BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007593
(597 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297737338|emb|CBI26539.3| unnamed protein product [Vitis vinifera]
Length = 868
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/603 (75%), Positives = 512/603 (84%), Gaps = 12/603 (1%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ F +MRADLASMWS
Sbjct: 266 YALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQTFLQMRADLASMWS 325
Query: 67 PRNRVGYSRRITTIVSSP-PLDER-TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 124
P NR G RR SSP PL+E+ A D E D V SMKDLLEAV+PFDIL DRR
Sbjct: 326 PSNRSGNPRRTAAKDSSPVPLNEKEIAFDYEGSLAVDADVTSMKDLLEAVLPFDILLDRR 385
Query: 125 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 184
KR FL++L K S+ QKK +VV+DAG+AL SLV CEEALE+ELLISTSY+PGMEVTLSSR
Sbjct: 386 KRINFLNNLGKCSKTQKKPQVVRDAGLALASLVLCEEALERELLISTSYVPGMEVTLSSR 445
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
LKSLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL GPA+QCCY+LL I+HRLW PI
Sbjct: 446 LKSLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCGPAVQCCYNLLSIIHRLWTPI 505
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
DGEFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHEYAEHGLAAHWLYKET NK
Sbjct: 506 DGEFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETENK 565
Query: 305 LQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIR 364
L S S +D+S+I+ASS S+D ++ N + D+FQKY SLK GHPV+RVEGS+LLAAV++R
Sbjct: 566 LPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLRVEGSHLLAAVVVR 625
Query: 365 VEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTC 424
V+K GRELLVAVSFGL ASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDWCTC
Sbjct: 626 VDKDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARLYKKVSDEWWFEPGHGDWCTC 685
Query: 425 LEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVS--- 481
LEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAVVSA+FEGK + S+ S
Sbjct: 686 LEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIFEGKQIASIESHSN 745
Query: 482 -----RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ--SKLGGKANGNPD 534
R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +RQ +K+G P
Sbjct: 746 SSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGMRQTKTKVGADPYSTPK 805
Query: 535 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVE 594
SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ VLPNT+LKDGD+VE
Sbjct: 806 SVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYVLPNTQLKDGDVVE 865
Query: 595 VRV 597
VR+
Sbjct: 866 VRM 868
>gi|357481159|ref|XP_003610865.1| GTP pyrophosphokinase [Medicago truncatula]
gi|355512200|gb|AES93823.1| GTP pyrophosphokinase [Medicago truncatula]
Length = 889
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/621 (68%), Positives = 489/621 (78%), Gaps = 32/621 (5%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA+AVA+ETL+IWCSLASRLGLWALKAELEDLCFAVLQPQIF+ MRADLASMWS
Sbjct: 271 YALPMHKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAVLQPQIFQSMRADLASMWS 330
Query: 67 PRNRVGYSRRITTIVSSPPLDERTASD--DESFTTFDEHVLSMKDLLEAVVPFDILSDRR 124
P R+G S R+ + PL E++++ ++S F+E + SMKDLLEAVVPFD+L DRR
Sbjct: 331 PSARIGSSGRLYLKGNLIPLAEKSSTSFYNKSLA-FNEGLCSMKDLLEAVVPFDVLLDRR 389
Query: 125 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 184
KR FL+ +A + E K KVVQDAG+AL SLV CEEALE+EL+IS SY+PGMEVTLSSR
Sbjct: 390 KRANFLYSIANNVETCTKPKVVQDAGLALASLVICEEALERELIISASYVPGMEVTLSSR 449
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
LKSLYSI+SKM+RKD I KVYDARALRVVVGDKNG LHGPA+QCCYSLLDIVHRLW PI
Sbjct: 450 LKSLYSIYSKMKRKDTSIDKVYDARALRVVVGDKNGALHGPAVQCCYSLLDIVHRLWTPI 509
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
DGEFDDYI+NPKPSGYQSLHTAV+GPD S LEVQIRTQ+MHEYAEHGLAAHWLYKETGN
Sbjct: 510 DGEFDDYIINPKPSGYQSLHTAVEGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETGNP 569
Query: 305 LQSISSMDESDIEASSSL----------------------------SKDTDDHNPLDTDL 336
S+ MD + +ASSS+ SKDT+ N D L
Sbjct: 570 FSSVDRMDTPETDASSSIDKMDAPETEASSSIDRMDTPETEASSYFSKDTEAENSSDI-L 628
Query: 337 FQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIK 396
K SLK GHPV+RVEGS+LLAAVII VE RELLVAVSF LAAS+ VADRR FQ K
Sbjct: 629 LSKNKSLKAGHPVLRVEGSHLLAAVIISVENEARELLVAVSFQLAASDAVADRRSFFQDK 688
Query: 397 CWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLT 456
WEAYARLYKK SDEWW +PGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTF+Q+ + T
Sbjct: 689 RWEAYARLYKKVSDEWWFEPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFVQVINFT 748
Query: 457 EEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRS 516
E+EESEYW VVSAVFEGK VD + S+ D V TSM+ASINNKV LLRTML WEEQLRS
Sbjct: 749 EQEESEYWDVVSAVFEGKQVDCIASQSKLDLVPSTSMDASINNKVHLLRTMLSWEEQLRS 808
Query: 517 EASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLV 576
E ++ Q+K K +G + GEVV++CWPNGEIMRL++GS+A DAA + GLEGKLVL+
Sbjct: 809 EVNINQTKHDAKFDGPRGPLNLGEVVVICWPNGEIMRLKAGSSAVDAAQRTGLEGKLVLI 868
Query: 577 NGQLVLPNTELKDGDIVEVRV 597
NG L LPNT+LKDGD++EVR+
Sbjct: 869 NGHLALPNTKLKDGDVLEVRI 889
>gi|449483240|ref|XP_004156531.1| PREDICTED: uncharacterized LOC101208449 [Cucumis sativus]
Length = 875
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/594 (71%), Positives = 488/594 (82%), Gaps = 6/594 (1%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA+AVAQETL+IWCSLASRLGLWALKAELEDLCFAVLQPQ+F K+R++LASMW
Sbjct: 285 YALPLPKAQAVAQETLVIWCSLASRLGLWALKAELEDLCFAVLQPQMFLKLRSELASMWM 344
Query: 67 PRNRVGYSRRITTIVSSPPLDER--TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 124
P +R G SR+I+ P LD T + T DE +MK+LLEAVVPFDIL+DRR
Sbjct: 345 PSSRAGSSRKISARADFPSLDSSSSTCCHNMPITVTDE-ATNMKELLEAVVPFDILADRR 403
Query: 125 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 184
KRT +L++L KS +A + KV+Q+A AL +LV CEEALE+EL+IS SY+PGMEVTLSSR
Sbjct: 404 KRTSYLNNLQKSIDACIQPKVMQEARNALAALVVCEEALEQELIISVSYVPGMEVTLSSR 463
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
LKSLYSI+SKM+RKDV I+KVYD RALRVVVGDKNGTLHGPA+QCCYSLL VH+LW PI
Sbjct: 464 LKSLYSIYSKMKRKDVSINKVYDTRALRVVVGDKNGTLHGPAVQCCYSLLHTVHKLWAPI 523
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
DGEFDDYIVNPKPSGYQSLHTAV GPD S LEVQIRTQ+MHEYAEHGLAAHWLYKE GNK
Sbjct: 524 DGEFDDYIVNPKPSGYQSLHTAVLGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKENGNK 583
Query: 305 LQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIR 364
S+SS D+S+ + S S DT+ N ++ D KY LK GHPV+RVEGS+LLAAVIIR
Sbjct: 584 TPSLSSKDDSERDVSRYFS-DTEFQNSIEDD-SHKYGFLKAGHPVLRVEGSHLLAAVIIR 641
Query: 365 VEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTC 424
V++ GRELLVAVSFGLAASE VADR SFQIK WEAYARLYKK S+EWWC+PGHGDWCTC
Sbjct: 642 VDEDGRELLVAVSFGLAASEAVADRSSSFQIKRWEAYARLYKKVSEEWWCEPGHGDWCTC 701
Query: 425 LEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRS 484
LEKYTLCRDGMYHKQDQFGRLLPTFIQ+ TE+EE EYWA++SA+ EGK +++ SR S
Sbjct: 702 LEKYTLCRDGMYHKQDQFGRLLPTFIQVIDFTEQEEFEYWAIMSAISEGKQIETASSRTS 761
Query: 485 SDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEA-SLRQSKLGGKANGNPDSVVPGEVVI 543
S+SVA S +ASIN KVR LRTML+WEEQL EA + RQ+K GG+ S+ EVVI
Sbjct: 762 SNSVASISTDASINTKVRFLRTMLQWEEQLLCEAGNFRQAKQGGEYYVCRSSITLEEVVI 821
Query: 544 VCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
VCWP GEIMRLR+GSTAADAA +VG EG+LVL+NG VLPNTELKDGD+VEVRV
Sbjct: 822 VCWPLGEIMRLRTGSTAADAARRVGSEGRLVLINGLPVLPNTELKDGDVVEVRV 875
>gi|449439043|ref|XP_004137297.1| PREDICTED: uncharacterized protein LOC101208449 [Cucumis sativus]
Length = 706
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/594 (71%), Positives = 488/594 (82%), Gaps = 6/594 (1%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA+AVAQETL+IWCSLASRLGLWALKAELEDLCFAVLQPQ+F K+R++LASMW
Sbjct: 116 YALPLPKAQAVAQETLVIWCSLASRLGLWALKAELEDLCFAVLQPQMFLKLRSELASMWM 175
Query: 67 PRNRVGYSRRITTIVSSPPLDER--TASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 124
P +R G SR+I+ P LD T + T DE +MK+LLEAVVPFDIL+DRR
Sbjct: 176 PSSRAGSSRKISARADFPSLDSSSSTCCHNMPITVTDE-ATNMKELLEAVVPFDILADRR 234
Query: 125 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 184
KRT +L++L KS +A + KV+Q+A AL +LV CEEALE+EL+IS SY+PGMEVTLSSR
Sbjct: 235 KRTSYLNNLQKSIDACIQPKVMQEARNALAALVVCEEALEQELIISVSYVPGMEVTLSSR 294
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
LKSLYSI+SKM+RKDV I+KVYD RALRVVVGDKNGTLHGPA+QCCYSLL VH+LW PI
Sbjct: 295 LKSLYSIYSKMKRKDVSINKVYDTRALRVVVGDKNGTLHGPAVQCCYSLLHTVHKLWAPI 354
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
DGEFDDYIVNPKPSGYQSLHTAV GPD S LEVQIRTQ+MHEYAEHGLAAHWLYKE GNK
Sbjct: 355 DGEFDDYIVNPKPSGYQSLHTAVLGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKENGNK 414
Query: 305 LQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIR 364
S+SS D+S+ + S S DT+ N ++ D KY LK GHPV+RVEGS+LLAAVIIR
Sbjct: 415 TPSLSSKDDSERDVSRYFS-DTEFQNSIEDD-SHKYGFLKAGHPVLRVEGSHLLAAVIIR 472
Query: 365 VEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTC 424
V++ GRELLVAVSFGLAASE VADR SFQIK WEAYARLYKK S+EWWC+PGHGDWCTC
Sbjct: 473 VDEDGRELLVAVSFGLAASEAVADRSSSFQIKRWEAYARLYKKVSEEWWCEPGHGDWCTC 532
Query: 425 LEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRS 484
LEKYTLCRDGMYHKQDQFGRLLPTFIQ+ TE+EE EYWA++SA+ EGK +++ SR S
Sbjct: 533 LEKYTLCRDGMYHKQDQFGRLLPTFIQVIDFTEQEEFEYWAIMSAISEGKQIETASSRTS 592
Query: 485 SDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEA-SLRQSKLGGKANGNPDSVVPGEVVI 543
S+SVA S +ASIN KVR LRTML+WEEQL EA + RQ+K GG+ S+ EVVI
Sbjct: 593 SNSVASISTDASINTKVRFLRTMLQWEEQLLCEAGNFRQAKQGGEYYVCRSSITLEEVVI 652
Query: 544 VCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
VCWP GEIMRLR+GSTAADAA +VG EG+LVL+NG VLPNTELKDGD+VEVRV
Sbjct: 653 VCWPLGEIMRLRTGSTAADAARRVGSEGRLVLINGLPVLPNTELKDGDVVEVRV 706
>gi|255557973|ref|XP_002520015.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ricinus communis]
gi|223540779|gb|EEF42339.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative
[Ricinus communis]
Length = 806
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/591 (71%), Positives = 465/591 (78%), Gaps = 58/591 (9%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALPP KA+AVAQETL IWCSLASRLGLWALKAELEDLCFAVLQ DL
Sbjct: 274 YALPPLKAQAVAQETLHIWCSLASRLGLWALKAELEDLCFAVLQ---------DLLEAVV 324
Query: 67 PRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKR 126
P + + ++ T ++S SD ++R
Sbjct: 325 PFDILLDRKKGTIFLNS---------------------------------LRKTSDAQRR 351
Query: 127 TKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 186
K + D AGIAL SL+ACEEALE+ELLISTSY+PGMEVTLSSRLK
Sbjct: 352 PKVVQD----------------AGIALASLIACEEALERELLISTSYVPGMEVTLSSRLK 395
Query: 187 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246
SLYS+++KM+RKDVGI KVYDARALRVVVGDKNG LHGPAIQCCYSLLDIVHRLW PIDG
Sbjct: 396 SLYSMYTKMKRKDVGIDKVYDARALRVVVGDKNGALHGPAIQCCYSLLDIVHRLWTPIDG 455
Query: 247 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 306
EFDDYIVNPKPSGYQSLHTAVQGPD ++LEVQIRTQKMHEYAEHGLAAHWLYKETGNKL
Sbjct: 456 EFDDYIVNPKPSGYQSLHTAVQGPDNASLEVQIRTQKMHEYAEHGLAAHWLYKETGNKLP 515
Query: 307 SISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVE 366
SISSMDES+ EASS LSKD +DHN + D FQKY SLK+GHPV+RV+GS+LLAAVIIRV+
Sbjct: 516 SISSMDESETEASSCLSKDFEDHNSIGEDQFQKYRSLKVGHPVLRVQGSHLLAAVIIRVD 575
Query: 367 KGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLE 426
K GRELLVAV FGLAASE VADRR SF K WEAYARLYKK SDEWWC+PGHGDWCTCLE
Sbjct: 576 KDGRELLVAVGFGLAASEAVADRRSSFPRKRWEAYARLYKKVSDEWWCEPGHGDWCTCLE 635
Query: 427 KYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSD 486
KYTLCRDGMYHKQDQF RLLPTFIQ+ LTE+EESEYWAVVSAVFEGKPVDSV SR + D
Sbjct: 636 KYTLCRDGMYHKQDQFERLLPTFIQVIDLTEQEESEYWAVVSAVFEGKPVDSVASRPNLD 695
Query: 487 SVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCW 546
S A ++A INNKVRLLRTMLRWEEQLR+EASL Q K K++ DS++ EVVI+CW
Sbjct: 696 SAASNPIDAGINNKVRLLRTMLRWEEQLRTEASLGQPKYDMKSHYTADSIILSEVVIICW 755
Query: 547 PNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
P+GEIMRLR+GSTAADAA +VGLEGKLVLVNGQLVLP+TEL DGD+VEVRV
Sbjct: 756 PHGEIMRLRTGSTAADAARRVGLEGKLVLVNGQLVLPSTELSDGDVVEVRV 806
>gi|225454821|ref|XP_002274363.1| PREDICTED: uncharacterized protein LOC100247726 [Vitis vinifera]
Length = 816
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/601 (67%), Positives = 465/601 (77%), Gaps = 68/601 (11%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA+AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ +
Sbjct: 274 YALPLPKAQAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQDLL------------- 320
Query: 67 PRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKR 126
E VL LL+ + L++ K
Sbjct: 321 -----------------------------------EAVLPFDILLDRRKRINFLNNLGKC 345
Query: 127 TKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 186
+K QKK +VV+DAG+AL SLV CEEALE+ELLISTSY+PGMEVTLSSRLK
Sbjct: 346 SK----------TQKKPQVVRDAGLALASLVLCEEALERELLISTSYVPGMEVTLSSRLK 395
Query: 187 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246
SLYSI+SKM+RKDVGI+K+YDARALRVVVGDKNGTL GPA+QCCY+LL I+HRLW PIDG
Sbjct: 396 SLYSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLCGPAVQCCYNLLSIIHRLWTPIDG 455
Query: 247 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 306
EFDDYIVNPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHEYAEHGLAAHWLYKET NKL
Sbjct: 456 EFDDYIVNPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETENKLP 515
Query: 307 SISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVE 366
S S +D+S+I+ASS S+D ++ N + D+FQKY SLK GHPV+RVEGS+LLAAV++RV+
Sbjct: 516 STSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLRVEGSHLLAAVVVRVD 575
Query: 367 KGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLE 426
K GRELLVAVSFGL ASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDWCTCLE
Sbjct: 576 KDGRELLVAVSFGLVASEAVADRRSSFQIKRWEAYARLYKKVSDEWWFEPGHGDWCTCLE 635
Query: 427 KYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVS----- 481
KYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAVVSA+FEGK + S+ S
Sbjct: 636 KYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIFEGKQIASIESHSNSS 695
Query: 482 ---RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ--SKLGGKANGNPDSV 536
R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +RQ +K+G P SV
Sbjct: 696 FYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGMRQTKTKVGADPYSTPKSV 755
Query: 537 VPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 596
V GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ VLPNT+LKDGD+VEVR
Sbjct: 756 VLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYVLPNTQLKDGDVVEVR 815
Query: 597 V 597
+
Sbjct: 816 M 816
>gi|356495744|ref|XP_003516733.1| PREDICTED: uncharacterized protein LOC100795418 [Glycine max]
Length = 782
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/591 (67%), Positives = 447/591 (75%), Gaps = 62/591 (10%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA+AVA+ETL+IWCSLASRLGLWALKAELEDLCFAVLQ +
Sbjct: 254 YALPLQKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAVLQDLL------------- 300
Query: 67 PRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKR 126
E+ FD IL DRRKR
Sbjct: 301 ----------------------------EAVVPFD-----------------ILLDRRKR 315
Query: 127 TKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 186
+L + + E K KVVQDAG+AL S+V CEEALE+E++IS SY+PGME+TLSSRLK
Sbjct: 316 ANYLSSIGNNLETCTKPKVVQDAGLALASMVICEEALEREMIISASYVPGMEITLSSRLK 375
Query: 187 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246
SLYS++SKM+RKD+ I KVYDARALRVVVGDKNGTLHGPA+QCCYSLLDIVHRLW PIDG
Sbjct: 376 SLYSLYSKMKRKDISIDKVYDARALRVVVGDKNGTLHGPAVQCCYSLLDIVHRLWTPIDG 435
Query: 247 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 306
EFDDYI+NPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE AE GLAAHWLYKETGN
Sbjct: 436 EFDDYIINPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHECAEQGLAAHWLYKETGNPFL 495
Query: 307 SISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVE 366
SI SMDE + EASS SKD ++ N D L KY SLK GHPV+RVEGS+LLAA+II VE
Sbjct: 496 SIDSMDEPETEASSYFSKDLEEGNSSDI-LLSKYKSLKAGHPVLRVEGSHLLAAIIISVE 554
Query: 367 KGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLE 426
RELLVAVSFGLAASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDW TCLE
Sbjct: 555 NDERELLVAVSFGLAASEAVADRR-SFQIKRWEAYARLYKKVSDEWWFEPGHGDWFTCLE 613
Query: 427 KYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSD 486
KYTLCRDGMYHKQDQFGRLLPTFIQ+ + TE+EESEYWAVVSAVFEG+ VD + SR D
Sbjct: 614 KYTLCRDGMYHKQDQFGRLLPTFIQVINFTEQEESEYWAVVSAVFEGRQVDWITSRSKFD 673
Query: 487 SVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCW 546
VA TS+EA INNKV LLRTML WEEQLRSE S Q+K K S+ GEVVI+CW
Sbjct: 674 LVASTSVEAGINNKVNLLRTMLSWEEQLRSEVSFMQAKHDAKLYDLHGSL--GEVVIICW 731
Query: 547 PNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
P+GEI+RL++GSTA DAA +VGLEGKLVL+NGQLVLPNT+L+DGD+VEVR+
Sbjct: 732 PHGEILRLKAGSTATDAAQRVGLEGKLVLINGQLVLPNTKLRDGDVVEVRI 782
>gi|356538795|ref|XP_003537886.1| PREDICTED: uncharacterized protein LOC100799181 [Glycine max]
Length = 793
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/591 (67%), Positives = 451/591 (76%), Gaps = 62/591 (10%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA+AVA+ETL+IWCSLASRLGLWALKAELEDLCFAVLQ +
Sbjct: 265 YALPLQKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAVLQDLL------------- 311
Query: 67 PRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKR 126
E+ FD IL DRRKR
Sbjct: 312 ----------------------------EAVVPFD-----------------ILLDRRKR 326
Query: 127 TKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLK 186
+L + + E KK KVVQ+AG+AL ++V CEEALE+E++IS+SY+PGME+TLSSRLK
Sbjct: 327 ANYLSSIGNNLETCKKPKVVQEAGLALATMVICEEALEREMIISSSYVPGMEITLSSRLK 386
Query: 187 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246
SLYS++SKM+RKDV I KVYDARALRVVVGDKNGTLHGPA++CCYSLLDIVHRLW PIDG
Sbjct: 387 SLYSLYSKMKRKDVSIDKVYDARALRVVVGDKNGTLHGPAVRCCYSLLDIVHRLWTPIDG 446
Query: 247 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 306
EFDDYI+NPKPSGYQSLHTAVQGPD S LEVQIRTQ+MHE AEHGLAAHWLYKETGN
Sbjct: 447 EFDDYIINPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHECAEHGLAAHWLYKETGNPFL 506
Query: 307 SISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVE 366
SI SMDE + EASS SK+ ++ N D L KY SLK GHPV+RVEGS+LLAAVII VE
Sbjct: 507 SIDSMDEPETEASSYFSKNLEEGNSSDI-LSSKYKSLKAGHPVLRVEGSHLLAAVIISVE 565
Query: 367 KGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLE 426
RELLVAVSFGLAASE VADRR SFQIK WEAYARLYKK SDEWW +PGHGDW TCLE
Sbjct: 566 NDERELLVAVSFGLAASEAVADRR-SFQIKRWEAYARLYKKVSDEWWFEPGHGDWFTCLE 624
Query: 427 KYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSD 486
KYTLCRDGMYHKQDQFGRLLPTFIQ+ + TE+E+SEYWAVVSAVFEG+ VD + SR D
Sbjct: 625 KYTLCRDGMYHKQDQFGRLLPTFIQVINFTEQEKSEYWAVVSAVFEGRQVDWITSRSKFD 684
Query: 487 SVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCW 546
VA TS+EA I+NKV LLRTML WEEQLRSE + +Q+K K S+ GEVVI+CW
Sbjct: 685 LVASTSVEAGIDNKVNLLRTMLSWEEQLRSEVNFKQTKHDVKLYDLHGSL--GEVVIICW 742
Query: 547 PNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
P+GEI+RL++GSTA DAA +VGLEGKLVL+NGQLVLPNT+LKDGD+VEVR+
Sbjct: 743 PHGEILRLKAGSTATDAAQRVGLEGKLVLINGQLVLPNTKLKDGDVVEVRI 793
>gi|297599793|ref|NP_001047830.2| Os02g0699400 [Oryza sativa Japonica Group]
gi|255671187|dbj|BAF09744.2| Os02g0699400 [Oryza sativa Japonica Group]
Length = 868
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/603 (63%), Positives = 465/603 (77%), Gaps = 16/603 (2%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
FSYALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +M
Sbjct: 272 FSYALPIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTM 331
Query: 65 WSPRNRVGYSRRITTIVSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 121
W+ N+ +RR ++I S P D T S + F+ ++ +MKDLL+AV+PFD+L
Sbjct: 332 WNSTNKTKSTRR-SSIRSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLL 390
Query: 122 DRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 180
DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVT
Sbjct: 391 DRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVT 450
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
LSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RL
Sbjct: 451 LSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRL 510
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE
Sbjct: 511 WTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKE 570
Query: 301 TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAA 360
+ K+ S +++S S ++D N + + KYSS+KMGHPV+R+EGS LLAA
Sbjct: 571 S--KVDYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKMGHPVLRIEGSQLLAA 628
Query: 361 VIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGD 420
VI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGD
Sbjct: 629 VIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGD 688
Query: 421 WCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------ 474
W T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK
Sbjct: 689 WSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLT 748
Query: 475 PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPD 534
P S R +S+ + T + INNKV LLRTML+WEEQ+R ASL + L P
Sbjct: 749 PDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLVEKSLSVGTCTEP- 807
Query: 535 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVE 594
+ EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVE
Sbjct: 808 --ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVE 865
Query: 595 VRV 597
VR+
Sbjct: 866 VRM 868
>gi|222623497|gb|EEE57629.1| hypothetical protein OsJ_08040 [Oryza sativa Japonica Group]
Length = 808
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/603 (63%), Positives = 465/603 (77%), Gaps = 16/603 (2%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
FSYALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +M
Sbjct: 212 FSYALPIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTM 271
Query: 65 WSPRNRVGYSRRITTIVSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 121
W+ N+ +RR ++I S P D T S + F+ ++ +MKDLL+AV+PFD+L
Sbjct: 272 WNSTNKTKSTRR-SSIRSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLL 330
Query: 122 DRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 180
DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVT
Sbjct: 331 DRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVT 390
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
LSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RL
Sbjct: 391 LSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRL 450
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE
Sbjct: 451 WTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKE 510
Query: 301 TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAA 360
+ K+ S +++S S ++D N + + KYSS+KMGHPV+R+EGS LLAA
Sbjct: 511 S--KVDYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKMGHPVLRIEGSQLLAA 568
Query: 361 VIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGD 420
VI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGD
Sbjct: 569 VIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGD 628
Query: 421 WCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------ 474
W T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK
Sbjct: 629 WSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLT 688
Query: 475 PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPD 534
P S R +S+ + T + INNKV LLRTML+WEEQ+R ASL + L P
Sbjct: 689 PDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLVEKSLSVGTCTEP- 747
Query: 535 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVE 594
+ EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVE
Sbjct: 748 --ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVE 805
Query: 595 VRV 597
VR+
Sbjct: 806 VRM 808
>gi|218191410|gb|EEC73837.1| hypothetical protein OsI_08580 [Oryza sativa Indica Group]
Length = 847
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/603 (63%), Positives = 465/603 (77%), Gaps = 16/603 (2%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
FSYALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQP +F+KMR++L +M
Sbjct: 251 FSYALPIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPHVFKKMRSELTTM 310
Query: 65 WSPRNRVGYSRRITTIVSSPPL---DERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 121
W+ N+ +RR ++I S P D T S + F+ ++ +MKDLL+AV+PFD+L
Sbjct: 311 WNSTNKTKSTRR-SSIRSGLPASTKDVHTTSVHDFFSLSNQEKPNMKDLLQAVLPFDLLL 369
Query: 122 DRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 180
DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE+ELLISTSYIPGMEVT
Sbjct: 370 DRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQELLISTSYIPGMEVT 429
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
LSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGPA++ CYS+LDIV+RL
Sbjct: 430 LSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGPAVKNCYSVLDIVNRL 489
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAE+GLAAHWLYKE
Sbjct: 490 WTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMHEYAEYGLAAHWLYKE 549
Query: 301 TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAA 360
+ K+ S +++S S ++D + + + KYSS+KMGHPV+R+EGS LLAA
Sbjct: 550 S--KVDYRSGTSNKIGQSTSYPSSSSEDESYIQDVMPSKYSSMKMGHPVLRIEGSQLLAA 607
Query: 361 VIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGD 420
VI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+YKK S++WWC PGHGD
Sbjct: 608 VIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVYKKVSEKWWCAPGHGD 667
Query: 421 WCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGK------ 474
W T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW VVSA+FEGK
Sbjct: 668 WSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWMVVSAIFEGKEASSLT 727
Query: 475 PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPD 534
P S R +S+ + T + INNKV LLRTML+WEEQ+R ASL + L P
Sbjct: 728 PDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLAEKSLSVGTCTEP- 786
Query: 535 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVE 594
+ EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVE
Sbjct: 787 --ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVE 844
Query: 595 VRV 597
VR+
Sbjct: 845 VRM 847
>gi|242066290|ref|XP_002454434.1| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]
gi|241934265|gb|EES07410.1| hypothetical protein SORBIDRAFT_04g030900 [Sorghum bicolor]
Length = 878
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/600 (62%), Positives = 465/600 (77%), Gaps = 14/600 (2%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQPQ+F+K+R++L MWS
Sbjct: 284 YALPVPKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPQVFKKIRSELTLMWS 343
Query: 67 PRNRVGYSRR--ITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRR 124
+ RR I + + D S ++ F++ ++ +MKDLL+AV+PFDI DR+
Sbjct: 344 RTGKSKNMRRSSIRNELLASMKDGHMTSINDLFSSCNQEKPNMKDLLQAVLPFDIFLDRK 403
Query: 125 KRTKFLHDLAKSS-EAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSS 183
+R+ FL +L +S E+ K+V DA +AL SL +CEE LE+ELLISTSYIPGMEVTLSS
Sbjct: 404 RRSYFLRNLNNNSGESIPNPKIVDDAAVALASLASCEEELERELLISTSYIPGMEVTLSS 463
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
RLKSLYSI+ KM+RKD G+ +VYDARALRV+VGDKNG +HGPA++ CYS+LDIVHRLW P
Sbjct: 464 RLKSLYSIYCKMKRKDKGLRQVYDARALRVIVGDKNGAMHGPAVRSCYSILDIVHRLWTP 523
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
IDGEFDDYI+NPK SGY+SLHTAVQ D S LEVQIRTQ+MHEYAEHGLAAHWLYKE+
Sbjct: 524 IDGEFDDYIINPKGSGYRSLHTAVQASDSSPLEVQIRTQRMHEYAEHGLAAHWLYKES-- 581
Query: 304 KLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVII 363
K++ SSM + +++S S ++D + + D+ KYSS+K+GHPV+R+EG +LLAAVI+
Sbjct: 582 KVEYRSSMSKRIRQSTSYSSSSSEDESSIQDDIPSKYSSIKVGHPVLRIEGCDLLAAVIV 641
Query: 364 RVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGDWCT 423
++KGG+EL+VAVSF L ASE VA+ R SFQ+K WEAYARL+KK S++WWC PGHGDW T
Sbjct: 642 SIDKGGKELIVAVSFSLEASEAVAELRSSFQLKRWEAYARLHKKVSEKWWCAPGHGDWST 701
Query: 424 CLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRR 483
LE+YTLC+DG++HKQDQFGRLLPTF+QI LTEEEE EYW VVSA+FEGK S+ S
Sbjct: 702 NLERYTLCQDGIFHKQDQFGRLLPTFLQIIDLTEEEEEEYWMVVSAIFEGKETCSLPSES 761
Query: 484 S-SDSVAPTSMEAS-----INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVV 537
S +D + ++ INNKV LLRTML+WEEQ+R ASL + LG P +
Sbjct: 762 SYADKSSSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLAEKSLGVNTCTKP---I 818
Query: 538 PGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
EV I+ WPNG+IMR+ +GSTAADAA ++G+EGKL+ VNGQ+VLP TELKDGDIVEVRV
Sbjct: 819 LREVAIIFWPNGKIMRMSTGSTAADAARRMGVEGKLLWVNGQVVLPQTELKDGDIVEVRV 878
>gi|413923562|gb|AFW63494.1| hypothetical protein ZEAMMB73_341215 [Zea mays]
Length = 877
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/603 (62%), Positives = 464/603 (76%), Gaps = 20/603 (3%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQPQIF+K++++L MW
Sbjct: 283 YALPVPKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQPQIFKKIQSELTLMW- 341
Query: 67 PRNRVGYSRR-----ITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILS 121
NR G S+ I + + D S ++ F++ ++ +MKDLL+AV+PFDI
Sbjct: 342 --NRTGKSKNMRRSSIRNELLASMKDGNMVSINDLFSSCNQERPNMKDLLQAVLPFDIFL 399
Query: 122 DRRKRTKFLHDL-AKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 180
DR++R+ FL +L + S E+ K+V DA +AL SL +CEE LE+ELLISTSYIPGMEVT
Sbjct: 400 DRKRRSYFLSNLNSNSGESIPNPKIVDDAAVALASLASCEEELERELLISTSYIPGMEVT 459
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
LSSRLKSLYSI+ KM+RK+VGI +VYDARALRV+VGDKNG +HG A++ CYS+LDIVHRL
Sbjct: 460 LSSRLKSLYSIYCKMKRKEVGIRQVYDARALRVIVGDKNGAMHGSAVRSCYSILDIVHRL 519
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHEYAEHGLAAHWLYKE
Sbjct: 520 WTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMHEYAEHGLAAHWLYKE 579
Query: 301 TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAA 360
+ K++ SSM + +++S S ++D + + D+ KYSS+K+GHPV+R+EGS+LLAA
Sbjct: 580 S--KVEYRSSMSKRIRQSTSYSSSSSEDESSVQDDIPSKYSSMKVGHPVLRIEGSHLLAA 637
Query: 361 VIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEWWCQPGHGD 420
V++ ++KGG+EL+VAVSF L ASE VA+ R SFQ+K WEAYARL+KK S++WWC PGHGD
Sbjct: 638 VVVSIDKGGKELIVAVSFSLEASEAVAELRSSFQLKRWEAYARLHKKVSEKWWCAPGHGD 697
Query: 421 WCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVV 480
W T LE+YTLC+DG++HKQDQFGRLLPTFIQI L EEEE EYW VVSA+FEGK S+
Sbjct: 698 WSTNLERYTLCQDGIFHKQDQFGRLLPTFIQIIDLAEEEEEEYWMVVSAIFEGKETCSLP 757
Query: 481 SRRS-SDSVAPTSMEAS-----INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPD 534
S S +D + ++ INNKV LLRTML+WEEQ+R ASL + L
Sbjct: 758 SESSYADKSSSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGASLAEKSLSASIC---T 814
Query: 535 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVE 594
+ EV I+ WPNG+IMR+ +GSTAADAA ++G+EGKL+ VNGQLVLP TELKDGDIVE
Sbjct: 815 KAILREVAIIFWPNGKIMRMSTGSTAADAARRMGVEGKLLWVNGQLVLPQTELKDGDIVE 874
Query: 595 VRV 597
VRV
Sbjct: 875 VRV 877
>gi|326495622|dbj|BAJ85907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/506 (64%), Positives = 393/506 (77%), Gaps = 30/506 (5%)
Query: 107 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEK 165
M+DLL+AV+PFD+ DRR+R+ FL++L SSEA +K K+V DA IALTSL ACEE L++
Sbjct: 1 MEDLLQAVLPFDLFLDRRRRSDFLNNLQSSSEASIRKPKIVDDAAIALTSLAACEEELQQ 60
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
ELLI+TSYIPGMEV LSSRLKSLYSI+ KM+RK VGI +VYDARALRV+VGDKNG LHGP
Sbjct: 61 ELLITTSYIPGMEVRLSSRLKSLYSIYCKMKRKHVGIRQVYDARALRVIVGDKNGALHGP 120
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
A++ CY++LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MH
Sbjct: 121 AVRSCYNILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMH 180
Query: 286 EYAEHGLAAHWLYKET--------GNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 337
EYAE+GLAAHWLYKE+ GNK++ +S + ASSS + D P
Sbjct: 181 EYAEYGLAAHWLYKESNVNTGSGMGNKIK------QSTLYASSSSEDEITDGVP------ 228
Query: 338 QKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKC 397
KY S+K+GHPV+R++G++LLAAVI+ +EKGG+ELLVAV F L ASE VA+RR SFQ+K
Sbjct: 229 SKYISMKVGHPVLRIDGNHLLAAVIVSIEKGGKELLVAVRFTLEASEDVAERRSSFQLKR 288
Query: 398 WEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTE 457
WEAYARL+KK +++WWC PGHGDW T LEKY LCRDG+YHKQDQFGRLLPTFIQI LTE
Sbjct: 289 WEAYARLHKKVTEKWWCAPGHGDWSTNLEKYILCRDGIYHKQDQFGRLLPTFIQIIDLTE 348
Query: 458 EEESEYWAVVSAVFEGKPVDSVVS------RRSSDSVAPTSMEASINNKVRLLRTMLRWE 511
EEE EYW VVSAVFEGK ++ S R +SD T + INNKV LLRTML+WE
Sbjct: 349 EEEEEYWMVVSAVFEGKETSTLTSESSNGDRSTSDLPISTPLSDPINNKVHLLRTMLQWE 408
Query: 512 EQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEG 571
EQ+R AS+ + LG K+ +P + EV I+CWP G+IMR+ +GSTAADA ++G++G
Sbjct: 409 EQVRRRASVAERSLGAKSLTDP---ILREVAIICWPYGKIMRMSTGSTAADAGRRLGVDG 465
Query: 572 KLVLVNGQLVLPNTELKDGDIVEVRV 597
KL+ VNG LVLP TELKDGDIVEVR
Sbjct: 466 KLLWVNGLLVLPQTELKDGDIVEVRT 491
>gi|357137144|ref|XP_003570161.1| PREDICTED: uncharacterized protein LOC100839209 [Brachypodium
distachyon]
Length = 812
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/497 (63%), Positives = 390/497 (78%), Gaps = 17/497 (3%)
Query: 107 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 166
++DLL+AV+PFD+ DR +R+ FL++L SSEA KK K+V DA +ALTSL ACEE L++E
Sbjct: 325 LQDLLQAVLPFDLFLDRGRRSDFLNNLQSSSEASKKPKIVDDAAVALTSLAACEEELQQE 384
Query: 167 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 226
LLI+TSYIPGMEVTLSSRLKSLYSI+ KM RK VGI +VYDARALRV+VGDKNG LHGPA
Sbjct: 385 LLITTSYIPGMEVTLSSRLKSLYSIYCKMERKHVGIRQVYDARALRVIVGDKNGALHGPA 444
Query: 227 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 286
++ CYS+LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MHE
Sbjct: 445 VRSCYSILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRTQRMHE 504
Query: 287 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMG 346
YAE+GLAAHWLYKE+ K+ + S M +++S S ++D + + + S+K+G
Sbjct: 505 YAEYGLAAHWLYKES--KVDTRSGMSNKISQSTSYASSSSEDESYVKDSI----PSIKVG 558
Query: 347 HPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYK 406
HPV+R++G++LLAAVI+ ++KGG+ELLVAV F ASE VA+RR SFQ++ WEAYARL+K
Sbjct: 559 HPVLRIDGNHLLAAVIVSIDKGGKELLVAVHFTHEASEDVAERRSSFQLERWEAYARLHK 618
Query: 407 KASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAV 466
K +++WWC PGHGDW T LEKYTLCRDG++HKQDQFGRLLPTFIQI LTEEEE EYW V
Sbjct: 619 KVTEKWWCAPGHGDWSTNLEKYTLCRDGIFHKQDQFGRLLPTFIQIIDLTEEEEDEYWMV 678
Query: 467 VSAVFEGKPVDSVVSRRSSDSVAPTSMEAS-------INNKVRLLRTMLRWEEQLRSEAS 519
VSAVFEGK ++ S SS++ PTS S INNKV LLRTML+WEEQ+R AS
Sbjct: 679 VSAVFEGKETSTLTS-ESSNADRPTSYPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGAS 737
Query: 520 LRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQ 579
+ LG + P + EV I+CWP G+IMR+ +GSTAADA ++G++GKL+ VNGQ
Sbjct: 738 WAERSLGARTLTEP---ILHEVAIICWPYGKIMRMSTGSTAADAGRRMGVDGKLLWVNGQ 794
Query: 580 LVLPNTELKDGDIVEVR 596
LV P TELKDGDIVEVR
Sbjct: 795 LVQPQTELKDGDIVEVR 811
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 40/44 (90%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 50
YALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQ
Sbjct: 283 YALPIPKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQ 326
>gi|41052967|dbj|BAD07877.1| putative relA/spoT homologous protein RSH2 [Oryza sativa Japonica
Group]
Length = 772
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 321/498 (64%), Positives = 390/498 (78%), Gaps = 12/498 (2%)
Query: 107 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQ-KKAKVVQDAGIALTSLVACEEALEK 165
++DLL+AV+PFD+L DR++R+ FL++L SSE K K+V DA +AL SL ACEE LE+
Sbjct: 280 LQDLLQAVLPFDLLLDRKRRSYFLNNLHGSSETSVPKPKIVDDAAVALASLAACEEELEQ 339
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
ELLISTSYIPGMEVTLSSRLKSLYS++ KM+RK VGI ++YDARALRV++GDKNG LHGP
Sbjct: 340 ELLISTSYIPGMEVTLSSRLKSLYSMYCKMKRKHVGIKQIYDARALRVIIGDKNGALHGP 399
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
A++ CYS+LDIV+RLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRTQ+MH
Sbjct: 400 AVKNCYSVLDIVNRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDNSPLEVQIRTQRMH 459
Query: 286 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 345
EYAE+GLAAHWLYKE+ K+ S +++S S ++D N + + KYSS+KM
Sbjct: 460 EYAEYGLAAHWLYKES--KVDYRSGTSNKIGQSTSYPSSSSEDENYIQDVMPSKYSSMKM 517
Query: 346 GHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLY 405
GHPV+R+EGS LLAAVI+ ++KGG+ELLVAVSFGL ASE VA+RR FQ+K WE YAR+Y
Sbjct: 518 GHPVLRIEGSQLLAAVIVSIDKGGKELLVAVSFGLEASEAVAERRSCFQLKRWETYARVY 577
Query: 406 KKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWA 465
KK S++WWC PGHGDW T LEKYTLC+DG++HKQDQFGRLLPTFIQ+ LTEEEE EYW
Sbjct: 578 KKVSEKWWCAPGHGDWSTNLEKYTLCQDGIFHKQDQFGRLLPTFIQLIDLTEEEEEEYWM 637
Query: 466 VVSAVFEGK------PVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEAS 519
VVSA+FEGK P S R +S+ + T + INNKV LLRTML+WEEQ+R AS
Sbjct: 638 VVSAIFEGKEASSLTPDSSNTERSTSEPPSSTPLSDPINNKVHLLRTMLQWEEQVRRGAS 697
Query: 520 LRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQ 579
L + L P + EV I+CWP G+IMR+ GSTAADAA ++G+EGKL+ VNGQ
Sbjct: 698 LVEKSLSVGTCTEP---ILREVAIICWPYGKIMRMSLGSTAADAARRMGVEGKLLWVNGQ 754
Query: 580 LVLPNTELKDGDIVEVRV 597
LVLP TELKDGDIVEVR+
Sbjct: 755 LVLPQTELKDGDIVEVRM 772
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/46 (86%), Positives = 42/46 (91%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQ 50
FSYALP KA AVAQETL +WCSLASRLG+WALKAELEDLCFAVLQ
Sbjct: 236 FSYALPIRKAEAVAQETLAVWCSLASRLGVWALKAELEDLCFAVLQ 281
>gi|302810512|ref|XP_002986947.1| hypothetical protein SELMODRAFT_446775 [Selaginella moellendorffii]
gi|300145352|gb|EFJ12029.1| hypothetical protein SELMODRAFT_446775 [Selaginella moellendorffii]
Length = 947
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 314/599 (52%), Positives = 412/599 (68%), Gaps = 42/599 (7%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KARAVAQETL +WCSLASRLG+W +KAELEDLCFAVL+PQ FR++R+ LA+MWS
Sbjct: 380 YALPAPKARAVAQETLAVWCSLASRLGVWTVKAELEDLCFAVLEPQTFRELRSGLAAMWS 439
Query: 67 PRNRVGYSRRITTIVSSPPLDERTAS-DDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 125
V + R++T L T S +DES ++ LSMKDLL+AV+PFD+LS R+
Sbjct: 440 VDEEVRHYRKMTKREKRRALIYGTESTEDESNEEIED--LSMKDLLDAVIPFDLLSGRKN 497
Query: 126 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 185
R K L S K+KV++D +AL +L CEEAL+KE+ IST YIPG EVTLS RL
Sbjct: 498 RGKQKFGLPPS---LSKSKVIEDTKVALAALSLCEEALDKEVAISTPYIPGTEVTLSGRL 554
Query: 186 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 245
KSLYS SKM+RK V + ++YDARALRVVVGD G LH AI+ CYSLLD+VHRLW+PI
Sbjct: 555 KSLYSTHSKMKRKGVHLDQIYDARALRVVVGDGGGKLHVAAIKGCYSLLDVVHRLWMPIS 614
Query: 246 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 305
GEFDDYI+NPKPSGYQSLHTAV+GPDG+ LEVQIRTQ MHE AE G AAHWLYKE+G +
Sbjct: 615 GEFDDYILNPKPSGYQSLHTAVRGPDGAPLEVQIRTQLMHEQAESGNAAHWLYKESGAPV 674
Query: 306 QSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS----LKMGHPVIRVEGSNLLAAV 361
+ +A + +D+ DTDL S+ +++ +P +R+EG +L AAV
Sbjct: 675 MT---------QALPTNGRDS------DTDLTPSSSTPSKQVQLRYPALRIEGGSLRAAV 719
Query: 362 IIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKC-WEAYARLYKKASDEWWCQPGHGD 420
+IRV+ G+ELLVAVS G A +V+ SF K W+ +A +Y K + WW PGHGD
Sbjct: 720 VIRVDHDGKELLVAVSSGEA---IVSG--ASFDDKDRWKIFAYMYSKVAKSWWFAPGHGD 774
Query: 421 WCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVD--- 477
W TCLEKY LC D +YHK+DQF R LPTF+Q+ L E EY V++ V EG ++
Sbjct: 775 WDTCLEKYVLCGDHIYHKKDQFHRPLPTFLQLLELDARELKEYMEVMTMVDEGIEIELQT 834
Query: 478 SVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVV 537
+ SS +++ S +NNKV+LLR+ML+WE+++ EA+ + +P S V
Sbjct: 835 QAGTSMSSQNLSSGSATTRLNNKVKLLRSMLQWEKEVHFEAA--------RHPDDPSSAV 886
Query: 538 PGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 596
EV+++ WPNG+I+R+ +GST +DAA ++G++ K++ VNGQL LP EL+DGD++EVR
Sbjct: 887 LTEVLVISWPNGDIVRMPAGSTVSDAAQRMGIDNKIMYVNGQLALPLVELRDGDVIEVR 945
>gi|147784360|emb|CAN72734.1| hypothetical protein VITISV_020261 [Vitis vinifera]
Length = 378
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/376 (69%), Positives = 302/376 (80%), Gaps = 19/376 (5%)
Query: 241 WIPIDGEFDDYIVNPKPSG---------YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 291
W+P D +N K G SLHTAVQGPD S LEVQIRTQ+MHEYAEHG
Sbjct: 3 WVPPKSISDMMFINYKGFGKSKRGVILWQNSLHTAVQGPDNSPLEVQIRTQRMHEYAEHG 62
Query: 292 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIR 351
LAAHWLYKET NKL S S +D+S+I+ASS S+D ++ N + D+FQKY SLK GHPV+R
Sbjct: 63 LAAHWLYKETENKLPSTSILDDSEIKASSYFSEDMENQNSVGDDVFQKYGSLKAGHPVLR 122
Query: 352 VEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDE 411
VEGS+LLAAV++RV+K GRELLVAVSFGLAASE VADRR SFQIK WEAYARLYKK SDE
Sbjct: 123 VEGSHLLAAVVVRVDKDGRELLVAVSFGLAASEAVADRRSSFQIKRWEAYARLYKKVSDE 182
Query: 412 WWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVF 471
WW +PGHGDWCTCLEKYTLCRDGMYHK+DQF RLLPTFIQ+ LTE+EESEYWAVVSA+F
Sbjct: 183 WWFEPGHGDWCTCLEKYTLCRDGMYHKEDQFQRLLPTFIQVIDLTEQEESEYWAVVSAIF 242
Query: 472 EGKPVDSVVS--------RRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQ- 522
EGK + S+ S R SS+ ++ TS+EA+INNKV LLRTML+WEEQLRSEA +RQ
Sbjct: 243 EGKQIASIESHSNSSFYKRPSSNPISSTSLEANINNKVHLLRTMLQWEEQLRSEAGMRQT 302
Query: 523 -SKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLV 581
+K+G P SVV GEVVIVCWP+GEIMRLR+GSTAADAA +VGL+GKLVLVNGQ V
Sbjct: 303 KTKVGADPYSTPKSVVLGEVVIVCWPHGEIMRLRTGSTAADAAQRVGLDGKLVLVNGQYV 362
Query: 582 LPNTELKDGDIVEVRV 597
LPNT+LKDGD+VEVR+
Sbjct: 363 LPNTQLKDGDVVEVRM 378
>gi|168004493|ref|XP_001754946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694050|gb|EDQ80400.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 667
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/496 (53%), Positives = 354/496 (71%), Gaps = 14/496 (2%)
Query: 107 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 166
+ +LL+AVVPF++LSDR++R + + +K KV++DA +AL +L ACEEALE+E
Sbjct: 174 LYELLQAVVPFEVLSDRKRRKWRI--VTPGPGEKKLPKVIRDAKVALAALSACEEALERE 231
Query: 167 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 226
LLI+TSY+PGMEV LS RLKSLYS + KMRRK VG+ +++DARALRV+VGD +G LH A
Sbjct: 232 LLIATSYVPGMEVRLSGRLKSLYSTWCKMRRKGVGVDQIFDARALRVIVGDGDGKLHVAA 291
Query: 227 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 286
++ CY+LL +VH LW P+ GEFDDYI+NPKPSGYQSLHTAVQGPDG+ LEVQIRT+ MH+
Sbjct: 292 VEGCYNLLSVVHSLWKPVGGEFDDYILNPKPSGYQSLHTAVQGPDGAPLEVQIRTRGMHD 351
Query: 287 YAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK-- 344
+AE+G AAHWLYKE +++ + M+ +++ S D D D +F K S +
Sbjct: 352 HAEYGHAAHWLYKEGDTVVKATTPMNPP-VDSPLPDSDDASD----DEQVFAKPSPRRPV 406
Query: 345 -MGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 403
MGHP +RVE LLAAVI+ V GRELLVA SF L A E VA R Q K W Y R
Sbjct: 407 YMGHPALRVEDGRLLAAVIVGVMDEGRELLVAASFALHAREAVAAGRFGNQRKRWLTYCR 466
Query: 404 LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEY 463
LYKK +D+WW PGHGDW TCLEKYTLCRDG+YHKQDQF R LPTFIQ+ L E E+ +Y
Sbjct: 467 LYKKVADQWWFAPGHGDWSTCLEKYTLCRDGLYHKQDQFDRSLPTFIQLLDLNESEQDDY 526
Query: 464 WAVVSAVFEGKPVDSVVSR---RSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASL 520
W V+S V +G+ VD V + +D + TS +NNKV+LLR+ML+WE++LR E +
Sbjct: 527 WKVMSMVEQGEEVDIFVDNAADQHNDLGSGTSTTTRLNNKVKLLRSMLQWEQELRHEVAP 586
Query: 521 RQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQL 580
S + +P++ EV+++ WP+G+IMR+ +GSTAAD A ++G++G++V +N Q
Sbjct: 587 DGSVTILNPD-HPETAALVEVLVISWPDGDIMRMPAGSTAADLARRMGMDGEIVFINHQA 645
Query: 581 VLPNTELKDGDIVEVR 596
LP+T+L+DGD+VE R
Sbjct: 646 ALPHTKLRDGDLVETR 661
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 6 SYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 49
SYALP AKA AVAQETL +WCSLAS+LG WA+KAELEDLCFAVL
Sbjct: 131 SYALPEAKASAVAQETLAVWCSLASKLGEWAVKAELEDLCFAVL 174
>gi|302792310|ref|XP_002977921.1| hypothetical protein SELMODRAFT_152204 [Selaginella moellendorffii]
gi|300154624|gb|EFJ21259.1| hypothetical protein SELMODRAFT_152204 [Selaginella moellendorffii]
Length = 370
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/363 (57%), Positives = 257/363 (70%), Gaps = 25/363 (6%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YALP KARAVAQETL +WCSLASRLG+W +KAELEDLCFAVL+PQ FR++R+ LA+MWS
Sbjct: 27 YALPAPKARAVAQETLAVWCSLASRLGVWTVKAELEDLCFAVLEPQTFRELRSGLAAMWS 86
Query: 67 PRNRVGYSRRITTIVSSPPLDERTAS-DDESFTTFDEHVLSMKDLLEAVVPFDILSDRRK 125
V + R++T L T S +DES ++ LSMKDLL+AV+PFD+LS R+
Sbjct: 87 VDEEVRHYRKMTKREKRRALIYGTESTEDESNEEIED--LSMKDLLDAVIPFDLLSGRKN 144
Query: 126 RTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRL 185
R K L S K+KV++D +AL +L CEEAL+KE+ IST YIPG EVTLS RL
Sbjct: 145 RGKQKFGLPPS---LSKSKVIEDTKVALAALSLCEEALDKEVAISTPYIPGTEVTLSGRL 201
Query: 186 KSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPID 245
KSLYS SKM+RK V + ++YDARALRVVVGD G LH AI+ CYSLLD+VHRLW+PI
Sbjct: 202 KSLYSTHSKMKRKGVHLDQIYDARALRVVVGDGGGKLHVAAIKGCYSLLDVVHRLWMPIS 261
Query: 246 GEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 305
GEFDDYI+NPKPSGYQSLHTAV+GPDG+ LEVQIRTQ MHE AE G AAHWLYKE+G +
Sbjct: 262 GEFDDYILNPKPSGYQSLHTAVRGPDGAPLEVQIRTQLMHEQAESGNAAHWLYKESGAPV 321
Query: 306 QSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS----LKMGHPVIRVEGSNLLAAV 361
+ D+ + S DTDL S+ +++ +P +R+EG +L AAV
Sbjct: 322 MT------QDLPTNGRDS---------DTDLTPSSSTPSKQVQLRYPALRIEGGSLRAAV 366
Query: 362 IIR 364
+IR
Sbjct: 367 VIR 369
>gi|224126639|ref|XP_002319887.1| predicted protein [Populus trichocarpa]
gi|222858263|gb|EEE95810.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 130/150 (86%)
Query: 284 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSL 343
MHEYAEHGLAAHWLYKETGN L SI S DES+ EASS LSKD DD ++ D FQKY SL
Sbjct: 1 MHEYAEHGLAAHWLYKETGNTLSSIGSTDESETEASSYLSKDIDDQTSMEDDQFQKYRSL 60
Query: 344 KMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR 403
K GHPV+RVE S+LLAAVIIRVEKGGRELLVAVSFGLAASE VADRR SFQIK WEAYAR
Sbjct: 61 KAGHPVLRVERSHLLAAVIIRVEKGGRELLVAVSFGLAASEAVADRRSSFQIKQWEAYAR 120
Query: 404 LYKKASDEWWCQPGHGDWCTCLEKYTLCRD 433
LYKK SDEWWC+PGHGDWCTCLEKYT CRD
Sbjct: 121 LYKKVSDEWWCEPGHGDWCTCLEKYTFCRD 150
>gi|224126635|ref|XP_002319886.1| predicted protein [Populus trichocarpa]
gi|222858262|gb|EEE95809.1| predicted protein [Populus trichocarpa]
Length = 161
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 121/160 (75%), Positives = 136/160 (85%)
Query: 438 KQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASI 497
+QDQF RLLPTFIQ+ L EEEESEY AV+SAVFEGKPVDS+ SR + D+VA TSMEASI
Sbjct: 2 QQDQFERLLPTFIQVIDLMEEEESEYRAVLSAVFEGKPVDSIASRPNIDTVASTSMEASI 61
Query: 498 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 557
NNKVRLLRTML+WEEQLR EA L Q K K+ + +S GEVVIVCWP+GEI+RLRSG
Sbjct: 62 NNKVRLLRTMLQWEEQLRYEAILGQPKHERKSYSSLESGGLGEVVIVCWPHGEIIRLRSG 121
Query: 558 STAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
STAADAA +VG +GKLVLVNGQLVLPNTELKDGD+VEVRV
Sbjct: 122 STAADAARRVGFDGKLVLVNGQLVLPNTELKDGDVVEVRV 161
>gi|384245712|gb|EIE19205.1| hypothetical protein COCSUDRAFT_59689 [Coccomyxa subellipsoidea
C-169]
Length = 880
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 176/501 (35%), Positives = 247/501 (49%), Gaps = 94/501 (18%)
Query: 109 DLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELL 168
+L++ V+PF ++ R + +S+ Q +A AL L C L EL
Sbjct: 453 ELIQTVLPFYAVTFR----------SGASQQQSRA--------ALDVLDKCAHRLLYELK 494
Query: 169 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 228
+ G++V + R+KSLYS++ KM RK V + +V+DA ALRVVV D+NG AI+
Sbjct: 495 ME-GLATGLDVHVEGRIKSLYSMYRKMIRKSVSLREVFDALALRVVVDDQNGFKMQRAIE 553
Query: 229 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 288
CY + VHRLW PI GE DDYI NPK SGYQSLH+AV GP G +EVQIRT MHE A
Sbjct: 554 ACYEIQPAVHRLWRPIRGELDDYIFNPKASGYQSLHSAVIGPAGVPMEVQIRTSSMHEIA 613
Query: 289 EHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHP 348
E+G AAHW YK+T + + ++A +S S DT +K+G P
Sbjct: 614 EYGAAAHWAYKDTPH----------APVQAGASTSGDT----------------IKVGQP 647
Query: 349 VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR-PSFQIKCWEAYARLYKK 407
++RV L V++ +E G +LVAV + S V+ D Q+K AY R K
Sbjct: 648 MVRVLRGKLQLGVVVDIE--GDRMLVAV---VVPSRVMPDTSIDKNQVKTVLAYVRRKK- 701
Query: 408 ASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVV 467
+W PGHGD LE Y LC+DG +H D + + P F+ +
Sbjct: 702 ----FWA-PGHGDLHLSLESYMLCKDGYWHLVDSYDQKQPPFVMPLQNVQ---------- 746
Query: 468 SAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGG 527
K D V + TS EA K RLLR ML W+ L + + + G
Sbjct: 747 ------KGFDGVKGKAKL-----TSAEA---RKARLLRRMLEWQRDLLGDPDGMEGEAGS 792
Query: 528 KANGNPDSVVP--GEVVIVCWPNGEIMRLRSGSTAADAAMKVGL-----EG------KLV 574
+ + ++ +P +V ++ P G+I ++ G+TA D + G EG +LV
Sbjct: 793 GGSSSGNAPIPQSSQVQVLIVPTGKIEQVERGTTAGDIIRQKGRIEIEEEGRRHIGPRLV 852
Query: 575 LVNGQLVLPNTELKDGDIVEV 595
VN LV +T L DGD V +
Sbjct: 853 NVNNHLVPESTPLGDGDWVSL 873
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 49/59 (83%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 65
+AL P + RAVA ET+ +WCSLA RLG+++LK+ELEDLCFAV+ P+ +R +R++L ++W
Sbjct: 204 FALRPDRQRAVALETMQVWCSLAERLGMYSLKSELEDLCFAVMHPREYRALRSELDTIW 262
>gi|308810138|ref|XP_003082378.1| putative relA/spoT homologous protein RSH2 (ISS) [Ostreococcus
tauri]
gi|116060846|emb|CAL57324.1| putative relA/spoT homologous protein RSH2 (ISS) [Ostreococcus
tauri]
Length = 850
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 194/667 (29%), Positives = 306/667 (45%), Gaps = 129/667 (19%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP----- 67
KA +A ETL +WCSLA +LG+WA+K+ELEDLCFAVL+P F +R MW P
Sbjct: 215 KAMDIANETLRVWCSLAEKLGMWAIKSELEDLCFAVLEPDNFDSVREARDKMWRPIYEDE 274
Query: 68 ------RNRVGYSRRITTIVSSPPLDERTA-------SDDESFTTFDEHVLSMKDLLEAV 114
N G+ + + P + SDD + + L+MK +E++
Sbjct: 275 DEGLDSENSYGWLSKSFGVSKLPFFNAEETNASGSFDSDDSPSVQYTQAQLAMKMRIESI 334
Query: 115 VPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 174
FD +S R S + +++ + +L +L + ELL+ Y
Sbjct: 335 PSFDWISTRE---------GDSLRYDRMSELPESIAASLNTLDEVRGRIWSELLMD-GYD 384
Query: 175 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA--IQCCYS 232
+ +++SSRLKS YS KM+RK + ++V DARA+R+VVGD + + G + CY+
Sbjct: 385 SDLNISMSSRLKSAYSTHQKMKRKGLPFNRVCDARAMRIVVGDPSASAGGTEREVDACYA 444
Query: 233 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 292
LLD++H+++ PI+GE+DDYI+NPK +GY+SLHTAV GPDG+ EVQ+RT+ MH+ AE G+
Sbjct: 445 LLDLIHKMYRPIEGEYDDYIINPKQTGYRSLHTAVNGPDGAPFEVQVRTRSMHDSAEFGM 504
Query: 293 AAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKMGHPVIRV 352
AA W+YK G + S + ++L+ D D +G V V
Sbjct: 505 AAQWMYK--GKATYASKSYQD------AALTDDVPD----------------VGAGVQLV 540
Query: 353 EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQIKCWEAYAR----LYKKA 408
V+I + GG +LVA S+VVA + + E L ++
Sbjct: 541 SSGRRSCGVVI--QSGGSRMLVAEPKQAQWSDVVAWMSEGYHKQLLEEVRESGLMLARQG 598
Query: 409 SDEWWCQPGHGDWCTCLEKYTLCRDGMYHK------------------------------ 438
+ E++ ++C C+++ D + HK
Sbjct: 599 TSEFFI----SEFCYCVDQRWHRVDNLGHKTRVTAEIVAKRLEMSNAEFGEEFGEEMDDI 654
Query: 439 -------QDQFGRLLPTFIQITHLTEEEESEYWAVVSAV------FEGKPVDSVVSRR-- 483
Q G LL + L E E + A V A+ + + + +R
Sbjct: 655 DARIRQLQTIAGDLLNDSTASSILQETELGNWSATVQAIKKRERAMQARQSQAEREKRWR 714
Query: 484 --SSDSVAPTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEV 541
+ ++ A + + AS K + + + EE + EA + S KAN +P+ V V
Sbjct: 715 TGAEEAPALSILMASSALKAKPAAGIFQTEEAAKFEAEVALS--SPKAN-HPNIDVEDGV 771
Query: 542 VIVCWPNG--EIMRLRSGSTAADAAM---KVGLEGKL----------VLVNGQLVLPNTE 586
+I+ W + E+ ++ GST A+ K+ E +L V VN +V P T
Sbjct: 772 MIITWTDNYPELHSIKRGSTVAEIREIIDKIPGEKRLAPPKVESDESVNVNMVMVPPTTT 831
Query: 587 LKDGDIV 593
LKDGD++
Sbjct: 832 LKDGDMI 838
>gi|307103379|gb|EFN51640.1| hypothetical protein CHLNCDRAFT_59199 [Chlorella variabilis]
Length = 1290
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 246/515 (47%), Gaps = 87/515 (16%)
Query: 105 LSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGI--ALTSLVACEEA 162
L K L++ V+PFD T F AK+ AG L L AC +
Sbjct: 745 LQAKLLIDTVLPFDA-------TTF-----------NIAKLRSGAGALRGLEVLQACAQL 786
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L +E+ + S G+EV++ RLKSLYS F KM RK V + +VYDARALRVVV D G
Sbjct: 787 LMREI-GTESLASGLEVSVQGRLKSLYSTFRKMSRKAVPLSEVYDARALRVVVDDDGGRR 845
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
AI CY LL VHRL+ + GE DDYI PKPSGYQSLHTAV GP G +EVQ+RT
Sbjct: 846 QAEAIAACYKLLPAVHRLFRRVAGEEDDYIAQPKPSGYQSLHTAVIGPGGVPMEVQMRTS 905
Query: 283 KMHEYAEHGLAAHWLYKE---------TGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 333
MH AE+G AAHW YKE G S+ + + + S+ + + D D
Sbjct: 906 SMHSDAEYGKAAHWAYKEKPAVPAVQLPGPAAPSLPAPSSASTSSGSATTSGSVDDE--D 963
Query: 334 TDLFQKYSSLKMGHPVIRV-EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 392
D + + GHP++ + G L V++ E GGR LL AVS V D RP+
Sbjct: 964 GD-----AGIAAGHPMLHIGPGGRLRDGVVVASEFGGRRLLCAVS---QEQRAVPDARPA 1015
Query: 393 FQIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQI 452
E Y L + + + QP GD +E +TLC DG YH+ D+FG LPT +
Sbjct: 1016 PA----ERYRALLRYVEERGYFQPSQGDMTAAMELFTLCSDGKYHRIDRFGHKLPTVVVP 1071
Query: 453 THLTEEEESEYWAVVSAVFEGKPVDSVVSR------------------RSSDSVAPTSME 494
L EEEE+ A S++ + RS SV M+
Sbjct: 1072 LTLEEEEEAASAADASSLSGSAAAAVAGAAGSEGAAGGGGAGPAPEHIRSQSSVE-GEMD 1130
Query: 495 ASINNKVRLLRTMLRWEEQL----RSEASLRQS----------------KLGGKANGNPD 534
+NN++ LLR+ML W +L +E++L Q +L + G
Sbjct: 1131 -YMNNRIPLLRSMLEWGRELGASIAAESALAQEAAAGNDAAAIAAWTERQLAPQVQGADG 1189
Query: 535 SVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGL 569
+ +V+++ WP G I+R+ G+TA +GL
Sbjct: 1190 AGA--DVMVLIWPGGRILRVPRGTTAGTVIRDLGL 1222
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 65
+AL P K +AVA ET +WCSLA RLG++A+K+ELEDLCFAVLQP +R +R L +W
Sbjct: 519 FALSPEKQQAVASETRRVWCSLAERLGMFAVKSELEDLCFAVLQPAEYRALRRQLDELW 577
>gi|145353023|ref|XP_001420831.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581066|gb|ABO99124.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 890
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 191/339 (56%), Gaps = 39/339 (11%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR-- 70
KA +A ETL +WCSLA +LG+WA+K+ELEDLCFAVL P+ F + + W PR +
Sbjct: 247 KAMDIANETLRVWCSLAEKLGMWAIKSELEDLCFAVLDPENFDGIMTARSKAWKPRAKDM 306
Query: 71 ------VGYSRRITTIVSSPP----LD--------ERTASD--DESFTTFDEHV----LS 106
S++ SSP LD E T SD D S + D+ L
Sbjct: 307 SGRARSSSKSKQTGQTESSPSSFFGLDAVSFFGAKEETESDSFDGSGSHDDDRYAPWQLD 366
Query: 107 MKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKE 166
+K +E++ FD LS R S + + + +L++L A L E
Sbjct: 367 VKHRIESIPSFDWLSTRE---------GDSLQVEGLTALPGSIAASLSTLDAIRGRLWSE 417
Query: 167 LLIST-SYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
LL+ + + +++SSRLKS YS + KM+RK++ +V D RA+R+VVGD + + G
Sbjct: 418 LLMDGYTTQSDLNISVSSRLKSAYSTYMKMKRKNLPFERVCDTRAMRIVVGDASTSERGT 477
Query: 226 A--IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 283
I CY+LLD++H+++ PI+GE+DDYI N K +GY+SLHTA+ GPDG+ LEVQ+RT+
Sbjct: 478 EREIDACYALLDLIHKMYRPIEGEYDDYITNAKKTGYRSLHTAIGGPDGAPLEVQVRTRS 537
Query: 284 MHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL 322
MH+ AE G+AA W+YK K S S D S + + S+
Sbjct: 538 MHDAAEFGVAAQWMYKGK-PKFASKSYQDASHTDETPSV 575
>gi|424513407|emb|CCO66029.1| GTP pyrophosphokinase [Bathycoccus prasinos]
Length = 1103
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 177/351 (50%), Gaps = 69/351 (19%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
YAL P KA VA ETL +WCS A +LG+W +K+ELED+CFAVL+P+ F ++ W
Sbjct: 391 YALDPRKAETVADETLRVWCSFAEKLGIWTVKSELEDMCFAVLEPERFEEIVQSRDDFWL 450
Query: 67 PRNRVGYSR--RITTIVSSPPLDERTASD-----------------------------DE 95
++ G R ++ +ER + D
Sbjct: 451 EESKRGRFRGKNFRGTIAPELQEERNEKEKAEKEALAFKTNQNKNNYVMMDALDETERDP 510
Query: 96 SFTTFDEHVLSMKDLLEAVVPFDILSDR-----RKRTKFLHDLAKSSEAQKKAKVVQDAG 150
S+T +E +++ L+ V PF+ L+ R R K L + +K
Sbjct: 511 SWTRLNETQRALRRRLQCVQPFEALTTRDGGAMRIDEKVLRESPMRPATKK--------- 561
Query: 151 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 210
+L +L + + + L + + + V +SSRLKSL+S KM+RK+V +VYD RA
Sbjct: 562 -SLEALAQWQNKMFQALRLD-GVVLNVNVRMSSRLKSLFSTSEKMKRKNVPFSEVYDGRA 619
Query: 211 LRVVVGD----KNGTLHGPA------------------IQCCYSLLDIVHRLWIPIDGEF 248
R+++GD T G I+ CY+LL+ VH++ PI+GE+
Sbjct: 620 TRIIIGDPVSASTMTSDGEGSASEFFDKDKLDSGLPSEIEACYALLNAVHKINRPINGEY 679
Query: 249 DDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
DDYI PK SGY+SLHTAV G DG LEVQIRT+ MH+ AE G+AAHWLYK
Sbjct: 680 DDYITKPKKSGYKSLHTAVLGDDGKPLEVQIRTRGMHDAAEWGVAAHWLYK 730
>gi|159885638|dbj|BAF93196.1| putative relA/spoT homologous protein RSH2 [Hordeum vulgare]
Length = 139
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/150 (60%), Positives = 111/150 (74%), Gaps = 20/150 (13%)
Query: 222 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 281
LHGPA + CY++LDIVHRLW PIDGEFDDYI+NPK SGYQSLHTAVQ D S LEVQIRT
Sbjct: 1 LHGPAARSCYNILDIVHRLWTPIDGEFDDYIINPKGSGYQSLHTAVQASDSSPLEVQIRT 60
Query: 282 QKMHEYAEHGLAAHWLYKET--------GNKLQSISSMDESDIEASSSLSKDTDDHNPLD 333
Q+MHEYAE+GLAAHWLYKE+ GNK++ +S + ASSS + D P
Sbjct: 61 QRMHEYAEYGLAAHWLYKESNVNTGSGMGNKIK------QSTLYASSSSEDEITDGVP-- 112
Query: 334 TDLFQKYSSLKMGHPVIRVEGSNLLAAVII 363
KY S+K+GHPV+R++G++LLAAVI+
Sbjct: 113 ----SKYISMKVGHPVLRIDGNHLLAAVIV 138
>gi|255080932|ref|XP_002504032.1| predicted protein [Micromonas sp. RCC299]
gi|226519299|gb|ACO65290.1| predicted protein [Micromonas sp. RCC299]
Length = 1340
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 189/381 (49%), Gaps = 44/381 (11%)
Query: 107 MKDLLEAVVPFDIL--SDRRKRTKFLHDLAKSSEAQKKAK-------VVQDAGI--ALTS 155
+K LL V PFD+L S+R RT A + + A V A + +L S
Sbjct: 582 LKALLACVPPFDLLQASERNSRTAAAAAAAMMAADEATAATAADGRPTVGGASLDASLRS 641
Query: 156 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 215
L C+ + L + S PG+ V ++ RLKS +S KMRRK++ +V DARALR+V+
Sbjct: 642 LRQCQATTMRSLQLD-SLAPGLRVEITGRLKSAHSTHLKMRRKNIDFGQVCDARALRIVI 700
Query: 216 GDKNGTLHGPA--IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 273
G+ G G ++ CY++++ +H+L+ + GE+DDY+ N K SGYQSLHTAV GPDG+
Sbjct: 701 GEP-GEAPGTKDEVEACYAVVNAIHKLYRAVPGEYDDYVANKKRSGYQSLHTAVTGPDGA 759
Query: 274 ALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI-----------EASSSL 322
LE Q+RT+ MHE AE G AAHWLYK+ N ++ + DES I +
Sbjct: 760 LLEFQVRTRAMHEAAEFGDAAHWLYKDFINAVKRRPN-DESAIGGDGGGGGPEDVDVVAA 818
Query: 323 SKDTDDHNPL-DTDLFQKYSSLKMGHPVIRV------EGSNLLAAVIIRVEKGGRELLVA 375
+P +T++ + Y +G PV V G L+A ++ +G R +V
Sbjct: 819 GVARARASPTAETNVDRSY----VGQPVQIVWDVGTSGGGGRLSAGVVCFAEGSRIHVVE 874
Query: 376 VSFGLAASEVVADRRPSFQIKCWEAYARLYKKASDEW----WCQPGHGDWCTCLEKYTLC 431
G + V + + W A L++ A D +P + ++ LC
Sbjct: 875 PRRGDVLAPGVGSTGLA-ETAEWVAMG-LHRDALDRAVRANRVEPRQNGPGYLVLEFALC 932
Query: 432 RDGMYHKQDQFGRLLPTFIQI 452
DG +HK D F R L T ++
Sbjct: 933 SDGRWHKVDAFDRKLATTAEL 953
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
YA+ AK++ VA ETL +WCS A +LG++ KAE+EDL FAV+ P FR +
Sbjct: 389 YAVNSAKSKFVANETLQVWCSFAEQLGMFGAKAEMEDLSFAVVNPDAFRAV 439
>gi|303271107|ref|XP_003054915.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462889|gb|EEH60167.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 328
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 12/177 (6%)
Query: 130 LHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLY 189
+ DLA + + + + +A +L +L +C +A + L + + PG+ V ++ RLKS Y
Sbjct: 158 MEDLAFAVKDPDAFRAIINARASLNALASCRDACMRSLQLD-AIAPGLRVDITGRLKSAY 216
Query: 190 SIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------IQCCYSLLDIVHRLWIP 243
S KM RK + V DARALRVV+G+ GPA ++ C+ LL+ +H+L+ P
Sbjct: 217 STHLKMARKKIPFGAVCDARALRVVIGEP-----GPAPGTKDEVEACFVLLEAIHKLYRP 271
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ GE+DDY+ N K SGYQSLHTAV GPDG+ LEVQ+RT+ MH+ AE G AAHW+YK+
Sbjct: 272 VPGEYDDYVTNVKASGYQSLHTAVTGPDGALLEVQVRTRAMHDAAEFGDAAHWIYKD 328
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM---RADLAS 63
YA+ P KAR VA ETL +WC ++ LGL AE+EDL FAV P FR + RA L +
Sbjct: 124 YAVKPEKARFVANETLQVWCPVSEALGLLGANAEMEDLAFAVKDPDAFRAIINARASLNA 183
Query: 64 MWSPRNRVGYSRRITTI 80
+ S R+ S ++ I
Sbjct: 184 LASCRDACMRSLQLDAI 200
>gi|187924733|ref|YP_001896375.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia phytofirmans PsJN]
gi|187715927|gb|ACD17151.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia phytofirmans PsJN]
Length = 747
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAN-----IRAEVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAGTR 357
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL +P ++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLALRFEEPVTYKRI 208
>gi|209516676|ref|ZP_03265529.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. H160]
gi|209502951|gb|EEA02954.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. H160]
Length = 747
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 130 LHDLA----KSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA + + ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPNTYKRIAKLLDEKRVERESYVAQAIERLQQELAAAQ-----IRAEVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR KD+ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKDLNFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F +P ++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLAFRFEEPNTYKRI 208
>gi|91784429|ref|YP_559635.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia xenovorans LB400]
gi|91688383|gb|ABE31583.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia xenovorans LB400]
Length = 747
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAH-----IRAEVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAGTR 357
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL +P ++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLALRFEEPVTYKRI 208
>gi|427402162|ref|ZP_18893234.1| RelA/SpoT family protein [Massilia timonae CCUG 45783]
gi|425718935|gb|EKU81876.1| RelA/SpoT family protein [Massilia timonae CCUG 45783]
Length = 746
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 108/165 (65%), Gaps = 15/165 (9%)
Query: 140 QKKAKVVQDAGIALTSLVACEEA-LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 198
++ A+++++ ++ S VA A L+ EL + G++ +S R K +YSI+SKMR K
Sbjct: 215 KRIARMLEEKRMSRESFVASSIARLQSELAAA-----GIKADVSGRPKHIYSIWSKMRGK 269
Query: 199 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 258
++ ++YD RA RV+V D I+ CY++L ++H +W P+ EFDDYI PKP+
Sbjct: 270 ELDFSELYDVRAFRVIVAD---------IKTCYTVLGVIHNIWTPVPKEFDDYISRPKPN 320
Query: 259 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
GY+SLHT V DG LEVQIRTQ+MH +AE+G+AAHW YKE G
Sbjct: 321 GYRSLHTVVTADDGRPLEVQIRTQEMHNFAEYGIAAHWRYKEEGG 365
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA +E L + LA+RLG+W LK ELEDL F ++P ++++
Sbjct: 175 RAYGREVLDFYAPLANRLGIWQLKWELEDLAFRFIEPDTYKRI 217
>gi|323526737|ref|YP_004228890.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1001]
gi|323383739|gb|ADX55830.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1001]
Length = 747
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + + S VA E L++EL + G+ +S R
Sbjct: 192 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQRELAAA-----GIRAEVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHQFAEYGVAAHWRYKEAGAR 357
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F +P +++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLAFRFEEPVVYKRI 208
>gi|237746845|ref|ZP_04577325.1| GTP pyrophosphokinase [Oxalobacter formigenes HOxBLS]
gi|229378196|gb|EEO28287.1| GTP pyrophosphokinase [Oxalobacter formigenes HOxBLS]
Length = 754
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI++KMR K + ++YD RA RV+V D I+ C+++LD
Sbjct: 255 GIKADVTGRPKHIYSIYNKMRGKSLDFSRMYDLRAFRVIVSD---------IKTCFTVLD 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+HRLW PI EFDDYI PKP+GYQSLHT V +G EVQIRTQ+MH AE G+AAH
Sbjct: 306 IIHRLWTPILKEFDDYISRPKPNGYQSLHTVVVSENGQPFEVQIRTQEMHRLAEFGVAAH 365
Query: 296 WLYKETG 302
W YKETG
Sbjct: 366 WRYKETG 372
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+R A+ETL I+ LA+RLG+W +K ELEDL F + P+ +R + +L + R
Sbjct: 182 SRHYAKETLEIYAPLANRLGIWQVKWELEDLAFRFIDPEAYRTIAKNLEEKRTER 236
>gi|416908762|ref|ZP_11931227.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. TJI49]
gi|325528728|gb|EGD05798.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. TJI49]
Length = 744
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L++EL + ++IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQEL--AQAHIPA---DVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ MH +AE+G+AAHW YKE G +
Sbjct: 333 TQDMHRFAEYGVAAHWRYKEAGTR 356
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 167 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|407714183|ref|YP_006834748.1| GTP pyrophosphokinase [Burkholderia phenoliruptrix BR3459a]
gi|407236367|gb|AFT86566.1| GTP pyrophosphokinase [Burkholderia phenoliruptrix BR3459a]
Length = 728
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 112/180 (62%), Gaps = 19/180 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + + S VA E L++EL + G+ +S R
Sbjct: 173 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQRELAAA-----GIRAEVSGR 227
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 228 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 278
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH++AE+G+AAHW YKE G +
Sbjct: 279 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHQFAEYGVAAHWRYKEAGAR 338
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F +P +++++
Sbjct: 149 VARETLDIYAPLANRLGIWQLKWELEDLAFRFEEPVVYKRI 189
>gi|385208783|ref|ZP_10035651.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. Ch1-1]
gi|385181121|gb|EIF30397.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. Ch1-1]
Length = 747
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 111/178 (62%), Gaps = 19/178 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + + S VA E L+KEL + + +S R
Sbjct: 192 LEDLALRFEEPVTYKRIAKLLDEKRVERESYVAQAIERLQKELAAAH-----IRAEVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE G
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKEAG 355
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL +P ++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLALRFEEPVTYKRI 208
>gi|170701133|ref|ZP_02892107.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria IOP40-10]
gi|170133955|gb|EDT02309.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria IOP40-10]
Length = 740
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 108/166 (65%), Gaps = 15/166 (9%)
Query: 140 QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 198
++ AK++ + I + VA E L+ EL + ++IP +S R K +YSI+ KMR K
Sbjct: 205 KRIAKLLDEKRIEREAYVAQAIERLQHEL--AEAHIPA---DVSGRPKHIYSIWRKMRGK 259
Query: 199 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 258
++ ++YD RA RV+V P I+ CY++L IVH LW P+ EFDDYI PKP+
Sbjct: 260 ELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPN 310
Query: 259 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 311 GYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 356
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 167 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|238027732|ref|YP_002911963.1| GTP diphosphokinase [Burkholderia glumae BGR1]
gi|237876926|gb|ACR29259.1| GTP diphosphokinase [Burkholderia glumae BGR1]
Length = 742
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E LE+EL + + IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 224 ERLEREL--AAAQIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 273
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 274 ----PDIKDCYAVLGIVHHLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 329
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 330 TQEMHRFAEYGVAAHWRYKEAGAR 353
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 164 VARETLDIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 204
>gi|115351411|ref|YP_773250.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia ambifaria AMMD]
gi|115281399|gb|ABI86916.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria AMMD]
Length = 739
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 108/166 (65%), Gaps = 15/166 (9%)
Query: 140 QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 198
++ AK++ + I + VA E L+ EL + ++IP +S R K +YSI+ KMR K
Sbjct: 204 KRIAKLLDEKRIEREAYVAQAIERLQHEL--AEAHIPA---DVSGRPKHIYSIWRKMRGK 258
Query: 199 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 258
++ ++YD RA RV+V P I+ CY++L IVH LW P+ EFDDYI PKP+
Sbjct: 259 ELDFAELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPN 309
Query: 259 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 310 GYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHWRYKEAGAR 355
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|167836853|ref|ZP_02463736.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
gi|424904162|ref|ZP_18327672.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
gi|390930140|gb|EIP87542.1| GTP pyrophosphokinase [Burkholderia thailandensis MSMB43]
Length = 747
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L++EL + +IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 228 ERLQREL--AAVHIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 277
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 278 ----PDIRDCYTVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 333
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 334 TQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|330816668|ref|YP_004360373.1| GTP diphosphokinase [Burkholderia gladioli BSR3]
gi|327369061|gb|AEA60417.1| GTP diphosphokinase [Burkholderia gladioli BSR3]
Length = 744
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 14/142 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
LE+EL + + IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 228 LEQEL--AAAQIPA---EVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV------- 275
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ
Sbjct: 276 --PDIKDCYAVLGIVHHLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQ 333
Query: 283 KMHEYAEHGLAAHWLYKETGNK 304
+MH +AE+G+AAHW YKE G +
Sbjct: 334 EMHRFAEYGVAAHWRYKEAGTR 355
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|402566725|ref|YP_006616070.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cepacia GG4]
gi|402247922|gb|AFQ48376.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cepacia GG4]
Length = 744
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 109/166 (65%), Gaps = 15/166 (9%)
Query: 140 QKKAKVVQDAGIALTSLVACEEALEK-ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 198
++ AK++ + I + VA EA+E+ + ++ ++IP +S R K +YSI+ KMR K
Sbjct: 205 KRIAKLLDEKRIEREAYVA--EAIERLQHELAEAHIPA---DVSGRPKHIYSIWRKMRGK 259
Query: 199 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 258
++ ++YD RA RV+V P I+ CY++L IVH LW P+ EFDDYI PKP+
Sbjct: 260 ELDFSELYDVRAFRVIV---------PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPN 310
Query: 259 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
GY+SLHT V G DG A EVQIRTQ MH +AE+G+AAHW YKE G +
Sbjct: 311 GYKSLHTVVIGDDGRAFEVQIRTQDMHRFAEYGVAAHWRYKEAGAR 356
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 167 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|134295546|ref|YP_001119281.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia vietnamiensis G4]
gi|387902065|ref|YP_006332404.1| GTP pyrophosphokinase [Burkholderia sp. KJ006]
gi|134138703|gb|ABO54446.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia vietnamiensis G4]
gi|387576957|gb|AFJ85673.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Burkholderia sp.
