS-----DVLDPALRRPGRFD 495 (597)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~-------~~~VIVIaaTNrp-----d~Ld~aLlRpgRFd 495 (597)
+||||++.-....- +....-..|.+++..-.-+.. -.++.+|||+|.| ..|+++++| ||.
T Consensus 1378 lFiDDiNmp~~D~y------GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKY------GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEETTTTCCCCCTT------SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEecccCCCCcccc------ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 99999985322211 122233455555543111111 2468899999987 479999999 897
Q ss_pred eEEEecCCCHHHHHHHHHHHHhc
Q 007591 496 RVVMVETPDKIGREAILKVHVSK 518 (597)
Q Consensus 496 ~~I~v~~Pd~~eR~~ILk~~l~~ 518 (597)
.+.++.|+.++...|+..++..
T Consensus 1450 -vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHHH
Confidence 6999999999999998776543
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.26 E-value=4.6e-07 Score=88.99 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=26.0
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pf 393 (597)
+..+++|||||||||||++|.++|+.+.-.+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3346799999999999999999999875443
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.01 E-value=2e-05 Score=74.94 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=24.1
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi 394 (597)
.+.|.||+|+|||||++.+++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998765543
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.96 E-value=3.5e-05 Score=73.91 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=28.1
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
..+...++|+||||+|||+|++.++..+ +.+++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4555678999999999999999999653 445555543
No 110
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.95 E-value=1.3e-05 Score=76.75 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=32.3
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
|..+..-++|+||||+|||+|++.++...+.++++++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4556667899999999999999999986677777776543
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.92 E-value=4e-05 Score=77.91 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=24.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCC
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~ 391 (597)
.++++|+||||||||++|+++|+....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457999999999999999999997644
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.88 E-value=5.5e-05 Score=98.12 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=88.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhhccchHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~ 445 (597)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-. ....+..+|.-+... .+-.++||++.+....-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLS--- 674 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLCQC-GAWGCFDEFNRLEERILS--- 674 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHH---
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHH---
Confidence 4578999999999999999999999999999998643 334555666666543 358899999987432110
Q ss_pred cccchHHHHHHHHHHHh-----hc-C--CCCCCcEEEEeecCC----CCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 007591 446 IVSNDEREQTLNQLLTE-----MD-G--FDSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (597)
Q Consensus 446 ~~~~~e~e~~Ln~LL~e-----md-~--~~~~~~VIVIaaTNr----pd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk 513 (597)
........+.+.+... ++ | +.-+..+.|++|.|. ...|+++|+. ||- .|.+..||.+...+|+-
T Consensus 675 -vv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 675 -AVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAMIKPDREMIAQVML 750 (3245)
T ss_dssp -HHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEECCSCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEEeCCCHHHHHHHHH
Confidence 0011111111111111 11 1 112345677778884 3689999998 774 69999999988777753
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.84 E-value=8.5e-05 Score=72.34 Aligned_cols=130 Identities=22% Similarity=0.210 Sum_probs=69.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHH--Hh--cCCCeEEeecchhHHH------hhcc----------------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVA--GE--AEVPFISCSASEFVEL------YVGM---------------------- 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA--~e--lg~pfi~is~se~~~~------~vG~---------------------- 408 (597)
|..+..-+.|.||+|+|||+|++.++ .. .+-..+.+...+.... ..|.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34556679999999999999999998 32 2444444443221110 0000
Q ss_pred --------------chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEE
Q 007591 409 --------------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (597)
Q Consensus 409 --------------~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIV 474 (597)
.......+........|.+|+|||+-++..... ......+.+..++..+.. .++.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~------d~~~~~~~l~~l~~~l~~----~g~ti 175 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE------EERKIREVLLKLNTILLE----MGVTT 175 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS------SGGGHHHHHHHHHHHHHH----HCCEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC------CHHHHHHHHHHHHHHHHH----CCCeE
Confidence 011122333344457899999999987764221 122334556666666642 23456
Q ss_pred EeecCCCCCCC-----hhhhCCCCc-ceEEEecC
Q 007591 475 LGATNRSDVLD-----PALRRPGRF-DRVVMVET 502 (597)
Q Consensus 475 IaaTNrpd~Ld-----~aLlRpgRF-d~~I~v~~ 502 (597)
|.+|+..+... ..+.. -. |+++.+..
T Consensus 176 i~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 176 ILTTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp EEEECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred EEEECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 66776654441 12222 34 66776653
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.83 E-value=3e-05 Score=75.38 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh--c-------CCCeEEeecchh------HHH--hhcc---------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE--A-------EVPFISCSASEF------VEL--YVGM--------------- 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e--l-------g~pfi~is~se~------~~~--~vG~--------------- 408 (597)
|..+..-++|+||||+|||+|++.++.. . +...++++..+. ... ..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4556667999999999999999999985 2 445677765541 110 0111
Q ss_pred chHH----HHHHHHHHHhcCCeEEEEcCcchhhh
Q 007591 409 GASR----VRDLFARAKKEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 409 ~~~~----vr~lF~~A~~~~P~ILfIDEIDaL~~ 438 (597)
.... +..+.+.+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 0111 22233444456799999999998764
No 115
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.77 E-value=0.0003 Score=77.84 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=95.0
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecch
Q 007591 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE 400 (597)
Q Consensus 330 tf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se 400 (597)
....++|.++..+.|.+.+... ...++-++|+||+|+|||+||+.++... ++-++.++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 4456899999888877766421 1224568999999999999999997532 23334443321
Q ss_pred ---hHHHh------hc----------cchHHHHHHHHHHHh--cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHH
Q 007591 401 ---FVELY------VG----------MGASRVRDLFARAKK--EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (597)
Q Consensus 401 ---~~~~~------vG----------~~~~~vr~lF~~A~~--~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~L 459 (597)
+...+ .+ .....+...+..... ..|++|+||+++... .
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~---------------------~ 250 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW---------------------V 250 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------------------H
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------------------H
Confidence 11111 11 011122222322222 268999999997421 1
Q ss_pred HHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEe---cCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 007591 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV---ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (597)
Q Consensus 460 L~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v---~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t 536 (597)
+.. +. .+..||.||........ . . ...+.+ +..+.++-.+++..++... .. ........|++.|
T Consensus 251 l~~---l~--~~~~ilvTsR~~~~~~~-~-~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~-~~~~~~~~i~~~~ 317 (591)
T 1z6t_A 251 LKA---FD--SQCQILLTTRDKSVTDS-V-M----GPKYVVPVESSLGKEKGLEILSLFVNMK-KA-DLPEQAHSIIKEC 317 (591)
T ss_dssp HHT---TC--SSCEEEEEESCGGGGTT-C-C----SCEEEEECCSSCCHHHHHHHHHHHHTSC-GG-GSCTHHHHHHHHH
T ss_pred HHH---hc--CCCeEEEECCCcHHHHh-c-C----CCceEeecCCCCCHHHHHHHHHHHhCCC-cc-cccHHHHHHHHHh
Confidence 122 22 23455556665432211 0 1 123444 4678899999998887531 11 1122467899999
Q ss_pred CCCCHHHHHH
Q 007591 537 TGFTGADLAN 546 (597)
Q Consensus 537 ~G~SgaDL~~ 546 (597)
.| .|-.|..
T Consensus 318 ~G-~PLal~~ 326 (591)
T 1z6t_A 318 KG-SPLVVSL 326 (591)
T ss_dssp TT-CHHHHHH
T ss_pred CC-CcHHHHH
Confidence 88 4544443
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.77 E-value=3.6e-05 Score=79.75 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=51.5
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecchh--HH----H--hhcc---------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF--VE----L--YVGM--------------- 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se~--~~----~--~vG~--------------- 408 (597)
|.++..-++|+||||+|||+||..+|..+ +.++++++...- .+ . -.|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45566679999999999999999998864 456777766542 11 0 0111
Q ss_pred chH----HHHHHHHHHHh-cCCeEEEEcCcchhhhh
Q 007591 409 GAS----RVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 409 ~~~----~vr~lF~~A~~-~~P~ILfIDEIDaL~~~ 439 (597)
... .+..+...++. ..+.+|+||.+..+...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 011 12233334444 67899999999998753
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.77 E-value=5.6e-05 Score=70.18 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=33.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+..|+|+|+||+||||+|++++.+++.+|+.++...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 456899999999999999999999999999877665544
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.75 E-value=4.3e-05 Score=81.06 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=50.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh----hcc-----------chHHHHHHHHHH-H
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----VGM-----------GASRVRDLFARA-K 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~----vG~-----------~~~~vr~lF~~A-~ 421 (597)
|.++...++|+||||+|||+||..+|.++ +.++++++...-.... .|. ....+...++.. +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 44556679999999999999999998754 5677777654322111 111 112222333322 3
Q ss_pred hcCCeEEEEcCcchhhh
Q 007591 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~ 438 (597)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46688999999999874
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.69 E-value=2.9e-05 Score=82.16 Aligned_cols=78 Identities=22% Similarity=0.214 Sum_probs=49.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH----hhc------------cchHHHHHHHHHHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVG------------MGASRVRDLFARAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~----~vG------------~~~~~vr~lF~~A~ 421 (597)
|..+..-++|+||||+|||+|+..++..+ +.++++++..+.... -.| ..+..+..+-...+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34455668999999999999999998864 567777776542211 011 01111222222223
Q ss_pred hcCCeEEEEcCcchhhh
Q 007591 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~ 438 (597)
...|.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46788999999998874
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.66 E-value=4e-05 Score=80.70 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=49.3
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH----hhcc-----------chHHHHHHHH-HHH
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGM-----------GASRVRDLFA-RAK 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~----~vG~-----------~~~~vr~lF~-~A~ 421 (597)
|..+..-++|+||||+|||+||..++.++ +.++++++...-... ..|. ....+..+.. .+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 44556679999999999999999998654 556666665432111 1121 1111222222 333
Q ss_pred hcCCeEEEEcCcchhhh
Q 007591 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~ 438 (597)
...|++|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999873
No 121
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.66 E-value=7e-05 Score=78.34 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=50.1
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecchh--HH----H--hhcc---------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF--VE----L--YVGM--------------- 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se~--~~----~--~vG~--------------- 408 (597)
|.++..-++|+||||+|||+||..+|..+ +.++++++.... .+ . ..|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 34555668999999999999999998863 456677765442 11 1 0111
Q ss_pred -ch---HHHHHHHHHHHh--cCCeEEEEcCcchhhhh
Q 007591 409 -GA---SRVRDLFARAKK--EAPSIIFIDEIDAVAKS 439 (597)
Q Consensus 409 -~~---~~vr~lF~~A~~--~~P~ILfIDEIDaL~~~ 439 (597)
.+ ..+..+...+.. ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 11 111222333444 67889999999998754
No 122
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.65 E-value=3.5e-05 Score=96.44 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=77.3
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHHh----hc--------cchHHHHHHHHHHHh---
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----VG--------MGASRVRDLFARAKK--- 422 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~~----vG--------~~~~~vr~lF~~A~~--- 422 (597)
|..++..++|+|+||+|||+||..+|.++ +.++++++..+..... .| ..+..+.+++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46778889999999999999999999866 4578998886554433 22 112234555555544
Q ss_pred -cCCeEEEEcCcchhhh-hcC-CccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 423 -EAPSIIFIDEIDAVAK-SRD-GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 423 -~~P~ILfIDEIDaL~~-~r~-~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
..|++||||.++.+.. ... ........+-..+.+++++..|..+....++.||++...
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999875 221 000000111223447777777776665666677766643
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=8.8e-05 Score=71.30 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=24.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
|..+..-+.|.||+|+|||+|++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555668999999999999999999854
No 124
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.60 E-value=0.0013 Score=78.08 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=99.4
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---C--CC----eEEeecc
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---E--VP----FISCSAS 399 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g--~p----fi~is~s 399 (597)
....+++|.++..++|.+.+... ...++-+.|+|+.|+|||+||+.++... . .+ ++.++..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34456999999888887776421 1234568899999999999999998752 1 12 3443331
Q ss_pred h---hHHH-------hh---------ccchHHHHHHHHHHHhcC--CeEEEEcCcchhhhhcCCccccccchHHHHHHHH
Q 007591 400 E---FVEL-------YV---------GMGASRVRDLFARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (597)
Q Consensus 400 e---~~~~-------~v---------G~~~~~vr~lF~~A~~~~--P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~ 458 (597)
. .... .. ......+...+....... +.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 1 1110 00 011223333344333333 7899999997531
Q ss_pred HHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecC-CCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 007591 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET-PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (597)
Q Consensus 459 LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~-Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~ 537 (597)
.++.+.+ +..||.||..+....... .....+.++. .+.++-.++|..++.... + ........|++.+.
T Consensus 250 ---~~~~~~~--~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~-~~~~~~~~i~~~~~ 318 (1249)
T 3sfz_A 250 ---VLKAFDN--QCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKK-E-DLPAEAHSIIKECK 318 (1249)
T ss_dssp ---HHTTTCS--SCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCS-T-TCCTHHHHHHHHTT
T ss_pred ---HHHhhcC--CCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCCh-h-hCcHHHHHHHHHhC
Confidence 1122222 335566776554432111 2234678875 888999999988774321 1 11223678999998
Q ss_pred CCCHHHHH
Q 007591 538 GFTGADLA 545 (597)
Q Consensus 538 G~SgaDL~ 545 (597)
|. |-.|.
