Query 007592
Match_columns 597
No_of_seqs 100 out of 129
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 05:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 22.8 1.3E+02 0.0046 25.1 5.2 37 430-468 31-68 (72)
2 3s9g_A Protein hexim1; cyclin 22.2 1.1E+02 0.0038 27.2 4.9 35 428-462 39-79 (104)
3 4e29_A Chimeric WZZB chain len 21.9 1.4E+02 0.0047 29.6 6.0 46 420-465 115-160 (248)
4 3vp9_A General transcriptional 17.3 2.6E+02 0.009 24.3 6.1 61 409-469 19-89 (92)
5 1t2k_D Cyclic-AMP-dependent tr 17.0 2.5E+02 0.0084 21.7 5.4 40 422-462 18-57 (61)
6 1jnm_A Proto-oncogene C-JUN; B 16.7 2.3E+02 0.0078 22.0 5.1 41 422-463 18-58 (62)
7 3qh9_A Liprin-beta-2; coiled-c 16.1 1.6E+02 0.0056 25.2 4.4 47 418-464 15-77 (81)
8 2ve7_A Kinetochore protein HEC 11.7 1.6E+02 0.0055 29.5 3.7 73 421-506 166-238 (315)
9 3b8o_A Lipopolysaccharide bios 10.2 4.5E+02 0.015 25.5 6.2 45 422-466 136-180 (265)
10 1j1d_B Troponin T, TNT; THIN f 9.8 5.6E+02 0.019 22.5 6.1 36 426-462 49-84 (106)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.80 E-value=1.3e+02 Score=25.13 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=25.8
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhcc-cccc
Q 007592 430 KLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQST-SFEA 468 (597)
Q Consensus 430 KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL-~FKA 468 (597)
|.|| +.++++-...++.+. .+++++|+.||..| .|+.
T Consensus 31 K~eE-Lr~kd~~I~eLEk~L-~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 31 KIEE-LRQRDALIDELELEL-DQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 3444 778887777777654 45678999999877 4554
No 2
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.21 E-value=1.1e+02 Score=27.23 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=28.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhh------hHHHHHHHHhhh
Q 007592 428 FQKLEEKNKAKEAEKGQLERRSK------DKAQCDIKKVQQ 462 (597)
Q Consensus 428 y~KLEEK~~AkE~EK~qlqaKsK------Ee~EaeIKkLRK 462 (597)
|..||.++.-.|.|-++|+..++ ++-+++|.+||-
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 77899999999988888887655 567788888874
No 3
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=21.91 E-value=1.4e+02 Score=29.61 Aligned_cols=46 Identities=7% Similarity=0.141 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccc
Q 007592 420 RVAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTS 465 (597)
Q Consensus 420 RAeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~ 465 (597)
+.+--.+|...++.|.+.++.+..+++...+.+.+..|.+|+..|.
T Consensus 115 ~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~ 160 (248)
T 4e29_A 115 NQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALR 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456668889999999999999999999999999999999998654
No 4
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=17.28 E-value=2.6e+02 Score=24.25 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=35.9
Q ss_pred CCCCCccchHH----HHHHHHHHHHHHHHHhhhHHH------HHHHHHHHhhhHHHHHHHHhhhccccccc
Q 007592 409 ITSPFSFRSEE----RVAKRKEFFQKLEEKNKAKEA------EKGQLERRSKDKAQCDIKKVQQSTSFEAK 469 (597)
Q Consensus 409 ~~s~f~frsdE----RAeKRKEFy~KLEEK~~AkE~------EK~qlqaKsKEe~EaeIKkLRKSL~FKAt 469 (597)
+...|..-+.+ |..+.++|-.|+.--+...+. |..+.+.+-|+.=|+||.+||..|--+..
T Consensus 19 ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 19 IRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp TTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455544444 555556777776554444332 22234456788889999999998865543
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=17.01 E-value=2.5e+02 Score=21.70 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007592 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQ 462 (597)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRK 462 (597)
+++++....||.+....+.+...|+... ..-..++..|++
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i-~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEV-TLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5677888999999999999999998853 344445666665
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=16.68 E-value=2.3e+02 Score=22.02 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 007592 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQS 463 (597)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKS 463 (597)
+++++....||.+....+.+...|+... ..-..++.+|++-
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v-~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTA-NMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5667888899999999999999988753 3334456666653
No 7
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=16.10 E-value=1.6e+02 Score=25.20 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHhh-------------hHHHHHHHHhhhcc
Q 007592 418 EERVAKRKEFFQK---LEEKNKAKEAEKGQLERRSK-------------DKAQCDIKKVQQST 464 (597)
Q Consensus 418 dERAeKRKEFy~K---LEEK~~AkE~EK~qlqaKsK-------------Ee~EaeIKkLRKSL 464 (597)
++|--+=..+++- |--|...+|-|+.|.+.|.| +.++++|+.|.-.|
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444333344443 23355567788888887766 44556666665444
No 8
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=11.75 E-value=1.6e+02 Score=29.53 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccccccccCCCcccCCCCCcccchhhhhHHHHHhhhhc
Q 007592 421 VAKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSFEAKQNKDLCCGSHLPNAHMKKEQAEHDIKKLRQS 500 (597)
Q Consensus 421 AeKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~FKAtPmPsFY~e~~~p~~h~k~e~~~~~~~~~~~~ 500 (597)
.+--.||..+|++..+.+++|+..|++. .++-+++|.+|++...-+.+-. =.+.++-+..+....+-
T Consensus 166 ~~~~~e~~~~~~~~~n~~~~eie~L~~~-~~~L~eEi~~Le~~~e~~~k~n------------~~rl~~Lqk~~~~~~~~ 232 (315)
T 2ve7_A 166 DEMNAELQSKLKDLFNVDAFKLESLEAK-NRALNEQIARLEQERSTANKAN------------AERLKRLQKSADLYKDR 232 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------------HTTTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhh------------HHHHHHHHHHHHHHHHH
Confidence 3444588889999888888887777774 3334444555543221111100 01234455666777788
Q ss_pred cCcccc
Q 007592 501 TGFKSI 506 (597)
Q Consensus 501 ~~~~~~ 506 (597)
.|+.-.
T Consensus 233 LGl~ie 238 (315)
T 2ve7_A 233 LGLEIR 238 (315)
T ss_dssp SCCCCC
T ss_pred cceEEE
Confidence 886543
No 9
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=10.18 E-value=4.5e+02 Score=25.50 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccc
Q 007592 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSF 466 (597)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~F 466 (597)
+--.++...++.+.+...++....+.+.|++.+.+|.+|+..|..
T Consensus 136 ~l~~~l~~~~~~r~~~l~~qi~~~~~~ak~~~~~~i~rl~~AL~I 180 (265)
T 3b8o_A 136 HLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKI 180 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577778887777777777777778999999999999998876
No 10
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=9.85 E-value=5.6e+02 Score=22.48 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007592 426 EFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQ 462 (597)
Q Consensus 426 EFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRK 462 (597)
+....|=+++...|+||=-|+.+.+ .++.+|..||.
T Consensus 49 e~~keLh~~I~~LEeEKYDlE~kv~-kq~yEI~eL~~ 84 (106)
T 1j1d_B 49 EKAKELWQTIYNLEAEKFDLQEKFK-QQKYEINVLRN 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-hhhHHHHHHHH
Confidence 4455555666778888888888654 45678888875
Done!