KJ006]
Length = 744
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 107/164 (65%), Gaps = 15/164 (9%)
Query: 140 QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 198
++ AK++ + I + VA E L+ EL + ++IP +S R K +YSI+ KMR K
Sbjct: 205 KRIAKLLDEKRIEREAYVAQAIERLQHEL--AQAHIPA---DVSGRPKHIYSIWRKMRGK 259
Query: 199 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 258
++ ++YD RA RV+V P I+ CY++L IVH LW P+ EFDDYI PKP+
Sbjct: 260 ELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHHLWQPVPKEFDDYISRPKPN 310
Query: 259 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G
Sbjct: 311 GYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAG 354
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 167 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|221197732|ref|ZP_03570778.1| GTP diphosphokinase [Burkholderia multivorans CGD2M]
gi|221204710|ref|ZP_03577727.1| RelA/SpoT family protein [Burkholderia multivorans CGD2]
gi|221214905|ref|ZP_03587873.1| GTP diphosphokinase [Burkholderia multivorans CGD1]
gi|421467902|ref|ZP_15916483.1| RelA/SpoT family protein [Burkholderia multivorans ATCC BAA-247]
gi|221165132|gb|EED97610.1| GTP diphosphokinase [Burkholderia multivorans CGD1]
gi|221175567|gb|EEE07997.1| RelA/SpoT family protein [Burkholderia multivorans CGD2]
gi|221181664|gb|EEE14065.1| GTP diphosphokinase [Burkholderia multivorans CGD2M]
gi|400232987|gb|EJO62569.1| RelA/SpoT family protein [Burkholderia multivorans ATCC BAA-247]
Length = 744
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PP + VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 163 PPPE---VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPITYKRI 207
>gi|161524953|ref|YP_001579965.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia multivorans ATCC
17616]
gi|189350299|ref|YP_001945927.1| GTP pyrophosphokinase [Burkholderia multivorans ATCC 17616]
gi|160342382|gb|ABX15468.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia multivorans ATCC
17616]
gi|189334321|dbj|BAG43391.1| GTP pyrophosphokinase [Burkholderia multivorans ATCC 17616]
Length = 744
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PP + VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 163 PPPE---VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPITYKRI 207
>gi|421475885|ref|ZP_15923817.1| RelA/SpoT family protein [Burkholderia multivorans CF2]
gi|400229518|gb|EJO59365.1| RelA/SpoT family protein [Burkholderia multivorans CF2]
Length = 744
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L++EL + ++ +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQQELAAAN-----VQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGVAAHWRYKEAGTR 356
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PP + VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 163 PPPE---VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPITYKRI 207
>gi|171318441|ref|ZP_02907596.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MEX-5]
gi|171096355|gb|EDT41257.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MEX-5]
Length = 740
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L+ EL + ++IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQHEL--AEAHIPA---DVSGRPKHIYSIWRKMRGKELDFAELYDVRAFRVIV----- 276
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 333 TQEMHRFAEYGIAAHWRYKEAGAR 356
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
V +ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 167 VGRETLDIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|172060450|ref|YP_001808102.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia ambifaria MC40-6]
gi|171992967|gb|ACB63886.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia ambifaria MC40-6]
Length = 739
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L+ EL + ++IP +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 226 ERLQHEL--AEAHIPA---DVSGRPKHIYSIWRKMRGKELDFAELYDVRAFRVIV----- 275
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 276 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 331
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ+MH +AE+G+AAHW YKE G +
Sbjct: 332 TQEMHRFAEYGIAAHWRYKEAGAR 355
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|83644638|ref|YP_433073.1| GTP pyrophosphokinase [Hahella chejuensis KCTC 2396]
gi|83632681|gb|ABC28648.1| GTP pyrophosphokinase [Hahella chejuensis KCTC 2396]
Length = 746
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 96/146 (65%), Gaps = 14/146 (9%)
Query: 162 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 221
AL +EL S G++ LS R K +YSI+ KM RK + +VYD RA+R++V
Sbjct: 247 ALRQELEAS-----GIKAELSGRAKHIYSIWRKMHRKGIDFSQVYDIRAIRILV------ 295
Query: 222 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 281
P+I+ CYS L +VH LW I EFDDYI NPK +GYQSLHTAV GP G +EVQIRT
Sbjct: 296 ---PSIRDCYSALGVVHALWRHIPHEFDDYIANPKQNGYQSLHTAVVGPSGKIMEVQIRT 352
Query: 282 QKMHEYAEHGLAAHWLYKETGNKLQS 307
QKMHE AE G+ AHWLYK T + +S
Sbjct: 353 QKMHEEAELGVCAHWLYKGTDTQQKS 378
>gi|241663243|ref|YP_002981603.1| (p)ppGpp synthetase I SpoT/RelA [Ralstonia pickettii 12D]
gi|240865270|gb|ACS62931.1| (p)ppGpp synthetase I, SpoT/RelA [Ralstonia pickettii 12D]
Length = 741
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 286 EYAEHGLAAHWLYKETGNK 304
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 170 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRI 211
>gi|420251756|ref|ZP_14754917.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. BT03]
gi|398057279|gb|EJL49251.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderia sp. BT03]
Length = 747
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 240 INAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 290
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW
Sbjct: 291 VHNLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHW 350
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 351 RYKEAGTR 358
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL +PQ ++++
Sbjct: 169 VARETLDIYAPLANRLGIWQLKWELEDLALRFEEPQTYKRI 209
>gi|390571447|ref|ZP_10251688.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia terrae BS001]
gi|389936550|gb|EIM98437.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia terrae BS001]
Length = 746
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 INAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW
Sbjct: 290 VHNLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHW 349
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 350 RYKEAGTR 357
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL +PQ ++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLALRFEEPQTYKRI 208
>gi|309782525|ref|ZP_07677249.1| GTP diphosphokinase [Ralstonia sp. 5_7_47FAA]
gi|404396238|ref|ZP_10988033.1| RelA/SpoT family protein [Ralstonia sp. 5_2_56FAA]
gi|308918862|gb|EFP64535.1| GTP diphosphokinase [Ralstonia sp. 5_7_47FAA]
gi|348614727|gb|EGY64266.1| RelA/SpoT family protein [Ralstonia sp. 5_2_56FAA]
Length = 741
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 286 EYAEHGLAAHWLYKETGNK 304
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 170 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRI 211
>gi|167562969|ref|ZP_02355885.1| GTP diphosphokinase [Burkholderia oklahomensis EO147]
gi|167570157|ref|ZP_02363031.1| GTP diphosphokinase [Burkholderia oklahomensis C6786]
Length = 748
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 107/166 (64%), Gaps = 15/166 (9%)
Query: 140 QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRK 198
++ AK++ + I + VA E L++EL + ++ +S R K +YSI+ KMR K
Sbjct: 206 KRIAKLLDEKRIEREAYVAEAIERLQRELAAAH-----IQAEVSGRPKHIYSIWRKMRGK 260
Query: 199 DVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPS 258
++ ++YD RA RV+V P I+ CY++L IVH LW P+ EFDDYI PKP+
Sbjct: 261 ELDFSELYDVRAFRVIV---------PDIKDCYTVLGIVHHLWQPVPKEFDDYISRPKPN 311
Query: 259 GYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 312 GYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PP A A+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 164 PPPDA---ARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|187929058|ref|YP_001899545.1| (p)ppGpp synthetase I SpoT/RelA [Ralstonia pickettii 12J]
gi|187725948|gb|ACD27113.1| (p)ppGpp synthetase I, SpoT/RelA [Ralstonia pickettii 12J]
Length = 741
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 9/139 (6%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E L T + G++ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 231 EQLQKTLHDAGIQAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 282
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH
Sbjct: 283 -IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMH 341
Query: 286 EYAEHGLAAHWLYKETGNK 304
+AE+G+AAHW YKE GNK
Sbjct: 342 HFAEYGVAAHWRYKEAGNK 360
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 170 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRI 211
>gi|359797514|ref|ZP_09300098.1| GTP pyrophosphokinase [Achromobacter arsenitoxydans SY8]
gi|359364625|gb|EHK66338.1| GTP pyrophosphokinase [Achromobacter arsenitoxydans SY8]
Length = 758
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 24/172 (13%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIDAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 MVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDE---------------SDIEASSSLSKDTDDHNPL 332
W YKE G K +S+ E SD+E + + DT P+
Sbjct: 362 WRYKEAGAKGGQVSASSEYDRQLAWMRQLLAWNSDVEGGAEAAPDTAKAAPV 413
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ETL ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 182 ARETLDLYAPLANRLGIWQIKWEMEDLSFRFLEPDKYKQI 221
>gi|311104723|ref|YP_003977576.1| GTP pyrophosphokinase [Achromobacter xylosoxidans A8]
gi|310759412|gb|ADP14861.1| GTP pyrophosphokinase [Achromobacter xylosoxidans A8]
Length = 755
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 93/140 (66%), Gaps = 9/140 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI++KMR K + ++YD RALR++V D G CY+ L
Sbjct: 251 GVEAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDDVRG---------CYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 MVHEMWTPISEEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESD 315
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ETL ++ LA+RLG+W +K E+EDL F L+P+ ++++
Sbjct: 182 ARETLDLYAPLANRLGIWQIKWEMEDLAFRFLEPEKYKQI 221
>gi|422323088|ref|ZP_16404128.1| GTP pyrophosphokinase [Achromobacter xylosoxidans C54]
gi|317401930|gb|EFV82535.1| GTP pyrophosphokinase [Achromobacter xylosoxidans C54]
Length = 652
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 140 GIEAEVSGRPKHIYSIWNKMRVKRLDFSQMYDLRALRIIVDD---------VRACYTALG 190
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 191 MVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 250
Query: 296 WLYKETGNKLQSISSMDESD 315
W YKE G K +++ E D
Sbjct: 251 WRYKEAGAKGGQVAASSEYD 270
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 69 AFARETLDLYAPLANRLGIWQIKWEMEDLAFRFLEPDRYKQI 110
>gi|409405788|ref|ZP_11254250.1| (p)ppGpp synthetase I [Herbaspirillum sp. GW103]
gi|386434337|gb|EIJ47162.1| (p)ppGpp synthetase I [Herbaspirillum sp. GW103]
Length = 750
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI++KMR K + ++YD RA RV+V D ++ CYS+L IVH +
Sbjct: 255 VSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDD---------VKTCYSVLGIVHNI 305
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI PK +GYQSLHT V DG ALEVQIRT +MH +AE+G+AAHW YKE
Sbjct: 306 WTPIPEEFDDYISRPKQNGYQSLHTVVMAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKE 365
Query: 301 TGNKLQSISSMDE 313
+G S DE
Sbjct: 366 SGGSNFSAQKYDE 378
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A++T ++ LA+RLG+W LK ELEDL F L+P ++++
Sbjct: 181 ARQTFDLYAPLANRLGIWQLKWELEDLSFRFLEPATYKRI 220
>gi|421482790|ref|ZP_15930370.1| GTP pyrophosphokinase [Achromobacter piechaudii HLE]
gi|400199101|gb|EJO32057.1| GTP pyrophosphokinase [Achromobacter piechaudii HLE]
Length = 764
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIEAEVSGRPKHIYSIWNKMRVKRLDFAQMYDLRALRIIVED---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLSDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESD 315
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 180 AFARETLDLYAPLANRLGIWQIKWEMEDLAFRFLEPDRYKQI 221
>gi|254514119|ref|ZP_05126180.1| GTP pyrophosphokinase [gamma proteobacterium NOR5-3]
gi|219676362|gb|EED32727.1| GTP pyrophosphokinase [gamma proteobacterium NOR5-3]
Length = 744
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 93/138 (67%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK +G +VYD RALR++V P ++ CY+ L
Sbjct: 257 GIEFEVSGRSKHIYSIWRKMQRKGIGFSQVYDIRALRILV---------PELKDCYATLG 307
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT +MHE AE G+ AH
Sbjct: 308 LVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTHEMHEEAELGVCAH 367
Query: 296 WLYKETGNKLQSISSMDE 313
W YK T K S SS DE
Sbjct: 368 WRYKGTDTKRGSGSSYDE 385
>gi|149927844|ref|ZP_01916095.1| RelA/SpoT protein [Limnobacter sp. MED105]
gi|149823466|gb|EDM82697.1| RelA/SpoT protein [Limnobacter sp. MED105]
Length = 764
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 101/171 (59%), Gaps = 17/171 (9%)
Query: 160 EEALEKELLISTSY--------IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
E+ +E+E I ++ + G+ +S R K +YSI++KMR K + K+YD RA
Sbjct: 234 EKRVEREAFIESAMASIKENLLLAGIHCEISGRPKHIYSIWNKMRGKGISFDKLYDVRAC 293
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RV+V + CY+ L IVH LW PI EFDDYI PKP+GYQSLHT VQ
Sbjct: 294 RVIVD---------TVDDCYTALGIVHNLWTPISEEFDDYISKPKPNGYQSLHTVVQDET 344
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL 322
G LEVQIRT+ MH++AE+G+AAHW YKE+G + S E E +L
Sbjct: 345 GKTLEVQIRTEAMHQFAEYGVAAHWRYKESGKDGYTGESRAEGQFEERIAL 395
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
AQETL ++ LA+RLGLW LK ELEDL F +LQP ++ +
Sbjct: 189 AQETLDLYAPLANRLGLWQLKWELEDLSFRILQPNTYKNV 228
>gi|319786299|ref|YP_004145774.1| RelA/SpoT family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317464811|gb|ADV26543.1| RelA/SpoT family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 722
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G +S R K +YSI+ KM++K + + K+YD RA+RV+V D + CY+ L
Sbjct: 230 GFTAEISGRPKHIYSIWRKMQKKQLPLDKLYDLRAVRVMVAD---------VAACYAALG 280
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ GEFDDYI PKP+GY SLHTAV GP+G LEVQIRT++MHE AE G+AAH
Sbjct: 281 VVHSLWAPVPGEFDDYIARPKPNGYASLHTAVVGPEGRTLEVQIRTREMHEQAELGVAAH 340
Query: 296 WLYKET 301
W YKET
Sbjct: 341 WRYKET 346
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
LP + RA+AQ T I LA+RLG+W LK ELEDL F L P +R++ +L +
Sbjct: 151 GLPGEERRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRFLDPDTYRRIAHELDESRAD 210
Query: 68 RNR 70
R R
Sbjct: 211 RER 213
>gi|167816074|ref|ZP_02447754.1| GTP pyrophosphokinase [Burkholderia pseudomallei 91]
gi|418387544|ref|ZP_12967400.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354a]
gi|418553592|ref|ZP_13118411.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354e]
gi|385371430|gb|EIF76609.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354e]
gi|385376264|gb|EIF80962.1| GTP pyrophosphokinase [Burkholderia pseudomallei 354a]
Length = 745
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|121599766|ref|YP_992868.1| GTP pyrophosphokinase [Burkholderia mallei SAVP1]
gi|167003092|ref|ZP_02268882.1| GTP pyrophosphokinase [Burkholderia mallei PRL-20]
gi|167894559|ref|ZP_02481961.1| GTP pyrophosphokinase [Burkholderia pseudomallei 7894]
gi|167919223|ref|ZP_02506314.1| GTP pyrophosphokinase [Burkholderia pseudomallei BCC215]
gi|254188580|ref|ZP_04895091.1| GTP diphosphokinase [Burkholderia pseudomallei Pasteur 52237]
gi|254297840|ref|ZP_04965293.1| GTP diphosphokinase [Burkholderia pseudomallei 406e]
gi|386861980|ref|YP_006274929.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026b]
gi|403518435|ref|YP_006652568.1| GTP diphosphokinase [Burkholderia pseudomallei BPC006]
gi|418534127|ref|ZP_13099976.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026a]
gi|121228576|gb|ABM51094.1| GTP pyrophosphokinase [Burkholderia mallei SAVP1]
gi|157807669|gb|EDO84839.1| GTP diphosphokinase [Burkholderia pseudomallei 406e]
gi|157936259|gb|EDO91929.1| GTP diphosphokinase [Burkholderia pseudomallei Pasteur 52237]
gi|243061342|gb|EES43528.1| GTP pyrophosphokinase [Burkholderia mallei PRL-20]
gi|385359986|gb|EIF65932.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026a]
gi|385659108|gb|AFI66531.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1026b]
gi|403074077|gb|AFR15657.1| GTP diphosphokinase [Burkholderia pseudomallei BPC006]
Length = 745
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|53725295|ref|YP_102788.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 23344]
gi|67641369|ref|ZP_00440149.1| GTP diphosphokinase [Burkholderia mallei GB8 horse 4]
gi|254178309|ref|ZP_04884964.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 10399]
gi|254199740|ref|ZP_04906106.1| GTP pyrophosphokinase [Burkholderia mallei FMH]
gi|254206062|ref|ZP_04912414.1| GTP pyrophosphokinase [Burkholderia mallei JHU]
gi|52428718|gb|AAU49311.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 23344]
gi|147749336|gb|EDK56410.1| GTP pyrophosphokinase [Burkholderia mallei FMH]
gi|147753505|gb|EDK60570.1| GTP pyrophosphokinase [Burkholderia mallei JHU]
gi|160699348|gb|EDP89318.1| GTP pyrophosphokinase [Burkholderia mallei ATCC 10399]
gi|238522292|gb|EEP85737.1| GTP diphosphokinase [Burkholderia mallei GB8 horse 4]
Length = 745
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|124385843|ref|YP_001026206.1| GTP pyrophosphokinase [Burkholderia mallei NCTC 10229]
gi|126448214|ref|YP_001080522.1| GTP pyrophosphokinase [Burkholderia mallei NCTC 10247]
gi|254358433|ref|ZP_04974706.1| GTP pyrophosphokinase [Burkholderia mallei 2002721280]
gi|124293863|gb|ABN03132.1| GTP diphosphokinase [Burkholderia mallei NCTC 10229]
gi|126241084|gb|ABO04177.1| GTP diphosphokinase [Burkholderia mallei NCTC 10247]
gi|148027560|gb|EDK85581.1| GTP pyrophosphokinase [Burkholderia mallei 2002721280]
Length = 745
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 347
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|78066085|ref|YP_368854.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. 383]
gi|77966830|gb|ABB08210.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. 383]
Length = 744
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 238 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 288
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 289 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 348
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 349 RYKEAGAR 356
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 167 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|217423675|ref|ZP_03455176.1| GTP diphosphokinase [Burkholderia pseudomallei 576]
gi|217393533|gb|EEC33554.1| GTP diphosphokinase [Burkholderia pseudomallei 576]
Length = 774
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 266 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 316
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 317 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGIAAHW 376
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 377 RYKEAGAR 384
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 195 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 235
>gi|167911198|ref|ZP_02498289.1| GTP diphosphokinase [Burkholderia pseudomallei 112]
Length = 745
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|167582119|ref|ZP_02374993.1| GTP pyrophosphokinase [Burkholderia thailandensis TXDOH]
Length = 747
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|116689495|ref|YP_835118.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia HI2424]
gi|116647584|gb|ABK08225.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia HI2424]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|307730403|ref|YP_003907627.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1003]
gi|307584938|gb|ADN58336.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1003]
Length = 747
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPVVYKRIAKLLDEKRVERESYVAQAIERLQQELAAAN-----IRAEVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PKP+GY+SLHT V G DG A EVQIRT MH++AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHDMHQFAEYGVAAHWRYKEAGTR 357
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F +P +++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLAFRFEEPVVYKRI 208
>gi|53719559|ref|YP_108545.1| GTP pyrophosphokinase [Burkholderia pseudomallei K96243]
gi|126439059|ref|YP_001058750.1| GTP diphosphokinase [Burkholderia pseudomallei 668]
gi|126454760|ref|YP_001066004.1| GTP diphosphokinase [Burkholderia pseudomallei 1106a]
gi|134282417|ref|ZP_01769122.1| GTP diphosphokinase [Burkholderia pseudomallei 305]
gi|167738853|ref|ZP_02411627.1| GTP diphosphokinase [Burkholderia pseudomallei 14]
gi|167845982|ref|ZP_02471490.1| GTP diphosphokinase [Burkholderia pseudomallei B7210]
gi|167902962|ref|ZP_02490167.1| GTP diphosphokinase [Burkholderia pseudomallei NCTC 13177]
gi|237812014|ref|YP_002896465.1| GTP diphosphokinase [Burkholderia pseudomallei MSHR346]
gi|242314558|ref|ZP_04813574.1| GTP diphosphokinase [Burkholderia pseudomallei 1106b]
gi|254180006|ref|ZP_04886605.1| GTP diphosphokinase [Burkholderia pseudomallei 1655]
gi|254197483|ref|ZP_04903905.1| GTP diphosphokinase [Burkholderia pseudomallei S13]
gi|254260414|ref|ZP_04951468.1| GTP diphosphokinase [Burkholderia pseudomallei 1710a]
gi|418541171|ref|ZP_13106668.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258a]
gi|418547411|ref|ZP_13112570.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258b]
gi|52209973|emb|CAH35945.1| GTP pyrophosphokinase [Burkholderia pseudomallei K96243]
gi|126218552|gb|ABN82058.1| GTP diphosphokinase [Burkholderia pseudomallei 668]
gi|126228402|gb|ABN91942.1| GTP diphosphokinase [Burkholderia pseudomallei 1106a]
gi|134246455|gb|EBA46544.1| GTP diphosphokinase [Burkholderia pseudomallei 305]
gi|169654224|gb|EDS86917.1| GTP diphosphokinase [Burkholderia pseudomallei S13]
gi|184210546|gb|EDU07589.1| GTP diphosphokinase [Burkholderia pseudomallei 1655]
gi|237506121|gb|ACQ98439.1| GTP diphosphokinase [Burkholderia pseudomallei MSHR346]
gi|242137797|gb|EES24199.1| GTP diphosphokinase [Burkholderia pseudomallei 1106b]
gi|254219103|gb|EET08487.1| GTP diphosphokinase [Burkholderia pseudomallei 1710a]
gi|385358680|gb|EIF64665.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258a]
gi|385361196|gb|EIF67084.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1258b]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|254245610|ref|ZP_04938931.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Burkholderia cenocepacia PC184]
gi|124870386|gb|EAY62102.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Burkholderia cenocepacia PC184]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|107022546|ref|YP_620873.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia AU 1054]
gi|105892735|gb|ABF75900.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia AU 1054]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PP VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 165 PPG----VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|149374702|ref|ZP_01892476.1| GTP pyrophosphokinase [Marinobacter algicola DG893]
gi|149361405|gb|EDM49855.1| GTP pyrophosphokinase [Marinobacter algicola DG893]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 19/179 (10%)
Query: 128 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKS 187
++LH+ A +K AK++ + + S + K+ L+++ G++ LS R K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLDRESYIKRVITTIKDELVAS----GIDGELSGRAKH 267
Query: 188 LYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGE 247
+YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L IVH LW I E
Sbjct: 268 IYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALGIVHTLWRHIPNE 318
Query: 248 FDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET--GNK 304
FDDY+ NPK +GYQSLHTAV GP+G +EVQIRTQ MHE AE G+ AHWLYK T GN+
Sbjct: 319 FDDYVANPKENGYQSLHTAVIGPEGKVMEVQIRTQAMHEEAELGVCAHWLYKGTDKGNR 377
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR- 68
P K VA+E I+ LA RLG+ +K ELEDL F L ++K +A + +
Sbjct: 179 PEEKRMRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLHETAYKK----IAKLLDEKR 234
Query: 69 -NRVGYSRRITTIVSSPPLDERTASD-DESFTTFDEHVLSM 107
+R Y +R+ T + DE AS D + +H+ S+
Sbjct: 235 LDRESYIKRVITTIK----DELVASGIDGELSGRAKHIYSI 271
>gi|170732801|ref|YP_001764748.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia cenocepacia MC0-3]
gi|169816043|gb|ACA90626.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia cenocepacia MC0-3]
Length = 745
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|76808714|ref|YP_333288.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1710b]
gi|76578167|gb|ABA47642.1| GTP pyrophosphokinase [Burkholderia pseudomallei 1710b]
Length = 716
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 208 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 258
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 259 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 318
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 319 RYKEAGAR 326
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 137 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 177
>gi|254252559|ref|ZP_04945877.1| Guanosine polyphosphate pyrophosphohydrolase [Burkholderia dolosa
AUO158]
gi|124895168|gb|EAY69048.1| Guanosine polyphosphate pyrophosphohydrolase [Burkholderia dolosa
AUO158]
Length = 744
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L++EL + + +S R K +YSI+ KMR K++ ++YD RA RV+V
Sbjct: 227 ERLQRELADAN-----IHADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV----- 276
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIR
Sbjct: 277 ----PDIKDCYAVLGIVHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIR 332
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ MH +AE+G+AAHW YKE G +
Sbjct: 333 TQDMHRFAEYGVAAHWRYKEAGTR 356
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PP + VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 163 PPPE---VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|421865372|ref|ZP_16297052.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cenocepacia
H111]
gi|444361037|ref|ZP_21162189.1| RelA/SpoT family protein [Burkholderia cenocepacia BC7]
gi|444365636|ref|ZP_21165760.1| RelA/SpoT family protein [Burkholderia cenocepacia K56-2Valvano]
gi|358074835|emb|CCE47930.1| GTP pyrophosphokinase ppGpp synthetase I [Burkholderia cenocepacia
H111]
gi|443598684|gb|ELT67015.1| RelA/SpoT family protein [Burkholderia cenocepacia BC7]
gi|443605805|gb|ELT73627.1| RelA/SpoT family protein [Burkholderia cenocepacia K56-2Valvano]
Length = 744
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 238 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 288
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 289 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 348
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 349 RYKEAGAR 356
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 167 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 207
>gi|186476317|ref|YP_001857787.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia phymatum STM815]
gi|184192776|gb|ACC70741.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia phymatum STM815]
Length = 746
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K + ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IKAEVSGRPKHIYSIWRKMRGKQLDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 290 VHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 349
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 350 RYKEAGTR 357
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F +PQ ++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLAFRFEEPQTYKRI 208
>gi|385330532|ref|YP_005884483.1| (p)ppGpp synthetase SpoT/RelA [Marinobacter adhaerens HP15]
gi|311693682|gb|ADP96555.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Marinobacter adhaerens HP15]
Length = 757
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L
Sbjct: 268 GIEGELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALG 318
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 319 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHTMHEEAELGVCAH 378
Query: 296 WLYK--ETGNK 304
WLYK + GNK
Sbjct: 379 WLYKGMDKGNK 389
>gi|206559847|ref|YP_002230611.1| GTP pyrophosphokinase [Burkholderia cenocepacia J2315]
gi|198035888|emb|CAR51779.1| GTP pyrophosphokinase [Burkholderia cenocepacia J2315]
Length = 727
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 221 IQADVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYAVLGI 271
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 272 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 331
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 332 RYKEAGAR 339
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 150 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 190
>gi|293603983|ref|ZP_06686396.1| GTP diphosphokinase [Achromobacter piechaudii ATCC 43553]
gi|292817587|gb|EFF76655.1| GTP diphosphokinase [Achromobacter piechaudii ATCC 43553]
Length = 769
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIDAEVSGRPKHIYSIWNKMRVKRLDFAQMYDLRALRIIVED---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLSNEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESD 315
W YKE G K +++ E D
Sbjct: 362 WRYKEAGAKGGQVAASSEYD 381
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ETL ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 182 ARETLDLYAPLANRLGIWQIKWEMEDLSFRFLEPDRYKQI 221
>gi|358451268|ref|ZP_09161702.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter manganoxydans
MnI7-9]
gi|357224501|gb|EHJ03032.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter manganoxydans
MnI7-9]
Length = 745
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 89/131 (67%), Gaps = 11/131 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY+ L
Sbjct: 256 GIEGELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAALG 306
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHTMHEEAELGVCAH 366
Query: 296 WLYK--ETGNK 304
WLYK + GNK
Sbjct: 367 WLYKGMDKGNK 377
>gi|295677049|ref|YP_003605573.1| (p)ppGpp synthetase I SpoT/RelA [Burkholderia sp. CCGE1002]
gi|295436892|gb|ADG16062.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia sp. CCGE1002]
Length = 747
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPDTYKRIAKLLDEKRVERESYVAQAIERLQQELAAAH-----IRAEVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR K + ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIYSIWRKMRGKQLDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE G +
Sbjct: 298 RKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHWRYKEAGAR 357
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F +P ++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLAFRFEEPDTYKRI 208
>gi|167719851|ref|ZP_02403087.1| GTP diphosphokinase [Burkholderia pseudomallei DM98]
Length = 745
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHYLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|91788565|ref|YP_549517.1| (p)ppGpp synthetase I SpoT/RelA [Polaromonas sp. JS666]
gi|91697790|gb|ABE44619.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Polaromonas sp. JS666]
Length = 750
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 90/141 (63%), Gaps = 10/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI KMR K +G +V+D RALRV+ D NG CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLGFDQVFDIRALRVIAADING---------CYAALG 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + P+ GEFDDYI PK +GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAH
Sbjct: 303 FVHSRFTPVAGEFDDYIAKPKSNGYQSLHTVVRDAAGRAVEIQIRTQAMHDHAEHGVAAH 362
Query: 296 WLYKETGNKLQS-ISSMDESD 315
W YKE G K S +S+ E D
Sbjct: 363 WAYKEAGTKGYSGVSASSEYD 383
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 55
A+A E+L ++ LA+RLG+W +K E+EDL F L+P ++
Sbjct: 181 ALAHESLHVFAPLANRLGIWQIKWEMEDLAFRFLEPDTYK 220
>gi|253995493|ref|YP_003047557.1| RelA/SpoT family protein [Methylotenera mobilis JLW8]
gi|253982172|gb|ACT47030.1| RelA/SpoT family protein [Methylotenera mobilis JLW8]
Length = 666
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 94/138 (68%), Gaps = 9/138 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
+ELL G++ +S R K +YSI +KMRRK++ +++D RA+R++V D
Sbjct: 244 EELLKQKLAQAGIQAEVSGRPKHIYSIINKMRRKNLDFEQLFDVRAVRILVED------- 296
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
++ CYS L +V LW PI GEFDDYI PK + Y+SLHTAV GP+G ALEVQIRT +M
Sbjct: 297 --VKDCYSALSLVQTLWQPIPGEFDDYIARPKSNNYRSLHTAVSGPEGLALEVQIRTHEM 354
Query: 285 HEYAEHGLAAHWLYKETG 302
H+Y+E G+AAHW YKE G
Sbjct: 355 HQYSELGVAAHWRYKEGG 372
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+E I+ LA+RLG+W LK E+EDL L+PQ+++++
Sbjct: 185 IAREIQGIFSPLANRLGVWQLKWEMEDLSLRYLEPQLYKEV 225
>gi|167587364|ref|ZP_02379752.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia ubonensis Bu]
Length = 746
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 240 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 290
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 291 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHSFAEYGVAAHW 350
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 351 RYKEAGTR 358
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 169 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 209
>gi|421745285|ref|ZP_16183143.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus necator
HPC(L)]
gi|409776307|gb|EKN57726.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus necator
HPC(L)]
Length = 742
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 93/144 (64%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L++EL + G+ +S R K +YSI+ KMR KD+ +YD RA RV+V D
Sbjct: 232 ERLQRELAAA-----GIRAEVSGRPKHIYSIWKKMRGKDLDFADLYDVRAFRVIVDD--- 283
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIR
Sbjct: 284 ------IKDCYAVLGIVHHVWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIR 337
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
T +MH +AE+G+AAHW YKE G K
Sbjct: 338 THEMHHFAEYGVAAHWRYKEAGGK 361
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W +K ELEDL F QP ++++
Sbjct: 171 GVARETLDIYAPLANRLGIWQMKWELEDLAFRFEQPDTYKRI 212
>gi|120555153|ref|YP_959504.1| (p)ppGpp synthetase I SpoT/RelA [Marinobacter aquaeolei VT8]
gi|387813411|ref|YP_005428893.1| (p)ppGpp synthetase I/GTP pyrophosphokinaseP), SpoT/RelA
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|120325002|gb|ABM19317.1| (p)ppGpp synthetase I, SpoT/RelA [Marinobacter aquaeolei VT8]
gi|381338423|emb|CCG94470.1| (p)ppGpp synthetase I/GTP pyrophosphokinaseP), SpoT/RelA
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 745
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 88/132 (66%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YSI+ KMRRK + +VYD RA+R++V P ++ CY L
Sbjct: 256 GIKAELSGRAKHIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYGALG 306
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPNEFDDYIANPKENGYQSLHTAVIGPEGKVMEVQIRTHAMHEEAELGVCAH 366
Query: 296 WLYKETGNKLQS 307
WLYK T + +S
Sbjct: 367 WLYKGTDTRNKS 378
>gi|300311292|ref|YP_003775384.1| (p)ppGpp synthetase I [Herbaspirillum seropedicae SmR1]
gi|300074077|gb|ADJ63476.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) protein
[Herbaspirillum seropedicae SmR1]
Length = 749
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI++KMR K + ++YD RA RV+V D ++ CY++L IVH +
Sbjct: 254 VSGRPKHIYSIWNKMRGKHIDFSELYDVRAFRVIVDD---------VKTCYAVLGIVHDI 304
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI PK +GYQSLHT V DG ALEVQIRT +MH +AE+G+AAHW YKE
Sbjct: 305 WTPIPEEFDDYISRPKQNGYQSLHTVVTAEDGRALEVQIRTHEMHHFAEYGVAAHWRYKE 364
Query: 301 TGNKLQSISSMDE 313
+G S DE
Sbjct: 365 SGGSNFSAQKYDE 377
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A++T ++ LA+RLG+W LK ELEDL F L+P ++++
Sbjct: 180 ARQTFELYAPLANRLGIWQLKWELEDLSFRFLEPVTYKRI 219
>gi|88703547|ref|ZP_01101263.1| GTP pyrophosphokinase [Congregibacter litoralis KT71]
gi|88702261|gb|EAQ99364.1| GTP pyrophosphokinase [Congregibacter litoralis KT71]
Length = 744
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 94/138 (68%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK +G +VYD RA+R++V P ++ CY+ L
Sbjct: 257 GIEFEISGRSKHIYSIWRKMQRKGIGFSQVYDIRAIRILV---------PELKDCYATLG 307
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AH
Sbjct: 308 LVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTREMHEEAELGVCAH 367
Query: 296 WLYKETGNKLQSISSMDE 313
W YK T + S SS DE
Sbjct: 368 WRYKGTDTQPGSGSSYDE 385
>gi|415946935|ref|ZP_11556523.1| GTP pyrophosphokinase [Herbaspirillum frisingense GSF30]
gi|407758147|gb|EKF68016.1| GTP pyrophosphokinase [Herbaspirillum frisingense GSF30]
Length = 727
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 99/162 (61%), Gaps = 17/162 (10%)
Query: 160 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
E+ LE+E ++++ + +S R K +YSI++KMR K + ++YD RA
Sbjct: 203 EKRLEREAFVASAIARLRSEMAAQDIRAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAF 262
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RV+V D ++ CY++L IVH +W PI EFDDYI PK +GYQSLHT V D
Sbjct: 263 RVIVDD---------VKTCYAVLGIVHDIWTPIPEEFDDYISRPKQNGYQSLHTVVLAED 313
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 313
G ALEVQIRT +MH +AE+G+AAHW YKE+G S DE
Sbjct: 314 GRALEVQIRTHEMHHFAEYGVAAHWRYKESGGSNFSAQKYDE 355
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A++T ++ LA+RLG+W LK ELEDL F L+PQ ++++
Sbjct: 158 ARQTFDLYAPLANRLGIWQLKWELEDLSFRFLEPQTYKRI 197
>gi|170695919|ref|ZP_02887059.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia graminis C4D1M]
gi|170139217|gb|EDT07405.1| (p)ppGpp synthetase I, SpoT/RelA [Burkholderia graminis C4D1M]
Length = 747
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + + S VA E L++EL + + +S R
Sbjct: 192 LEDLAFRFEEPAVYKRIAKLLDEKRVERESYVAQAIERLQQELAAAN-----IRAEVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K ++SI+ KMR K++ ++YD RA RV+V P I+ CY++L IVH LW P+
Sbjct: 247 PKHIFSIWRKMRGKELDFAELYDVRAFRVIV---------PDIKDCYTVLGIVHNLWQPV 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW YKE G +
Sbjct: 298 PKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHWRYKEAGTR 357
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F +P +++++
Sbjct: 168 VARETLDIYAPLANRLGIWQLKWELEDLAFRFEEPAVYKRI 208
>gi|350545530|ref|ZP_08915006.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Candidatus
Burkholderia kirkii UZHbot1]
gi|350526692|emb|CCD39813.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Candidatus
Burkholderia kirkii UZHbot1]
Length = 740
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 87/124 (70%), Gaps = 9/124 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KMR K + ++ D RA RV+VGD I+ CY++L IVH L
Sbjct: 243 VSGRPKHIYSIWKKMRGKHLDFSELNDVRAFRVIVGD---------IKDCYTVLGIVHNL 293
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRTQ+MH++AE+G+AAHW YKE
Sbjct: 294 WQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTQEMHQFAEYGVAAHWRYKE 353
Query: 301 TGNK 304
G +
Sbjct: 354 AGTR 357
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
V +ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VPRETLEIYAPLANRLGIWQLKWELEDLSFRFEDPVTYKRI 208
>gi|399020946|ref|ZP_10723070.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. CF444]
gi|398093912|gb|EJL84286.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. CF444]
Length = 752
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI++KMR K + ++YD RA RV+V D I+ CY++L I
Sbjct: 250 IKAEVSGRPKHIYSIWNKMRGKSIDFSELYDVRAFRVIVDD---------IKTCYTVLGI 300
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H +W+PI EFDDYI PK +GYQSLHT V DG LEVQIRT +MH +AE+G+AAHW
Sbjct: 301 IHNIWVPIPKEFDDYISRPKQNGYQSLHTVVIAEDGRPLEVQIRTHEMHHFAEYGVAAHW 360
Query: 297 LYKETGNKLQSISSMDE 313
YKE+G S DE
Sbjct: 361 RYKESGGSNFSAQKYDE 377
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ET ++ LA+RLG+W LK ELEDL F ++P ++++
Sbjct: 180 ARETFDLYAPLANRLGIWQLKWELEDLSFRFIEPVTYKRI 219
>gi|17546295|ref|NP_519697.1| GTP pyrophosphokinase [Ralstonia solanacearum GMI1000]
gi|17428592|emb|CAD15278.1| probable gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase)
protein [Ralstonia solanacearum GMI1000]
Length = 746
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KMR KD+ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 296 WLYKETGNK 304
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 176 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRI 217
>gi|444921552|ref|ZP_21241387.1| GTP pyrophosphokinase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507279|gb|ELV07456.1| GTP pyrophosphokinase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 695
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 18/166 (10%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R+K +YSI+ KM K ++ D RA+RV+V + + CY +L
Sbjct: 212 GIEGEVSGRVKHIYSIWKKMTTKGKSFEELLDVRAVRVIVKN---------LSDCYRVLG 262
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH W P+ EFDDYI NPKP+GYQSLHTAV GP A+EVQIRT+KMHE+AE G+AAH
Sbjct: 263 MVHEKWPPLPREFDDYIANPKPNGYQSLHTAVLGPQNKAIEVQIRTRKMHEHAELGVAAH 322
Query: 296 WLYKETGNKLQSISSMDES----DIEASSSLSKDTDDHNPLDTDLF 337
W YKE+ L + ++ D EA+S SK+ LD DLF
Sbjct: 323 WHYKESDASLSQQAKLNRVRQLLDQEANSESSKEL-----LDKDLF 363
>gi|326794413|ref|YP_004312233.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas mediterranea MMB-1]
gi|326545177|gb|ADZ90397.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas mediterranea MMB-1]
Length = 749
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 96/152 (63%), Gaps = 11/152 (7%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
ELL S +E L R K +YSI+ KM+RK++G +VYD RA+R++V +
Sbjct: 246 ELLDSRLKGIKIEADLMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVEED------- 298
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
CY +L +VH LW PI EFDDYI NPKP+GYQSLHTAV GP G ALE+QIRT MH
Sbjct: 299 --MQCYGVLGVVHNLWKPIPQEFDDYISNPKPNGYQSLHTAVVGPQGRALEIQIRTNTMH 356
Query: 286 EYAEHGLAAHWLYKETGNKLQSISSMDESDIE 317
E AE G+ AHW YK G L S S+ E ++
Sbjct: 357 EDAELGVCAHWKYK--GTDLSSNSTSYEEKLQ 386
>gi|167824448|ref|ZP_02455919.1| GTP pyrophosphokinase [Burkholderia pseudomallei 9]
gi|226199671|ref|ZP_03795224.1| GTP diphosphokinase [Burkholderia pseudomallei Pakistan 9]
gi|225928257|gb|EEH24291.1| GTP diphosphokinase [Burkholderia pseudomallei Pakistan 9]
Length = 745
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 237 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 287
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLH V G DG A EVQIRTQ+MH +AE+G+AAHW
Sbjct: 288 VHHLWQPVPKEFDDYISRPKPNGYKSLHAVVIGDDGRAFEVQIRTQEMHRFAEYGVAAHW 347
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 348 RYKEAGAR 355
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 166 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 206
>gi|365873417|ref|ZP_09412950.1| (p)ppGpp synthetase, RelA/SpoT family [Thermanaerovibrio velox DSM
12556]
gi|363983504|gb|EHM09711.1| (p)ppGpp synthetase, RelA/SpoT family [Thermanaerovibrio velox DSM
12556]
Length = 760
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +LS R K YSI+ KMRRK++ + ++YD ALRVVVG + CY +L
Sbjct: 268 GIEASLSGRPKHFYSIYEKMRRKNLSLEQLYDLLALRVVVG---------TVAECYQVLG 318
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 319 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHWLAEYGIAAH 378
Query: 296 WLYKETGNKLQSI 308
W YKE ++ I
Sbjct: 379 WHYKEGKRRVDQI 391
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
K +A+ETL I+ LA RLG++ +K ELEDLCF +L+P+I+ ++R
Sbjct: 194 KQITIAKETLEIYAPLAHRLGIYNVKRELEDLCFKILEPEIYYEIR 239
>gi|121605432|ref|YP_982761.1| (p)ppGpp synthetase I SpoT/RelA [Polaromonas naphthalenivorans CJ2]
gi|120594401|gb|ABM37840.1| (p)ppGpp synthetase I, SpoT/RelA [Polaromonas naphthalenivorans
CJ2]
Length = 756
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 90/141 (63%), Gaps = 10/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI KMR K +G +V+D RALRV+ D G CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLGFDQVFDIRALRVIAADVKG---------CYAALG 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + P++GEFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AE+G+AAH
Sbjct: 303 FVHSCFSPVNGEFDDYIAKPKPNGYQSLHTVVRDEGGRAMEIQIRTQAMHDHAENGVAAH 362
Query: 296 WLYKETGNK-LQSISSMDESD 315
W YKE G K +S+ E D
Sbjct: 363 WAYKEAGTKGYAGVSASSEYD 383
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A RA+A E+L ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 177 AAPRALAHESLHVFAPLANRLGIWQIKWEMEDLAFRFLEPDTYKQI 222
>gi|83719568|ref|YP_443112.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
gi|83653393|gb|ABC37456.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
Length = 725
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 217 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 267
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 268 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHW 327
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 328 RYKEAGAR 335
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 146 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 186
>gi|167620277|ref|ZP_02388908.1| GTP pyrophosphokinase [Burkholderia thailandensis Bt4]
gi|257139341|ref|ZP_05587603.1| GTP pyrophosphokinase [Burkholderia thailandensis E264]
Length = 747
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K++ ++YD RA RV+V P I+ CY++L I
Sbjct: 239 IQAEVSGRPKHIYSIWRKMRGKELDFSELYDVRAFRVIV---------PDIKDCYTVLGI 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW
Sbjct: 290 VHHLWQPVPKEFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHEMHRFAEYGVAAHW 349
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 350 RYKEAGAR 357
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VARETLEIYAPLANRLGIWQLKWELEDLAFRFEDPVTYKRI 208
>gi|119476417|ref|ZP_01616768.1| GTP pyrophosphokinase [marine gamma proteobacterium HTCC2143]
gi|119450281|gb|EAW31516.1| GTP pyrophosphokinase [marine gamma proteobacterium HTCC2143]
Length = 741
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E LS R K +YSI+ KM+RK +G +VYD RA+R++V P ++ CY+ L
Sbjct: 254 GIEADLSGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRILV---------PDVRDCYAALG 304
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI NPK +GY+SLHTAV GP+G ALE+QIRT MHE AE G+ AH
Sbjct: 305 LVHSLWRNIPNEFDDYIANPKDNGYRSLHTAVIGPEGKALEIQIRTFSMHEEAEFGICAH 364
Query: 296 WLYKETGNK 304
W YK + N+
Sbjct: 365 WRYKGSDNQ 373
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PAK VA+E ++ LA RLG+ +K ELEDL F LQP ++K+
Sbjct: 178 PAKRYRVAREVHDVYAPLAHRLGIGHIKWELEDLSFRYLQPVAYKKI 224
>gi|332284967|ref|YP_004416878.1| GTP pyrophosphokinase [Pusillimonas sp. T7-7]
gi|330428920|gb|AEC20254.1| GTP pyrophosphokinase [Pusillimonas sp. T7-7]
Length = 770
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 101/160 (63%), Gaps = 14/160 (8%)
Query: 156 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 215
+ A LE+EL + ++IP +S R K +YSI++KMR K + +++D RALR++V
Sbjct: 251 ITAAVSRLEREL--ADAHIPAQ---VSGRPKHIYSIWNKMRNKGIDFSQLFDLRALRIIV 305
Query: 216 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 275
D+ + CY++L + H LW P+ EFDDYI PKP+GY+SLHT V G
Sbjct: 306 QDE---------RACYAVLALAHSLWTPVSDEFDDYISRPKPNGYRSLHTVVTDTQGRTF 356
Query: 276 EVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 315
E+QIRTQ+MHE+AE+G+AAHW YKE G + +S+ D
Sbjct: 357 EIQIRTQEMHEFAEYGMAAHWRYKEAGPRGGQVSAAGRYD 396
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+ A+ET+ ++ LA+RLG+W +K E+EDL F L+P ++ +
Sbjct: 195 SFARETMELYTPLANRLGIWQIKWEMEDLAFRFLEPVTYKAI 236
>gi|333915501|ref|YP_004489233.1| (p)ppGpp synthetase I SpoT/RelA [Delftia sp. Cs1-4]
gi|333745701|gb|AEF90878.1| (p)ppGpp synthetase I, SpoT/RelA [Delftia sp. Cs1-4]
Length = 749
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ T+ R K +YSI KMR K + +V+D RA+RVVV P I+ CY+ L
Sbjct: 262 ISATVQGRPKHIYSIVKKMRGKSLNFDQVFDIRAMRVVV---------PTIKDCYATLSW 312
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 313 VHEQFTPIEAEFDDYIAKPKPNGYQSLHTVVRDETGRAIEIQIRTQAMHDHAEHGVAAHW 372
Query: 297 LYKETGNK 304
YKE G K
Sbjct: 373 AYKEAGTK 380
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+E L ++ LA+RLG+W +K ELEDL L+P+ +R++
Sbjct: 190 GIAREALTVFAPLANRLGIWQIKWELEDLSLRFLEPETYREV 231
>gi|160898297|ref|YP_001563879.1| (p)ppGpp synthetase I SpoT/RelA [Delftia acidovorans SPH-1]
gi|160363881|gb|ABX35494.1| (p)ppGpp synthetase I, SpoT/RelA [Delftia acidovorans SPH-1]
Length = 749
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ T+ R K +YSI KMR K + +V+D RA+RVVV P I+ CY+ L
Sbjct: 262 ISATVQGRPKHIYSIVKKMRGKSLNFDQVFDIRAMRVVV---------PTIKDCYATLSW 312
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 313 VHEQFTPIEAEFDDYIAKPKPNGYQSLHTVVRDETGRAIEIQIRTQAMHDHAEHGVAAHW 372
Query: 297 LYKETGNK 304
YKE G K
Sbjct: 373 AYKEAGTK 380
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+E L ++ LA+RLG+W +K ELEDL L+P+ +R++
Sbjct: 190 GIAREALTVFAPLANRLGIWQIKWELEDLSLRFLEPETYREV 231
>gi|386333316|ref|YP_006029485.1| GTP diphosphokinase [Ralstonia solanacearum Po82]
gi|334195764|gb|AEG68949.1| GTP diphosphokinase [Ralstonia solanacearum Po82]
Length = 746
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 20/159 (12%)
Query: 157 VAC---EEALEKELLIS--------TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKV 205
+AC E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +
Sbjct: 217 IACLLDEKRIEREKFIGEAIARLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADL 276
Query: 206 YDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHT 265
YD RA RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT
Sbjct: 277 YDVRAFRVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHT 327
Query: 266 AVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
V G DG ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 328 VVIGDDGRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 366
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 176 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 217
>gi|398833360|ref|ZP_10591494.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. YR522]
gi|398221717|gb|EJN08119.1| (p)ppGpp synthetase, RelA/SpoT family [Herbaspirillum sp. YR522]
Length = 750
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 90/138 (65%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RA RV+V D ++ CY++L
Sbjct: 250 GIRAEVSGRPKHIYSIWNKMRGKSLDFSELYDVRAFRVIVDD---------VKTCYTVLG 300
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI EFDDYI PK +GYQSLHT V DG A+EVQ+RT +MH +AE+G+AAH
Sbjct: 301 IVHDIWTPIPEEFDDYISRPKANGYQSLHTVVMAEDGRAIEVQVRTHEMHYFAEYGVAAH 360
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE+G + DE
Sbjct: 361 WRYKESGGSNFAAQKYDE 378
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+R A+ET ++ LA+RLG+W LK ELEDL F +P ++++
Sbjct: 177 SRQYARETFELYAPLANRLGIWQLKWELEDLSFRFQEPATYKRI 220
>gi|332528308|ref|ZP_08404308.1| (p)ppGpp synthetase I SpoT/RelA [Hylemonella gracilis ATCC 19624]
gi|332042179|gb|EGI78505.1| (p)ppGpp synthetase I SpoT/RelA [Hylemonella gracilis ATCC 19624]
Length = 739
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
GMEV + R K +YSI KMR K + ++YD RALRVVV D + CY+ L
Sbjct: 233 GMEVEVQGRPKHIYSIIRKMRGKSLDFDRIYDVRALRVVVSD---------VPACYAALS 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + P+ EFDDYI PKP+GYQSLHT V+ +G A+E+QIRTQ MHE+AE G+AAH
Sbjct: 284 WVHSHYTPVVEEFDDYIARPKPNGYQSLHTVVRDAEGRAIEIQIRTQAMHEHAELGVAAH 343
Query: 296 WLYKETGNK 304
W YKE G K
Sbjct: 344 WAYKEAGAK 352
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LPP +A E+L ++ LA+RLG+W +K E+EDL F L+P ++ +
Sbjct: 159 LPPG----LAAESLHVFAPLANRLGIWEIKWEMEDLAFRFLEPDTYKHI 203
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ +++ + K+ +LR +L WE+ L +S + G A G +V+ + ++ P I
Sbjct: 359 TADSAYDAKIAVLRQLLAWEQDL---SSGKDESASGLARGAAGAVLDDRIYVLT-PQATI 414
Query: 552 MRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 595
+ L G+T D A + G + V+G +V NT LK+G VE+
Sbjct: 415 VDLPQGATPVDFAYSLHTDLGHHCRGARVDGAMVPLNTPLKNGQTVEI 462
>gi|33594456|ref|NP_882100.1| GTP pyrophosphokinase [Bordetella pertussis Tohama I]
gi|384205753|ref|YP_005591492.1| putative GTP pyrophosphokinase [Bordetella pertussis CS]
gi|408416485|ref|YP_006627192.1| GTP pyrophosphokinase [Bordetella pertussis 18323]
gi|33564531|emb|CAE43846.1| putative GTP pyrophosphokinase [Bordetella pertussis Tohama I]
gi|332383867|gb|AEE68714.1| putative GTP pyrophosphokinase [Bordetella pertussis CS]
gi|401778655|emb|CCJ64097.1| putative GTP pyrophosphokinase [Bordetella pertussis 18323]
Length = 737
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESDIEAS 319
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W LK E+EDL F L+P+ ++++
Sbjct: 178 AAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYKQI 221
>gi|374584179|ref|ZP_09657271.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_0327 [Leptonema
illini DSM 21528]
gi|373873040|gb|EHQ05034.1| LOW QUALITY PROTEIN: hypothetical protein Lepil_0327 [Leptonema
illini DSM 21528]
Length = 690
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 20/168 (11%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K LYS++SKM++ GIH++YD R +R++V + I+ CY L IVH L
Sbjct: 249 IDGRAKHLYSVYSKMQKYGKGIHEIYDLRGVRIIVDE---------IRDCYGALGIVHTL 299
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK- 299
W P+ G F DYI PK +GYQSLHT V GPDG LEVQIRTQ+M E AEHG+AAHWLYK
Sbjct: 300 WPPLPGRFKDYIAMPKSNGYQSLHTTVVGPDGRPLEVQIRTQEMDERAEHGIAAHWLYKN 359
Query: 300 ----ETGNK-----LQSISSMDESDIEASSSLSKD-TDDHNPLDTDLF 337
E G++ L+++S + + S +D D+ NP D +F
Sbjct: 360 DMRAERGDQGKLEWLRTLSRITQEFQGDSKDFIEDLRDELNPKDVYVF 407
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
P K +A+E + I+ +A RLG++ +K+ELEDL F LQP+ F ++++L
Sbjct: 168 PHKVERIAREVIDIYAPIAGRLGMFRMKSELEDLAFGALQPEEFETLQSEL 218
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 534 DSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKD 589
D + P +V + P G+I+ L GST D A ++ GL K VN ++V TEL+
Sbjct: 397 DELNPKDVYVFT-PKGDIINLPQGSTVLDFAFRIHTDIGLRCKSAKVNDRIVPLRTELRS 455
Query: 590 GDIVEV 595
GD +E+
Sbjct: 456 GDRIEI 461
>gi|33602751|ref|NP_890311.1| GTP pyrophosphokinase [Bordetella bronchiseptica RB50]
gi|427815767|ref|ZP_18982831.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 1289]
gi|33577193|emb|CAE35750.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica RB50]
gi|410566767|emb|CCN24336.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 1289]
Length = 737
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESDIEAS 319
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W LK E+EDL F L+P+ ++++
Sbjct: 178 AAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYKQI 221
>gi|427825820|ref|ZP_18992882.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica Bbr77]
gi|410591085|emb|CCN06182.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica Bbr77]
Length = 737
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESDIEAS 319
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W LK E+EDL F L+P+ +R++
Sbjct: 178 AAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYRQI 221
>gi|410421226|ref|YP_006901675.1| GTP pyrophosphokinase [Bordetella bronchiseptica MO149]
gi|408448521|emb|CCJ60204.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica MO149]
Length = 737
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESDIEAS 319
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W LK E+EDL F L+P+ ++++
Sbjct: 178 AAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYKQI 221
>gi|412341915|ref|YP_006970670.1| GTP pyrophosphokinase [Bordetella bronchiseptica 253]
gi|408771749|emb|CCJ56553.1| putative GTP pyrophosphokinase [Bordetella bronchiseptica 253]
Length = 737
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESDIEAS 319
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W LK E+EDL F L+P+ ++++
Sbjct: 178 AAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYKQI 221
>gi|187477599|ref|YP_785623.1| GTP pyrophosphokinase [Bordetella avium 197N]
gi|115422185|emb|CAJ48709.1| putative GTP pyrophosphokinase [Bordetella avium 197N]
Length = 743
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 17/164 (10%)
Query: 160 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
E+ +++E I+ + + G++ +S R K +YSI++K R K + K+YD RAL
Sbjct: 225 EKRVQREAFITDTIVRIQAVLARAGIKGEVSGRPKHIYSIWNKTRIKGLDFSKLYDLRAL 284
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RV+V D ++ CYS L +VH LW PI EFDDYI PKP+GY+SLHT V +
Sbjct: 285 RVIVDD---------VRDCYSALALVHELWTPIPEEFDDYISRPKPNGYRSLHTVVMDEE 335
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD 315
G A EVQIRT++MH++AE+G+AAHW YKE G K +++ + D
Sbjct: 336 GRAFEVQIRTREMHQFAEYGMAAHWRYKEAGAKGGQVAASSDYD 379
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 178 AFARETLDLYTPLANRLGIWQIKWEMEDLSFRFLEPDRYKEI 219
>gi|410473818|ref|YP_006897099.1| GTP pyrophosphokinase [Bordetella parapertussis Bpp5]
gi|408443928|emb|CCJ50622.1| putative GTP pyrophosphokinase [Bordetella parapertussis Bpp5]
Length = 737
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 9/144 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDD---------VRACYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V G A EVQIRT++MH++AE+G+AAH
Sbjct: 302 LVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESDIEAS 319
W YKE G + +++ E D + S
Sbjct: 362 WRYKEAGARGGQVAASSEYDRQLS 385
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W LK E+EDL F L+P+ ++++
Sbjct: 178 AAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYKQI 221
>gi|312880418|ref|ZP_07740218.1| (p)ppGpp synthetase I, SpoT/RelA [Aminomonas paucivorans DSM 12260]
gi|310783709|gb|EFQ24107.1| (p)ppGpp synthetase I, SpoT/RelA [Aminomonas paucivorans DSM 12260]
Length = 760
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 102/165 (61%), Gaps = 12/165 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +L+ R K YSI+ KMRRK++ + ++YD ALRVVVG + CY +L
Sbjct: 273 GVEASLNGRPKHFYSIYEKMRRKNLSLDQLYDLLALRVVVG---------GLAECYQVLG 323
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 324 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHRLAEYGIAAH 383
Query: 296 WLYKETG---NKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLF 337
W YKE N+L + +E+ S+ T+ + L TD+
Sbjct: 384 WHYKEGKQRVNQLDRRLTWIRQVLESQQDGSEPTEFLDNLKTDVL 428
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
A+A+ETL I+ LA RLG++ +K ELEDL F +L P+I+ ++R
Sbjct: 202 AIAKETLEIYAPLAHRLGIYQVKRELEDLSFKILDPEIYYEIR 244
>gi|126667182|ref|ZP_01738156.1| GTP pyrophosphokinase [Marinobacter sp. ELB17]
gi|126628338|gb|EAZ98961.1| GTP pyrophosphokinase [Marinobacter sp. ELB17]
Length = 743
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 112/181 (61%), Gaps = 19/181 (10%)
Query: 128 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 186
++LH+ A +K AK++ + + S + ALE EL + G++ +S R+K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLNRESYIKRVVAALESELGST-----GIKGDVSGRVK 266
Query: 187 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246
+YSI+ KMRRK + +VYD RA+R++V P ++ CY++L IVH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAVLGIVHGLWRHIPN 317
Query: 247 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 306
EFDDYI N K +GYQSLHTAV GP+G +EVQIRT MHE AE G+ AHWLYK T K +
Sbjct: 318 EFDDYIANVKENGYQSLHTAVIGPEGKVMEVQIRTHDMHEEAELGVCAHWLYKGTDTKNK 377
Query: 307 S 307
S
Sbjct: 378 S 378
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
ALP + R VA+E I+ LA RLG+ +K ELEDL F L ++K +A +
Sbjct: 178 ALPEKRMR-VAREVSDIYAPLAHRLGIGYIKWELEDLSFRYLHETAYKK----IAKLLDE 232
Query: 68 R--NRVGYSRRITTIVSS 83
+ NR Y +R+ + S
Sbjct: 233 KRLNRESYIKRVVAALES 250
>gi|260219530|emb|CBA26375.1| GTP pyrophosphokinase [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 745
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ T+ R K +YSI KMR K +G +VYD RALR+VV P + CY+ L
Sbjct: 254 GVHATVQGRPKHIYSIVKKMRGKSLGFDQVYDIRALRIVV---------PTVPDCYAALS 304
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + PI EFDDYI PKP+GYQSLHT V+ +EVQIRTQ MH++AEHG+AAH
Sbjct: 305 LVHTRFTPITEEFDDYIARPKPNGYQSLHTVVRDAGSQPIEVQIRTQAMHDHAEHGVAAH 364
Query: 296 WLYKETGNK 304
W YKE G K
Sbjct: 365 WAYKEAGAK 373
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+PP +A E L ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 180 VPPG----LASEALQVFAPLANRLGIWEIKWEMEDLSFRFLEPDTYKQV 224
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 498 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSV-VPGEVVIVCWPNGEIMRLRS 556
+ K+ +LR +L WE L A+ PD + + + V P+ I+ L
Sbjct: 386 DAKIAVLRQLLAWERDLSG------------AHATPDGQGMFDDRIYVLTPDAAIVELPQ 433
Query: 557 GSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 595
G+TA D A V G + V+G +V NT LK+G VEV
Sbjct: 434 GATAVDFAYSVHTNLGHRCRGAKVDGAMVPLNTPLKNGQTVEV 476
>gi|377820441|ref|YP_004976812.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. YI23]
gi|357935276|gb|AET88835.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Burkholderia sp. YI23]
Length = 740
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 14/142 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+KEL T++I +S R K +YSI+ KMR K + ++ D RA RV+VGD
Sbjct: 230 LQKEL--DTAHI---RADVSGRPKHIYSIWKKMRGKHLDFSELNDVRAFRVIVGD----- 279
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT
Sbjct: 280 ----IKDCYTVLGIVHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTY 335
Query: 283 KMHEYAEHGLAAHWLYKETGNK 304
+MH++AE+G+AAHW YKE G +
Sbjct: 336 EMHQFAEYGVAAHWRYKEAGTR 357
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
V +ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VPRETLEIYAPLANRLGIWQLKWELEDLSFRFEDPVTYKRI 208
>gi|413962948|ref|ZP_11402175.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. SJ98]
gi|413928780|gb|EKS68068.1| (p)ppGpp synthetase SpoT/RelA [Burkholderia sp. SJ98]
Length = 740
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 96/142 (67%), Gaps = 14/142 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+KEL T++I + +S R K +YSI+ KMR K + ++ D RA RV+VGD
Sbjct: 230 LQKEL--ETAHI---KADVSGRPKHIYSIWKKMRGKQLDFAELNDVRAFRVIVGD----- 279
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
I+ CY++L IVH LW P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT
Sbjct: 280 ----IKDCYTVLGIVHNLWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTY 335
Query: 283 KMHEYAEHGLAAHWLYKETGNK 304
+MH++AE+G+AAHW YKE G +
Sbjct: 336 EMHQFAEYGVAAHWRYKEAGAR 357
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
V +ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 168 VPRETLEIYAPLANRLGIWQLKWELEDLSFRFEDPVTYKRI 208
>gi|421887916|ref|ZP_16319044.1| GTP diphosphokinase [Ralstonia solanacearum K60-1]
gi|378966725|emb|CCF95792.1| GTP diphosphokinase [Ralstonia solanacearum K60-1]
Length = 746
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 176 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 217
>gi|237748987|ref|ZP_04579467.1| GTP pyrophosphokinase [Oxalobacter formigenes OXCC13]
gi|229380349|gb|EEO30440.1| GTP pyrophosphokinase [Oxalobacter formigenes OXCC13]
Length = 747
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI++KMR K + ++YD RA+R++V D I+ C+++LDIV+RLW P
Sbjct: 255 RPKHIYSIYNKMRGKSLDFSQMYDLRAVRIIVDD---------IKSCFTVLDIVNRLWTP 305
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
I EFDDYI PKP+GYQSLHT V +G EVQIRTQ+MH AE+G+AAHW YKETG
Sbjct: 306 ILEEFDDYISRPKPNGYQSLHTVVVAENGQPFEVQIRTQEMHRLAEYGVAAHWRYKETGG 365
Query: 304 KLQSISSMDE 313
DE
Sbjct: 366 STFVAQQYDE 375
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
R A+ETL I+ LA+RLG+W +K ELEDL F ++P ++ + L + R
Sbjct: 175 RQYAKETLEIYAPLANRLGIWQVKWELEDLSFRFIEPDAYKNIAKSLEEKRTER 228
>gi|207742944|ref|YP_002259336.1| gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein
[Ralstonia solanacearum IPO1609]
gi|206594339|emb|CAQ61266.1| gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein
[Ralstonia solanacearum IPO1609]
Length = 746
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 176 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 217
>gi|421897088|ref|ZP_16327461.1| probable gtp 3'-pyrophosphotransferase protein, partial [Ralstonia
solanacearum MolK2]
gi|206588253|emb|CAQ18811.1| probable gtp 3'-pyrophosphotransferase protein, partial [Ralstonia
solanacearum MolK2]
Length = 729
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 222 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 272
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +
Sbjct: 273 KDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHF 332
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE G+K
Sbjct: 333 AEYGVAAHWRYKEAGSK 349
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 159 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 200
>gi|120610273|ref|YP_969951.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax citrulli AAC00-1]
gi|120588737|gb|ABM32177.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax citrulli AAC00-1]
Length = 753
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ T+ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 254 ISATVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVVV---------PTVKDCYAALSW 304
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PID EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 305 VHSHFKPIDAEFDDYIAKPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 364
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G K +S+ E D
Sbjct: 365 AYKEAGAKGYAGVSASSEYD 384
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E L ++ LA+RLG+W +K ELEDL F L+P ++++
Sbjct: 182 SIAREALQVFAPLANRLGIWQMKWELEDLSFRFLEPDTYKQI 223
>gi|344174549|emb|CCA86347.1| GTP diphosphokinase [Ralstonia syzygii R24]
Length = 746
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 176 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRI 217
>gi|344167567|emb|CCA79805.1| GTP diphosphokinase [blood disease bacterium R229]
Length = 746
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 176 GMARETLDIYAPLANRLGVWQLKWELEDLGFRFEDPDTYKRI 217
>gi|393776779|ref|ZP_10365073.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Ralstonia sp. PBA]
gi|392716136|gb|EIZ03716.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Ralstonia sp. PBA]
Length = 735
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KMR K++ +YD RA RV+V D ++ CY++L
Sbjct: 236 GVRAEVTGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------VKDCYTVLG 286
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 287 IVHHIWHPIPKEFDDYISRPKANGYRSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 346
Query: 296 WLYKETGNK 304
W YKE G+K
Sbjct: 347 WRYKEAGSK 355
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 5/50 (10%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
ALP +A+ETL ++ LA+RLG+W +K ELEDL F +P+I++++
Sbjct: 162 ALP-----GMARETLDVYAPLANRLGIWQIKWELEDLAFRFAEPEIYKRI 206
>gi|386286490|ref|ZP_10063680.1| GTP pyrophosphokinase [gamma proteobacterium BDW918]
gi|385280640|gb|EIF44562.1| GTP pyrophosphokinase [gamma proteobacterium BDW918]
Length = 745
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ ++ R K +YSI+ KM+RK +G +VYD RA+RV+V P + CY+ L
Sbjct: 255 NIQADIAGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRVLV---------PDTKSCYAALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI NPK +GY+SLHTAV GPDG LE+QIRT+ MHE AE G+ +H
Sbjct: 306 LVHGLWRNIPNEFDDYIANPKENGYRSLHTAVIGPDGKVLEIQIRTRAMHEEAEFGVCSH 365
Query: 296 WLYKETGNKLQSISSMDE 313
W+YK +S +S DE
Sbjct: 366 WMYKGADKSAKSSNSYDE 383
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P K VA+E I+ LA RLG+ +K ELEDL F LQP ++K+
Sbjct: 179 PEKRYRVAREVADIYAPLAHRLGIGHIKWELEDLSFRYLQPLAYKKI 225
>gi|300691314|ref|YP_003752309.1| GTP diphosphokinase [Ralstonia solanacearum PSI07]
gi|299078374|emb|CBJ51024.1| GTP diphosphokinase [Ralstonia solanacearum PSI07]
Length = 746
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L T + G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I
Sbjct: 239 LQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------I 289
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L VH +W P+ EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +
Sbjct: 290 KDCYTVLGFVHHMWQPVPREFDDYISRPKANGYKSLHTVVIGDDGRALEVQIRTREMHHF 349
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE G+K
Sbjct: 350 AEYGVAAHWRYKEAGSK 366
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F P ++++
Sbjct: 176 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRI 217
>gi|163856045|ref|YP_001630343.1| GTP pyrophosphokinase [Bordetella petrii DSM 12804]
gi|163259773|emb|CAP42074.1| GTP pyrophosphokinase [Bordetella petrii]
Length = 745