T Consensus 319 gl-PLal~ 325 (1249)
T 3sfz_A 319 GS-PLVVS 325 (1249)
T ss_dssp TC-HHHHH
T ss_pred CC-HHHHH
Confidence 85 44443
No 125
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.56 E-value=0.00017 Score=78.10 Aligned_cols=53 Identities=25% Similarity=0.438 Sum_probs=37.0
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 325 ~~~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
...+.+|+++ .+++++.+..++.++... ...++|.||||||||+++.+++..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av~~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAFNIVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----CCSSCC--CHHHHHHHHHHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccC--CHHHHHHHHHHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3445777766 556667777776665442 1269999999999999999998765
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00033 Score=67.92 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~s 399 (597)
|..+..-++|+||||+|||+|+..++... +.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45566678999999999999998887643 5566666543
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.53 E-value=7.1e-05 Score=79.07 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=51.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH----hhcc-----------chHHHHHHHHHH-H
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGM-----------GASRVRDLFARA-K 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~----~vG~-----------~~~~vr~lF~~A-~ 421 (597)
|.++...++|+||||+|||+||..+|.++ +.++++++...-.+. ..|. ....+..++... +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 35566779999999999999999998754 667777776322111 1111 112233333322 3
Q ss_pred hcCCeEEEEcCcchhhh
Q 007591 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~ 438 (597)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46788999999999874
No 128
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.49 E-value=0.00066 Score=73.71 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCC--------CCCcEEEEeec----
Q 007591 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGAT---- 478 (597)
Q Consensus 411 ~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~--------~~~~VIVIaaT---- 478 (597)
...+..++.|..+ +|||+||||.++...++ .+.+-..+.+...||..|++-. ...+|++||+.
T Consensus 239 ~~~~~ai~~ae~~--~il~~DEidki~~~~~~---~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 239 ELKQKAIDAVEQN--GIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHH--CEEEEETGGGGSCCSSC---SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHhccC--CeeeHHHHHHHhhccCC---CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 3445666666333 39999999999865431 1233344557788899888632 24678899887
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH-----------HHhcCCC--CCCCCCCHHHHHH-------hCCC
Q 007591 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV-----------HVSKKEL--PLAKDIDLGDIAS-------MTTG 538 (597)
Q Consensus 479 Nrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~-----------~l~~~~l--~l~~dvdl~~LA~-------~t~G 538 (597)
+.+..+-|.|+. ||..+|.++.++.++..+|+.. .+...+. .+.++ .+..|++ .|..
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~-al~~i~~~a~~~~~~t~~ 390 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD-AVKKIAEAAFRVNEKTEN 390 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHHHHHSCC
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHH-HHHHHHHHHHHhccCCcc
Confidence 234445588887 9999999999999999999831 1111222 23333 2666665 3445
Q ss_pred CCHHHHHHHHHHHHHHHHhc------CCccccHHHHHHHHHH
Q 007591 539 FTGADLANLVNEAALLAGRL------NKVVVEKIDFIHAVER 574 (597)
Q Consensus 539 ~SgaDL~~Lv~eAal~A~r~------~~~~It~~d~~~Al~r 574 (597)
.-.+.|++++..++..+..+ ....|+.+++.+.+..
T Consensus 391 ~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 391 IGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp CGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCc
Confidence 45567666666555443322 2345888888776643
No 129
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.47 E-value=0.0014 Score=72.54 Aligned_cols=170 Identities=11% Similarity=0.110 Sum_probs=93.8
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHH----hcC-----CCeEEeecc---hhH
Q 007591 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG----EAE-----VPFISCSAS---EFV 402 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~----elg-----~pfi~is~s---e~~ 402 (597)
+|.++.+++|.+.+..- +....+.|.|+|+.|+|||+||+.+++ ... +-|+.++.. +..
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49998888887776421 112345688999999999999999996 232 223334332 111
Q ss_pred H-------Hhhcc------------chHHHHHHHHHHHhcC-CeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHh
Q 007591 403 E-------LYVGM------------GASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (597)
Q Consensus 403 ~-------~~vG~------------~~~~vr~lF~~A~~~~-P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~e 462 (597)
. ..... ....+...+....... +++|+||+++... +. .+..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~~~~- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--RWAQ- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--HHHH-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--cccc-
Confidence 1 11110 0112334444444554 8899999997632 11 1111
Q ss_pred hcCCCCCCcEEEEeecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC--CHHHHHHhCCCCC
Q 007591 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI--DLGDIASMTTGFT 540 (597)
Q Consensus 463 md~~~~~~~VIVIaaTNrpd~Ld~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dv--dl~~LA~~t~G~S 540 (597)
. .+..||.||....... . .+..+..+.++..+.++-.++|..++... +..++. ....|++.|.|.
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~~I~~~c~Gl- 329 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-A---ASQTCEFIEVTSLEIDECYDFLEAYGMPM--PVGEKEEDVLNKTIELSSGN- 329 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-G---CCSCEEEEECCCCCHHHHHHHHHHTSCCC--C--CHHHHHHHHHHHHHTTC-
T ss_pred c------CCCEEEEEcCCHHHHH-H---cCCCCeEEECCCCCHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhCCC-
Confidence 1 2335555776432211 1 11133578999999999999998875321 110110 145677788773
Q ss_pred HHHHH
Q 007591 541 GADLA 545 (597)
Q Consensus 541 gaDL~ 545 (597)
|-.|.
T Consensus 330 PLAl~ 334 (549)
T 2a5y_B 330 PATLM 334 (549)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 44443
No 130
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.44 E-value=0.00012 Score=76.31 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=46.3
Q ss_pred eeEEecCCCChHHHHHHHHHHhc-----CCCeEEeecchhHHH----hhcc-----------chHHH-HHHHHH---HHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVEL----YVGM-----------GASRV-RDLFAR---AKK 422 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el-----g~pfi~is~se~~~~----~vG~-----------~~~~v-r~lF~~---A~~ 422 (597)
-++|+||||+|||+|+-.++.++ +..+++++..+-... -.|. ....+ -.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 57899999999999988776543 567777776532211 1111 11122 222222 245
Q ss_pred cCCeEEEEcCcchhhh
Q 007591 423 EAPSIIFIDEIDAVAK 438 (597)
Q Consensus 423 ~~P~ILfIDEIDaL~~ 438 (597)
..|.+|+||-|.+|.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 6799999999999974
No 131
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.43 E-value=0.00013 Score=78.18 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=62.5
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------CCCeEEeecchhHH--------Hhhccc--------------
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEFVE--------LYVGMG-------------- 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------g~pfi~is~se~~~--------~~vG~~-------------- 409 (597)
|..+..-++|+||||+|||+|++.++-.. +...++++..+... ...|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 45666779999999999999999776332 23466776543200 001110
Q ss_pred -h----HHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 410 -A----SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 410 -~----~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
. ..+..+...+....|.+|+||++-.+....-.+ .+...++.+.+.+++..|..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg--~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG--RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0 112222333445679999999998876432110 11223344444555554444333334555555543
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.42 E-value=7.4e-05 Score=69.92 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=29.3
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
++.|+|+||||+|||++|+.+|..++.+|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999998765
No 133
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.42 E-value=0.00012 Score=75.40 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---------------C----CCeEEeecchh--HH----H--hhcc-----
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------------E----VPFISCSASEF--VE----L--YVGM----- 408 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---------------g----~pfi~is~se~--~~----~--~vG~----- 408 (597)
|.++..-++|+||||+|||+||..+|..+ | .++++++...- .+ . -.|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34555668999999999999999998752 2 46667765432 11 0 0111
Q ss_pred ----------chH----HHHHHHHHHHh-cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEE
Q 007591 409 ----------GAS----RVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (597)
Q Consensus 409 ----------~~~----~vr~lF~~A~~-~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VI 473 (597)
... .+..+...... ..+.+|+||.+..+......+ .+...++.+.+.+++..+..+....++.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~--~~~~~~r~~~~~~~~~~L~~la~~~~~~ 251 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG--RGKLAERQQKLGRHMATLNKLADLFNCV 251 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC--TTSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 011 11223333444 568899999999987532110 0111222334455555544433333445
Q ss_pred EEeec
Q 007591 474 VLGAT 478 (597)
Q Consensus 474 VIaaT 478 (597)
||++.
T Consensus 252 vi~~n 256 (322)
T 2i1q_A 252 VLVTN 256 (322)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55443
No 134
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.00056 Score=66.37 Aligned_cols=39 Identities=31% Similarity=0.278 Sum_probs=29.1
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHh----cCCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~e----lg~pfi~is~s 399 (597)
|.++..-++|+|+||+|||++|..+|.+ .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4555667999999999999999887643 36677766543
No 135
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.40 E-value=0.0003 Score=69.97 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 338 de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
++.+..+++++..+.... .....|..++|.||||+||||+|+.++..++.+++.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 9 SEFKHALARNLRSLTRGK----KSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHHHTTC----CCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHHHccC----CcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344445555544432211 124556779999999999999999999999877777877665
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.38 E-value=0.00028 Score=72.01 Aligned_cols=60 Identities=28% Similarity=0.400 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 338 de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
++..+.+.+++..+... ......|..++|.||||+||||+|+.++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45555566655543221 1223456778999999999999999999988556677776544
No 137
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.37 E-value=9.3e-05 Score=91.62 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=54.9
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH----Hhhcc--------chHHHHHHHHHHH----
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGM--------GASRVRDLFARAK---- 421 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~----~~vG~--------~~~~vr~lF~~A~---- 421 (597)
|..++..++|+||||+|||+||..+|.++ +.++++++..+... ...|. .+..+.+++..++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46778889999999999999999998765 55777877654332 22221 1112344555443
Q ss_pred hcCCeEEEEcCcchhhh
Q 007591 422 KEAPSIIFIDEIDAVAK 438 (597)
Q Consensus 422 ~~~P~ILfIDEIDaL~~ 438 (597)
...|++|+||.++.+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999873
No 138
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.36 E-value=0.0002 Score=75.13 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=30.7
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhcC---------CCeEEeecch
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE 400 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~elg---------~pfi~is~se 400 (597)
|.++..-+.|+||||+|||+|++.++...- -..++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 455666789999999999999999998762 3456666543
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.36 E-value=0.00058 Score=74.14 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=104.5
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH-------Hh------------h-ccchHHHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY------------V-GMGASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~-------~~------------v-G~~~~~vr~lF~~A 420 (597)
+|.-++++|++|+||||++..+|..+ |..+..+++..+.. .+ . ......+++.+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754 55666565542211 00 0 11233456777788
Q ss_pred HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC--hhhhCCCCcceEE
Q 007591 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD--PALRRPGRFDRVV 498 (597)
Q Consensus 421 ~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld--~aLlRpgRFd~~I 498 (597)
....+.+|+||..-.+. .+...-..+..+.... .+...++|+-++.-.+.++ ..+.....++ -+
T Consensus 179 ~~~~~DvVIIDTaGrl~----------~d~~lm~el~~i~~~~---~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK----------EDKALIEEMKQISNVI---HPHEVILVIDGTIGQQAYNQALAFKEATPIG-SI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSS----------CCHHHHHHHHHHHHHH---CCSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EE
T ss_pred HhCCCCEEEEECCCccc----------chHHHHHHHHHHHHhh---cCceEEEEEeCCCchhHHHHHHHHHhhCCCe-EE
Confidence 77778899999874322 1222222233333333 2333455554443222211 1111111222 24
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCC-----------CCCCHHHHHHhCCCCCHHHHHHHHHHHHH----------HHHh
Q 007591 499 MVETPDKIGREAILKVHVSKKELPLA-----------KDIDLGDIASMTTGFTGADLANLVNEAAL----------LAGR 557 (597)
Q Consensus 499 ~v~~Pd~~eR~~ILk~~l~~~~l~l~-----------~dvdl~~LA~~t~G~SgaDL~~Lv~eAal----------~A~r 557 (597)
-+...|...+...+.......+.|+. ...+.+.++.+.-| -+|+..|+..|.. .+.+
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~~k 322 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKEVEIKEEDIER 322 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 44445554444333333333344432 12356777777755 3578777765422 2222
Q ss_pred cCCccccHHHHHHHHHHHh
Q 007591 558 LNKVVVEKIDFIHAVERSI 576 (597)
Q Consensus 558 ~~~~~It~~d~~~Al~rvi 576 (597)
-.+...|.+||.+-++.+.
T Consensus 323 ~~~~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 323 FLRGKFTLKDMYAQLEAMR 341 (443)
T ss_dssp HHTTCCCHHHHHHHHHHHH
T ss_pred HhhCCcCHHHHHHHHHHHH
Confidence 1234588899988887643
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.00011 Score=70.25 Aligned_cols=34 Identities=41% Similarity=0.591 Sum_probs=29.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.+++.++|.||||+||||+++++|+.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4556799999999999999999999999998754
No 141
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.33 E-value=9.6e-05 Score=70.57 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=22.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHh---cCCCeEEe
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE---AEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~i 396 (597)
.-++++||+|+|||+++..++.. .+..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35789999999999999666654 35555444
No 142
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.30 E-value=0.00014 Score=68.06 Aligned_cols=35 Identities=34% Similarity=0.587 Sum_probs=30.2
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
...|.-|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34566799999999999999999999999887764
No 143
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.30 E-value=0.00015 Score=71.67 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=43.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecch-------hHHHhhccc-----hHHHHHHHHHHHh----cCCe
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE-------FVELYVGMG-----ASRVRDLFARAKK----EAPS 426 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se-------~~~~~vG~~-----~~~vr~lF~~A~~----~~P~ 426 (597)
.-++++||+|+|||+++..++.++ +..++.+.... +.+. .|.. .....++++.+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 346778999999999998887755 56666654221 1111 1110 0112356665554 3478
Q ss_pred EEEEcCcchhh
Q 007591 427 IIFIDEIDAVA 437 (597)
Q Consensus 427 ILfIDEIDaL~ 437 (597)
+|+|||++.+.
