Query 007592
Match_columns 597
No_of_seqs 100 out of 129
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 12:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06886 TPX2: Targeting prote 99.7 7.3E-18 1.6E-22 135.0 6.9 57 415-471 1-57 (57)
2 PF10595 UPF0564: Uncharacteri 56.1 16 0.00034 38.6 4.5 59 407-478 3-61 (356)
3 KOG2891 Surface glycoprotein [ 47.9 27 0.00058 37.6 4.6 47 412-461 381-428 (445)
4 PF11690 DUF3287: Protein of u 36.4 1E+02 0.0022 28.8 5.9 46 414-460 31-77 (109)
5 PRK13922 rod shape-determining 24.2 1.5E+02 0.0032 29.9 5.4 44 428-471 71-116 (276)
6 PF12214 TPX2_importin: Cell c 23.8 65 0.0014 32.0 2.7 24 514-537 110-133 (176)
7 PF05178 Kri1: KRI1-like famil 23.5 1.1E+02 0.0025 27.7 3.9 43 444-508 2-44 (101)
8 KOG3859 Septins (P-loop GTPase 21.7 52 0.0011 35.8 1.7 64 411-479 316-379 (406)
9 PF07716 bZIP_2: Basic region 21.0 2.1E+02 0.0046 22.5 4.6 27 422-448 21-47 (54)
10 TIGR00219 mreC rod shape-deter 20.0 2E+02 0.0043 30.0 5.4 42 429-470 69-113 (283)
No 1
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=99.72 E-value=7.3e-18 Score=135.05 Aligned_cols=57 Identities=42% Similarity=0.622 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccC
Q 007592 415 FRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQN 471 (597)
Q Consensus 415 frsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPm 471 (597)
|+||+||++|+|||+||+||.+++|+++.+++++++++++++|++|||+|+|||+||
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm 57 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM 57 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999998
No 2
>PF10595 UPF0564: Uncharacterised protein family UPF0564; InterPro: IPR019579 This entry represents proteins with no known function.
Probab=56.06 E-value=16 Score=38.64 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=33.4
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccCCCcccCC
Q 007592 407 PCITSPFSFRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGS 478 (597)
Q Consensus 407 ~~~~s~f~frsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPmPsFY~e~ 478 (597)
.|+|-+|.| +.|-+++++--.+- ....|.+...++.+ +.|++.. --|+|+|+|.+=..|
T Consensus 3 iTVP~PF~m--t~RE~~kk~~~~~~---~~~~e~~~~~~~~~---~ee~e~~-----k~FrA~pVP~~v~lP 61 (356)
T PF10595_consen 3 ITVPKPFQM--TLREEEKKEKASKS---QSDLEQEKKELKKQ---EEEAECK-----KKFRANPVPAHVYLP 61 (356)
T ss_pred cCCCCCCCc--cHHHHhccchhhhh---HHHHHHHHHHHHHH---HHHHHhc-----cCCCCCCCCchhccc
Confidence 477788777 77877777511111 11333444444433 2344442 259999999965544
No 3
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=47.93 E-value=27 Score=37.64 Aligned_cols=47 Identities=34% Similarity=0.461 Sum_probs=35.6
Q ss_pred CCcc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhh
Q 007592 412 PFSF-RSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQ 461 (597)
Q Consensus 412 ~f~f-rsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLR 461 (597)
-|-| +-+.|-++|+. |-|||++|.+.-..+||.+.++++.+-+--|+
T Consensus 381 kf~fekieareerrkq---keeeklk~e~qkikeleek~~eeedal~~all 428 (445)
T KOG2891|consen 381 KFEFEKIEAREERRKQ---KEEEKLKAEEQKIKELEEKIKEEEDALLLALL 428 (445)
T ss_pred HHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 55667777775 88999999999999999999988876554433
No 4
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=36.37 E-value=1e+02 Score=28.82 Aligned_cols=46 Identities=11% Similarity=0.333 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-HHHHHHHHh
Q 007592 414 SFRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKD-KAQCDIKKV 460 (597)
Q Consensus 414 ~frsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKE-e~EaeIKkL 460 (597)
.| +++..+....|++||+.++++.-.|+.+|..|-+. .-|-+++.|
T Consensus 31 ~~-~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~L 77 (109)