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 94/144 (65%), Gaps = 9/144 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RALRV+V D ++ CY+ L
Sbjct: 251 GIHAEVSGRPKHIYSIWNKMRLKGLEFSQMYDLRALRVIVDD---------VRDCYTALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ EFDDYI PKP+GY+SLHT V DG EVQIRT+ MH++AE+G+AAH
Sbjct: 302 MVHDMWTPLPDEFDDYISRPKPNGYRSLHTVVADDDGRPFEVQIRTRGMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESDIEAS 319
W YKE G K +++ E D + S
Sbjct: 362 WRYKEAGAKGGQVAASSEYDRQLS 385
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A A+ETL ++ LA+RLG+W +K E+EDL F L+P ++++
Sbjct: 180 AFARETLDLYAPLANRLGIWQVKWEMEDLAFRFLEPDRYKQI 221
>gi|445497639|ref|ZP_21464494.1| GTP pyrophosphokinase RelA [Janthinobacterium sp. HH01]
gi|444787634|gb|ELX09182.1| GTP pyrophosphokinase RelA [Janthinobacterium sp. HH01]
Length = 752
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+SKM+ K++ +YD RA RV+V D ++ CY++L
Sbjct: 253 GIQAEVFGRPKHIYSIWSKMKGKELDFTDLYDVRAFRVIVAD---------VKTCYTVLG 303
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI EFDDYI PK +GYQSLHT V DG LEVQIRTQ+MH +AE+G+AAH
Sbjct: 304 VVHNIWTPIPKEFDDYISRPKSNGYQSLHTVVTAEDGRPLEVQIRTQEMHGFAEYGVAAH 363
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE G + DE
Sbjct: 364 WRYKEAGGSNFAGQKYDE 381
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A +ETL ++ LA+RLG+W LK ELEDL F ++P+ ++++
Sbjct: 182 AYGRETLDLYAPLANRLGIWQLKWELEDLSFRFIEPEAYKRI 223
>gi|299066585|emb|CBJ37775.1| GTP diphosphokinase [Ralstonia solanacearum CMR15]
Length = 746
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH +W PI EFDDYI PK +GY+SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 296 WLYKETGNK 304
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 176 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 217
>gi|326316451|ref|YP_004234123.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373287|gb|ADX45556.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 741
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ T+ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 242 ISATVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVVV---------PTVKDCYAALSW 292
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PID EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 293 VHSHFKPIDAEFDDYIAKPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 352
Query: 297 LYKETGNK 304
YKE G K
Sbjct: 353 AYKEAGAK 360
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E L ++ SLA+RLG+W +K ELEDL F L+P ++++
Sbjct: 170 SIAREALQVFASLANRLGIWQMKWELEDLSFRFLEPDTYKQI 211
>gi|83748296|ref|ZP_00945321.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Ralstonia solanacearum UW551]
gi|83725028|gb|EAP72181.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Ralstonia solanacearum UW551]
Length = 792
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 96/153 (62%), Gaps = 17/153 (11%)
Query: 160 EEALEKELLIS--------TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
E+ +E+E I T + G+ +S R K +YSI+ KMR K++ +YD RA
Sbjct: 269 EKRIEREKFIGEAIARLQQTLHDAGIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAF 328
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RV+V D I+ CY++L VH +W PI EFDDYI PK +GY SLHT V G D
Sbjct: 329 RVIVDD---------IKDCYTVLGFVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDD 379
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
G ALEVQIRT++MH +AE+G+AAHW YKE G+K
Sbjct: 380 GRALEVQIRTREMHHFAEYGVAAHWRYKEAGSK 412
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 222 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 263
>gi|300703877|ref|YP_003745479.1| GTP diphosphokinase [Ralstonia solanacearum CFBP2957]
gi|299071540|emb|CBJ42864.1| GTP diphosphokinase [Ralstonia solanacearum CFBP2957]
Length = 746
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 247 GIHAEVSGRPKHIYSIWRKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 297
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH +W PI EFDDYI PK +GY SLHT V G DG ALEVQIRT++MH +AE+G+AAH
Sbjct: 298 FVHHMWQPIPKEFDDYISRPKANGYMSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAH 357
Query: 296 WLYKETGNK 304
W YKE G+K
Sbjct: 358 WRYKEAGSK 366
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W LK ELEDL F ++++
Sbjct: 176 GMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDSDTYKRI 217
>gi|73540969|ref|YP_295489.1| RelA/SpoT protein [Ralstonia eutropha JMP134]
gi|72118382|gb|AAZ60645.1| RelA/SpoT protein [Ralstonia eutropha JMP134]
Length = 741
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 239 GIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 289
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 290 IVHHIWQPIPREFDDYISRPKSNGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 349
Query: 296 WLYKETGNK 304
W YKE G+K
Sbjct: 350 WRYKEAGSK 358
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ETL I+ LA+RLG+W +K ELEDL F QP ++++
Sbjct: 168 GIARETLDIYAPLANRLGIWQMKWELEDLAFRFEQPDTYKRI 209
>gi|399545685|ref|YP_006558993.1| GTP pyrophosphokinase [Marinobacter sp. BSs20148]
gi|399161017|gb|AFP31580.1| GTP pyrophosphokinase [Marinobacter sp. BSs20148]
Length = 743
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 113/181 (62%), Gaps = 19/181 (10%)
Query: 128 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSRLK 186
++LH+ A +K AK++ + + S + ALE EL + G++ +S R+K
Sbjct: 216 RYLHETA----YKKIAKLLDEKRLNRESYIKRVVAALESELGSA-----GIKGDVSGRVK 266
Query: 187 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246
+YSI+ KMRRK + +VYD RA+R++V P ++ CY++L +VH LW I
Sbjct: 267 HIYSIWRKMRRKGIDFSQVYDVRAVRILV---------PEVRDCYAVLGVVHGLWRHIPN 317
Query: 247 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQ 306
EFDDYI N K +GYQSLHTAV GP+G +EVQIRT+ MHE AE G+ AHWLYK T K +
Sbjct: 318 EFDDYIANVKENGYQSLHTAVIGPEGKVMEVQIRTRDMHEEAELGVCAHWLYKGTDTKNK 377
Query: 307 S 307
S
Sbjct: 378 S 378
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
ALP + R VA+E I+ LA RLG+ +K ELEDL F L ++K +A +
Sbjct: 178 ALPEKRMR-VAREVFEIYAPLAHRLGIGYIKWELEDLSFRYLHETAYKK----IAKLLDE 232
Query: 68 R--NRVGYSRRITTIVSS 83
+ NR Y +R+ + S
Sbjct: 233 KRLNRESYIKRVVAALES 250
>gi|452124129|ref|ZP_21936713.1| GTP pyrophosphokinase [Bordetella holmesii F627]
gi|452127514|ref|ZP_21940095.1| GTP pyrophosphokinase [Bordetella holmesii H558]
gi|451923359|gb|EMD73500.1| GTP pyrophosphokinase [Bordetella holmesii F627]
gi|451926794|gb|EMD76924.1| GTP pyrophosphokinase [Bordetella holmesii H558]
Length = 748
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 9/140 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI++KMR K + ++YD RALR++V D ++ CY+ L
Sbjct: 251 GIRGEVSGRPKHIYSIWNKMRLKRLDFSQMYDLRALRIIVDD---------VRDCYAALA 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW+P+ EFDDYI PKP+GY+SLHT V G A EVQIRT +MH++AE+G+AAH
Sbjct: 302 LVHELWVPLQDEFDDYISRPKPNGYRSLHTVVADQQGRAFEVQIRTHEMHQFAEYGMAAH 361
Query: 296 WLYKETGNKLQSISSMDESD 315
W YKE G++ +++ + D
Sbjct: 362 WRYKEAGSRGGQVTASSDYD 381
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+ AQETL ++ LA+RLG+W LK ELEDL F L P ++++
Sbjct: 180 SFAQETLDLYTPLANRLGIWQLKWELEDLSFRFLDPVRYKEI 221
>gi|395762127|ref|ZP_10442796.1| GTP pyrophosphokinase [Janthinobacterium lividum PAMC 25724]
Length = 750
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI++KMR K++ +YD RA RV+V D ++ CY++L
Sbjct: 250 GIEAEVFGRPKHIYSIWNKMRGKELDFTALYDVRAFRVIVAD---------VKTCYTVLG 300
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI EFDDYI PK +GYQSLHT V DG LEVQIRT +MH +AE+G+AAH
Sbjct: 301 VVHNVWTPIPKEFDDYISRPKANGYQSLHTVVTAEDGRPLEVQIRTNEMHSFAEYGVAAH 360
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE G + DE
Sbjct: 361 WRYKEEGGSNFAGQKYDE 378
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +ETL ++ LA+RLG+W LK ELEDL F ++P+ ++++
Sbjct: 178 REYGKETLDLYAPLANRLGIWQLKWELEDLSFRFIEPEAYKRI 220
>gi|374370980|ref|ZP_09628969.1| RelA/SpoT protein [Cupriavidus basilensis OR16]
gi|373097537|gb|EHP38669.1| RelA/SpoT protein [Cupriavidus basilensis OR16]
Length = 717
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 86/124 (69%), Gaps = 9/124 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L IVH +
Sbjct: 222 VSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLGIVHHI 272
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI PK +GY+SLHT V G DG A EVQIRTQ+MH +AE+G+AAHW YKE
Sbjct: 273 WQPIPREFDDYISRPKSNGYKSLHTVVIGDDGRAFEVQIRTQEMHHFAEYGVAAHWRYKE 332
Query: 301 TGNK 304
G+K
Sbjct: 333 AGSK 336
>gi|113867356|ref|YP_725845.1| GTP pyrophosphokinase [Ralstonia eutropha H16]
gi|113526132|emb|CAJ92477.1| GTP pyrophosphokinase [Ralstonia eutropha H16]
Length = 742
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 90/139 (64%), Gaps = 9/139 (6%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E L S G+ +S R K +YSI+ KMR K++ +YD RA RV+V D
Sbjct: 232 ERLQSELATAGIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD-------- 283
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
I+ CY++L IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH
Sbjct: 284 -IKDCYTVLGIVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMH 342
Query: 286 EYAEHGLAAHWLYKETGNK 304
+AE+G+AAHW YKE G++
Sbjct: 343 HFAEYGVAAHWRYKEAGSR 361
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W +K ELEDL F QP ++++
Sbjct: 171 GVARETLDIYAPLANRLGIWQMKWELEDLAFRFEQPDTYKRI 212
>gi|352085537|ref|ZP_08953157.1| RelA/SpoT family protein [Rhodanobacter sp. 2APBS1]
gi|351681958|gb|EHA65072.1| RelA/SpoT family protein [Rhodanobacter sp. 2APBS1]
Length = 710
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 133/296 (44%), Gaps = 98/296 (33%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
ALP + +A+A+ T I LA+RLG+W LK ELEDL FR ++ D
Sbjct: 144 ALPEGERQALARLTRDIHAPLANRLGIWQLKWELEDLA--------FRYLQPD------- 188
Query: 68 RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRT 127
RRI + LDER A R
Sbjct: 189 -----TYRRIANL-----LDERRAD---------------------------------RE 205
Query: 128 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKS 187
F+ D SL + ALE G++ L+ R K
Sbjct: 206 AFIRD----------------------SLAELQRALEAA---------GIQAELAGRPKH 234
Query: 188 LYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGE 247
+YSI+ KM+RK + +YD RA+RV+V + I CY+ L +VH LW + GE
Sbjct: 235 IYSIWKKMQRKSLDFSDLYDIRAVRVLVDN---------ITDCYAALGVVHALWPHLPGE 285
Query: 248 FDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
FDDYI PK +GYQSLHTAV GP G LEVQIRT MH E G+AAHW YKE G+
Sbjct: 286 FDDYIARPKANGYQSLHTAVIGPQGKTLEVQIRTHAMHRANELGVAAHWRYKEGGS 341
>gi|222111668|ref|YP_002553932.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax ebreus TPSY]
gi|221731112|gb|ACM33932.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax ebreus TPSY]
Length = 747
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +V+D RALRVVV P+++ CY+ L
Sbjct: 259 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PSVKDCYAALSW 309
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 310 VHSQFKPIEAEFDDYIARPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 369
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G K +S+ E D
Sbjct: 370 AYKEAGTKGYAGVSASSEYD 389
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+A+E L ++ LA+RLG+W +K ELEDL F L+P+ ++++
Sbjct: 187 AIAREALQVFAPLANRLGIWQMKWELEDLAFRFLEPETYKEV 228
>gi|121595454|ref|YP_987350.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. JS42]
gi|120607534|gb|ABM43274.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax sp. JS42]
Length = 747
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +V+D RALRVVV P+++ CY+ L
Sbjct: 259 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PSVKDCYAALSW 309
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PI+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 310 VHSQFKPIEAEFDDYIARPKPNGYQSLHTVVRDEAGKAIEIQIRTQAMHDHAEHGVAAHW 369
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G K +S+ E D
Sbjct: 370 AYKEAGTKGYAGVSASSEYD 389
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+A+E L ++ LA+RLG+W +K ELEDL F L+P+ ++++
Sbjct: 187 AIAREALQVFAPLANRLGIWQMKWELEDLAFRFLEPETYKEV 228
>gi|71908440|ref|YP_286027.1| RelA/SpoT protein [Dechloromonas aromatica RCB]
gi|71848061|gb|AAZ47557.1| RelA/SpoT protein [Dechloromonas aromatica RCB]
Length = 740
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 97/140 (69%), Gaps = 12/140 (8%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G EV R K +YSI++KMR+KDV +VYD RALR++V D ++ CY+
Sbjct: 255 VKGAEVY--GRPKHIYSIWNKMRKKDVEFSEVYDVRALRIIVDD---------LKDCYTA 303
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L IVH LW+PI EFDDYI NPK + Y+SLHTAV+ PDG +LE+QIRT +MH++AE G+A
Sbjct: 304 LGIVHNLWLPIPREFDDYISNPKGNYYRSLHTAVRCPDGRSLEIQIRTAEMHKHAELGVA 363
Query: 294 AHWLYKETGNKLQSISSMDE 313
AHW YKE G+K + DE
Sbjct: 364 AHWRYKE-GSKRTTEDDYDE 382
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 7 YALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMW 65
YA P + R VA+ETL ++ LA+RLG+W LK ELEDL F + P ++K+ L
Sbjct: 173 YAAHPDELRVQVARETLELYSPLANRLGVWELKWELEDLSFRFIHPDTYKKIAKMLDEKR 232
Query: 66 SPRNR 70
S R +
Sbjct: 233 SEREK 237
>gi|339325467|ref|YP_004685160.1| GTP pyrophosphokinase [Cupriavidus necator N-1]
gi|338165624|gb|AEI76679.1| GTP pyrophosphokinase RelA [Cupriavidus necator N-1]
Length = 742
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 19/180 (10%)
Query: 130 LHDLAKSSEA----QKKAKVVQDAGIALTSLVACE-EALEKELLISTSYIPGMEVTLSSR 184
L DLA E ++ AK++ + I +A E L+ EL +T+ IP +S R
Sbjct: 196 LEDLAFRFEQPDTYKRIAKLLDEKRIEREGYIASAIERLQSEL--ATAGIPA---EVSGR 250
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L IVH +W PI
Sbjct: 251 PKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLGIVHHIWQPI 301
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAHW YKE G++
Sbjct: 302 PREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAHWRYKEAGSR 361
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W +K ELEDL F QP ++++
Sbjct: 171 GVARETLDIYAPLANRLGIWQMKWELEDLAFRFEQPDTYKRI 212
>gi|194289382|ref|YP_002005289.1| (p)ppgpp synthetase i (gtp pyrophosphokinase) [Cupriavidus
taiwanensis LMG 19424]
gi|193223217|emb|CAQ69222.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Cupriavidus
taiwanensis LMG 19424]
Length = 742
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KMR K++ +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVSGRPKHIYSIWKKMRGKELDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 296 WLYKETGNK 304
W YKE G++
Sbjct: 353 WRYKEAGSR 361
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W +K ELEDL F QP ++++
Sbjct: 171 GVARETLDIYAPLANRLGIWQMKWELEDLAFRFEQPDTYKRI 212
>gi|269792823|ref|YP_003317727.1| (p)ppGpp synthetase I SpoT/RelA [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100458|gb|ACZ19445.1| (p)ppGpp synthetase I, SpoT/RelA [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 756
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 88/133 (66%), Gaps = 9/133 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E LS R K YSI+ KMRRK++ + ++YD ALRV+VG + CY +L
Sbjct: 264 GIEAYLSGRPKHFYSIYEKMRRKNLSLDQLYDLLALRVIVG---------TVAECYQVLG 314
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 315 LVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVLGPSGEPLEVQIRTWEMHWLAEYGVAAH 374
Query: 296 WLYKETGNKLQSI 308
W YKE ++ I
Sbjct: 375 WHYKEGKRRVDQI 387
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
K +A+ETL I+ LA RLG++ +K ELEDLCF +L+P I+ ++R
Sbjct: 190 KQITIAKETLEIYAPLAHRLGIYNVKRELEDLCFKILEPDIYYEIR 235
>gi|340786805|ref|YP_004752270.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
gi|340552072|gb|AEK61447.1| GTP pyrophosphokinase [Collimonas fungivorans Ter331]
Length = 757
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI++KM+ K++ ++YD RA RV+V D ++ CY++L I
Sbjct: 251 IKAEVSGRPKHIYSIWNKMQGKELDFSELYDVRAFRVIVDD---------VKTCYTVLGI 301
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH +W+PI EFDDYI PK +GYQSLHT V D ALEVQIRT +MH +AE+G+AAHW
Sbjct: 302 VHNIWVPIPKEFDDYISRPKQNGYQSLHTVVLADDDRALEVQIRTNEMHHFAEYGVAAHW 361
Query: 297 LYKETGNKLQSISSMDE 313
YKE G S DE
Sbjct: 362 RYKEAGGSNFSAQKYDE 378
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ETL ++ LA+RLG+W LK ELEDL F + P ++++
Sbjct: 181 ARETLDLYAPLANRLGIWQLKWELEDLSFRFIDPVTYKRI 220
>gi|217970681|ref|YP_002355915.1| (p)ppGpp synthetase I SpoT/RelA [Thauera sp. MZ1T]
gi|217508008|gb|ACK55019.1| (p)ppGpp synthetase I, SpoT/RelA [Thauera sp. MZ1T]
Length = 734
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 88/125 (70%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E ++ R K +YSI++KMR+K + +V+D RALRV+V P I+ CY++L
Sbjct: 246 GIEAEITGRAKHIYSIYNKMRKKRLDFSQVFDIRALRVLV---------PEIKDCYTVLG 296
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH++W PI EFDDYI PK + YQSLHTAV DG ALEVQIRT MH++AE G+AAH
Sbjct: 297 IVHQMWQPIAKEFDDYITKPKGNNYQSLHTAVLAGDGRALEVQIRTFDMHKHAELGVAAH 356
Query: 296 WLYKE 300
W YKE
Sbjct: 357 WRYKE 361
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 7 YALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
Y P +AR VA+E+L I+ LA+RLG+W +K ELEDL F ++P ++++
Sbjct: 165 YTDLPGEARVEVARESLDIYAPLANRLGVWQIKWELEDLSFRFIEPDTYKRI 216
>gi|152995282|ref|YP_001340117.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas sp. MWYL1]
gi|150836206|gb|ABR70182.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas sp. MWYL1]
Length = 749
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 91/142 (64%), Gaps = 11/142 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+ L R K +YSI+ KM+RK++G +VYD RA+R++V + CY +L
Sbjct: 256 NIHADLMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVDEP---------MECYGVLG 306
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW PI EFDDYI NPK +GYQSLHTAV GP G ALE+QIRT KMHE AE G+ AH
Sbjct: 307 VVHNLWRPIPQEFDDYISNPKSNGYQSLHTAVIGPQGRALEIQIRTHKMHEDAELGVCAH 366
Query: 296 WLYKETGNKLQSISSMDESDIE 317
W YK G L S SS E ++
Sbjct: 367 WKYK--GTDLSSNSSSYEEKLQ 386
>gi|398803829|ref|ZP_10562843.1| (p)ppGpp synthetase, RelA/SpoT family [Polaromonas sp. CF318]
gi|398095693|gb|EJL86028.1| (p)ppGpp synthetase, RelA/SpoT family [Polaromonas sp. CF318]
Length = 753
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 88/141 (62%), Gaps = 10/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI KMR K + +V+D RALRV+ D G CY+ L
Sbjct: 252 GIAALVQGRPKHIYSIVKKMRGKSLDFEQVFDIRALRVIAADVKG---------CYAALG 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + P+DGEFDDYI PK +GYQSLHT V+ G A+E+Q+RTQ MH++AEHG+AAH
Sbjct: 303 YVHSRFTPVDGEFDDYIAKPKSNGYQSLHTVVRDEAGRAVEIQVRTQAMHDHAEHGVAAH 362
Query: 296 WLYKETGNK-LQSISSMDESD 315
W YKE G K +S+ E D
Sbjct: 363 WAYKEAGTKGYGGVSASSEYD 383
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRK 56
+A E+L ++ LA+RLG+W +K E+EDL F L+P+ +++
Sbjct: 182 LAYESLHVFAPLANRLGIWQIKWEMEDLAFRFLEPETYKQ 221
>gi|394988989|ref|ZP_10381824.1| hypothetical protein SCD_01404 [Sulfuricella denitrificans skB26]
gi|393792368|dbj|GAB71463.1| hypothetical protein SCD_01404 [Sulfuricella denitrificans skB26]
Length = 728
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 92/140 (65%), Gaps = 9/140 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
+E L + G+ +S R K +YSI+ KM+RK V +VYD RA+RV+V D
Sbjct: 235 REQLRQELHKNGVVAEVSGRPKHIYSIYKKMKRKGVDFSEVYDVRAVRVLVND------- 287
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
++ CY+ L +VH LW PI GEFDDYI +PK + Y+SLHTAV GP+ ALEVQIRT M
Sbjct: 288 --LKDCYTALGVVHSLWQPIPGEFDDYIAHPKGNDYRSLHTAVVGPEEKALEVQIRTHDM 345
Query: 285 HEYAEHGLAAHWLYKETGNK 304
H +AE G+AAHW YKE G +
Sbjct: 346 HNHAELGVAAHWRYKEGGRQ 365
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
E S+A + R VA E I+ LA+RLG+W +K ELEDL F L+P +++K+
Sbjct: 164 ELSHADEDTRHR-VAHEVQDIFAPLANRLGVWQVKWELEDLSFRYLEPDLYKKI 216
>gi|372268561|ref|ZP_09504609.1| GTP pyrophosphokinase [Alteromonas sp. S89]
Length = 723
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 98/159 (61%), Gaps = 15/159 (9%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KMRRK++G +VYD RA+R++V P ++ CY++L IVH LW
Sbjct: 239 GRAKHIYSIWRKMRRKNIGFSQVYDIRAVRILV---------PTVRDCYAVLGIVHNLWR 289
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDYI +PK +GY+SLHTAV GPD LEVQIRT MHE AE+G+ AHW YK T
Sbjct: 290 NIPNEFDDYIASPKENGYRSLHTAVIGPDRKVLEVQIRTFAMHEEAEYGVCAHWRYKGTD 349
Query: 303 NKLQSISSMDESDIEASSSLSKDTDDH-----NPLDTDL 336
K + D + + S L + D H NPL DL
Sbjct: 350 KKSGQLEGQDGYE-QKISWLRQVLDWHEEVGGNPLQDDL 387
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
AK R VA+E ++ LA RLG+ +K ELEDL F L+P + ++
Sbjct: 157 AKRRRVAREVADVYAPLAHRLGIGHIKWELEDLAFRYLEPDDYMQI 202
>gi|329907906|ref|ZP_08274732.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
gi|327546888|gb|EGF31806.1| GTP pyrophosphokinase [Oxalobacteraceae bacterium IMCC9480]
Length = 757
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI++KMR K + ++D RA RV+V D ++ CY++L
Sbjct: 248 GIEAEVFGRPKHIYSIWNKMRGKAIDFSSLHDVRAFRVIVDD---------VKTCYAVLG 298
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W P+ EFDDYI PKP+GYQSLHT V DG LE+QIRT++MH +AE+G+AAH
Sbjct: 299 IVHDNWAPVPEEFDDYIARPKPNGYQSLHTIVMAEDGRPLEIQIRTKEMHYFAEYGVAAH 358
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE+G + DE
Sbjct: 359 WRYKESGGSNFAAQKYDE 376
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ETL ++ LA+RLG+W LK E+EDL F L+P ++++
Sbjct: 179 ARETLDLYAPLANRLGVWQLKWEMEDLSFRFLEPAAYKQI 218
>gi|407939728|ref|YP_006855369.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. KKS102]
gi|407897522|gb|AFU46731.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. KKS102]
Length = 737
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 90/140 (64%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ T++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISATVAGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PTVKDCYAALSW 299
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PI EFDDYI PKP+GYQSLHT V+ +G +E+QIRTQ MHE+AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDNGKPIEIQIRTQAMHEHAEHGVAAHW 359
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G K +S+ E D
Sbjct: 360 AYKEAGAKGYAGVSATGEYD 379
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E+L ++ LA+RLG+W +K ELEDL F L+P ++++
Sbjct: 177 SLARESLQVFAPLANRLGIWQVKWELEDLSFRFLEPDTYKEV 218
>gi|347819089|ref|ZP_08872523.1| (p)ppGpp synthetase I SpoT/RelA [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 737
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +V+D RALRV+V P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PTVKDCYAALSW 299
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH PI EFDDYI PKP+GYQSLHT V+ DG +E+QIRTQ MHE+AEHG+AAHW
Sbjct: 300 VHEQLQPIVEEFDDYIARPKPNGYQSLHTIVRDADGRPIEIQIRTQAMHEHAEHGVAAHW 359
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE GNK +S+ E D
Sbjct: 360 AYKEAGNKGYAGVSAAGEYD 379
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E+L ++ LA+RLG+W LK ELEDL L+P ++K+
Sbjct: 177 SMARESLQVFAPLANRLGIWQLKWELEDLALRFLEPDTYKKV 218
>gi|149923136|ref|ZP_01911550.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Plesiocystis pacifica SIR-1]
gi|149815974|gb|EDM75489.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Plesiocystis pacifica SIR-1]
Length = 741
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 107/180 (59%), Gaps = 11/180 (6%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E LE+EL + ++ ++ R K +YSI KMRRK VG ++D A+RV+V D G
Sbjct: 233 ETLERELAEAE-----LDAEVNGRPKHIYSIVKKMRRKGVGFEDIFDVTAVRVIV-DGEG 286
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
+ + CY+ L +VH LW PI EFDDYI PK +GYQSLHTAV GP G LE+QIR
Sbjct: 287 KV---GKRDCYAALGLVHGLWNPIASEFDDYIARPKDNGYQSLHTAVVGPGGEPLEIQIR 343
Query: 281 TQKMHEYAEHGLAAHWLYKE--TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQ 338
T++MH +AE+G+AAHW YKE G K ++ ++ L + L TDLF+
Sbjct: 344 TRQMHLFAEYGVAAHWAYKEGKRGAKQMERFNLLRQLVDWQKQLVDPKELAEALKTDLFE 403
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
R +A ET ++ LA+RLG+W LK ELEDL L P+ +R + L++ + R RV
Sbjct: 171 RRIATETREVFAPLANRLGIWQLKWELEDLAMRELDPEQYRDITTKLSTKRAERQRV 227
>gi|282857439|ref|ZP_06266672.1| GTP diphosphokinase [Pyramidobacter piscolens W5455]
gi|282584724|gb|EFB90059.1| GTP diphosphokinase [Pyramidobacter piscolens W5455]
Length = 816
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSIF KM RK + + ++YD ALRV+V D + CY++L
Sbjct: 325 GIEAHIKGRAKHFYSIFEKMNRKKLSVEQLYDLLALRVIVND---------VTTCYTVLG 375
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G+FDDYI NPK + Y+SLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 376 IVHTLWKPIPGQFDDYIANPKNNMYRSLHTTVMGPQGEPLEVQIRTWEMHWLAEYGVAAH 435
Query: 296 WLYKE 300
W YKE
Sbjct: 436 WRYKE 440
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
AL K + +A+ETL I+ LA RLG++ +K LEDL F P ++ ++
Sbjct: 246 ALRRDKQQRIAKETLEIYAPLAHRLGIYQVKRTLEDLAFKYYDPTMYYDIK 296
>gi|94310104|ref|YP_583314.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus
metallidurans CH34]
gi|93353956|gb|ABF08045.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus
metallidurans CH34]
Length = 742
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KMR K + +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVTGRPKHIYSIWKKMRGKALDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 296 WLYKETGNK 304
W YKE G K
Sbjct: 353 WRYKEAGGK 361
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W +K ELEDL F QP+ ++++
Sbjct: 171 GVARETLDIYAPLANRLGIWQMKWELEDLAFRFEQPETYKRI 212
>gi|254481349|ref|ZP_05094594.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
gi|214038512|gb|EEB79174.1| RelA/SpoT family protein [marine gamma proteobacterium HTCC2148]
Length = 706
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 95/149 (63%), Gaps = 9/149 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
K LL G+E + R K +YSI+ KM+RK +G +VYD RA+R++V
Sbjct: 208 KALLTDVLQQAGLEFEIEGRAKHIYSIWRKMQRKGIGFSQVYDIRAVRILV--------- 258
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
P I+ CY+ L +VH LW I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++M
Sbjct: 259 PEIKDCYATLGLVHGLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTRQM 318
Query: 285 HEYAEHGLAAHWLYKETGNKLQSISSMDE 313
HE AE G+ AHW YK + + SS +E
Sbjct: 319 HEEAELGVCAHWRYKGSDSTPGMASSYEE 347
>gi|333909014|ref|YP_004482600.1| (p)ppGpp synthetase I SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
gi|333479020|gb|AEF55681.1| (p)ppGpp synthetase I, SpoT/RelA [Marinomonas posidonica
IVIA-Po-181]
Length = 751
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 91/142 (64%), Gaps = 11/142 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+ L R K +YSI+ KM+RK++G +VYD RA+R++V + CY +L
Sbjct: 256 NIHADLMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILVDEP---------MECYGVLG 306
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW PI EFDDYI NPK +GYQSLHTAV GP G ALE+QIRT KMHE AE G+ AH
Sbjct: 307 VVHNLWRPIPQEFDDYISNPKSNGYQSLHTAVVGPQGRALEIQIRTHKMHEDAELGVCAH 366
Query: 296 WLYKETGNKLQSISSMDESDIE 317
W YK G L S S+ E ++
Sbjct: 367 WKYK--GTDLSSNSTSYEEKLQ 386
>gi|254785342|ref|YP_003072771.1| GTP pyrophosphokinase [Teredinibacter turnerae T7901]
gi|237686776|gb|ACR14040.1| GTP pyrophosphokinase [Teredinibacter turnerae T7901]
Length = 747
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KMRRK++G +VYD RA+R++V + + CY++L
Sbjct: 259 GVEAHIYGRAKHIYSIWRKMRRKNIGFSEVYDIRAVRILVNSE---------RECYTVLG 309
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+ LEVQIRT+ MH+ AE+G+ AH
Sbjct: 310 IVHALWRNIPREFDDYIANPKENGYRSLHTAVNGPNNQVLEVQIRTRTMHDEAEYGVCAH 369
Query: 296 WLYKET 301
W YK+T
Sbjct: 370 WRYKDT 375
>gi|357419457|ref|YP_004932449.1| (p)ppGpp synthetase I SpoT/RelA [Thermovirga lienii DSM 17291]
gi|355396923|gb|AER66352.1| (p)ppGpp synthetase I, SpoT/RelA [Thermovirga lienii DSM 17291]
Length = 775
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K YSI+ KMRRK++ + +++D ALRV+V D + CY++L
Sbjct: 280 GIKAHITGRAKHFYSIYEKMRRKNLSLEELFDLLALRVIVDD---------VATCYTVLG 330
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ G+FDDYI NPK + YQSLHTAV GP G LEVQIRT MH AE+G+A+H
Sbjct: 331 VVHTIWKPLPGQFDDYIANPKSNMYQSLHTAVIGPSGEPLEVQIRTWDMHWLAEYGVASH 390
Query: 296 WLYKETGNKLQSI 308
W YKE KL +
Sbjct: 391 WRYKEGKQKLDEL 403
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+A+ETL I+ LA RLG++ +K ELED F + P+ + +R
Sbjct: 210 IAKETLEIYAPLAHRLGIYQIKRELEDAAFKIADPEAYYDIR 251
>gi|375105841|ref|ZP_09752102.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderiales bacterium
JOSHI_001]
gi|374666572|gb|EHR71357.1| (p)ppGpp synthetase, RelA/SpoT family [Burkholderiales bacterium
JOSHI_001]
Length = 741
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM+ K + +V+D RALRV+V D + CY+ L
Sbjct: 242 GIGADVQGRPKHIYSIWKKMQGKRLHFEQVFDLRALRVIVAD---------VPACYAALA 292
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH+ + P+DGEFDDYI PK +GYQSLHT V DG +E+QIRT+ MH++AEHG+AAH
Sbjct: 293 IVHQRYRPVDGEFDDYIARPKANGYQSLHTVVLAEDGREVEIQIRTRAMHDHAEHGVAAH 352
Query: 296 WLYKETGNK 304
W YKE G K
Sbjct: 353 WAYKEAGTK 361
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A PPA +A E+ ++ LA+RLG+W +K E+EDL F LQP ++ +
Sbjct: 167 ACPPA----LAWESQQVFAPLANRLGIWQIKWEMEDLAFRFLQPDDYKHV 212
>gi|365175246|ref|ZP_09362677.1| RelA/SpoT family protein [Synergistes sp. 3_1_syn1]
gi|363613138|gb|EHL64661.1| RelA/SpoT family protein [Synergistes sp. 3_1_syn1]
Length = 784
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 89/133 (66%), Gaps = 9/133 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+ ++ R K YSI+ KMRRK++ + ++YD ALRV+V I CY +L
Sbjct: 281 NINASIKGRPKHFYSIYEKMRRKNLSLEQLYDLLALRVIV---------KTIGECYQVLG 331
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI G FDDYI NPK + YQSLHT V GP+G LEVQIRT++MH AE+G+AAH
Sbjct: 332 LVHTIWKPIPGLFDDYIANPKSNMYQSLHTTVVGPEGEPLEVQIRTKEMHLLAEYGIAAH 391
Query: 296 WLYKETGNKLQSI 308
W YKE G+K+ ++
Sbjct: 392 WNYKEGGHKVDNL 404
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF----RKMRADL 61
K ++A+ETL I+ LA RLG++ +K ELEDL F +L P+++ R++R L
Sbjct: 207 KQLSIARETLEIYAPLAHRLGIYQVKRELEDLSFRILDPEMYYDIKRRVRKKL 259
>gi|389798715|ref|ZP_10201725.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 116-2]
gi|388444397|gb|EIM00510.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 116-2]
Length = 710
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 132/296 (44%), Gaps = 98/296 (33%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
A P + +A+A+ T I LA+RLG+W LK ELEDL FR ++ D
Sbjct: 144 ARPEGERQALARLTRDIHAPLANRLGIWQLKWELEDLA--------FRYLQPD------- 188
Query: 68 RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRT 127
RRI + LDER A R
Sbjct: 189 -----TYRRIANL-----LDERRAD---------------------------------RE 205
Query: 128 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKS 187
F+ D SL + ALE G++ L+ R K
Sbjct: 206 AFIRD----------------------SLAELQRALEAA---------GIQAELAGRPKH 234
Query: 188 LYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGE 247
+YSI+ KM+RK + +YD RA+RV+V + I CY+ L +VH LW + GE
Sbjct: 235 IYSIWKKMQRKSLDFSDLYDIRAVRVLVDN---------ITDCYAALGVVHALWPHLPGE 285
Query: 248 FDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
FDDYI PK +GYQSLHTAV GP G LEVQIRT MH E G+AAHW YKE G+
Sbjct: 286 FDDYIARPKANGYQSLHTAVIGPQGKTLEVQIRTHAMHRANELGVAAHWRYKEGGS 341
>gi|226945754|ref|YP_002800827.1| RelA/SpoT protein [Azotobacter vinelandii DJ]
gi|226720681|gb|ACO79852.1| RelA/SpoT protein [Azotobacter vinelandii DJ]
Length = 749
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADINGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GPDG LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHSLWRHIPREFDDYIANPKENGYRSLHTAVIGPDGKTLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G L+S SS E I
Sbjct: 366 WRYK--GTDLKSTSSHYEEKI 384
>gi|430809513|ref|ZP_19436628.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus sp. HMR-1]
gi|429498027|gb|EKZ96543.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Cupriavidus sp. HMR-1]
Length = 742
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KMR K + +YD RA RV+V D I+ CY++L
Sbjct: 242 GIRAEVTGRPKHIYSIWKKMRGKALDFADLYDVRAFRVIVDD---------IKDCYTVLG 292
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI EFDDYI PK +GY+SLHT V G DG A EVQIRT +MH +AE+G+AAH
Sbjct: 293 IVHHIWQPIPREFDDYISRPKANGYKSLHTVVIGDDGRAFEVQIRTHEMHHFAEYGVAAH 352
Query: 296 WLYKETGNK 304
W YKE G +
Sbjct: 353 WRYKEAGGR 361
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+ETL I+ LA+RLG+W +K ELEDL F QP+ ++++
Sbjct: 171 GVARETLDIYAPLANRLGIWQMKWELEDLAFRFEQPETYKRI 212
>gi|87118649|ref|ZP_01074548.1| RelA/SpoT protein [Marinomonas sp. MED121]
gi|86166283|gb|EAQ67549.1| RelA/SpoT protein [Marinomonas sp. MED121]
Length = 747
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 88/130 (67%), Gaps = 11/130 (8%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
L R K +YSI+ KM+RK++G +VYD RA+R++V DK CY +L VH L
Sbjct: 261 LMGRAKHIYSIWRKMKRKNIGFDEVYDVRAVRILV-DKT--------MDCYGVLGTVHTL 311
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI NPK +GYQSLHTAV GP+G A+E+QIRT KMHE AE G+ AHW YK
Sbjct: 312 WKPIPHEFDDYISNPKSNGYQSLHTAVVGPNGRAVEIQIRTHKMHEDAELGVCAHWKYK- 370
Query: 301 TGNKLQSISS 310
G L S SS
Sbjct: 371 -GTDLSSNSS 379
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
A+ AVA E ++ LA RLG+ +K ELEDL F L P ++++ + W R+
Sbjct: 181 ARREAVALEVQSVYAPLAHRLGIGYIKWELEDLSFRYLYPVEYKRV-----AKWLDEKRI 235
Query: 72 GYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
I ++S+ ++ + + +H+ S+ + + + FD + D R
Sbjct: 236 ARQEYIDEVISTLDIELQKINIHADLMGRAKHIYSIWRKMKRKNIGFDEVYDVR 289
>gi|332524801|ref|ZP_08400994.1| GTP diphosphokinase [Rubrivivax benzoatilyticus JA2]
gi|332108103|gb|EGJ09327.1| GTP diphosphokinase [Rubrivivax benzoatilyticus JA2]
Length = 744
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K L+SI+ KMR K + I +V+D ALRV+V D G CY+ L
Sbjct: 247 GIRAEVHGRPKHLHSIWKKMRGKGLPIERVFDLSALRVIVDDVAG---------CYAALS 297
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + +DGE+DDYI PKP+GYQSLHT V DG ALEVQIRT+ MHE+AEHG+AAH
Sbjct: 298 RVHECFRAVDGEYDDYIARPKPNGYQSLHTVVLDDDGRALEVQIRTRAMHEHAEHGVAAH 357
Query: 296 WLYKETG 302
W+YKE G
Sbjct: 358 WMYKEAG 364
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ET I+ LA+RLG+W +K ELEDL F LQP+ ++++
Sbjct: 177 LAEETQQIFAPLANRLGIWQIKWELEDLAFRFLQPEEYKRI 217
>gi|383758537|ref|YP_005437522.1| GTP pyrophosphokinase RelA [Rubrivivax gelatinosus IL144]
gi|381379206|dbj|BAL96023.1| GTP pyrophosphokinase RelA [Rubrivivax gelatinosus IL144]
Length = 745
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K L+SI+ KMR K + I +V+D ALRV+V D G CY+ L
Sbjct: 247 GLRAEVYGRPKHLHSIWKKMRGKGLPIERVFDLSALRVIVDDVAG---------CYAALS 297
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + +DGE+DDYI PKP+GYQSLHT V DG ALEVQIRT+ MHE+AEHG+AAH
Sbjct: 298 RVHECYRAVDGEYDDYIARPKPNGYQSLHTVVLDDDGRALEVQIRTRAMHEHAEHGVAAH 357
Query: 296 WLYKETG 302
W+YKE G
Sbjct: 358 WMYKEAG 364
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ET I+ LA+RLG+W +K ELEDL F LQP ++++
Sbjct: 177 LAEETQQIFAPLANRLGIWQIKWELEDLAFRFLQPDEYKRI 217
>gi|404400825|ref|ZP_10992409.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas fuscovaginae UPB0736]
Length = 746
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 102/164 (62%), Gaps = 18/164 (10%)
Query: 153 LTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 212
S V C+ LE ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+R
Sbjct: 238 FISEVMCQ--LENELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVR 290
Query: 213 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 272
V+V P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G
Sbjct: 291 VLV---------PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEG 341
Query: 273 SALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 316
LEVQIRT MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 342 KVLEVQIRTHAMHEEAELGVCAHWKYK--GTDVKSGSNHYEEKI 383
>gi|160872046|ref|ZP_02062178.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Rickettsiella
grylli]
gi|159120845|gb|EDP46183.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Rickettsiella
grylli]
Length = 736
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 9/121 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R+K +YSI+ KM++K + ++YD A+R++V ++ CY +L I+H LW P
Sbjct: 255 RVKHIYSIYKKMQQKKLKFEELYDLNAIRILVS---------TVRDCYHVLSIIHNLWSP 305
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
I G+FDDYI PKP+GY+S+HTAV GP LE+QIRTQ+MH+ +EHGLAAHW YKET
Sbjct: 306 IAGQFDDYISTPKPNGYRSIHTAVIGPHKKVLEIQIRTQQMHQESEHGLAAHWQYKETAQ 365
Query: 304 K 304
+
Sbjct: 366 Q 366
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A A+ETL I+ SLA+RLG+ L+ ELEDL L+P ++ ++
Sbjct: 173 SQAYARETLDIYASLANRLGVGQLQWELEDLSLHYLEPTVYTQI 216
>gi|325266683|ref|ZP_08133360.1| GTP diphosphokinase [Kingella denitrificans ATCC 33394]
gi|324982126|gb|EGC17761.1| GTP diphosphokinase [Kingella denitrificans ATCC 33394]
Length = 726
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E ++ R K +YSI+ KM +K + +YD RA+RV+V + CYS+L
Sbjct: 242 GIECDVAGRPKHIYSIYRKMVKKKLDFDGLYDIRAVRVLVN---------TVPECYSVLG 292
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 293 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTNEMHEFNEFGVAAH 352
Query: 296 WLYKETG 302
W YKE G
Sbjct: 353 WRYKEGG 359
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PAK RA+A+ETL I+ LA+RLG+W LK +LEDL F P+ +R++
Sbjct: 167 PAK-RALAKETLDIFAPLANRLGVWQLKWQLEDLGFRHYNPEEYRRI 212
>gi|134095007|ref|YP_001100082.1| (p)ppGpp synthetase I [Herminiimonas arsenicoxydans]
gi|133738910|emb|CAL61957.1| GTP pyrophosphokinase [Herminiimonas arsenicoxydans]
Length = 761
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 17/162 (10%)
Query: 160 EEALEKELLISTSY--------IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
E+ +E+E + S G++ + R K ++SI+SK+R K++ +YD RA
Sbjct: 231 EKRVEREAFVENSIKRLKSEMAAAGIKAEVFGRPKHIFSIWSKLRGKEIEFSDLYDVRAF 290
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RV+V D ++ CY++L IVH +W PI EFDDYI PK +GYQSLHT V D
Sbjct: 291 RVIVDD---------VKTCYTVLGIVHNIWTPIPEEFDDYISRPKANGYQSLHTIVIAED 341
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 313
G LEVQ+RT MH++AE+G+AAHW YKE+G + DE
Sbjct: 342 GRPLEVQVRTNDMHDFAEYGVAAHWRYKESGGSNFAGQKYDE 383
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++R A+ET ++ LA+RLG+W LK ELEDL F L+P+ +R++
Sbjct: 181 RSRQYARETFDLYAPLANRLGIWQLKWELEDLSFRFLEPEAYRRI 225
>gi|333899695|ref|YP_004473568.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas fulva 12-X]
gi|333114960|gb|AEF21474.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas fulva 12-X]
Length = 748
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 93/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V PA++ CY+ L
Sbjct: 256 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PAVRDCYTALG 306
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTSNMHEEAELGVCAH 366
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 367 WRYK--GTDVKSGSNHYEEKI 385
>gi|288574632|ref|ZP_06392989.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570373|gb|EFC91930.1| (p)ppGpp synthetase I, SpoT/RelA [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 753
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI KM RK + + ++YD A+R++V D I CY++L
Sbjct: 262 GIDALIKGRAKHFYSILEKMNRKGLSVDQLYDLLAMRIIVDD---------ITTCYTVLG 312
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 313 IVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVVGPSGEPLEVQIRTWEMHWLAEYGVAAH 372
Query: 296 WLYKETGNKLQSISS 310
W YKE +K+ + +
Sbjct: 373 WRYKEGADKMDDLDA 387
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
AL K + +A+ETL I+ LA RLG++ +K LEDL F P ++ +++
Sbjct: 183 ALRKDKQQRIAKETLEIYAPLAHRLGIYQVKRTLEDLAFKYYDPNMYYEIK 233
>gi|420141146|ref|ZP_14648853.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CIG1]
gi|403246117|gb|EJY59866.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CIG1]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 285 HEYAEHGLAAHWLYKETGNKLQS 307
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
>gi|408480593|ref|ZP_11186812.1| GTP pyrophosphokinase, partial [Pseudomonas sp. R81]
Length = 599
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
>gi|15596131|ref|NP_249625.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
gi|107100390|ref|ZP_01364308.1| hypothetical protein PaerPA_01001415 [Pseudomonas aeruginosa PACS2]
gi|116048857|ref|YP_792342.1| GTP pyrophosphokinase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893097|ref|YP_002441966.1| GTP pyrophosphokinase [Pseudomonas aeruginosa LESB58]
gi|254245218|ref|ZP_04938540.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 2192]
gi|296390712|ref|ZP_06880187.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAb1]
gi|313105818|ref|ZP_07792081.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 39016]
gi|355647570|ref|ZP_09055107.1| hypothetical protein HMPREF1030_04193 [Pseudomonas sp. 2_1_26]
gi|386060166|ref|YP_005976688.1| GTP pyrophosphokinase [Pseudomonas aeruginosa M18]
gi|386064659|ref|YP_005979963.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCGM2.S1]
gi|392985589|ref|YP_006484176.1| GTP pyrophosphokinase [Pseudomonas aeruginosa DK2]
gi|416858716|ref|ZP_11913485.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 138244]
gi|416875655|ref|ZP_11918813.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 152504]
gi|418583603|ref|ZP_13147672.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P1]
gi|418588968|ref|ZP_13152898.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P2]
gi|419753887|ref|ZP_14280285.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PADK2_CF510]
gi|421162455|ref|ZP_15621297.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 25324]
gi|421169697|ref|ZP_15627704.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 700888]
gi|421176068|ref|ZP_15633737.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CI27]
gi|421182068|ref|ZP_15639553.1| GTP pyrophosphokinase [Pseudomonas aeruginosa E2]
gi|421515556|ref|ZP_15962242.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO579]
gi|424940017|ref|ZP_18355780.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCMG1179]
gi|451987418|ref|ZP_21935576.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas aeruginosa 18A]
gi|9946839|gb|AAG04323.1|AE004528_1 GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
gi|115584078|gb|ABJ10093.1| GTP pyrophosphokinase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126198596|gb|EAZ62659.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 2192]
gi|218773325|emb|CAW29137.1| GTP pyrophosphokinase [Pseudomonas aeruginosa LESB58]
gi|310878583|gb|EFQ37177.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 39016]
gi|334839201|gb|EGM17894.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 138244]
gi|334841754|gb|EGM20376.1| GTP pyrophosphokinase [Pseudomonas aeruginosa 152504]
gi|346056463|dbj|GAA16346.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCMG1179]
gi|347306472|gb|AEO76586.1| GTP pyrophosphokinase [Pseudomonas aeruginosa M18]
gi|348033218|dbj|BAK88578.1| GTP pyrophosphokinase [Pseudomonas aeruginosa NCGM2.S1]
gi|354827764|gb|EHF11903.1| hypothetical protein HMPREF1030_04193 [Pseudomonas sp. 2_1_26]
gi|375047211|gb|EHS39760.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P1]
gi|375052127|gb|EHS44586.1| GTP pyrophosphokinase [Pseudomonas aeruginosa MPAO1/P2]
gi|384399826|gb|EIE46191.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321094|gb|AFM66474.1| GTP pyrophosphokinase [Pseudomonas aeruginosa DK2]
gi|404349284|gb|EJZ75621.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PAO579]
gi|404525836|gb|EKA36084.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 700888]
gi|404531419|gb|EKA41374.1| GTP pyrophosphokinase [Pseudomonas aeruginosa CI27]
gi|404534535|gb|EKA44267.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 25324]
gi|404542788|gb|EKA52097.1| GTP pyrophosphokinase [Pseudomonas aeruginosa E2]
gi|451755036|emb|CCQ88099.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas aeruginosa 18A]
gi|453047959|gb|EME95672.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA21_ST175]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 285 HEYAEHGLAAHWLYKETGNKLQS 307
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
>gi|152985899|ref|YP_001349924.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA7]
gi|150961057|gb|ABR83082.1| GTP pyrophosphokinase [Pseudomonas aeruginosa PA7]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 285 HEYAEHGLAAHWLYKETGNKLQS 307
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
>gi|254239285|ref|ZP_04932608.1| GTP pyrophosphokinase [Pseudomonas aeruginosa C3719]
gi|126171216|gb|EAZ56727.1| GTP pyrophosphokinase [Pseudomonas aeruginosa C3719]
Length = 747
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 285 HEYAEHGLAAHWLYKETGNKLQS 307
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
>gi|443469722|ref|ZP_21059876.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes KF707]
gi|442899174|gb|ELS25705.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes KF707]
Length = 748
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GPDG LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPDGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKSSS 377
>gi|330826152|ref|YP_004389455.1| (p)ppGpp synthetase I SpoT/RelA [Alicycliphilus denitrificans K601]
gi|329311524|gb|AEB85939.1| (p)ppGpp synthetase I, SpoT/RelA [Alicycliphilus denitrificans
K601]
Length = 748
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++S R K +YSI KMR K + +V+D RALRV+V P+++ CY+ L
Sbjct: 260 ISASVSGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PSVKDCYAALSW 310
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + I+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 311 VHSQFTSIEAEFDDYIARPKPNGYQSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHW 370
Query: 297 LYKETGNK 304
YKE G K
Sbjct: 371 AYKEAGTK 378
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+A+E L ++ LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 188 AIAREALQVFAPLANRLGIWQMKWELEDLAFRFLEPDTYREV 229
>gi|320594365|gb|ADW54434.1| RelA [Pseudomonas sp. DF41]
gi|342674037|gb|AEL31268.1| RelA [Pseudomonas chlororaphis]
Length = 747
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 92/143 (64%), Gaps = 13/143 (9%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
KE L +T G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 248 KEALAAT----GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV--------- 294
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT M
Sbjct: 295 PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSM 354
Query: 285 HEYAEHGLAAHWLYKETGNKLQS 307
HE AE G+ AHW YK T K S
Sbjct: 355 HEEAELGVCAHWRYKGTDVKASS 377
>gi|294101598|ref|YP_003553456.1| (p)ppGpp synthetase I SpoT/RelA [Aminobacterium colombiense DSM
12261]
gi|293616578|gb|ADE56732.1| (p)ppGpp synthetase I, SpoT/RelA [Aminobacterium colombiense DSM
12261]
Length = 734
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 9/130 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K YSI+ KM RK + + ++YD ALRVVV D + CY++L IVH +
Sbjct: 251 VKGRAKHFYSIYEKMNRKKLPVEQLYDLLALRVVVDD---------VAACYTVLGIVHTI 301
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI G+FDDYI NPK + YQSLHT V GP G LEVQIR+ +M+ AE+G+AAHW YKE
Sbjct: 302 WKPIPGQFDDYIANPKTNMYQSLHTTVVGPTGEPLEVQIRSAEMNRLAEYGIAAHWRYKE 361
Query: 301 TGNKLQSISS 310
GN L + +
Sbjct: 362 GGNVLDDLDA 371
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
AL K +A+ETL I+ LA RLG++ +K LEDL F P ++ ++R
Sbjct: 167 ALRRDKQLRIAKETLEIYAPLAHRLGIYQVKRGLEDLAFKYSDPDMYYEIR 217
>gi|319762029|ref|YP_004125966.1| rela/spot family protein [Alicycliphilus denitrificans BC]
gi|317116590|gb|ADU99078.1| RelA/SpoT family protein [Alicycliphilus denitrificans BC]
Length = 748
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++S R K +YSI KMR K + +V+D RALRV+V P+++ CY+ L
Sbjct: 260 ISASVSGRPKHIYSIVKKMRGKSLDFDQVFDIRALRVIV---------PSVKDCYAALSW 310
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + I+ EFDDYI PKP+GYQSLHT V+ G A+E+QIRTQ MH++AEHG+AAHW
Sbjct: 311 VHSQFTSIEAEFDDYIARPKPNGYQSLHTVVRDEAGRAIEIQIRTQAMHDHAEHGVAAHW 370
Query: 297 LYKETGNK 304
YKE G K
Sbjct: 371 AYKEAGTK 378
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+A+E L ++ LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 188 AIAREALQVFAPLANRLGIWQMKWELEDLAFRFLEPDTYREV 229
>gi|229591916|ref|YP_002874035.1| GTP pyrophosphokinase [Pseudomonas fluorescens SBW25]
gi|229363782|emb|CAY51208.1| GTP pyrophosphokinase [Pseudomonas fluorescens SBW25]
Length = 747
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
>gi|399521243|ref|ZP_10761983.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110481|emb|CCH38542.1| GTP pyrophosphokinase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 747
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRALRVLV---------PEVRDCYTTLG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|440736805|ref|ZP_20916390.1| GTP pyrophosphokinase [Pseudomonas fluorescens BRIP34879]
gi|447917681|ref|YP_007398249.1| GTP pyrophosphokinase [Pseudomonas poae RE*1-1-14]
gi|440382737|gb|ELQ19229.1| GTP pyrophosphokinase [Pseudomonas fluorescens BRIP34879]
gi|445201544|gb|AGE26753.1| GTP pyrophosphokinase [Pseudomonas poae RE*1-1-14]
Length = 747
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
>gi|395798927|ref|ZP_10478210.1| GTP pyrophosphokinase [Pseudomonas sp. Ag1]
gi|395337161|gb|EJF69019.1| GTP pyrophosphokinase [Pseudomonas sp. Ag1]
Length = 747
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
>gi|421139488|ref|ZP_15599527.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
BBc6R8]
gi|404509404|gb|EKA23335.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
BBc6R8]
Length = 747
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
>gi|395500048|ref|ZP_10431627.1| GTP pyrophosphokinase [Pseudomonas sp. PAMC 25886]
Length = 747
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
>gi|410092308|ref|ZP_11288837.1| RelA/SpoT protein [Pseudomonas viridiflava UASWS0038]
gi|409760333|gb|EKN45487.1| RelA/SpoT protein [Pseudomonas viridiflava UASWS0038]
Length = 747
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 91/142 (64%), Gaps = 14/142 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
LE ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LENELLAT-----GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNK 304
MHE AE G+ AHW YK T K
Sbjct: 353 SMHEEAELGVCAHWRYKGTDVK 374
>gi|339486235|ref|YP_004700763.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida S16]
gi|338837078|gb|AEJ11883.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida S16]
Length = 773
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 274 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 321
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 322 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 379
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 316
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 380 GMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 411
>gi|325274863|ref|ZP_08140878.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. TJI-51]
gi|324100011|gb|EGB97842.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. TJI-51]
Length = 746
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMKRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
>gi|431801220|ref|YP_007228123.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida HB3267]
gi|430791985|gb|AGA72180.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida HB3267]
Length = 746
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 316
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 GMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 384
>gi|395648544|ref|ZP_10436394.1| GTP pyrophosphokinase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 747
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P I+ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEIRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A++ R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IATLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R IT ++ + + D + +H+ S+
Sbjct: 236 RERFITDVMGQLRAELQATGVDADISGRAKHIYSI 270
>gi|121611280|ref|YP_999087.1| (p)ppGpp synthetase I SpoT/RelA [Verminephrobacter eiseniae EF01-2]
gi|121555920|gb|ABM60069.1| (p)ppGpp synthetase I, SpoT/RelA [Verminephrobacter eiseniae
EF01-2]
Length = 736
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 87/128 (67%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 248 ISASVQGRPKHIYSIVRKMRGKALNFDQVFDIRALRVVV---------PTVKDCYAALSW 298
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH+ + PI+ EFDDYI PKP+GYQSLHT V+ +G +E+Q+RTQ MH +AEHG+AAHW
Sbjct: 299 VHQQFKPIEQEFDDYIARPKPNGYQSLHTVVRDDNGKPIEIQLRTQAMHRHAEHGMAAHW 358
Query: 297 LYKETGNK 304
+YKE G+K
Sbjct: 359 VYKEAGSK 366
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+ +E+L ++ LA+RLG+W +K ELEDLC L+P +++++
Sbjct: 177 LVRESLQVFAPLANRLGIWQMKWELEDLCLRFLEPDVYKQV 217
>gi|270160131|ref|ZP_06188787.1| stringent stress response protein RelA [Legionella longbeachae
D-4968]
gi|289165092|ref|YP_003455230.1| GTP pyrophosphokinase [Legionella longbeachae NSW150]
gi|269988470|gb|EEZ94725.1| stringent stress response protein RelA [Legionella longbeachae
D-4968]
gi|288858265|emb|CBJ12133.1| GTP pyrophosphokinase [Legionella longbeachae NSW150]
Length = 734
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 84/121 (69%), Gaps = 9/121 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K ++SI+ KM RK+V + ++YDA A+RV+V K P CY +L +VH LW
Sbjct: 257 RSKHIHSIYKKMTRKNVSLDEIYDATAVRVLVDTK------PQ---CYEVLGMVHTLWKQ 307
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
I EFDDYI+NPK +GYQSLHTAVQGP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 ISAEFDDYIINPKANGYQSLHTAVQGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGGG 367
Query: 304 K 304
K
Sbjct: 368 K 368
>gi|312795968|ref|YP_004028890.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(Diphosphate)
3'-pyrophosphohydrolase [Burkholderia rhizoxinica HKI
454]
gi|312167743|emb|CBW74746.1| GTP pyrophosphokinase (EC 2.7.6.5) /
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
(EC 3.1.7.2) [Burkholderia rhizoxinica HKI 454]
Length = 741
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KMR K + ++ D RA RV+V P ++ CY++L I
Sbjct: 238 IDAEVSGRPKHIYSIWRKMRGKKLEFSELNDVRAFRVIV---------PDVKDCYTVLGI 288
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH +W P+ EFDDYI PKP+GY+SLHT V G DG A EVQIRT MH +AE+G+AAHW
Sbjct: 289 VHNIWQPVPREFDDYISRPKPNGYKSLHTVVIGDDGRAFEVQIRTHDMHRFAEYGIAAHW 348
Query: 297 LYKETGNK 304
YKE G +
Sbjct: 349 RYKEAGTR 356
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
PPA+ + +ETL I+ LA+RLG+W LK ELEDL F +P ++++
Sbjct: 163 PPAE---LPRETLEIYAPLANRLGIWQLKWELEDLAFRFEEPATYKRI 207
>gi|304310589|ref|YP_003810187.1| GTP pyrophosphokinase [gamma proteobacterium HdN1]
gi|301796322|emb|CBL44530.1| GTP pyrophosphokinase [gamma proteobacterium HdN1]
Length = 755
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM+RK + ++VYD RA+RV+V P I+ CY+ L
Sbjct: 257 GIEAEVKGRAKHIYSIWRKMKRKSIDFYQVYDVRAVRVLV---------PEIRDCYAALG 307
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I H LW I EFDDYI PK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 308 IAHNLWQHIPREFDDYIATPKENGYRSLHTAVLGPEGKVLEVQIRTFSMHEEAELGVCAH 367
Query: 296 WLYKETGNK 304
W YKE N+
Sbjct: 368 WRYKEGNNQ 376
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P AK + VA+E I+ LA RLG+ +K ELEDL F LQP + ++
Sbjct: 180 PDAKRQRVAREVFDIYAPLAHRLGIGHIKWELEDLAFRYLQPDAYMRI 227
>gi|451936564|ref|YP_007460418.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777487|gb|AGF48462.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 279
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ RLK +YSI++KMR K++ K+YD A+R+VV D I+ CY +LD
Sbjct: 155 GIKSEINGRLKHIYSIWNKMRIKNIDFAKLYDLSAVRIVVDD---------IKTCYIVLD 205
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H+LW I EFDDYI PK +GYQSLHT V D +E+QIRT MH +AEHGLAAH
Sbjct: 206 IIHKLWNHIPEEFDDYISKPKANGYQSLHTVVIDKDNYLIEIQIRTYNMHNFAEHGLAAH 265
Query: 296 WLYKETGN 303
W YK+ N
Sbjct: 266 WYYKKFRN 273
>gi|421155567|ref|ZP_15615043.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 14886]
gi|404520448|gb|EKA31121.1| GTP pyrophosphokinase [Pseudomonas aeruginosa ATCC 14886]
Length = 747
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKASS 377
>gi|381158677|ref|ZP_09867910.1| (p)ppGpp synthetase, RelA/SpoT family [Thiorhodovibrio sp. 970]
gi|380880035|gb|EIC22126.1| (p)ppGpp synthetase, RelA/SpoT family [Thiorhodovibrio sp. 970]
Length = 750
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK V I +++D RALRV+V D I CY+ L
Sbjct: 249 GIEAQISGRPKHIYSIWRKMQRKRVDIEQIFDLRALRVIVAD---------IPACYAALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI PK + Y+SLHTAV GP+ LEVQIRTQ+MHE+AE G+AAH
Sbjct: 300 VVHGLWKHIPREFDDYIATPKGNLYRSLHTAVIGPEDKPLEVQIRTQEMHEHAELGVAAH 359
Query: 296 WLYKETGN 303
W YKE
Sbjct: 360 WAYKEAAG 367
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
L PA+ A+A++T ++ LA+RLG+W +K ELEDL P+ ++++ + L
Sbjct: 171 LEPARQTALAEDTERVYAPLANRLGVWQIKWELEDLALRYRHPKDYKRVASAL 223
>gi|26988388|ref|NP_743813.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida KT2440]
gi|24983142|gb|AAN67277.1|AE016354_4 GTP pyrophosphokinase [Pseudomonas putida KT2440]
Length = 746
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 93/145 (64%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
>gi|337279372|ref|YP_004618844.1| GTP pyrophosphokinase [Ramlibacter tataouinensis TTB310]
gi|334730449|gb|AEG92825.1| candidate GTP pyrophosphokinase (GTP pyrophosphokinase)
[Ramlibacter tataouinensis TTB310]
Length = 733
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 162 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 221
+LE EL ++ G+ + R K +YSI KMR K + V+D RALRV+V
Sbjct: 239 SLEAELRVN-----GIPAQVHGRPKHIYSIVKKMRGKSLDFEHVFDVRALRVIV------ 287
Query: 222 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 281
P ++ CY+ L VH + PI EFDDYI PKP+GYQSLHT V+ G +E+Q+RT
Sbjct: 288 ---PEVRDCYAALAWVHERFEPIASEFDDYIARPKPNGYQSLHTVVRDEAGRPIEIQVRT 344
Query: 282 QKMHEYAEHGLAAHWLYKETGNK-LQSISSMDESD 315
Q MHE+AEHG+AAHW YKE G K +S+ E D
Sbjct: 345 QAMHEHAEHGVAAHWAYKEAGAKGYAGVSASSEYD 379
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R+VA+E L ++ LA+RLG+W LK E+EDL F L+P ++++
Sbjct: 176 RSVAREALQVFAPLANRLGIWQLKWEMEDLAFRFLEPATYKQV 218
>gi|395444967|ref|YP_006385220.1| ppGpp synthetase I SpoT/RelA [Pseudomonas putida ND6]
gi|397696412|ref|YP_006534295.1| GTP pyrophosphokinase [Pseudomonas putida DOT-T1E]
gi|388558964|gb|AFK68105.1| ppGpp synthetase I SpoT/RelA [Pseudomonas putida ND6]
gi|397333142|gb|AFO49501.1| GTP pyrophosphokinase [Pseudomonas putida DOT-T1E]
Length = 741
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 242 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 289
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 290 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 347
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 348 GMHEEAELGVCAHWRYKGTDVKPSS 372
>gi|320449341|ref|YP_004201437.1| GTP pyrophosphokinase [Thermus scotoductus SA-01]
gi|320149510|gb|ADW20888.1| GTP pyrophosphokinase [Thermus scotoductus SA-01]
Length = 667
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 7/154 (4%)
Query: 151 IALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARA 210
I ++VA EEAL ++ L+ + G+EVT R K LYSI+ KM R+ + ++YD A
Sbjct: 218 IIRKAMVALEEALRRDELLQAQ-LQGLEVT--GRPKHLYSIWKKMEREGKALEQIYDLLA 274
Query: 211 LRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 266
+RV++ K T G A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT
Sbjct: 275 VRVILDPKPAPTEEGRALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTT 334
Query: 267 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
V +G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 335 VIALEGLPLEVQIRTREMHRIAEYGIAAHWLYKE 368
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K R +AQETL I+ LA RLG+ LK ELEDL F L P+ + + + + R
Sbjct: 156 MPPEKQRRIAQETLEIYAPLAHRLGMGQLKWELEDLSFRYLHPEAYHALLSRIQETQEAR 215
Query: 69 NRV 71
++
Sbjct: 216 EQI 218
>gi|386013472|ref|YP_005931749.1| GTP pyrophosphokinase [Pseudomonas putida BIRD-1]
gi|313500178|gb|ADR61544.1| GTP pyrophosphokinase [Pseudomonas putida BIRD-1]
Length = 741
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 242 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 289
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 290 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 347
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 348 GMHEEAELGVCAHWRYKGTDVKPSS 372
>gi|372489431|ref|YP_005028996.1| RelA/SpoT family (p)ppGpp synthetase [Dechlorosoma suillum PS]
gi|359355984|gb|AEV27155.1| (p)ppGpp synthetase, RelA/SpoT family [Dechlorosoma suillum PS]
Length = 740
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 92/133 (69%), Gaps = 10/133 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K +YSI++KMR+K V +VYD RALRV+V + ++ CY++L IVH +
Sbjct: 256 IYGRPKHIYSIWNKMRKKGVDFSEVYDIRALRVIVDE---------VKDCYTVLGIVHNI 306
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI NPK + Y+SLHTAV+ PDG +LEVQIRT +MH +AE G+AAHW YKE
Sbjct: 307 WTPIPKEFDDYISNPKGNNYRSLHTAVRCPDGRSLEVQIRTWEMHRHAELGVAAHWRYKE 366
Query: 301 TGNKLQSISSMDE 313
G K S + D+
Sbjct: 367 -GTKHSSEDNYDD 378
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 7 YALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
YA P R VA+ETL ++ LA+RLG+W LK ELEDL F + P ++K+
Sbjct: 169 YAAEPDDLRVHVARETLELYSPLANRLGVWELKWELEDLSFRFIHPDTYKKI 220
>gi|422658161|ref|ZP_16720597.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331016788|gb|EGH96844.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 599
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
>gi|430761273|ref|YP_007217130.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430010897|gb|AGA33649.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 724
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + + ++ D RA RV+V D + CY++L
Sbjct: 234 GIQARVYGRPKHIYSIWRKMQKKQLALEELTDLRATRVIVDD---------LSACYTVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ MHE+AE G+AAH
Sbjct: 285 IVHNQWPHLPREFDDYIANPKDNGYQSLHTAVVGPEGKVVEVQIRTRAMHEFAELGVAAH 344
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 333
W YKE G + +++ S L D DD N L+
Sbjct: 345 WRYKEGGREDLALARAINS---LRQLLESDGDDQNLLE 379
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+AQETL + LA+RLG+ +LK E+EDL +L+P+ +R + L + + R R Y
Sbjct: 164 LAQETLDVIAPLANRLGIGSLKWEMEDLSLRILEPEAYRAIANGLDA--NRRAREAYVET 221
Query: 77 ITTIVSS 83
T + S
Sbjct: 222 FTRTLES 228
>gi|148549268|ref|YP_001269370.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida F1]
gi|421522586|ref|ZP_15969227.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida LS46]
gi|148513326|gb|ABQ80186.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida F1]
gi|402753686|gb|EJX14179.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida LS46]
Length = 746
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
>gi|422667889|ref|ZP_16727749.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330980190|gb|EGH78361.1| RelA/SpoT protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 386
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|167032269|ref|YP_001667500.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida GB-1]
gi|166858757|gb|ABY97164.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida GB-1]
Length = 746
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P I+ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEIRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
>gi|410663229|ref|YP_006915600.1| GTP pyrophosphokinase [Simiduia agarivorans SA1 = DSM 21679]
gi|409025586|gb|AFU97870.1| GTP pyrophosphokinase [Simiduia agarivorans SA1 = DSM 21679]
Length = 748
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 101/153 (66%), Gaps = 15/153 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L EL +++I G ++ R K +YSI+ KMRRK++G +VYD RA+R++V
Sbjct: 248 EVLRGEL--KSAHIEG---EITGRAKHIYSIWRKMRRKNIGFSQVYDIRAVRILV----- 297
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
P+++ CY++L IVH LW I EFDDYI +PK +GY+SLHTAV GP+ LEVQIR
Sbjct: 298 ----PSVRDCYAVLGIVHSLWRNIPNEFDDYIASPKENGYRSLHTAVIGPEQKVLEVQIR 353
Query: 281 TQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 313
T MH+ AE G+ AHW YK T +K +S + D+
Sbjct: 354 THGMHQDAEFGVCAHWRYKGT-DKEESQNGYDQ 385
>gi|77460438|ref|YP_349945.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas fluorescens Pf0-1]
gi|398979244|ref|ZP_10688299.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM25]
gi|77384441|gb|ABA75954.1| GTP pyrophosphokinase [Pseudomonas fluorescens Pf0-1]
gi|398135907|gb|EJM25009.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM25]
Length = 747
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|289677067|ref|ZP_06497957.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. syringae FF5]
Length = 402
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|374702789|ref|ZP_09709659.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. S9]
Length = 748
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIEADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PQMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTAAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|451812326|ref|YP_007448780.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778228|gb|AGF49176.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 330
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 92/147 (62%), Gaps = 11/147 (7%)
Query: 157 VACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG 216
+ E L K I Y G++ +S RLK +YSI++KM K++ ++YD ALRVVV
Sbjct: 187 IFIESTLSKIKSILNRY--GIKAEISGRLKHIYSIWNKMCFKNIDFSRLYDLSALRVVVD 244
Query: 217 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALE 276
D ++ CY +LDIVH+LW I EFDDYI PKP+GYQSLHT V D +E
Sbjct: 245 D---------VKTCYMVLDIVHKLWDHIPEEFDDYISRPKPNGYQSLHTVVIDKDNYLIE 295
Query: 277 VQIRTQKMHEYAEHGLAAHWLYKETGN 303
+QIRT MH +AE+GLA+HW YK+ N
Sbjct: 296 IQIRTCDMHNFAEYGLASHWFYKKFRN 322
>gi|378952324|ref|YP_005209812.1| RelA protein [Pseudomonas fluorescens F113]
gi|359762338|gb|AEV64417.1| RelA [Pseudomonas fluorescens F113]
Length = 748
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
>gi|329894308|ref|ZP_08270178.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [gamma
proteobacterium IMCC3088]
gi|328923104|gb|EGG30427.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [gamma
proteobacterium IMCC3088]
Length = 739
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 87/121 (71%), Gaps = 9/121 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K ++SI+ KM+RK +G +V+D RA+R++V P+++ CY+ L ++H L
Sbjct: 260 INGRAKHIFSIWKKMQRKGIGFSQVHDVRAIRILV---------PSVKDCYTTLGVIHGL 310
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W I EFDDYI NPKP+GY+SLHTAV GP+G LEVQ+RT +MH+ AE G+ AHW YK+
Sbjct: 311 WRTIPNEFDDYIANPKPNGYRSLHTAVIGPEGKVLEVQVRTNEMHDEAELGVCAHWRYKQ 370
Query: 301 T 301
+
Sbjct: 371 S 371
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+A E ++ LA RLG+ LK ELEDL F QP +++++ L R+R Y RR
Sbjct: 185 LAAEVSGLYVPLAHRLGIGQLKWELEDLAFRYTQPSVYKRIAKLLDGKRVERDR--YIRR 242
Query: 77 ITTIVSS 83
++ V +
Sbjct: 243 VSQTVDA 249
>gi|302132005|ref|ZP_07257995.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 747
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
>gi|423094042|ref|ZP_17081838.1| GTP pyrophosphokinase [Pseudomonas fluorescens Q2-87]
gi|397885448|gb|EJL01931.1| GTP pyrophosphokinase [Pseudomonas fluorescens Q2-87]
Length = 748
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVEADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
>gi|213971907|ref|ZP_03400007.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato T1]
gi|301384477|ref|ZP_07232895.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato Max13]
gi|213923332|gb|EEB56927.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato T1]
Length = 747
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSSSNHYEEKI 384
>gi|302059737|ref|ZP_07251278.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato K40]
Length = 661
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 169 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 219
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 220 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 279
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 280 WRYK--GTDVKSSSNHYEEKI 298
>gi|104780553|ref|YP_607051.1| GTP pyrophosphokinase RelA [Pseudomonas entomophila L48]
gi|95109540|emb|CAK14241.1| putative GTP pyrophosphokinase RelA [Pseudomonas entomophila L48]
Length = 746
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 353 SMHEEAELGVCAHWRYKGTDVKPSS 377
>gi|422616769|ref|ZP_16685474.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. japonica str.