T Consensus 92 vViIDEaQ~l~ 102 (223)
T 2b8t_A 92 VIGIDEVQFFD 102 (223)
T ss_dssp EEEECSGGGSC
T ss_pred EEEEecCccCc
Confidence 99999998753
No 144
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.28 E-value=0.0027 Score=70.95 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=55.2
Q ss_pred eEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC--CCChhhhCCCCcceEEEecCC
Q 007591 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETP 503 (597)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd--~Ld~aLlRpgRFd~~I~v~~P 503 (597)
-+|+|||++.+.... ..+.+..+.++..+- ...+|.+|.+|.+|. .|+..++. -|...|.+...
T Consensus 345 ivvVIDE~~~L~~~~--------~~~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 345 IVVVVDEFADMMMIV--------GKKVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEESCCTTHHHHT--------CHHHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred EEEEEeCHHHHhhhh--------hHHHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 589999999887532 123445555555543 356899999999996 88888876 78888999999
Q ss_pred CHHHHHHHHH
Q 007591 504 DKIGREAILK 513 (597)
Q Consensus 504 d~~eR~~ILk 513 (597)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 8888887774
No 145
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.21 E-value=0.00023 Score=66.78 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=33.7
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
...+..+.|.||||+||||+++.+++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3455678999999999999999999998888888877655
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.19 E-value=0.00018 Score=67.26 Aligned_cols=31 Identities=32% Similarity=0.610 Sum_probs=27.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
..|+|.|+||+|||++|+.++..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999999998754
No 147
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.16 E-value=0.00021 Score=66.63 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=29.1
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.++.|+|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 456799999999999999999999999888754
No 148
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.16 E-value=0.00036 Score=70.25 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=23.2
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.....-++|+||||+|||+|++.++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455668999999999999999998643
No 149
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.13 E-value=0.00025 Score=64.93 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=27.8
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998887654
No 150
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.0003 Score=64.91 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=27.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
+..+.|.||+|+||||+++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4569999999999999999999999876653
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.11 E-value=0.0023 Score=70.68 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=53.5
Q ss_pred CCe-EEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCC--CCChhhhCCCCcceEEEe
Q 007591 424 APS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMV 500 (597)
Q Consensus 424 ~P~-ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd--~Ld~aLlRpgRFd~~I~v 500 (597)
.|. +|+|||+..+.... ..+.+..+..+...- ...++.+|.+|.+|. .++..++. .|...|.+
T Consensus 296 lP~ivlvIDE~~~ll~~~--------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV--------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp CCEEEEEEETHHHHHHHH--------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred CCcEEEEEeCHHHHHhhh--------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 354 89999998876421 123344444444432 234788889999986 68888776 78888899
Q ss_pred cCCCHHHHHHHHHH
Q 007591 501 ETPDKIGREAILKV 514 (597)
Q Consensus 501 ~~Pd~~eR~~ILk~ 514 (597)
...+..+...|+..
T Consensus 362 rv~s~~dsr~ilg~ 375 (512)
T 2ius_A 362 TVSSKIDSRTILDQ 375 (512)
T ss_dssp CCSSHHHHHHHHSS
T ss_pred EcCCHHHHHHhcCC
Confidence 99998888887754
No 152
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00024 Score=66.98 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=28.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh-cCCCeEEe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE-AEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e-lg~pfi~i 396 (597)
.+..++|+|+||+|||++++.++.. +|.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3456999999999999999999999 68777654
No 153
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.10 E-value=0.00071 Score=67.64 Aligned_cols=39 Identities=28% Similarity=0.418 Sum_probs=32.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecchhHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~se~~~ 403 (597)
+.-|+|.|+||+|||++|+.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 456899999999999999999997 788888777665543
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.09 E-value=0.00028 Score=65.59 Aligned_cols=29 Identities=31% Similarity=0.733 Sum_probs=26.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
.++|.||||+|||++|+.+|..++.+|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988765
No 155
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.09 E-value=0.00033 Score=66.65 Aligned_cols=34 Identities=38% Similarity=0.495 Sum_probs=29.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
..|..|+|.|+||+||||+|+.++..++.+++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4456799999999999999999999999887654
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.05 E-value=0.00064 Score=73.63 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=30.4
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeec
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~ 398 (597)
|..+..-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666779999999999999999998753 567777664
No 157
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.05 E-value=0.0016 Score=64.31 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=29.3
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecc-hhH
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFV 402 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~s-e~~ 402 (597)
.++++||+|+|||.+|.+++.+++.+++.+... ++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 489999999999999999998887777766544 443
No 158
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.05 E-value=0.0003 Score=64.84 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=28.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
..++|.|+||+|||++++.+|.+++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999998764
No 159
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.04 E-value=0.00044 Score=77.39 Aligned_cols=97 Identities=28% Similarity=0.415 Sum_probs=55.1
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH----hhccchHHHHHHHHHH---------HhcCCeEEE
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL----YVGMGASRVRDLFARA---------KKEAPSIIF 429 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~----~vG~~~~~vr~lF~~A---------~~~~P~ILf 429 (597)
..++|.||||||||+++++++..+ +.+++.+..+.-... ..+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998743 666665543321111 1122222233333111 011346999
Q ss_pred EcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
|||+..+.. ..+..|+..+ .....+++++-.+.
T Consensus 285 IDEasml~~---------------~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMGD---------------ALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCCH---------------HHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCCCH---------------HHHHHHHHhC---cCCCEEEEEecccc
Confidence 999976631 2334454433 34556777766554
No 160
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00029 Score=65.78 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.7
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
|.-|+|.|+||+||||+|+.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999998876543
No 161
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.01 E-value=0.00032 Score=65.30 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.5
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.+..|+|.|+||+|||++|+.++..++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456789999999999999999999998776654
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.01 E-value=0.00056 Score=69.24 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=28.7
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEee
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCS 397 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is 397 (597)
+..+..-++|.||||+|||+|++.+|..+ |.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45566678999999999999999998864 44555543
No 163
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.98 E-value=0.00036 Score=65.44 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.+..|+|.|+||+||||+|+.++..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 355799999999999999999999999887654
No 164
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.97 E-value=0.00035 Score=63.55 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=25.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
-++|.||||+||||+|+.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8889887764
No 165
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.96 E-value=0.00048 Score=65.51 Aligned_cols=32 Identities=31% Similarity=0.702 Sum_probs=28.4
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
+.-|+|.|+||+||||+|+.+++.++.+++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 56799999999999999999999998877653
No 166
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.95 E-value=0.00042 Score=63.79 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=27.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
+.|+|.|+||+|||++|+.++..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999887653
No 167
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.95 E-value=0.00037 Score=64.30 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=24.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHH-hcCCCeE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAG-EAEVPFI 394 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~-elg~pfi 394 (597)
|.-|+|.||||+||||+|+.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 45689999999999999999998 4554443
No 168
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.00052 Score=66.29 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=28.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.+..|+|.|+||+||||+|+.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999877654
No 169
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.93 E-value=0.001 Score=71.89 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=30.2
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeec
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~ 398 (597)
|..+..-++|.|+||+|||+||..+|..+ +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 55666678999999999999999987643 567777665
No 170
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.93 E-value=0.00041 Score=67.47 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
..+..|+|.|+||+||||+|+.++.+++.+++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999998877654
No 171
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.93 E-value=0.00047 Score=68.85 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=28.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeec
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~ 398 (597)
-++|.||||+|||++|+++|++++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887764
No 172
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.90 E-value=0.00063 Score=63.44 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
..+..+.|.|++|+||||+++.+++.+ |.+++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 345568899999999999999999987 999998875433
No 173
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.90 E-value=0.00045 Score=64.18 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi 394 (597)
+.-|+|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999987
No 174
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.88 E-value=0.00045 Score=64.90 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=27.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
+.-|+|.|+||+||||+|+.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999998766554
No 175
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.87 E-value=0.0003 Score=74.30 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=44.3
Q ss_pred eeEEecCCCChHHHHHHHHHHhc----CCCeEEeec-chhH---------HHhhccchHHHHHHHHHHHhcCCeEEEEcC
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA-SEFV---------ELYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~-se~~---------~~~vG~~~~~vr~lF~~A~~~~P~ILfIDE 432 (597)
.++|.||+|+||||+.+++++.. +..++.+.- .++. ...++.....+.+.+..|....|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 58899999999999999998865 223332211 1110 001111122355678888889999999999
Q ss_pred cc
Q 007591 433 ID 434 (597)
Q Consensus 433 ID 434 (597)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 176
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.85 E-value=0.00047 Score=64.48 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=18.1
Q ss_pred CCCeeEEecCCCChHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKA 384 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkA 384 (597)
.+.-+.|.||+|+|||||+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445688999999999999995
No 177
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.85 E-value=0.00043 Score=64.45 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=23.0
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcC
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
.-++|.||||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 178
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.84 E-value=0.00044 Score=66.95 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=28.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
+..|+|.|+||+||||+|+.+|..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999999877654
No 179
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.84 E-value=0.0034 Score=62.30 Aligned_cols=162 Identities=21% Similarity=0.297 Sum_probs=83.1
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecch-----hHHHhhcc---------------chHHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE-----FVELYVGM---------------GASRVRDLFARAKK 422 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se-----~~~~~vG~---------------~~~~vr~lF~~A~~ 422 (597)
..+++.|+||+|||+++-.+|.++ |..+..+.... ......+. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 469999999999999999988764 66655444321 11111110 1122333322
Q ss_pred cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC------------------CCC
Q 007591 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS------------------DVL 484 (597)
Q Consensus 423 ~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp------------------d~L 484 (597)
..|.+++|||+-....... .+..+-+.+..++ ..++=|++|+|.. +.+
T Consensus 83 ~~pdlvIVDElG~~~~~~~------r~~~~~qDV~~~l--------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~v 148 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGS------RHTKRWQDIQELL--------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETL 148 (228)
T ss_dssp HCCSEEEESCTTCBCCTTC------SSSBHHHHHHHHH--------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCB
T ss_pred cCCCEEEEeCCCCCCcccc------hhHHHHHHHHHHH--------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcC
Confidence 4688999999875421110 1111222222222 2344566677632 344
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 007591 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (597)
Q Consensus 485 d~aLlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~l~l~~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~ 556 (597)
+..++. +-|.+.-++.|..+ +++. ++.-.+ ..++..-..+... |+...|..|-.-|...++
T Consensus 149 pd~~~~--~a~~v~lvD~~p~~----l~~r-l~~g~v-y~~~~~~~a~~~~---f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 149 PDWVLQ--EAFDLVLIDLPPRE----LLER-LRDGKV-YVPEQARAAIDAF---FTQTNLTALREMAMQTAA 209 (228)
T ss_dssp CHHHHH--TCSEEEEBCCCHHH----HHHH-HHTTCC-CCTTCCHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred ccHHHh--hCCeEEEecCCHHH----HHHH-HHCCCc-cChhHHHHHHHhh---hchhhHHHHHHHHHHHHH
Confidence 555554 55677778877655 2232 332222 2222222333322 566777666555555554
No 180
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.84 E-value=0.00057 Score=64.89 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=28.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.+.-|+|.|+||+|||++++.++.+++.+++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 3456899999999999999999999988766543
No 181
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.00057 Score=65.62 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=26.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.|+|.||||+||||+|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998887665
No 182
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.82 E-value=0.00051 Score=64.04 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=27.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
+..++|.|+||+||||+++.++..++.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 34589999999999999999999998776543
No 183
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.0021 Score=61.67 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+.|.||+|+|||||++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 184
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.81 E-value=0.00047 Score=69.51 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=44.3
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC----CCeEEeecchh--H---------HHhhccchHHHHHHHHHHHhcCCeE
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEF--V---------ELYVGMGASRVRDLFARAKKEAPSI 427 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg----~pfi~is~se~--~---------~~~vG~~~~~vr~lF~~A~~~~P~I 427 (597)
.+...++|.||+|+||||+++++++... -.++ +....+ . ...+|.....++..+..+....|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 3444688999999999999999998542 1221 111110 0 0001111234566777777778999
Q ss_pred EEEcCcc
Q 007591 428 IFIDEID 434 (597)
Q Consensus 428 LfIDEID 434 (597)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999983
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.81 E-value=0.0023 Score=65.96 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=29.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
|..+..-++|.|+||+|||+||..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45666679999999999999999998654 456666654
No 186
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.80 E-value=0.00058 Score=67.64 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
..|..|+|.||||+||||+|+.++.+++.+++++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3566799999999999999999999998777654
No 187
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.80 E-value=0.00081 Score=65.78 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=28.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.+..|+|.|+||+||||+|+.+|.+++.+++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345799999999999999999999999877654
No 188
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.79 E-value=0.00061 Score=65.31 Aligned_cols=30 Identities=40% Similarity=0.732 Sum_probs=26.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.|+|.||||+||||+|+.++.+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887755
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.78 E-value=0.00043 Score=66.98 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=27.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
.+..|+|.||||+||||+++.+|..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999876544
No 190
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.78 E-value=0.00083 Score=64.04 Aligned_cols=37 Identities=41% Similarity=0.731 Sum_probs=28.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
.++..+.|.||+|+||||+++.+++.+|..++ ++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i--~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA--EADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE--EGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE--ccccc
Confidence 34567899999999999999999999876554 44443
No 191
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.77 E-value=0.00066 Score=62.20 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=27.1
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.|+|.|+||+|||++|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999888753
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.73 E-value=0.00086 Score=62.09 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=26.6
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
+..++|.||+|+|||++++.+++.+|.+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4468899999999999999999988876654
No 193
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.73 E-value=0.00074 Score=66.45 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=31.5
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
.+.++-|+|.||||+||+|.|+.|+.+++++.+ +..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHHH
Confidence 345677899999999999999999999987654 4445443
No 194
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.70 E-value=0.0035 Score=61.42 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
....-+.|.||+|+|||||++++++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4556688999999999999999998764
No 195
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.65 E-value=0.0037 Score=64.55 Aligned_cols=73 Identities=26% Similarity=0.359 Sum_probs=46.7
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH-------Hh---h----------ccchHHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY---V----------GMGASRVRDLFA 418 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~-------~~---v----------G~~~~~vr~lF~ 418 (597)
..++.-++|.||+|+||||++..+|..+ +..+..+.+..+.. .+ . +.....+.+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456778999999999999999999864 44555554432211 11 0 011122234556
Q ss_pred HHHhcCCeEEEEcCcc
Q 007591 419 RAKKEAPSIIFIDEID 434 (597)
Q Consensus 419 ~A~~~~P~ILfIDEID 434 (597)
.+....|.+|+||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 6667788899999874
No 196
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.61 E-value=0.0093 Score=57.84 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=67.0
Q ss_pred eeEEecCCCChHHHHHHHHHHhc---CCCeEEe---ecc------hhHHHhh-----------------ccchHHHHHHH
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISC---SAS------EFVELYV-----------------GMGASRVRDLF 417 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el---g~pfi~i---s~s------e~~~~~v-----------------G~~~~~vr~lF 417 (597)
.|++|+++|.|||++|-++|-.+ |..+..+ .+. +++..+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58899999999999999997754 6666665 221 2333331 00123445566
Q ss_pred HHHHh----cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCChhhhCCCC
Q 007591 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (597)
Q Consensus 418 ~~A~~----~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~aLlRpgR 493 (597)
..++. ....+|+|||+-....-.- ... .+++..+...+ ...-||.|+|.+ ++.|+. .
