BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007592
         (597 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GYX9|WDL1_ARATH Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=2 SV=1
          Length = 286

 Score = 63.9 bits (154), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 33/118 (27%)

Query: 414 SFRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKD 473
           +FRS +R  KRKE++QKLEEKN+A EAE+ +LE+R KD+ +  +K+++++  F+AK    
Sbjct: 127 TFRSAQRAEKRKEYYQKLEEKNQALEAERNELEQRQKDEQEAALKQLRKNLKFKAKP--- 183

Query: 474 LCCGSHLPNAHMKKEQAEHDIKKLRQSTGFKSISSANCPLTTKQIKKRPLCQPCSPKL 531
                 +PN + +   A+ ++KKL                        PL +P SPKL
Sbjct: 184 ------VPNFYYEAPPAKPELKKL------------------------PLTRPKSPKL 211


>sp|Q84ZT9|WVD2_ARATH Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
          Length = 202

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 33/132 (25%)

Query: 415 FRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDL 474
           FRS +R  KRKE++QKLEEK++A EAE+ +LE+R K++ +  IK+++++  F+A      
Sbjct: 89  FRSAQRAEKRKEYYQKLEEKHQALEAERIELEQRQKEEQEAAIKQLRKNLKFKA------ 142

Query: 475 CCGSHLPNAHMKKEQAEHDIKKLRQSTGFKSISSANCPLTTKQIKKRPLCQPCSPKLGGK 534
              + +P+ + ++                        P    ++KK PL +P SPKL   
Sbjct: 143 ---NPVPDFYYQR------------------------PPVKPELKKFPLTRPKSPKLNLS 175

Query: 535 PRPTPTVVLDSS 546
            R + +  + SS
Sbjct: 176 RRKSCSDAITSS 187


>sp|Q58080|Y666_METJA Putative molybdopterin biosynthesis protein MJ0666
           OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
           DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0666
           PE=3 SV=1
          Length = 398

 Score = 33.9 bits (76), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 32/230 (13%)

Query: 41  SESLAWEKWSTF-SHNRYLEEVERFSKPGTVA--EKKAYFEAHYKKKAAMKAAAAVEEAN 97
           +E + +EK S +   N+ ++EV+       ++  + KA  +  Y  KAAM   A + E  
Sbjct: 13  AEKIVFEKLSEYLDENKKVKEVDIVEALNRISAEDIKAPIDLPYFNKAAMDGYAVIAEDT 72

Query: 98  AAANEIPGLKTTTEILDNSPTDTDSAKENRHMAIKEQKEQRFSHTCADSHMDTVTADEIS 157
             A+E     T   IL+ +  D  +  E + +         F+      + + V   E  
Sbjct: 73  FGASE-----TNPIILNLADGDEITYGEAKKI---------FTGDKLPKNANAVVMKEFC 118

Query: 158 HVVADDFL---KSESPNAEVAPTEANVCYSINTEYDLGDADLKKGEAVIEYAVNVENPTQ 214
           + V DDF+   K+  PN  V+         I  +   GD  LKKGE +  Y +N+     
Sbjct: 119 NEV-DDFVEVYKTVHPNENVS--------RIGEDVKKGDVVLKKGEIINPYHLNMLASL- 168

Query: 215 DDNLKQLQNPDCHYKIEASSLERMPNKEVADEENSASSSKKKLASCSSKL 264
              +K+++  D  + I ++  E +   E+ D E   S    K+ + +S +
Sbjct: 169 --GIKKIKVYDLSFGIISTGDELINLDEIRDIEEDISKLDGKIINSNSYM 216


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.122    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,535,128
Number of Sequences: 539616
Number of extensions: 8546207
Number of successful extensions: 31300
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 443
Number of HSP's that attempted gapping in prelim test: 30227
Number of HSP's gapped (non-prelim): 1208
length of query: 597
length of database: 191,569,459
effective HSP length: 123
effective length of query: 474
effective length of database: 125,196,691
effective search space: 59343231534
effective search space used: 59343231534
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)