M301072]
gi|330897095|gb|EGH28573.1| RelA/SpoT protein, partial [Pseudomonas syringae pv. japonica str.
M301072]
Length = 611
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|28868900|ref|NP_791519.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
gi|28852139|gb|AAO55214.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
Length = 744
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 252 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 303 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 362
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 363 WRYK--GTDVKSSSNHYEEKI 381
>gi|291612747|ref|YP_003522904.1| RelA/SpoT family protein [Sideroxydans lithotrophicus ES-1]
gi|291582859|gb|ADE10517.1| RelA/SpoT family protein [Sideroxydans lithotrophicus ES-1]
Length = 659
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 12/138 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI +KM+RK++ ++YD RA+R++V I+ CY+ L
Sbjct: 254 GIKAEVTGRPKHIYSIINKMKRKNLDFDQLYDVRAVRILVD---------TIEQCYAALS 304
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI EFDDYI PKP+GY+SLHTAV GP +EVQIRTQ+MH +E G+AAH
Sbjct: 305 IVHELWTPIQKEFDDYIARPKPNGYKSLHTAVLGPRDLPVEVQIRTQQMHHDSELGVAAH 364
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE +S S +DE
Sbjct: 365 WRYKENR---KSESGLDE 379
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
PP + + +AQET I+ LA+RLG+W +K ELEDL L+P +++K +A + R
Sbjct: 177 PPEQQKLIAQETQSIFAPLANRLGVWQIKWELEDLSTRYLEPGLYKK----IAKLLDER- 231
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLE-AVVPFDILSDRR 124
R+ R I I+S + A T +H+ S+ + ++ + FD L D R
Sbjct: 232 RIDRERYIADIISHLQRELAQAGIKAEVTGRPKHIYSIINKMKRKNLDFDQLYDVR 287
>gi|146306766|ref|YP_001187231.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina ymp]
gi|421506221|ref|ZP_15953146.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina DLHK]
gi|145574967|gb|ABP84499.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas mendocina ymp]
gi|400343003|gb|EJO91388.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas mendocina DLHK]
Length = 747
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTTLG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|330504040|ref|YP_004380909.1| (p)ppGpp synthetase I [Pseudomonas mendocina NK-01]
gi|328918326|gb|AEB59157.1| (p)ppGpp synthetase I [Pseudomonas mendocina NK-01]
Length = 747
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLV---------PEVRDCYTTLG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|429212426|ref|ZP_19203591.1| GTP pyrophosphokinase [Pseudomonas sp. M1]
gi|428156908|gb|EKX03456.1| GTP pyrophosphokinase [Pseudomonas sp. M1]
Length = 752
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 256 GIKADLSGRAKHIYSIWRKMQRKGLDFSQIYDVRAVRVLV---------PEMRDCYTALG 306
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 307 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 366
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 367 WRYK--GTDVKSGSNHYEEKI 385
>gi|443642861|ref|ZP_21126711.1| Bifunctional (p)ppGpp synthetase I / (p)ppGpp pyrophosphohydrolase
[Pseudomonas syringae pv. syringae B64]
gi|443282878|gb|ELS41883.1| Bifunctional (p)ppGpp synthetase I / (p)ppGpp pyrophosphohydrolase
[Pseudomonas syringae pv. syringae B64]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|424068834|ref|ZP_17806283.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073260|ref|ZP_17810678.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996341|gb|EKG36818.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407996350|gb|EKG36826.1| GTP pyrophospho kinase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|422637401|ref|ZP_16700833.1| RelA/SpoT protein [Pseudomonas syringae Cit 7]
gi|330949797|gb|EGH50057.1| RelA/SpoT protein [Pseudomonas syringae Cit 7]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|239815569|ref|YP_002944479.1| (p)ppGpp synthetase I SpoT/RelA [Variovorax paradoxus S110]
gi|239802146|gb|ACS19213.1| (p)ppGpp synthetase I, SpoT/RelA [Variovorax paradoxus S110]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 94/146 (64%), Gaps = 18/146 (12%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
LE+EL G+ T+ R K++YSI KMR K + +V+D ALRVVV
Sbjct: 247 LERELQAE-----GVRATVQGRPKNIYSIVKKMRGKSLDFAQVFDILALRVVV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQ 278
P ++ CY+ L VH ++PID EFDDYI PKP+GYQSLHT V+ G G +E+Q
Sbjct: 295 --PDVKDCYAALAWVHSHFLPIDEEFDDYIARPKPNGYQSLHTVVREMVDGKPGKPIEIQ 352
Query: 279 IRTQKMHEYAEHGLAAHWLYKETGNK 304
IRT++MH++AEHG+AAHW YKE G+K
Sbjct: 353 IRTEEMHDHAEHGVAAHWAYKEAGHK 378
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 55
+VA+E+L ++ LA+RLG+W +K E+EDL F L+P+ ++
Sbjct: 184 SVARESLQVFAPLANRLGIWQVKWEIEDLSFRFLEPETYK 223
>gi|440745105|ref|ZP_20924402.1| RelA/SpoT protein [Pseudomonas syringae BRIP39023]
gi|440373090|gb|ELQ09862.1| RelA/SpoT protein [Pseudomonas syringae BRIP39023]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|66046924|ref|YP_236765.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae B728a]
gi|63257631|gb|AAY38727.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae B728a]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|344941876|ref|ZP_08781164.1| RelA/SpoT family protein [Methylobacter tundripaludum SV96]
gi|344263068|gb|EGW23339.1| RelA/SpoT family protein [Methylobacter tundripaludum SV96]
Length = 710
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 112/206 (54%), Gaps = 20/206 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KMRRK + I ++YD A+RV+V + + CY+ L
Sbjct: 227 GISAEIYGRPKHIYSIWKKMRRKQLDIDELYDLLAVRVIVDN---------LTACYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI NPK +GYQSLHT + P+G+ +EVQIRTQ+MH++AE G+AAH
Sbjct: 278 MVHSLWQTIPKEFDDYIANPKENGYQSLHTVIIDPEGNRIEVQIRTQQMHDFAELGVAAH 337
Query: 296 WLYKETGNKLQSISS--------MDESDIEASSSLSKDTDDHNPLDTDLFQK--YSSLKM 345
W YKE G +I +DE+ E S D ++LF Y
Sbjct: 338 WSYKEGGKHDAAIEKNIASLRKLLDETSPERSRKEGSDEALSENFRSELFNDRVYVLTPA 397
Query: 346 GHPVIRVEGSNLL-AAVIIRVEKGGR 370
G + V+GS L A I E G R
Sbjct: 398 GKLIDLVKGSTPLDFAYAIHTEVGHR 423
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
R +AQETL I+ +A+R+G+ LK ELED+ F L+PQ +R++ L
Sbjct: 155 RFIAQETLDIYAPIANRMGIHQLKWELEDMAFRYLKPQSYRRIAKSLT 202
>gi|237798966|ref|ZP_04587427.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|237806202|ref|ZP_04592906.1| GTP pyrophosphokinase, partial [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021820|gb|EGI01877.1| GTP pyrophosphokinase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331027315|gb|EGI07370.1| GTP pyrophosphokinase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 533
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|440722555|ref|ZP_20902933.1| RelA/SpoT protein [Pseudomonas syringae BRIP34876]
gi|440729399|ref|ZP_20909579.1| RelA/SpoT protein [Pseudomonas syringae BRIP34881]
gi|440358722|gb|ELP96062.1| RelA/SpoT protein [Pseudomonas syringae BRIP34881]
gi|440361143|gb|ELP98385.1| RelA/SpoT protein [Pseudomonas syringae BRIP34876]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|71733843|ref|YP_275858.1| GTP pyrophosphokinase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71554396|gb|AAZ33607.1| GTP pyrophosphokinase [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 744
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 252 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 303 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 362
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 363 WRYKGTDVK 371
>gi|298157515|gb|EFH98596.1| GTP pyrophosphokinase / Guanosine-3',5'-bis(diphosphate)
3'-pyrophosphohydrolase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 747
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|402698898|ref|ZP_10846877.1| GTP pyrophosphokinase [Pseudomonas fragi A22]
Length = 750
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P K VA+E I+ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 178 PDEKRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|429332116|ref|ZP_19212848.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida CSV86]
gi|428763166|gb|EKX85349.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida CSV86]
Length = 746
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 316
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
>gi|289628370|ref|ZP_06461324.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289648124|ref|ZP_06479467.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422581197|ref|ZP_16656340.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330866047|gb|EGH00756.1| GTP pyrophosphokinase [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 747
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|422590107|ref|ZP_16664765.1| GTP pyrophosphokinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422653534|ref|ZP_16716298.1| GTP pyrophosphokinase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330877091|gb|EGH11240.1| GTP pyrophosphokinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330966581|gb|EGH66841.1| GTP pyrophosphokinase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 747
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|381401703|ref|ZP_09926596.1| GTP pyrophosphokinase [Kingella kingae PYKK081]
gi|380833262|gb|EIC13137.1| GTP pyrophosphokinase [Kingella kingae PYKK081]
Length = 725
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY+ L
Sbjct: 241 GIQCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------SVSECYTTLG 291
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 292 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 351
Query: 296 WLYKETG 302
W YKE G
Sbjct: 352 WRYKEGG 358
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+ RA+A+ETL I+ LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 167 QKRALAKETLDIFAPLANRLGVWQLKWQLEDLGFRHYNPEEYKRI 211
>gi|257485907|ref|ZP_05639948.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|416017928|ref|ZP_11564965.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. B076]
gi|416028609|ref|ZP_11571554.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422404211|ref|ZP_16481265.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|422596420|ref|ZP_16670702.1| GTP pyrophosphokinase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422605745|ref|ZP_16677758.1| GTP pyrophosphokinase [Pseudomonas syringae pv. mori str. 301020]
gi|422684161|ref|ZP_16742412.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|320323401|gb|EFW79489.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. B076]
gi|320327598|gb|EFW83610.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330876402|gb|EGH10551.1| GTP pyrophosphokinase [Pseudomonas syringae pv. glycinea str. race
4]
gi|330889400|gb|EGH22061.1| GTP pyrophosphokinase [Pseudomonas syringae pv. mori str. 301020]
gi|330986719|gb|EGH84822.1| GTP pyrophosphokinase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331013486|gb|EGH93542.1| GTP pyrophosphokinase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 747
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|423692851|ref|ZP_17667371.1| GTP diphosphokinase [Pseudomonas fluorescens SS101]
gi|387998684|gb|EIK60013.1| GTP diphosphokinase [Pseudomonas fluorescens SS101]
Length = 747
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
>gi|409427770|ref|ZP_11262262.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas sp. HYS]
Length = 746
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 97/154 (62%), Gaps = 16/154 (10%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 316
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSSSNHYEEKI 384
>gi|422297689|ref|ZP_16385319.1| GTP pyrophospho kinase [Pseudomonas avellanae BPIC 631]
gi|407990823|gb|EKG32828.1| GTP pyrophospho kinase [Pseudomonas avellanae BPIC 631]
Length = 711
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 219 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 269
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 270 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 329
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 330 WRYK--GTDVKSGSNHYEEKI 348
>gi|350561728|ref|ZP_08930566.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780760|gb|EGZ35078.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 724
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + + ++ D RA RV+V D + CY++L
Sbjct: 234 GVQARVYGRPKHIYSIWRKMQKKQLALEELTDLRATRVIVDD---------LSACYTVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ MHE+AE G+AAH
Sbjct: 285 IVHNQWPHLPREFDDYIANPKDNGYQSLHTAVIGPEGKVVEVQIRTRAMHEFAELGVAAH 344
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 333
W YKE G + +++ S L D DD N L+
Sbjct: 345 WRYKEGGREDLALARAINS---LRQLLESDGDDQNLLE 379
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ +AQETL + LA+RLG+ +LK E+EDL +L+P +R +
Sbjct: 160 NAKLLAQETLDVIAPLANRLGIGSLKWEMEDLSLRILEPDAYRAI 204
>gi|312962345|ref|ZP_07776836.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudomonas
fluorescens WH6]
gi|311283272|gb|EFQ61862.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudomonas
fluorescens WH6]
Length = 762
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 270 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 320
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 321 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 380
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 381 WRYKGTDVKAGS 392
>gi|387894956|ref|YP_006325253.1| GTP pyrophosphokinase [Pseudomonas fluorescens A506]
gi|388467232|ref|ZP_10141442.1| GTP diphosphokinase [Pseudomonas synxantha BG33R]
gi|387163946|gb|AFJ59145.1| GTP pyrophosphokinase [Pseudomonas fluorescens A506]
gi|388010812|gb|EIK71999.1| GTP diphosphokinase [Pseudomonas synxantha BG33R]
Length = 747
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLAFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQS 307
W YK T K S
Sbjct: 366 WRYKGTDVKAGS 377
>gi|170720403|ref|YP_001748091.1| (p)ppGpp synthetase I SpoT/RelA [Pseudomonas putida W619]
gi|169758406|gb|ACA71722.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudomonas putida W619]
Length = 746
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
>gi|388543450|ref|ZP_10146741.1| RelA protein [Pseudomonas sp. M47T1]
gi|388278762|gb|EIK98333.1| RelA protein [Pseudomonas sp. M47T1]
Length = 748
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 16/154 (10%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 316
MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 353 AMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
>gi|333374620|ref|ZP_08466460.1| GTP diphosphokinase [Kingella kingae ATCC 23330]
gi|332975258|gb|EGK12158.1| GTP diphosphokinase [Kingella kingae ATCC 23330]
Length = 725
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY+ L
Sbjct: 241 GIQCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------SVSECYTTLG 291
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 292 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 351
Query: 296 WLYKETG 302
W YKE G
Sbjct: 352 WRYKEGG 358
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+ R +A+ETL I+ LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 167 QKRVLAKETLDIFAPLANRLGVWQLKWQLEDLGFRHYNPEEYKRI 211
>gi|260655712|ref|ZP_05861185.1| GTP diphosphokinase [Jonquetella anthropi E3_33 E1]
gi|260629629|gb|EEX47823.1| GTP diphosphokinase [Jonquetella anthropi E3_33 E1]
Length = 762
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K YSI+ KM RK + I ++YD ALRV+V D + CYS+L
Sbjct: 272 GIKNSIKGRAKHFYSIYEKMNRKKLSIDQLYDLLALRVIVED---------VAQCYSVLG 322
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 323 VVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVLGPSGEPLEVQIRTWAMHWRAEYGVAAH 382
Query: 296 WLYKETGNKLQSISS 310
W YKE + + + S
Sbjct: 383 WRYKEGDSHVDDLDS 397
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
A+ETL I+ LA RLG++ +K LEDL F P+++ ++++ + R V
Sbjct: 203 AKETLEIYAPLAHRLGIYQMKRTLEDLAFKYYDPEMYYEIKSKVKKRLPEREAV 256
>gi|398845089|ref|ZP_10602135.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM84]
gi|398253944|gb|EJN39055.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM84]
Length = 746
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 14/145 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L+ ELL + G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V
Sbjct: 247 LQNELLAT-----GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV------- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT
Sbjct: 295 --PEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTH 352
Query: 283 KMHEYAEHGLAAHWLYKETGNKLQS 307
MHE AE G+ AHW YK T K S
Sbjct: 353 GMHEEAELGVCAHWRYKGTDVKPSS 377
>gi|424845459|ref|ZP_18270070.1| (p)ppGpp synthetase, RelA/SpoT family [Jonquetella anthropi DSM
22815]
gi|363986897|gb|EHM13727.1| (p)ppGpp synthetase, RelA/SpoT family [Jonquetella anthropi DSM
22815]
Length = 762
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K YSI+ KM RK + I ++YD ALRV+V D + CYS+L
Sbjct: 272 GIKNSIKGRAKHFYSIYEKMNRKKLSIDQLYDLLALRVIVED---------VAQCYSVLG 322
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 323 VVHTIWKPIPGQFDDYIANPKNNMYQSLHTTVLGPSGEPLEVQIRTWAMHWRAEYGVAAH 382
Query: 296 WLYKETGNKLQSISS 310
W YKE + + + S
Sbjct: 383 WRYKEGDSHVDDLDS 397
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
A+ETL I+ LA RLG++ +K LEDL F P+++ ++++ + R V
Sbjct: 203 AKETLEIYAPLAHRLGIYQMKRTLEDLAFKYYDPEMYYEIKSKVKKRLPEREAV 256
>gi|152980252|ref|YP_001353176.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille]
gi|151280329|gb|ABR88739.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille]
Length = 759
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 87/138 (63%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K ++SI+SK+R K + +YD RA RV+V D ++ CY++L
Sbjct: 255 GIKAEVFGRPKHIFSIWSKLRGKAIEFSDLYDVRAFRVIVDD---------VKTCYTVLG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H +W PI EFDDYI PK +GYQSLHT V DG LEVQ+RT MH++AE+G+AAH
Sbjct: 306 IIHNIWAPIPEEFDDYISRPKSNGYQSLHTIVIAEDGRPLEVQVRTNDMHDFAEYGVAAH 365
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE G S DE
Sbjct: 366 WRYKEAGGSNFSGQKYDE 383
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
+++ A+ET ++ LA+RLG+W LK ELEDL F LQP+ ++++ + L
Sbjct: 181 RSKQYARETFDLYAPLANRLGVWQLKWELEDLSFRFLQPEAYKRIASQL 229
>gi|357418302|ref|YP_004931322.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pseudoxanthomonas spadix BD-a59]
gi|355335880|gb|AER57281.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Pseudoxanthomonas spadix BD-a59]
Length = 712
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 83/123 (67%), Gaps = 9/123 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM+RK V + +++D RA+R+ V D + CY+ L +VH L
Sbjct: 232 VSGRPKHIYSIWKKMQRKQVALDELFDLRAVRITVSD---------VAQCYAALGVVHAL 282
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI PK +GY+SLHTAV GP G ALEVQIRT +MH AE G+AAHW YKE
Sbjct: 283 WTPIPSEFDDYIARPKANGYRSLHTAVVGPQGRALEVQIRTYEMHAQAELGVAAHWRYKE 342
Query: 301 TGN 303
G
Sbjct: 343 GGG 345
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
ALP + RA+A T I LA+RLG+W LK ELEDL F LQP +R + A L
Sbjct: 148 ALPEDQRRALALLTRDIHAPLANRLGIWQLKWELEDLAFRYLQPDTYRAIAAQLDD---- 203
Query: 68 RNRVGYSRRITTIVSS 83
NR G R I + ++
Sbjct: 204 -NRAGRERYIEKVKAT 218
>gi|302185507|ref|ZP_07262180.1| RelA/SpoT protein [Pseudomonas syringae pv. syringae 642]
Length = 599
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 107 GVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 157
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 158 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 217
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 218 WRYK--GTDVKSGSNHYEEKI 236
>gi|351729669|ref|ZP_08947360.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax radicis N35]
Length = 737
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PTVKDCYAALSW 299
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDHGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSATGEYD 379
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E+L ++ LA+RLG+W +K ELEDL F L+P ++++
Sbjct: 177 SLARESLQVFAPLANRLGIWQVKWELEDLSFRFLEPDTYKEV 218
>gi|398850507|ref|ZP_10607212.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM80]
gi|398248721|gb|EJN34123.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM80]
Length = 747
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|289208234|ref|YP_003460300.1| (p)ppGpp synthetase I SpoT/RelA [Thioalkalivibrio sp. K90mix]
gi|288943865|gb|ADC71564.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalivibrio sp. K90mix]
Length = 733
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 101/163 (61%), Gaps = 21/163 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM+RK + ++YD RA RV+V + + CY++L
Sbjct: 237 GIQARVFGRPKHIYSIWKKMQRKQTSLDELYDLRATRVIVDE---------LATCYTVLG 287
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W + EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT++M ++AE G+AAH
Sbjct: 288 IVHNDWRHLPSEFDDYIANPKDNGYQSLHTAVVGPEGKVVEVQIRTREMDDFAELGVAAH 347
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSK-----DTDDHNPLD 333
W YKE G + Q+++ A SSL + D D N LD
Sbjct: 348 WRYKEGGREDQALN-------RAISSLRQLLEAADNSDQNLLD 383
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P AR +AQETL + LA+RLG+ LK E+EDL +L+P+ +R++
Sbjct: 160 PDDGARVLAQETLDVIAPLANRLGVGQLKWEMEDLALRILEPETYREI 207
>gi|89900856|ref|YP_523327.1| (p)ppGpp synthetase I SpoT/RelA [Rhodoferax ferrireducens T118]
gi|89345593|gb|ABD69796.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Rhodoferax ferrireducens T118]
Length = 751
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 83/129 (64%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
GM VT+ R K ++SI KMR K + +V+D RALR+VV D I CY+ L
Sbjct: 259 GMSVTVQGRPKHIFSIVKKMRGKSLAFDQVHDIRALRIVVAD---------IADCYAALS 309
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + PI EFDDYI PK +GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAH
Sbjct: 310 WVHSQFTPIAEEFDDYIAKPKANGYQSLHTVVRDAAGLPIEIQIRTQAMHDHAEHGVAAH 369
Query: 296 WLYKETGNK 304
W YKE G K
Sbjct: 370 WAYKEAGVK 378
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+E L ++ LA+RLG+W +K E+EDL F L+P ++R++
Sbjct: 189 VAREALQVFAPLANRLGIWEIKWEMEDLAFRFLEPDVYRQV 229
>gi|398970197|ref|ZP_10683249.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM30]
gi|398140908|gb|EJM29854.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM30]
Length = 747
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|424924370|ref|ZP_18347731.1| (p)ppGpp synthetase [Pseudomonas fluorescens R124]
gi|404305530|gb|EJZ59492.1| (p)ppGpp synthetase [Pseudomonas fluorescens R124]
Length = 747
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|398991852|ref|ZP_10694940.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM24]
gi|399015483|ref|ZP_10717753.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM16]
gi|398108446|gb|EJL98407.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM16]
gi|398136809|gb|EJM25888.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM24]
Length = 747
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|359779979|ref|ZP_09283206.1| GTP pyrophosphokinase [Pseudomonas psychrotolerans L19]
gi|359372595|gb|EHK73159.1| GTP pyrophosphokinase [Pseudomonas psychrotolerans L19]
Length = 746
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIKSDISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPREFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSASNHYEEKI 384
>gi|418532189|ref|ZP_13098098.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni ATCC
11996]
gi|371450984|gb|EHN64027.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni ATCC
11996]
Length = 743
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E L ++ LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 184 SIAREALYVFAPLANRLGIWQIKWELEDLAFRFLEPDTYRQI 225
>gi|365093453|ref|ZP_09330518.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. NO-1]
gi|363414333|gb|EHL21483.1| (p)ppGpp synthetase I SpoT/RelA [Acidovorax sp. NO-1]
Length = 737
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +V+D RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVFDIRALRVVV---------PNVKDCYAALSW 299
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFKPIVEEFDDYIAKPKPNGYQSLHTIVRDDHGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSAAGEYD 379
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 3 FEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
F + LP A + +A+E+L ++ LA+RLG+W +K ELEDL F L+P ++++
Sbjct: 166 FHAASKLPVAPS--LARESLQVFAPLANRLGIWQVKWELEDLSFRFLEPDTYKEV 218
>gi|398879075|ref|ZP_10634177.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM67]
gi|398884173|ref|ZP_10639114.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM60]
gi|398195242|gb|EJM82292.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM60]
gi|398197436|gb|EJM84415.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM67]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I +++ ++ + D + +H+ S+
Sbjct: 236 RERFIADVMNQLKVELQATGVDADISGRAKHIYSI 270
>gi|264678112|ref|YP_003278019.1| (p)ppGpp synthetase I SpoT/RelA [Comamonas testosteroni CNB-2]
gi|299533684|ref|ZP_07047058.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni S44]
gi|262208625|gb|ACY32723.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni CNB-2]
gi|298718406|gb|EFI59389.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni S44]
Length = 743
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E L ++ LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 184 SIAREALYVFAPLANRLGIWQIKWELEDLAFRFLEPDTYRQI 225
>gi|398889275|ref|ZP_10643151.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM55]
gi|398189719|gb|EJM76986.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM55]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I+ ++S + + D + +H+ S+
Sbjct: 236 RERFISDVMSQLKNELQATGVDADISGRAKHIYSI 270
>gi|119897979|ref|YP_933192.1| GTP diphosphokinase [Azoarcus sp. BH72]
gi|119670392|emb|CAL94305.1| GTP diphosphokinase [Azoarcus sp. BH72]
Length = 733
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI++KMR K + +VYD RALRV+V + ++ CY++L
Sbjct: 246 GIKAEIQGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVDE---------VKDCYTVLG 296
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH++W PI+ EFDDYI PK + YQSLHTAV DG ALEVQIRT MH +AE G+AAH
Sbjct: 297 LVHQIWQPINKEFDDYITKPKGNNYQSLHTAVLAGDGRALEVQIRTHDMHRHAELGVAAH 356
Query: 296 WLYKE 300
W YKE
Sbjct: 357 WRYKE 361
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+E+L I+ LA+RLG+W LK ELEDL F L+P ++++
Sbjct: 176 IARESLDIYAPLANRLGVWQLKWELEDLSFRFLEPDTYKRI 216
>gi|221067473|ref|ZP_03543578.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni KF-1]
gi|220712496|gb|EED67864.1| (p)ppGpp synthetase I, SpoT/RelA [Comamonas testosteroni KF-1]
Length = 743
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +++D RA+RV+V P ++ CY+ L
Sbjct: 256 ISASVQGRPKHIYSIVKKMRGKSLSFDQLFDIRAMRVIV---------PTVKDCYAALSW 306
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + P++ EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 307 VHEQFTPLEKEFDDYIAKPKPNGYQSLHTVVRDETGRTIEIQIRTQAMHDHAEHGVAAHW 366
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G K +S+ E D
Sbjct: 367 AYKEAGTKGYAGVSASSEYD 386
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E L ++ LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 184 SIAREALYVFAPLANRLGIWQIKWELEDLAFRFLEPDTYRQI 225
>gi|398867522|ref|ZP_10622978.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM78]
gi|398236591|gb|EJN22368.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM78]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I+ ++S + + D + +H+ S+
Sbjct: 236 RERFISDVMSQLKNELQATGVDADISGRAKHIYSI 270
>gi|399001092|ref|ZP_10703811.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM18]
gi|398128549|gb|EJM17936.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM18]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 100/165 (60%), Gaps = 19/165 (11%)
Query: 160 EEALEKELLISTS--------YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
E L++E IS + G++ +S R K +YSI+ KM+RK + ++YD RA+
Sbjct: 231 ERRLDRERFISDVMTQLKNELHATGVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAV 290
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RV+V P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+
Sbjct: 291 RVLV---------PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPE 341
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 316
G LEVQIRT MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 342 GKVLEVQIRTHAMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
>gi|398861459|ref|ZP_10617088.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM79]
gi|398233120|gb|EJN19064.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM79]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
>gi|398914094|ref|ZP_10656796.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM49]
gi|398179113|gb|EJM66734.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM49]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I+ ++S + + D + +H+ S+
Sbjct: 236 RERFISDVMSQLKNELQATGVDADISGRAKHIYSI 270
>gi|398929740|ref|ZP_10664144.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM48]
gi|398952956|ref|ZP_10675074.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM33]
gi|398154366|gb|EJM42839.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM33]
gi|398166469|gb|EJM54564.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM48]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I+ ++S + + D + +H+ S+
Sbjct: 236 RERFISDVMSQLKNELQATGVDADISGRAKHIYSI 270
>gi|389682225|ref|ZP_10173568.1| GTP diphosphokinase [Pseudomonas chlororaphis O6]
gi|388554099|gb|EIM17349.1| GTP diphosphokinase [Pseudomonas chlororaphis O6]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|398998667|ref|ZP_10701435.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM21]
gi|398119732|gb|EJM09413.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM21]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 100/165 (60%), Gaps = 19/165 (11%)
Query: 160 EEALEKELLISTS--------YIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
E L++E IS + G++ +S R K +YSI+ KM+RK + ++YD RA+
Sbjct: 231 ERRLDRERFISDVMTQLKNELHATGVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAV 290
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RV+V P ++ CY+ L IVH LW I EFDDYI NPK +GY+SLHTAV GP+
Sbjct: 291 RVLV---------PEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPE 341
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDI 316
G LEVQIRT MHE AE G+ AHW YK G ++S S+ E I
Sbjct: 342 GKVLEVQIRTHAMHEEAELGVCAHWRYK--GTDVKSGSNHYEEKI 384
>gi|398839672|ref|ZP_10596917.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM102]
gi|398112302|gb|EJM02165.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM102]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
>gi|37958841|gb|AAP51105.1| putative pyrophosphokinase [uncultured bacterium]
Length = 865
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 89/141 (63%), Gaps = 10/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K LYSI+ KM+ K++ I +V+D RALRV+V D I CY+ L
Sbjct: 360 GLNAQVQGRPKHLYSIWKKMQGKNLSIDRVFDVRALRVIVDD---------IPSCYAALS 410
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
H LW P+ EF DYI PKP+GYQSLHT V G D +E+QIR+Q MHE+A+ G+AAH
Sbjct: 411 RAHELWRPMPDEFSDYIARPKPNGYQSLHTVVLGDDDKPIEIQIRSQAMHEHADSGVAAH 470
Query: 296 WLYKETGNK-LQSISSMDESD 315
W YKE G K + ++ ES+
Sbjct: 471 WAYKEAGAKGYAGVQTVGESE 491
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+A+E++ ++ LASRLG+ +K E+EDL F L P+ + +
Sbjct: 288 KALARESMQVFAPLASRLGIGQIKWEMEDLSFRFLMPEAYHSI 330
>gi|426411003|ref|YP_007031102.1| GTP diphosphokinase [Pseudomonas sp. UW4]
gi|426269220|gb|AFY21297.1| GTP diphosphokinase [Pseudomonas sp. UW4]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I+ ++S + + D + +H+ S+
Sbjct: 236 RERFISDVMSQLKNELQATGVDADISGRAKHIYSI 270
>gi|398873055|ref|ZP_10628321.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM74]
gi|398200671|gb|EJM87580.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM74]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I+ ++S + + D + +H+ S+
Sbjct: 236 RERFISDVMSQLKNELQATGVDADISGRAKHIYSI 270
>gi|398904229|ref|ZP_10652153.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM50]
gi|398176171|gb|EJM63901.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM50]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
>gi|398938103|ref|ZP_10667592.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM41(2012)]
gi|398166296|gb|EJM54397.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM41(2012)]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
>gi|399008255|ref|ZP_10710732.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM17]
gi|425900909|ref|ZP_18877500.1| GTP diphosphokinase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397883302|gb|EJK99788.1| GTP diphosphokinase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398117184|gb|EJM06937.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas sp. GM17]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P+ +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I+ +++ + R D + +H+ S+
Sbjct: 236 RERFISDVMNQLQNELRATGVDADISGRAKHIYSI 270
>gi|407363204|ref|ZP_11109736.1| (p)ppGpp synthetase SpoT/RelA [Pseudomonas mandelii JR-1]
Length = 747
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVDADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WRYK--GTDVKSGSNHYEEKI 384
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K VA+E I+ LA RLG+ +K ELEDL F L+P +++ +A + R R+
Sbjct: 181 KRNRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPDQYKQ----IAKLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
R I +++ ++ + D + +H+ S+
Sbjct: 236 RERFIADVMNQLKVELQATGVDADISGRAKHIYSI 270
>gi|241763707|ref|ZP_04761756.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax delafieldii 2AN]
gi|241367096|gb|EER61470.1| (p)ppGpp synthetase I, SpoT/RelA [Acidovorax delafieldii 2AN]
Length = 737
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +V D RALRVVV P+++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVLDIRALRVVV---------PSVKDCYAALSW 299
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + PI EFDDYI PKP+GYQSLHT V+ G +E+QIRTQ MH++AEHG+AAHW
Sbjct: 300 VHEQFTPIVEEFDDYIARPKPNGYQSLHTIVRDAAGKPIEIQIRTQAMHDHAEHGVAAHW 359
Query: 297 LYKETGNK-LQSISSMDESD 315
YKE G+K +S+ E D
Sbjct: 360 AYKEAGSKGYAGVSATGEYD 379
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E+L ++ LA+RLG+W +K ELEDL F L+P ++++
Sbjct: 177 SLARESLQVFAPLANRLGIWQVKWELEDLSFRFLEPDTYKEV 218
>gi|392552203|ref|ZP_10299340.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
spongiae UST010723-006]
Length = 728
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 13/158 (8%)
Query: 143 AKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI 202
AK++ D IA S ++ AL K L + G+E + R K +YSI+ KM+ K+
Sbjct: 213 AKLLDDKRIARESYMSNMVALVKAKLAES----GIEAEVYGRPKHIYSIYKKMQNKNYEF 268
Query: 203 HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQS 262
+++D RA+RVVV + +Q CY+ L IVH W ++ EFDDYI PK +GYQS
Sbjct: 269 DQLFDIRAMRVVVNE---------LQDCYAALGIVHTNWRHLNKEFDDYIATPKANGYQS 319
Query: 263 LHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+HT V GP+G +E+QIRTQ MH+ AE G+AAHWLYKE
Sbjct: 320 IHTVVFGPEGKTVEIQIRTQAMHQDAELGVAAHWLYKE 357
>gi|94502135|ref|ZP_01308636.1| GTP pyrophosphokinase [Bermanella marisrubri]
gi|94425737|gb|EAT10744.1| GTP pyrophosphokinase [Oceanobacter sp. RED65]
Length = 747
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 101/169 (59%), Gaps = 15/169 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM RK++ +VYD RA+R++V P ++ CY+ L
Sbjct: 255 GIECDVQGRAKHIYSIWRKMNRKNIDFGQVYDIRAVRILV---------PEVKDCYAALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I H W I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 ITHTFWKHIPHEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTFDMHEDAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLK 344
WLYK T +SS D E S L + + H+ L DL + SL+
Sbjct: 366 WLYKGT-----DVSSKDNGYEEKISWLRQVLEWHDEL-GDLGELMGSLR 408
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + VA+E ++ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 178 PEERRMKVAREVFDVYAPLAHRLGIGHIKWELEDLSFRYLEPEAYKQI 225
>gi|145589013|ref|YP_001155610.1| (p)ppGpp synthetase I SpoT/RelA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047419|gb|ABP34046.1| (p)ppGpp synthetase I, SpoT/RelA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 676
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 12/132 (9%)
Query: 169 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 228
I T+ I G + R K +YSI+ KM+ K + +YD RA RV+V D ++
Sbjct: 205 IKTARIDG---EVLGRPKHIYSIWKKMQGKSLDFANLYDVRAFRVLVED---------VK 252
Query: 229 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 288
CY++L IVH +W P+ EFDDYI PKP+GYQSLHT V DG+A E+QIRT +MH+ A
Sbjct: 253 TCYAVLGIVHNIWQPVPREFDDYIARPKPNGYQSLHTVVMNEDGAAFEIQIRTHEMHQQA 312
Query: 289 EHGLAAHWLYKE 300
E+GLAAHW YKE
Sbjct: 313 EYGLAAHWRYKE 324
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 77
AQE L I SLA+RLG+W +K E+EDL F L P+ +R ++A+M + R+ I
Sbjct: 140 AQEILNIDASLANRLGIWQMKWEMEDLAFRALSPETYR----EIANMLDAK-RIERQAFI 194
Query: 78 TTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
IV + +TA D +H+ S+ K + + F L D R + D+
Sbjct: 195 ERIVVQLQEEIKTARIDGEVLGRPKHIYSIWKKMQGKSLDFANLYDVRAFRVLVEDV 251
>gi|422647052|ref|ZP_16710183.1| RelA/SpoT protein [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330960597|gb|EGH60857.1| RelA/SpoT protein [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 747
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM+RK + ++YD RALRV+V P ++ CY+ L
Sbjct: 255 GVTADIGGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNK 304
W YK T K
Sbjct: 366 WRYKGTDVK 374
>gi|319793992|ref|YP_004155632.1| (p)ppGpp synthetase I SpoT/RelA [Variovorax paradoxus EPS]
gi|315596455|gb|ADU37521.1| (p)ppGpp synthetase I, SpoT/RelA [Variovorax paradoxus EPS]
Length = 746
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 93/146 (63%), Gaps = 18/146 (12%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
LE+EL G+ T+ R K++YSI KMR K + +V+D ALRVVV D
Sbjct: 245 LERELQAE-----GVHATVQGRPKNIYSIVKKMRGKSLDFAQVFDILALRVVVAD----- 294
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQ 278
++ CY+ L VH + PID EFDDYI PKP+GYQSLHT V+ G G +E+Q
Sbjct: 295 ----VKDCYAALAWVHTHFQPIDEEFDDYIARPKPNGYQSLHTVVRELVDGKPGKPIEIQ 350
Query: 279 IRTQKMHEYAEHGLAAHWLYKETGNK 304
IRT++MH++AEHG+AAHW YKE G+K
Sbjct: 351 IRTEEMHDHAEHGVAAHWAYKEAGHK 376
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 31/40 (77%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 55
+VA+E+L ++ LA+RLG+W +K E+EDL F ++P+ ++
Sbjct: 182 SVARESLQVFAPLANRLGIWQVKWEIEDLSFRFIEPETYK 221
>gi|398811748|ref|ZP_10570537.1| (p)ppGpp synthetase, RelA/SpoT family [Variovorax sp. CF313]
gi|398079838|gb|EJL70676.1| (p)ppGpp synthetase, RelA/SpoT family [Variovorax sp. CF313]
Length = 734
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 13/133 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ T+ R K++YSI KMR K + +V+D ALRVVV P ++ CY+ L
Sbjct: 241 GVKATVQGRPKNIYSIVKKMRGKSLDFEQVFDILALRVVV---------PDVKDCYAALA 291
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ----GPDGSALEVQIRTQKMHEYAEHG 291
VH + PID EFDDYI PKP+GYQSLHT V+ G G +E+QIRT++MH++AEHG
Sbjct: 292 WVHSHFQPIDEEFDDYIARPKPNGYQSLHTVVRELVDGKAGKPIEIQIRTEEMHDHAEHG 351
Query: 292 LAAHWLYKETGNK 304
+AAHW YKE G+K
Sbjct: 352 VAAHWAYKEAGHK 364
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 55
+VA+E+L ++ LA+RLG+W +K E+EDL F L+P+ ++
Sbjct: 170 SVARESLQVFAPLANRLGIWQVKWEIEDLSFRFLEPETYK 209
>gi|70731792|ref|YP_261534.1| GTP diphosphokinase [Pseudomonas protegens Pf-5]
gi|68346091|gb|AAY93697.1| GTP diphosphokinase [Pseudomonas protegens Pf-5]
Length = 747
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVNADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
>gi|388258655|ref|ZP_10135830.1| GTP pyrophosphokinase [Cellvibrio sp. BR]
gi|387937414|gb|EIK43970.1| GTP pyrophosphokinase [Cellvibrio sp. BR]
Length = 748
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 98/150 (65%), Gaps = 11/150 (7%)
Query: 157 VACEEALEK--ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
+A +E ++K E L S G+E ++ R K +YSI+ KM+RK + +VYD RA+R++
Sbjct: 238 LARQEYIDKLLERLRSELKKAGIEGSVGGRAKHIYSIWRKMQRKGIPFSQVYDIRAVRIL 297
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V P ++ CY++L IVH LW I EFDDYI +PK +GY+SLHTAV GP+
Sbjct: 298 V---------PTVRDCYAVLGIVHSLWRNIPHEFDDYIASPKENGYRSLHTAVWGPENKV 348
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
LE+QIRTQ+MHE +E G+ AHW YK T K
Sbjct: 349 LEIQIRTQEMHEESELGVCAHWRYKGTDTK 378
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+ R VA+E I+ LA RLG+ +K ELEDL F LQP+ ++++
Sbjct: 185 RRRQVAREVADIYAPLAHRLGIGHIKWELEDLSFRYLQPEDYKRI 229
>gi|419953524|ref|ZP_14469668.1| GTP pyrophosphokinase [Pseudomonas stutzeri TS44]
gi|387969584|gb|EIK53865.1| GTP pyrophosphokinase [Pseudomonas stutzeri TS44]
Length = 747
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRTQ MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTQAMHEEAELGVCAH 365
Query: 296 WLYKET 301
W YK T
Sbjct: 366 WRYKGT 371
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|429742735|ref|ZP_19276350.1| putative GTP diphosphokinase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429167767|gb|EKY09653.1| putative GTP diphosphokinase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 736
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KM +K +G +YD RA+R++V + CY+ L
Sbjct: 252 GIRYDVAGRPKHIYSIYKKMVKKKLGFDGLYDIRAVRILVD---------TVPECYTTLG 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI GEFDDYI NPK +GYQSLHT + GP+ +EVQIRT +MH + E G+AAH
Sbjct: 303 IVHSLWQPIPGEFDDYIANPKGNGYQSLHTVIVGPEDKGVEVQIRTFEMHRFNEFGVAAH 362
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 363 WRYKEGGK 370
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+A+ETL I+ LA+RLG+W LK +LEDL F P+ +R++
Sbjct: 180 RALAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQNPEKYREI 222
>gi|121998519|ref|YP_001003306.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1]
gi|121589924|gb|ABM62504.1| metal dependent phosphohydrolase [Halorhodospira halophila SL1]
Length = 736
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM+RK + +YD RA+R++V D+ + CY+ L
Sbjct: 249 GLKAEVYGRPKHIYSIYRKMQRKGLRFDDLYDLRAVRILVDDE---------RTCYAALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI EFDDYI PK + Y+SLHTAV GP+G A+EVQIRT +MH AE G+AAH
Sbjct: 300 IVHGLWTPIPREFDDYIATPKENNYRSLHTAVAGPEGKAVEVQIRTHEMHAEAELGIAAH 359
Query: 296 WLYKETGNK 304
W YKE G +
Sbjct: 360 WRYKEGGKQ 368
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
+A+ET I+ LA+RLG+W LK ELEDL F L+P+ + DLA + R R
Sbjct: 179 LARETRDIYAPLANRLGIWQLKWELEDLAFRHLEPEAY----MDLAKRLAERRR 228
>gi|404380117|ref|ZP_10985157.1| RelA/SpoT family protein [Simonsiella muelleri ATCC 29453]
gi|404294423|gb|EFG30276.2| RelA/SpoT family protein [Simonsiella muelleri ATCC 29453]
Length = 731
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KM +K + +YD RA+RV+V I CY+ L
Sbjct: 247 GIVCDVAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRVLVN---------TIAECYTTLG 297
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MHE+ E G+AAH
Sbjct: 298 IVHSLWQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTHEMHEFNEFGVAAH 357
Query: 296 WLYKETG 302
W YKE G
Sbjct: 358 WRYKEGG 364
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R+VA+ETL I+ LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 175 RSVAKETLDIFAPLANRLGVWQLKWQLEDLGFRYQNPEEYKRI 217
>gi|409398264|ref|ZP_11249078.1| GTP pyrophosphokinase [Pseudomonas sp. Chol1]
gi|409117194|gb|EKM93629.1| GTP pyrophosphokinase [Pseudomonas sp. Chol1]
Length = 747
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRTQ MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTQAMHEEAELGVCAH 365
Query: 296 WLYKET 301
W YK T
Sbjct: 366 WRYKGT 371
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|88797955|ref|ZP_01113542.1| GTP pyrophosphokinase [Reinekea blandensis MED297]
gi|88779152|gb|EAR10340.1| GTP pyrophosphokinase [Reinekea sp. MED297]
Length = 744
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K +YSI+ KM+RK++ +VYD RA R++V P ++ CY++L
Sbjct: 254 NVQAEIQGRAKHIYSIWRKMKRKNITFSQVYDIRAFRILV---------PEVRDCYTVLG 304
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W I EFDDYI +PK +GY+SLHTAV GP+G +E+QIRTQ+MH+ AE G+ AH
Sbjct: 305 IVHSMWRHIPREFDDYIASPKQNGYRSLHTAVIGPEGKVVEIQIRTQEMHDDAELGVCAH 364
Query: 296 WLYKETGNK 304
WLYK T K
Sbjct: 365 WLYKGTDAK 373
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR- 68
P A+ VA+E I+ LA RLG+ LK ELEDL F ++PQ ++K +A + +
Sbjct: 177 PAARRYRVAREVFDIYAPLAHRLGVGHLKWELEDLAFRYIEPQDYKK----IAKLLDEKR 232
Query: 69 -NRVGYSRRITTIVS 82
+R Y +++ T+++
Sbjct: 233 LDRQEYIQKVQTLIT 247
>gi|389871811|ref|YP_006379230.1| GTP pyrophosphokinase [Advenella kashmirensis WT001]
gi|388537060|gb|AFK62248.1| GTP pyrophosphokinase [Advenella kashmirensis WT001]
Length = 764
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 9/144 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI++KMR K + ++YD A+R++V ++ CY+ L
Sbjct: 235 GIEADVSGRAKHIYSIYNKMRNKRLTFDQLYDLLAIRIIVANERD---------CYATLS 285
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++ W P+ EFDDYI PKP+GY+SLHT ++ DG E QIRT+KMH++AE+G+AAH
Sbjct: 286 LLQARWTPVMNEFDDYIARPKPNGYRSLHTVLKTADGHTFEAQIRTRKMHDFAEYGMAAH 345
Query: 296 WLYKETGNKLQSISSMDESDIEAS 319
W YKE G K ++++ D + S
Sbjct: 346 WRYKEAGPKGGQVAAVSMYDRQVS 369
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+ET ++ SLA+RLG+W +K E+EDL F L P+I++ +
Sbjct: 165 LAEETRDVYASLANRLGIWQIKWEMEDLSFRFLSPEIYKDI 205
>gi|388567354|ref|ZP_10153788.1| (p)ppGpp synthetase I SpoT/RelA [Hydrogenophaga sp. PBC]
gi|388265376|gb|EIK90932.1| (p)ppGpp synthetase I SpoT/RelA [Hydrogenophaga sp. PBC]
Length = 761
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 88/144 (61%), Gaps = 14/144 (9%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E L++ LL G+ + R K +YSI KMR K + +V+D RALRV+V +
Sbjct: 263 EDLQRALLAQ-----GIAAMVQGRPKHIYSIVKKMRGKALDFEQVFDIRALRVIVLETAD 317
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
CY++L VH + P+ EFDDYI PKP+GYQSLHT V+ G A E+QIR
Sbjct: 318 ---------CYAVLSFVHEHFTPVADEFDDYIAKPKPNGYQSLHTVVRDAQGRAFEIQIR 368
Query: 281 TQKMHEYAEHGLAAHWLYKETGNK 304
TQ MH++AEHG+AAHW YKE G K
Sbjct: 369 TQAMHDHAEHGVAAHWAYKEAGAK 392
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 55
+A E+L ++ LA+RLG+W +K E+EDL F L+PQ ++
Sbjct: 203 LASESLHVFAPLANRLGIWQIKWEMEDLAFRFLEPQTYK 241
>gi|451823182|ref|YP_007459456.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451775982|gb|AGF47023.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 734
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 96/150 (64%), Gaps = 19/150 (12%)
Query: 164 EKELLISTSYI---------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
E+EL IS YI G++ +S R K +YSI++KM+ KD+ + D A+RV+
Sbjct: 230 ERELFIS-KYIKDISYALIRAGIKGEVSGRPKHIYSIWNKMQTKDMDFFSLSDLSAVRVI 288
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D I+ CY +L ++H +W PI EF+DYI PK +GYQSLHT V+ +GS
Sbjct: 289 VND---------IKNCYEVLGVIHEIWEPITEEFNDYISCPKTNGYQSLHTVVRESNGSL 339
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
LE+QIRT +MH++AEHGLAAHW YKE+ +
Sbjct: 340 LEIQIRTYEMHQFAEHGLAAHWFYKESSHN 369
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+ AQET+ ++ LA+RLG+W +K E+EDL F +L ++K+
Sbjct: 178 KEFAQETIDLYSPLANRLGVWQIKWEIEDLSFRILYSNEYKKI 220
>gi|292491389|ref|YP_003526828.1| RelA/SpoT family protein [Nitrosococcus halophilus Nc4]
gi|291579984|gb|ADE14441.1| RelA/SpoT family protein [Nitrosococcus halophilus Nc4]
Length = 712
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K LYSI+ KMR K++ H+++D A RV+V D + CY+ L
Sbjct: 224 GLRGEVSGRPKHLYSIWKKMRNKNLDFHQLFDVHAFRVIVDD---------VSACYATLS 274
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW PI EFDDYI NPKP+GY+SLHTAV GP +E+QIR+ +MH +E G+A+H
Sbjct: 275 LVHTLWTPIPEEFDDYIANPKPNGYRSLHTAVLGPGKKPMEIQIRSFQMHGESELGVASH 334
Query: 296 WLYKE 300
W YKE
Sbjct: 335 WRYKE 339
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A + + QETL I+ LA+RLG+W LK ELEDL L+P+ ++++
Sbjct: 149 ATRQTLGQETLDIFAPLANRLGIWQLKWELEDLALRYLEPETYQQL 194
>gi|289523398|ref|ZP_06440252.1| GTP diphosphokinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503090|gb|EFD24254.1| GTP diphosphokinase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 764
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K YSI+ KM+RK++ I ++YD ALRV+ ++ CY +L
Sbjct: 278 GIRAFITGRAKHFYSIYEKMKRKNLTIEQMYDLLALRVITN---------SVVDCYQVLG 328
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI G+FDDYI NPK + YQSLHT V GP G LEVQIRT MH AE+G+AAH
Sbjct: 329 IVHTIWKPIPGQFDDYIANPKSNMYQSLHTTVVGPSGEPLEVQIRTWDMHWIAEYGIAAH 388
Query: 296 WLYKE 300
W YKE
Sbjct: 389 WRYKE 393
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+A+ETL I+ LA RLG++ +K ELEDL F VL+P ++ ++R
Sbjct: 208 IARETLEIYAPLAHRLGIYHMKRELEDLAFKVLEPDMYYEIR 249
>gi|380513565|ref|ZP_09856972.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas sacchari NCPPB 4393]
Length = 718
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 93/151 (61%), Gaps = 11/151 (7%)
Query: 155 SLVACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 212
S VA E +E K++L G+ +S R K +YSI+ KM++K + ++YD RA+R
Sbjct: 209 SRVARERYIEAVKKILSKALAEQGLRAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVR 268
Query: 213 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 272
V+V D + CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 269 VMVDD---------VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEG 319
Query: 273 SALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+EVQIRT MH AE G+AAHW YKE G
Sbjct: 320 RTIEVQIRTHDMHAQAELGVAAHWKYKEGGK 350
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P A+ RA+AQ T I LA+RLG+W LK ELEDL F L+P +R++ ++ R
Sbjct: 155 PEAQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPDTYRRIAREVDESRVARE 214
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTK 128
R Y + I+S ++ ++ + +H+ S+ + + + + FD L D R
Sbjct: 215 R--YIEAVKKILSKALAEQGLRAE---ISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVRV 269
Query: 129 FLHDLA 134
+ D+A
Sbjct: 270 MVDDVA 275
>gi|330811209|ref|YP_004355671.1| GTP diphosphokinase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423698765|ref|ZP_17673255.1| GTP diphosphokinase [Pseudomonas fluorescens Q8r1-96]
gi|327379317|gb|AEA70667.1| GTP diphosphokinase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|387996645|gb|EIK57975.1| GTP diphosphokinase [Pseudomonas fluorescens Q8r1-96]
Length = 748
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM+RK + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GVVADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLV---------PEMRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YK G ++S S+ E I
Sbjct: 366 WKYK--GTDVKSGSNHYEEKI 384
>gi|56479168|ref|YP_160757.1| GTP pyrophosphokinase [Aromatoleum aromaticum EbN1]
gi|56315211|emb|CAI09856.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Aromatoleum aromaticum EbN1]
Length = 733
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 87/125 (69%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI++KMR K + +VYD RALRV+VG+ ++ CY++L
Sbjct: 246 GIKAEVYGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVGN---------VRDCYTVLG 296
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IV+++W PI EFDDYI PK + YQSLHTAV DG A+EVQIRT MH++AE G+AAH
Sbjct: 297 IVNQIWQPIGQEFDDYITKPKGNNYQSLHTAVLAGDGRAVEVQIRTHDMHKHAELGVAAH 356
Query: 296 WLYKE 300
W YKE
Sbjct: 357 WRYKE 361
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+E+L I+ LA+RLG+W LK ELEDL F L+P+ ++++
Sbjct: 176 VARESLDIYAPLANRLGVWQLKWELEDLSFRFLEPETYKRI 216
>gi|285019015|ref|YP_003376726.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas albilineans GPE PC73]
gi|283474233|emb|CBA16734.1| putative guanosine polyphosphate pyrophosphohydrolase/synthetase
protein [Xanthomonas albilineans GPE PC73]
Length = 725
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 95/151 (62%), Gaps = 11/151 (7%)
Query: 155 SLVACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 212
S +A E +E K+ L + G+ +S R K +YSI+ KM++K + ++YD RA+R
Sbjct: 216 SRLARERYIEAVKKTLSKALAVQGLCAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVR 275
Query: 213 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 272
V+V D + CY+ L +VH LW+P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 276 VMVDD---------VAACYAALGVVHALWVPVPSEFDDYIARPKANDYRSLHTAVVGPEG 326
Query: 273 SALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+EVQIRT +MH AE G+AAHW YKE G
Sbjct: 327 RTIEVQIRTHEMHAQAELGVAAHWKYKEGGK 357
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W LK ELEDL F L+P +R++
Sbjct: 167 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRDLEPDTYRRI 209
>gi|389806042|ref|ZP_10203183.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter thiooxydans
LCS2]
gi|388446310|gb|EIM02351.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter thiooxydans
LCS2]
Length = 711
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 9/130 (6%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G++ L+ R K +YSI+ KM+RK + +YD RA+RV+V +I CY+
Sbjct: 221 VAGIQAELAGRPKHIYSIWKKMQRKSLDFSDLYDIRAVRVLVD---------SITDCYAA 271
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH LW + GEFDDYI PK +GYQSLHTAV GP+G LEVQIRT MH E G+A
Sbjct: 272 LGVVHALWPHLPGEFDDYIARPKANGYQSLHTAVIGPEGKTLEVQIRTHAMHRANELGVA 331
Query: 294 AHWLYKETGN 303
AHW YKE G+
Sbjct: 332 AHWRYKEGGS 341
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
ALP + +A+A+ T I LA+RLG+W LK ELEDL F LQP +R++
Sbjct: 144 ALPEDERQALARLTRDIHAPLANRLGIWQLKWELEDLAFRYLQPDTYRRI 193
>gi|384440422|ref|YP_005655146.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (PpGpp
synthase) [Thermus sp. CCB_US3_UF1]
gi|359291555|gb|AEV17072.1| Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (PpGpp
synthase) [Thermus sp. CCB_US3_UF1]
Length = 726
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 106/178 (59%), Gaps = 14/178 (7%)
Query: 155 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
++ EEAL K+ L+ + G EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 222 AMAILEEALRKDELLQAQ-LQGFEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 278
Query: 215 VGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 270
+ K T G A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 279 LDPKPAPTEEGQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 338
Query: 271 DGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 321
+G LEVQIRT++MH AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 339 EGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRISWLRSIQEWQQEFSSS 396
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K R +AQETL I+ LA RLG+ LK ELEDL F L P+ + + + + R
Sbjct: 156 MPPHKQRRIAQETLEIYAPLAHRLGIGQLKWELEDLSFRYLHPEAYHALLSRIQETQEAR 215
Query: 69 NRV 71
RV
Sbjct: 216 ERV 218
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 33/145 (22%)
Query: 471 FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLLRTMLRWEEQLRSE- 517
EG P++ + R VA + A + ++ LR++ W+++ S
Sbjct: 338 LEGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRISWLRSIQEWQQEFSSSR 397
Query: 518 ---ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKL 573
++ + LGG+ V V P G I+ L G+T D A + E G
Sbjct: 398 EFVEAVTRDLLGGR-------------VFVFTPKGRIINLPKGATPVDFAYHIHTEVGHH 444
Query: 574 VL---VNGQLVLPNTELKDGDIVEV 595
++ VNG++V + EL++G+IVE+
Sbjct: 445 MVGAKVNGRIVPLSYELQNGEIVEI 469