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~-----l~~-------~ev~~~l~~Rp--~~~~vIlTGr~a---p~~l~e--~ 170 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY-----LPL-------EEVISALNARP--GHQTVIITGRGC---HRDILD--L 170 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS-----SCH-------HHHHHHHHTSC--TTCEEEEECSSC---CHHHHH--H
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC-----CCH-------HHHHHHHHhCc--CCCEEEEECCCC---cHHHHH--h
Confidence 66654 3467999999966532211 111 23445554333 334556677765 556655 5
Q ss_pred cceEEEec
Q 007591 494 FDRVVMVE 501 (597)
Q Consensus 494 Fd~~I~v~ 501 (597)
-|.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 55554443
No 197
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.58 E-value=0.0014 Score=69.41 Aligned_cols=73 Identities=25% Similarity=0.391 Sum_probs=45.4
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcC----CCeEEeecc-hh--------HH-HhhccchHHHHHHHHHHHhcCCeE
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSAS-EF--------VE-LYVGMGASRVRDLFARAKKEAPSI 427 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg----~pfi~is~s-e~--------~~-~~vG~~~~~vr~lF~~A~~~~P~I 427 (597)
..+...++|.||+|+||||+++++++... -.++.+... ++ +. ..+|.....+...+..+....|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 34455689999999999999999998642 222222211 00 00 001112223456677777788999
Q ss_pred EEEcCcc
Q 007591 428 IFIDEID 434 (597)
Q Consensus 428 LfIDEID 434 (597)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999983
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.58 E-value=0.0014 Score=62.99 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.9
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
..+.|.||+|+||||+++.+++.++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999987764
No 199
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.57 E-value=0.0015 Score=62.29 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=30.1
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
.++.-+.|.||+|+||||+++++++.+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 445678899999999999999999987 555445655443
No 200
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.57 E-value=0.0022 Score=61.02 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=24.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
.+.|.||+|+||||+++.+++ +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 8888764
No 201
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.56 E-value=0.0017 Score=61.36 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.3
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc-CCCeEEee
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is 397 (597)
.+.-|.|.|++|+||||+++.++..+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35568999999999999999999998 58887765
No 202
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0013 Score=68.54 Aligned_cols=34 Identities=35% Similarity=0.501 Sum_probs=30.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeec
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~ 398 (597)
++.++|+||+|+|||++|+.+|.+++.+++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999988888753
No 203
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.52 E-value=0.0012 Score=61.25 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=27.2
Q ss_pred eeEEecCCCChHHHHHHHHHHhcC---CCeEEeecchh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEF 401 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~se~ 401 (597)
-|+|.|+||+||||+|+.++..++ .++..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 488999999999999999999775 34555554443
No 204
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.51 E-value=0.0014 Score=63.88 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=27.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
.++|.||||+||+|.|+.||..++++.++ ..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is--tGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS--TGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc--HHHHH
Confidence 37889999999999999999999887654 34443
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.50 E-value=0.0017 Score=60.47 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=27.8
Q ss_pred eeEEecCCCChHHHHHHHHHHhc---CCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is 397 (597)
-+.|.|+||+||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89988765
No 206
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.49 E-value=0.0013 Score=63.25 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=27.0
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.++|.||||+||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 388999999999999999999999887665
No 207
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.47 E-value=0.0028 Score=60.89 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=20.9
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998754
No 208
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.46 E-value=0.013 Score=60.08 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=28.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~s 399 (597)
..+..++|.||+|+||||++..+|..+ |..+..+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356779999999999999999998754 5566655543
No 209
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.46 E-value=0.00092 Score=69.66 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=48.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecchhHH-----H---hhccchHHHHHHHHHHHhcCCeEEEEcCcc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE-----L---YVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se~~~-----~---~vG~~~~~vr~lF~~A~~~~P~ILfIDEID 434 (597)
...++|.||+|+|||||++++++... .-.+.+....-.. . ++..+....+..+..|....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 44699999999999999999999763 2233443321100 0 110033456778888888899999999985
Q ss_pred h
Q 007591 435 A 435 (597)
Q Consensus 435 a 435 (597)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.43 E-value=0.0013 Score=62.35 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=26.1
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.|.|.|++|+||||+++.+++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887776643
No 211
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.43 E-value=0.0022 Score=60.61 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.9
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
.+.|.|++|+|||++++.+|+.++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998887643
No 212
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.42 E-value=0.0085 Score=62.75 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
|..+..-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45566679999999999999999998763 667666654
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.40 E-value=0.0071 Score=65.42 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=96.6
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH----------Hhhc----------cchHHHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----------LYVG----------MGASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~----------~~vG----------~~~~~vr~lF~~A 420 (597)
+|.-+++.||+|+||||++..+|..+ |..+..+++..+.. ...| .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778999999999999999998754 55555555432110 0001 0112234455566
Q ss_pred HhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCCh--hhhCCCCcceEE
Q 007591 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP--ALRRPGRFDRVV 498 (597)
Q Consensus 421 ~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld~--aLlRpgRFd~~I 498 (597)
....+.+|+||....+... .....-..+..++..+ .+..-++|+-++.-.+.++- ++.....+ .-+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~--------~d~~lm~el~~i~~~~---~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG--------EETKLLEEMKEMYDVL---KPDDVILVIDASIGQKAYDLASRFHQASPI-GSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC--------CTTHHHHHHHHHHHHH---CCSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEE
T ss_pred HhcCCCEEEEECCCCcccc--------CCHHHHHHHHHHHHhh---CCcceEEEEeCccchHHHHHHHHHhcccCC-cEE
Confidence 6567889999988443200 1111223333344433 23333444444432222211 11110011 234
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCC-----C------CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc---------
Q 007591 499 MVETPDKIGREAILKVHVSKKELPL-----A------KDIDLGDIASMTTGFTGADLANLVNEAALLAGRL--------- 558 (597)
Q Consensus 499 ~v~~Pd~~eR~~ILk~~l~~~~l~l-----~------~dvdl~~LA~~t~G~SgaDL~~Lv~eAal~A~r~--------- 558 (597)
-+...|...+....-......+.|+ . ...+.+.++.+.-| .+|+..++..|.......
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~k~ 321 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILG--MGDIESILEKVKGLEEYDKIQKKMEDV 321 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHC--SSHHHHHHHHHHHC-------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcC--CchHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444444333322222222223331 1 12345667766544 248888887764322111
Q ss_pred CCc--cccHHHHHHHHHHHh
Q 007591 559 NKV--VVEKIDFIHAVERSI 576 (597)
Q Consensus 559 ~~~--~It~~d~~~Al~rvi 576 (597)
.+. ..|.+||.+-++.+.
T Consensus 322 ~~g~~~f~~~d~~~q~~~~~ 341 (433)
T 3kl4_A 322 MEGKGKLTLRDVYAQIIALR 341 (433)
T ss_dssp ------CCHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHH
Confidence 122 689999998888754
No 214
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.39 E-value=0.0017 Score=61.00 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=26.2
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
.|.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987764
No 215
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.37 E-value=0.016 Score=63.85 Aligned_cols=97 Identities=24% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh----HHHh--hc----------------------cc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VELY--VG----------------------MG 409 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~----~~~~--vG----------------------~~ 409 (597)
+..+...++|.||+|+|||+|++.+++.. |-+.+++...+- .... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45566679999999999999999998754 445555543221 1100 00 12
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhc
Q 007591 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (597)
Q Consensus 410 ~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd 464 (597)
....+.++..+....|.+|+||=+..|.... ...+....+..++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~-------~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV-------SNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC-------ChHHHHHHHHHHHHHHH
Confidence 3455667777777889999999665554321 11224455566666664
No 216
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.37 E-value=0.015 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=19.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+.+++.+|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999998877664
No 217
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.37 E-value=0.015 Score=54.76 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=15.5
Q ss_pred CeeEEecCCCChHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAk 383 (597)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 218
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.36 E-value=0.0019 Score=60.81 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=29.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~ 403 (597)
+..|.|.|++|+|||++++.++.. |.+++. ..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id--~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD--LDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc--ccHHHH
Confidence 456899999999999999999998 877765 444433
No 219
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.31 E-value=0.002 Score=62.62 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.0
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.++|.||||+||||+|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998766543
No 220
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.29 E-value=0.0026 Score=59.50 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.2
Q ss_pred eEEecCCCChHHHHHHHHHHhc---CCCeEEee
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~is 397 (597)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99988664
No 221
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.28 E-value=0.0011 Score=70.10 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=27.0
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
.+++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 359999999999999999999999888855
No 222
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.28 E-value=0.0028 Score=60.84 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
..+.-+.|.||+|+|||||++.+++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999999999764
No 223
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.28 E-value=0.0027 Score=62.49 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
.|..+.|.||+|+||||+++.++.++|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 35679999999999999999999998877654
No 224
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.22 E-value=0.0012 Score=62.67 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCC
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~p 392 (597)
.+.-|+|.|+||+||||+++.++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35678999999999999999999987544
No 225
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.22 E-value=0.0033 Score=62.19 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=31.6
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCe--------EEeecchhH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--------ISCSASEFV 402 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pf--------i~is~se~~ 402 (597)
.+.-|.|.|++|+|||++|+.++..++.++ ..++..++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 455689999999999999999999998773 356666654
No 226
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.22 E-value=0.0059 Score=66.74 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=30.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~s 399 (597)
|..+..-++|.|+||+|||+||..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 55666778999999999999999988754 5677777653
No 227
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.20 E-value=0.011 Score=66.59 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.3
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+.+++.||||||||+++.++...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999998877643
No 228
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.20 E-value=0.0029 Score=62.95 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=27.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
|..+.|.||||+|||++++.++..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999999977754
No 229
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.18 E-value=0.0047 Score=59.87 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=23.2
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..++-+.|.||+|+|||+|++++++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345668899999999999999999865
No 230
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.17 E-value=0.0037 Score=59.00 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=25.9
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCC--eEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP--FIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~p--fi~ 395 (597)
+.-|+|.|+||+||||+|+.++..++.. ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 3458899999999999999999988763 544
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.16 E-value=0.0047 Score=58.96 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
...++-++|.||||+|||++++.++..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34566799999999999999999999874
No 232
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.12 E-value=0.0045 Score=59.46 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
++.-+.|.||+|+|||++++.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455688999999999999999998763
No 233
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.11 E-value=0.0033 Score=63.03 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=28.6
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
...+.|.|++|+||||+++.+|+.++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45699999999999999999999999888764
No 234
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.10 E-value=0.0086 Score=58.03 Aligned_cols=69 Identities=20% Similarity=0.139 Sum_probs=42.0
Q ss_pred CCeeEEecCCCChHH-HHHHHHHH--hcCCCeEEeecc---hh----HHHhhcc-----chHHHHHHHHHHHhcCCeEEE
Q 007591 365 PRGVLLVGLPGTGKT-LLAKAVAG--EAEVPFISCSAS---EF----VELYVGM-----GASRVRDLFARAKKEAPSIIF 429 (597)
Q Consensus 365 p~gVLL~GPPGTGKT-~LAkAIA~--elg~pfi~is~s---e~----~~~~vG~-----~~~~vr~lF~~A~~~~P~ILf 429 (597)
.+-.++|||.|+||| .|.+++.+ +.+..++.+... .+ .+.. |. ......++++..+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhcc-CCcccceecCCHHHHHHhcc--CCCEEE
Confidence 445778999999999 89998866 346777777643 11 1111 10 0011223333322 246999
Q ss_pred EcCcchh
Q 007591 430 IDEIDAV 436 (597)
Q Consensus 430 IDEIDaL 436 (597)
|||++-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999887
No 235
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.09 E-value=0.0016 Score=61.92 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
.+.-|+|.|+||+||||+++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998764
No 236
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.08 E-value=0.11 Score=49.42 Aligned_cols=58 Identities=17% Similarity=0.052 Sum_probs=34.8
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCC---CCCCeeEEecCCCChHHHHHHHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~---~~p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
..+|+|+.-.++..+.|.+. .+..|..++.... ...+.+++.+|+|+|||..+-..+-
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 45688887666666666542 1333333332211 1235699999999999987665543
No 237
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.08 E-value=0.0027 Score=60.53 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=27.1
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc-CCCeEEee
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is 397 (597)
++.-+.|.||+|+||||+++.+++.+ +++++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 34457899999999999999999987 66655443
No 238
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.06 E-value=0.0029 Score=66.40 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~s 399 (597)
++-++|.||+|+|||+|+..||.+++.+++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 44688999999999999999999999888776543
No 239
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.00 E-value=0.0066 Score=58.30 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=29.6
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~ 405 (597)
.|.|+|++|+||||+++.++..+|++++.. .++....