T PF11690_consen 31 HL-PSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRAL 77 (109)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 44555566689999999999999999999888665 344444444
No 5
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.17 E-value=1.5e+02 Score=29.87 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=33.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhh--hHHHHHHHHhhhccccccccC
Q 007592 428 FQKLEEKNKAKEAEKGQLERRSK--DKAQCDIKKVQQSTSFEAKQN 471 (597)
Q Consensus 428 y~KLEEK~~AkE~EK~qlqaKsK--Ee~EaeIKkLRKSL~FKAtPm 471 (597)
|..|.+.+...++|..+|+++.. ++-++|..+||+-|.++...-
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~ 116 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLD 116 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 55677777777777777777655 566778899999999987643
No 6
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=23.81 E-value=65 Score=32.05 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred cccccccCCCCCCCCCCCCCCCCC
Q 007592 514 TTKQIKKRPLCQPCSPKLGGKPRP 537 (597)
Q Consensus 514 ~~~~~kk~p~t~p~spklg~~~~~ 537 (597)
...+++-.++|.|.||++-.+.+-
T Consensus 110 ~~p~~~~~~~t~p~sp~~~~k~r~ 133 (176)
T PF12214_consen 110 GVPEKKVLPVTVPKSPAFALKNRV 133 (176)
T ss_pred CCccccccccCCCCChhhhccccc
Confidence 456778899999999999877653
No 7
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=23.50 E-value=1.1e+02 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.487 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHhhhccccccccCCCcccCCCCCcccchhhhhHHHHHhhhhccCcccccC
Q 007592 444 QLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSHLPNAHMKKEQAEHDIKKLRQSTGFKSISS 508 (597)
Q Consensus 444 qlqaKsKEe~EaeIKkLRKSL~FKAtPmPsFY~e~~~p~~h~k~e~~~~~~~~~~~~~~~~~~~~ 508 (597)
+..+.-+.+.+++|++|+. .|.+..+.-|++|+..+|...+..
T Consensus 2 eRK~~Ek~~k~eElkrlK~----------------------lK~~Ei~~kl~kik~~~G~~~~~~ 44 (101)
T PF05178_consen 2 ERKEEEKQEKEEELKRLKN----------------------LKRKEIEEKLEKIKEVAGLEDIDL 44 (101)
T ss_pred cHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHhCCCccCC
No 8
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.68 E-value=52 Score=35.81 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=44.2
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccCCCcccCCC
Q 007592 411 SPFSFRSEERVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSH 479 (597)
Q Consensus 411 s~f~frsdERAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPmPsFY~e~~ 479 (597)
.+|+|- +-=+.||.||+.- ++.+|+|..|+=-+.-.++|+++|.--+.|-.|-..+---|++..
T Consensus 316 ~p~s~q-et~eaKr~e~~~e----~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk 379 (406)
T KOG3859|consen 316 KPFSLQ-ETYEAKRNEFLGE----LQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEK 379 (406)
T ss_pred CCccHH-HHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456663 3346788898765 456788877776666677888888888888777666655555554
No 9
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.03 E-value=2.1e+02 Score=22.54 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007592 422 AKRKEFFQKLEEKNKAKEAEKGQLERR 448 (597)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaK 448 (597)
++++++...||..+...+.+..+|+.+
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999998888653
No 10
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.01 E-value=2e+02 Score=29.97 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=28.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHhh---hHHHHHHHHhhhcccccccc
Q 007592 429 QKLEEKNKAKEAEKGQLERRSK---DKAQCDIKKVQQSTSFEAKQ 470 (597)
Q Consensus 429 ~KLEEK~~AkE~EK~qlqaKsK---Ee~EaeIKkLRKSL~FKAtP 470 (597)
..|.+.+.....|..+++++.+ ++.++|..+||+-|.|+...
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 3466666666666555533332 34778999999999999764
Done!