>gi|220935281|ref|YP_002514180.1| GTP diphosphokinase [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996591|gb|ACL73193.1| GTP diphosphokinase [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 770
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 112/178 (62%), Gaps = 15/178 (8%)
Query: 133 LAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIP-GMEVTLSSRLKSLYSI 191
+ + SE ++ A++++++ + + E +E+ + T+ P G+E + R K +YSI
Sbjct: 247 ILEPSEYRRVARLLEESRTERETYI--REFMER---LETALRPEGIEARVLGRPKHIYSI 301
Query: 192 FSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDY 251
+ KM RK + ++YD RA+RV+V D+ I CY++L +VH LW I EFDDY
Sbjct: 302 WRKMERKQLDFEELYDLRAVRVIV-DR--------IPTCYTVLGVVHGLWPHIPQEFDDY 352
Query: 252 IVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS 309
I NPK +GYQSLHTAV GP +EVQIRTQ M ++AE G+AAHW YKE G + Q++
Sbjct: 353 IANPKDNGYQSLHTAVIGPRAKVVEVQIRTQAMDDFAELGVAAHWRYKEGGREDQAMG 410
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P ARA A+ETL ++ LA RLG+ LK E+EDL F +L+P +R++
Sbjct: 209 PDDLARAYARETLEVFAPLAHRLGIGQLKWEMEDLSFRILEPSEYRRV 256
>gi|226941695|ref|YP_002796769.1| RelA [Laribacter hongkongensis HLHK9]
gi|226716622|gb|ACO75760.1| RelA [Laribacter hongkongensis HLHK9]
Length = 736
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KMR+K + ++YD RA+RV+V DK + CY++L
Sbjct: 253 GVRADVAGRAKHIYSIWKKMRKKHLDFSELYDIRAVRVLV-DK--------VSDCYAVLG 303
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW PI GEFDDYI +PK + Y+SLHTAV GP LEVQIRT MHE+AE G+AAH
Sbjct: 304 MVHSLWQPIPGEFDDYIAHPKANDYKSLHTAVIGPQDKVLEVQIRTFDMHEHAEFGVAAH 363
Query: 296 WLYKETG 302
W YKE G
Sbjct: 364 WRYKEGG 370
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A+ET I+ LA+RLG+W +K ELEDL F L+P ++K+
Sbjct: 181 RRIARETQEIFAPLANRLGVWQIKWELEDLAFRHLEPDNYKKI 223
>gi|375091649|ref|ZP_09737938.1| RelA/SpoT family protein [Helcococcus kunzii ATCC 51366]
gi|374563171|gb|EHR34493.1| RelA/SpoT family protein [Helcococcus kunzii ATCC 51366]
Length = 719
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 9/134 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ T++ R K +YSI++KM+++D I ++D A+RV+V D I CY++L I
Sbjct: 227 IKFTMTGRPKGIYSIYNKMKKQDTSIDNIFDLIAIRVIVKD---------INQCYAVLGI 277
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW PI G F DYI PKP+ YQSLHT V G G EVQIRT++MH+ AE G+A+HW
Sbjct: 278 VHNLWKPIPGRFKDYIAMPKPNFYQSLHTTVIGEKGQIFEVQIRTEEMHKNAEFGIASHW 337
Query: 297 LYKETGNKLQSISS 310
YKE K+ ++ +
Sbjct: 338 QYKEGKKKVSNLDN 351
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
K + A ETL I+ LA RLG+ ++K ELEDLC + P + + + S R ++
Sbjct: 152 KQISTANETLEIYVPLAHRLGINSIKWELEDLCLRYIDPISYYSVAQQIDQKRSEREKI 210
>gi|53804046|ref|YP_114354.1| GTP pyrophosphokinase [Methylococcus capsulatus str. Bath]
gi|53757807|gb|AAU92098.1| GTP pyrophosphokinase [Methylococcus capsulatus str. Bath]
Length = 718
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 97/157 (61%), Gaps = 17/157 (10%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K LYSI+ KM RK + +YD A+RV V +I CY++L
Sbjct: 237 GIDARVSGRPKHLYSIWKKMERKHAQLADLYDLLAVRVTVD---------SIPTCYTVLG 287
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW I EFDDYI NPK +GYQSLHT V GPD +E+QIRTQ MHE+AE+G+AAH
Sbjct: 288 AVHGLWPHIPKEFDDYIANPKDNGYQSLHTVVIGPDDRPVEIQIRTQAMHEFAEYGVAAH 347
Query: 296 WLYKETGNK-------LQSISSMDESDIEASSSLSKD 325
W YKE G + + S+ + ES+ E + SL +D
Sbjct: 348 WRYKEGGGQDAAFDRSIASLRRLLESE-EDNDSLLQD 383
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
++A+ETL ++ LA RLG+ LK ELEDL F L P +R + L + + R
Sbjct: 166 SIARETLELYAPLAHRLGVGQLKWELEDLSFRYLHPDEYRTLAKSLNTNRAER 218
>gi|254283985|ref|ZP_04958953.1| GTP pyrophosphokinase [gamma proteobacterium NOR51-B]
gi|219680188|gb|EED36537.1| GTP pyrophosphokinase [gamma proteobacterium NOR51-B]
Length = 737
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 84/124 (67%), Gaps = 9/124 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YSI+ KM+RK +G +VYD RALR++V + + CY L
Sbjct: 250 GVDYELSGRAKHIYSIWRKMQRKGIGFSQVYDIRALRILV---------DSTKDCYHTLG 300
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W I EFDDY+ +PK +GY+SLHTAV GP+G LEVQIRT +MHE AE G+ AH
Sbjct: 301 IVHSIWRNIPNEFDDYVASPKENGYRSLHTAVIGPEGKILEVQIRTHQMHEEAELGVCAH 360
Query: 296 WLYK 299
W YK
Sbjct: 361 WRYK 364
>gi|440733401|ref|ZP_20913141.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas translucens DAR61454]
gi|440362375|gb|ELP99574.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Xanthomonas translucens DAR61454]
Length = 718
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 93/151 (61%), Gaps = 11/151 (7%)
Query: 155 SLVACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALR 212
S VA E +E K++L G+ +S R K +YSI+ KM++K + ++YD RA+R
Sbjct: 209 SRVARERYIEAVKKILSKALSEQGLRAEISGRPKHIYSIWRKMQKKRLAFDQLYDLRAVR 268
Query: 213 VVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 272
V+V D + CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 269 VMVDD---------VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEG 319
Query: 273 SALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+EVQIRT MH AE G+AAHW YKE G
Sbjct: 320 RTIEVQIRTHDMHAQAELGVAAHWKYKEGGK 350
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP A+ RA+AQ T I LA+RLG+W LK ELEDL F L+P +R++ ++
Sbjct: 154 LPEAQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPDTYRRIAREVDE----- 208
Query: 69 NRVGYSRRITTI--VSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRK 125
+RV R I + + S L E+ + + +H+ S+ + + + + FD L D R
Sbjct: 209 SRVARERYIEAVKKILSKALSEQGLRAE--ISGRPKHIYSIWRKMQKKRLAFDQLYDLRA 266
Query: 126 RTKFLHDLA 134
+ D+A
Sbjct: 267 VRVMVDDVA 275
>gi|74317776|ref|YP_315516.1| GTP diphosphokinase, RelA/SpoT protein [Thiobacillus denitrificans
ATCC 25259]
gi|74057271|gb|AAZ97711.1| GTP diphosphokinase, RelA/SpoT protein [Thiobacillus denitrificans
ATCC 25259]
Length = 722
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 91/139 (65%), Gaps = 9/139 (6%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E L + + G+E ++ R K + SI +KMRRK + ++YD RA+RV+V +
Sbjct: 235 ERLKAELALHGIEAEVTGRPKHIASIVNKMRRKHLSFEQLYDIRAVRVLVRQEID----- 289
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
CY++L +VH LW PI GEFDDYI PK + Y+SLHTAV GP+ ALEVQIRT MH
Sbjct: 290 ----CYTVLGLVHNLWQPIPGEFDDYISQPKSNDYRSLHTAVIGPEDRALEVQIRTFDMH 345
Query: 286 EYAEHGLAAHWLYKETGNK 304
+AE G+AAHW YKE+G +
Sbjct: 346 RHAELGVAAHWRYKESGKQ 364
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A+ Q+ ++ LA+RLG+W +K E+ED F L+P+ +R + A L
Sbjct: 174 ALGQQARELFAPLANRLGVWQIKWEMEDWAFRYLEPETYRTIAAQL 219
>gi|344208530|ref|YP_004793671.1| RelA/SpoT family protein [Stenotrophomonas maltophilia JV3]
gi|343779892|gb|AEM52445.1| RelA/SpoT family protein [Stenotrophomonas maltophilia JV3]
Length = 718
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
K++L G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 220 KKVLSRELVAQGIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 272
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 273 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 330
Query: 285 HEYAEHGLAAHWLYKETGN 303
H AE G+AAHW YKE G
Sbjct: 331 HSQAELGVAAHWKYKEGGK 349
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R++ ++ R R Y
Sbjct: 159 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYRRIAREVDETRIARER--YV 216
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ ++S + + ++ + +H+ S+ + + + + FD L D R + D+
Sbjct: 217 ENVKKVLSRELVAQGIKAE---VSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDDV 273
Query: 134 A 134
A
Sbjct: 274 A 274
>gi|254522748|ref|ZP_05134803.1| RelA/SpoT family protein [Stenotrophomonas sp. SKA14]
gi|219720339|gb|EED38864.1| RelA/SpoT family protein [Stenotrophomonas sp. SKA14]
Length = 718
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
K++L G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 220 KKVLSRELVAQGIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 272
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 273 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 330
Query: 285 HEYAEHGLAAHWLYKETGN 303
H AE G+AAHW YKE G
Sbjct: 331 HSQAELGVAAHWKYKEGGK 349
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R++ ++ R R Y
Sbjct: 159 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYRRIAREVDETRIARER--YV 216
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ ++S + + ++ + +H+ S+ + + + + FD L D R + D+
Sbjct: 217 ENVKKVLSRELVAQGIKAE---VSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDDV 273
Query: 134 A 134
A
Sbjct: 274 A 274
>gi|334131928|ref|ZP_08505690.1| GTP pyrophosphokinase [Methyloversatilis universalis FAM5]
gi|333443401|gb|EGK71366.1| GTP pyrophosphokinase [Methyloversatilis universalis FAM5]
Length = 730
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 93/149 (62%), Gaps = 17/149 (11%)
Query: 160 EEALEKELLISTSYI--------PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
E+ +E+E I+ S G++ + R K +YSI++KMR K + +VYD RAL
Sbjct: 222 EKRVEREAFIAESMARLKAELQAAGIQADIQGRPKHIYSIWNKMRAKKLEFSEVYDVRAL 281
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RV+V +++ CY L +VH+LW P+ EFDDYI PK + YQSLHTAV PD
Sbjct: 282 RVLV---------ESVRDCYGALGVVHQLWHPLPREFDDYIAQPKGNNYQSLHTAVIAPD 332
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
G +LEVQIRT MH +AE G+AAHW YKE
Sbjct: 333 GRSLEVQIRTWDMHRHAEMGVAAHWRYKE 361
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+E+L I+ LA+RLG+W LK ELEDL F L+P ++++
Sbjct: 176 LARESLDIYAPLANRLGVWQLKWELEDLSFRFLEPDTYKRI 216
>gi|256822070|ref|YP_003146033.1| (p)ppGpp synthetase I SpoT/RelA [Kangiella koreensis DSM 16069]
gi|256795609|gb|ACV26265.1| (p)ppGpp synthetase I, SpoT/RelA [Kangiella koreensis DSM 16069]
Length = 736
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R+K +YSI+ KM RK VG ++YD RA+R++V +Q CY L IVH
Sbjct: 253 VSGRVKHIYSIWKKMTRKKVGFEEIYDVRAVRILV---------ERVQDCYGALGIVHGE 303
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W I EFDDY+ PK +GY+S+HTAV GP+G LE+QIRT +MHE +E G+AAHW YKE
Sbjct: 304 WQHIPKEFDDYVATPKENGYRSIHTAVVGPEGKILEIQIRTFQMHEESEKGIAAHWAYKE 363
Query: 301 TGN 303
N
Sbjct: 364 GAN 366
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
A+ET I+ LA+RLG+ LK ELEDL F L+P+ + + +L R R
Sbjct: 179 ARETKNIFAPLANRLGIGQLKWELEDLSFRYLEPEAYLSIAKNLKEKRVDRER 231
>gi|408822202|ref|ZP_11207092.1| RelA/SpoT family protein [Pseudomonas geniculata N1]
Length = 706
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
K++L G++ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 208 KKVLSRELVAQGIKAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 260
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 261 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 318
Query: 285 HEYAEHGLAAHWLYKETGN 303
H AE G+AAHW YKE G
Sbjct: 319 HSQAELGVAAHWKYKEGGK 337
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R++ ++ R R Y
Sbjct: 147 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYRRIAREVDETRIARER--YV 204
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ ++S + + ++ + +H+ S+ + + + + FD L D R + D+
Sbjct: 205 ENVKKVLSRELVAQGIKAE---VSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDDV 261
Query: 134 A 134
A
Sbjct: 262 A 262
>gi|334143852|ref|YP_004537008.1| (p)ppGpp synthetase I SpoT/RelA [Thioalkalimicrobium cyclicum ALM1]
gi|333964763|gb|AEG31529.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium cyclicum
ALM1]
Length = 727
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 12/158 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E ++ R K +YSI+ KM RK + +YD RALR+ V D + CY L
Sbjct: 227 GIEARVTGRPKHIYSIWKKMSRKTQSLDSLYDLRALRIYVKD---------VTECYRCLS 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH W I EFDDYI +PK +GYQS+HT V GP+G +E+QIRTQ+MH++AE+G+AAH
Sbjct: 278 LVHEKWNFIRDEFDDYITSPKDNGYQSIHTVVIGPEGKTVEIQIRTQEMHQHAEYGIAAH 337
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 333
W YKE G + + E+ I + L + DD D
Sbjct: 338 WKYKEGG---KGYDARLEASINSMRQLLEHRDDAEVFD 372
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P + +A ET LI+ LA+RLG+ LK ELEDL F L+P++++K+ +LA
Sbjct: 150 PEPVRKQIAAETQLIFAPLANRLGIAQLKWELEDLSFRFLEPKLYKKIATELA 202
>gi|388456559|ref|ZP_10138854.1| GTP pyrophosphokinase [Fluoribacter dumoffii Tex-KL]
Length = 734
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 83/122 (68%), Gaps = 9/122 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K + SI+ KM RK+V + ++YDA A+RV+V + P CY +L +VH LW
Sbjct: 256 GRSKHINSIYKKMTRKNVSLDEIYDATAVRVLVDTQ------PQ---CYEVLGMVHTLWK 306
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDYI+NPK +GYQSLHTAVQGP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 307 QIPAEFDDYIINPKSNGYQSLHTAVQGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGG 366
Query: 303 NK 304
K
Sbjct: 367 FK 368
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
+ +A ET+ I+ LA+RLG+ A+K E+EDL F L P+ ++ + L + R++
Sbjct: 176 KQLATETMEIYAPLANRLGIGAIKWEMEDLAFRHLHPEDYKAIAKGLKAKRLERDQ 231
>gi|384245518|gb|EIE19011.1| hypothetical protein COCSUDRAFT_67926 [Coccomyxa subellipsoidea
C-169]
Length = 700
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 94/153 (61%), Gaps = 16/153 (10%)
Query: 159 CEEALEK-------ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARAL 211
CEE+L++ + L G+ LS R K+L+ ++ KM K G+ +VYD RAL
Sbjct: 349 CEESLQRGSIEANLDQLKGRLAQTGIRGDLSGRPKNLWGVYRKMCAKGYGLDQVYDVRAL 408
Query: 212 RVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD 271
RVVV K+ CY +L VHRLW P++G F DYI + K +GYQSLHT V G D
Sbjct: 409 RVVVDTKSD---------CYEVLREVHRLWTPVEGRFKDYIRHKKDNGYQSLHTVVLGSD 459
Query: 272 GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
G +EVQIRTQKMH AE+G+AAHW YKE+ +
Sbjct: 460 GVPMEVQIRTQKMHWIAEYGVAAHWRYKESAAR 492
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 24 IWCSLASRLGLWALKAELEDLCFAVLQP 51
++ LA+RLG+W++KA+LEDL F VL P
Sbjct: 312 VFAPLANRLGVWSIKADLEDLAFMVLHP 339
>gi|358637763|dbj|BAL25060.1| GTP pyrophosphokinase [Azoarcus sp. KH32C]
Length = 738
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 87/125 (69%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI++KMR K + +VYD RALRV+V + ++ CY++L
Sbjct: 246 GIKAEVYGRPKHIYSIYNKMRAKRLDFSQVYDIRALRVLVAE---------VRDCYTVLG 296
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IV+++W PI EFDDYI NPK + YQSLHTAV DG ALEVQIRT MH++AE G+AAH
Sbjct: 297 IVNQIWQPIAQEFDDYISNPKGNNYQSLHTAVLAGDGRALEVQIRTYDMHKHAELGVAAH 356
Query: 296 WLYKE 300
W YKE
Sbjct: 357 WRYKE 361
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+E+L I+ LA+RLG+W LK ELEDL F L+P ++++
Sbjct: 176 VARESLDIYAPLANRLGVWQLKWELEDLSFRFLEPDTYKRI 216
>gi|194366871|ref|YP_002029481.1| RelA/SpoT family protein [Stenotrophomonas maltophilia R551-3]
gi|194349675|gb|ACF52798.1| RelA/SpoT family protein [Stenotrophomonas maltophilia R551-3]
Length = 718
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 9/139 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
K++L G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 220 KKVLSRELVAQGIRAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 272
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 273 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 330
Query: 285 HEYAEHGLAAHWLYKETGN 303
H AE G+AAHW YKE G
Sbjct: 331 HSQAELGVAAHWKYKEGGK 349
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R++ ++ R R Y
Sbjct: 159 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYRRIAREVDETRIARER--YV 216
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ ++S + + ++ + +H+ S+ + + + + FD L D R + D+
Sbjct: 217 ENVKKVLSRELVAQGIRAE---VSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDDV 273
Query: 134 A 134
A
Sbjct: 274 A 274
>gi|300113863|ref|YP_003760438.1| (p)ppGpp synthetase I [Nitrosococcus watsonii C-113]
gi|299539800|gb|ADJ28117.1| (p)ppGpp synthetase I, SpoT/RelA [Nitrosococcus watsonii C-113]
Length = 714
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K LYSI+ KM+ K++ H+++D A RV+V D ++ CY+ L
Sbjct: 226 GIQGQISGRPKHLYSIWKKMQAKNLAFHQLFDVHAFRVIVVD---------VRDCYATLS 276
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW PI EFDDYI +PKP+GY+SLHTAV P G +E+QIR+ +MHE +E G+A+H
Sbjct: 277 LVHTLWTPIPEEFDDYIAHPKPNGYRSLHTAVLDPQGKPMEIQIRSLQMHEESELGVASH 336
Query: 296 WLYKE 300
W YKE
Sbjct: 337 WRYKE 341
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
A + +AQETL I+ LA+RLG+W LK ELEDL LQPQI++++ L R R
Sbjct: 151 ATRQTLAQETLDIFAPLANRLGIWQLKWELEDLALRYLQPQIYQRLTKALDKRQVDRER 209
>gi|297538564|ref|YP_003674333.1| (p)ppGpp synthetase I SpoT/RelA [Methylotenera versatilis 301]
gi|297257911|gb|ADI29756.1| (p)ppGpp synthetase I, SpoT/RelA [Methylotenera versatilis 301]
Length = 739
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ ++ R K +YSI KM+ K + +++YD RA+R++V + I+ CY++L +
Sbjct: 257 IKAEVTGRPKHIYSIIKKMKSKRLDFNELYDVRAVRILVDE---------IKDCYTVLGM 307
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H LW PI GEFDDYI PK + Y+SLHTAV GP G ALEVQIRT +MH+++E G+AAHW
Sbjct: 308 IHNLWQPIPGEFDDYIARPKSNNYRSLHTAVSGPRGLALEVQIRTVEMHQHSELGVAAHW 367
Query: 297 LYKETG 302
YKE G
Sbjct: 368 RYKEGG 373
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
P++ + +AQE+ I+ LA+RLG+W +K ELEDL L+PQ+++ ++A M R R
Sbjct: 180 PSQQKRIAQESKGIFAPLANRLGVWQIKWELEDLSLRYLEPQLYK----EVAKMLDER-R 234
Query: 71 VGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLS-MKDLLEAVVPFDILSDRR 124
V + I +V+ + A T +H+ S +K + + F+ L D R
Sbjct: 235 VDREQYIIDVVNQLKYELSHAEIKAEVTGRPKHIYSIIKKMKSKRLDFNELYDVR 289
>gi|410696071|gb|AFV75139.1| (p)ppGpp synthetase, RelA/SpoT family [Thermus oshimai JL-2]
Length = 732
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 107/176 (60%), Gaps = 15/176 (8%)
Query: 129 FLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSL 188
L L + EA++K + ++ +EALEK+ L+ I G EVT R K L
Sbjct: 210 LLERLKEGQEAREK--------LVERAMARLKEALEKDELLQAQ-IQGFEVT--GRPKHL 258
Query: 189 YSIFSKMRRKDVGIHKVYDARALRVVVGDK-NGTLHGPAI---QCCYSLLDIVHRLWIPI 244
YSI+ KM R+ + ++YD A+RV++ K + T ++ Q CY +L +VH LW PI
Sbjct: 259 YSIWKKMEREGKALEQIYDLLAVRVILDPKPSATEEARSLREKQVCYHVLGLVHALWQPI 318
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
G DYI PKP+GYQSLHT V +G LEVQIRT++MH+ AE+G+AAHWLYKE
Sbjct: 319 PGRVKDYIAVPKPNGYQSLHTTVIALEGLPLEVQIRTREMHKVAEYGIAAHWLYKE 374
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+PP K R +AQETL I+ LA RLG+ +K ELEDL F L P+ ++ +
Sbjct: 162 MPPEKQRRIAQETLEIYAPLAHRLGMGQIKWELEDLSFRYLHPEAYQSL 210
>gi|302877551|ref|YP_003846115.1| RelA/SpoT family protein [Gallionella capsiferriformans ES-2]
gi|302580340|gb|ADL54351.1| RelA/SpoT family protein [Gallionella capsiferriformans ES-2]
Length = 645
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 92/141 (65%), Gaps = 12/141 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E ++ R K +YSI +KM+RK + ++YD RA+R++V D +Q CY+ L
Sbjct: 246 GIEAEVTGRPKHIYSIINKMKRKHLAFDELYDVRAVRILVDD---------VQSCYASLS 296
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I E+DDYI PK + Y+SLHTAV GP EVQIRT++MH+Y+E G+AAH
Sbjct: 297 LVHDLWTQIGSEYDDYIARPKSNNYRSLHTAVIGPREQNFEVQIRTREMHQYSELGVAAH 356
Query: 296 WLYKETGNKLQSISSMDESDI 316
W YKE G ++ + +DE I
Sbjct: 357 WRYKEGG---KTDAKLDEKII 374
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
P + + +AQET ++ LA+RLG+W +K ELEDL L P +++++ A + R R
Sbjct: 170 PDEQKLIAQETQSLFAPLANRLGVWQIKWELEDLSVRYLDPVLYKQV----ARLLDER-R 224
Query: 71 VGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAV-VPFDILSDRR 124
V R I +V A + T +H+ S+ + ++ + FD L D R
Sbjct: 225 VDRERYIDDVVQQLKRTLSAAGIEAEVTGRPKHIYSIINKMKRKHLAFDELYDVR 279
>gi|319943391|ref|ZP_08017673.1| GTP diphosphokinase [Lautropia mirabilis ATCC 51599]
gi|319743206|gb|EFV95611.1| GTP diphosphokinase [Lautropia mirabilis ATCC 51599]
Length = 791
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K LYSI +K+R K + + K++D RALRV+V + CY+ LD
Sbjct: 284 GIQAQVKGRSKHLYSIHNKLRAKHLSLEKLHDLRALRVMV---------ETLADCYATLD 334
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH+ W+P E DDYI +PKP+GYQSLHT V DG +EVQIRT+ MHE AE+GLAAH
Sbjct: 335 LVHQRWVPEMDELDDYIADPKPNGYQSLHTVVMADDGRPMEVQIRTRAMHEAAEYGLAAH 394
Query: 296 WLYKE 300
W YKE
Sbjct: 395 WRYKE 399
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A + +AQE + + LA+RLGL+ +K E+EDL F L+P +R++
Sbjct: 209 ADVQGLAQEAMQVLAPLANRLGLYRIKWEMEDLAFRCLEPARYREL 254
>gi|190575543|ref|YP_001973388.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia K279a]
gi|190013465|emb|CAQ47100.1| putative GTP pyrophosphokinase [Stenotrophomonas maltophilia K279a]
Length = 718
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 231 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 281
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 282 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 341
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 342 WKYKEGGK 349
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R++
Sbjct: 159 RAMAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYRRI 201
>gi|386719610|ref|YP_006185936.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia D457]
gi|384079172|emb|CCH13770.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia D457]
Length = 677
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 9/139 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
K++L G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D
Sbjct: 179 KKVLSRELVAQGIRAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD------- 231
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
+ CY+ L +VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +M
Sbjct: 232 --VAACYAALGVVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEM 289
Query: 285 HEYAEHGLAAHWLYKETGN 303
H AE G+AAHW YKE G
Sbjct: 290 HSQAELGVAAHWKYKEGGK 308
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R++ ++ R R Y
Sbjct: 118 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYRRIAREVDETRIARER--YV 175
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ ++S + + ++ + +H+ S+ + + + + FD L D R + D+
Sbjct: 176 ENVKKVLSRELVAQGIRAE---VSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDDV 232
Query: 134 A 134
A
Sbjct: 233 A 233
>gi|424669853|ref|ZP_18106878.1| RelA/SpoT family protein [Stenotrophomonas maltophilia Ab55555]
gi|401071924|gb|EJP80435.1| RelA/SpoT family protein [Stenotrophomonas maltophilia Ab55555]
Length = 706
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 219 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 269
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 270 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 329
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 330 WKYKEGGK 337
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R++
Sbjct: 147 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYRRI 189
>gi|309792557|ref|ZP_07687019.1| RelA/SpoT family protein [Oscillochloris trichoides DG-6]
gi|308225371|gb|EFO79137.1| RelA/SpoT family protein [Oscillochloris trichoides DG6]
Length = 809
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 12/140 (8%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
+ALEKE G+ +S R K +YSI+ KM RK + + ++YD A+RV++ +++
Sbjct: 304 DALEKE---------GISAQVSGRPKHIYSIWRKMDRKGLPLERIYDQLAVRVIIQERDP 354
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
A+ CY +L +VH LW P+ EFDDYI PK S YQSLHT V P G+ EVQIR
Sbjct: 355 ER---AVGICYRVLGVVHMLWTPVLSEFDDYIAVPKESSYQSLHTTVLIPGGTPCEVQIR 411
Query: 281 TQKMHEYAEHGLAAHWLYKE 300
T++MH+ AEHG+AAHW YKE
Sbjct: 412 TEEMHQIAEHGIAAHWRYKE 431
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
A PP K R VA+ETL I+ LA RLG+W +K+ELEDL F + P ++++ L
Sbjct: 231 ATPPHKQRRVARETLDIYAPLAHRLGMWQVKSELEDLAFKAMNPDRYQEIAQGLTLRKEA 290
Query: 68 RNRV 71
R R+
Sbjct: 291 RERI 294
>gi|153872438|ref|ZP_02001331.1| RelA/SpoT family protein [Beggiatoa sp. PS]
gi|152071096|gb|EDN68669.1| RelA/SpoT family protein [Beggiatoa sp. PS]
Length = 740
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 88/139 (63%), Gaps = 14/139 (10%)
Query: 162 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 221
+L K LL S ++ +S R K LYSI+ KM+RK++G +++D RA+RV+V
Sbjct: 240 SLSKALLKS-----NIKADISGRPKHLYSIWHKMQRKNLGFEQIFDVRAVRVLVN----- 289
Query: 222 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 281
I CY +L I+H LW P+ EFDDYI N K + YQSLHTAV GP+ EVQIRT
Sbjct: 290 ----TINECYMVLGIIHNLWQPLRNEFDDYIANSKSNNYQSLHTAVIGPEQKIFEVQIRT 345
Query: 282 QKMHEYAEHGLAAHWLYKE 300
MH +AE G+A+HW YKE
Sbjct: 346 HSMHHHAEFGVASHWRYKE 364
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR- 68
P K + +A+ETL ++ LA+RLG+W +K ELEDL L+P I++KM A + R
Sbjct: 172 PVEKQQRMARETLDLFAPLANRLGIWQIKWELEDLSLRYLEPDIYQKM----AQLLDERR 227
Query: 69 -NRVGYSRRITTIVSSPPLDERTASD 93
+R Y R++ +S L +D
Sbjct: 228 VDRENYIRQVMASLSKALLKSNIKAD 253
>gi|456734351|gb|EMF59167.1| GTP pyrophosphokinase [Stenotrophomonas maltophilia EPM1]
Length = 677
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 190 GIHAEVSGRPKHIYSIWRKMQKKRLAFDQLYDIRAVRVMVDD---------VAACYAALG 240
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 241 VVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEVQIRTHEMHSQAELGVAAH 300
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 301 WKYKEGGK 308
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W LK ELEDL F L+P+ +R++
Sbjct: 118 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRHLEPETYRRI 160
>gi|438000121|ref|YP_007183854.1| hypothetical protein CKBE_00588 [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813053|ref|YP_007449506.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339355|gb|AFZ83777.1| hypothetical protein CKBE_00588 [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779022|gb|AGF49902.1| GTP pyrophosphokinase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 340
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ RLK +YSI++KM K+V K+YD ALR+VV D ++ CY +LD
Sbjct: 210 GIKAEITGRLKHIYSIWNKMLIKNVDFAKLYDLSALRIVVKD---------VKTCYMVLD 260
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH+LW I EFDDYI PKP+GYQSLHT V +E+QIRT MH +AE+GLAAH
Sbjct: 261 IVHKLWSHIPEEFDDYISRPKPNGYQSLHTVVIDKYNYLIEIQIRTGDMHNFAEYGLAAH 320
Query: 296 WLYKE 300
W YK+
Sbjct: 321 WYYKK 325
>gi|374264055|ref|ZP_09622600.1| hypothetical protein LDG_9071 [Legionella drancourtii LLAP12]
gi|363535622|gb|EHL29071.1| hypothetical protein LDG_9071 [Legionella drancourtii LLAP12]
Length = 734
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 82/119 (68%), Gaps = 9/119 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K ++SI+ KM RK+V + ++YDA A+RV+V + P CY +L IVH LW
Sbjct: 257 RSKHIHSIYKKMTRKNVALDEIYDATAVRVLVTTE------PQ---CYEVLGIVHTLWKQ 307
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDYI NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE G
Sbjct: 308 IPAEFDDYIFNPKANGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKEGG 366
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 2 VFEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
+ + LP A +A E + I+ LA+RLG+ A+K E+EDL F L P+ ++ + L
Sbjct: 163 ILRVTAHLPEALRIQIATEAMEIYAPLANRLGIGAIKWEMEDLAFRHLHPEDYKAIAKGL 222
Query: 62 AS 63
+
Sbjct: 223 KA 224
>gi|114776357|ref|ZP_01451402.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
gi|114553187|gb|EAU55585.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
Length = 711
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ T+ R+K LYSI KM+RK V ++D A RV+V D Q CY L
Sbjct: 228 GLAATVHGRMKHLYSIHEKMQRKHVNFDDIFDLIAFRVIVDDA---------QTCYQALG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ P+ G F DYI PKP+GYQSLHTAV GP+ +E+QIRT MH YAE G+A+H
Sbjct: 279 IVHSLYRPVPGRFKDYIALPKPNGYQSLHTAVIGPENFRIEIQIRTHLMHSYAEDGVASH 338
Query: 296 WLYKE 300
W YKE
Sbjct: 339 WAYKE 343
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
+P K R + +ETL I+ LA RLG+ +K E+EDL F+ L+P+ ++ + ++
Sbjct: 150 VPEHKRRRIGEETLQIYAPLAHRLGMHWIKQEMEDLVFSHLEPEAYKALMVEM 202
>gi|89094556|ref|ZP_01167494.1| GTP pyrophosphokinase [Neptuniibacter caesariensis]
gi|89081155|gb|EAR60389.1| GTP pyrophosphokinase [Oceanospirillum sp. MED92]
Length = 754
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 11/156 (7%)
Query: 160 EEALEKELLISTSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 217
+E +++ +L S + G+ + +S R K +YSI+ KM+RK++ +VYD RA+R++V
Sbjct: 240 QEYIDRVVLRLESELEGVNIDGDVSGRAKHIYSIWRKMQRKNIEFSQVYDVRAVRILV-- 297
Query: 218 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 277
P + CY++L IVH LW I EFDDY+ +PKP+GY+SLHTAV GP+G LE+
Sbjct: 298 -------PHSRDCYAVLGIVHSLWRNIPHEFDDYVASPKPNGYRSLHTAVFGPEGKVLEI 350
Query: 278 QIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 313
QIRT MHE AE G+ AH LYK T + +S + D+
Sbjct: 351 QIRTYDMHEEAELGVCAHHLYKGTDTRSKSDAYEDK 386
>gi|192360692|ref|YP_001983035.1| GTP pyrophosphokinase [Cellvibrio japonicus Ueda107]
gi|190686857|gb|ACE84535.1| GTP pyrophosphokinase [Cellvibrio japonicus Ueda107]
Length = 748
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 92/138 (66%), Gaps = 9/138 (6%)
Query: 167 LLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPA 226
LL + + G++ +S R K +YSI+ KM+RK + +VYD RA+R++V P
Sbjct: 250 LLRNELHKAGIDGEVSGRAKHIYSIWRKMQRKGIPFSQVYDIRAVRILV---------PT 300
Query: 227 IQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHE 286
++ CY++L IVH LW I EFDDYI +PK +GY+SLHTAV GP+ LE+QIRT++MHE
Sbjct: 301 VRDCYAVLGIVHSLWRNIPHEFDDYIASPKENGYRSLHTAVWGPENKVLEIQIRTREMHE 360
Query: 287 YAEHGLAAHWLYKETGNK 304
+E G+ AHW YK T K
Sbjct: 361 ESELGVCAHWRYKGTDTK 378
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R VA+E I+ LA RLG+ +K ELEDL F LQP+ ++++
Sbjct: 183 PDRRRQVAREVADIYAPLAHRLGIGHIKWELEDLSFRYLQPEEYKRI 229
>gi|431926786|ref|YP_007239820.1| RelA/SpoT family (p)ppGpp synthetase [Pseudomonas stutzeri RCH2]
gi|431825073|gb|AGA86190.1| (p)ppGpp synthetase, RelA/SpoT family [Pseudomonas stutzeri RCH2]
Length = 747
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKET 301
W YK T
Sbjct: 366 WRYKGT 371
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|225023659|ref|ZP_03712851.1| hypothetical protein EIKCOROL_00522 [Eikenella corrodens ATCC
23834]
gi|224943541|gb|EEG24750.1| hypothetical protein EIKCOROL_00522 [Eikenella corrodens ATCC
23834]
Length = 737
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 9/123 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + +YD RA+RV+V ++ CY++L IVH L
Sbjct: 257 VAGRPKHIYSIYRKMVKKKLDFEGLYDIRAVRVLVN---------SVPECYTVLGIVHSL 307
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT++MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGIEVQIRTKEMHQFNEFGVAAHWRYKE 367
Query: 301 TGN 303
G
Sbjct: 368 GGK 370
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R++A+ETL I+ LA+RLG+W LK +LEDL F P+ +R++
Sbjct: 179 RSIAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQNPEEYRRI 221
>gi|325923889|ref|ZP_08185489.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas gardneri ATCC
19865]
gi|325545625|gb|EGD16879.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas gardneri ATCC
19865]
Length = 729
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L ++ G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 222 VARERYLETVKRTLSTSLTQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 281
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 282 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVLGPEGRT 332
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 333 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 361
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 171 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 213
>gi|257092684|ref|YP_003166325.1| (p)ppGpp synthetase I SpoT/RelA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045208|gb|ACV34396.1| (p)ppGpp synthetase I, SpoT/RelA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 753
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K +YSI++KMR+K V +VYD RALRV+V + ++ CY+ L IVH +
Sbjct: 272 IYGRPKHIYSIWNKMRKKGVEFSEVYDVRALRVIVEE---------VRDCYTALGIVHHI 322
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI +PK + Y+SLHTAV PDG A+EVQIRT++MH +AE G+AAHW YKE
Sbjct: 323 WSPIAKEFDDYISHPKGNDYRSLHTAVHCPDGRAIEVQIRTREMHRHAELGVAAHWRYKE 382
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 7 YALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
YA P + R VA+ETL ++ LA+RLG+W LK ELEDL F L P+I++++
Sbjct: 185 YAAEPDELRVPVARETLELYSPLANRLGVWELKWELEDLSFRYLHPEIYKEI 236
>gi|392420864|ref|YP_006457468.1| GTP pyrophosphokinase [Pseudomonas stutzeri CCUG 29243]
gi|452750395|ref|ZP_21950145.1| GTP pyrophosphokinase [Pseudomonas stutzeri NF13]
gi|390983052|gb|AFM33045.1| GTP pyrophosphokinase [Pseudomonas stutzeri CCUG 29243]
gi|452005768|gb|EMD98050.1| GTP pyrophosphokinase [Pseudomonas stutzeri NF13]
Length = 747
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKET 301
W YK T
Sbjct: 366 WRYKGT 371
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|146283008|ref|YP_001173161.1| GTP pyrophosphokinase [Pseudomonas stutzeri A1501]
gi|386021388|ref|YP_005939412.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 4166]
gi|145571213|gb|ABP80319.1| GTP pyrophosphokinase [Pseudomonas stutzeri A1501]
gi|327481360|gb|AEA84670.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 4166]
Length = 747
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKET 301
W YK T
Sbjct: 366 WRYKGT 371
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ +++ +A + R R+
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQ----IAQLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTAS 92
+ IT +V DE TA+
Sbjct: 236 REQYITNVVQQLK-DELTAA 254
>gi|325914168|ref|ZP_08176521.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas vesicatoria ATCC
35937]
gi|325539671|gb|EGD11314.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas vesicatoria ATCC
35937]
Length = 727
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E +E K L S G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYIEAVKRALSSALAGQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAIRVM 279
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 359
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 169 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 211
>gi|418294259|ref|ZP_12906155.1| GTP pyrophosphokinase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379065638|gb|EHY78381.1| GTP pyrophosphokinase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 747
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPDIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKET 301
W YK T
Sbjct: 366 WRYKGT 371
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ ++++
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQI 225
>gi|313679281|ref|YP_004057020.1| (p)ppGpp synthetase I SpoT/RelA [Oceanithermus profundus DSM 14977]
gi|313151996|gb|ADR35847.1| (p)ppGpp synthetase I, SpoT/RelA [Oceanithermus profundus DSM
14977]
Length = 734
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 105/172 (61%), Gaps = 15/172 (8%)
Query: 133 LAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIF 192
LA S+A ++ VV +A AL E ALE + ++ S + G V S R K L+SI+
Sbjct: 212 LAHHSQAHRE--VVDNAKGAL------EHALENDYVLGLS-VDGFSV--SGRTKHLFSIW 260
Query: 193 SKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI----QCCYSLLDIVHRLWIPIDGEF 248
KM+R++ + ++YD ALRV++ K A Q CY +L +VH LW PI G
Sbjct: 261 KKMQREEKTLEQIYDLLALRVILDPKPVASPEEAASREKQVCYHVLGLVHALWPPIPGRV 320
Query: 249 DDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
DYI PKP+GYQSLHT V P G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 321 KDYIAQPKPNGYQSLHTTVITPGGLPLEVQIRTREMHRVAEYGVAAHWLYKE 372
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
+PP K R +++ETL I+ +A RLG+ +K ELEDL F L P+ + + LA
Sbjct: 160 MPPEKQRRISKETLEIFAPMAHRLGIGQIKLELEDLAFRYLHPEEYAALVERLA 213
>gi|222151518|ref|YP_002560674.1| GTP pyrophosphokinase [Macrococcus caseolyticus JCSC5402]
gi|222120643|dbj|BAH17978.1| GTP pyrophosphokinase [Macrococcus caseolyticus JCSC5402]
Length = 730
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 15/160 (9%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
I G+ ++ R K +YSI+ KM ++ +++D A+R++V +I+ CY++
Sbjct: 231 ITGINGEITGRPKHIYSIYRKMVKQKKQFDQIFDLLAIRIIVD---------SIKDCYAV 281
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH LW P+ G F DYI PKP+ YQSLHT V GP+G LE+QIRT +MHE AEHG+A
Sbjct: 282 LGLVHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVA 341
Query: 294 AHWLYKE-----TGNKLQSISSMD-ESDIEASSSLSKDTD 327
AHW YKE ++ +S+S M +IE + S S D +
Sbjct: 342 AHWAYKEGKSLVNPDEARSLSKMSWMQEIEETDSTSPDAE 381
>gi|399114593|emb|CCG17387.1| GTP pyrophosphokinase [Taylorella equigenitalis 14/56]
Length = 753
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 9/135 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K ++SI++KM+ K + +YD A+RV+V + CY+ L
Sbjct: 252 GIRAEVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQTERD---------CYTTLS 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 FVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDSNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 296 WLYKETGNKLQSISS 310
W YKE G+K ++S+
Sbjct: 363 WRYKEAGSKGGAVSA 377
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 19 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
Q+ I+ LA+RLG+W +K ELEDL F PQ +R + L + + R ++
Sbjct: 184 QQNRNIYAPLANRLGIWQIKWELEDLSFRFENPQEYRDIANKLEATRAEREQL 236
>gi|329118474|ref|ZP_08247179.1| GTP diphosphokinase [Neisseria bacilliformis ATCC BAA-1200]
gi|327465415|gb|EGF11695.1| GTP diphosphokinase [Neisseria bacilliformis ATCC BAA-1200]
Length = 736
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 82/122 (67%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
L+ R K +YSI+ KM +K + +YD RA+R++V ++ CY+ L IVH L
Sbjct: 257 LAGRPKHIYSIYKKMVKKKLDFDGLYDIRAVRILVD---------SVAECYTTLGIVHSL 307
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GYQSLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIANPKGNGYQSLHTVIVGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 301 TG 302
G
Sbjct: 368 GG 369
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+A+ETL I+ LA+RLG+W LK +LEDL F P+ +R++
Sbjct: 179 RAIAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQNPEEYRRI 221
>gi|319779240|ref|YP_004130153.1| GTP pyrophosphokinase [Taylorella equigenitalis MCE9]
gi|397661480|ref|YP_006502180.1| GTP pyrophosphokinase [Taylorella equigenitalis ATCC 35865]
gi|317109264|gb|ADU92010.1| GTP pyrophosphokinase [Taylorella equigenitalis MCE9]
gi|394349659|gb|AFN35573.1| GTP pyrophosphokinase [Taylorella equigenitalis ATCC 35865]
Length = 753
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 9/135 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K ++SI++KM+ K + +YD A+RV+V + CY+ L
Sbjct: 252 GIRAEVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQTERD---------CYTTLS 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 FVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDSNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 296 WLYKETGNKLQSISS 310
W YKE G+K ++S+
Sbjct: 363 WRYKEAGSKGGAVSA 377
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 19 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
Q+ I+ LA+RLG+W +K ELEDL F PQ +R + L + + R ++
Sbjct: 184 QQNRNIYAPLANRLGIWQIKWELEDLSFRFENPQEYRDIANKLEATRAEREQL 236
>gi|171463693|ref|YP_001797806.1| GTP diphosphokinase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193231|gb|ACB44192.1| GTP diphosphokinase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 678
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K +YSI+ KM+ + + +YD RA RV+V D I+ CY+ L I
Sbjct: 211 IEGEVLGRPKHIYSIWKKMQGRSLDFANLYDVRAFRVLVDD---------IKSCYAALGI 261
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH +W P+ EFDDYI PKP+GYQSLHT V DG+A E+Q+RT +MH+ AE+GLAAHW
Sbjct: 262 VHNVWQPVSREFDDYIARPKPNGYQSLHTVVMDDDGTAFEIQVRTHEMHQQAEYGLAAHW 321
Query: 297 LYKE 300
YKE
Sbjct: 322 RYKE 325
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A AQE L I SLA+RLG+W +K E+EDL F L P +R++
Sbjct: 139 AWAQEILNIDASLANRLGIWQMKWEMEDLAFRALSPDTYREI 180
>gi|15837917|ref|NP_298605.1| ATP:GTP 3'-pyrophosphotransferase [Xylella fastidiosa 9a5c]
gi|9106309|gb|AAF84125.1|AE003964_9 ATP:GTP 3'-pyrophosphotranferase [Xylella fastidiosa 9a5c]
Length = 718
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+G +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKENDYRSLHTAVLGPEGRTVEVQIRTHEMHAHAELGVAAH 344
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 345 WKYKEGGK 352
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV
Sbjct: 159 SQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFRYLESEIYRSIASALDE-----SRV 213
Query: 72 GYSRRITTI 80
R I+ I
Sbjct: 214 ARERYISVI 222
>gi|393758439|ref|ZP_10347260.1| GTP pyrophosphokinase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393164858|gb|EJC64910.1| GTP pyrophosphokinase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 764
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 87/135 (64%), Gaps = 9/135 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K ++SI++KMR K + +++D RALRV+V D+ + CY L +VH L
Sbjct: 252 VSGRPKHIFSIWNKMRNKHLDFEQLFDLRALRVIVEDE---------RSCYHTLAVVHSL 302
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ EFDDYI PKP+GY+SLHT + G E+QIRT+ MH++AE+G+AAHW YKE
Sbjct: 303 WTPVPEEFDDYISRPKPNGYRSLHTVIADAQGRCFEIQIRTRDMHQFAEYGMAAHWRYKE 362
Query: 301 TGNKLQSISSMDESD 315
G + ++ E D
Sbjct: 363 AGAQGGQQTADGEDD 377
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A+ETL ++ LA+RLG+W +K E+EDL F L P++++ + L
Sbjct: 178 ARETLELYTPLANRLGIWQIKWEMEDLAFRFLNPEVYKDIAGRL 221
>gi|345863304|ref|ZP_08815516.1| GTP pyrophosphokinase [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125765|gb|EGW55633.1| GTP pyrophosphokinase [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 683
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK V I +++D RA+RV+V D + CY++L
Sbjct: 198 GIQAGISGRPKHIYSIWRKMQRKAVDIEQIFDLRAVRVLVED---------VADCYAVLG 248
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I GEFDDYI PK + YQS+HTAV GP+ LEVQIRT MH ++E G+AAH
Sbjct: 249 IVHSLWRHIPGEFDDYIATPKTNMYQSIHTAVIGPEDKTLEVQIRTHDMHHHSELGVAAH 308
Query: 296 WLYKET 301
W YKE
Sbjct: 309 WRYKEN 314
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
P R +A++T I+ LA+RLG+W +K ELEDL L+P+ ++++ + L S R
Sbjct: 120 FPAEIQRRIAEQTRSIYAPLANRLGIWQIKWELEDLSLRFLEPEAYKRIASQLDGRRSDR 179
>gi|345877758|ref|ZP_08829496.1| dihydroneopterin aldolase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344225209|gb|EGV51574.1| dihydroneopterin aldolase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 734
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK V I +++D RA+RV+V D + CY++L
Sbjct: 249 GIQAGISGRPKHIYSIWRKMQRKAVDIEQIFDLRAVRVLVED---------VADCYAVLG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I GEFDDYI PK + YQS+HTAV GP+ LEVQIRT MH ++E G+AAH
Sbjct: 300 IVHSLWRHIPGEFDDYIATPKTNMYQSIHTAVIGPEDKTLEVQIRTHDMHHHSELGVAAH 359
Query: 296 WLYKET 301
W YKE
Sbjct: 360 WRYKEN 365
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
P R +A++T I+ LA+RLG+W +K ELEDL L+P+ ++++ + L S R
Sbjct: 171 FPAEIQRRIAEQTRSIYAPLANRLGIWQIKWELEDLSLRFLEPEAYKRIASQLDGRRSDR 230
>gi|421616773|ref|ZP_16057775.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|421617261|ref|ZP_16058255.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|409780759|gb|EKN60376.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
gi|409781254|gb|EKN60856.1| GTP pyrophosphokinase [Pseudomonas stutzeri KOS6]
Length = 747
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIPADIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAH 365
Query: 296 WLYKET 301
W YK T
Sbjct: 366 WRYKGT 371
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K + VA+E I+ LA RLG+ +K ELEDL F L+P+ +++ +A + R R+
Sbjct: 181 KRQRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQ----IAQLLHER-RLD 235
Query: 73 YSRRITTIVSSPPLDERTAS 92
+ IT +V DE TA+
Sbjct: 236 REQYITNVVQQLK-DELTAT 254
>gi|224824791|ref|ZP_03697898.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania ferrooxidans
2002]
gi|224603284|gb|EEG09460.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania ferrooxidans
2002]
Length = 733
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 89/127 (70%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KMR+K++ ++YD RA+RV+V +++ CY++L
Sbjct: 252 GVNGEVAGRPKHIYSIWKKMRKKNLDFSELYDIRAVRVLV---------ESVKDCYTVLG 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W P+ GEFDDYI +PK + Y+SLHTAV GP+ +EVQIRT MHE+AE G+AAH
Sbjct: 303 LIHSMWQPVPGEFDDYISHPKANDYRSLHTAVIGPEDRVIEVQIRTFDMHEHAEFGVAAH 362
Query: 296 WLYKETG 302
W YKE G
Sbjct: 363 WRYKEGG 369
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P RA+AQET+ ++ LA+RLG+W +K ELEDL F ++P+ ++K+
Sbjct: 175 PEPVRRAIAQETMDVFAPLANRLGVWQIKWELEDLAFRHIEPENYKKI 222
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 494 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 553
+A+ K+ LR +L W E++ + L + + + + + V PNG ++
Sbjct: 372 DAAYEEKISWLRQLLDWREEVSDRSGLTDAF---------KTELFSDTIYVLTPNGRVLA 422
Query: 554 LRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 595
L SG+TA D A + G + V GQ+V +T L++G VE+
Sbjct: 423 LPSGATAIDFAYAIHTDLGHRCRGAKVEGQIVPLSTPLQNGQRVEI 468
>gi|395008896|ref|ZP_10392492.1| (p)ppGpp synthetase, RelA/SpoT family [Acidovorax sp. CF316]
gi|394313118|gb|EJE50199.1| (p)ppGpp synthetase, RelA/SpoT family [Acidovorax sp. CF316]
Length = 742
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 11/141 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ ++ R K +YSI KMR K + +VYD RALRVVV P ++ CY+ L
Sbjct: 249 ISASVQGRPKHIYSIVKKMRGKSLNFDQVYDIRALRVVV---------PTVKDCYAALSW 299
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-DGSALEVQIRTQKMHEYAEHGLAAH 295
VH+ + PI EFDDYI PK +GYQSLHT V+ +G +E+QIRTQ MHE+AEHG+AAH
Sbjct: 300 VHQRFAPIVEEFDDYIAKPKANGYQSLHTIVRDDLNGKPIEIQIRTQAMHEHAEHGVAAH 359
Query: 296 WLYKETGNK-LQSISSMDESD 315
W YKE G K +S+ E D
Sbjct: 360 WAYKEAGAKGYVGVSATGEYD 380
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 32/42 (76%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++A+E+L ++ LA+RLG+W +K ELEDL F L+P ++++
Sbjct: 177 SLARESLQVFAQLANRLGIWQVKWELEDLSFRFLEPDTYKEV 218
>gi|54294502|ref|YP_126917.1| GTP pyrophosphokinase [Legionella pneumophila str. Lens]
gi|53754334|emb|CAH15811.1| GTP pyrophosphokinase [Legionella pneumophila str. Lens]
Length = 734
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 256 GRSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWK 306
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 307 QIPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
>gi|148358987|ref|YP_001250194.1| GTP pyrophosphokinase [Legionella pneumophila str. Corby]
gi|296107036|ref|YP_003618736.1| GTP pyrophosphokinase [Legionella pneumophila 2300/99 Alcoy]
gi|148280760|gb|ABQ54848.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila str. Corby]
gi|295648937|gb|ADG24784.1| GTP pyrophosphokinase [Legionella pneumophila 2300/99 Alcoy]
Length = 734
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 256 GRSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWK 306
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 307 QIPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
>gi|54297368|ref|YP_123737.1| GTP pyrophosphokinase [Legionella pneumophila str. Paris]
gi|378777322|ref|YP_005185759.1| GTP pyrophosphokinase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|53751153|emb|CAH12564.1| GTP pyrophosphokinase [Legionella pneumophila str. Paris]
gi|364508136|gb|AEW51660.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 734
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 256 GRSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWK 306
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 307 QIPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
>gi|52841687|ref|YP_095486.1| GTP pyrophosphokinase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|397663890|ref|YP_006505428.1| (p)ppGpp synthetase I [Legionella pneumophila subsp. pneumophila]
gi|52628798|gb|AAU27539.1| GTP pyrophosphokinase ((p)ppGpp synthetase I) stringent stress
response RelA [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|395127301|emb|CCD05491.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Legionella pneumophila
subsp. pneumophila]
Length = 734
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 256 GRSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWK 306
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 307 QIPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
>gi|384420219|ref|YP_005629579.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463132|gb|AEQ97411.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 728
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 360
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 170 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 212
>gi|397667075|ref|YP_006508612.1| (p)ppGpp synthetase I [Legionella pneumophila subsp. pneumophila]
gi|395130486|emb|CCD08728.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Legionella pneumophila
subsp. pneumophila]
Length = 734
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K ++SI+ KM+RK+V + ++YDA A+R++V + CY +L +VH LW
Sbjct: 256 GRSKHIHSIYKKMKRKNVSLDEIYDATAVRILVDTE---------AQCYEVLGMVHTLWK 306
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 307 QIPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
>gi|188577401|ref|YP_001914330.1| GTP pyrophosphokinase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521853|gb|ACD59798.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 728
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 360
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+AQ T I LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 171 ALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 212
>gi|220932056|ref|YP_002508964.1| (p)ppGpp synthetase I SpoT/RelA [Halothermothrix orenii H 168]
gi|219993366|gb|ACL69969.1| (p)ppGpp synthetase I, SpoT/RelA [Halothermothrix orenii H 168]
Length = 716
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K LYSI+ KM+RK+V +++YD A+R++V +++ CY +L
Sbjct: 227 GILAEIYGRPKHLYSIYQKMKRKEVDFNEIYDLTAIRIIVN---------SVKECYEVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 278 IVHEIWKPIPGRFKDYIAMPKSNMYQSLHTTVIGPKGDPLEVQIRTPEMHRTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
>gi|399116544|emb|CCG19351.1| GTP pyrophosphokinase [Taylorella asinigenitalis 14/45]
Length = 761
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 9/135 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K ++SI++KM+ K + +YD A+RV+V ++ CY+ L
Sbjct: 252 GIQSDVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQNERD---------CYTTLS 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 YVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDDNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 296 WLYKETGNKLQSISS 310
W YKE G K ++S+
Sbjct: 363 WRYKEAGAKGGTVSA 377
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 19 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
Q+ ++ LA+RLG+W +K ELEDL F P+ +R++ L S + R ++
Sbjct: 184 QQNRTLYAPLANRLGIWQIKWELEDLSFRFENPETYREIANRLESTRAEREQL 236
>gi|348589862|ref|YP_004874324.1| GTP pyrophosphokinase [Taylorella asinigenitalis MCE3]
gi|347973766|gb|AEP36301.1| GTP pyrophosphokinase [Taylorella asinigenitalis MCE3]
Length = 761
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 9/135 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K ++SI++KM+ K + +YD A+RV+V ++ CY+ L
Sbjct: 252 GIQSDVSGRAKHIFSIYNKMKNKSLKFEDLYDLLAIRVIVQNERD---------CYTTLS 302
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + P+ +FDDYI PKP+GY+SLHT V+ +G+ EVQIRTQKMHE+AE+G+AAH
Sbjct: 303 YVHSNYHPVMEQFDDYIARPKPNGYRSLHTVVRDDNGAVFEVQIRTQKMHEFAEYGMAAH 362
Query: 296 WLYKETGNKLQSISS 310
W YKE G K ++S+
Sbjct: 363 WRYKEAGAKGGTVSA 377
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 19 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
Q+ ++ LA+RLG+W +K ELEDL F P+ +R++ L + + R ++
Sbjct: 184 QQNRTLYAPLANRLGIWQIKWELEDLSFRFENPETYREIANRLEATRAEREQL 236
>gi|66767501|ref|YP_242263.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|66572833|gb|AAY48243.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
campestris str. 8004]
Length = 723
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 237 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 287
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 288 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 347
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 348 WKYKEGGK 355
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W +K ELEDL F L+P +R++ D+ R R Y
Sbjct: 165 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRIARDVDETRVARER--YI 222
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ +S+ + +D + +H+ S+ + + + + FD L D R + D+
Sbjct: 223 EAVKRTLSAALAQQGLRAD---VSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDDV 279
Query: 134 A 134
A
Sbjct: 280 A 280
>gi|21232367|ref|NP_638284.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21114142|gb|AAM42208.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 723
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 237 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 287
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 288 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 347
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 348 WKYKEGGK 355
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W +K ELEDL F L+P +R++ D+ R R Y
Sbjct: 165 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRIARDVDETRVARER--YI 222
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ +S+ + +D + +H+ S+ + + + + FD L D R + D+
Sbjct: 223 EAVKRTLSAALAQQGLRAD---VSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDDV 279
Query: 134 A 134
A
Sbjct: 280 A 280
>gi|372270282|ref|ZP_09506330.1| GTP pyrophosphokinase [Marinobacterium stanieri S30]
Length = 758
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 83/119 (69%), Gaps = 9/119 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+RK + ++VYD RA+R++V P I+ CY++L IVH LW
Sbjct: 265 GRAKHIYSIWRKMQRKSIDFNQVYDVRAVRILV---------PEIRDCYTVLGIVHGLWR 315
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 301
I EFDDYI +PKP+GY+SLHTAV GP+G LE+QIRT MHE AE G+ AH LYK T
Sbjct: 316 NIPHEFDDYIASPKPNGYRSLHTAVFGPEGKVLEIQIRTFSMHEEAELGVCAHHLYKGT 374
>gi|237809484|ref|YP_002893924.1| (p)ppGpp synthetase I SpoT/RelA [Tolumonas auensis DSM 9187]
gi|237501745|gb|ACQ94338.1| (p)ppGpp synthetase I, SpoT/RelA [Tolumonas auensis DSM 9187]
Length = 743
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K++ +YD RA+RVV +Q CY+ L
Sbjct: 241 GIDAEVYGRPKHIYSIWRKMQKKNLNFSDLYDVRAVRVVT---------KRLQDCYAALG 291
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MH+ +E G+AAH
Sbjct: 292 IIHTLWHHIPREFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTEQMHQESELGVAAH 351
Query: 296 WLYKE 300
W YKE
Sbjct: 352 WKYKE 356
>gi|397687585|ref|YP_006524904.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 10701]
gi|395809141|gb|AFN78546.1| GTP pyrophosphokinase [Pseudomonas stutzeri DSM 10701]
Length = 747
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++YD RA+RV+V P ++ CY+ L
Sbjct: 255 GIQPEIDGRAKHIYSIWRKMQKKGLQFSQIYDVRAVRVLV---------PEVRDCYTALG 305
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI NPK +GY+SLHTAV GP+G LEVQIRT MHE AE G+ AH
Sbjct: 306 IVHTLWRHIPKEFDDYIANPKENGYRSLHTAVLGPEGKVLEVQIRTLAMHEEAELGVCAH 365
Query: 296 WLYKET 301
W YK T
Sbjct: 366 WRYKGT 371
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 27/150 (18%)
Query: 450 IQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLR 509
+QI L EE+E ++G V+S SSD K+ LR +L
Sbjct: 347 VQIRTLAMHEEAELGVCAHWRYKGTDVNS-----SSDHY---------EEKIAWLRQVLE 392
Query: 510 WEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV-- 567
W E+L +GG A+ + P V + P+G + L G+T D A +V
Sbjct: 393 WHEEL--------GDIGGLADQLRVDIEPDRVYVFT-PDGHAIDLPKGATPLDFAYRVHT 443
Query: 568 --GLEGKLVLVNGQLVLPNTELKDGDIVEV 595
G + VNG++V N L+ G+ VE+
Sbjct: 444 EIGHNCRGAKVNGRIVPLNYSLQTGEQVEI 473
>gi|188990613|ref|YP_001902623.1| GTP diphosphokinase [Xanthomonas campestris pv. campestris str.