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~--D~~~~~~ 50 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV--DRIGHEV 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH--HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC--cHHHHHH
Confidence 478999999999999999999889887654 4454433
No 240
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.99 E-value=0.0053 Score=57.41 Aligned_cols=38 Identities=29% Similarity=0.248 Sum_probs=29.1
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
.+..++|.|+||+|||++++.++..+ +.++..++...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45568899999999999999999876 445555654433
No 241
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.96 E-value=0.0047 Score=59.17 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=28.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
|..+.|.|++|+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999999887654
No 242
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.96 E-value=0.0071 Score=64.77 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=27.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
..|.-|+|+|+||+||||+|+.++.+++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 446678899999999999999999998765543
No 243
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.96 E-value=0.041 Score=55.79 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=33.6
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCC----CCCCeeEEecCCCChHHHHHHHHHH
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA----RPPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~----~~p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
.+|+++.-.++..+.|++. .+..+..++.... ...+.+++.+|+|+|||+.+-..+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 5677776666666665542 1222222222111 1236799999999999998665443
No 244
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.96 E-value=0.018 Score=63.40 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=62.2
Q ss_pred CCCCCeeEEecCCCChHHHHHHH--HHHhc--CCCeEEeecchhHHH------hhcc-----------------------
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKA--VAGEA--EVPFISCSASEFVEL------YVGM----------------------- 408 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkA--IA~el--g~pfi~is~se~~~~------~vG~----------------------- 408 (597)
..+...++|.||+|+|||+|++. +++.. +-.-+++++.+.... ..|.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 34566799999999999999999 44532 344555554331100 0000
Q ss_pred -------chHHHHHHHHHHHhcCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCC
Q 007591 409 -------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (597)
Q Consensus 409 -------~~~~vr~lF~~A~~~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrp 481 (597)
-...............|.+|+|||+-++.... ..+....+.+..++..+.. .++.||.+|.+.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~------~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~ 185 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY------DASSVVRRELFRLVARLKQ----IGATTVMTTERI 185 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT------CCHHHHHHHHHHHHHHHHH----HTCEEEEEEECS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc------CCHHHHHHHHHHHHHHHHH----CCCEEEEEecCC
Confidence 01112233334445678899999997764321 1122334455666666642 234555566665
Q ss_pred CCC
Q 007591 482 DVL 484 (597)
Q Consensus 482 d~L 484 (597)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
No 245
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.96 E-value=0.005 Score=61.17 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
...+.|.||+|+||||+++.+|..+|.+++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468899999999999999999999987764
No 246
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.95 E-value=0.0049 Score=60.27 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
..+..+.|.|++|+|||++++.+++.+|++++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 4556789999999999999999999999887653
No 247
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.94 E-value=0.0047 Score=59.30 Aligned_cols=31 Identities=32% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
+.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45688999999999999999998 88776654
No 248
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.93 E-value=0.0027 Score=64.03 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=27.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc-CCCeEEeecchhH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFV 402 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi~is~se~~ 402 (597)
|.-++|.|+||+||||+|+.++.+. +.+++ +...+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i--~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI--NRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE--CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe--cccHHH
Confidence 4568999999999999999999874 55544 433443
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.93 E-value=0.0042 Score=59.60 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchh
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF 401 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~ 401 (597)
..+.-++|.|++|+||||+++.+++.+ |.+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 345568899999999999999999865 466787776544
No 250
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.88 E-value=0.016 Score=64.10 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=31.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~~ 404 (597)
+.-|+|+|.||+|||++|+.+|..+ +.+...++..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 4568999999999999999999987 455556666655444
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.005 Score=57.69 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.++-+.|.||+|+|||||++.+++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999875
No 252
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.85 E-value=0.0045 Score=64.22 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=29.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCCeEEeec
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~ 398 (597)
.|+-++|.||+|+|||+||..+|.+++.++++++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45568899999999999999999999877777643
No 253
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.85 E-value=0.0046 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.++.-+.|.||+|+||||+++.+++..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345668899999999999999999876
No 254
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.84 E-value=0.035 Score=54.04 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.5
Q ss_pred CeeEEecCCCChHHHHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA 386 (597)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 569999999999998766554
No 255
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.83 E-value=0.028 Score=53.99 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCCcCcccccCC-hHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHHH
Q 007591 326 GDTITFADVAGV-DEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 326 ~~~vtf~dV~G~-de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAk 383 (597)
.|..+|+|..+. .+..+.|.+. .+..|..++... ....+.+++.+|+|+|||+.+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 355678885444 4444444432 133333333221 1134679999999999998543
No 256
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.78 E-value=0.018 Score=66.63 Aligned_cols=59 Identities=17% Similarity=0.021 Sum_probs=33.6
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhh----CCCCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRL----GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~l----g~~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+...|+++.-.+...+.|.+.- ..|-..+.. .......+++.||+|+|||+++..++.+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~---~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR---ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT---TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhh---cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456777766665555554432 112100000 0112346999999999999988777654
No 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.74 E-value=0.015 Score=69.13 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=34.1
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 335 ~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+|.++..++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 88998888888776421 12456889999999999999999863
No 258
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.71 E-value=0.0044 Score=62.74 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=27.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~ 402 (597)
|.-|.|.|++|+||||+|+.++ ++|.+++. +.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id--~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID--SDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE--HHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe--hhHHH
Confidence 4568999999999999999999 67877654 44443
No 259
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.71 E-value=0.033 Score=60.26 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
|..+..-++|.|+||+|||+||-.+|..+ |.++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56666679999999999999999987754 667777654
No 260
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.68 E-value=0.015 Score=55.46 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=28.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~s 399 (597)
..+.-+.|.||+|+|||++++.+++.+ +.+++..+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 345568899999999999999999865 6666655443
No 261
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.62 E-value=0.035 Score=65.37 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=55.4
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHh-----cCC--Ce------------EEeecchhHHHhhccchHHHHHHHHHHH-h
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGE-----AEV--PF------------ISCSASEFVELYVGMGASRVRDLFARAK-K 422 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~e-----lg~--pf------------i~is~se~~~~~vG~~~~~vr~lF~~A~-~ 422 (597)
....-++|.||.|+||||+.|.++.- .|. |- -.+...+............++++...+. .
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a 750 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKA 750 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhc
Confidence 44566899999999999999998752 121 10 0111112111111111112222222222 4
Q ss_pred cCCeEEEEcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCCCCCCC
Q 007591 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (597)
Q Consensus 423 ~~P~ILfIDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNrpd~Ld 485 (597)
..|.+|++||.-+= ........+...++..+.. ..+..+|.+|...+...
T Consensus 751 ~~p~LlLLDEP~~G----------lD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 751 TSQSLVILDELGRG----------TSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CTTCEEEEESTTTT----------SCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred cCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 67899999998431 1222333444466665521 12456777888765443
No 262
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.53 E-value=0.062 Score=51.23 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=32.3
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLL 381 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~L 381 (597)
..+|+++.-.++..+.|.+. .+..+..++... ....+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 45788887666666666543 123333332211 11236799999999999987
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.51 E-value=0.0054 Score=58.36 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=26.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC--CCeEE
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFIS 395 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~ 395 (597)
++.-+.|.||+|+|||||++.+++.++ +.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 445688999999999999999999877 54443
No 264
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.49 E-value=0.024 Score=60.99 Aligned_cols=94 Identities=15% Similarity=0.255 Sum_probs=52.7
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhcCC---CeEEeecc-hhHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSAS-EFVE 403 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~elg~---pfi~is~s-e~~~ 403 (597)
..+++++.-..+.+..|+.++ .. +...++|.||+|+||||+++++++.... .++.+.-+ ++.-
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~~----------~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---KR----------PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---TS----------SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---Hh----------cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 356777655555444555542 11 2234789999999999999999997642 23332211 1100
Q ss_pred -----Hhhcc-chHHHHHHHHHHHhcCCeEEEEcCcc
Q 007591 404 -----LYVGM-GASRVRDLFARAKKEAPSIIFIDEID 434 (597)
Q Consensus 404 -----~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEID 434 (597)
..+.. ..-.....+..+....|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 00000 01123344555666789999999853
No 265
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.48 E-value=0.0071 Score=63.43 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=27.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
+-|+|.||+|+|||+||+.+|..++..+++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999987766654
No 266
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.47 E-value=0.0057 Score=67.50 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=46.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecch-hHH---Hh--------hccchHHHHHHHHHHHhcCCeEEE
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASE-FVE---LY--------VGMGASRVRDLFARAKKEAPSIIF 429 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~se-~~~---~~--------vG~~~~~vr~lF~~A~~~~P~ILf 429 (597)
.+.+++|.||+|+||||+++++++... ...+.+.... +.- .. ++...-.+.+++..+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345699999999999999999999763 2344443322 110 00 011122355667777778999999
Q ss_pred EcCcc
Q 007591 430 IDEID 434 (597)
Q Consensus 430 IDEID 434 (597)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99974
No 267
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.45 E-value=0.0088 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
++.-+.|.||+|+|||||++.+++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999975
No 268
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.44 E-value=0.0079 Score=57.86 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=40.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecch--------hHHHhhccc-----hHHHHHHHHHHHhcCCeEEE
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE--------FVELYVGMG-----ASRVRDLFARAKKEAPSIIF 429 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se--------~~~~~vG~~-----~~~vr~lF~~A~~~~P~ILf 429 (597)
+-.+++||+|+|||+.+-.++.++ +..++.+.... +.+ ..|.. .....++++.+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 457789999999999888887754 66655553210 000 01100 0111345554432 346999
Q ss_pred EcCcchh
Q 007591 430 IDEIDAV 436 (597)
Q Consensus 430 IDEIDaL 436 (597)
|||++.+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999875
No 269
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.43 E-value=0.01 Score=56.62 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=21.9
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+++.+.|.||+|+|||||++.+++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568999999999999999999865
No 270
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.38 E-value=0.072 Score=60.01 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=34.9
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecc
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~s 399 (597)
+.|-+---.+++++++..++. . +.-.||.||||||||+++-.+..+ .+..+..+..+
T Consensus 183 ~~~~~~~LN~~Q~~AV~~al~---~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 183 LTFFNTCLDTSQKEAVLFALS---Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCCSSTTCCHHHHHHHHHHHH---C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccccCCCCCHHHHHHHHHHhc---C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 333333346777777776653 1 113689999999999865544333 26666666554
No 271
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.38 E-value=0.046 Score=53.20 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=30.3
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAk 383 (597)
+..+|+++.-.++..+.|.+. .+..|..++... ....+.+++.+|+|+|||+.+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 345677765555554444431 122232222211 1123579999999999998743
No 272
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.37 E-value=0.0096 Score=55.69 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.4
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecchh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~ 401 (597)
-+.|.||+|+||||+++.+++..+. .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986532 244555444
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.35 E-value=0.0089 Score=62.16 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=27.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeec
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~ 398 (597)
+-++|.||+|+|||+||..+|..++..+++.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 357889999999999999999988776665543
No 274
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.34 E-value=0.0095 Score=57.37 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=27.1
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
-|.|.||+|||||++++.+|..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999984
No 275
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.34 E-value=0.06 Score=55.48 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+++..-+.|.||+|+|||||++.+++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4556679999999999999999999854
No 276
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.31 E-value=0.068 Score=51.54 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=31.7
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LA 382 (597)
..+|+++.-.++..+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34688887666666666542 122333232211 112367999999999999854
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.21 E-value=0.0088 Score=58.34 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=27.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEeec
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~ 398 (597)
.++++|.||+|+|||+||..++...+ +++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46799999999999999999999866 6665443
No 278
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.17 E-value=0.01 Score=55.70 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+-+.|.||+|+|||||++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 279
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.12 E-value=0.13 Score=56.56 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.0
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
...+.-++|.||+|+|||||++.|++.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3456678899999999999999999865
No 280
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.03 E-value=0.042 Score=53.39 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=33.3
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAk 383 (597)
+..+|+++.-.++..+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 346799987666666655442 133333333221 1123679999999999998643
No 281
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.99 E-value=0.05 Score=51.96 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.4
Q ss_pred CeeEEecCCCChHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAk 383 (597)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 282
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.95 E-value=0.26 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=17.7
Q ss_pred CCCeeEEecCCCChHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAI 385 (597)
.++++++.+|+|+|||+.+-..
