Query 007592
Match_columns 597
No_of_seqs 100 out of 129
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 05:37:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007592.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007592hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b8pa1 d.58.60.1 (A:54-292) C 17.1 90 0.0066 27.8 5.8 45 422-466 109-153 (239)
2 d3b8ma1 d.58.60.1 (A:64-330) E 15.6 1.1E+02 0.008 27.4 6.0 43 422-464 139-181 (267)
3 d3b8oa1 d.58.60.1 (A:55-319) L 15.4 1.2E+02 0.0085 27.4 6.2 44 422-465 136-179 (265)
4 d1efub3 a.5.2.2 (B:1-54) Elong 8.0 49 0.0036 24.4 0.6 13 492-504 6-18 (54)
5 d1aipc1 a.5.2.2 (C:2-53) Elong 6.4 66 0.0048 23.5 0.6 13 492-504 4-16 (52)
6 d1a9xa1 a.92.1.1 (A:403-555) C 6.1 2.2E+02 0.016 23.7 4.1 17 451-467 105-121 (153)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 4.4 5.1E+02 0.037 18.9 4.8 36 425-461 51-86 (88)
8 d1xb2b1 a.5.2.2 (B:56-111) Elo 4.0 1.2E+02 0.0085 22.4 0.6 13 492-504 6-18 (56)
9 d1t3ba2 d.17.3.1 (A:2-60) Disu 4.0 94 0.0068 22.7 0.1 13 465-477 17-29 (59)
10 d1eeja2 d.17.3.1 (A:1-60) Disu 3.7 2E+02 0.014 20.8 1.6 12 466-477 19-30 (60)
No 1
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=17.12 E-value=90 Score=27.84 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccc
Q 007592 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTSF 466 (597)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~F 466 (597)
+--.+|...++.+.+..+++...++...|...+.+|.+|...|..
T Consensus 109 ~l~~~i~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~AL~I 153 (239)
T d3b8pa1 109 ELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRY 153 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578889999999999999999999999999999999987653
No 2
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=15.57 E-value=1.1e+02 Score=27.41 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhcc
Q 007592 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQST 464 (597)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL 464 (597)
+--.+|...++.|.+..+.+...++.+.|++.+.+|.+|...|
T Consensus 139 ~l~~~~~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al 181 (267)
T d3b8ma1 139 ESIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSL 181 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788889999999999999999999999999999998654
No 3
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=15.39 E-value=1.2e+02 Score=27.41 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhccc
Q 007592 422 AKRKEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQQSTS 465 (597)
Q Consensus 422 eKRKEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLRKSL~ 465 (597)
+--.+|...++.+.+..+.+...+++..|...+-+|.+|...|.
T Consensus 136 ~l~~~l~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~AL~ 179 (265)
T d3b8oa1 136 HLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALK 179 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888999999999999999999999999999999997543
No 4
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.04 E-value=49 Score=24.39 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.0
Q ss_pred HHHHhhhhccCcc
Q 007592 492 HDIKKLRQSTGFK 504 (597)
Q Consensus 492 ~~~~~~~~~~~~~ 504 (597)
.+||+||..||.-
T Consensus 6 ~~iK~LR~~Tgag 18 (54)
T d1efub3 6 SLVKELRERTGAG 18 (54)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 5899999999974
No 5
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.45 E-value=66 Score=23.52 Aligned_cols=13 Identities=54% Similarity=0.616 Sum_probs=10.8
Q ss_pred HHHHhhhhccCcc
Q 007592 492 HDIKKLRQSTGFK 504 (597)
Q Consensus 492 ~~~~~~~~~~~~~ 504 (597)
..||+||+.||+-
T Consensus 4 elvK~LR~~Tga~ 16 (52)
T d1aipc1 4 ELIKKLREATGAG 16 (52)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 4789999999974
No 6
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=6.13 E-value=2.2e+02 Score=23.71 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=10.6
Q ss_pred hHHHHHHHHhhhccccc
Q 007592 451 DKAQCDIKKVQQSTSFE 467 (597)
Q Consensus 451 Ee~EaeIKkLRKSL~FK 467 (597)
...|.+|+++|+.++.+
T Consensus 105 ~~~e~~vr~~R~~~~i~ 121 (153)
T d1a9xa1 105 GVREAEIRKLRDQYDLH 121 (153)
T ss_dssp TSCHHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHHHccCC
Confidence 44566677777766543
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.40 E-value=5.1e+02 Score=18.95 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhh
Q 007592 425 KEFFQKLEEKNKAKEAEKGQLERRSKDKAQCDIKKVQ 461 (597)
Q Consensus 425 KEFy~KLEEK~~AkE~EK~qlqaKsKEe~EaeIKkLR 461 (597)
-+|...|++.....+.++.+++.+. +.-..+|.+|+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~-~~L~~~l~~L~ 86 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRR-EQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 3678888888888777777766533 22344444443
No 8
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=4.05 E-value=1.2e+02 Score=22.41 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=10.6
Q ss_pred HHHHhhhhccCcc
Q 007592 492 HDIKKLRQSTGFK 504 (597)
Q Consensus 492 ~~~~~~~~~~~~~ 504 (597)
..||+||+.||+-
T Consensus 6 ~lvk~LRe~Tga~ 18 (56)
T d1xb2b1 6 ELLMKLRRKTGYS 18 (56)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCC
Confidence 4689999999874
No 9
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=4.04 E-value=94 Score=22.71 Aligned_cols=13 Identities=0% Similarity=-0.008 Sum_probs=9.9
Q ss_pred ccccccCCCcccC
Q 007592 465 SFEAKQNKDLCCG 477 (597)
Q Consensus 465 ~FKAtPmPsFY~e 477 (597)
....+|+|.||.-
T Consensus 17 ~i~~spi~GlyeV 29 (59)
T d1t3ba2 17 VIKSSPISGIKTA 29 (59)
T ss_dssp CCCBCSSTTEECC
T ss_pred EEecCCCCCeEEE
Confidence 3467899999964
No 10
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.69 E-value=2e+02 Score=20.83 Aligned_cols=12 Identities=0% Similarity=-0.105 Sum_probs=9.4
Q ss_pred cccccCCCcccC
Q 007592 466 FEAKQNKDLCCG 477 (597)
Q Consensus 466 FKAtPmPsFY~e 477 (597)
-+.+|+|.||.-
T Consensus 19 V~~spi~GlyeV 30 (60)
T d1eeja2 19 IQPAPVAGMKTV 30 (60)
T ss_dssp EEECSSTTEEEE
T ss_pred EecCCCCCeEEE
Confidence 467899999963
Done!