B100]
gi|167732373|emb|CAP50565.1| GTP diphosphokinase [Xanthomonas campestris pv. campestris]
Length = 770
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 284 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 334
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 335 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 394
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 395 WKYKEGGK 402
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W +K ELEDL F L+P +R++ D+ R R Y
Sbjct: 212 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRIARDVDETRVARER--YI 269
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ +S+ + +D + +H+ S+ + + + + FD L D R + D+
Sbjct: 270 EAVKRTLSAALAQQGLRAD---VSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDDV 326
Query: 134 A 134
A
Sbjct: 327 A 327
>gi|168004491|ref|XP_001754945.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694049|gb|EDQ80399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 573
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 19/162 (11%)
Query: 150 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 208
G+ ++S+ ++AL E G++ V LS R K+LYSI+ KM +K ++ D
Sbjct: 239 GLVMSSIRDLDDALRNE---------GVQFVDLSGRPKNLYSIYKKMMKKKRTPEEILDV 289
Query: 209 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 268
R LR++V D+N CY L IVH+LW + G+ DYI + KP+GY+SLHT V
Sbjct: 290 RGLRLIVSDENN---------CYEALQIVHKLWKQVPGKSKDYIAHSKPNGYKSLHTVVI 340
Query: 269 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 310
G DG LEVQIRT KMH AE+GLAAHW YKE + + SS
Sbjct: 341 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNTQHSAFSS 382
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
ALP K +A ETL I+ LA+RLG+W+ KAELEDLCF L+P + DL++ S
Sbjct: 179 ALPYLKQIGIANETLEIFAPLANRLGIWSWKAELEDLCFKCLKPVEHQ----DLSARLSE 234
Query: 68 RNRVG 72
R R G
Sbjct: 235 RCREG 239
>gi|384428927|ref|YP_005638287.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas campestris pv. raphani 756C]
gi|341938030|gb|AEL08169.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) [Xanthomonas campestris pv. raphani 756C]
Length = 719
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + ++YD RA+RV+V D + CY+ L
Sbjct: 233 GLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDD---------VAACYAALG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ EFDDYI PK + Y+SLHTAV GP+G +E+QIRT +MH AE G+AAH
Sbjct: 284 AVHALWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRTIEIQIRTHEMHAQAELGVAAH 343
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 344 WKYKEGGK 351
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
RA+AQ T I LA+RLG+W +K ELEDL F L+P +R++ D+ R R Y
Sbjct: 161 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRIARDVDETRVARER--YI 218
Query: 75 RRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRRKRTKFLHDL 133
+ +S+ + +D + +H+ S+ + + + + FD L D R + D+
Sbjct: 219 EAVKRTLSAALAQQGLRAD---VSGRPKHIYSIWRKMQKKRLSFDQLYDVRAVRVMVDDV 275
Query: 134 A 134
A
Sbjct: 276 A 276
>gi|424776494|ref|ZP_18203475.1| GTP pyrophosphokinase [Alcaligenes sp. HPC1271]
gi|422888314|gb|EKU30703.1| GTP pyrophosphokinase [Alcaligenes sp. HPC1271]
Length = 756
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K ++SI++KMR K + +++D RALRV+V D+ + CY L +VH L
Sbjct: 244 VSGRPKHIFSIWNKMRNKHLDFDQLFDLRALRVIVDDE---------RSCYHTLAVVHSL 294
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ EFDDYI PKP+GY+SLHT + G E+QIRT+ MH++AE+G+AAHW YKE
Sbjct: 295 WTPVPEEFDDYISRPKPNGYRSLHTVIADAQGRCYEIQIRTRDMHQFAEYGMAAHWRYKE 354
Query: 301 TGNK 304
G +
Sbjct: 355 AGAQ 358
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A+ETL ++ LA+RLG+W +K E+EDL F L P++++ + + L
Sbjct: 170 ARETLELYTPLANRLGIWQIKWEMEDLAFRFLNPEVYKNIASKL 213
>gi|58581359|ref|YP_200375.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|58425953|gb|AAW74990.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
Length = 765
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 258 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 317
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 318 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 368
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 369 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 397
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+AQ T I LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 208 ALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 249
>gi|289662001|ref|ZP_06483582.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 719
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLGAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 351
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 161 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|296135844|ref|YP_003643086.1| (p)ppGpp synthetase I SpoT/RelA [Thiomonas intermedia K12]
gi|295795966|gb|ADG30756.1| (p)ppGpp synthetase I, SpoT/RelA [Thiomonas intermedia K12]
Length = 738
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM+ K + +V D RALR++VGD + CY+ L +VH +W
Sbjct: 243 RPKHIYSIWRKMQGKHLQFEQVMDLRALRIIVGD---------VSACYAALSVVHAMWAS 293
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+ GEFDDYI PKP+GYQSLHT V+ G E+QIRT MH +AE G AAHW YKE G
Sbjct: 294 LPGEFDDYIAKPKPNGYQSLHTVVRTDSGQIFEIQIRTAAMHAHAEQGSAAHWAYKEAGA 353
Query: 304 K 304
K
Sbjct: 354 K 354
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 20 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 79
E++ ++ LA+RLG+W +K E+EDL F ++QP++++ D+A R RV + I+T
Sbjct: 168 ESMEVYAPLANRLGIWQVKWEMEDLSFRLMQPEVYK----DIARKLDER-RVEREQGIST 222
Query: 80 IVS 82
+S
Sbjct: 223 AIS 225
>gi|456063168|ref|YP_007502138.1| (P)ppGpp synthetase I, SpoT/RelA [beta proteobacterium CB]
gi|455440465|gb|AGG33403.1| (P)ppGpp synthetase I, SpoT/RelA [beta proteobacterium CB]
Length = 679
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 86/132 (65%), Gaps = 12/132 (9%)
Query: 169 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 228
++ ++I G + R K +YSI+ KM+ K + +YD RA RV+V D ++
Sbjct: 204 LTAAHIQG---EVQGRPKHIYSIWKKMQGKSLDFANLYDVRAFRVLVDD---------VK 251
Query: 229 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 288
CY++L IVH +W P+ EFDDYI PKP+GYQSLHT V G+A E+Q+RT +MH+ A
Sbjct: 252 SCYAILGIVHNVWQPVPREFDDYIARPKPNGYQSLHTVVMDEHGTAFEIQVRTNEMHQQA 311
Query: 289 EHGLAAHWLYKE 300
E+GLAAHW YKE
Sbjct: 312 EYGLAAHWRYKE 323
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
+A AQE L I SLA+RLG+W +K E+EDL F VL P+I+R D+A M + R+
Sbjct: 136 KAWAQEILNIDASLANRLGIWQMKWEMEDLAFRVLSPEIYR----DIAKMLDGK-RIERE 190
Query: 75 RRITTIVS 82
I IVS
Sbjct: 191 SFIEQIVS 198
>gi|289667030|ref|ZP_06488105.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 719
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLGAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 351
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 161 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|40063134|gb|AAR37981.1| GTP pyrophosphokinase [uncultured marine bacterium 561]
Length = 744
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM+RK +G +V+D RALR++V D + CY L +VH +
Sbjct: 261 ITGRAKHIYSIWRKMQRKGIGFSQVHDIRALRILVDD---------VAACYQTLGVVHGM 311
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AHW YK
Sbjct: 312 WRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTEEMHEEAELGVCAHWRYKA 371
Query: 301 T 301
+
Sbjct: 372 S 372
>gi|406942692|gb|EKD74870.1| hypothetical protein ACD_44C00312G0002 [uncultured bacterium]
Length = 728
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM+RK VG ++YD A+RV+V ++ CY +L +VH L
Sbjct: 249 ISGRAKHIYSIYRKMKRKSVGYEEIYDVSAVRVLVD---------TVEQCYQVLSVVHHL 299
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI +PK +GY SLHTAV GP +EVQIRT +MH +E G+AAHW+YKE
Sbjct: 300 WEPIAKEFDDYIAHPKANGYASLHTAVLGPQKRNVEVQIRTIEMHNVSELGVAAHWMYKE 359
Query: 301 TGNK 304
+
Sbjct: 360 GATR 363
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 2 VFEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
V ++ L + + +A E + I+ LA+RLGL LK ELEDL F L+PQ ++K L
Sbjct: 158 VLRYASTLNKVEQQKIAHEVMDIYSPLANRLGLGQLKWELEDLSFRYLEPQTYKK----L 213
Query: 62 ASMWSPR--NRVGYSRRITTIV 81
A + R +R Y + + +++
Sbjct: 214 AKLLDARRLDRENYIQDVISVI 235
>gi|119503992|ref|ZP_01626073.1| RelA/SpoT protein [marine gamma proteobacterium HTCC2080]
gi|119459995|gb|EAW41089.1| RelA/SpoT protein [marine gamma proteobacterium HTCC2080]
Length = 744
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM+RK +G +V+D RALR++V D + CY L +VH +
Sbjct: 261 ITGRAKHIYSIWRKMQRKGIGFSQVHDIRALRILVDD---------VAACYQTLGVVHGM 311
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W I EFDDYI +PK +GY+SLHTAV GP+G LEVQIRT++MHE AE G+ AHW YK
Sbjct: 312 WRNIPNEFDDYIASPKENGYRSLHTAVIGPEGKILEVQIRTEEMHEEAELGVCAHWRYKA 371
Query: 301 T 301
+
Sbjct: 372 S 372
>gi|127512134|ref|YP_001093331.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella loihica PV-4]
gi|126637429|gb|ABO23072.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella loihica PV-4]
Length = 734
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KMR KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWKKMRGKDLTFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 HIPKEFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKEGT 360
Query: 303 NKLQS 307
QS
Sbjct: 361 TGKQS 365
>gi|146328161|emb|CAM58078.1| hypothetical protein [uncultured marine microorganism]
Length = 587
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 86/127 (67%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK ++ ++D RA+R++V D + CYS L
Sbjct: 105 GVKADISGRPKHIYSIWRKMQRKGSDLNHIFDVRAVRLLVDD---------VSECYSALG 155
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW + GEF+DYI NPK + Y+SLHTAV GP+G +EVQIRT +MH AE G+AAH
Sbjct: 156 VVHNLWSYLPGEFNDYIANPKENDYRSLHTAVIGPEGRTVEVQIRTHEMHRQAELGVAAH 215
Query: 296 WLYKETG 302
W YKE G
Sbjct: 216 WRYKEGG 222
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + +A+A ET I+ +LA+RLG+W LK ELEDL F + P ++++
Sbjct: 28 PKNEQQALAIETREIYAALANRLGVWQLKWELEDLAFRYIDPDTYKQI 75
>gi|238926103|ref|ZP_04657863.1| GTP diphosphokinase [Selenomonas flueggei ATCC 43531]
gi|238885993|gb|EEQ49631.1| GTP diphosphokinase [Selenomonas flueggei ATCC 43531]
Length = 739
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 18/158 (11%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ KM+R + I+++YD A+RV+V ++ CY +L
Sbjct: 234 GIEAEIKGRAKHFYSIYRKMKRDNKSINEIYDLSAVRVLVS---------TVKDCYGVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PK +GYQSLHT V +G LE+QIRT+ MH+ +E G+AAH
Sbjct: 285 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TEGDPLEIQIRTKAMHQISEFGIAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 328
W YKE G +S+ + DE+D + S SL K+ DD
Sbjct: 344 WKYKEAG---RSVGAGDENDQKMSWLRQMVSLQKEYDD 378
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
K + +A+ETL ++ LA+RLG+ +KAELEDLC L+P+ +
Sbjct: 160 KRQRIARETLEVYAPLANRLGISGIKAELEDLCLRYLEPEAY 201
>gi|410693584|ref|YP_003624205.1| putative (P)ppGpp synthetase I, SpoT/RelA [Thiomonas sp. 3As]
gi|294340008|emb|CAZ88372.1| putative (P)ppGpp synthetase I, SpoT/RelA [Thiomonas sp. 3As]
Length = 738
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 77/121 (63%), Gaps = 9/121 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM+ K + +V D RALR++VGD + CY+ L +VH +W
Sbjct: 243 RPKHIYSIWRKMQGKHLQFEQVMDLRALRIIVGD---------VSACYAALSVVHAMWAA 293
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+ GEFDDYI PKP+GYQSLHT V+ G E+QIRT MH +AE G AAHW YKE G
Sbjct: 294 LPGEFDDYIAKPKPNGYQSLHTVVRTDSGQIFEIQIRTAAMHAHAEQGSAAHWAYKEAGA 353
Query: 304 K 304
K
Sbjct: 354 K 354
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 20 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITT 79
E++ ++ LA+RLG+W +K E+EDL F ++QP++++ D+A R R+ + I+T
Sbjct: 168 ESMEVYAPLANRLGIWQVKWEMEDLSFRLMQPEVYK----DIARKLDER-RIEREQGIST 222
Query: 80 IVS 82
+S
Sbjct: 223 AIS 225
>gi|414870236|tpg|DAA48793.1| TPA: hypothetical protein ZEAMMB73_708443 [Zea mays]
Length = 713
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 136/306 (44%), Gaps = 99/306 (32%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
ALP K + A+ET+ I+ LA+RLG+ + K LE++CF L P+ +++ + L
Sbjct: 350 ALPLVKQQRFAKETMEIFVPLANRLGIASWKDHLENICFKHLNPEEHKELSSKL------ 403
Query: 68 RNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRT 127
+FDE +L T
Sbjct: 404 -----------------------------LMSFDEALL---------------------T 413
Query: 128 KFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKS 187
LH+L KS ++D GI+ SL S R KS
Sbjct: 414 STLHNLDKS---------LRDEGISYHSL-------------------------SGRHKS 439
Query: 188 LYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGE 247
LYSI+SKM +K++ + V+D LR+VV + CY LDIVH+LW + G
Sbjct: 440 LYSIYSKMIKKNLTMDDVHDIHGLRLVVETEED---------CYRALDIVHKLWPRVTGR 490
Query: 248 FDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 307
F DYI +PK +GY+SLHT + E+QIRT++MH AE+G AAHW YKE G +
Sbjct: 491 FKDYICHPKLNGYRSLHTVIMCEGVHPFEIQIRTKEMHLQAEYGFAAHWRYKEGGCRHSF 550
Query: 308 ISSMDE 313
+ M E
Sbjct: 551 VLQMVE 556
>gi|304436591|ref|ZP_07396560.1| GTP diphosphokinase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370287|gb|EFM23943.1| GTP diphosphokinase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 739
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 18/158 (11%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ KM+R + I+++YD A+RV+V ++ CY +L
Sbjct: 234 GIEAEIKGRAKHFYSIYRKMKRDNKSINEIYDLSAVRVLVS---------TVKDCYGVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PK +GYQSLHT V +G LE+QIRT+ MH+ +E G+AAH
Sbjct: 285 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TEGDPLEIQIRTKAMHQISEFGIAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 328
W YKE G +S+ + DE+D + S SL K+ DD
Sbjct: 344 WKYKEAG---RSVGAGDENDQKMSWLRQMVSLQKEYDD 378
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
K + +A+ETL ++ LA+RLG+ +KAELEDLC L+P+ +
Sbjct: 160 KRQRIARETLEVYAPLANRLGISGIKAELEDLCLRYLEPEAY 201
>gi|347538471|ref|YP_004845895.1| (p)ppGpp synthetase I SpoT/RelA [Pseudogulbenkiania sp. NH8B]
gi|345641648|dbj|BAK75481.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudogulbenkiania sp. NH8B]
Length = 733
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 87/122 (71%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KMR+K++ ++YD RA+RV+V +++ CY++L ++H +
Sbjct: 257 VAGRPKHIYSIWKKMRKKNLDFSELYDIRAVRVLV---------ESVKDCYTVLGLIHSM 307
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ GEFDDYI +PK + Y+SLHTAV GP+ +EVQIRT MHE+AE G+AAHW YKE
Sbjct: 308 WQPVPGEFDDYISHPKANDYRSLHTAVIGPEDRVIEVQIRTFDMHEHAEFGVAAHWRYKE 367
Query: 301 TG 302
G
Sbjct: 368 GG 369
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P A R +AQET+ ++ LA+RLG+W +K ELEDL F ++P+ ++K+
Sbjct: 175 PEAVRRTIAQETMDVFAPLANRLGVWQIKWELEDLAFRHIEPENYKKI 222
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 494 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 553
+A+ K+ LR +L W E++ + L + + + + + V PNG ++
Sbjct: 372 DAAYEEKISWLRQLLDWREEVSDRSGLTDAF---------KTELFSDTIYVLTPNGRVLA 422
Query: 554 LRSGSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEV 595
L SG+TA D A + G + V GQ+V +T L++G VE+
Sbjct: 423 LPSGATAIDFAYAIHTDLGHRCRGAKVEGQIVPLSTPLQNGQRVEI 468
>gi|418516885|ref|ZP_13083055.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410706482|gb|EKQ64942.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 723
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 216 VARERYLEAVKRTLSAALVQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 275
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 276 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 326
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 327 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 355
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 165 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 207
>gi|114320256|ref|YP_741939.1| (p)ppGpp synthetase I SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
gi|114226650|gb|ABI56449.1| (p)ppGpp synthetase I, SpoT/RelA [Alkalilimnicola ehrlichii MLHE-1]
Length = 735
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM+RK + ++YD RALRV+V D + CY++L
Sbjct: 247 GIDAEVVGRPKHIYSIWRKMQRKGLRFEELYDLRALRVLVED---------VGTCYAVLG 297
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI PK + Y+SLHTAV GP+G LEVQIRT MH+ AE G+AAH
Sbjct: 298 VVHSLWKHIPKEFDDYIATPKENNYRSLHTAVVGPEGKTLEVQIRTYAMHQEAELGIAAH 357
Query: 296 WLYKETGNK 304
W YKE G +
Sbjct: 358 WRYKEGGRQ 366
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
LP + +AQET I+ LA+RLG+W LK ELEDL F LQP +++++ LA
Sbjct: 169 LPETLQQRIAQETRDIYAPLANRLGIWQLKWELEDLAFRYLQPDVYKQVAKLLA 222
>gi|390989283|ref|ZP_10259582.1| RelA/SpoT family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|372556041|emb|CCF66557.1| RelA/SpoT family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
Length = 719
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALVQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 161 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|29654672|ref|NP_820364.1| RelA/SpoT family protein [Coxiella burnetii RSA 493]
gi|161831132|ref|YP_001597218.1| RelA/SpoT family protein [Coxiella burnetii RSA 331]
gi|29541940|gb|AAO90878.1| GTP pyrophosphokinase [Coxiella burnetii RSA 493]
gi|161762999|gb|ABX78641.1| RelA/SpoT family protein [Coxiella burnetii RSA 331]
Length = 714
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNIEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 300 ETGNKLQS 307
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 560 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGARVNGKMVPLTRTLKTGDCVEI 445
>gi|218296101|ref|ZP_03496870.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23]
gi|218243478|gb|EED10007.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus aquaticus Y51MC23]
Length = 726
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 97/150 (64%), Gaps = 7/150 (4%)
Query: 155 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
++ EEAL+++ L+ S + G EVT R K LYSI+ KM R+ + ++YD A+RV+
Sbjct: 222 AMEVLEEALKQDALLQ-SQLQGFEVT--GRPKHLYSIWKKMEREGKALEQIYDLLAVRVI 278
Query: 215 VGDK-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP 270
+ K + T + Q CY +L +VH LW PI G DYI PKP+GYQSLHT V
Sbjct: 279 LDPKPSPTEEAKGLREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAL 338
Query: 271 DGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 339 EGLPLEVQIRTREMHRIAEYGIAAHWLYKE 368
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+P K + +AQETL I+ LA RLG+ +K ELEDL F L P+ ++ + A L R
Sbjct: 156 MPEGKQKRIAQETLEIYAPLAHRLGMGQIKWELEDLSFRYLHPEAYQALLARLQETQEAR 215
Query: 69 NRV 71
R+
Sbjct: 216 ERM 218
>gi|212702010|ref|ZP_03310138.1| hypothetical protein DESPIG_00012 [Desulfovibrio piger ATCC 29098]
gi|212674525|gb|EEB35008.1| RelA/SpoT family protein [Desulfovibrio piger ATCC 29098]
Length = 719
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 92/141 (65%), Gaps = 13/141 (9%)
Query: 162 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 221
+L ++LL S G+E + R+K YSI+ KM+ + + + +++D A RV+V D
Sbjct: 218 SLIQDLLASN----GLEGQVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---- 269
Query: 222 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRT 281
I+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT
Sbjct: 270 -----IRDCYAVLGLVHSQWKPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRT 324
Query: 282 QKMHEYAEHGLAAHWLYKETG 302
++MH AEHG+AAHWLYKE G
Sbjct: 325 EEMHRQAEHGVAAHWLYKEKG 345
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P K R +AQET+ I+ LA+RLGL+ LK +LEDL F L+P I+ ++
Sbjct: 152 PHKQRRIAQETMDIYAPLANRLGLYLLKRQLEDLSFKYLRPDIYNQI 198
>gi|411116988|ref|ZP_11389475.1| (p)ppGpp synthetase, RelA/SpoT family [Oscillatoriales
cyanobacterium JSC-12]
gi|410713091|gb|EKQ70592.1| (p)ppGpp synthetase, RelA/SpoT family [Oscillatoriales
cyanobacterium JSC-12]
Length = 751
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K LY I+ KM+R+ G ++YD A+R++V D N + CY L IVH +
Sbjct: 255 ISGRPKHLYGIYQKMQRQQKGYEEIYDVAAVRIIV-DSN--------EECYRSLAIVHDM 305
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTVVIGNTGRPLEVQIRTLEMHHVAEYGIAAHWKYKE 365
Query: 301 TGNKLQSISSMDE 313
TGN ++ MDE
Sbjct: 366 TGNSSTPLTGMDE 378
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP AK R +A ET I+ LA+RLG+ K ELEDL F L+P +R ++ +A
Sbjct: 171 LPDAKRRQIALETREIFAPLANRLGIGRFKWELEDLAFKYLEPDAYRNVQELVAE----- 225
Query: 69 NRVGYSRRITTIVSS 83
R R++ IVS+
Sbjct: 226 KRTDREARLSNIVSA 240
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 496 SINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLR 555
++ K LR +L W+ L+ +S D + GEV + PNG+++ L
Sbjct: 375 GMDEKFTWLRQLLDWQSDLKDAQEYLESI--------KDDLFDGEVYVFT-PNGDVVSLS 425
Query: 556 SGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
G+T D A + VG VNG++ +T LK+GDIVE+
Sbjct: 426 RGATPVDFAYRIHTEVGNHCAGARVNGRMATLDTALKNGDIVEI 469
>gi|307610160|emb|CBW99708.1| GTP pyrophosphokinase [Legionella pneumophila 130b]
Length = 734
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 82/118 (69%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K ++SI+ KM+RK+V + ++YDA A+R+++ + CY +L +VH LW
Sbjct: 256 GRSKHIHSIYKKMKRKNVSLDEIYDATAVRILLDTE---------AQCYEVLGMVHTLWK 306
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDYI+NPK +GYQSLHTAV+GP+G EVQIRT MH+ AE G+AAHW YKE
Sbjct: 307 QIPAEFDDYIINPKSNGYQSLHTAVEGPEGRVFEVQIRTFHMHDLAEMGVAAHWKYKE 364
>gi|21243840|ref|NP_643422.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv. citri
str. 306]
gi|21109438|gb|AAM37958.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 727
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 359
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 169 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 211
>gi|418521587|ref|ZP_13087630.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410702432|gb|EKQ60938.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 727
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 330
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 359
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 169 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 211
>gi|350552242|ref|ZP_08921447.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodospira sibirica ATCC
700588]
gi|349794895|gb|EGZ48703.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodospira sibirica ATCC
700588]
Length = 726
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 98/164 (59%), Gaps = 15/164 (9%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
+ + R K +YSI+ KM++K + +VYD RA+RV+V I CY+ L +V
Sbjct: 243 QAEVRGRPKHIYSIWRKMQKKQLDFEEVYDLRAVRVIV---------ERISSCYTALGVV 293
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H LW I EFDDYI NPK +GYQSLHTAV GP +EVQIRT+ M E+AE G+AAHW
Sbjct: 294 HSLWPHIPREFDDYIANPKDNGYQSLHTAVIGPQAKVVEVQIRTRDMDEFAELGVAAHWR 353
Query: 298 YKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD---TDLFQ 338
YKE G + ++++ S L DD+ LD ++LFQ
Sbjct: 354 YKEGGTEDKALTRAIAS---LRRLLDNKEDDNELLDSFRSELFQ 394
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
A P + A A+ETL I+ LA+RLG+ LK E+EDL F +L+P+ +R++ L
Sbjct: 161 AHPDSTTLAYARETLDIFSPLANRLGIGQLKWEMEDLAFRILEPEEYRRLACLLEE---- 216
Query: 68 RNRVGYSRRI 77
NR G R I
Sbjct: 217 -NRTGRERYI 225
>gi|297564854|ref|YP_003683826.1| (p)ppGpp synthetase I SpoT/RelA [Meiothermus silvanus DSM 9946]
gi|296849303|gb|ADH62318.1| (p)ppGpp synthetase I, SpoT/RelA [Meiothermus silvanus DSM 9946]
Length = 738
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 105/175 (60%), Gaps = 14/175 (8%)
Query: 158 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 217
A E L+++ ++ S I G EVT R K LYSI+ KM+R+ + ++YD ALRV++
Sbjct: 236 ALEAVLQRDSVLGAS-IQGYEVT--GRTKHLYSIWKKMQREGRALEQIYDLLALRVILEP 292
Query: 218 K-NGTLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 273
+ L A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V G
Sbjct: 293 RPTPNLEEKAMREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIAGSGL 352
Query: 274 ALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSISSMDESDIEASSS 321
LEVQIRT++MH+ AE+G+AAHWLYK E ++ + S+ E E SSS
Sbjct: 353 PLEVQIRTREMHQIAEYGIAAHWLYKQGLTDPEEIKRRVDWLRSIQEWQAEFSSS 407
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K +A+ETL I+ LA RLG+ +K ELEDL F L+P+ + + L S + R
Sbjct: 167 MPPHKQTRIARETLEIYAPLAHRLGIGQIKWELEDLSFRYLEPEAYADLLGRLKSHRAER 226
Query: 69 N 69
Sbjct: 227 E 227
>gi|226311469|ref|YP_002771363.1| GTP pyrophosphokinase [Brevibacillus brevis NBRC 100599]
gi|226094417|dbj|BAH42859.1| GTP pyrophosphokinase [Brevibacillus brevis NBRC 100599]
Length = 723
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E +S R K +YSIF KM R++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTRQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 296 WLYKETGNKLQ 306
W YKE + +Q
Sbjct: 340 WAYKEGKSIVQ 350
>gi|294667037|ref|ZP_06732264.1| ATP:GTP 3-pyrophosphotransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603194|gb|EFF46618.1| ATP:GTP 3-pyrophosphotransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 811
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 304 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 363
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 364 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 414
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 415 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 443
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 253 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 295
>gi|294626832|ref|ZP_06705424.1| Guanosine 3,5-bis-pyrophosphate synthetase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292598846|gb|EFF42991.1| Guanosine 3,5-bis-pyrophosphate synthetase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
Length = 719
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 161 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|398813763|ref|ZP_10572455.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. BC25]
gi|398038063|gb|EJL31236.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. BC25]
Length = 723
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E +S R K +YSIF KM R++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTRQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 296 WLYKETGNKLQ 306
W YKE + +Q
Sbjct: 340 WAYKEGKSIVQ 350
>gi|344340006|ref|ZP_08770933.1| (p)ppGpp synthetase I, SpoT/RelA [Thiocapsa marina 5811]
gi|343800185|gb|EGV18132.1| (p)ppGpp synthetase I, SpoT/RelA [Thiocapsa marina 5811]
Length = 737
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E ++ R K +YSI+ KM+RK+V I +++D RA+R++VG ++ CY+ L
Sbjct: 249 GIEAEITGRPKHIYSIWRKMQRKEVEIAEIFDLRAVRILVG---------SVADCYAALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI PK + Y+SLHTAV GP+ LEVQIRT +MH++AE G+AAH
Sbjct: 300 LVHGLWKHIPKEFDDYIATPKGNMYRSLHTAVVGPEDKPLEVQIRTHEMHQHAEFGVAAH 359
Query: 296 WLYKET 301
W YKE+
Sbjct: 360 WAYKES 365
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P + +A++T I+ LA+RLG+W +K ELEDL L P+ ++++ LA R
Sbjct: 171 LEPERRAKIARDTQRIYAPLANRLGIWQVKWELEDLSLRYLNPEEYKRIAKLLAERREER 230
>gi|406915367|gb|EKD54454.1| hypothetical protein ACD_60C00079G0007 [uncultured bacterium]
Length = 680
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ K +K++ +YD A+R++V P +Q CY L
Sbjct: 245 GIKADIAGRAKHIYSIYLKSLKKNLNYRDIYDCSAVRILV---------PTVQDCYLALS 295
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH+++ + EFDDYI +PK +GY+S+HTAV G DG LEVQIRT +MHE+AEHG+AAH
Sbjct: 296 IVHQIFEHLTEEFDDYISHPKQNGYRSIHTAVIGSDGKYLEVQIRTPEMHEFAEHGVAAH 355
Query: 296 WLYKET 301
W+YKET
Sbjct: 356 WVYKET 361
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
P + + +A+ET+ I+ LA+RLG+ LK ELED F L P ++ + LA R
Sbjct: 169 PRERKRIAEETMDIYAPLANRLGIGQLKWELEDHAFHYLDPDTYKTIADFLAE-----RR 223
Query: 71 VGYSRRITT 79
+ RI T
Sbjct: 224 IDREERIQT 232
>gi|381169784|ref|ZP_09878947.1| RelA/SpoT family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|380689802|emb|CCG35434.1| RelA/SpoT family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
Length = 719
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 212 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 271
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 272 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 322
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 323 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 351
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 161 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 203
>gi|153209488|ref|ZP_01947403.1| RelA/SpoT family protein [Coxiella burnetii 'MSU Goat Q177']
gi|212218778|ref|YP_002305565.1| GTP pyrophosphokinase [Coxiella burnetii CbuK_Q154]
gi|120575341|gb|EAX31965.1| RelA/SpoT family protein [Coxiella burnetii 'MSU Goat Q177']
gi|212013040|gb|ACJ20420.1| GTP pyrophosphokinase [Coxiella burnetii CbuK_Q154]
Length = 714
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 300 ETGNKLQS 307
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 560 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGTRVNGKMVPLTRTLKTGDCVEI 445
>gi|165923932|ref|ZP_02219764.1| RelA/SpoT family protein [Coxiella burnetii Q321]
gi|165916624|gb|EDR35228.1| RelA/SpoT family protein [Coxiella burnetii Q321]
Length = 714
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 300 ETGNKLQS 307
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 560 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGTRVNGKMVPLTRTLKTGDCVEI 445
>gi|212212252|ref|YP_002303188.1| GTP pyrophosphokinase [Coxiella burnetii CbuG_Q212]
gi|212010662|gb|ACJ18043.1| GTP pyrophosphokinase [Coxiella burnetii CbuG_Q212]
Length = 714
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 300 ETGNKLQS 307
E G K+ S
Sbjct: 349 E-GKKVAS 355
>gi|154706244|ref|YP_001424809.1| GTP pyrophosphokinase [Coxiella burnetii Dugway 5J108-111]
gi|154355530|gb|ABS76992.1| GTP pyrophosphokinase [Coxiella burnetii Dugway 5J108-111]
Length = 714
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 86/128 (67%), Gaps = 10/128 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
+S R K +YSIF K++RK V ++YD A+R++V +++ CY+ L IVH
Sbjct: 238 NISGRAKHIYSIFRKIQRKQVDFSEIYDTSAVRILVS---------SLEDCYTALSIVHA 288
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
LW PI EFDDYI PK +GY+S+HTAV GP+G +E+QIRT MHE AE G+AAHW YK
Sbjct: 289 LWEPIAKEFDDYIAKPKDNGYRSIHTAVIGPEGHNVEIQIRTYGMHEEAELGVAAHWKYK 348
Query: 300 ETGNKLQS 307
E G K+ S
Sbjct: 349 E-GKKVAS 355
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
K+ LR ++ W++++ + RQ + + + V PNG+++ L +G+T
Sbjct: 360 KINWLREVMDWQKEVSPDVKWRQ--------------IFEDHIYVFTPNGDVIDLEAGAT 405
Query: 560 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
D A + +G + VNG++V LK GD VE+
Sbjct: 406 PLDFAYRIHTEIGHRCRGARVNGKMVPLTRTLKTGDCVEI 445
>gi|78048800|ref|YP_364975.1| guanosine 3',5'-bis-pyrophosphate synthetase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78037230|emb|CAJ24975.1| Guanosine 3',5'-bis-pyrophosphate synthetase [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 723
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 216 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 275
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 276 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 326
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 327 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 355
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 165 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 207
>gi|381150377|ref|ZP_09862246.1| (p)ppGpp synthetase, RelA/SpoT family [Methylomicrobium album BG8]
gi|380882349|gb|EIC28226.1| (p)ppGpp synthetase, RelA/SpoT family [Methylomicrobium album BG8]
Length = 704
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 114/202 (56%), Gaps = 20/202 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM+RK + I +YD A+RV+V + + CY++L
Sbjct: 227 GITAEVYGRPKHIYSIWKKMQRKQLDIEDLYDLLAVRVIVTN---------LTQCYTVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI NPK +GYQSLHT + +G+ +EVQIRT++MHE+AE G+AAH
Sbjct: 278 LVHSLWQTIPKEFDDYIANPKENGYQSLHTVIVDNEGNRIEVQIRTREMHEFAEMGVAAH 337
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPL----DTDLFQK--YSSLKMGHPV 349
W YKE G ++ E +I + L ++ D+ L T+LF Y G +
Sbjct: 338 WSYKEGGRHNAAV----EKNIASLRKLLEEKDNDETLAEDFKTELFSDRVYVLTPAGKLI 393
Query: 350 IRVEGSNLL-AAVIIRVEKGGR 370
V+GS L A I E G R
Sbjct: 394 DLVKGSTPLDFAYAIHTEIGHR 415
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 6 SYALPPAKARA-VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S A P + R +A+ETL I+ LA+R+G+ K ELED+ F L+P +++ + LA
Sbjct: 145 SLAGEPEEVRHFIARETLDIYAPLANRMGIHQFKWELEDMAFRYLEPLVYKSIAKSLADK 204
Query: 65 WSPRNR 70
+ R R
Sbjct: 205 RTERER 210
>gi|257784325|ref|YP_003179542.1| (p)ppGpp synthetase I SpoT/RelA [Atopobium parvulum DSM 20469]
gi|257472832|gb|ACV50951.1| (p)ppGpp synthetase I, SpoT/RelA [Atopobium parvulum DSM 20469]
Length = 781
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 103/180 (57%), Gaps = 20/180 (11%)
Query: 138 EAQKKAKVVQDAGIAL-TSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMR 196
E Q+ A++V D+ L ++ L EL + + I ++T R K L+SI+ KM
Sbjct: 209 EYQRVARMVSDSRAQRENDLNNAKKTLTDEL--NAAGITDFQIT--GRPKHLWSIYQKMV 264
Query: 197 RKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIV 253
RK +YD ALRV+ VGD CYS L +H LW P+ G F DYI
Sbjct: 265 RKGREFSNIYDLIALRVITKNVGD------------CYSALGAIHALWHPMPGRFKDYIA 312
Query: 254 NPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 313
PK + YQSLHT V GPDG +E+QIRT +MHE +E+G+AAHWLYKE GN +SS D+
Sbjct: 313 TPKANLYQSLHTTVIGPDGRPIEIQIRTAEMHEASEYGIAAHWLYKEEGNSKGKMSSEDK 372
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
ALPP + A+ET+ ++ LA RLG+ ++K ELEDL F L+P+ ++++
Sbjct: 164 ALPPDRRLFKARETMDVYAPLADRLGISSVKWELEDLSFFWLEPEEYQRV 213
>gi|346725914|ref|YP_004852583.1| Guanosine polyphosphate pyrophosphohydrolase [Xanthomonas
axonopodis pv. citrumelo F1]
gi|346650661|gb|AEO43285.1| Guanosine polyphosphate pyrophosphohydrolase [Xanthomonas
axonopodis pv. citrumelo F1]
Length = 728
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 360
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 170 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 212
>gi|238022794|ref|ZP_04603220.1| hypothetical protein GCWU000324_02706 [Kingella oralis ATCC 51147]
gi|237865997|gb|EEP67133.1| hypothetical protein GCWU000324_02706 [Kingella oralis ATCC 51147]
Length = 730
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ KM +K + +YD RA+R++V I CY+ L
Sbjct: 246 GIQYDVAGRPKHIYSIYKKMVKKKLDFEGLYDIRAVRILVN---------TIPECYATLG 296
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H L+ PI GEFDDYI NPK +GY+SLHT + GP+ ++EVQIRT +MH++ E G+AAH
Sbjct: 297 IIHSLFQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKSIEVQIRTFEMHQFNEFGVAAH 356
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 357 WRYKEGGK 364
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 174 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQNPEEYKRI 216
>gi|325927559|ref|ZP_08188794.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas perforans
91-118]
gi|325542064|gb|EGD13571.1| (p)ppGpp synthetase, RelA/SpoT family [Xanthomonas perforans
91-118]
Length = 728
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 221 VARERYLEAVKRTLSAALAQQGLRAEVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 280
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV GP+G
Sbjct: 281 VED---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGPEGRT 331
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 332 IEIQIRTFEMHAQAELGVAAHWKYKEGGK 360
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W +K ELEDL F L+P+ +R++
Sbjct: 170 RALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPETYRRI 212
>gi|91775651|ref|YP_545407.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
gi|91709638|gb|ABE49566.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Methylobacillus flagellatus KT]
Length = 740
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI +KMRRK + +++YD RA+R++V D ++ CY++L
Sbjct: 258 GIQADMMGRPKHIYSIVNKMRRKQLSFNELYDVRAVRILVDD---------VKDCYAVLG 308
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H LW PI EFDDYI PK + Y+SLHT V GP LE+QIRT +MH ++E G+AAH
Sbjct: 309 LIHNLWQPIPKEFDDYIARPKSNNYRSLHTVVIGPRNLPLEIQIRTHEMHYHSELGVAAH 368
Query: 296 WLYKETG 302
W YKE G
Sbjct: 369 WRYKEGG 375
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+A+E I+ LA+RLG+W +K ELEDL L+P++++++ LA RVG +
Sbjct: 188 IAEEAKTIYAPLANRLGVWHIKWELEDLSLRFLEPKLYKEIAKLLAE-----KRVGREQY 242
Query: 77 ITTIV 81
I ++
Sbjct: 243 IKEVL 247
>gi|384107667|ref|ZP_10008565.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Treponema
sp. JC4]
gi|383870523|gb|EID86125.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Treponema
sp. JC4]
Length = 470
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ VT++SR K YSI+ KMR+++ ++YD ALR++ CY L+
Sbjct: 240 GISVTITSRAKHFYSIYQKMRKRNKSASELYDLLALRILCNSNAE---------CYQLVG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW+P+DG F DYI PK +GYQSLHT V +G LE+QIRT +MH AEHG+A+H
Sbjct: 291 IVHSLWLPMDGRFKDYIAVPKANGYQSLHTTVIC-EGKPLEIQIRTYEMHNMAEHGIASH 349
Query: 296 WLYKETGN 303
WLYK+ N
Sbjct: 350 WLYKKGTN 357
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
+L P + R +A+E + IW LA RLG+ K E EDL P+ + ++ A +A
Sbjct: 161 SLEPERQRILAEEIIDIWAPLADRLGMQTAKNEFEDLSLRYTNPKAYNQIEAIVA 215
>gi|354565208|ref|ZP_08984383.1| (p)ppGpp synthetase I, SpoT/RelA [Fischerella sp. JSC-11]
gi|353549167|gb|EHC18609.1| (p)ppGpp synthetase I, SpoT/RelA [Fischerella sp. JSC-11]
Length = 758
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K LYSI+ KM+R++ H++YD ALR++V + CY L +VH +
Sbjct: 256 ISGRPKHLYSIYQKMQRQNKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDV 306
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 307 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGPWGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 366
Query: 301 TGNKLQSISSMDE 313
TG +++ DE
Sbjct: 367 TGGSHTGLTASDE 379
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+P K R A ET I+ LA+RLG+W K ELEDL F L+P+ FR+++
Sbjct: 172 MPEEKRRRTATETREIFAPLANRLGIWRFKWELEDLAFKYLEPEAFRQIQ 221
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 491 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 550
T + AS + K LR +L W+ L+ +S D++ E + V P G+
Sbjct: 372 TGLTAS-DEKFTWLRQLLEWQSDLKDAQEYLESI--------KDNLFE-EDIYVFTPKGD 421
Query: 551 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
++ L+ GST D A + VG V VNG++V +T L++GDIVE+
Sbjct: 422 LVALKPGSTTVDFAYRIHTEVGNRCTGVRVNGRMVPLSTRLQNGDIVEI 470
>gi|374622074|ref|ZP_09694602.1| GTP diphosphokinase [Ectothiorhodospira sp. PHS-1]
gi|373941203|gb|EHQ51748.1| GTP diphosphokinase [Ectothiorhodospira sp. PHS-1]
Length = 723
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 17/166 (10%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K +YSI+ KM RK + +YD RA+RV+V DK T CY++L +
Sbjct: 238 VEGEVRGRPKHIYSIWKKMDRKQLEFQDLYDLRAVRVIV-DKVAT--------CYAVLGV 288
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH W I EFDDYI NPK +GYQSLHTAV GP+G +EVQIRT+ M +AE G+AAHW
Sbjct: 289 VHSRWPHIPKEFDDYIANPKDNGYQSLHTAVIGPNGKVVEVQIRTRDMDAFAELGVAAHW 348
Query: 297 LYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS 342
YKE G + Q++ + A +SL + +H D +L + + S
Sbjct: 349 RYKEGGREDQAL-------MRAIASLRR-LLEHQEDDRELLEDFRS 386
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 55
P A ARA A+ET I+ LA+RLG+ +K E+EDL F + P +R
Sbjct: 160 PDALARAYARETQEIFTPLANRLGVAQVKWEMEDLAFRIQDPDHYR 205
>gi|220904804|ref|YP_002480116.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869103|gb|ACL49438.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 719
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 13/140 (9%)
Query: 163 LEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTL 222
L K+LL S G+E + R+K YSI+ KM+ + + + +++D A RV+V D
Sbjct: 219 LIKDLLASN----GIEGQVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD----- 269
Query: 223 HGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQ 282
I+ CY+ L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+
Sbjct: 270 ----IRDCYAALGLVHSQWRPVHGRFKDYISMPKTNGYQSLHTTVIGPEGERIEIQIRTE 325
Query: 283 KMHEYAEHGLAAHWLYKETG 302
MH AEHG+AAHWLYKE G
Sbjct: 326 DMHRQAEHGVAAHWLYKEKG 345
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + +AQET+ I+ LA+RLGL+ +K LEDL F L+P IF ++
Sbjct: 154 KQKGIAQETMDIYAPLANRLGLYIMKRNLEDLSFKYLRPDIFNQI 198
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P G++ L G+T D A KVG +NG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFIIHTKVGQHCTGAKINGRLMPLSTELKNGDIVEI 444
>gi|254424339|ref|ZP_05038057.1| RelA/SpoT family protein [Synechococcus sp. PCC 7335]
gi|196191828|gb|EDX86792.1| RelA/SpoT family protein [Synechococcus sp. PCC 7335]
Length = 771
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+SSR K LYSI+ KM+R+ ++YD A+R++V K+ CY L + H L
Sbjct: 273 VSSRPKHLYSIYKKMQRQQKEFQEIYDIAAIRLLVNTKDE---------CYRALAVAHDL 323
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V GP G +EVQIRT +MH AE+G+AAHW YKE
Sbjct: 324 YRPIPGRFKDYIGLPKPNRYQSLHTVVMGPHGRPIEVQIRTVEMHHIAEYGIAAHWKYKE 383
Query: 301 TGNKLQSISSMDE 313
+GN +I+ DE
Sbjct: 384 SGNSHTTITQDDE 396
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
L P K +A+ETL I+ LA+RLG+ K ELEDLCF L+P+ ++++
Sbjct: 189 LRPDKQVRIARETLEIFAPLANRLGIGRFKWELEDLCFKYLEPEAYKEL 237
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 498 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 557
+ K LR +L W+ +L+ Q L N D E V PNG+++ L G
Sbjct: 395 DEKFTWLRQLLDWQNELKDA----QEYLSDVKNNLFD-----EEVYAFTPNGDVVPLSRG 445
Query: 558 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
+T D A + VG V+G++V NTEL++GDIVE+
Sbjct: 446 ATPVDFAYRIHTEVGNHCAGAKVSGRIVPLNTELQNGDIVEI 487
>gi|334127724|ref|ZP_08501627.1| GTP diphosphokinase [Centipeda periodontii DSM 2778]
gi|333388860|gb|EGK60030.1| GTP diphosphokinase [Centipeda periodontii DSM 2778]
Length = 743
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 18/160 (11%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+E + R K YSI+ KM+R + ++++YD A+RV+V +++ CY +
Sbjct: 233 VAGIEAEIKGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGV 283
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L ++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+A
Sbjct: 284 LGVIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTKAMHQVSEFGIA 342
Query: 294 AHWLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 328
AHW YKE G +SI + DE+D + S SL ++ DD
Sbjct: 343 AHWKYKEAG---RSIGATDENDQKMSWLRQMVSLQQEYDD 379
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
K +A+ETL ++ LA+RLG+ +K ELEDLC L+P+ +
Sbjct: 161 KRHRIAKETLEVYAPLANRLGISNIKVELEDLCLRYLEPEAY 202
>gi|345891626|ref|ZP_08842465.1| hypothetical protein HMPREF1022_01125 [Desulfovibrio sp.
6_1_46AFAA]
gi|345048010|gb|EGW51857.1| hypothetical protein HMPREF1022_01125 [Desulfovibrio sp.
6_1_46AFAA]
Length = 719
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 12/135 (8%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L+++++I G + R+K YSI+ KM+ + + + +++D A RV+V D I
Sbjct: 223 LLASNHIQG---QVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---------I 270
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+ MH
Sbjct: 271 KDCYAVLGLVHSQWRPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEDMHRQ 330
Query: 288 AEHGLAAHWLYKETG 302
AEHG+AAHWLYKE G
Sbjct: 331 AEHGVAAHWLYKEKG 345
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + +AQET+ I+ LA+RLGL+ LK LEDL F L+P +F ++
Sbjct: 154 KQKRIAQETMDIYAPLANRLGLYMLKRNLEDLSFKYLRPDVFNQI 198
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P G++ L G+T D A KVG VNG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFLIHTKVGQHCAGAKVNGRLMPLSTELKNGDIVEI 444
>gi|225593179|gb|ACN96096.1| (p)ppGpp synthetase I [Fischerella sp. MV11]
Length = 758
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K LYSI+ KM+R++ H++YD ALR++V + CY L +VH +
Sbjct: 255 ISGRPKHLYSIYQKMQRQNKEFHEIYDLAALRIIVQTN---------EECYRALAVVHDV 305
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 306 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGPWGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 365
Query: 301 TGNKLQSISSMDE 313
TG +++ DE
Sbjct: 366 TGGSHTGLTASDE 378
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+P K R A ET I+ LA+RLG+W K ELEDL F L+P+ FR+++
Sbjct: 171 MPDEKRRRTATETREIFAPLANRLGIWRFKWELEDLAFKYLEPEAFRQIQ 220
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 491 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 550
T + AS + K LR +L W+ L+ +S D++ E + V P G+
Sbjct: 371 TGLTAS-DEKFTWLRQLLEWQSDLKDAQEYLESI--------KDNLFE-EDIYVFTPKGD 420
Query: 551 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
++ L+ GST D A + VG V VNG++V +T L++GDIVE+
Sbjct: 421 LVALKPGSTTVDFAYRIHTEVGNRCTGVRVNGRMVPLSTRLQNGDIVEI 469
>gi|303327509|ref|ZP_07357950.1| GTP diphosphokinase [Desulfovibrio sp. 3_1_syn3]
gi|302862449|gb|EFL85382.1| GTP diphosphokinase [Desulfovibrio sp. 3_1_syn3]
Length = 719
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 12/135 (8%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L+++++I G + R+K YSI+ KM+ + + + +++D A RV+V D I
Sbjct: 223 LLASNHIQG---QVYGRIKHKYSIYKKMQSQSLTLDEMHDIMAFRVLVKD---------I 270
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT+ MH
Sbjct: 271 KDCYAVLGLVHSQWRPVHGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEDMHRQ 330
Query: 288 AEHGLAAHWLYKETG 302
AEHG+AAHWLYKE G
Sbjct: 331 AEHGVAAHWLYKEKG 345
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + +AQET+ I+ LA+RLGL+ LK LEDL F L+P +F ++
Sbjct: 154 KQKRIAQETMDIYAPLANRLGLYMLKRNLEDLSFKYLRPDVFNQI 198
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P G++ L G+T D A KVG VNG+L+ +TELK+GDIVE+
Sbjct: 387 VYVYTPAGDVKELPEGATPLDFAFLIHTKVGQHCAGAKVNGRLMPLSTELKNGDIVEI 444
>gi|270307456|ref|YP_003329514.1| relA/spoT protein, GTP pyrophosphokinase [Dehalococcoides sp. VS]
gi|270153348|gb|ACZ61186.1| relA/spoT protein, GTP pyrophosphokinase [Dehalococcoides sp. VS]
Length = 728
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 12/132 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 232
G++V LS R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 233 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 292
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 293 AAHWLYKETGNK 304
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
AL K R++A+ET+ I+ LA RLG+W LK +LEDL F L P+ +R++ + S +
Sbjct: 159 ALSAEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPRHYRQVANLVDSKLAQ 218
Query: 68 RNRVGYSRRITTIVSS 83
R Y ++ I+ S
Sbjct: 219 RK--NYIEHVSAILQS 232
>gi|406904851|gb|EKD46504.1| hypothetical protein ACD_67C00212G0005, partial [uncultured
bacterium]
Length = 382
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 179 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 238
+ + R KS+YS+F KM++ D+ I+++YD A+R++V P + CY L IVH
Sbjct: 120 IKIDGRAKSVYSLFLKMQKHDMDINQIYDLAAVRIIV---------PEVADCYETLGIVH 170
Query: 239 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 298
+ + P+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHW+Y
Sbjct: 171 KKYRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNEAEFGIAAHWIY 230
Query: 299 KETGNK 304
E+ K
Sbjct: 231 SESKKK 236
>gi|428221859|ref|YP_007106029.1| RelA/SpoT family (p)ppGpp synthetase [Synechococcus sp. PCC 7502]
gi|427995199|gb|AFY73894.1| (p)ppGpp synthetase, RelA/SpoT family [Synechococcus sp. PCC 7502]
Length = 752
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 21/175 (12%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
I G EVT R K LY I+ KM R+ ++YD A+RV+V + + CY +
Sbjct: 254 ITGFEVT--GRPKHLYGIYEKMHRQQKPYGEIYDIAAVRVIVNNTDE---------CYRI 302
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L I H + P+ G F DYI PKP+GYQSLHTAV PDG LEVQIRT +MH AE+G+A
Sbjct: 303 LAIAHDCFRPVPGRFKDYIALPKPNGYQSLHTAVISPDGQPLEVQIRTWEMHHVAEYGIA 362
Query: 294 AHWLYKETGNKLQSISSMDESD----------IEASSSLSKDTDDHNPLDTDLFQ 338
AHW YKE+ + S ++ +D +E+ + D + L DLF
Sbjct: 363 AHWKYKESNSNPNSNGGLNNNDSEKFNWLRQMVESQKDIKDDQEYIESLKQDLFN 417
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K +A+ET I+ LA+RLG+ K ELEDL F L+ + +R+M+A +A S R
Sbjct: 175 LAPHKQVLIARETRDIFAPLANRLGIGQFKWELEDLAFKYLEAEQYREMKALVAETRSDR 234
>gi|150390117|ref|YP_001320166.1| (p)ppGpp synthetase I SpoT/RelA [Alkaliphilus metalliredigens QYMF]
gi|149949979|gb|ABR48507.1| (p)ppGpp synthetase I, SpoT/RelA [Alkaliphilus metalliredigens
QYMF]
Length = 727
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 13/140 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K YSI+ KM ++ +++D A RV+V + ++ CY +L
Sbjct: 226 GIENEISGRPKHFYSIYRKMVYQNKSFDEIFDFIAFRVIVNN---------VKDCYGILG 276
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP+G E+QIRT++MH+ AE G+AAH
Sbjct: 277 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPNGEPFEIQIRTKEMHQIAEFGIAAH 336
Query: 296 WLYKETGNKLQSISSMDESD 315
W YKE +SI++ D+ D
Sbjct: 337 WSYKEG----KSINNEDDMD 352
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 494 EASINNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGEIM 552
E ++ K+ LR ML WE+ + S K+ N V V P GE++
Sbjct: 348 EDDMDTKLTWLRQMLEWEKDTKDPKEFMASLKVDLYTNE----------VFVFTPKGEVI 397
Query: 553 RLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
L SGST D A K VG + V+ ++V + +LK+G+IVE+
Sbjct: 398 NLPSGSTPIDFAYKIHSDVGNKCVGAKVDSRMVPIDYKLKNGNIVEI 444
>gi|350570797|ref|ZP_08939143.1| GTP diphosphokinase [Neisseria wadsworthii 9715]
gi|349794745|gb|EGZ48555.1| GTP diphosphokinase [Neisseria wadsworthii 9715]
Length = 736
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K +G +YD RA+R++V + CY+ L IVH L
Sbjct: 257 VAGRPKHIYSIYKKMVKKKLGFEGLYDIRAVRILVD---------TVPECYTTLGIVHSL 307
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI PK +GY+SLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPIPGEFDDYIAYPKANGYKSLHTVIVGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 301 TG 302
G
Sbjct: 368 GG 369
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K RA+A+ETL I+ LA+RLG+W LK +LEDL F P+ ++++
Sbjct: 178 KKRAIAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQDPEKYKEI 222
>gi|288942359|ref|YP_003444599.1| (p)ppGpp synthetase I SpoT/RelA [Allochromatium vinosum DSM 180]
gi|288897731|gb|ADC63567.1| (p)ppGpp synthetase I, SpoT/RelA [Allochromatium vinosum DSM 180]
Length = 743
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 85/126 (67%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KM+RK+V I ++D RA+R++V ++ CY+ L
Sbjct: 251 GIGAEITGRPKHIYSIWKKMQRKNVDIADIFDLRAVRILVD---------SVADCYAALG 301
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI PK + YQSLHTAV+GP+ ALEVQIRT MH++AE G+AAH
Sbjct: 302 VVHGLWRHIPKEFDDYIATPKGNFYQSLHTAVEGPEAKALEVQIRTHAMHQHAEFGVAAH 361
Query: 296 WLYKET 301
W YKE
Sbjct: 362 WAYKEA 367
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
L P + +A++T ++ LA+RLG+W +K ELEDL LQP+ +R++ LA
Sbjct: 173 LEPERRTKIARDTQRVYAPLANRLGIWQIKWELEDLSLRYLQPEEYRRIAKLLA 226
>gi|57233675|ref|YP_180760.1| GTP pyrophosphokinase [Dehalococcoides ethenogenes 195]
gi|57224123|gb|AAW39180.1| GTP pyrophosphokinase [Dehalococcoides ethenogenes 195]
Length = 728
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 12/132 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 232
G++V LS R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLKVELSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 233 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 292
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AIGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 293 AAHWLYKETGNK 304
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
AL K R++A+ET+ I+ LA RLG+W LK +LEDL F L P+ +R++ + S +
Sbjct: 159 ALSAEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPRHYRQVANLVDSKLAQ 218
Query: 68 RNRVGYSRRITTIVSS 83
R Y ++ I+ S
Sbjct: 219 RK--NYIEHVSAILQS 232
>gi|350564067|ref|ZP_08932886.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium aerophilum
AL3]
gi|349778067|gb|EGZ32426.1| (p)ppGpp synthetase I, SpoT/RelA [Thioalkalimicrobium aerophilum
AL3]
Length = 726
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 93/158 (58%), Gaps = 12/158 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KM RK + +YD RALR+ V D + CY L
Sbjct: 227 GIHARVTGRPKHIYSIWKKMSRKTQRLDDLYDLRALRIYVKD---------VAECYRCLS 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH W I EFDDYI +PK +GYQS+HT V GP+G +E+QIRT +MH++AE+G+AAH
Sbjct: 278 LVHEQWNFIRDEFDDYITSPKDNGYQSIHTVVMGPEGKTVEIQIRTHEMHQHAEYGIAAH 337
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 333
W YKE G + + E+ I + L + DD D
Sbjct: 338 WKYKEGG---KGYDARLEASINSMRQLLEHRDDAEVFD 372
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR- 68
P + +A ET LI+ LA+RLG+ LK ELEDL F L+P +++K+ ++LA R
Sbjct: 150 PEPVRKQIAAETQLIFAPLANRLGIAQLKWELEDLSFRFLEPDLYKKIASELADKRVERE 209
Query: 69 ----NRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDR 123
N + Y IT ++++ + R T +H+ S+ K + D L D
Sbjct: 210 NYIENLISY---ITQLLANAGIHARV-------TGRPKHIYSIWKKMSRKTQRLDDLYDL 259
Query: 124 RKRTKFLHDLAK 135
R ++ D+A+
Sbjct: 260 RALRIYVKDVAE 271
>gi|407791016|ref|ZP_11138105.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Gallaecimonas
xiamenensis 3-C-1]
gi|407201659|gb|EKE71656.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Gallaecimonas
xiamenensis 3-C-1]
Length = 725
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM RK + +++D RA+R++V P +Q CY+ L
Sbjct: 230 GVDAQVYGRPKHIYSIWKKMSRKHLAFDELFDVRAVRIIV---------PRLQDCYAALG 280
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + I EFDDY+ NPKP+GY+S+HT V GP G +E+QIRTQ MH+ AE G+AAH
Sbjct: 281 VVHTQFHHIPKEFDDYVANPKPNGYRSIHTVVVGPKGKTVEIQIRTQAMHDEAELGVAAH 340
Query: 296 WLYKETG 302
W YKE G
Sbjct: 341 WAYKEGG 347
>gi|421111743|ref|ZP_15572216.1| putative GTP diphosphokinase [Leptospira santarosai str. JET]
gi|410802939|gb|EKS09084.1| putative GTP diphosphokinase [Leptospira santarosai str. JET]
Length = 674
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLP-EKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|410449683|ref|ZP_11303736.1| putative GTP diphosphokinase [Leptospira sp. Fiocruz LV3954]
gi|418743759|ref|ZP_13300118.1| putative GTP diphosphokinase [Leptospira santarosai str. CBC379]
gi|418751581|ref|ZP_13307865.1| putative GTP diphosphokinase [Leptospira santarosai str. MOR084]
gi|409968054|gb|EKO35867.1| putative GTP diphosphokinase [Leptospira santarosai str. MOR084]
gi|410016440|gb|EKO78519.1| putative GTP diphosphokinase [Leptospira sp. Fiocruz LV3954]
gi|410795154|gb|EKR93051.1| putative GTP diphosphokinase [Leptospira santarosai str. CBC379]
gi|456874475|gb|EMF89768.1| putative GTP diphosphokinase [Leptospira santarosai str. ST188]
Length = 674
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLP-EKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|359685240|ref|ZP_09255241.1| GTP pyrophosphokinase [Leptospira santarosai str. 2000030832]
Length = 674
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLP-EKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|339499056|ref|YP_004697091.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta caldaria DSM 7334]
gi|338833405|gb|AEJ18583.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta caldaria DSM 7334]
Length = 678
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 90/136 (66%), Gaps = 9/136 (6%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
+E +++ + G+EV +++R K YSI+ KMR+++ G +++D +R++
Sbjct: 217 QEAILTETQKLGIEVVVNARAKHFYSIYQKMRKRNKGPEELFDLFGIRILCN-------- 268
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
+ CY+L+ VH LW PI+G F DYI PK +GYQSLHT V DG LE+QIRT++M
Sbjct: 269 -TVDDCYTLVGTVHHLWKPIEGRFKDYIAMPKSNGYQSLHTTVMSFDGKLLEIQIRTKEM 327
Query: 285 HEYAEHGLAAHWLYKE 300
H+ AE+G+A+HWLYK+
Sbjct: 328 HQIAEYGVASHWLYKK 343
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LPP + +A AQ+ L I+ LA RLG+ +K ELEDL L ++ +++ +A +
Sbjct: 150 LPPERRKANAQDCLDIYAPLADRLGISWIKDELEDLSLKHLNRDVYDQIKGIVA--LKKK 207
Query: 69 NRVGYSRRI 77
+R + R+
Sbjct: 208 DRESFLNRV 216
>gi|217967359|ref|YP_002352865.1| (p)ppGpp synthetase I SpoT/RelA [Dictyoglomus turgidum DSM 6724]
gi|217336458|gb|ACK42251.1| (p)ppGpp synthetase I, SpoT/RelA [Dictyoglomus turgidum DSM 6724]
Length = 727
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K LYSI+ KM R+ + I ++YD +RV+V + + CY +L
Sbjct: 229 GINAEVTGRAKHLYSIYQKMLRRGIEIEEMYDLLGVRVIVNSE---------KECYEVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI N K + YQSLHT V DG LEVQIRT +MH AE+G+AAH
Sbjct: 280 IIHNLWKPVPGRFKDYIANKKSNNYQSLHTTVIAMDGKPLEVQIRTWEMHRIAEYGIAAH 339
Query: 296 WLYKETGNKLQSIS---SMDESDIEASSSLSKDTDDHNPLDTDLFQK 339
WLYKE K S S +E L+ D + + +DLF++
Sbjct: 340 WLYKEEIKKPDSFEEKLSWLRQLLEWQKELTDDQEFLESIKSDLFER 386
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
K + +A+ETL I+ LA RLG+W +K LEDL F L+P+ + + +A R +
Sbjct: 155 KQKRIAKETLEIYAPLAHRLGVWDIKWRLEDLAFRYLEPEKYHYVAKKVAETRKEREK 212
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 496 SINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLR 555
S K+ LR +L W+++L + +S S + + V P G+++ L
Sbjct: 351 SFEEKLSWLRQLLEWQKELTDDQEFLES---------IKSDLFEREIYVFTPKGDVIALP 401
Query: 556 SGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
GST D A +VG + VNG++V N L++GDIVE+
Sbjct: 402 QGSTPIDFAYAIHTEVGHRCRGAKVNGRIVPLNYILQNGDIVEI 445
>gi|427392523|ref|ZP_18886528.1| RelA/SpoT family protein [Alloiococcus otitis ATCC 51267]
gi|425731484|gb|EKU94302.1| RelA/SpoT family protein [Alloiococcus otitis ATCC 51267]
Length = 736
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 101/172 (58%), Gaps = 23/172 (13%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E ++ R K +YSI+ KM+ + ++YD A+RV+V P+I+ CY++L
Sbjct: 234 IEANITGRPKHIYSIYRKMKNQKKQFGEIYDLLAIRVIV---------PSIKDCYAVLGA 284
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H W P+ G F DYI PK + YQSLHT V GPD + LEVQIRTQ+MHE AE+G+AAHW
Sbjct: 285 IHTRWKPMPGRFKDYIAMPKANMYQSLHTTVLGPDATPLEVQIRTQQMHEVAEYGVAAHW 344
Query: 297 LYKETGNKLQSISSMDESD----------IEASSSLSKDTDDHNPLDTDLFQ 338
YKE K Q + ++SD IE + + +D + + D+FQ
Sbjct: 345 AYKE--GKTQKVK--EDSDNKQLSWFRDIIELQTESNNASDFMDSIKEDIFQ 392
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
P K R +A+ETL I+ LA RLG+ +K ELED + PQ + ++ + S R R
Sbjct: 157 PEKQREIARETLEIYAPLADRLGISRIKWELEDTALRYINPQQYYRIVHLMKSRREDRER 216
>gi|357057600|ref|ZP_09118458.1| hypothetical protein HMPREF9334_00175 [Selenomonas infelix ATCC
43532]
gi|355374848|gb|EHG22139.1| hypothetical protein HMPREF9334_00175 [Selenomonas infelix ATCC
43532]
Length = 743
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 18/158 (11%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ KM+R + + ++YD A+RV+V +++ CY +L
Sbjct: 235 GIEAEIKGRAKHFYSIYRKMKRDNKSVSEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTKAMHQVSEFGVAAH 344
Query: 296 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 328
W YKE G +SI + DE+D + S SL K+ DD
Sbjct: 345 WKYKEAG---RSIGATDENDQKMSWLRQMVSLQKEYDD 379
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
K + +A+ET+ ++ LA+RLG+ ++K ELEDLC L+P+ +
Sbjct: 161 KRQRIAKETIEVYAPLANRLGISSIKVELEDLCLRYLEPEAY 202
>gi|422005240|ref|ZP_16352435.1| GTP pyrophosphokinase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|417256095|gb|EKT85535.1| GTP pyrophosphokinase [Leptospira santarosai serovar Shermani str.
LT 821]
Length = 674
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW PI G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPIPGRFKDYIATPKTNLYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLP-EKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|269836765|ref|YP_003318993.1| (p)ppGpp synthetase I SpoT/RelA [Sphaerobacter thermophilus DSM
20745]
gi|269786028|gb|ACZ38171.1| (p)ppGpp synthetase I, SpoT/RelA [Sphaerobacter thermophilus DSM
20745]
Length = 748
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S+R K + SI KM RK ++YD +RV+V +K CY L
Sbjct: 262 GIRAEISAREKHITSIARKMERKGRSFDEIYDVLGVRVIVDEKKD---------CYGALG 312
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI GEFDDYI PK S YQS+HTAV GPDG LE+QIRT +MH AE+G+AAH
Sbjct: 313 VIHTMWHPIPGEFDDYIATPKESMYQSIHTAVLGPDGHPLEIQIRTAEMHHVAEYGIAAH 372
Query: 296 WLYKE 300
W YKE
Sbjct: 373 WRYKE 377
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+P AK AQET+ I+ LA+RLG+W LK+ELEDL L PQ + ++ L + R
Sbjct: 184 MPRAKQLRSAQETMEIYAPLANRLGIWQLKSELEDLALRYLDPQTYFSIKRALDRRGTDR 243
Query: 69 NRVGYSRRI 77
R Y +R+
Sbjct: 244 ER--YLQRV 250
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 27/160 (16%)
Query: 454 HLTEEEESEYWAVVSAVF--EGKPVDSVVSRRSSDSVAPTSMEA------------SINN 499
++ +ES Y ++ +AV +G P++ + VA + A ++
Sbjct: 328 YIATPKESMYQSIHTAVLGPDGHPLEIQIRTAEMHHVAEYGIAAHWRYKEGARPDPNVEA 387
Query: 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
K+ LR ++ W +++ +S S V E++ V P G+I+ L +G+T
Sbjct: 388 KIAWLRQLMDWRDEVVDAQEFVESL---------KSDVFQEMIYVFTPKGDIIELPAGAT 438
Query: 560 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
D A + VG + VN QLV N L++G +V++
Sbjct: 439 PVDFAYRIHTEVGHQCVGAKVNNQLVPLNYRLQNGQVVQI 478
>gi|399050755|ref|ZP_10740799.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. CF112]
gi|433545167|ref|ZP_20501527.1| GTP pyrophosphokinase [Brevibacillus agri BAB-2500]
gi|398051471|gb|EJL43793.1| (p)ppGpp synthetase, RelA/SpoT family [Brevibacillus sp. CF112]
gi|432183556|gb|ELK41097.1| GTP pyrophosphokinase [Brevibacillus agri BAB-2500]
Length = 723
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E +S R K +YSIF KM +++ +++YD ALR++V D I+ CY++L
Sbjct: 229 NIEAEISGRPKHIYSIFKKMTKQNKQFNEIYDLLALRIIVND---------IRDCYAVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH+ AE G+AAH
Sbjct: 280 IVHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWDMHQTAEIGIAAH 339
Query: 296 WLYKETGNKLQ 306
W YKE + +Q
Sbjct: 340 WAYKEGKSVVQ 350
>gi|116328856|ref|YP_798576.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330538|ref|YP_800256.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116121600|gb|ABJ79643.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116124227|gb|ABJ75498.1| GTP pyrophosphokinase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP + R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLPEKQKR-IAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|119944303|ref|YP_941983.1| (p)ppGpp synthetase I and guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase [Psychromonas ingrahamii 37]
gi|119862907|gb|ABM02384.1| (p)ppGpp synthetase I and guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase [Psychromonas ingrahamii 37]
Length = 737
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 81/121 (66%), Gaps = 9/121 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
T R K +YSI+ KM++K++ +YD RA+RVVV +Q CY+ L +H
Sbjct: 246 TAYGRPKHIYSIYRKMQKKNLQFEDLYDVRAVRVVV---------EKLQDCYAALGAIHT 296
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
W I EFDDYI NPK +GYQS+HT V GP+G A+EVQIRT+KMHE +E G+AAHW YK
Sbjct: 297 QWRHIPSEFDDYIANPKANGYQSIHTVVLGPEGKAVEVQIRTRKMHEDSELGVAAHWKYK 356
Query: 300 E 300
E
Sbjct: 357 E 357
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
VA E I+ LA+RLG+ LK ELEDL F L+P+I++K+ L
Sbjct: 172 VASEISSIYAPLANRLGIGQLKWELEDLSFRYLEPEIYKKIAKQL 216
>gi|82703620|ref|YP_413186.1| (p)ppGpp synthetase SpoT/RelA [Nitrosospira multiformis ATCC 25196]
gi|82411685|gb|ABB75794.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Nitrosospira multiformis ATCC 25196]
Length = 729
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ KM+RK V ++ D RA+R++V + ++ CY+ L
Sbjct: 246 GIKAQITGRPKHIYSIYRKMKRKGVDFKEIQDTRAVRILVDE---------VKDCYAALG 296
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW+PI EFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH ++E G+AAH
Sbjct: 297 LVHNLWMPIPKEFDDYIAKPKGNDYRSLHTAVIGPEDKVVEVQIRTHEMHRHSEMGVAAH 356
Query: 296 WLYKETGNK 304
W YKE +
Sbjct: 357 WRYKEGAKR 365
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 30/40 (75%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ TL I+ LA+RLGLW +K ELEDL F + +P+ ++K+
Sbjct: 177 AEVTLNIFAPLANRLGLWQVKWELEDLSFRITEPERYKKI 216
>gi|307545602|ref|YP_003898081.1| GTP pyrophosphokinase [Halomonas elongata DSM 2581]
gi|307217626|emb|CBV42896.1| GTP pyrophosphokinase [Halomonas elongata DSM 2581]
Length = 761
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 88/144 (61%), Gaps = 9/144 (6%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E L S G++ + R K +YSI+ KM+RK + +V+D RA+R++V P
Sbjct: 243 ETLKSLMDAQGIQHQVDGRAKHIYSIWRKMKRKRIDFSQVHDIRAVRILV---------P 293
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
+ CY++L IVH W + EFDDYI NPK +GYQSLHTAV GP+G LE+QIRT MH
Sbjct: 294 DVSDCYAVLGIVHSRWHHVPNEFDDYIANPKKNGYQSLHTAVFGPEGKVLEIQIRTFAMH 353
Query: 286 EYAEHGLAAHWLYKETGNKLQSIS 309
E AE G+ AHW YK +S S
Sbjct: 354 EEAELGVCAHWRYKGHDTSARSAS 377
>gi|418721778|ref|ZP_13280952.1| putative GTP diphosphokinase [Leptospira borgpetersenii str. UI
09149]
gi|421095922|ref|ZP_15556630.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200801926]
gi|410361337|gb|EKP12382.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200801926]
gi|410741822|gb|EKQ90575.1| putative GTP diphosphokinase [Leptospira borgpetersenii str. UI
09149]
gi|456889585|gb|EMG00473.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200701203]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP + R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLPEKQKR-IAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|359727202|ref|ZP_09265898.1| GTP pyrophosphokinase [Leptospira weilii str. 2006001855]
gi|417779516|ref|ZP_12427301.1| putative GTP diphosphokinase [Leptospira weilii str. 2006001853]
gi|410780345|gb|EKR64939.1| putative GTP diphosphokinase [Leptospira weilii str. 2006001853]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLP-EKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|71728397|gb|EAO30564.1| RelA/SpoT protein [Xylella fastidiosa Ann-1]
Length = 718
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVEDMDA---------CYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV
Sbjct: 159 SQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRV 213
Query: 72 GYSRRITTI 80
R I+ I
Sbjct: 214 ARERYISVI 222
>gi|421100332|ref|ZP_15560964.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200901122]
gi|410796642|gb|EKR98769.1| putative GTP diphosphokinase [Leptospira borgpetersenii str.
200901122]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLP-EKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|421130113|ref|ZP_15590310.1| putative GTP diphosphokinase [Leptospira kirschneri str.
2008720114]
gi|410358572|gb|EKP05728.1| putative GTP diphosphokinase [Leptospira kirschneri str.