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 3478999999999999865543
No 283
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.94 E-value=0.025 Score=61.10 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~s 399 (597)
.|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45689999999999999999999865 4555555543
No 284
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.93 E-value=0.016 Score=65.46 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=32.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~ 401 (597)
.+..|+|.|+||+||||+|++++..+ |.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45568999999999999999999998 999999876543
No 285
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.91 E-value=0.011 Score=63.29 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=27.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEEee
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is 397 (597)
++-++|.||+|+|||+||..+|..++..+++++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345789999999999999999998876665543
No 286
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.90 E-value=0.071 Score=49.99 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.5
Q ss_pred CeeEEecCCCChHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAk 383 (597)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999997554
No 287
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.88 E-value=0.042 Score=56.88 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
..++..++|+||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3556779999999999999999998854 555555544
No 288
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.88 E-value=0.013 Score=56.94 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=17.0
Q ss_pred CCCCeeEEecCCCChHHHHHHHHH-Hhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVA-GEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA-~el 389 (597)
.++.-+.|.||+|+||||+++.++ +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345568899999999999999999 764
No 289
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.88 E-value=0.095 Score=58.37 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.1
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.++...+.|.||+|+|||||++.+++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4556678999999999999999999864
No 290
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.86 E-value=0.013 Score=59.90 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=24.5
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
...|.-|.|.||+|+||||||+.+++.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34566688999999999999999998764
No 291
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.82 E-value=0.076 Score=54.13 Aligned_cols=72 Identities=31% Similarity=0.285 Sum_probs=44.9
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh----HH---Hh---hc---------cch-HHHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VE---LY---VG---------MGA-SRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~----~~---~~---vG---------~~~-~~vr~lF~~A 420 (597)
.+..+.++|++|+|||+++..+|..+ +..+..+++.-. .. .+ .+ ... ...+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999854 444544443210 00 00 00 011 2235666776
Q ss_pred HhcCCeEEEEcCcch
Q 007591 421 KKEAPSIIFIDEIDA 435 (597)
Q Consensus 421 ~~~~P~ILfIDEIDa 435 (597)
....+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 656678999999744
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.77 E-value=0.044 Score=59.15 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=46.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc----CCCeEEeecchhHH----H---h---hc---------cc-hHHHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE----L---Y---VG---------MG-ASRVRDLFA 418 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~se~~~----~---~---vG---------~~-~~~vr~lF~ 418 (597)
.+|+.++++|++|+||||++-.+|..+ |..+..+++.-+.. . + .+ .. ...++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999988643 66777766652211 0 0 00 01 222356677
Q ss_pred HHHhcCCeEEEEcCcc
Q 007591 419 RAKKEAPSIIFIDEID 434 (597)
Q Consensus 419 ~A~~~~P~ILfIDEID 434 (597)
.+......+++||=.-
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 6665556799998753
No 293
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.76 E-value=0.016 Score=56.28 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.1
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..++.-+.|.||+|+|||||++.+++..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445568899999999999999999976
No 294
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.73 E-value=0.024 Score=55.66 Aligned_cols=30 Identities=13% Similarity=-0.002 Sum_probs=22.9
Q ss_pred eEEecCCCChHHHHHHHHHHhc---CCCeEEee
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~is 397 (597)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4579999999999888876644 66666654
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.72 E-value=0.048 Score=56.68 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.8
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+|.-+.|.||+|+||||+++.+|+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456778999999999999999999864
No 296
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.71 E-value=0.013 Score=61.50 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=45.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEeecc-hhH-----HH--hh-------cc-chHHHHHHHHHHHhcC
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFV-----EL--YV-------GM-GASRVRDLFARAKKEA 424 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~is~s-e~~-----~~--~v-------G~-~~~~vr~lF~~A~~~~ 424 (597)
.+...++|.||+|+|||||++++++... .-.+.+... ++. .. ++ +. ....+++.+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 4456799999999999999999999753 223333321 110 00 00 00 1223567777788888
Q ss_pred CeEEEEcCcc
Q 007591 425 PSIIFIDEID 434 (597)
Q Consensus 425 P~ILfIDEID 434 (597)
|.+++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 9999999975
No 297
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.69 E-value=0.11 Score=63.49 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.6
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
..++...+.|+||+|+|||||++.+.++..
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 345667799999999999999999999763
No 298
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.67 E-value=0.018 Score=54.94 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
.+..-+.|.||+|+|||||++++++...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4455688999999999999999999863
No 299
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.67 E-value=0.041 Score=60.64 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
..++.|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999999654 556655555
No 300
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.62 E-value=0.12 Score=53.98 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEee
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is 397 (597)
.+..|.|+|+||+|||+|+.+++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34568999999999999999998764 44444443
No 301
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.61 E-value=0.021 Score=53.11 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++++++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3445568899999999999999999986
No 302
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.61 E-value=0.12 Score=53.73 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=33.8
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAkAI 385 (597)
..+|+++.-.++..+.|.+. .+..|..++... ....+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 45788887666666666542 123333232221 112367999999999999766543
No 303
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.031 Score=51.64 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.....|++.|++|+|||+|+.++.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 304
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.49 E-value=0.017 Score=57.25 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.5
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEe
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~i 396 (597)
.+-|.||||+||||+|+.++..+++++++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 367899999999999999999999887654
No 305
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.47 E-value=0.027 Score=57.80 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..++.-+.|.||+|+||||+++.+|+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456678899999999999999999865
No 306
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.47 E-value=0.075 Score=57.56 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=28.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC---CCeEEeecchh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEF 401 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~se~ 401 (597)
.+..|+|.|.||+|||++++.++..++ .+...++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 345699999999999999999998764 45555554333
No 307
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.46 E-value=0.078 Score=62.55 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.4
Q ss_pred CCCeeEEecCCCChHHHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
...-++|.||.|+||||+.|.++.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999953
No 308
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.44 E-value=0.12 Score=59.91 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.6
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
....++|+||.|+|||++.|.+++-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456889999999999999999874
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.43 E-value=0.023 Score=58.60 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=26.0
Q ss_pred hCCCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 360 lg~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+.+++...+.|+||+|+|||||++.|++.+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345667779999999999999999999876
No 310
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.39 E-value=0.17 Score=49.63 Aligned_cols=55 Identities=25% Similarity=0.243 Sum_probs=31.9
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAk 383 (597)
+..+|+++.-.++..+.|.+.- +..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLG--WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTT--CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 3456888765565555554321 22333232211 1123679999999999998643
No 311
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.39 E-value=0.14 Score=57.20 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.8
Q ss_pred CCCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 361 g~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..++...+.|.||+|+|||||++.+++..
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 35566779999999999999999999854
No 312
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.39 E-value=0.25 Score=50.61 Aligned_cols=56 Identities=20% Similarity=0.090 Sum_probs=32.9
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHHHHHH
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAkAIA 386 (597)
.+|+++.-..+..+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHH
Confidence 4577776666666665542 133333333221 1224679999999999998765443
No 313
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.38 E-value=0.02 Score=56.20 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=24.4
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcCCC
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg~p 392 (597)
.+.-+-|.||+|+||||+++.+++.+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34457899999999999999999987754
No 314
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.32 E-value=0.049 Score=59.47 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..++|+||+|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358999999999999999887653
No 315
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.27 E-value=0.19 Score=51.46 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=32.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCC---CCCCeeEEecCCCChHHHHHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~---~~p~gVLL~GPPGTGKT~LAk 383 (597)
+..+|+++.-.++..+.|... .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 446788886666666666542 1223332222211 113569999999999998743
No 316
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.20 E-value=0.018 Score=58.67 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=25.9
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcC---CCeEEeecchhH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFV 402 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg---~pfi~is~se~~ 402 (597)
+.-|.|.||+|+||||+|+.++..++ ..+..+++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34588999999999999999998765 445556655553
No 317
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.20 E-value=0.11 Score=59.09 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.3
Q ss_pred CCCeeEEecCCCChHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAk 383 (597)
...++++.||+|+|||+.+.
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35789999999999999873
No 318
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.17 E-value=0.13 Score=56.76 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.0
Q ss_pred CCCeeEEecCCCChHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LA 382 (597)
..+.+++.+|+|+|||+.+
T Consensus 59 ~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHH
Confidence 3568999999999999853
No 319
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.16 E-value=0.024 Score=55.77 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=27.2
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
.-|.|.|++|||||++|+.+|..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357889999999999999999999999865
No 320
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.13 E-value=0.029 Score=53.56 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=28.0
Q ss_pred eEEecCCCChHHHHHHHHHHhcCCCeEEeecch
Q 007591 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (597)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~is~se 400 (597)
+|++|++|+|||++|..++.. +.|.+++.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888876543
No 321
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.12 E-value=0.063 Score=56.28 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.6
Q ss_pred CCeeEEecCCCChHHHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAI 385 (597)
.+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 357999999999999954433
No 322
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.11 E-value=0.15 Score=50.89 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=24.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeec
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~ 398 (597)
+.+++.+|+|+|||+.+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 469999999999999777666555655555543
No 323
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.10 E-value=0.1 Score=58.28 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.++..-+.|.||+|+|||||++.+++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4566679999999999999999999854
No 324
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.09 E-value=0.074 Score=59.44 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=32.5
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC----CCeEEeecchhH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFV 402 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg----~pfi~is~se~~ 402 (597)
.+..|+|.|+||+|||++|++++..++ .+++.++...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 345688999999999999999999875 888888866543
No 325
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.08 E-value=0.011 Score=55.97 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.5
Q ss_pred eeEEecCCCChHHHHHHHHHHhcC
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998874
No 326
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.07 E-value=0.11 Score=55.60 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=28.0
Q ss_pred eeEEecCCCChHHHHHHHHHHhcCCCeEEeecc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~s 399 (597)
.++|.+|+|+|||..+-.++.+.+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999988888888777776554
No 327
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.05 E-value=0.25 Score=51.04 Aligned_cols=58 Identities=22% Similarity=0.096 Sum_probs=33.3
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhCC---CCCCeeEEecCCCChHHHHHHHHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGA---RPPRGVLLVGLPGTGKTLLAKAVA 386 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg~---~~p~gVLL~GPPGTGKT~LAkAIA 386 (597)
...+|+++.-.++..+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 346788887666666666542 1222332222111 113569999999999998654433
No 328
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.98 E-value=0.15 Score=57.89 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=31.9
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhh--h--CCCCCCeeEEecCCCChHHHHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR--L--GARPPRGVLLVGLPGTGKTLLAKA 384 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~--l--g~~~p~gVLL~GPPGTGKT~LAkA 384 (597)
..+|+++.-.+..++.+.+. .+..+..++. + ......++++.||+|+|||+.+-.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~--g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKR--GIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTT--SCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHH
Confidence 45677776555555444431 0111111111 1 123467899999999999998843
No 329
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.97 E-value=0.12 Score=53.38 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=30.9
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHHHH
Q 007591 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLAKA 384 (597)
Q Consensus 329 vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LAkA 384 (597)
.+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-.
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 4677766666665555442 122232222211 11245699999999999987543
No 330
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.95 E-value=0.036 Score=58.41 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..++.-++|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4456678999999999999999999865
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.93 E-value=0.028 Score=57.52 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
..+.-+.|.||+|+|||||++.+++.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445688999999999999999999765
No 332
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.89 E-value=0.032 Score=54.74 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=26.3
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC--CCeEEe
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISC 396 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg--~pfi~i 396 (597)
.+.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 345578899999999999999999875 455543
No 333
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.87 E-value=0.065 Score=54.82 Aligned_cols=71 Identities=25% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchh----HH---Hh---hc----------cchHHHHHHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF----VE---LY---VG----------MGASRVRDLFARAK 421 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~----~~---~~---vG----------~~~~~vr~lF~~A~ 421 (597)
+..+++.|++|+|||+++..+|..+ +..+..+++.-. .. .+ .+ .....+.+.+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678889999999999999998765 555555554311 00 00 00 11222345666666
Q ss_pred hcCCeEEEEcCcch
Q 007591 422 KEAPSIIFIDEIDA 435 (597)
Q Consensus 422 ~~~P~ILfIDEIDa 435 (597)
.....+|+||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 55667999998543
No 334
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.66 E-value=0.27 Score=48.63 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.4
Q ss_pred CeeEEecCCCChHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAk 383 (597)
+.+++.+|+|+|||+.+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998654
No 335
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.63 E-value=0.24 Score=54.07 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.6
Q ss_pred CCCeeEEecCCCChHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLL 381 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~L 381 (597)
..+.+++.+|+|+|||+.
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 356899999999999985
No 336
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.63 E-value=0.32 Score=46.79 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHHH
Q 007591 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 327 ~~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~LA 382 (597)
+..+|+++.-.++..+.|.+. .+..+..++... ....+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 346788886666666666542 133333333221 112467999999999999863
No 337
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.62 E-value=0.17 Score=50.34 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=48.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh---cCCCeEEeecc-------hhHHHhhccc-----hHHHHHHHHHHHhcCCeEEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS-------EFVELYVGMG-----ASRVRDLFARAKKEAPSIIF 429 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e---lg~pfi~is~s-------e~~~~~vG~~-----~~~vr~lF~~A~~~~P~ILf 429 (597)
..-.+++||.|+|||+.+-..+.. .|..++.+... .+.+.. |.. .....++++.+ ....+|+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvVi 95 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIG 95 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEE
Confidence 344667899999999766555443 35555554311 111111 100 00112344444 3356999
Q ss_pred EcCcchhhhhcCCccccccchHHHHHHHHHHHhhcCCCCCCcEEEEeecCC
Q 007591 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (597)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~e~~Ln~LL~emd~~~~~~~VIVIaaTNr 480 (597)
|||+.-+.. +.+++..++. .++.||++.-+
T Consensus 96 IDEaQF~~~-----------------v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 96 IDEGQFFPD-----------------IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp ESSGGGCTT-----------------HHHHHHHHHH----TTCEEEEECCS
T ss_pred EEchhhhhh-----------------HHHHHHHHHh----CCCEEEEEecc
Confidence 999987630 3555565553 34566666644
No 338
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.58 E-value=0.15 Score=53.18 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=24.7
Q ss_pred eeEEecCCCChHHHHHHHHHHhc----CCCeEEeec
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~ 398 (597)
++++.+|+|+|||+.+-+++.+. +.+++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 68999999999999888876654 555555544
No 339
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.46 E-value=0.31 Score=56.42 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 338 DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 338 de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
+.+++.+.++...+.. ..+.++|+.||+|+|||..+-..+-+. +...+.+..