2008720114]
Length = 674
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 157 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|71731045|gb|EAO33113.1| RelA/SpoT protein [Xylella fastidiosa Ann-1]
Length = 718
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV
Sbjct: 159 SQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASAL-----DESRV 213
Query: 72 GYSRRITTI 80
R I+ I
Sbjct: 214 ARERYISVI 222
>gi|456865837|gb|EMF84149.1| putative GTP diphosphokinase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 674
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLP-EKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TE++ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTEIRSGDQIEI 450
>gi|398333292|ref|ZP_10517997.1| GTP pyrophosphokinase [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 674
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP K R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLP-EKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|375335787|ref|ZP_09777131.1| (p)ppGpp synthetase I SpoT/RelA [Succinivibrionaceae bacterium
WG-1]
Length = 747
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM++K + +YD RA+RV+V +Q CY+ L
Sbjct: 242 GLNAEVYGRPKHIYSIWRKMQKKHLDFSGLYDVRAVRVIV---------DRLQDCYAALG 292
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + I EFDDYI NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 293 VVHTKYHHIPREFDDYIANPKPNGYQSIHTVVIGPNGKTVEIQIRTSEMHKNAELGVAAH 352
Query: 296 WLYKETGN 303
W YKE GN
Sbjct: 353 WKYKEGGN 360
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+E I+ LA+RLG+ LK ELEDL F L P I++++
Sbjct: 172 VAKEISNIYAPLANRLGIGQLKWELEDLAFRYLHPDIYKQI 212
>gi|302339536|ref|YP_003804742.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta smaragdinae DSM 11293]
gi|301636721|gb|ADK82148.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta smaragdinae DSM
11293]
Length = 668
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
L+ + +++ + +R K LYSI+ KM+R+ I ++YD +R++ +
Sbjct: 220 LLKAAAAEKIDIEVMARAKHLYSIYLKMKRRKKDISEIYDLLGIRIICSTTSE------- 272
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
CY+LL +VH+LW PI+G F DYI PK + YQSLHT V G DG +E+QIRT++MH
Sbjct: 273 --CYTLLGVVHKLWPPIEGRFKDYIAMPKANNYQSLHTTVMGFDGQLIEIQIRTREMHNL 330
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW+YK+ G++
Sbjct: 331 AEYGIAAHWVYKQDGSR 347
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K +A+A E L I+ LA RLG+ LKAELEDL L P + + +AS
Sbjct: 150 LSPEKRKAIATECLDIYAPLADRLGISWLKAELEDLALKHLNPSAWEYINQFVAS--KKT 207
Query: 69 NRVGYSRRI 77
R Y ++I
Sbjct: 208 ERANYLKKI 216
>gi|334136491|ref|ZP_08509954.1| GTP diphosphokinase [Paenibacillus sp. HGF7]
gi|333605960|gb|EGL17311.1| GTP diphosphokinase [Paenibacillus sp. HGF7]
Length = 728
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 84/128 (65%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI KM ++ +++YD ALRV+V + I+ CY+ L
Sbjct: 227 GIEGDISGRPKHIYSIHKKMSSRNKQFNEIYDLMALRVIVDN---------IKDCYAALG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKETGN 303
W YKE GN
Sbjct: 338 WAYKE-GN 344
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIADETLEIFCPIAHRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|71274878|ref|ZP_00651166.1| RelA/SpoT protein [Xylella fastidiosa Dixon]
gi|71164610|gb|EAO14324.1| RelA/SpoT protein [Xylella fastidiosa Dixon]
Length = 718
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV
Sbjct: 159 SQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRV 213
Query: 72 GYSRRITTI 80
R I+ I
Sbjct: 214 ARERYISVI 222
>gi|28198473|ref|NP_778787.1| ATP:GTP 3'-pyrophosphotransferase [Xylella fastidiosa Temecula1]
gi|182681151|ref|YP_001829311.1| RelA/SpoT family protein [Xylella fastidiosa M23]
gi|386084649|ref|YP_006000931.1| RelA/SpoT family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559170|ref|ZP_12210123.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Xylella
fastidiosa EB92.1]
gi|28056557|gb|AAO28436.1| ATP:GTP 3'-pyrophosphotranferase [Xylella fastidiosa Temecula1]
gi|182631261|gb|ACB92037.1| RelA/SpoT family protein [Xylella fastidiosa M23]
gi|307579596|gb|ADN63565.1| RelA/SpoT family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338178254|gb|EGO81246.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase [Xylella
fastidiosa EB92.1]
Length = 718
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV
Sbjct: 159 SQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRV 213
Query: 72 GYSRRITTI 80
R I+ I
Sbjct: 214 ARERYISVI 222
>gi|418735206|ref|ZP_13291618.1| putative GTP diphosphokinase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410749462|gb|EKR02354.1| putative GTP diphosphokinase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 674
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
S+ LP + R +AQETL ++ +A RLG++ +K+ELEDL F VL P+ +++++ ++ S
Sbjct: 153 LSFQLPEKQKR-IAQETLSLYAPIAGRLGIYKIKSELEDLAFQVLNPEEYQEVKKNINSK 211
Query: 65 WSPR 68
S R
Sbjct: 212 KSER 215
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|260891210|ref|ZP_05902473.1| GTP diphosphokinase [Leptotrichia hofstadii F0254]
gi|260859237|gb|EEX73737.1| GTP diphosphokinase [Leptotrichia hofstadii F0254]
Length = 389
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K LYSI+ KM K +YD A+R++V KN CY++L I+H L
Sbjct: 266 VTGRPKHLYSIYRKMNEKQKRFMDLYDLIAIRIIVEKKNE---------CYNVLGIIHDL 316
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+IP+ F DY+ PKP+GYQS+HT V+GP+ +E+QIRTQ+MHE AE G+AAHW YKE
Sbjct: 317 FIPVFDRFKDYVAQPKPNGYQSIHTTVKGPNNQNVEIQIRTQEMHEIAEEGVAAHWKYKE 376
Query: 301 TGNKLQSISSM 311
L+ + M
Sbjct: 377 KNQNLKMKNFM 387
>gi|170729869|ref|YP_001775302.1| GTP diphosphokinase [Xylella fastidiosa M12]
gi|167964662|gb|ACA11672.1| GTP diphosphokinase [Xylella fastidiosa M12]
Length = 718
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +VYD +A+RV+V D + CY+ L
Sbjct: 234 GVCAEVSGRPKHIYSIWRKMQKKRLHFEQVYDLQAVRVMVED---------MAACYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ GEFDDYI PK + Y+SLHTAV GP+ +EVQIRT +MH +AE G+AAH
Sbjct: 285 VVHALWAPVPGEFDDYIARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAH 344
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 345 WKYKEDGK 352
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
++ RA+AQ T I LA+RLG+W LK ELEDL F L+ +I+R + + L +RV
Sbjct: 159 SQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEIYRSIASALDE-----SRV 213
Query: 72 GYSRRITTI 80
R I+ I
Sbjct: 214 ARERYISVI 222
>gi|217972410|ref|YP_002357161.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS223]
gi|217497545|gb|ACK45738.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS223]
Length = 736
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGN 360
Query: 303 NKLQSISSMDE 313
N+ S +E
Sbjct: 361 NQSGKQSGYEE 371
>gi|88813282|ref|ZP_01128521.1| (p)ppGpp synthetase I [Nitrococcus mobilis Nb-231]
gi|88789454|gb|EAR20582.1| (p)ppGpp synthetase I [Nitrococcus mobilis Nb-231]
Length = 737
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E ++ R K +YSI+ KM++K +G H + D RA+RV+V I CY+ L
Sbjct: 247 GIEAQVAGRAKHIYSIWRKMQQKSLGFHDLLDIRAIRVLV---------RTIPDCYAALG 297
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++ LW PI +DDYI PK + YQSLH AV GP G +LEVQIRT++MH+ AE G+AAH
Sbjct: 298 VIQSLWQPIPHGYDDYIATPKANNYQSLHAAVIGPTGKSLEVQIRTREMHQRAELGVAAH 357
Query: 296 WLYKETGNK 304
W YKE G +
Sbjct: 358 WRYKEGGQR 366
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
+A++TL ++ LA+RLGL +K ELED +L+P+ +R++ LA R R
Sbjct: 177 MARQTLELYAPLANRLGLSRIKWELEDRSLRILEPEDYRRIARSLAEKRVERER 230
>gi|381179641|ref|ZP_09888490.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema saccharophilum DSM
2985]
gi|380768465|gb|EIC02455.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema saccharophilum DSM
2985]
Length = 613
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++V ++SR K YSI+ KMR+++ G ++YD ALR++ CY+L+
Sbjct: 244 GIKVQITSRAKHFYSIYQKMRKRNKGADELYDLLALRIIC---------TTTTECYTLIG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW P+DG F DYI PK +GYQSLHT V +G LE+QIRT MH AEHG+A+H
Sbjct: 295 IVHGLWKPMDGRFKDYIAMPKSNGYQSLHTTVVC-EGKPLEIQIRTADMHNMAEHGIASH 353
Query: 296 WLYKETGN 303
WLYK+ N
Sbjct: 354 WLYKKGMN 361
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
A+ P K R VA E L IW LA RLG+ +K+E+EDL P +F++++ +A
Sbjct: 165 AIAPKKQRLVAAEVLDIWAPLADRLGMQNVKSEMEDLSLKYANPDVFQQIKRIVAQKKDE 224
Query: 68 R 68
R
Sbjct: 225 R 225
>gi|160876395|ref|YP_001555711.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS195]
gi|378709596|ref|YP_005274490.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS678]
gi|160861917|gb|ABX50451.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS195]
gi|315268585|gb|ADT95438.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS678]
Length = 736
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGN 360
Query: 303 NKLQSISSMDE 313
N+ S +E
Sbjct: 361 NQSGKQSGYEE 371
>gi|410938453|ref|ZP_11370300.1| putative GTP diphosphokinase [Leptospira noguchii str. 2006001870]
gi|410786378|gb|EKR75322.1| putative GTP diphosphokinase [Leptospira noguchii str. 2006001870]
Length = 680
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 241 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 291
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 292 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 351
Query: 297 LYKE 300
+YKE
Sbjct: 352 MYKE 355
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 163 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 221
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 399 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 456
>gi|381210458|ref|ZP_09917529.1| GTP pyrophosphokinase [Lentibacillus sp. Grbi]
Length = 733
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E +S R K LYSI+ KM +++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEADISGRPKHLYSIYRKMAKQNKQFNEIYDLLAVRILVH---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LPP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPPNKQRRISNETLEIFAPLAHRLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|197121709|ref|YP_002133660.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter sp. K]
gi|220916506|ref|YP_002491810.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-1]
gi|196171558|gb|ACG72531.1| (p)ppGpp synthetase I, SpoT/RelA [Anaeromyxobacter sp. K]
gi|219954360|gb|ACL64744.1| (p)ppGpp synthetase I, SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-1]
Length = 746
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
GM+ +S R+K +YSI+ KMR+ DV ++ D RV+V + CY L
Sbjct: 250 GMQADVSGRVKHVYSIYRKMRQLDVDFEQIQDVVGFRVIVD---------TVAECYESLG 300
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ G F DYI PKP+ YQSLHT V GP G +EVQIRT++MH AE G+AAH
Sbjct: 301 FVHSLWKPVPGRFKDYIAIPKPNLYQSLHTTVVGPAGERIEVQIRTREMHRIAEEGVAAH 360
Query: 296 WLYKETG 302
W YKE G
Sbjct: 361 WAYKEKG 367
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 51
A+ P +A+ETL I+ LA+RLG+ +K ELE+L F L+P
Sbjct: 171 AMKPESQERIARETLDIYAPLANRLGIQWIKTELEELSFKYLRP 214
>gi|398338439|ref|ZP_10523142.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
kirschneri serovar Bim str. 1051]
gi|418676031|ref|ZP_13237317.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688085|ref|ZP_13249242.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418695002|ref|ZP_13256028.1| putative GTP diphosphokinase [Leptospira kirschneri str. H1]
gi|418739479|ref|ZP_13295863.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421089191|ref|ZP_15550005.1| putative GTP diphosphokinase [Leptospira kirschneri str. 200802841]
gi|421106960|ref|ZP_15567521.1| putative GTP diphosphokinase [Leptospira kirschneri str. H2]
gi|400323796|gb|EJO71644.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|409957161|gb|EKO16076.1| putative GTP diphosphokinase [Leptospira kirschneri str. H1]
gi|410002142|gb|EKO52665.1| putative GTP diphosphokinase [Leptospira kirschneri str. 200802841]
gi|410007974|gb|EKO61652.1| putative GTP diphosphokinase [Leptospira kirschneri str. H2]
gi|410737509|gb|EKQ82250.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410753279|gb|EKR10248.1| putative GTP diphosphokinase [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 674
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 MYKE 349
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 157 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|392549117|ref|ZP_10296254.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
rubra ATCC 29570]
Length = 718
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 86/135 (63%), Gaps = 9/135 (6%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
EL+ S G+E + R K +YSI+ KM +K+ +++D RA+RVVV +
Sbjct: 224 ELVQSKLKDAGIEAEVYGRPKHIYSIYKKMMQKNYEFDQLFDIRAMRVVVNE-------- 275
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
IQ CY L IVH W + EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH
Sbjct: 276 -IQDCYGALGIVHTNWRHLHKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQAMH 334
Query: 286 EYAEHGLAAHWLYKE 300
+ AE G+AAHW+YKE
Sbjct: 335 QDAELGVAAHWMYKE 349
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 77
A+ T I+ LA+RLG+ LK ELEDL F L P ++ + L+ +R Y +
Sbjct: 165 AKATANIFAPLANRLGIGQLKWELEDLSFRYLHPTTYKNIAKQLSD--KRLDREAYMASM 222
Query: 78 TTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
+V S D A + +H+ S+ K +++ FD L D R
Sbjct: 223 VELVQSKLKD---AGIEAEVYGRPKHIYSIYKKMMQKNYEFDQLFDIR 267
>gi|78485556|ref|YP_391481.1| (p)ppGpp synthetase SpoT/RelA [Thiomicrospira crunogena XCL-2]
gi|78363842|gb|ABB41807.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Thiomicrospira crunogena XCL-2]
Length = 716
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM RK+V I +++D RA+R+ V +Q CY +L
Sbjct: 225 GIEHHISGRPKHIYSIWKKMTRKNVPIDELFDLRAVRIYVD---------TVQQCYEVLG 275
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H W I EFDDYI NPK +GYQS+HT + G + +E+QIRT +MH +AE G+AAH
Sbjct: 276 MIHSRWPYIKDEFDDYIANPKENGYQSIHTVIIGAENKTVEIQIRTHEMHRHAEFGVAAH 335
Query: 296 WLYKETGNKL 305
W YKE G +
Sbjct: 336 WRYKEGGKSI 345
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P A + +A ET +I+ LA+RLG+ LK ELEDL F LQP ++++ L +
Sbjct: 148 PEAIRQQIASETQMIFAPLANRLGIAQLKWELEDLSFRFLQPDTYKEVARQLDA-----K 202
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R G I I+ S + + + + +H+ S+ K + VP D L D R
Sbjct: 203 RHGRETYIQGIIQSLEEMLKDSGIEHHISGRPKHIYSIWKKMTRKNVPIDELFDLR 258
>gi|422348597|ref|ZP_16429490.1| RelA/SpoT family protein [Sutterella wadsworthensis 2_1_59BFAA]
gi|404659128|gb|EKB31986.1| RelA/SpoT family protein [Sutterella wadsworthensis 2_1_59BFAA]
Length = 703
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + +++D RA+R++V ++ CY +L
Sbjct: 223 GIKAEVSGRPKHIYSIWKKMQRKHLRFDQLFDVRAVRIIVD---------TVERCYQVLS 273
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + I E+DDYI PKP+GYQSLHT V G LE+QIRT+ MHE+AE G+AAH
Sbjct: 274 IVHENFPVISKEYDDYIAKPKPNGYQSLHTVVTDKAGRPLEIQIRTRAMHEFAELGVAAH 333
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE GN + S+ ++
Sbjct: 334 WRYKEAGNSNGATSAEEQ 351
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A ETL ++ LA+RLG+W LK ELEDL +P +R++ L
Sbjct: 150 AEKFGTETLDLYAPLANRLGIWQLKWELEDLSLRFTRPSEYREIAQQL 197
>gi|302803634|ref|XP_002983570.1| hypothetical protein SELMODRAFT_118606 [Selaginella moellendorffii]
gi|300148813|gb|EFJ15471.1| hypothetical protein SELMODRAFT_118606 [Selaginella moellendorffii]
Length = 540
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 149 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 208
G+ L+++ E L+K L S I L R K+L+SI++KM++K I ++YD
Sbjct: 208 GGVVLSAI----EQLDKALRKSKIKIED----LCGRSKTLFSIYTKMKKKGRSIDEIYDV 259
Query: 209 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 268
R LR++V D+ CY L+ VH+LW I G+ DYI PK +GYQSLHT V
Sbjct: 260 RGLRLIVKDEAD---------CYKALEFVHKLWDHIPGKLKDYIKQPKANGYQSLHTVVS 310
Query: 269 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 307
G DG LEVQIRT++MH +AE G+AAHW YKE + S
Sbjct: 311 GKDGLPLEVQIRTKEMHSHAEFGMAAHWRYKEGNDTKHS 349
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
AL K +A ETL I +A+RLG+W+ KAE+EDLCF L P ++++ A L
Sbjct: 149 ALATEKQNRIASETLEILVPIANRLGIWSWKAEMEDLCFKYLNPTEYQELAAKL 202
>gi|269926113|ref|YP_003322736.1| (p)ppGpp synthetase I SpoT/RelA [Thermobaculum terrenum ATCC
BAA-798]
gi|269789773|gb|ACZ41914.1| (p)ppGpp synthetase I, SpoT/RelA [Thermobaculum terrenum ATCC
BAA-798]
Length = 721
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K LYSI+ KM +K +++D LRV+ + + CY+ L
Sbjct: 234 GIPAEITGRRKHLYSIYRKMEQKQRSFDQIFDVLGLRVITDE---------VMQCYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI GEFDDYI PK S YQSLHTAV G DG LE+QIRT+ MHE AE+G+AAH
Sbjct: 285 VIHSIWRPIPGEFDDYIAMPKESMYQSLHTAVVGLDGKPLEIQIRTRDMHEVAEYGIAAH 344
Query: 296 WLYKE 300
W YKE
Sbjct: 345 WRYKE 349
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
LP K + A+ETL I+ LA RLG++ ++ELEDL F VL P +R++ A +
Sbjct: 156 LPRDKQLSKARETLEIYAPLAGRLGIFKFRSELEDLSFKVLYPDKYREIAAQV 208
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 27/156 (17%)
Query: 459 EESEYWAVVSAV--FEGKPVDSVVSRRSSDSVAPTSMEA------------SINNKVRLL 504
+ES Y ++ +AV +GKP++ + R VA + A + +++ L
Sbjct: 305 KESMYQSLHTAVVGLDGKPLEIQIRTRDMHEVAEYGIAAHWRYKEGKKANEAAEHRITWL 364
Query: 505 RTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAA 564
R +L W +++ +S S + E + V PNG+++ L G+T D A
Sbjct: 365 RQLLEWRDEVADAQEFVESM---------KSDLLQEHIYVFTPNGDVVELPRGATPIDFA 415
Query: 565 MKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEVR 596
++ E G + VNG+LV + L++GD+V++R
Sbjct: 416 YRIHTEIGHHCVGATVNGRLVSLDYVLQNGDVVKIR 451
>gi|418702279|ref|ZP_13263190.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410758798|gb|EKR25024.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 674
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 IYKE 349
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 157 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|294828236|ref|NP_713265.2| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. 56601]
gi|417760220|ref|ZP_12408246.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000624]
gi|417765432|ref|ZP_12413394.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417768721|ref|ZP_12416648.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|417776288|ref|ZP_12424129.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000621]
gi|417785522|ref|ZP_12433226.1| putative GTP diphosphokinase [Leptospira interrogans str. C10069]
gi|418666430|ref|ZP_13227853.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418675521|ref|ZP_13236812.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000623]
gi|418682526|ref|ZP_13243741.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|418693250|ref|ZP_13254313.1| putative GTP diphosphokinase [Leptospira interrogans str. FPW2026]
gi|418705583|ref|ZP_13266447.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418709158|ref|ZP_13269952.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717424|ref|ZP_13277086.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 08452]
gi|418723737|ref|ZP_13282571.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12621]
gi|418731431|ref|ZP_13289830.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12758]
gi|421116511|ref|ZP_15576896.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421119978|ref|ZP_15580292.1| putative GTP diphosphokinase [Leptospira interrogans str. Brem 329]
gi|421125931|ref|ZP_15586175.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135462|ref|ZP_15595584.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|293386086|gb|AAN50283.2| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. 56601]
gi|400325689|gb|EJO77963.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|400352369|gb|EJP04565.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400356908|gb|EJP13066.1| putative GTP diphosphokinase [Leptospira interrogans str. FPW2026]
gi|409943787|gb|EKN89378.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000624]
gi|409949367|gb|EKN99344.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|409951387|gb|EKO05902.1| putative GTP diphosphokinase [Leptospira interrogans str. C10069]
gi|409962535|gb|EKO26269.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12621]
gi|410011971|gb|EKO70077.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410020359|gb|EKO87162.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410347064|gb|EKO97983.1| putative GTP diphosphokinase [Leptospira interrogans str. Brem 329]
gi|410436583|gb|EKP85695.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410573896|gb|EKQ36937.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000621]
gi|410577683|gb|EKQ45553.1| putative GTP diphosphokinase [Leptospira interrogans str.
2002000623]
gi|410757794|gb|EKR19401.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410764849|gb|EKR35552.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410770494|gb|EKR45713.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410773963|gb|EKR53984.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 12758]
gi|410787021|gb|EKR80756.1| putative GTP diphosphokinase [Leptospira interrogans str. UI 08452]
gi|455665880|gb|EMF31366.1| putative GTP diphosphokinase [Leptospira interrogans serovar Pomona
str. Fox 32256]
gi|455791273|gb|EMF43089.1| putative GTP diphosphokinase [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456825939|gb|EMF74313.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 674
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 IYKE 349
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 157 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|90021883|ref|YP_527710.1| GTP diphosphokinase [Saccharophagus degradans 2-40]
gi|89951483|gb|ABD81498.1| RelA/SpoT family protein [Saccharophagus degradans 2-40]
Length = 746
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K +YSI+ KMR+K++ +VYD RA+R++V + + CY++L I
Sbjct: 260 IEADVFGRAKHIYSIWRKMRKKNIDFSQVYDIRAIRILVNTE---------RECYTVLGI 310
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW I EFDDYI NPK +GY+SLHTAV GP LEVQIRT+ MHE AE G+ AHW
Sbjct: 311 VHALWRNIPLEFDDYIANPKENGYRSLHTAVHGPGSRVLEVQIRTKAMHEEAEFGVCAHW 370
Query: 297 LYK 299
YK
Sbjct: 371 RYK 373
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 494 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 553
EAS K+ LR +L W E++ G + + + V + + + P G ++
Sbjct: 381 EASYEGKIAWLRQVLEWHEEVG----------GSPWDDHLTASVEQDRIYLFTPEGHVID 430
Query: 554 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
L G+T D A + VGL + +NG++V N LK D VE+
Sbjct: 431 LPEGATPVDFAFRIHSDVGLRCRGAKINGRIVPLNHPLKTADQVEI 476
>gi|45656898|ref|YP_000984.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Copenhageni str. Fiocruz L1-130]
gi|421087294|ref|ZP_15548135.1| putative GTP diphosphokinase [Leptospira santarosai str. HAI1594]
gi|421102246|ref|ZP_15562852.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45600135|gb|AAS69621.1| guanosine polyphosphate pyrophosphohydrolases/synthetases
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|410367953|gb|EKP23335.1| putative GTP diphosphokinase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410430403|gb|EKP74773.1| putative GTP diphosphokinase [Leptospira santarosai str. HAI1594]
Length = 674
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 IYKE 349
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 157 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|157374426|ref|YP_001473026.1| GTP diphosphokinase [Shewanella sediminis HAW-EB3]
gi|157316800|gb|ABV35898.1| GTP diphosphokinase [Shewanella sediminis HAW-EB3]
Length = 735
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWKKMKGKDLTFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 301
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
>gi|456989321|gb|EMG24130.1| putative GTP diphosphokinase, partial [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 493
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 IYKE 349
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 157 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPKGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|78044718|ref|YP_361036.1| GTP pyrophosphokinase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996833|gb|ABB15732.1| GTP pyrophosphokinase [Carboxydothermus hydrogenoformans Z-2901]
Length = 716
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K LYSIF KMR + +VYD A+RV+V +++ CY++L
Sbjct: 228 NIKAKIEGRPKHLYSIFQKMREQQKDFSEVYDVMAVRVIV---------ESVRDCYTVLG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H +WIP+ G F DYI PK + YQSLHT V GP G LE+QIRT +MH AE+G+AAH
Sbjct: 279 IIHTMWIPVPGRFKDYIAMPKSNMYQSLHTTVIGPFGEPLEIQIRTFEMHRTAEYGIAAH 338
Query: 296 WLYKETG 302
W YKE G
Sbjct: 339 WRYKEGG 345
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
P K + +A+ETL I+ LA RLG++ +K ELEDL F L P + + +A + R +
Sbjct: 152 PEKQKEIARETLEIFAPLAHRLGIYRIKWELEDLAFRYLDPDNYYDIVEKIAKTRAKREQ 211
Query: 71 VGYSRRITTIV 81
Y +++ +I+
Sbjct: 212 --YIQQVISIL 220
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 494 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 553
+ + K+ LR +L W+ +L+ ++ K + DSV V P G+++
Sbjct: 348 DKKFDEKLSWLRQILEWQRELKDAREFMETL---KVDIFSDSV------FVFTPKGDVVE 398
Query: 554 LRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
L +GS D A + VG VNG+LV + +LK+GDIVE+
Sbjct: 399 LPAGSVPIDFAYRIHTDVGNRCVGAKVNGRLVPLDYQLKNGDIVEI 444
>gi|383316137|ref|YP_005376979.1| RelA/SpoT family (p)ppGpp synthetase [Frateuria aurantia DSM 6220]
gi|379043241|gb|AFC85297.1| (p)ppGpp synthetase, RelA/SpoT family [Frateuria aurantia DSM 6220]
Length = 714
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 90/150 (60%), Gaps = 18/150 (12%)
Query: 155 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
SL +EAL K G++ L+ R K +YSI+ KM+RK + +YD RA+R++
Sbjct: 217 SLTMLKEALAK---------AGIQADLAGRPKHIYSIWKKMQRKSLEFSDLYDIRAVRIL 267
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V ++ CY+ L +VH LW + GEFDDYI PK + Y+SLHTAV GP G
Sbjct: 268 VD---------SVADCYAALGVVHTLWPNLPGEFDDYIARPKGNDYRSLHTAVIGPQGKT 318
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
LEVQIRT +MH+ E G+AAHW YKE G
Sbjct: 319 LEVQIRTHEMHQINELGVAAHWRYKEGGGN 348
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+AQ T I LA+RLG+W LK ELEDL F LQP ++++
Sbjct: 157 RALAQLTRDIHAPLANRLGIWQLKWELEDLAFRYLQPDTYKRI 199
>gi|378823441|ref|ZP_09846075.1| RelA/SpoT family protein [Sutterella parvirubra YIT 11816]
gi|378597745|gb|EHY30999.1| RelA/SpoT family protein [Sutterella parvirubra YIT 11816]
Length = 704
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM+RK + +++D RALR++V ++ CY +L IVH
Sbjct: 229 ISGRPKHIYSIWKKMQRKHLRFDQLFDVRALRIIV---------KTVEECYQVLSIVHEH 279
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ I E+DDYI PKP+GYQSLHT V P G +E+QIRT+ MH++AE G+AAHW YKE
Sbjct: 280 FPVISKEYDDYIAKPKPNGYQSLHTVVTDPAGRPIEIQIRTRAMHDFAELGVAAHWRYKE 339
Query: 301 TGNKLQSISSMDE 313
GN + S+ ++
Sbjct: 340 AGNSEGATSAEEQ 352
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A A QETL ++ LA+RLG+W +K ELEDL +P +R + +L
Sbjct: 148 AGADKFGQETLALYAPLANRLGIWQMKWELEDLSLRFTRPDEYRAIAEEL 197
>gi|210623794|ref|ZP_03294054.1| hypothetical protein CLOHIR_02005 [Clostridium hiranonis DSM 13275]
gi|210153376|gb|EEA84382.1| hypothetical protein CLOHIR_02005 [Clostridium hiranonis DSM 13275]
Length = 771
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 83/134 (61%), Gaps = 15/134 (11%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K YSI+ KM+ K+ +++D A+RV+V ++ CY++L +VH LW P
Sbjct: 268 RPKHFYSIYRKMKNKNKSFEEIFDLTAVRVLVD---------TVKDCYAVLGVVHTLWKP 318
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
I G F DYI PKP+ YQSLHT V GPDG LE+QIRT +MH AE+G+AAHW YKE
Sbjct: 319 IPGRFKDYIAMPKPNMYQSLHTTVVGPDGEPLEIQIRTHEMHNIAEYGIAAHWKYKE--- 375
Query: 304 KLQSISSMDESDIE 317
IS+ E IE
Sbjct: 376 ---GISNSKEDKIE 386
>gi|302784096|ref|XP_002973820.1| hypothetical protein SELMODRAFT_100367 [Selaginella moellendorffii]
gi|300158152|gb|EFJ24775.1| hypothetical protein SELMODRAFT_100367 [Selaginella moellendorffii]
Length = 542
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 149 AGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 208
G+ L+++ E L+K L S I L R K+L+SI++KM++K I ++YD
Sbjct: 208 GGVVLSAI----EQLDKALRKSKIKIED----LCGRSKTLFSIYTKMKKKGRSIDEIYDV 259
Query: 209 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 268
R LR++V D+ CY L+ VH+LW I G+ DYI PK +GYQSLHT V
Sbjct: 260 RGLRLIVKDEAD---------CYKALEFVHKLWDHIPGKLKDYIKQPKANGYQSLHTVVS 310
Query: 269 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 307
G DG LEVQIRT++MH +AE G+AAHW YKE + S
Sbjct: 311 GKDGLPLEVQIRTKEMHSHAEFGMAAHWRYKEGNDTKHS 349
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
AL K +A ETL I +A+RLG+W+ KAE+EDLCF L P ++++ A L
Sbjct: 149 ALAAEKQNRIASETLEILVPIANRLGIWSWKAEMEDLCFKYLNPTEYQELAAKL 202
>gi|429735228|ref|ZP_19269197.1| GTP diphosphokinase [Selenomonas sp. oral taxon 138 str. F0429]
gi|429159340|gb|EKY01855.1| GTP diphosphokinase [Selenomonas sp. oral taxon 138 str. F0429]
Length = 743
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 18/158 (11%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L
Sbjct: 235 GIKAEIKGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGYPLEIQIRTKAMHQVSEFGVAAH 344
Query: 296 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 328
W YKE G +SI + DE+D + S SL K+ DD
Sbjct: 345 WKYKEAG---RSIGATDENDQKMSWLRQMVSLQKEYDD 379
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
K + +A+ETL ++ LA+RLG+ +K ELEDLC L+P+ +
Sbjct: 161 KRQRIAKETLEVYAPLANRLGISNIKVELEDLCLRYLEPEAY 202
>gi|384084494|ref|ZP_09995669.1| (p)ppGpp synthetase I SpoT/RelA [Acidithiobacillus thiooxidans ATCC
19377]
Length = 759
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 89/146 (60%), Gaps = 11/146 (7%)
Query: 160 EEALEK--ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 217
+EA++K + L+ + G E +S R K +YSI+SKM++K + + D A RV+V D
Sbjct: 245 KEAVQKIEQALLDRLHQEGFEAQVSGREKHVYSIYSKMQKKGMAFSSILDLHAFRVIVAD 304
Query: 218 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 277
+ CY +L I+H L+ PI G F DYI PK +GYQSLHT + GP G +EV
Sbjct: 305 ---------VDTCYRVLGIIHSLYRPIPGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEV 355
Query: 278 QIRTQKMHEYAEHGLAAHWLYKETGN 303
QIRT+ MH AE G+AAHWLYK N
Sbjct: 356 QIRTEDMHRVAEAGVAAHWLYKTGMN 381
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 52
+ P K R +++ETL I+ +A RLG+ A++ ELE+L F+ L P+
Sbjct: 185 MTPEKRRRISRETLDIYAPIAQRLGIHAIRIELEELAFSHLYPK 228
>gi|456966424|gb|EMG08042.1| RelA/SpoT domain protein, partial [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 385
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 IYKE 349
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 157 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
>gi|374334752|ref|YP_005091439.1| GTP pyrophosphokinase [Oceanimonas sp. GK1]
gi|372984439|gb|AEY00689.1| GTP pyrophosphokinase [Oceanimonas sp. GK1]
Length = 736
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM++K++ +++D RA+RVV +Q CY+ L
Sbjct: 241 GVEAEVYGRPKHIYSIWRKMQKKNLDFDELFDVRAVRVVT---------HRLQDCYAALG 291
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 292 IVHTQWRHIPREFDDYVANPKPNGYQSIHTVVIGPEGKTVEIQIRTDQMHQDAELGVAAH 351
Query: 296 WLYKE 300
W YKE
Sbjct: 352 WKYKE 356
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
VA+E I+ LA+RLG+ LK ELEDL F L P+ ++++
Sbjct: 171 VAKEIANIYAPLANRLGIGQLKWELEDLSFRYLHPETYKRI 211
>gi|385799597|ref|YP_005836001.1| (p)ppGpp synthetase I SpoT/RelA [Halanaerobium praevalens DSM 2228]
gi|309388961|gb|ADO76841.1| (p)ppGpp synthetase I, SpoT/RelA [Halanaerobium praevalens DSM
2228]
Length = 715
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 92/142 (64%), Gaps = 11/142 (7%)
Query: 159 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK 218
+EA+EK L S+ +E + R K LYSI++KM+RK+V ++YD A+RV+V +
Sbjct: 212 IKEAIEKLNLTLESH--SIEADIYGRPKHLYSIYNKMKRKEVEFDEIYDLTAVRVLVEN- 268
Query: 219 NGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 278
++ CY +L ++H +W P+ G F DYI PK + YQSLHT V P+G LEVQ
Sbjct: 269 --------VKECYEVLGVLHEIWKPMPGRFKDYIAMPKSNMYQSLHTTVIAPNGDPLEVQ 320
Query: 279 IRTQKMHEYAEHGLAAHWLYKE 300
IRT +MH+ AE+G+AAHW YKE
Sbjct: 321 IRTYEMHKTAEYGIAAHWRYKE 342
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
L AK + ++ET+ I+ LA RLG+ +K ELEDL F L+P ++
Sbjct: 149 LKKAKRKEKSRETIEIYAPLAHRLGMSKIKWELEDLSFRYLKPDMY 194
>gi|427405631|ref|ZP_18895836.1| RelA/SpoT family protein [Selenomonas sp. F0473]
gi|425708472|gb|EKU71511.1| RelA/SpoT family protein [Selenomonas sp. F0473]
Length = 742
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 18/158 (11%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L
Sbjct: 235 GIEAEIKGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT MH +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGDPLEIQIRTHAMHRISEFGVAAH 344
Query: 296 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 328
W YKE G +S + DESD + S SL K+ DD
Sbjct: 345 WKYKEAG---KSTGATDESDQKMSWLRQMVSLQKEYDD 379
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
K + +A ETL ++ LA+RLG+ +K ELEDLC L+P+ +
Sbjct: 161 KRQRIAHETLEVYAPLANRLGISNIKIELEDLCLRYLEPEAY 202
>gi|349574920|ref|ZP_08886850.1| GTP diphosphokinase [Neisseria shayeganii 871]
gi|348013452|gb|EGY52366.1| GTP diphosphokinase [Neisseria shayeganii 871]
Length = 736
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + +YD RA+R++V +I CY+ L +VH L
Sbjct: 257 VAGRPKHIYSIYRKMEKKKLDFDGLYDIRAVRILVD---------SIPECYTTLGLVHSL 307
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT +MH++ E G+AAHW YKE
Sbjct: 308 WQPVPGEFDDYIANPKGNGYKSLHTVIIGPEDKGVEVQIRTFEMHQFNEFGVAAHWRYKE 367
Query: 301 TGN 303
G
Sbjct: 368 GGK 370
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 1 MVFEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
M F S P K RA+A+ETL I+ LA+RLG+W LK +LEDL F +P+ ++++
Sbjct: 166 MQFVGSTPDSPEK-RALAKETLDIFAPLANRLGVWQLKWQLEDLGFRHYRPEEYKRI 221
>gi|114777339|ref|ZP_01452336.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
gi|114552121|gb|EAU54623.1| GTP pyrophosphokinase [Mariprofundus ferrooxydans PV-1]
Length = 646
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+SKM KD +++D ALR+ V I CY++L
Sbjct: 163 GIDARVYGRPKHIYSIWSKMTHKDKQFSELFDVLALRITV---------TTIAECYTVLG 213
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H W I EFDDYI N KP+GYQSLHTAV GP+G +E+QIRT+ MHE+AE G+AAH
Sbjct: 214 LIHGRWHHIPKEFDDYIANTKPNGYQSLHTAVYGPEGKPVEIQIRTKAMHEFAEFGVAAH 273
Query: 296 WLYKE 300
W YKE
Sbjct: 274 WRYKE 278
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 10/81 (12%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVG 72
+ +A E+L I+ +A+RLG+ LK ELEDL F LQP+ +++ +A+M + R
Sbjct: 91 KRIASESLEIFSPIANRLGIGQLKWELEDLSFRYLQPETYKR----IANMLEEKRGGRET 146
Query: 73 YSRR----ITTIVSSPPLDER 89
Y ++ I T+++S +D R
Sbjct: 147 YIKQVVTEINTLLNSSGIDAR 167
>gi|88858178|ref|ZP_01132820.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudoalteromonas
tunicata D2]
gi|88819795|gb|EAR29608.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Pseudoalteromonas
tunicata D2]
Length = 721
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM +K+ +++D RALRVVV DK IQ CY+ L
Sbjct: 234 GIGAQVYGRPKHIYSIYKKMYKKNYEFDQLFDIRALRVVV-DK--------IQDCYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYIATPKTNGYQSIHTVVVGPEGKTVEIQIRTHEMHQDAELGVAAH 344
Query: 296 WLYKE 300
WLYKE
Sbjct: 345 WLYKE 349
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ET I+ LA+RLG+ LK ELEDL F L P ++K+
Sbjct: 165 AKETANIFAPLANRLGIGQLKWELEDLSFRYLHPDTYKKI 204
>gi|170727691|ref|YP_001761717.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella woodyi ATCC 51908]
gi|169813038|gb|ACA87622.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella woodyi ATCC 51908]
Length = 735
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWKKMKGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 301
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
>gi|401564457|ref|ZP_10805350.1| GTP diphosphokinase [Selenomonas sp. FOBRC6]
gi|400188859|gb|EJO22995.1| GTP diphosphokinase [Selenomonas sp. FOBRC6]
Length = 743
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 18/158 (11%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+R + ++++YD A+RV+V +++ CY +L
Sbjct: 235 GIKAEIKGRAKHFYSIYRKMKRDNKSVNEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT+ MH+ +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-THGYPLEIQIRTKAMHQVSEFGVAAH 344
Query: 296 WLYKETGNKLQSISSMDESDIEAS-----SSLSKDTDD 328
W YKE G +SI + DE+D + S SL K+ DD
Sbjct: 345 WKYKEAG---RSIGATDETDQKMSWLRQMVSLQKEYDD 379
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
K +A+ETL ++ LA+RLG+ +K ELEDLC L+P+ +
Sbjct: 161 KRHRIAKETLEVYAPLANRLGISNIKVELEDLCLRYLEPEAY 202
>gi|383764936|ref|YP_005443918.1| GTP pyrophosphokinase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381385204|dbj|BAM02021.1| GTP pyrophosphokinase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 825
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 10/134 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM RK VG ++YD RV+V + CY+ L
Sbjct: 331 GIHAEVYGRPKHIYSIYRKMERKGVGFDQIYDVHGFRVIVD---------TVAECYAALG 381
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ-GPDGSALEVQIRTQKMHEYAEHGLAA 294
++H +W PI GEFDDYI NPK + YQSLHTAV+ DG +E+QIRT++MHE AE G+AA
Sbjct: 382 VIHTMWHPIPGEFDDYIANPKNNMYQSLHTAVRIKKDGRPVEIQIRTREMHEKAELGVAA 441
Query: 295 HWLYKETGNKLQSI 308
HW YKE + + +
Sbjct: 442 HWQYKEQAHHSKDV 455
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
K R +A+ETL + +A+RLG+W +K+ELEDL F L P +++++ + S R ++
Sbjct: 257 KRRRIARETLDYYAPIANRLGIWRIKSELEDLSFRYLNPTSYKEIKNAIQQKESDRQKL 315
>gi|381191174|ref|ZP_09898685.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
sp. RL]
gi|380450963|gb|EIA38576.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
sp. RL]
Length = 727
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 20/193 (10%)
Query: 140 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 199
+ + +++Q A L +A +E L+ S + G EVT R K LYSI+ KM R+
Sbjct: 214 EARERLIQKAIHLLQETLARDELLQ-------SQLQGFEVT--GRPKHLYSIWKKMEREG 264
Query: 200 VGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNP 255
+ ++YD A+RV++ K T A+ Q CY +L +VH LW PI G DYI P
Sbjct: 265 KTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVP 324
Query: 256 KPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK-------ETGNKLQSI 308
KP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLYK E ++ +
Sbjct: 325 KPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLYKEGLTDPEEVKRRVSWL 384
Query: 309 SSMDESDIEASSS 321
S+ E E SSS
Sbjct: 385 KSIQEWQKEFSSS 397
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K + +AQETL I+ LA RLG+ LK ELEDL F L P+ F + A + + R
Sbjct: 157 MPPEKQKRIAQETLEIYAPLAHRLGMGQLKWELEDLSFRYLHPEAFASLSARIQATQEAR 216
Query: 69 NRV 71
R+
Sbjct: 217 ERL 219
>gi|84623294|ref|YP_450666.1| ATP:GTP 3'-pyrophosphotransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84367234|dbj|BAE68392.1| ATP:GTP 3'-pyrophosphotranferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 727
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 11/149 (7%)
Query: 157 VACEEALE--KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
VA E LE K L + G+ +S R K +YSI+ KM++K + ++YD RA+RV+
Sbjct: 220 VARERYLEAVKRTLSAALAQQGLRADVSGRPKHIYSIWRKMQKKRLSFDQLYDIRAVRVM 279
Query: 215 VGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
V D + CY+ L VH LW P+ EFDDYI PK + Y+SLHTAV G +G
Sbjct: 280 VDD---------VAACYAALGAVHSLWAPVPSEFDDYIARPKANDYRSLHTAVVGQEGRT 330
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
+E+QIRT +MH AE G+AAHW YKE G
Sbjct: 331 IEIQIRTHEMHAQAELGVAAHWKYKEGGK 359
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 16 AVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+AQ T I LA+RLG+W +K ELEDL F L+P +R++
Sbjct: 170 ALAQLTRDIHAPLANRLGIWQVKWELEDLAFRHLEPDTYRRI 211
>gi|46199657|ref|YP_005324.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB27]
gi|384431896|ref|YP_005641256.1| (p)ppGpp synthetase I SpoT/RelA [Thermus thermophilus SG0.5JP17-16]
gi|46197283|gb|AAS81697.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB27]
gi|333967364|gb|AEG34129.1| (p)ppGpp synthetase I, SpoT/RelA [Thermus thermophilus
SG0.5JP17-16]
Length = 727
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 140 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 199
+ + +++Q A L +A +E L+ S + G EVT R K LYSI+ KM R+
Sbjct: 214 EARERLIQKAIHLLQETLARDELLQ-------SQLQGFEVT--GRPKHLYSIWKKMEREG 264
Query: 200 VGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNP 255
+ ++YD A+RV++ K T A+ Q CY +L +VH LW PI G DYI P
Sbjct: 265 KTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVP 324
Query: 256 KPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
KP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 325 KPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLYKE 369
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K + +AQETL I+ LA RLG+ LK ELEDL F L P+ F + A + + R
Sbjct: 157 MPPEKQKRIAQETLEIYAPLAHRLGMGQLKWELEDLSFRYLHPEAFASLSARIQATQEAR 216
Query: 69 NRV 71
R+
Sbjct: 217 ERL 219
>gi|86158972|ref|YP_465757.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775483|gb|ABC82320.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 746
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
GM+ +S R+K +YSI+ KMR+ DV ++ D RV+V + CY L
Sbjct: 250 GMKADVSGRVKHVYSIYRKMRQLDVDFEQIQDVIGFRVIVD---------TVAECYESLG 300
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ G F DYI PKP+ YQSLHT V GP G +EVQIRT++MH AE G+AAH
Sbjct: 301 FVHSLWKPVPGRFKDYIAIPKPNLYQSLHTTVVGPAGERIEVQIRTREMHRIAEEGVAAH 360
Query: 296 WLYKETG 302
W YKE G
Sbjct: 361 WAYKEKG 367
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+ P +A+ETL I+ LA+RLG+ +K ELE+L F L+P + ++
Sbjct: 171 AMKPESQERIARETLDIYAPLANRLGIQWIKTELEELSFKYLRPADYSEL 220
>gi|365835926|ref|ZP_09377334.1| GTP diphosphokinase [Hafnia alvei ATCC 51873]
gi|364565046|gb|EHM42783.1| GTP diphosphokinase [Hafnia alvei ATCC 51873]
Length = 747
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 19/174 (10%)
Query: 128 KFLHDLAKSSEAQKKAKVVQDAGIALTSLV-ACEEALEKELLISTSYIPGMEVTLSSRLK 186
++LH E +K AK++ + I + EAL KE+ G++ + R K
Sbjct: 204 RYLH----PDEYKKIAKLLHERRIDREQFIDNFVEALRKEMAKE-----GVKAEIYGRPK 254
Query: 187 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246
+YSI+ KM++K + +++D RA+R+VV +Q CY+ L IVH + +
Sbjct: 255 HIYSIWRKMQKKALAFDELFDVRAVRIVV---------ERLQDCYAALGIVHTHYRHLPN 305
Query: 247 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAHW YKE
Sbjct: 306 EFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELGVAAHWKYKE 359
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 167 PEEERVLAAKECFNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|317484827|ref|ZP_07943721.1| RelA/SpoT family protein [Bilophila wadsworthia 3_1_6]
gi|345890061|ref|ZP_08841020.1| hypothetical protein HMPREF0178_03794 [Bilophila sp. 4_1_30]
gi|316923921|gb|EFV45113.1| RelA/SpoT family protein [Bilophila wadsworthia 3_1_6]
gi|345038932|gb|EGW43306.1| hypothetical protein HMPREF0178_03794 [Bilophila sp. 4_1_30]
Length = 738
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 97/152 (63%), Gaps = 15/152 (9%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E ++S++ I G T+ R+K +YSI+ KM +++ + ++D A RV+V D
Sbjct: 232 EGILSSNQIEG---TVWGRIKHIYSIYKKMTEQNLTLDDMHDILAFRVIVKD-------- 280
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
++ CY++L +VH W P+ G F DYI PK +GYQSLHT V GP+G +E+QIRT++MH
Sbjct: 281 -VRDCYAVLGLVHAQWKPVPGRFKDYISMPKANGYQSLHTTVIGPEGERIEIQIRTEEMH 339
Query: 286 EYAEHGLAAHWLYKETGNKLQSISSMDESDIE 317
AEHG+A+HWLYKE + ++S D + E
Sbjct: 340 RLAEHGVASHWLYKE---RHHAVSVKDAPEFE 368
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K + +AQET+ I+ LA+RLGL LK ELE L F + P ++ ++ S W N+V
Sbjct: 165 KRQRIAQETMDIYVPLANRLGLHRLKLELEGLSFKYIHPDVYAQI-----SDWLESNQVV 219
Query: 73 YSRRITTIVS 82
+ I I++
Sbjct: 220 ERQLIAKIIA 229
>gi|163750001|ref|ZP_02157245.1| GTP pyrophosphokinase [Shewanella benthica KT99]
gi|161330275|gb|EDQ01256.1| GTP pyrophosphokinase [Shewanella benthica KT99]
Length = 734
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 80/118 (67%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 249 GRPKHIYSIWKKMKGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWH 299
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 300 HIPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 357
>gi|421538642|ref|ZP_15984817.1| GTP-pyrophosphokinase [Neisseria meningitidis 93003]
gi|402316312|gb|EJU51861.1| GTP-pyrophosphokinase [Neisseria meningitidis 93003]
Length = 737
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVDN---------IPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|310829081|ref|YP_003961438.1| (p)ppGpp synthetase I [Eubacterium limosum KIST612]
gi|308740815|gb|ADO38475.1| (p)ppGpp synthetase I [Eubacterium limosum KIST612]
Length = 725
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ KM+ ++ ++YD A+RV+V +++ CY +L
Sbjct: 234 GIEAKIYGRSKHFYSIYRKMKAQNRNFDEIYDLIAVRVIVD---------SVKDCYGVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W PI G F DYI PKP+ YQS+HT V GP+G E+QIRT++MHE AE+G+AAH
Sbjct: 285 IVHTQWKPIPGRFKDYIAMPKPNMYQSIHTTVIGPNGDPFEIQIRTKEMHETAEYGIAAH 344
Query: 296 WLYKE 300
W YKE
Sbjct: 345 WKYKE 349
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 491 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 550
+ E NK+ LR +L W+++L + L ++ N E V V P G+
Sbjct: 355 NNKELRYENKMSWLRQILEWQKELDNANDLVETIKVDLLN---------EEVYVFTPQGK 405
Query: 551 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
++ L GS D A + VG VNG++V N L +GDIVE+
Sbjct: 406 VVELPMGSCPLDFAYRIHSDVGNSCVGAKVNGKIVPLNYTLNNGDIVEI 454
>gi|317491025|ref|ZP_07949461.1| RelA/SpoT family protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920572|gb|EFV41895.1| RelA/SpoT family protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 747
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 19/174 (10%)
Query: 128 KFLHDLAKSSEAQKKAKVVQDAGIALTSLV-ACEEALEKELLISTSYIPGMEVTLSSRLK 186
++LH E +K AK++ + I + EAL KE+ G++ + R K
Sbjct: 204 RYLH----PDEYKKIAKLLHERRIDREQFIDNFVEALRKEMAKE-----GVKAEIYGRPK 254
Query: 187 SLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246
+YSI+ KM++K + +++D RA+R+VV +Q CY+ L IVH + +
Sbjct: 255 HIYSIWRKMQKKALAFDELFDVRAVRIVV---------ERLQDCYAALGIVHTHYRHLPN 305
Query: 247 EFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAHW YKE
Sbjct: 306 EFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELGVAAHWKYKE 359
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 167 PEEERVLAAKECFNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|427418396|ref|ZP_18908579.1| (p)ppGpp synthetase, RelA/SpoT family [Leptolyngbya sp. PCC 7375]
gi|425761109|gb|EKV01962.1| (p)ppGpp synthetase, RelA/SpoT family [Leptolyngbya sp. PCC 7375]
Length = 763
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 9/135 (6%)
Query: 179 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 238
V +SSR K LYSI+ KM+R+ H++YD A+R++V K CY L +VH
Sbjct: 258 VEISSRPKHLYSIYRKMQRQKKDFHQIYDIAAVRIIVSTKVE---------CYRALAVVH 308
Query: 239 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 298
+ PI G F DYI PK + YQSLHTAV G G +EVQIRT +MH AE+G+AAHW Y
Sbjct: 309 DQFKPIPGRFKDYIGLPKANRYQSLHTAVIGEQGRPIEVQIRTMEMHHVAEYGIAAHWKY 368
Query: 299 KETGNKLQSISSMDE 313
KETGN +++ DE
Sbjct: 369 KETGNSNTKVNAEDE 383
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
LPP K A ET+ I+ LA+RLG+ +K ELEDL F L+ +++++
Sbjct: 176 LPPEKQVQKACETIEIFAPLANRLGIGRMKWELEDLSFKYLEESSYQEIK 225
>gi|332711840|ref|ZP_08431770.1| (p)ppGpp synthetase, RelA/SpoT family [Moorea producens 3L]
gi|332349168|gb|EGJ28778.1| (p)ppGpp synthetase, RelA/SpoT family [Moorea producens 3L]
Length = 754
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 82/124 (66%), Gaps = 9/124 (7%)
Query: 179 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 238
V +SSR K LY I+ KM+R++ G H++YD A+RV+V K + CY L +VH
Sbjct: 251 VDISSRPKHLYGIYQKMQRQNKGFHEIYDIAAMRVIVETK---------EECYRALAVVH 301
Query: 239 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 298
L+ PI G F DYI PKP+ YQSLHT V G +G +EVQIRT +MH AE G+AAHW Y
Sbjct: 302 DLFRPIPGRFKDYIGLPKPNRYQSLHTGVIGFNGRPIEVQIRTLEMHHVAEWGIAAHWKY 361
Query: 299 KETG 302
KETG
Sbjct: 362 KETG 365
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K +AQET I+ LA+RLG+ K ELEDL F L+ +R++++ +A S R
Sbjct: 169 LKPQKQGQIAQETRDIFAPLANRLGIGCFKWELEDLAFKYLERDAYREIQSLVAERRSDR 228
Query: 69 NR 70
+
Sbjct: 229 EQ 230
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 498 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 557
+ K+ LR +L W++ L+ + N + E V V P+G+++ L G
Sbjct: 376 DEKLTWLRQLLEWQKDLKDAQEYME---------NIKDNLFDEDVYVFTPDGDVVALSRG 426
Query: 558 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
+TA D A + VG V VNG+ + + LK+GDIVE+
Sbjct: 427 ATAVDFAYRIHTEVGNHCAGVRVNGEWRVLDCPLKNGDIVEI 468
>gi|126175347|ref|YP_001051496.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS155]
gi|386342093|ref|YP_006038459.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS117]
gi|125998552|gb|ABN62627.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS155]
gi|334864494|gb|AEH14965.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS117]
Length = 736
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 9/131 (6%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKEGN 360
Query: 303 NKLQSISSMDE 313
N S +E
Sbjct: 361 NHSGKQSGYEE 371
>gi|206901091|ref|YP_002250691.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Dictyoglomus
thermophilum H-6-12]
gi|206740194|gb|ACI19252.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Dictyoglomus
thermophilum H-6-12]
Length = 727
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K LYSI+ KM R+ + I ++YD +RV+V + + CY +L
Sbjct: 229 GINAEVTGRAKHLYSIYQKMLRRGIEIEEMYDLLGVRVIVNSE---------KECYEVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI N K + YQSLHT V DG LEVQIRT +MH AE+G+AAH
Sbjct: 280 IIHNLWKPVPGRFKDYIANKKSNNYQSLHTTVIAMDGKPLEVQIRTWEMHRVAEYGIAAH 339
Query: 296 WLYKETGNK---LQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQK 339
WLYKE K + S +E L+ D + + +DLF++
Sbjct: 340 WLYKEEIKKPDYFEEKLSWLRQLLEWQKELADDQEFLESIKSDLFER 386
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
K + +A+ETL I+ LA RLG+W +K LEDL F L+P+ + + +A R +
Sbjct: 155 KQKRIAKETLEIYAPLAHRLGVWDIKWRLEDLAFRYLEPEKYHYVAKKVAETRKEREK 212
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
K+ LR +L W+++L + +S S + + V P G+I+ L GST
Sbjct: 355 KLSWLRQLLEWQKELADDQEFLES---------IKSDLFEREIYVFTPKGDIIALPQGST 405
Query: 560 AADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
D A +VG + VNG++V N LK+GDIVE+
Sbjct: 406 PIDFAYAIHTEVGHRCRGAKVNGKIVPLNYVLKNGDIVEI 445
>gi|261381004|ref|ZP_05985577.1| GTP diphosphokinase [Neisseria subflava NJ9703]
gi|284796037|gb|EFC51384.1| GTP diphosphokinase [Neisseria subflava NJ9703]
Length = 737
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|55981686|ref|YP_144983.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Thermus
thermophilus HB8]
gi|55773099|dbj|BAD71540.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp
synthase) [Thermus thermophilus HB8]
Length = 727
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 140 QKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKD 199
+ + +++Q A L +A +E L+ S + G EVT R K LYSI+ KM R+
Sbjct: 214 EARERLIQRAIHLLQETLARDELLQ-------SQLQGFEVT--GRPKHLYSIWKKMEREG 264
Query: 200 VGIHKVYDARALRVVVGDKNG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNP 255
+ ++YD A+RV++ K T A+ Q CY +L +VH LW PI G DYI P
Sbjct: 265 KTLEQIYDLLAVRVILDPKPAPTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVP 324
Query: 256 KPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
KP+GYQSLHT V +G LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 325 KPNGYQSLHTTVIALEGLPLEVQIRTREMHRVAEYGIAAHWLYKE 369
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K + +AQETL I+ LA RLG+ LK ELEDL F L P+ F + A + + R
Sbjct: 157 MPPEKQKRIAQETLEIYAPLAHRLGMGQLKWELEDLSFRYLHPEAFASLSARIQATQEAR 216
Query: 69 NRVGYSRRITTIVSSPPLDERTASDDESF--TTFDEHVLSM 107
R+ R I + + DE S + F T +H+ S+
Sbjct: 217 ERL-IQRAIHLLQETLARDELLQSQLQGFEVTGRPKHLYSI 256
>gi|294141949|ref|YP_003557927.1| GTP pyrophosphokinase [Shewanella violacea DSS12]
gi|293328418|dbj|BAJ03149.1| GTP pyrophosphokinase [Shewanella violacea DSS12]
Length = 734
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 9/117 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 RPKHIYSIWKKMEGKDLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWHH 300
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 IPREFDDYVANPKPNGYQSIHTIVMGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 357
>gi|241759907|ref|ZP_04758007.1| GTP pyrophosphokinase [Neisseria flavescens SK114]
gi|241319915|gb|EER56311.1| GTP pyrophosphokinase [Neisseria flavescens SK114]
Length = 737
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|339058187|ref|ZP_08648709.1| GTP pyrophosphokinase2C (p)ppGpp synthetase I [gamma
proteobacterium IMCC2047]
gi|330720606|gb|EGG98868.1| GTP pyrophosphokinase2C (p)ppGpp synthetase I [gamma
proteobacterium IMCC2047]
Length = 748
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ ++ R K +YSI KM K + +VYDA A+RV+V P ++ CY+ L +
Sbjct: 259 IDAVVTGRAKHIYSIARKMDNKHIDFDQVYDASAVRVLV---------PDVKDCYATLGV 309
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW + EFDDYI PKP+GY+SLHTAV GP+G A+EVQIRT MHE AE G+ +HW
Sbjct: 310 VHSLWRLVPNEFDDYIAIPKPNGYRSLHTAVIGPEGKAMEVQIRTHAMHEEAEFGVCSHW 369
Query: 297 LYKETGNKLQS 307
YK K +S
Sbjct: 370 QYKGADRKGKS 380
>gi|452202850|ref|YP_007482983.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi DCMB5]
gi|452109909|gb|AGG05641.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi DCMB5]
Length = 728
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 232
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 233 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 292
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 293 AAHWLYKETGNK 304
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
AL P K R++A+ET+ I+ LA RLG+W LK +LEDL F L P+ +R++
Sbjct: 159 ALSPEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPRHYRQV 208
>gi|73747961|ref|YP_307200.1| GTP pyrophosphokinase [Dehalococcoides sp. CBDB1]
gi|289431960|ref|YP_003461833.1| (p)ppGpp synthetase I SpoT/RelA [Dehalococcoides sp. GT]
gi|452204331|ref|YP_007484460.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi BTF08]
gi|73659677|emb|CAI82284.1| GTP pyrophosphokinase [Dehalococcoides sp. CBDB1]
gi|288945680|gb|ADC73377.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalococcoides sp. GT]
gi|452111387|gb|AGG07118.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Dehalococcoides
mccartyi BTF08]
Length = 728
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 232
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 233 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 292
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 293 AAHWLYKETGNK 304
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
AL P K R++A+ET+ I+ LA RLG+W LK +LEDL F L P+ +R++
Sbjct: 159 ALSPEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPRHYRQV 208
>gi|407803935|ref|ZP_11150766.1| GTP pyrophosphokinase [Alcanivorax sp. W11-5]
gi|407022185|gb|EKE33941.1| GTP pyrophosphokinase [Alcanivorax sp. W11-5]
Length = 747
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
+V + R K +YSI+ KM++K + ++VYD RA+R++V P ++ CY+ L +V
Sbjct: 258 DVQVDGRAKHIYSIWRKMQKKHLDFYEVYDVRAVRILV---------PEVRDCYAALGVV 308
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H LW + EFDDYI PK +GYQSLHTAV GPD LEVQIRT +MH+ AE G+ AHW
Sbjct: 309 HSLWQHVPKEFDDYIATPKENGYQSLHTAVVGPDRKMLEVQIRTYEMHDDAELGVCAHWH 368
Query: 298 YKETGNK 304
YKE +
Sbjct: 369 YKEGARR 375
>gi|260771910|ref|ZP_05880828.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio metschnikovii
CIP 69.14]
gi|260613202|gb|EEX38403.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio metschnikovii
CIP 69.14]
Length = 739
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 89/127 (70%), Gaps = 9/127 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM++K++ +++D RA+R++ DK +Q CY+ L IVH
Sbjct: 248 VSGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII-ADK--------LQDCYAALGIVHTK 298
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ + GEFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAHW YKE
Sbjct: 299 YKHLPGEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAHWKYKE 358
Query: 301 TGNKLQS 307
+ +S
Sbjct: 359 GASTARS 365
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLS 218
>gi|147668657|ref|YP_001213475.1| (p)ppGpp synthetase I SpoT/RelA [Dehalococcoides sp. BAV1]
gi|146269605|gb|ABQ16597.1| (p)ppGpp synthetase I, SpoT/RelA [Dehalococcoides sp. BAV1]
Length = 728
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRR---KDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYS 232
G+ V +S R K LYSI+ KM + + +YD ALRV+V D I CY
Sbjct: 238 GLNVEVSGRPKHLYSIYQKMEKYASQGKQFEDIYDVLALRVLVND---------IPDCYH 288
Query: 233 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGL 292
+ IVH LW PI G FDDYI NPKP+GYQSLHTAV + LEVQ+RT +MH AE+G+
Sbjct: 289 AVGIVHSLWHPIPGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGV 348
Query: 293 AAHWLYKETGNK 304
AAHW YK G +
Sbjct: 349 AAHWRYKTAGKE 360
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
AL P K R++A+ET+ I+ LA RLG+W LK +LEDL F L P+ +R++
Sbjct: 159 ALSPEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYLDPRHYRQV 208
>gi|225076079|ref|ZP_03719278.1| hypothetical protein NEIFLAOT_01111 [Neisseria flavescens
NRL30031/H210]
gi|224952578|gb|EEG33787.1| hypothetical protein NEIFLAOT_01111 [Neisseria flavescens
NRL30031/H210]
Length = 737
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|297614536|gb|ADI48567.1| putative (p)ppGpp synthetase II [uncultured bacterium fss6]
Length = 673
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 92/147 (62%), Gaps = 18/147 (12%)
Query: 156 LVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVV 215
L A ++AL+ E G++ T+ R K +YSI+ KM++K + ++YD RA+R++
Sbjct: 172 LQALQQALDDE---------GVQATVYGRPKHIYSIWRKMQKKHLNFDQLYDIRAVRIIT 222
Query: 216 GDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSAL 275
+++ CY+ L +VH LW I EFDDYI PK +GYQS+HT V GP +
Sbjct: 223 ---------DSLKDCYAALGVVHSLWRHIASEFDDYIATPKANGYQSIHTVVLGPQDKHV 273
Query: 276 EVQIRTQKMHEYAEHGLAAHWLYKETG 302
E+QIRTQ MH+ AE G+AAHW+YKE G
Sbjct: 274 EIQIRTQAMHDDAELGVAAHWMYKEGG 300
>gi|242280235|ref|YP_002992364.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio salexigens DSM 2638]
gi|242123129|gb|ACS80825.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio salexigens DSM
2638]
Length = 723
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 85/123 (69%), Gaps = 9/123 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
T+ R K +YSI KM+R+++ + +VYD A RV+V +++ CYS+L +VH
Sbjct: 232 TIYGRTKHIYSIHKKMQRQNLSLDQVYDIIAFRVIV---------ESVKDCYSVLGLVHS 282
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
+W PI G+F DYI PK + YQSLHT V GP+G +E+QIRT++M + AE+G+AAHW YK
Sbjct: 283 MWKPISGKFKDYISIPKANMYQSLHTTVIGPEGERIEIQIRTEEMQQVAEYGVAAHWQYK 342
Query: 300 ETG 302
E+G
Sbjct: 343 ESG 345
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 3 FEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
F+ SY K +AQET+ I+ LA+RLGL+ +K +LEDLC L+P +++ +
Sbjct: 149 FQKSY-----KQLLIAQETMDIYSPLANRLGLYMVKRDLEDLCLYYLKPDVYQDI 198
>gi|418288904|ref|ZP_12901320.1| GTP diphosphokinase [Neisseria meningitidis NM233]
gi|418291162|ref|ZP_12903210.1| GTP diphosphokinase [Neisseria meningitidis NM220]
gi|372200342|gb|EHP14431.1| GTP diphosphokinase [Neisseria meningitidis NM220]
gi|372200758|gb|EHP14784.1| GTP diphosphokinase [Neisseria meningitidis NM233]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|304386781|ref|ZP_07369048.1| GTP diphosphokinase [Neisseria meningitidis ATCC 13091]
gi|304339131|gb|EFM05218.1| GTP diphosphokinase [Neisseria meningitidis ATCC 13091]
Length = 773
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V I CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TIPECYTTLGIVHSL 344
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 301 TG 302
G
Sbjct: 405 GG 406
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 217 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 259
>gi|292900404|ref|YP_003539773.1| GTP pyrophosphokinase [Erwinia amylovora ATCC 49946]
gi|428784152|ref|ZP_19001644.1| GTP pyrophosphokinase [Erwinia amylovora ACW56400]
gi|291200252|emb|CBJ47380.1| GTP pyrophosphokinase [Erwinia amylovora ATCC 49946]
gi|312171322|emb|CBX79581.1| GTP pyrophosphokinase [Erwinia amylovora ATCC BAA-2158]
gi|426277291|gb|EKV55017.1| GTP pyrophosphokinase [Erwinia amylovora ACW56400]
Length = 744
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAIRIV---------AERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPQGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKETG 302
W YKE G
Sbjct: 355 WKYKEGG 361
>gi|149183963|ref|ZP_01862340.1| GTP pyrophosphokinase [Bacillus sp. SG-1]
gi|148848326|gb|EDL62599.1| GTP pyrophosphokinase [Bacillus sp. SG-1]
Length = 507
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I
Sbjct: 11 IEADISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVD---------SIKDCYAVLGI 61
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAHW
Sbjct: 62 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTTEMHQIAEYGVAAHW 121
Query: 297 LYKETGN 303
YKE N
Sbjct: 122 AYKEGQN 128
>gi|255066124|ref|ZP_05317979.1| GTP diphosphokinase [Neisseria sicca ATCC 29256]
gi|255049669|gb|EET45133.1| GTP diphosphokinase [Neisseria sicca ATCC 29256]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|261364097|ref|ZP_05976980.1| GTP diphosphokinase [Neisseria mucosa ATCC 25996]
gi|288567664|gb|EFC89224.1| GTP diphosphokinase [Neisseria mucosa ATCC 25996]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|156741205|ref|YP_001431334.1| (p)ppGpp synthetase I SpoT/RelA [Roseiflexus castenholzii DSM
13941]
gi|156232533|gb|ABU57316.1| (p)ppGpp synthetase I, SpoT/RelA [Roseiflexus castenholzii DSM
13941]
Length = 771
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 98/176 (55%), Gaps = 20/176 (11%)
Query: 134 AKSSEAQKKAKVVQDAGIALTSLVA--CEEALEKELLISTSYIPGMEVTLSSRLKSLYSI 191
AK E ++ + +DA L V + LEKE G++ ++ R K +YSI
Sbjct: 244 AKYQEISRQLALRRDARERLIHRVIQRLRQVLEKE---------GIKADITGRPKHIYSI 294
Query: 192 FSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDY 251
+ KM RK V + ++YD A+RV+V + CY +L +VH W P+ GEFDDY
Sbjct: 295 YRKMERKGVSLDQIYDQLAVRVIVD---------TVADCYRVLGLVHATWPPVPGEFDDY 345
Query: 252 IVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQS 307
I PK S YQSLHT V P G E+QIRT +MHE AE G+AAHW YKE ++ +
Sbjct: 346 IAMPKESMYQSLHTTVLIPGGQPCEIQIRTHEMHEIAERGIAAHWRYKEGFGRIDA 401
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
+L + + +A+ETL I+ LA RLG+W +K ELED FAVL P ++++ LA
Sbjct: 200 SLSEERQKRMARETLEIYAPLAHRLGIWQIKWELEDRAFAVLNPAKYQEISRQLALRRDA 259
Query: 68 RNRV 71
R R+
Sbjct: 260 RERL 263
>gi|403384230|ref|ZP_10926287.1| GTP pyrophosphokinase [Kurthia sp. JC30]
Length = 730
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 15/167 (8%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ LS R K +YSI+ KM+ + +++YD A+RV+V +I+ CY++L I
Sbjct: 234 IQAELSGRPKHIYSIYKKMQSQHKQFNEIYDLLAIRVLVD---------SIKDCYAVLGI 284
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAHW
Sbjct: 285 VHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPYGDPLEVQIRTNEMHNIAEYGVAAHW 344
Query: 297 LYKETGNKLQSISSMDES-----DIEASSSLSKDTDDH-NPLDTDLF 337
YKE N S +D +I S+S D ++ L DLF
Sbjct: 345 AYKEGKNAATEKSDIDSKLTWFREILEFQSVSNDAEEFMESLKFDLF 391
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +++ETL I+ LA RLG+ A+K ELED L PQ + ++
Sbjct: 155 LPVEKQRRISKETLEIFAPLAHRLGISAIKWELEDTALRYLNPQQYYRI 203
>gi|359786287|ref|ZP_09289423.1| GTP pyrophosphokinase [Halomonas sp. GFAJ-1]
gi|359296401|gb|EHK60653.1| GTP pyrophosphokinase [Halomonas sp. GFAJ-1]
Length = 758
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 79/119 (66%), Gaps = 9/119 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM+RK + +V+D RA+R++V P + CY++L IVH
Sbjct: 259 VSGRAKHIYSIWRKMKRKRIDFSQVHDVRAVRILV---------PEVTDCYTVLGIVHSC 309
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
W + EFDDYI NPK +GYQSLHTAV GPD +E+QIRT MH+ AE G+ AHW YK
Sbjct: 310 WHHVPNEFDDYIANPKKNGYQSLHTAVMGPDNKVIEIQIRTFAMHDEAELGVCAHWRYK 368
>gi|258405012|ref|YP_003197754.1| (p)ppGpp synthetase I SpoT/RelA [Desulfohalobium retbaense DSM
5692]
gi|257797239|gb|ACV68176.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfohalobium retbaense DSM
5692]
Length = 733
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 12/136 (8%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
++ + IPG +S R K LYSIF KM+R+ + + +V+D A RV++ ++
Sbjct: 223 ILDENSIPG---RVSGRQKHLYSIFHKMQRQGLSLDQVHDLVAFRVIL---------KSV 270
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY++L ++H +W P+ G F DYI PK + YQSLHT V GPDG +E+QIRT++MHE
Sbjct: 271 RDCYAVLGLIHSIWKPVPGRFKDYISMPKANMYQSLHTTVIGPDGERIEIQIRTEEMHEI 330
Query: 288 AEHGLAAHWLYKETGN 303
E+G+AAHW YK+ N
Sbjct: 331 NEYGIAAHWKYKDGSN 346
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K R ++QET+ I+ LA+RLGL+ +K +LED+ F L+P ++ ++++ + + +
Sbjct: 154 KQRLISQETMEIYAPLANRLGLYRVKVQLEDISFQYLRPDVYYQIKSGVEQHQTLGQQ-- 211
Query: 73 YSRRITTIVSSPPLDERT 90
Y R+T ++ S LDE +
Sbjct: 212 YIERVTGLIQS-ILDENS 228
>gi|433522508|ref|ZP_20479192.1| relA/SpoT family protein [Neisseria meningitidis 61103]
gi|432258117|gb|ELL13408.1| relA/SpoT family protein [Neisseria meningitidis 61103]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 81/122 (66%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+++R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAARPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421559753|ref|ZP_16005622.1| GTP pyrophosphokinase [Neisseria meningitidis 92045]
gi|402334752|gb|EJU70031.1| GTP pyrophosphokinase [Neisseria meningitidis 92045]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|386359779|ref|YP_006058024.1| RelA/SpoT family (p)ppGpp synthetase [Thermus thermophilus JL-18]
gi|383508806|gb|AFH38238.1| (p)ppGpp synthetase, RelA/SpoT family [Thermus thermophilus JL-18]
Length = 724
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 93/146 (63%), Gaps = 7/146 (4%)
Query: 159 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK 218
+E L ++ L+ S + G EVT R K LYSI+ KM R+ + ++YD A+RV++ K
Sbjct: 224 LQETLTRDELLQ-SQLQGFEVT--GRPKHLYSIWKKMEREGKTLEQIYDLLAVRVILDPK 280
Query: 219 NG-TLHGPAI---QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSA 274
T A+ Q CY +L +VH LW PI G DYI PKP+GYQSLHT V +G
Sbjct: 281 PAPTRESQALREKQVCYHVLGLVHALWQPIPGRVKDYIAVPKPNGYQSLHTTVIALEGLP 340
Query: 275 LEVQIRTQKMHEYAEHGLAAHWLYKE 300
LEVQIRT++MH AE+G+AAHWLYKE
Sbjct: 341 LEVQIRTREMHRVAEYGIAAHWLYKE 366