T Consensus 371 ~~Q~~ai~~I~~~l~~---------~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 371 NAQKRAHQEIRNDMIS---------EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHHHHHHHS---------SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred HHHHHHHHHHHhhccc---------cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4455555555543322 345679999999999999876554332 555555543
No 340
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.43 E-value=0.043 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
...-+.|.||+|+|||+|++.++.++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999998864
No 341
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.38 E-value=0.21 Score=57.71 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...++|.||.|+||||+.|.+++-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456889999999999999999873
No 342
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.23 Score=55.81 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.4
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+..-+-|.||.|+|||||.+.+++..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34568899999999999999999854
No 343
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.31 E-value=0.023 Score=56.41 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=25.6
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc-CCCeE
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFI 394 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el-g~pfi 394 (597)
.+.-|.|.|++|+||||+++.++..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 44568899999999999999999998 54444
No 344
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.29 E-value=0.23 Score=53.49 Aligned_cols=71 Identities=30% Similarity=0.275 Sum_probs=43.4
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhH-------HHh---hc---------cc-hHHHHHHHHHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELY---VG---------MG-ASRVRDLFARA 420 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~-------~~~---vG---------~~-~~~vr~lF~~A 420 (597)
++..+++.||+|+||||++..+|..+ +..+..+++.-+. ..+ .+ .. ....++.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999865 4455554442110 000 00 01 12235666666
Q ss_pred HhcCCeEEEEcCcc
Q 007591 421 KKEAPSIIFIDEID 434 (597)
Q Consensus 421 ~~~~P~ILfIDEID 434 (597)
+.....+++||=.-
T Consensus 177 ~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 177 RLEARDLILVDTAG 190 (425)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HHCCCCEEEEcCCC
Confidence 54556789998553
No 345
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.29 E-value=0.077 Score=55.05 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=23.8
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhcC
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
..|.-+.|.||+|+||||+++.+++.++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455688999999999999999998764
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.18 E-value=0.047 Score=56.25 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+.-+.|.||+|+|||||++.|++.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445568899999999999999999965
No 347
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.16 E-value=0.051 Score=55.81 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.0
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+.-+.|.||+|+||||+++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999865
No 348
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.14 E-value=0.094 Score=58.37 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhcC----CCeEEeecchhHH
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVE 403 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~elg----~pfi~is~se~~~ 403 (597)
.+..+.|.|++|+|||||+++|++.++ ..+..+++.++..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 445688999999999999999999874 3455577766543
No 349
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.14 E-value=0.15 Score=57.73 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=17.0
Q ss_pred CCeeEEecCCCChHHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKA 384 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkA 384 (597)
.+++++.||+|+|||+.+-.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHH
Confidence 45799999999999998843
No 350
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.10 E-value=0.053 Score=52.90 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc-CCC
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA-EVP 392 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el-g~p 392 (597)
|.-+.|.|++|+||||+++.++..+ +..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 4458899999999999999999998 443
No 351
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.07 E-value=0.079 Score=64.80 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+++...+-|+||+|+|||||++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4556678999999999999999998843
No 352
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.04 E-value=0.034 Score=54.80 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++++++..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445568899999999999999999865
No 353
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.00 E-value=0.035 Score=54.82 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++++++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999854
No 354
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=92.88 E-value=0.42 Score=47.46 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=22.8
Q ss_pred eeEEecCCCChHHHHHHHHHHhc----CCCeEEeec
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el----g~pfi~is~ 398 (597)
..+|.+|+|+|||.++-+++... +.+.+.+..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~P 165 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECS
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 36789999999999997776642 225555543
No 355
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.88 E-value=0.39 Score=48.69 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=32.2
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhh-----hCCCCCCeeEEecCCCChHHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~-----lg~~~p~gVLL~GPPGTGKT~LA 382 (597)
..+|+++.-.++..+.|... .+..|..++. +-..+++.+++.+|+|+|||+..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 35788876666665555442 1333332222 11223578999999999999764
No 356
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.78 E-value=0.055 Score=57.98 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=46.7
Q ss_pred ceEEEecCCCCCchhHHH--HHhCCceeccCCCC---------------------------CcChHHHHHHHHHHHHHHH
Q 007591 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+.+|+++.+ ++++.++|+.|+.. +.||.+++|..+|..|.+.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999874 89999999988752 6799999999999999888
Q ss_pred Hhh
Q 007591 293 GLL 295 (597)
Q Consensus 293 ~~~ 295 (597)
++.
T Consensus 369 Air 371 (405)
T 4b4t_J 369 ALR 371 (405)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 357
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.78 E-value=0.16 Score=52.81 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||||+|||||.+++++.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344558899999999999999999754
No 358
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.73 E-value=0.045 Score=53.46 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344558899999999999999999865
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.69 E-value=0.17 Score=46.35 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.9
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..|+|.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999888754
No 360
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.67 E-value=0.75 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=18.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+.+++.+|+|+|||..+-..+-+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999886665543
No 361
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.64 E-value=0.06 Score=53.32 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+ .-+.|.||.|+|||||++++++..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 344 568899999999999999999854
No 362
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.60 E-value=0.048 Score=54.67 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999999865
No 363
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.59 E-value=0.13 Score=55.75 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=20.4
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3445788999999999999888754
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.58 E-value=0.066 Score=50.51 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=25.4
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEee
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is 397 (597)
.+.+.|.|++|+|||+++..++.++ +..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3468899999999999999998865 44544443
No 365
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.49 E-value=0.072 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.4
Q ss_pred eeEEecCCCChHHHHHHHHHHhcC
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEAE 390 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg 390 (597)
-.+|+||.|+|||+|++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 567999999999999999988764
No 366
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.48 E-value=0.63 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=18.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+.+++.+|+|+|||..+-..+-+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999887655543
No 367
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.42 E-value=0.062 Score=54.04 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.2
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..+..-+.|.||.|+|||||++.+++.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345556889999999999999999995
No 368
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.41 E-value=0.042 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999999853
No 369
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.40 E-value=0.4 Score=44.95 Aligned_cols=24 Identities=46% Similarity=0.574 Sum_probs=20.9
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...|+|.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999874
No 370
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.39 E-value=0.045 Score=53.05 Aligned_cols=23 Identities=43% Similarity=0.430 Sum_probs=20.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.-+.|.||.|+|||||++++++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999974
No 371
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.38 E-value=0.4 Score=57.14 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.3
Q ss_pred CCeeEEecCCCChHHHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAI 385 (597)
...++|+||.|+|||++.|.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 467899999999999999999
No 372
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.38 E-value=0.077 Score=50.14 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....|+|.|++|+|||+|+.++++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999999864
No 373
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.35 E-value=0.33 Score=47.22 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=25.7
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc--CCCeEEee
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el--g~pfi~is 397 (597)
....+++.|.+|+|||+++..+|..+ +..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568889999999999999998654 44454444
No 374
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.33 E-value=0.048 Score=54.60 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++++++..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3455568999999999999999999854
No 375
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.32 E-value=0.57 Score=48.17 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=31.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhh-----CCCCCCeeEEecCCCChHHHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRL-----GARPPRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~l-----g~~~p~gVLL~GPPGTGKT~LAk 383 (597)
..+|+++.-.++..+.|.+. .+..|..++.. -...++.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 34677776666655555542 12222222211 11235789999999999998753
No 376
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.28 E-value=0.083 Score=47.14 Aligned_cols=21 Identities=52% Similarity=0.909 Sum_probs=19.3
Q ss_pred eeEEecCCCChHHHHHHHHHH
Q 007591 367 GVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~ 387 (597)
.|+|.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999965
No 377
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.22 E-value=0.044 Score=54.70 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344558899999999999999999854
No 378
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.22 E-value=0.069 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.5
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.+.|.||+|+|||+|++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999985
No 379
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.21 E-value=0.24 Score=54.99 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=31.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEeecchhHH
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~se~~~ 403 (597)
+..|+|.|++|+|||++|+.++..+ |.++..+++..+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568899999999999999999875 56777777665543
No 380
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.19 E-value=0.051 Score=54.81 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.6
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++.+++..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999854
No 381
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.18 E-value=0.38 Score=51.41 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=31.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhh-----hCCCCCCeeEEecCCCChHHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIR-----LGARPPRGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~-----lg~~~p~gVLL~GPPGTGKT~LA 382 (597)
..+|+++.-.++..+.|.+. .+..|..++. +-...++.+|+.||+|+|||+.+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 34677776666665555441 1222222221 11124578999999999999874
No 382
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.17 E-value=0.065 Score=51.16 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCe
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pf 393 (597)
.+++||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999999874 4433
No 383
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.15 E-value=0.059 Score=54.20 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=23.6
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++++++..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3445568899999999999999999864
No 384
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.14 E-value=0.074 Score=52.82 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.4
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.+..-+.|.||.|+|||||++++++.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456889999999999999999995
No 385
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.12 E-value=0.068 Score=55.80 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCC
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~p 392 (597)
...+.|.||+|+|||||++.+++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999986544
No 386
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.09 E-value=0.059 Score=52.83 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||.+++++..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568899999999999999999864
No 387
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.08 E-value=0.069 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+.|.||+|+|||+|++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 388
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.08 E-value=0.065 Score=52.25 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344558899999999999999999864
No 389
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.07 E-value=0.075 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.2
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.+++.|++|+|||+|++++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 390
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.00 E-value=0.059 Score=56.84 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=22.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||+|+|||||.++||+-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344458899999999999999999853
No 391
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.00 E-value=0.053 Score=53.87 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568899999999999999999854
No 392
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.99 E-value=0.048 Score=53.87 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=22.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||.+++++..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999864
No 393
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.99 E-value=0.068 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 394
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.96 E-value=0.3 Score=52.23 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.....++|.||+|+|||+|++.+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345569999999999999999998753
No 395
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.94 E-value=0.072 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 396
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.90 E-value=0.066 Score=53.60 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++++++..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445568899999999999999999854
No 397
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.89 E-value=0.092 Score=57.92 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=24.3
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCC
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~ 391 (597)
+..|.|.|.+|+||||+|+++|..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999874
No 398
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.88 E-value=0.051 Score=55.08 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344558899999999999999999854
No 399
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.88 E-value=0.065 Score=53.76 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=23.2
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++++++-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445568899999999999999999853
No 400
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.84 E-value=0.13 Score=50.03 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=25.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc---CCCeEEee
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is 397 (597)
+.-|.|.|++|+||||+++.++..+ +.+++...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 3447788999999999999998866 56665543
No 401
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.82 E-value=0.091 Score=51.31 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=29.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHhcCCCeEEeecchhHHHhh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~elg~pfi~is~se~~~~~v 406 (597)
..|-|+|..|||||++++.++. +|.|++.. ..+....+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vida--D~ia~~l~ 47 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDT--DLIAHRIT 47 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEH--HHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEEC--cHHHHHHh
Confidence 4688999999999999999987 89888654 44443333
No 402
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.80 E-value=0.25 Score=54.62 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=30.6
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 334 V~G~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+...+.+.+.+..+++.+.. ..+++|+.+|+|+|||..+-.++..
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~----------~~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQ----------GKKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHT----------TCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhc----------CCCceEEEecCCCChHHHHHHHHHH
Confidence 34456666677776655432 2246899999999999998777654
No 403
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.77 E-value=0.32 Score=58.40 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=22.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc---CCCeEEeec
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is~ 398 (597)
+.+|++||+|+|||+.+-..+-+. +...+++..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 469999999999999876544332 444454443
No 404
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.73 E-value=0.22 Score=45.99 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.|+|.|++|+|||+|++++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 405
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.73 E-value=0.076 Score=52.93 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++.+++..
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345568899999999999999999865
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.72 E-value=0.072 Score=56.20 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||+|+|||||.+++|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344458899999999999999999853
No 407
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.72 E-value=0.063 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||+|+|||||.+++|+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344568899999999999999999853
No 408
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.70 E-value=0.072 Score=56.15 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||+|+|||||.+++|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344558899999999999999999853
No 409
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.68 E-value=0.28 Score=50.75 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.....+.|.|+||+|||++++++++.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999998754
No 410
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.66 E-value=0.074 Score=56.56 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=22.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||+|+|||||.++||+-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344558899999999999999999853
No 411
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.63 E-value=0.075 Score=56.29 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||+|+|||||.+++|+-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344558899999999999999999843
No 412
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.60 E-value=0.075 Score=53.47 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.9
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345568899999999999999999854
No 413
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.60 E-value=0.12 Score=46.77 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.+..|+|.|++|+|||+|++++.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3556999999999999999999863
No 414
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.52 E-value=0.061 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
+.+.|.||+|+|||||++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999875
No 415
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.51 E-value=0.065 Score=54.32 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=22.8
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||++++++..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999999854
No 416
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=91.50 E-value=0.68 Score=44.66 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.9
Q ss_pred CeeEEecCCCChHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLA 382 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LA 382 (597)
+.+++.+|+|+|||+.+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
No 417
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.48 E-value=0.14 Score=48.44 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..++|.|++|+|||+|+..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 418
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.46 E-value=0.1 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 419
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.44 E-value=0.68 Score=43.42 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.2
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|+|.|++|+|||+|++++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 420
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.40 E-value=0.069 Score=56.22 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
...-+.|.||+|+|||||.+++|+-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999853
No 421
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.40 E-value=0.085 Score=52.62 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.8
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.+..-+.|.||.|+|||||.+++++..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999854
No 422
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.38 E-value=0.067 Score=49.36 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
....|+|.|++|+|||+|+.++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557999999999999999999864
No 423
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.37 E-value=0.65 Score=56.02 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEecCCCChHHHHHHHHHH---hcCCCeEEeec
Q 007591 337 VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG---EAEVPFISCSA 398 (597)
Q Consensus 337 ~de~k~~L~eiv~~l~~p~~~~~lg~~~p~gVLL~GPPGTGKT~LAkAIA~---elg~pfi~is~ 398 (597)
.+.+++.+..++..+.. ..|..+|++||+|+|||.+|-..+- ..+..++.+..
T Consensus 605 t~~Q~~ai~~il~~~~~---------g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvP 660 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQ---------PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 660 (1151)
T ss_dssp CHHHHHHHHHHHHHHHS---------SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred CHHHHHHHHHHHHHHhc---------CCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEec
Confidence 45555666666554322 2355799999999999987653332 23445554443
No 424
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.36 E-value=0.099 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 425
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.33 E-value=0.078 Score=57.75 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=46.3
Q ss_pred ceEEEecCCCCCchhHHH--HHhCCceeccCCCC---------------------------CcChHHHHHHHHHHHHHHH
Q 007591 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+.+|+++.+ ++++.++|+.|+.. +.||.+++|..+|..|.+.
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~ 429 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMF 429 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999875 89999999888742 6799999999999999888
Q ss_pred Hhh
Q 007591 293 GLL 295 (597)
Q Consensus 293 ~~~ 295 (597)
++.
T Consensus 430 Air 432 (467)
T 4b4t_H 430 AIR 432 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 426
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.26 E-value=0.077 Score=49.02 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.0
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.++|.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 427
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.26 E-value=0.091 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.1
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 428
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.24 E-value=0.11 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 429
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.22 E-value=0.053 Score=53.40 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=20.6
Q ss_pred eeEEecCCCChHHH-HHHHHHH--hcCCCeEEee
Q 007591 367 GVLLVGLPGTGKTL-LAKAVAG--EAEVPFISCS 397 (597)
Q Consensus 367 gVLL~GPPGTGKT~-LAkAIA~--elg~pfi~is 397 (597)
-.+++||.|+|||+ |.+.+-+ +.+..++.+.
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 36789999999999 5555432 3355555543
No 430
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.22 E-value=0.11 Score=46.17 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.1
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 431
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.18 E-value=0.11 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.2
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
-.|++.|++|+|||+|++++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 359999999999999999998753
No 432
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.18 E-value=0.15 Score=50.25 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=23.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc-------CCCeEEee
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCS 397 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el-------g~pfi~is 397 (597)
+.-|.|.||+|+||||+++.++..+ +.+++...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 3447788999999999999999876 66665543
No 433
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.15 E-value=0.097 Score=47.04 Aligned_cols=23 Identities=52% Similarity=0.736 Sum_probs=20.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35999999999999999999764
No 434
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.13 E-value=0.076 Score=56.19 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
...-+.|.||+|+|||||.+++|+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 44458899999999999999999853
No 435
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.12 E-value=0.66 Score=50.41 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.2
Q ss_pred CCeeEEecCCCChHHHHHH
Q 007591 365 PRGVLLVGLPGTGKTLLAK 383 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAk 383 (597)
++.+++.+|+|+|||+.+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4679999999999998744
No 436
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.09 E-value=0.11 Score=51.46 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCC
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVP 392 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~p 392 (597)
.+.-|.|.|++|+||||+++.++..+ +.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 34568889999999999999998865 555
No 437
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.09 E-value=0.3 Score=52.18 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.0
Q ss_pred CeeEEecCCCChHHHHH-HHHH
Q 007591 366 RGVLLVGLPGTGKTLLA-KAVA 386 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LA-kAIA 386 (597)
+.+|+.||+|+|||+.+ -++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999975 4443
No 438
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.04 E-value=0.065 Score=56.31 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||+|+|||||.+++|+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999999853
No 439
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.02 E-value=0.11 Score=58.54 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=18.3
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.+++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999987776553
No 440
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.02 E-value=0.19 Score=49.08 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=25.7
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeEE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (597)
+.-|.|.|++|+||||+++.++..++.+...
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~ 35 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKL 35 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceE
Confidence 4567889999999999999999998764433
No 441
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.98 E-value=0.12 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.6
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 442
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.91 E-value=0.11 Score=46.25 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 443
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.90 E-value=0.13 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...|++.|++|+|||+|+.++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999764
No 444
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.87 E-value=0.12 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999875
No 445
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.85 E-value=0.39 Score=57.72 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.3
Q ss_pred CeeEEecCCCChHHHHHHHH
Q 007591 366 RGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAI 385 (597)
+.+|+.+|+|+|||+++-..
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHH
Confidence 46999999999999955443
No 446
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.83 E-value=0.13 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...|++.|++|+|||+|++++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 447
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.81 E-value=0.092 Score=55.94 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.0
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHh
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..+..-+.|.||+|+|||||.++|++.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 345556899999999999999999984
No 448
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.79 E-value=0.26 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=21.4
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+..|+|.|.||+|||+|+.++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 456999999999999999999874
No 449
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.79 E-value=0.12 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.1
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 450
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.78 E-value=0.092 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.0
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..-+.|.||.|+|||||.+++++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458899999999999999999864
No 451
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.74 E-value=0.11 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..++|.|++|+|||+|++++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 452
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.71 E-value=0.1 Score=47.78 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.3
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...+.|.|+||+|||+|.+++++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999875
No 453
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=90.68 E-value=1.2 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.2
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
+.+|++||+|+|||..+-.++..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999998766654
No 454
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.67 E-value=0.13 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
-.|+|.|++|+|||+|++++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 455
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.61 E-value=0.14 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 456
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.60 E-value=0.058 Score=50.62 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=22.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
......+.|.|++|+|||+|.+++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444568999999999999999997643
No 457
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.59 E-value=0.097 Score=53.41 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
..+..-+.|.||.|+|||||++++++..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3445568899999999999999999854
No 458
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.57 E-value=0.12 Score=46.32 Aligned_cols=21 Identities=48% Similarity=0.737 Sum_probs=19.2
Q ss_pred eeEEecCCCChHHHHHHHHHH
Q 007591 367 GVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~ 387 (597)
.|+|.|++|+|||+|++++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 459
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.57 E-value=0.14 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 460
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.52 E-value=0.14 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.2
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 461
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.47 E-value=0.12 Score=56.21 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=23.9
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.....-+.|.||.|+|||||+|.+++..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4455669999999999999999999854
No 462
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.43 E-value=0.15 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
....|+|.|++|+|||+|++++.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999874
No 463
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.42 E-value=0.15 Score=46.62 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.-.|+|.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999875
No 464
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.36 E-value=0.74 Score=48.84 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=31.1
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhHHhhhC---CCCCCeeEEecCCCChHHHH
Q 007591 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVGLPGTGKTLL 381 (597)
Q Consensus 328 ~vtf~dV~G~de~k~~L~eiv~~l~~p~~~~~lg---~~~p~gVLL~GPPGTGKT~L 381 (597)
-.+|+++.-.+...+.|.+. .+..|..++... ....+.+++.+|+|+|||+.
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 45788876555555555432 133343333221 11346799999999999984
No 465
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.36 E-value=0.15 Score=45.34 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.9
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|++++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 466
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.21 E-value=0.75 Score=56.07 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.3
Q ss_pred CCCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
.++...+.|+||+|+|||||++.+++..
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566679999999999999999999865
No 467
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.18 E-value=0.14 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.5
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 468
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.18 E-value=0.15 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
-.|+|.|++|+|||+|+.++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
No 469
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.16 E-value=0.15 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...|+|.|++|+|||+|+.++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999864
No 470
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.14 E-value=0.16 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.9
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 471
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.12 E-value=0.083 Score=57.05 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=46.3
Q ss_pred cceEEEecCCCCCchhHH--HHHhCCceeccCCCC---------------------------CcChHHHHHHHHHHHHHH
Q 007591 241 KRIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVL 291 (597)
Q Consensus 241 ~~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l 291 (597)
..++.|||+|+.+|+++. ++++..++|+.|+.. +.||.+++|..+|..|.+
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~ 401 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGL 401 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 347899999999999886 489999999888742 678999999999999988
Q ss_pred HHhh
Q 007591 292 AGLL 295 (597)
Q Consensus 292 ~~~~ 295 (597)
.++.
T Consensus 402 ~Air 405 (437)
T 4b4t_I 402 LALR 405 (437)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 472
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.04 E-value=0.45 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.5
Q ss_pred CCCCCeeEEecCCCChHHHHHHHH
Q 007591 362 ARPPRGVLLVGLPGTGKTLLAKAV 385 (597)
Q Consensus 362 ~~~p~gVLL~GPPGTGKT~LAkAI 385 (597)
+.+..-+.|.||+|+|||||++++
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTT
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHH
Confidence 344556889999999999999764
No 473
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.04 E-value=0.15 Score=45.99 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.9
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 474
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.98 E-value=0.27 Score=46.64 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhc
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
...++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468889999999999999999875
No 475
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.95 E-value=0.25 Score=51.76 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc---CCCeEEee
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCS 397 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el---g~pfi~is 397 (597)
...++++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34579999999999999999998753 44555444
No 476
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.94 E-value=0.17 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999874
No 477
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.88 E-value=0.16 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|+.++++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 478
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.87 E-value=0.16 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 479
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=89.83 E-value=1.8 Score=49.70 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=23.9
Q ss_pred CeeEEecCCCChHHHHHHHHHHhc--------CCCeEEeec
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSA 398 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~el--------g~pfi~is~ 398 (597)
+++++.+|+|+|||..+-..+-+. +..++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 569999999999999876665433 555555543
No 480
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.77 E-value=0.17 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
No 481
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.71 E-value=0.096 Score=56.61 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=46.9
Q ss_pred ceEEEecCCCCCchhHH--HHHhCCceeccCCCC---------------------------CcChHHHHHHHHHHHHHHH
Q 007591 242 RIVYTTTRPSDIKTPYE--KMLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (597)
Q Consensus 242 ~~~~~t~~~~~~~~~~~--~~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~l~ 292 (597)
.++.+||+|+.+|+++. +++++.++|+.|+.. +.||.+++|..+|..|.+.
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMI 401 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999884 589999999988752 6799999999999999988
Q ss_pred Hhhh
Q 007591 293 GLLH 296 (597)
Q Consensus 293 ~~~~ 296 (597)
++..
T Consensus 402 a~r~ 405 (434)
T 4b4t_M 402 ALRN 405 (434)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8653
No 482
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.62 E-value=0.18 Score=49.57 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=25.0
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHhc----CCCeEE
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFIS 395 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~el----g~pfi~ 395 (597)
.+.-|.|.|++|+|||++++.++..+ +.+++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 34557788999999999999999865 335555
No 483
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.62 E-value=0.16 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...|++.|++|+|||+|++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999875
No 484
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.60 E-value=0.12 Score=50.11 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHhcCCCeE
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~elg~pfi 394 (597)
+.-+.|.||.|+||||+++.+++. +-.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 445778999999999999999987 43333
No 485
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.59 E-value=0.16 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 486
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=89.51 E-value=0.5 Score=53.80 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=18.6
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..+.+++.||+|+|||+.|-..+.+
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~~ 178 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYFS 178 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467999999999999965444333
No 487
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.50 E-value=0.16 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 488
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.48 E-value=0.19 Score=45.38 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...|+|.|++|+|||+|++++.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 489
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.47 E-value=0.18 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.9
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|+|.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 490
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.47 E-value=0.22 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCeeEEecCCCChHHHHHHHHHHh
Q 007591 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 365 p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
...|++.|++|+|||+|++++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999864
No 491
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.46 E-value=0.15 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=22.8
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHHhc
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~el 389 (597)
....-+.|.||+|+|||||++++++-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 444568899999999999999999853
No 492
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.45 E-value=0.15 Score=46.62 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.8
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
....|++.|++|+|||+|++++.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999999864
No 493
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.41 E-value=0.2 Score=46.69 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
.....|++.|++|+|||+|++++.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455699999999999999999965
No 494
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.40 E-value=0.18 Score=46.94 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCeeEEecCCCChHHHHHHHHHHh
Q 007591 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 364 ~p~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
....|+|.|++|+|||+|++++.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 495
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.38 E-value=0.17 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCCCeeEEecCCCChHHHHHHHHHH
Q 007591 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (597)
Q Consensus 363 ~~p~gVLL~GPPGTGKT~LAkAIA~ 387 (597)
..+..|++.|++|+|||+|+.++.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999874
No 496
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.34 E-value=0.19 Score=46.77 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|++.|++|+|||+|++++.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 497
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.30 E-value=0.2 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred CeeEEecCCCChHHHHHHHHHHh
Q 007591 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 366 ~gVLL~GPPGTGKT~LAkAIA~e 388 (597)
..|+|.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 498
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.29 E-value=0.2 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.1
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|++++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 499
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.26 E-value=0.21 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.5
Q ss_pred eeEEecCCCChHHHHHHHHHHhc
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (597)
-++|.|+.|+|||||++.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999754
No 500
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.26 E-value=0.15 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.1
Q ss_pred eeEEecCCCChHHHHHHHHHHh
Q 007591 367 GVLLVGLPGTGKTLLAKAVAGE 388 (597)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~e 388 (597)
.|++.|++|+|||+|++++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999874
Done!