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K + +AQETL I+ LA RLG+ LK ELEDL F L P+ F + A + + R
Sbjct: 154 MPPEKQKRIAQETLEIYAPLAHRLGMGQLKWELEDLSFRYLHPEAFASLSARIQATQEAR 213
Query: 69 NRV 71
R+
Sbjct: 214 ERL 216
>gi|254672770|emb|CBA06820.1| GTP pyrophosphokinase [Neisseria meningitidis alpha275]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|419796195|ref|ZP_14321755.1| RelA/SpoT family protein [Neisseria sicca VK64]
gi|385699737|gb|EIG30014.1| RelA/SpoT family protein [Neisseria sicca VK64]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|349610831|ref|ZP_08890155.1| hypothetical protein HMPREF1028_02130 [Neisseria sp. GT4A_CT1]
gi|348615549|gb|EGY65064.1| hypothetical protein HMPREF1028_02130 [Neisseria sp. GT4A_CT1]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|148658211|ref|YP_001278416.1| (p)ppGpp synthetase I SpoT/RelA [Roseiflexus sp. RS-1]
gi|148570321|gb|ABQ92466.1| (p)ppGpp synthetase I, SpoT/RelA [Roseiflexus sp. RS-1]
Length = 774
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 87/147 (59%), Gaps = 18/147 (12%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
+ LEKE G++ ++ R K +YSI+ KM RK V + ++YD A+RV+V
Sbjct: 273 QVLEKE---------GIKADITGRPKHIYSIYRKMERKGVSLDQIYDQLAVRVIVD---- 319
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
+ CY +L +VH W P+ GEFDDYI PK S YQSLHT V P G E+QIR
Sbjct: 320 -----TVADCYRVLGLVHATWPPVPGEFDDYIAMPKESMYQSLHTTVLIPGGQPCEIQIR 374
Query: 281 TQKMHEYAEHGLAAHWLYKETGNKLQS 307
T +MHE AE G+AAHW YKE ++ +
Sbjct: 375 THEMHEVAERGIAAHWRYKEGFGRIDA 401
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRV 71
+ + +A ETL I+ LA RLG+W +K ELED FAVL P+ ++++ L+ R R+
Sbjct: 205 RQKRMALETLEIYAPLAHRLGIWQIKWELEDRAFAVLNPEKYQEISRQLSLRRDARERL 263
>gi|421541039|ref|ZP_15987174.1| GTP-pyrophosphokinase [Neisseria meningitidis 93004]
gi|402316766|gb|EJU52307.1| GTP-pyrophosphokinase [Neisseria meningitidis 93004]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421543008|ref|ZP_15989109.1| GTP pyrophosphokinase [Neisseria meningitidis NM255]
gi|402316087|gb|EJU51640.1| GTP pyrophosphokinase [Neisseria meningitidis NM255]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421549362|ref|ZP_15995379.1| GTP pyrophosphokinase [Neisseria meningitidis NM2781]
gi|402324184|gb|EJU59621.1| GTP pyrophosphokinase [Neisseria meningitidis NM2781]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|344343209|ref|ZP_08774078.1| (p)ppGpp synthetase I, SpoT/RelA [Marichromatium purpuratum 984]
gi|343805140|gb|EGV23037.1| (p)ppGpp synthetase I, SpoT/RelA [Marichromatium purpuratum 984]
Length = 738
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KMRRK V I +++D RA+R++V ++ CY+ L
Sbjct: 249 GISAEITGRPKHIYSIWKKMRRKGVDIEEIFDLRAVRIMV---------ESVADCYAALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI PK + YQSLHTAV GP +LEVQIRT +MH +AE G+AAH
Sbjct: 300 IVHGLWRHIPKEFDDYIATPKGNMYQSLHTAVIGPGDKSLEVQIRTYEMHRHAEFGVAAH 359
Query: 296 WLYKET 301
W YKE
Sbjct: 360 WAYKEA 365
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A++T ++ LA+RLG+W LK ELEDL LQP+ ++++
Sbjct: 179 IARDTERVYAPLANRLGVWQLKWELEDLSLRYLQPEEYKRI 219
>gi|197284126|ref|YP_002149998.1| GDP/GTP pyrophosphokinase [Proteus mirabilis HI4320]
gi|227358008|ref|ZP_03842350.1| GTP pyrophosphokinase [Proteus mirabilis ATCC 29906]
gi|425067012|ref|ZP_18470128.1| GTP pyrophosphokinase [Proteus mirabilis WGLW6]
gi|425073550|ref|ZP_18476656.1| GTP pyrophosphokinase [Proteus mirabilis WGLW4]
gi|194681613|emb|CAR40620.1| GTP pyrophosphokinase [Proteus mirabilis HI4320]
gi|227161743|gb|EEI46775.1| GTP pyrophosphokinase [Proteus mirabilis ATCC 29906]
gi|404595235|gb|EKA95786.1| GTP pyrophosphokinase [Proteus mirabilis WGLW4]
gi|404601683|gb|EKB02075.1| GTP pyrophosphokinase [Proteus mirabilis WGLW6]
Length = 746
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+EV + R K +YSI+ KM++K++ +++D RA+R+VV +Q CY+ L
Sbjct: 244 NIEVDIYGRPKHIYSIWRKMKKKNLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
>gi|433474076|ref|ZP_20431434.1| relA/SpoT family protein [Neisseria meningitidis 97021]
gi|433482578|ref|ZP_20439834.1| relA/SpoT family protein [Neisseria meningitidis 2006087]
gi|433484504|ref|ZP_20441725.1| relA/SpoT family protein [Neisseria meningitidis 2002038]
gi|433486472|ref|ZP_20443668.1| relA/SpoT family protein [Neisseria meningitidis 97014]
gi|432208608|gb|ELK64585.1| relA/SpoT family protein [Neisseria meningitidis 97021]
gi|432214776|gb|ELK70671.1| relA/SpoT family protein [Neisseria meningitidis 2006087]
gi|432219898|gb|ELK75729.1| relA/SpoT family protein [Neisseria meningitidis 2002038]
gi|432222285|gb|ELK78084.1| relA/SpoT family protein [Neisseria meningitidis 97014]
Length = 737
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|303232508|ref|ZP_07319195.1| putative GTP diphosphokinase [Atopobium vaginae PB189-T1-4]
gi|302481392|gb|EFL44465.1| putative GTP diphosphokinase [Atopobium vaginae PB189-T1-4]
Length = 829
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 93/147 (63%), Gaps = 17/147 (11%)
Query: 176 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCY 231
GM+ V++ R K L+SI+ KM RKD + +YD A+RV+ VGD CY
Sbjct: 300 GMQGVSIQGRPKHLWSIYQKMIRKDKNFNDIYDLIAIRVLTKTVGD------------CY 347
Query: 232 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 291
S L VH +W P+ G F DYI PKP+GY+SLHT V G D +E+QIRT +MH AE+G
Sbjct: 348 SALGSVHTIWHPLPGRFKDYIAMPKPNGYRSLHTTVIGIDARPIEIQIRTYEMHSQAEYG 407
Query: 292 LAAHWLYKETGNKLQSISSMDESDIEA 318
+AAHWLYK++G+ Q S DE +I++
Sbjct: 408 IAAHWLYKKSGSS-QGKMSRDEKEIDS 433
>gi|421555424|ref|ZP_16001357.1| GTP pyrophosphokinase [Neisseria meningitidis 98008]
gi|402330284|gb|EJU65632.1| GTP pyrophosphokinase [Neisseria meningitidis 98008]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|340363908|ref|ZP_08686219.1| GTP diphosphokinase [Neisseria macacae ATCC 33926]
gi|339884612|gb|EGQ74382.1| GTP diphosphokinase [Neisseria macacae ATCC 33926]
Length = 779
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 300 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 350
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 351 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 410
Query: 301 TG 302
G
Sbjct: 411 GG 412
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 223 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 265
>gi|416168553|ref|ZP_11608013.1| GTP diphosphokinase [Neisseria meningitidis OX99.30304]
gi|325130789|gb|EGC53524.1| GTP diphosphokinase [Neisseria meningitidis OX99.30304]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|385338570|ref|YP_005892443.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis WUE 2594]
gi|433476178|ref|ZP_20433514.1| relA/SpoT family protein [Neisseria meningitidis 88050]
gi|433480304|ref|ZP_20437588.1| relA/SpoT family protein [Neisseria meningitidis 63041]
gi|433516288|ref|ZP_20473052.1| relA/SpoT family protein [Neisseria meningitidis 2004090]
gi|433517081|ref|ZP_20473832.1| relA/SpoT family protein [Neisseria meningitidis 96023]
gi|433520443|ref|ZP_20477157.1| relA/SpoT family protein [Neisseria meningitidis 65014]
gi|433524667|ref|ZP_20481324.1| relA/SpoT family protein [Neisseria meningitidis 97020]
gi|433528943|ref|ZP_20485550.1| relA/SpoT family protein [Neisseria meningitidis NM3652]
gi|433531037|ref|ZP_20487620.1| relA/SpoT family protein [Neisseria meningitidis NM3642]
gi|433533304|ref|ZP_20489862.1| relA/SpoT family protein [Neisseria meningitidis 2007056]
gi|433535188|ref|ZP_20491722.1| relA/SpoT family protein [Neisseria meningitidis 2001212]
gi|433541616|ref|ZP_20498062.1| relA/SpoT family protein [Neisseria meningitidis 63006]
gi|319410984|emb|CBY91380.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis WUE 2594]
gi|432208694|gb|ELK64670.1| relA/SpoT family protein [Neisseria meningitidis 88050]
gi|432214480|gb|ELK70380.1| relA/SpoT family protein [Neisseria meningitidis 63041]
gi|432251574|gb|ELL06938.1| relA/SpoT family protein [Neisseria meningitidis 2004090]
gi|432252740|gb|ELL08091.1| relA/SpoT family protein [Neisseria meningitidis 65014]
gi|432255155|gb|ELL10486.1| relA/SpoT family protein [Neisseria meningitidis 96023]
gi|432258353|gb|ELL13639.1| relA/SpoT family protein [Neisseria meningitidis 97020]
gi|432264047|gb|ELL19257.1| relA/SpoT family protein [Neisseria meningitidis NM3652]
gi|432264848|gb|ELL20045.1| relA/SpoT family protein [Neisseria meningitidis NM3642]
gi|432265432|gb|ELL20627.1| relA/SpoT family protein [Neisseria meningitidis 2007056]
gi|432270207|gb|ELL25348.1| relA/SpoT family protein [Neisseria meningitidis 2001212]
gi|432276448|gb|ELL31505.1| relA/SpoT family protein [Neisseria meningitidis 63006]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|261378943|ref|ZP_05983516.1| GTP diphosphokinase [Neisseria cinerea ATCC 14685]
gi|269144641|gb|EEZ71059.1| GTP diphosphokinase [Neisseria cinerea ATCC 14685]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|121635369|ref|YP_975614.1| GTP pyrophosphokinase [Neisseria meningitidis FAM18]
gi|385855749|ref|YP_005902262.1| GTP diphosphokinase [Neisseria meningitidis M01-240355]
gi|416179061|ref|ZP_11610923.1| GTP diphosphokinase [Neisseria meningitidis M6190]
gi|416190680|ref|ZP_11615861.1| GTP diphosphokinase [Neisseria meningitidis ES14902]
gi|433493121|ref|ZP_20450208.1| relA/SpoT family protein [Neisseria meningitidis NM586]
gi|433495235|ref|ZP_20452298.1| relA/SpoT family protein [Neisseria meningitidis NM762]
gi|433503372|ref|ZP_20460330.1| relA/SpoT family protein [Neisseria meningitidis NM126]
gi|120867075|emb|CAM10840.1| GTP pyrophosphokinase [Neisseria meningitidis FAM18]
gi|325131721|gb|EGC54423.1| GTP diphosphokinase [Neisseria meningitidis M6190]
gi|325138860|gb|EGC61411.1| GTP diphosphokinase [Neisseria meningitidis ES14902]
gi|325204690|gb|ADZ00144.1| GTP diphosphokinase [Neisseria meningitidis M01-240355]
gi|432226912|gb|ELK82632.1| relA/SpoT family protein [Neisseria meningitidis NM586]
gi|432228767|gb|ELK84463.1| relA/SpoT family protein [Neisseria meningitidis NM762]
gi|432239393|gb|ELK94946.1| relA/SpoT family protein [Neisseria meningitidis NM126]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|385341409|ref|YP_005895280.1| GTP diphosphokinase [Neisseria meningitidis M01-240149]
gi|385857760|ref|YP_005904272.1| GTP diphosphokinase [Neisseria meningitidis NZ-05/33]
gi|416188777|ref|ZP_11614969.1| GTP diphosphokinase [Neisseria meningitidis M0579]
gi|421566004|ref|ZP_16011766.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3081]
gi|325135675|gb|EGC58289.1| GTP diphosphokinase [Neisseria meningitidis M0579]
gi|325201615|gb|ADY97069.1| GTP diphosphokinase [Neisseria meningitidis M01-240149]
gi|325208649|gb|ADZ04101.1| GTP diphosphokinase [Neisseria meningitidis NZ-05/33]
gi|402341886|gb|EJU77058.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3081]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|296314370|ref|ZP_06864311.1| GTP diphosphokinase [Neisseria polysaccharea ATCC 43768]
gi|296838927|gb|EFH22865.1| GTP diphosphokinase [Neisseria polysaccharea ATCC 43768]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|292487221|ref|YP_003530093.1| GTP pyrophosphokinase [Erwinia amylovora CFBP1430]
gi|291552640|emb|CBA19685.1| GTP pyrophosphokinase [Erwinia amylovora CFBP1430]
Length = 749
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 249 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAIRIV---------AERLQDCYGALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 300 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPQGKTVEIQIRTRQMHEDAELGVAAH 359
Query: 296 WLYKETG 302
W YKE G
Sbjct: 360 WKYKEGG 366
>gi|385329001|ref|YP_005883304.1| GTP pyrophosphokinase [Neisseria meningitidis alpha710]
gi|308389853|gb|ADO32173.1| GTP pyrophosphokinase [Neisseria meningitidis alpha710]
Length = 769
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 290 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 340
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 341 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 400
Query: 301 TG 302
G
Sbjct: 401 GG 402
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 213 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 255
>gi|433537218|ref|ZP_20493718.1| relA/SpoT family protein [Neisseria meningitidis 77221]
gi|389605160|emb|CCA44081.1| GTP pyrophosphokinase [Neisseria meningitidis alpha522]
gi|432272414|gb|ELL27524.1| relA/SpoT family protein [Neisseria meningitidis 77221]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|433497736|ref|ZP_20454761.1| relA/SpoT family protein [Neisseria meningitidis M7089]
gi|433499502|ref|ZP_20456507.1| relA/SpoT family protein [Neisseria meningitidis M7124]
gi|432231675|gb|ELK87334.1| relA/SpoT family protein [Neisseria meningitidis M7089]
gi|432233068|gb|ELK88702.1| relA/SpoT family protein [Neisseria meningitidis M7124]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|428313851|ref|YP_007124828.1| RelA/SpoT family (p)ppGpp synthetase [Microcoleus sp. PCC 7113]
gi|428255463|gb|AFZ21422.1| (p)ppGpp synthetase, RelA/SpoT family [Microcoleus sp. PCC 7113]
Length = 751
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K LY I+ KM+R+ G H++YD A+R+++ K + CY L IVH
Sbjct: 251 ISGRPKHLYGIYQKMQRQQKGFHEIYDLAAMRLILQTK---------EDCYRALAIVHDA 301
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V GP G +EVQIRT +MH AE+G+AAHW YKE
Sbjct: 302 FRPIPGRFKDYIGLPKPNRYQSLHTGVMGPSGRPIEVQIRTLEMHHIAEYGIAAHWKYKE 361
Query: 301 TGNKLQS-ISSMDE 313
+G + IS+ DE
Sbjct: 362 SGGSSNNRISAEDE 375
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R+++QET I+ LA+RLG+ +K ELEDL F L+P+ +R+M+ +A + R
Sbjct: 167 LNPQKQRSISQETREIFAPLANRLGIGRVKWELEDLAFKYLEPESYRQMQQLVAERRTDR 226
>gi|389795564|ref|ZP_10198684.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter fulvus Jip2]
gi|388430596|gb|EIL87745.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter fulvus Jip2]
Length = 714
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ L+ R K +YSI+ KM+RK + +YD RA+RV+V ++ CY+ L
Sbjct: 224 GIHAELAGRPKHIYSIWKKMQRKALEFSDLYDIRAVRVLVD---------SVSDCYAALG 274
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH W + GEFDDYI PK +GYQSLHTAV GP G LEVQIRT MH E G+AAH
Sbjct: 275 VVHARWPHLPGEFDDYIARPKGNGYQSLHTAVLGPAGKTLEVQIRTHAMHRANELGVAAH 334
Query: 296 WLYKETGN-------KLQSISSMDESDIEASSSLSKD 325
W YKE G+ K+ + + E+ E S L+ D
Sbjct: 335 WRYKEGGSADAEFEAKIAWMRKLLEARGEDDSKLAAD 371
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 24 IWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
I LA+RLG+W LK ELEDL F LQP +R++
Sbjct: 161 IHAPLANRLGIWQLKWELEDLAFRYLQPDTYRRI 194
>gi|268601819|ref|ZP_06135986.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID18]
gi|268585950|gb|EEZ50626.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID18]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|385850732|ref|YP_005897247.1| GTP diphosphokinase [Neisseria meningitidis M04-240196]
gi|325205555|gb|ADZ01008.1| GTP diphosphokinase [Neisseria meningitidis M04-240196]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|416184299|ref|ZP_11613025.1| GTP diphosphokinase [Neisseria meningitidis M13399]
gi|416212198|ref|ZP_11621803.1| GTP diphosphokinase [Neisseria meningitidis M01-240013]
gi|325133621|gb|EGC56279.1| GTP diphosphokinase [Neisseria meningitidis M13399]
gi|325145077|gb|EGC67360.1| GTP diphosphokinase [Neisseria meningitidis M01-240013]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|403237624|ref|ZP_10916210.1| GTP pyrophosphokinase [Bacillus sp. 10403023]
Length = 729
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 89/137 (64%), Gaps = 10/137 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I
Sbjct: 234 IKADISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLGI 284
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH+ AE+G+AAHW
Sbjct: 285 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHQIAEYGIAAHW 344
Query: 297 LYKETGNKLQSISSMDE 313
YKE G ++ SS +E
Sbjct: 345 AYKE-GKQVNQQSSFEE 360
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LPP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPPEKQRRISNETLEIFAPLAHRLGISRIKWELEDTALRYLNPQQYYRI 203
>gi|194099159|ref|YP_002002244.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae NCCP11945]
gi|240014631|ref|ZP_04721544.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae DGI18]
gi|240017077|ref|ZP_04723617.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae FA6140]
gi|240121156|ref|ZP_04734118.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae PID24-1]
gi|268595274|ref|ZP_06129441.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 35/02]
gi|268604151|ref|ZP_06138318.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID1]
gi|268684769|ref|ZP_06151631.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-92-679]
gi|268687049|ref|ZP_06153911.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-93-1035]
gi|291043321|ref|ZP_06569044.1| GTP pyrophosphokinase [Neisseria gonorrhoeae DGI2]
gi|385336161|ref|YP_005890108.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae TCDC-NG08107]
gi|193934449|gb|ACF30273.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae NCCP11945]
gi|268548663|gb|EEZ44081.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 35/02]
gi|268588282|gb|EEZ52958.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID1]
gi|268625053|gb|EEZ57453.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-92-679]
gi|268627333|gb|EEZ59733.1| GTP pyrophosphokinase [Neisseria gonorrhoeae SK-93-1035]
gi|291012927|gb|EFE04910.1| GTP pyrophosphokinase [Neisseria gonorrhoeae DGI2]
gi|317164704|gb|ADV08245.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 737
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|59801730|ref|YP_208442.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA 1090]
gi|254494171|ref|ZP_05107342.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 1291]
gi|268599563|ref|ZP_06133730.1| GTP pyrophosphokinase [Neisseria gonorrhoeae MS11]
gi|293398632|ref|ZP_06642810.1| GTP pyrophosphokinase [Neisseria gonorrhoeae F62]
gi|59718625|gb|AAW90030.1| putative GTP pyrophosphokinase [Neisseria gonorrhoeae FA 1090]
gi|226513211|gb|EEH62556.1| GTP pyrophosphokinase [Neisseria gonorrhoeae 1291]
gi|268583694|gb|EEZ48370.1| GTP pyrophosphokinase [Neisseria gonorrhoeae MS11]
gi|291611103|gb|EFF40200.1| GTP pyrophosphokinase [Neisseria gonorrhoeae F62]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|298369524|ref|ZP_06980841.1| GTP diphosphokinase [Neisseria sp. oral taxon 014 str. F0314]
gi|298282081|gb|EFI23569.1| GTP diphosphokinase [Neisseria sp. oral taxon 014 str. F0314]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|260898313|ref|ZP_05906809.1| GTP diphosphokinase [Vibrio parahaemolyticus Peru-466]
gi|308085243|gb|EFO34938.1| GTP diphosphokinase [Vibrio parahaemolyticus Peru-466]
Length = 377
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 92/138 (66%), Gaps = 12/138 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE+ + S S DE
Sbjct: 354 WKYKESAS---SRSGYDE 368
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIKDFVEDLSQEMKACGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|268597393|ref|ZP_06131560.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA19]
gi|268682609|ref|ZP_06149471.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID332]
gi|268551181|gb|EEZ46200.1| GTP pyrophosphokinase [Neisseria gonorrhoeae FA19]
gi|268622893|gb|EEZ55293.1| GTP pyrophosphokinase [Neisseria gonorrhoeae PID332]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|410637830|ref|ZP_11348400.1| GTP pyrophosphokinase [Glaciecola lipolytica E3]
gi|410142516|dbj|GAC15605.1| GTP pyrophosphokinase [Glaciecola lipolytica E3]
Length = 718
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ V + R K +YSI+ KM++K + ++YD RA+R++ +Q CYS L I
Sbjct: 231 INVKVYGRPKHIYSIWKKMQKKHLSFDQLYDIRAVRII---------ADRLQDCYSALGI 281
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH L+ I EFDDYI PKP+GYQS+HT V GP G ++E+QIRTQ+MH+ AE G+AAHW
Sbjct: 282 VHSLFKHIPNEFDDYIATPKPNGYQSIHTVVVGPQGRSVEIQIRTQQMHQDAELGIAAHW 341
Query: 297 LYKE 300
YKE
Sbjct: 342 KYKE 345
>gi|421561765|ref|ZP_16007603.1| relA/SpoT family protein [Neisseria meningitidis NM2657]
gi|402336792|gb|EJU72050.1| relA/SpoT family protein [Neisseria meningitidis NM2657]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|161870582|ref|YP_001599754.1| GTP pyrophosphokinase [Neisseria meningitidis 053442]
gi|161596135|gb|ABX73795.1| GTP pyrophosphokinase [Neisseria meningitidis 053442]
Length = 773
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 344
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 301 TG 302
G
Sbjct: 405 GG 406
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 217 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 259
>gi|421568219|ref|ZP_16013946.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3001]
gi|402342338|gb|EJU77506.1| GTP-pyrophosphokinase [Neisseria meningitidis NM3001]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|319638672|ref|ZP_07993432.1| GTP pyrophosphokinase [Neisseria mucosa C102]
gi|317400056|gb|EFV80717.1| GTP pyrophosphokinase [Neisseria mucosa C102]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|291297171|ref|YP_003508569.1| (p)ppGpp synthetase I SpoT/RelA [Meiothermus ruber DSM 1279]
gi|290472130|gb|ADD29549.1| (p)ppGpp synthetase I, SpoT/RelA [Meiothermus ruber DSM 1279]
Length = 750
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 102/172 (59%), Gaps = 18/172 (10%)
Query: 135 KSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSK 194
KS A+++A VQ A L E+AL ++ ++ S I EVT R K L+SI+ K
Sbjct: 230 KSHRAEREA-AVQAAKEKL------EQALARDFILKQS-IKKFEVT--GRTKHLFSIWKK 279
Query: 195 MRRKDVGIHKVYDARALRVVVGDKNGTLHGPA------IQCCYSLLDIVHRLWIPIDGEF 248
M R+ I ++YD ALRV++ + G P Q CY +L +VH LW PI G
Sbjct: 280 MEREGKTIEQIYDLLALRVILDPRQGP--DPEENSLREKQVCYHVLGLVHALWQPIPGRV 337
Query: 249 DDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
DYI PKP+GYQSLHT V +G LEVQIRT++MH AE G+AAHWLYKE
Sbjct: 338 KDYIAVPKPNGYQSLHTTVIAVNGLPLEVQIRTREMHRVAEFGVAAHWLYKE 389
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K + +A+ETL I+ LA RLG+ +K ELEDL F L P+ ++ + L S + R
Sbjct: 177 MPPHKQQRIARETLEIYAPLAHRLGIGQVKLELEDLSFRYLDPENYQALERRLKSHRAER 236
>gi|218768747|ref|YP_002343259.1| GTP pyrophosphokinase [Neisseria meningitidis Z2491]
gi|121052755|emb|CAM09099.1| GTP pyrophosphokinase [Neisseria meningitidis Z2491]
Length = 769
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 290 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 340
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 341 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 400
Query: 301 TG 302
G
Sbjct: 401 GG 402
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 213 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 255
>gi|408409949|ref|ZP_11181214.1| GTP pyrophosphokinase [Lactobacillus sp. 66c]
gi|407875894|emb|CCK83020.1| GTP pyrophosphokinase [Lactobacillus sp. 66c]
Length = 753
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIDYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTKEMHEVAEYGVAAH 343
Query: 296 WLYKETGN 303
W YK GN
Sbjct: 344 WAYKR-GN 350
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ETL I+ LA RLG+ +K ELED+ F + P + K+ + + + S R
Sbjct: 155 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWELEDMSFHYINPDEYYKIVSMMDAKRSER 214
>gi|15677581|ref|NP_274738.1| GTP pyrophosphokinase [Neisseria meningitidis MC58]
gi|385852672|ref|YP_005899186.1| GTP diphosphokinase [Neisseria meningitidis H44/76]
gi|416195523|ref|ZP_11617762.1| GTP diphosphokinase [Neisseria meningitidis CU385]
gi|427826412|ref|ZP_18993465.1| GTP pyrophosphokinase [Neisseria meningitidis H44/76]
gi|433488915|ref|ZP_20446068.1| relA/SpoT family protein [Neisseria meningitidis M13255]
gi|433505519|ref|ZP_20462453.1| relA/SpoT family protein [Neisseria meningitidis 9506]
gi|433507728|ref|ZP_20464629.1| relA/SpoT family protein [Neisseria meningitidis 9757]
gi|433509821|ref|ZP_20466681.1| relA/SpoT family protein [Neisseria meningitidis 12888]
gi|433511928|ref|ZP_20468745.1| relA/SpoT family protein [Neisseria meningitidis 4119]
gi|7226990|gb|AAF42080.1| GTP pyrophosphokinase [Neisseria meningitidis MC58]
gi|316985746|gb|EFV64691.1| GTP pyrophosphokinase [Neisseria meningitidis H44/76]
gi|325140806|gb|EGC63316.1| GTP diphosphokinase [Neisseria meningitidis CU385]
gi|325199676|gb|ADY95131.1| GTP diphosphokinase [Neisseria meningitidis H44/76]
gi|432221990|gb|ELK77792.1| relA/SpoT family protein [Neisseria meningitidis M13255]
gi|432239674|gb|ELK95221.1| relA/SpoT family protein [Neisseria meningitidis 9506]
gi|432239778|gb|ELK95324.1| relA/SpoT family protein [Neisseria meningitidis 9757]
gi|432245123|gb|ELL00595.1| relA/SpoT family protein [Neisseria meningitidis 12888]
gi|432245955|gb|ELL01418.1| relA/SpoT family protein [Neisseria meningitidis 4119]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|409351741|ref|ZP_11234324.1| GTP pyrophosphokinase [Lactobacillus equicursoris CIP 110162]
gi|407876538|emb|CCK86382.1| GTP pyrophosphokinase [Lactobacillus equicursoris CIP 110162]
Length = 753
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIDYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MHE AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTKEMHEVAEYGVAAH 343
Query: 296 WLYKETGN 303
W YK GN
Sbjct: 344 WAYKR-GN 350
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ETL I+ LA RLG+ +K ELED+ F + P + K+ + + + S R
Sbjct: 155 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWELEDMSFHYINPDEYYKIVSMMDAKRSER 214
>gi|345876146|ref|ZP_08827921.1| GTP diphosphokinase [Neisseria weaveri LMG 5135]
gi|417957898|ref|ZP_12600816.1| GTP diphosphokinase [Neisseria weaveri ATCC 51223]
gi|343967103|gb|EGV35353.1| GTP diphosphokinase [Neisseria weaveri LMG 5135]
gi|343967644|gb|EGV35887.1| GTP diphosphokinase [Neisseria weaveri ATCC 51223]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KM +K + +YD RA+R++V + CY+ L
Sbjct: 253 GIHYDVAGRPKHIYSIYRKMVKKKLDFSGLYDIRAVRILVD---------TVPECYTTLG 303
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW PI GEFDDYI PK +GY+SLHT V GP+ +EVQIRT MH++ E G+AAH
Sbjct: 304 LVHSLWQPIPGEFDDYIAQPKGNGYKSLHTVVVGPEDKGVEVQIRTFDMHQFNEFGVAAH 363
Query: 296 WLYKETG 302
W YKE G
Sbjct: 364 WRYKEGG 370
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 2 VFEFSYALPPAK-ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRAD 60
+F LP ++ R +A+ETL I+ LA+RLG+W LK +LEDL F P+ ++++ A
Sbjct: 167 TMQFIGTLPDSEDKRLLAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQNPEKYKEIAAL 226
Query: 61 L 61
L
Sbjct: 227 L 227
>gi|328948969|ref|YP_004366306.1| (p)ppGpp synthetase I SpoT/RelA [Treponema succinifaciens DSM 2489]
gi|328449293|gb|AEB15009.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema succinifaciens DSM
2489]
Length = 636
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ V ++SR K YSI+ KMR+++ ++YD ALR++ ++ CY+L+
Sbjct: 241 GITVNITSRAKHFYSIYQKMRKRNKEPGELYDLLALRIICNTESE---------CYTLIG 291
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW P++G F DYI PK +GYQSLHT V +G LE+QIRTQ+MH AEHG+A+H
Sbjct: 292 IVHGLWKPMEGRFKDYIAMPKANGYQSLHTTVIC-EGKPLEIQIRTQEMHSIAEHGVASH 350
Query: 296 WLYKETGN 303
WLYK+ N
Sbjct: 351 WLYKKGTN 358
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 39/55 (70%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
RAVA+E + IWC LASRLG+ +K+E+EDL P++F+++++ +A + R+
Sbjct: 169 RAVAKEVIDIWCPLASRLGMSDVKSEMEDLSLKYSNPEVFQQIKSIVAQKKAERS 223
>gi|433465713|ref|ZP_20423186.1| relA/SpoT family protein [Neisseria meningitidis NM422]
gi|433491102|ref|ZP_20448217.1| relA/SpoT family protein [Neisseria meningitidis NM418]
gi|432201358|gb|ELK57440.1| relA/SpoT family protein [Neisseria meningitidis NM422]
gi|432225937|gb|ELK81673.1| relA/SpoT family protein [Neisseria meningitidis NM418]
Length = 737
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEKYREI 223
>gi|385787354|ref|YP_005818463.1| GDP/GTP pyrophosphokinase [Erwinia sp. Ejp617]
gi|310766626|gb|ADP11576.1| GDP/GTP pyrophosphokinase [Erwinia sp. Ejp617]
Length = 744
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKETG 302
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P+ ++++
Sbjct: 175 AKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPEEYKRI 214
>gi|259909467|ref|YP_002649823.1| GDP/GTP pyrophosphokinase [Erwinia pyrifoliae Ep1/96]
gi|224965089|emb|CAX56621.1| GTP pyrophosphokinase [Erwinia pyrifoliae Ep1/96]
Length = 744
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKETG 302
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P+ ++++
Sbjct: 175 AKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPEEYKRI 214
>gi|420161155|ref|ZP_14667926.1| GTP diphosphokinase [Weissella koreensis KCTC 3621]
gi|394745905|gb|EJF34723.1| GTP diphosphokinase [Weissella koreensis KCTC 3621]
Length = 744
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E+ ++ + V++ R K +YSI+ KM++K ++YD A+RV+V
Sbjct: 224 EIKVTIDNLKLKNVSVYGRPKHIYSIYRKMQKKQKAFEEIYDLLAIRVIVN--------- 274
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
+I CY++L +H W P+ G F DYI PK +GYQSLHT+V GP+G LE+QIRT MH
Sbjct: 275 SIGDCYAVLGAIHSHWTPMPGRFKDYIALPKANGYQSLHTSVIGPEGRPLEIQIRTHDMH 334
Query: 286 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL------SKDTDDH-NPLDTDLFQ 338
E AE G+AAHW YKE + + D+ + S+ SKD+ D + +DLF
Sbjct: 335 EVAEFGVAAHWAYKEGKFDGADVQNSDQQQLNMIQSILELQTESKDSGDFMETVKSDLFT 394
Query: 339 K--YSSLKMGHPVIRVEGSNLL 358
Y+ +G V +G+ L
Sbjct: 395 DRVYAFTPLGDVVELTQGAGPL 416
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
AL PAK + +A ETL I+ LA RLG+ +K ELED L + + + D+
Sbjct: 154 ALNPAKQKRIAGETLEIYAPLADRLGIMTIKWELEDTSLRYLDYEAYHAIAQDM 207
>gi|373857672|ref|ZP_09600413.1| RelA/SpoT family protein [Bacillus sp. 1NLA3E]
gi|372452804|gb|EHP26274.1| RelA/SpoT family protein [Bacillus sp. 1NLA3E]
Length = 731
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 10/136 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ LS R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I
Sbjct: 234 IKAELSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGI 284
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE G+AAHW
Sbjct: 285 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTSEMHEIAEFGIAAHW 344
Query: 297 LYKETGNKLQSISSMD 312
YKE G ISS +
Sbjct: 345 AYKE-GKSASDISSYE 359
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPFEKQRRISNETLEIFAPLAHRLGISKVKWELEDTALRYLNPQQYYRI 203
>gi|254429317|ref|ZP_05043024.1| RelA/SpoT family protein [Alcanivorax sp. DG881]
gi|196195486|gb|EDX90445.1| RelA/SpoT family protein [Alcanivorax sp. DG881]
Length = 724
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 11/134 (8%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
I G EV + R K +YSI+ KM++K + +VYD RA+R++V P ++ CY+
Sbjct: 233 ISGAEV--NGRAKHIYSIWRKMQKKHLDFGEVYDVRAVRILV---------PQVRDCYAA 281
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH LW + EFDDYI +PK +GYQSLHTAV GP+ LEVQIRT MHE AE G+
Sbjct: 282 LGVVHSLWQHVPKEFDDYIASPKGNGYQSLHTAVVGPERKMLEVQIRTFDMHEEAELGVC 341
Query: 294 AHWLYKETGNKLQS 307
AHW YKE K +S
Sbjct: 342 AHWRYKEGAKKGKS 355
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R VAQE I+ LA RLG+ LK ELEDL F LQP ++K+
Sbjct: 156 PERQRKVAQEIFDIYAPLAHRLGVGQLKWELEDLSFRYLQPGAYKKI 202
>gi|375088782|ref|ZP_09735120.1| RelA/SpoT family protein [Dolosigranulum pigrum ATCC 51524]
gi|374561747|gb|EHR33086.1| RelA/SpoT family protein [Dolosigranulum pigrum ATCC 51524]
Length = 490
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 15/168 (8%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E ++ R K ++SI+ KMR + ++YD ALRV+V P+I+ CY +L
Sbjct: 234 IEADITGRPKHIFSIYKKMRNQKKQFSEIYDLLALRVIV---------PSIKDCYGVLGA 284
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H W P+ G F DYI PK + YQSLHT V GPD + LEVQIRT KMHE AE+G+AAHW
Sbjct: 285 IHTKWKPMPGRFKDYIAMPKANMYQSLHTTVLGPDATPLEVQIRTFKMHEIAEYGVAAHW 344
Query: 297 LYKETGNKLQSISSMDE------SDIEASSSLSKDTDDHNPLDTDLFQ 338
YKE MD+ IE + + +D + + D+F+
Sbjct: 345 AYKEGITTKAPTDEMDQHISWFRDIIELQTESNTASDFMDSIKQDIFK 392
>gi|254670577|emb|CBA06476.1| GTP pyrophosphokinase [Neisseria meningitidis alpha153]
Length = 773
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 294 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 344
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 345 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 404
Query: 301 TG 302
G
Sbjct: 405 GG 406
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 217 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQKPEKYREI 259
>gi|339635160|ref|YP_004726801.1| GTP pyrophosphokinase [Weissella koreensis KACC 15510]
gi|338854956|gb|AEJ24122.1| GTP pyrophosphokinase [Weissella koreensis KACC 15510]
Length = 744
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 18/202 (8%)
Query: 166 ELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGP 225
E+ ++ + V++ R K +YSI+ KM++K ++YD A+RV+V
Sbjct: 224 EIKVTIDNLKLKNVSVYGRPKHIYSIYRKMQKKQKAFEEIYDLLAIRVIVN--------- 274
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
+I CY++L +H W P+ G F DYI PK +GYQSLHT+V GP+G LE+QIRT MH
Sbjct: 275 SIGDCYAVLGAIHSHWTPMPGRFKDYIALPKANGYQSLHTSVIGPEGRPLEIQIRTHDMH 334
Query: 286 EYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSL------SKDTDDH-NPLDTDLFQ 338
E AE G+AAHW YKE + + D+ + S+ SKD+ D + +DLF
Sbjct: 335 EVAEFGVAAHWAYKEGKFDGADVQNSDQQQLNMIQSILELQTESKDSGDFMETVKSDLFT 394
Query: 339 K--YSSLKMGHPVIRVEGSNLL 358
Y+ +G V +G+ L
Sbjct: 395 DRVYAFTPLGDVVELTQGAGPL 416
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
AL PAK + +A ETL I+ LA RLG+ +K ELED L + + + D+
Sbjct: 154 ALNPAKQKRIAGETLEIYAPLADRLGIMTIKWELEDTSLRYLDYEAYHAIAQDM 207
>gi|424592150|ref|ZP_18031574.1| GTP pyrophosphokinase [Vibrio cholerae CP1037(10)]
gi|408029811|gb|EKG66513.1| GTP pyrophosphokinase [Vibrio cholerae CP1037(10)]
Length = 738
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQS 307
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|261399996|ref|ZP_05986121.1| GTP diphosphokinase [Neisseria lactamica ATCC 23970]
gi|269210463|gb|EEZ76918.1| GTP diphosphokinase [Neisseria lactamica ATCC 23970]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|110834484|ref|YP_693343.1| GTP pyrophosphokinase [Alcanivorax borkumensis SK2]
gi|110647595|emb|CAL17071.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp
synthetase I) [Alcanivorax borkumensis SK2]
Length = 746
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 11/134 (8%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
I G EV + R K +YSI+ KM++K + +VYD RA+R++V P ++ CY+
Sbjct: 255 IGGAEV--NGRAKHIYSIWRKMQKKHLDFGEVYDVRAVRILV---------PEVRDCYAA 303
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH LW + EFDDYI +PK +GYQSLHTAV GP+ LEVQIRT MHE AE G+
Sbjct: 304 LGVVHSLWQHVPKEFDDYIASPKGNGYQSLHTAVVGPERKMLEVQIRTFDMHEEAELGVC 363
Query: 294 AHWLYKETGNKLQS 307
AHW YKE K +S
Sbjct: 364 AHWRYKEGAKKGKS 377
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + VAQE I+ LA RLG+ LK ELEDL F LQ ++K+
Sbjct: 178 PERQSKVAQEIFDIYAPLAHRLGVGQLKWELEDLSFRYLQSGAYKKI 224
>gi|15642447|ref|NP_232080.1| GTP pyrophosphokinase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121728974|ref|ZP_01681978.1| GTP pyrophosphokinase [Vibrio cholerae V52]
gi|147673921|ref|YP_001217953.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|153214531|ref|ZP_01949440.1| GTP pyrophosphokinase [Vibrio cholerae 1587]
gi|153803094|ref|ZP_01957680.1| GTP pyrophosphokinase [Vibrio cholerae MZO-3]
gi|227082572|ref|YP_002811123.1| GTP pyrophosphokinase [Vibrio cholerae M66-2]
gi|227118893|ref|YP_002820789.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|229507489|ref|ZP_04396994.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae BX
330286]
gi|229512316|ref|ZP_04401795.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae B33]
gi|229514077|ref|ZP_04403539.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TMA
21]
gi|229519452|ref|ZP_04408895.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC9]
gi|229521279|ref|ZP_04410699.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TM
11079-80]
gi|229524437|ref|ZP_04413842.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae bv.
albensis VL426]
gi|229527057|ref|ZP_04416452.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
12129(1)]
gi|229606994|ref|YP_002877642.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
MJ-1236]
gi|254291651|ref|ZP_04962439.1| GTP pyrophosphokinase [Vibrio cholerae AM-19226]
gi|254849575|ref|ZP_05238925.1| GTP pyrophosphokinase [Vibrio cholerae MO10]
gi|255746878|ref|ZP_05420823.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholera CIRS
101]
gi|262162043|ref|ZP_06031059.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae INDRE
91/1]
gi|262167282|ref|ZP_06034992.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC27]
gi|298500192|ref|ZP_07009997.1| ppGpp synthetase I [Vibrio cholerae MAK 757]
gi|360036326|ref|YP_004938089.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379742239|ref|YP_005334208.1| GTP pyrophosphokinase [Vibrio cholerae IEC224]
gi|384425390|ref|YP_005634748.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio cholerae
LMA3984-4]
gi|417814466|ref|ZP_12461119.1| GTP pyrophosphokinase [Vibrio cholerae HC-49A2]
gi|417818206|ref|ZP_12464834.1| GTP pyrophosphokinase [Vibrio cholerae HCUF01]
gi|417821765|ref|ZP_12468379.1| GTP pyrophosphokinase [Vibrio cholerae HE39]
gi|417825669|ref|ZP_12472257.1| GTP pyrophosphokinase [Vibrio cholerae HE48]
gi|418335450|ref|ZP_12944359.1| GTP pyrophosphokinase [Vibrio cholerae HC-06A1]
gi|418339414|ref|ZP_12948304.1| GTP pyrophosphokinase [Vibrio cholerae HC-23A1]
gi|418346985|ref|ZP_12951738.1| GTP pyrophosphokinase [Vibrio cholerae HC-28A1]
gi|418350742|ref|ZP_12955473.1| GTP pyrophosphokinase [Vibrio cholerae HC-43A1]
gi|418355936|ref|ZP_12958655.1| GTP pyrophosphokinase [Vibrio cholerae HC-61A1]
gi|419827395|ref|ZP_14350894.1| relA/SpoT family protein [Vibrio cholerae CP1033(6)]
gi|419830884|ref|ZP_14354369.1| relA/SpoT family protein [Vibrio cholerae HC-1A2]
gi|419834569|ref|ZP_14358023.1| relA/SpoT family protein [Vibrio cholerae HC-61A2]
gi|419838141|ref|ZP_14361579.1| GTP pyrophosphokinase [Vibrio cholerae HC-46B1]
gi|421317796|ref|ZP_15768364.1| GTP pyrophosphokinase [Vibrio cholerae CP1032(5)]
gi|421322200|ref|ZP_15772752.1| GTP pyrophosphokinase [Vibrio cholerae CP1038(11)]
gi|421325997|ref|ZP_15776521.1| GTP pyrophosphokinase [Vibrio cholerae CP1041(14)]
gi|421329655|ref|ZP_15780165.1| GTP pyrophosphokinase [Vibrio cholerae CP1042(15)]
gi|421333611|ref|ZP_15784088.1| GTP pyrophosphokinase [Vibrio cholerae CP1046(19)]
gi|421337154|ref|ZP_15787615.1| GTP pyrophosphokinase [Vibrio cholerae CP1048(21)]
gi|421340581|ref|ZP_15791013.1| GTP pyrophosphokinase [Vibrio cholerae HC-20A2]
gi|421344309|ref|ZP_15794712.1| GTP pyrophosphokinase [Vibrio cholerae HC-43B1]
gi|421347819|ref|ZP_15798196.1| GTP pyrophosphokinase [Vibrio cholerae HC-46A1]
gi|421352155|ref|ZP_15802520.1| GTP pyrophosphokinase [Vibrio cholerae HE-25]
gi|421355134|ref|ZP_15805466.1| GTP pyrophosphokinase [Vibrio cholerae HE-45]
gi|422308384|ref|ZP_16395534.1| relA/SpoT family protein [Vibrio cholerae CP1035(8)]
gi|422897541|ref|ZP_16934980.1| GTP pyrophosphokinase [Vibrio cholerae HC-40A1]
gi|422903740|ref|ZP_16938704.1| GTP pyrophosphokinase [Vibrio cholerae HC-48A1]
gi|422907624|ref|ZP_16942417.1| GTP pyrophosphokinase [Vibrio cholerae HC-70A1]
gi|422914464|ref|ZP_16948968.1| GTP pyrophosphokinase [Vibrio cholerae HFU-02]
gi|422918283|ref|ZP_16952597.1| GTP pyrophosphokinase [Vibrio cholerae HC-02A1]
gi|422923744|ref|ZP_16956888.1| GTP pyrophosphokinase [Vibrio cholerae BJG-01]
gi|422926668|ref|ZP_16959680.1| GTP pyrophosphokinase [Vibrio cholerae HC-38A1]
gi|423145991|ref|ZP_17133584.1| GTP pyrophosphokinase [Vibrio cholerae HC-19A1]
gi|423150667|ref|ZP_17137980.1| GTP pyrophosphokinase [Vibrio cholerae HC-21A1]
gi|423154501|ref|ZP_17141665.1| GTP pyrophosphokinase [Vibrio cholerae HC-22A1]
gi|423157569|ref|ZP_17144661.1| GTP pyrophosphokinase [Vibrio cholerae HC-32A1]
gi|423161142|ref|ZP_17148080.1| GTP pyrophosphokinase [Vibrio cholerae HC-33A2]
gi|423165971|ref|ZP_17152690.1| GTP pyrophosphokinase [Vibrio cholerae HC-48B2]
gi|423732000|ref|ZP_17705301.1| relA/SpoT family protein [Vibrio cholerae HC-17A1]
gi|423736103|ref|ZP_17709293.1| relA/SpoT family protein [Vibrio cholerae HC-41B1]
gi|423771402|ref|ZP_17713566.1| relA/SpoT family protein [Vibrio cholerae HC-50A2]
gi|423823181|ref|ZP_17717189.1| relA/SpoT family protein [Vibrio cholerae HC-55C2]
gi|423857143|ref|ZP_17720992.1| relA/SpoT family protein [Vibrio cholerae HC-59A1]
gi|423884418|ref|ZP_17724585.1| relA/SpoT family protein [Vibrio cholerae HC-60A1]
gi|423896778|ref|ZP_17727610.1| relA/SpoT family protein [Vibrio cholerae HC-62A1]
gi|423931981|ref|ZP_17732003.1| relA/SpoT family protein [Vibrio cholerae HC-77A1]
gi|423957738|ref|ZP_17735481.1| relA/SpoT family protein [Vibrio cholerae HE-40]
gi|423985723|ref|ZP_17739037.1| relA/SpoT family protein [Vibrio cholerae HE-46]
gi|423998705|ref|ZP_17741955.1| GTP pyrophosphokinase [Vibrio cholerae HC-02C1]
gi|424003416|ref|ZP_17746490.1| GTP pyrophosphokinase [Vibrio cholerae HC-17A2]
gi|424007210|ref|ZP_17750179.1| GTP pyrophosphokinase [Vibrio cholerae HC-37A1]
gi|424010435|ref|ZP_17753368.1| GTP pyrophosphokinase [Vibrio cholerae HC-44C1]
gi|424017606|ref|ZP_17757432.1| GTP pyrophosphokinase [Vibrio cholerae HC-55B2]
gi|424020523|ref|ZP_17760304.1| GTP pyrophosphokinase [Vibrio cholerae HC-59B1]
gi|424025190|ref|ZP_17764839.1| GTP pyrophosphokinase [Vibrio cholerae HC-62B1]
gi|424028076|ref|ZP_17767677.1| GTP pyrophosphokinase [Vibrio cholerae HC-69A1]
gi|424587358|ref|ZP_18026936.1| GTP pyrophosphokinase [Vibrio cholerae CP1030(3)]
gi|424596012|ref|ZP_18035330.1| GTP pyrophosphokinase [Vibrio cholerae CP1040(13)]
gi|424599921|ref|ZP_18039099.1| GTP pyrophosphokinase [Vibrio Cholerae CP1044(17)]
gi|424602683|ref|ZP_18041822.1| GTP pyrophosphokinase [Vibrio cholerae CP1047(20)]
gi|424607617|ref|ZP_18046557.1| GTP pyrophosphokinase [Vibrio cholerae CP1050(23)]
gi|424611433|ref|ZP_18050271.1| GTP pyrophosphokinase [Vibrio cholerae HC-39A1]
gi|424614261|ref|ZP_18053045.1| GTP pyrophosphokinase [Vibrio cholerae HC-41A1]
gi|424618228|ref|ZP_18056898.1| GTP pyrophosphokinase [Vibrio cholerae HC-42A1]
gi|424623014|ref|ZP_18061517.1| GTP pyrophosphokinase [Vibrio cholerae HC-47A1]
gi|424625904|ref|ZP_18064363.1| GTP pyrophosphokinase [Vibrio cholerae HC-50A1]
gi|424630388|ref|ZP_18068670.1| GTP pyrophosphokinase [Vibrio cholerae HC-51A1]
gi|424634435|ref|ZP_18072533.1| GTP pyrophosphokinase [Vibrio cholerae HC-52A1]
gi|424637514|ref|ZP_18075520.1| GTP pyrophosphokinase [Vibrio cholerae HC-55A1]
gi|424641418|ref|ZP_18079298.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A1]
gi|424645973|ref|ZP_18083707.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A2]
gi|424649490|ref|ZP_18087150.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A1]
gi|424653740|ref|ZP_18091119.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A2]
gi|424657562|ref|ZP_18094846.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A2]
gi|429886891|ref|ZP_19368429.1| GTP pyrophosphokinase [Vibrio cholerae PS15]
gi|440710676|ref|ZP_20891324.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae 4260B]
gi|443504790|ref|ZP_21071742.1| GTP pyrophosphokinase [Vibrio cholerae HC-64A1]
gi|443508696|ref|ZP_21075451.1| GTP pyrophosphokinase [Vibrio cholerae HC-65A1]
gi|443512534|ref|ZP_21079167.1| GTP pyrophosphokinase [Vibrio cholerae HC-67A1]
gi|443516093|ref|ZP_21082598.1| GTP pyrophosphokinase [Vibrio cholerae HC-68A1]
gi|443519884|ref|ZP_21086272.1| GTP pyrophosphokinase [Vibrio cholerae HC-71A1]
gi|443524779|ref|ZP_21090982.1| GTP pyrophosphokinase [Vibrio cholerae HC-72A2]
gi|443528409|ref|ZP_21094445.1| GTP pyrophosphokinase [Vibrio cholerae HC-78A1]
gi|443532363|ref|ZP_21098377.1| GTP pyrophosphokinase [Vibrio cholerae HC-7A1]
gi|443536177|ref|ZP_21102044.1| GTP pyrophosphokinase [Vibrio cholerae HC-80A1]
gi|443539705|ref|ZP_21105558.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A1]
gi|449055108|ref|ZP_21733776.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. Inaba G4222]
gi|5738224|gb|AAD50301.1|AF175295_1 ppGpp synthetase I [Vibrio cholerae]
gi|9657028|gb|AAF95593.1| GTP pyrophosphokinase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121628740|gb|EAX61207.1| GTP pyrophosphokinase [Vibrio cholerae V52]
gi|124115333|gb|EAY34153.1| GTP pyrophosphokinase [Vibrio cholerae 1587]
gi|124121376|gb|EAY40119.1| GTP pyrophosphokinase [Vibrio cholerae MZO-3]
gi|146315804|gb|ABQ20343.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|150422423|gb|EDN14382.1| GTP pyrophosphokinase [Vibrio cholerae AM-19226]
gi|227010460|gb|ACP06672.1| GTP pyrophosphokinase [Vibrio cholerae M66-2]
gi|227014343|gb|ACP10553.1| GTP pyrophosphokinase [Vibrio cholerae O395]
gi|229335454|gb|EEO00936.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
12129(1)]
gi|229338018|gb|EEO03035.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae bv.
albensis VL426]
gi|229341811|gb|EEO06813.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TM
11079-80]
gi|229344141|gb|EEO09116.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC9]
gi|229349258|gb|EEO14215.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae TMA
21]
gi|229352281|gb|EEO17222.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae B33]
gi|229354994|gb|EEO19915.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae BX
330286]
gi|229369649|gb|ACQ60072.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae
MJ-1236]
gi|254845280|gb|EET23694.1| GTP pyrophosphokinase [Vibrio cholerae MO10]
gi|255735280|gb|EET90680.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholera CIRS
101]
gi|262024257|gb|EEY42948.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae RC27]
gi|262028292|gb|EEY46949.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae INDRE
91/1]
gi|297540885|gb|EFH76939.1| ppGpp synthetase I [Vibrio cholerae MAK 757]
gi|327484943|gb|AEA79350.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio cholerae
LMA3984-4]
gi|340035802|gb|EGQ96780.1| GTP pyrophosphokinase [Vibrio cholerae HCUF01]
gi|340036952|gb|EGQ97928.1| GTP pyrophosphokinase [Vibrio cholerae HC-49A2]
gi|340039396|gb|EGR00371.1| GTP pyrophosphokinase [Vibrio cholerae HE39]
gi|340047154|gb|EGR08084.1| GTP pyrophosphokinase [Vibrio cholerae HE48]
gi|341619797|gb|EGS45599.1| GTP pyrophosphokinase [Vibrio cholerae HC-48A1]
gi|341619914|gb|EGS45701.1| GTP pyrophosphokinase [Vibrio cholerae HC-70A1]
gi|341620719|gb|EGS46485.1| GTP pyrophosphokinase [Vibrio cholerae HC-40A1]
gi|341635328|gb|EGS60046.1| GTP pyrophosphokinase [Vibrio cholerae HC-02A1]
gi|341636276|gb|EGS60978.1| GTP pyrophosphokinase [Vibrio cholerae HFU-02]
gi|341643547|gb|EGS67829.1| GTP pyrophosphokinase [Vibrio cholerae BJG-01]
gi|341645669|gb|EGS69798.1| GTP pyrophosphokinase [Vibrio cholerae HC-38A1]
gi|356416485|gb|EHH70116.1| GTP pyrophosphokinase [Vibrio cholerae HC-06A1]
gi|356417344|gb|EHH70962.1| GTP pyrophosphokinase [Vibrio cholerae HC-21A1]
gi|356422235|gb|EHH75718.1| GTP pyrophosphokinase [Vibrio cholerae HC-19A1]
gi|356427706|gb|EHH80947.1| GTP pyrophosphokinase [Vibrio cholerae HC-22A1]
gi|356428374|gb|EHH81601.1| GTP pyrophosphokinase [Vibrio cholerae HC-23A1]
gi|356429513|gb|EHH82729.1| GTP pyrophosphokinase [Vibrio cholerae HC-28A1]
gi|356439039|gb|EHH92039.1| GTP pyrophosphokinase [Vibrio cholerae HC-32A1]
gi|356443635|gb|EHH96454.1| GTP pyrophosphokinase [Vibrio cholerae HC-33A2]
gi|356445238|gb|EHH98047.1| GTP pyrophosphokinase [Vibrio cholerae HC-43A1]
gi|356449562|gb|EHI02308.1| GTP pyrophosphokinase [Vibrio cholerae HC-48B2]
gi|356452434|gb|EHI05113.1| GTP pyrophosphokinase [Vibrio cholerae HC-61A1]
gi|356647480|gb|AET27535.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795749|gb|AFC59220.1| GTP pyrophosphokinase [Vibrio cholerae IEC224]
gi|395916054|gb|EJH26884.1| GTP pyrophosphokinase [Vibrio cholerae CP1032(5)]
gi|395917835|gb|EJH28663.1| GTP pyrophosphokinase [Vibrio cholerae CP1041(14)]
gi|395917940|gb|EJH28767.1| GTP pyrophosphokinase [Vibrio cholerae CP1038(11)]
gi|395928189|gb|EJH38952.1| GTP pyrophosphokinase [Vibrio cholerae CP1042(15)]
gi|395929013|gb|EJH39766.1| GTP pyrophosphokinase [Vibrio cholerae CP1046(19)]
gi|395932253|gb|EJH42997.1| GTP pyrophosphokinase [Vibrio cholerae CP1048(21)]
gi|395939864|gb|EJH50546.1| GTP pyrophosphokinase [Vibrio cholerae HC-20A2]
gi|395940389|gb|EJH51070.1| GTP pyrophosphokinase [Vibrio cholerae HC-43B1]
gi|395942398|gb|EJH53074.1| GTP pyrophosphokinase [Vibrio cholerae HC-46A1]
gi|395952600|gb|EJH63214.1| GTP pyrophosphokinase [Vibrio cholerae HE-25]
gi|395954259|gb|EJH64872.1| GTP pyrophosphokinase [Vibrio cholerae HE-45]
gi|395957729|gb|EJH68258.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A2]
gi|395958232|gb|EJH68732.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A2]
gi|395960863|gb|EJH71218.1| GTP pyrophosphokinase [Vibrio cholerae HC-42A1]
gi|395970116|gb|EJH79923.1| GTP pyrophosphokinase [Vibrio cholerae HC-47A1]
gi|395972027|gb|EJH81648.1| GTP pyrophosphokinase [Vibrio cholerae CP1030(3)]
gi|395974486|gb|EJH84012.1| GTP pyrophosphokinase [Vibrio cholerae CP1047(20)]
gi|408006173|gb|EKG44345.1| GTP pyrophosphokinase [Vibrio cholerae HC-39A1]
gi|408010755|gb|EKG48604.1| GTP pyrophosphokinase [Vibrio cholerae HC-41A1]
gi|408011081|gb|EKG48917.1| GTP pyrophosphokinase [Vibrio cholerae HC-50A1]
gi|408017205|gb|EKG54723.1| GTP pyrophosphokinase [Vibrio cholerae HC-52A1]
gi|408022024|gb|EKG59253.1| GTP pyrophosphokinase [Vibrio cholerae HC-56A1]
gi|408022459|gb|EKG59668.1| GTP pyrophosphokinase [Vibrio cholerae HC-55A1]
gi|408030562|gb|EKG67217.1| GTP pyrophosphokinase [Vibrio cholerae CP1040(13)]
gi|408031260|gb|EKG67896.1| GTP pyrophosphokinase [Vibrio cholerae HC-57A1]
gi|408040647|gb|EKG76818.1| GTP pyrophosphokinase [Vibrio Cholerae CP1044(17)]
gi|408041951|gb|EKG78034.1| GTP pyrophosphokinase [Vibrio cholerae CP1050(23)]
gi|408051884|gb|EKG86957.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A2]
gi|408053460|gb|EKG88474.1| GTP pyrophosphokinase [Vibrio cholerae HC-51A1]
gi|408608185|gb|EKK81588.1| relA/SpoT family protein [Vibrio cholerae CP1033(6)]
gi|408617654|gb|EKK90767.1| relA/SpoT family protein [Vibrio cholerae CP1035(8)]
gi|408620657|gb|EKK93669.1| relA/SpoT family protein [Vibrio cholerae HC-1A2]
gi|408622445|gb|EKK95429.1| relA/SpoT family protein [Vibrio cholerae HC-17A1]
gi|408629075|gb|EKL01788.1| relA/SpoT family protein [Vibrio cholerae HC-41B1]
gi|408632862|gb|EKL05290.1| relA/SpoT family protein [Vibrio cholerae HC-50A2]
gi|408634289|gb|EKL06552.1| relA/SpoT family protein [Vibrio cholerae HC-55C2]
gi|408639747|gb|EKL11554.1| relA/SpoT family protein [Vibrio cholerae HC-59A1]
gi|408640068|gb|EKL11869.1| relA/SpoT family protein [Vibrio cholerae HC-60A1]
gi|408648702|gb|EKL20037.1| relA/SpoT family protein [Vibrio cholerae HC-61A2]
gi|408653573|gb|EKL24735.1| relA/SpoT family protein [Vibrio cholerae HC-77A1]
gi|408654066|gb|EKL25209.1| relA/SpoT family protein [Vibrio cholerae HC-62A1]
gi|408656146|gb|EKL27244.1| relA/SpoT family protein [Vibrio cholerae HE-40]
gi|408663566|gb|EKL34435.1| relA/SpoT family protein [Vibrio cholerae HE-46]
gi|408844309|gb|EKL84441.1| GTP pyrophosphokinase [Vibrio cholerae HC-37A1]
gi|408845065|gb|EKL85186.1| GTP pyrophosphokinase [Vibrio cholerae HC-17A2]
gi|408852147|gb|EKL91991.1| GTP pyrophosphokinase [Vibrio cholerae HC-02C1]
gi|408856689|gb|EKL96384.1| GTP pyrophosphokinase [Vibrio cholerae HC-46B1]
gi|408858724|gb|EKL98396.1| GTP pyrophosphokinase [Vibrio cholerae HC-55B2]
gi|408863064|gb|EKM02560.1| GTP pyrophosphokinase [Vibrio cholerae HC-44C1]
gi|408866721|gb|EKM06098.1| GTP pyrophosphokinase [Vibrio cholerae HC-59B1]
gi|408869588|gb|EKM08884.1| GTP pyrophosphokinase [Vibrio cholerae HC-62B1]
gi|408878352|gb|EKM17362.1| GTP pyrophosphokinase [Vibrio cholerae HC-69A1]
gi|429226203|gb|EKY32343.1| GTP pyrophosphokinase [Vibrio cholerae PS15]
gi|439974005|gb|ELP50209.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio cholerae 4260B]
gi|443430869|gb|ELS73427.1| GTP pyrophosphokinase [Vibrio cholerae HC-64A1]
gi|443434699|gb|ELS80851.1| GTP pyrophosphokinase [Vibrio cholerae HC-65A1]
gi|443438592|gb|ELS88312.1| GTP pyrophosphokinase [Vibrio cholerae HC-67A1]
gi|443442629|gb|ELS95937.1| GTP pyrophosphokinase [Vibrio cholerae HC-68A1]
gi|443446518|gb|ELT03182.1| GTP pyrophosphokinase [Vibrio cholerae HC-71A1]
gi|443449232|gb|ELT09533.1| GTP pyrophosphokinase [Vibrio cholerae HC-72A2]
gi|443453228|gb|ELT17059.1| GTP pyrophosphokinase [Vibrio cholerae HC-78A1]
gi|443457753|gb|ELT25150.1| GTP pyrophosphokinase [Vibrio cholerae HC-7A1]
gi|443460680|gb|ELT31764.1| GTP pyrophosphokinase [Vibrio cholerae HC-80A1]
gi|443464835|gb|ELT39496.1| GTP pyrophosphokinase [Vibrio cholerae HC-81A1]
gi|448265150|gb|EMB02385.1| GTP pyrophosphokinase [Vibrio cholerae O1 str. Inaba G4222]
Length = 738
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQS 307
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|257064877|ref|YP_003144549.1| (p)ppGpp synthetase, RelA/SpoT family [Slackia heliotrinireducens
DSM 20476]
gi|256792530|gb|ACV23200.1| (p)ppGpp synthetase, RelA/SpoT family [Slackia heliotrinireducens
DSM 20476]
Length = 789
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ ++ R K LYSI KM ++ G ++YD A+R++V +++ CYS+L
Sbjct: 274 NIKAHIAGRPKHLYSINQKMINREKGFSEIYDLIAVRIIV---------ESVKDCYSVLG 324
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ G F DYI PK +GYQSLHT V GP G LEVQIRT++MH +E+G+AAH
Sbjct: 325 SVHSLWHPMPGRFKDYIAMPKANGYQSLHTTVIGPAGRPLEVQIRTEEMHRLSEYGVAAH 384
Query: 296 WLYKETGN 303
W YKE GN
Sbjct: 385 WRYKEKGN 392
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 494 EASINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIM 552
+A+ + ++ LR M+ W+++ + S L + K+ + P EV + P GE+M
Sbjct: 396 DAAFDKQIAWLRQMVDWQDETQDSREFLSELKV---------DLAPSEVFVFT-PAGEVM 445
Query: 553 RLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
LR+GST D A V E G + VNG +V + +LK GD VE+
Sbjct: 446 SLRAGSTPIDFAYAVHTEVGNHCVGAKVNGDIVPLSYQLKMGDRVEI 492
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A ETL I+ +A RLG+ ++K ELEDL F L P F+++
Sbjct: 205 AHETLEIYAPIAHRLGIGSIKWELEDLSFYYLDPARFKQI 244
>gi|433512854|ref|ZP_20469654.1| relA/SpoT family protein [Neisseria meningitidis 63049]
gi|432249680|gb|ELL05083.1| relA/SpoT family protein [Neisseria meningitidis 63049]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|333979510|ref|YP_004517455.1| (p)ppGpp synthetase I SpoT/RelA [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822991|gb|AEG15654.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum kuznetsovii DSM
6115]
Length = 724
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K LYSI++KM ++ + ++YD A+RV+V +I+ CY++L
Sbjct: 235 GIFADIQGRPKHLYSIYTKMEKQQKDLSEIYDVMAVRVIV---------ESIRDCYAVLG 285
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW PI G F DYI PK + YQSLHT V GP G LE+QIRT++MH AE+G+AAH
Sbjct: 286 TVHTLWKPIPGRFKDYIAMPKSNMYQSLHTTVVGPQGEPLEIQIRTREMHRTAEYGIAAH 345
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 346 WRYKEGGK 353
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + +A+ETL I+ LA RLG++ LK ELEDL F L+P+ + ++
Sbjct: 160 TKQKEIARETLEIYAPLAHRLGIYHLKWELEDLSFRYLEPEKYYEL 205
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 497 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 556
++ K+ LR +L W+ +LR +S K + DSV V P G+++ L +
Sbjct: 358 LDQKLAWLRQILEWQRELRDAREFMESL---KIDLFADSV------FVFTPKGDVIELPA 408
Query: 557 GSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
GS D A +V E G + VNG++V + +LK+GDIVE+
Sbjct: 409 GSVPIDFAYRVHTEVGHRCVGARVNGRIVPLDYQLKNGDIVEI 451
>gi|387872445|ref|YP_005803827.1| GTP pyrophosphokinase [Erwinia pyrifoliae DSM 12163]
gi|283479540|emb|CAY75456.1| GTP pyrophosphokinase [Erwinia pyrifoliae DSM 12163]
Length = 749
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 249 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 300 IVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 359
Query: 296 WLYKETG 302
W YKE G
Sbjct: 360 WKYKEGG 366
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P+ ++++
Sbjct: 180 AKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPEEYKRI 219
>gi|421550047|ref|ZP_15996054.1| GTP diphosphokinase [Neisseria meningitidis 69166]
gi|433472066|ref|ZP_20429445.1| relA/SpoT family protein [Neisseria meningitidis 68094]
gi|433478244|ref|ZP_20435558.1| relA/SpoT family protein [Neisseria meningitidis 70012]
gi|433526668|ref|ZP_20483292.1| relA/SpoT family protein [Neisseria meningitidis 69096]
gi|433539537|ref|ZP_20496006.1| relA/SpoT family protein [Neisseria meningitidis 70030]
gi|402330961|gb|EJU66304.1| GTP diphosphokinase [Neisseria meningitidis 69166]
gi|432206991|gb|ELK62989.1| relA/SpoT family protein [Neisseria meningitidis 68094]
gi|432214017|gb|ELK69926.1| relA/SpoT family protein [Neisseria meningitidis 70012]
gi|432259186|gb|ELL14459.1| relA/SpoT family protein [Neisseria meningitidis 69096]
gi|432271924|gb|ELL27042.1| relA/SpoT family protein [Neisseria meningitidis 70030]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|421563906|ref|ZP_16009719.1| GTP-pyrophosphokinase [Neisseria meningitidis NM2795]
gi|402339787|gb|EJU74998.1| GTP-pyrophosphokinase [Neisseria meningitidis NM2795]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|385323657|ref|YP_005878096.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis 8013]
gi|421545027|ref|ZP_15991094.1| GTP pyrophosphokinase [Neisseria meningitidis NM140]
gi|421547117|ref|ZP_15993156.1| GTP pyrophosphokinase [Neisseria meningitidis NM183]
gi|421553323|ref|ZP_15999288.1| GTP pyrophosphokinase [Neisseria meningitidis NM576]
gi|261392044|emb|CAX49536.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase; ppGpp
synthetase I; (P)ppGpp synthetase) [Neisseria
meningitidis 8013]
gi|402322089|gb|EJU57559.1| GTP pyrophosphokinase [Neisseria meningitidis NM183]
gi|402322314|gb|EJU57778.1| GTP pyrophosphokinase [Neisseria meningitidis NM140]
gi|402328455|gb|EJU63826.1| GTP pyrophosphokinase [Neisseria meningitidis NM576]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|254805484|ref|YP_003083705.1| GTP pyrophosphokinase [Neisseria meningitidis alpha14]
gi|254669026|emb|CBA07452.1| GTP pyrophosphokinase [Neisseria meningitidis alpha14]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|339445999|ref|YP_004712003.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Eggerthella sp. YY7918]
gi|338905751|dbj|BAK45602.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Eggerthella sp. YY7918]
Length = 791
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K LYSI+ KM +K G ++YD A+R++V +++ CYS L
Sbjct: 279 GIQAQIMGRPKHLYSIYQKMTKKGKGFSEIYDLIAVRIIV---------KSVKDCYSALG 329
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT+ MH +E+G+AAH
Sbjct: 330 AVHTLWHPMPGRFKDYIAMPKFNMYQSLHTTVIGPAGRPLEVQIRTEDMHRTSEYGVAAH 389
Query: 296 WLYKETGNK 304
W YKE G K
Sbjct: 390 WRYKEKGGK 398
>gi|313667882|ref|YP_004048166.1| GTP pyrophosphokinase [Neisseria lactamica 020-06]
gi|313005344|emb|CBN86777.1| GTP pyrophosphokinase [Neisseria lactamica 020-06]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLTFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPERYREI 223
>gi|385340582|ref|YP_005894454.1| GTP diphosphokinase [Neisseria meningitidis G2136]
gi|416201399|ref|ZP_11619818.1| GTP diphosphokinase [Neisseria meningitidis 961-5945]
gi|421557748|ref|ZP_16003647.1| GTP pyrophosphokinase [Neisseria meningitidis 80179]
gi|433467814|ref|ZP_20425264.1| relA/SpoT family protein [Neisseria meningitidis 87255]
gi|325142894|gb|EGC65257.1| GTP diphosphokinase [Neisseria meningitidis 961-5945]
gi|325198826|gb|ADY94282.1| GTP diphosphokinase [Neisseria meningitidis G2136]
gi|402333911|gb|EJU69207.1| GTP pyrophosphokinase [Neisseria meningitidis 80179]
gi|432201699|gb|ELK57775.1| relA/SpoT family protein [Neisseria meningitidis 87255]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|418029539|ref|ZP_12668077.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
gi|354689845|gb|EHE89818.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1632]
Length = 753
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASS---SLSKDTDD 328
W YK GN Q + + ++ S L KD+ D
Sbjct: 344 WAYKR-GN-FQGVDEKEGGALDISREILELQKDSSD 377
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
L P K R +A ETL I+ LA RLG+ +K +LED+ F + P+ + K+
Sbjct: 155 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWKLEDMSFHYMNPEAYYKI 203
>gi|422911275|ref|ZP_16945901.1| GTP pyrophosphokinase [Vibrio cholerae HE-09]
gi|424660946|ref|ZP_18098193.1| GTP pyrophosphokinase [Vibrio cholerae HE-16]
gi|341631794|gb|EGS56671.1| GTP pyrophosphokinase [Vibrio cholerae HE-09]
gi|408049818|gb|EKG85007.1| GTP pyrophosphokinase [Vibrio cholerae HE-16]
Length = 738
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQS 307
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I VS + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIRDFVSDLRAEMKQLGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|331005362|ref|ZP_08328746.1| GTP pyrophosphokinase [gamma proteobacterium IMCC1989]
gi|330420816|gb|EGG95098.1| GTP pyrophosphokinase [gamma proteobacterium IMCC1989]
Length = 748
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K +YSI+ KM+RK++G +VYD RA+R++V P + CY +L
Sbjct: 259 NIDAEVYGRAKHIYSIWRKMQRKNIGFSEVYDIRAVRILV---------PTTKDCYEVLG 309
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW I EFDDYI PK +GY+SLHTAV GP +EVQIR+ MHE AE+G+ +H
Sbjct: 310 IVHTLWRNIPHEFDDYIAAPKENGYRSLHTAVVGPSQRVIEVQIRSHSMHEEAEYGVCSH 369
Query: 296 WLYKET 301
W YK T
Sbjct: 370 WRYKGT 375
>gi|188534843|ref|YP_001908640.1| GDP/GTP pyrophosphokinase [Erwinia tasmaniensis Et1/99]
gi|188029885|emb|CAO97769.1| GTP pyrophosphokinase [Erwinia tasmaniensis Et1/99]
Length = 744
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPSEFDDYVANPKPNGYQSIHTVVLGPKGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKETG 302
W YKE G
Sbjct: 355 WKYKEGG 361
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P+ ++++
Sbjct: 175 AKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPEEYKRI 214
>gi|433469858|ref|ZP_20427268.1| relA/SpoT family protein [Neisseria meningitidis 98080]
gi|432201927|gb|ELK58000.1| relA/SpoT family protein [Neisseria meningitidis 98080]
Length = 737
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R+++ + CY+ L IVH L
Sbjct: 258 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILID---------TVPECYTTLGIVHSL 308
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 309 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 368
Query: 301 TG 302
G
Sbjct: 369 GG 370
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 181 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 223
>gi|126700359|ref|YP_001089256.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium difficile 630]
gi|254976339|ref|ZP_05272811.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-66c26]
gi|255093724|ref|ZP_05323202.1| putative GTP pyrophosphokinase [Clostridium difficile CIP 107932]
gi|255101915|ref|ZP_05330892.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-63q42]
gi|255307784|ref|ZP_05351955.1| putative GTP pyrophosphokinase [Clostridium difficile ATCC 43255]
gi|255315476|ref|ZP_05357059.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-76w55]
gi|255518139|ref|ZP_05385815.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-97b34]
gi|255651255|ref|ZP_05398157.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-37x79]
gi|260684319|ref|YP_003215604.1| GTP pyrophosphokinase [Clostridium difficile CD196]
gi|260687978|ref|YP_003219112.1| GTP pyrophosphokinase [Clostridium difficile R20291]
gi|296452442|ref|ZP_06894143.1| GTP diphosphokinase [Clostridium difficile NAP08]
gi|296877791|ref|ZP_06901817.1| GTP diphosphokinase [Clostridium difficile NAP07]
gi|306521098|ref|ZP_07407445.1| putative GTP pyrophosphokinase [Clostridium difficile QCD-32g58]
gi|384361963|ref|YP_006199815.1| GTP pyrophosphokinase [Clostridium difficile BI1]
gi|423081063|ref|ZP_17069675.1| GTP diphosphokinase [Clostridium difficile 002-P50-2011]
gi|423085064|ref|ZP_17073522.1| GTP diphosphokinase [Clostridium difficile 050-P50-2011]
gi|423089842|ref|ZP_17078191.1| GTP diphosphokinase [Clostridium difficile 70-100-2010]
gi|115251796|emb|CAJ69631.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium difficile 630]
gi|260210482|emb|CBA64959.1| putative GTP pyrophosphokinase [Clostridium difficile CD196]
gi|260213995|emb|CBE06110.1| putative GTP pyrophosphokinase [Clostridium difficile R20291]
gi|296258772|gb|EFH05666.1| GTP diphosphokinase [Clostridium difficile NAP08]
gi|296431242|gb|EFH17063.1| GTP diphosphokinase [Clostridium difficile NAP07]
gi|357550919|gb|EHJ32724.1| GTP diphosphokinase [Clostridium difficile 050-P50-2011]
gi|357551372|gb|EHJ33162.1| GTP diphosphokinase [Clostridium difficile 002-P50-2011]
gi|357557606|gb|EHJ39140.1| GTP diphosphokinase [Clostridium difficile 70-100-2010]
Length = 735
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 9/117 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K YSI+ KM++K +++D A+R++V + ++ CY++L IVH LW P
Sbjct: 238 RPKHFYSIYRKMQKKHKTFEEIFDLTAVRILVDN---------VKDCYAVLGIVHTLWRP 288
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I G F DYI PKP+ YQSLHT V GPDG LE+QIRT +MH AE+G+AAHW YKE
Sbjct: 289 IPGRFKDYIAMPKPNMYQSLHTTVVGPDGEPLEIQIRTHEMHNIAENGIAAHWKYKE 345
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP KA+ A+ETL I+ +A RLG+ +K ELED + P+ + + + ++ S R
Sbjct: 152 MPPEKAKYKAKETLEIYGGIAHRLGISKIKWELEDRALRFMDPEGYYDLVSRVSMKRSQR 211
>gi|386074939|ref|YP_005989257.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. IPAV]
gi|353458729|gb|AER03274.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
interrogans serovar Lai str. IPAV]
Length = 674
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 81/124 (65%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R K YSI+ KM+ K+ ++++D RA+R++ + ++ CY +L I
Sbjct: 235 IEADVDGRAKHFYSIYRKMKLKEKTFNEIFDLRAIRIITNE---------VKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P G F DYI PK + YQSLHT V GPDG LEVQIRT+ M++ AE+G+AAHW
Sbjct: 286 VHTLWNPAPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEVQIRTRDMNDIAEYGIAAHW 345
Query: 297 LYKE 300
+YKE
Sbjct: 346 IYKE 349
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +AQETL ++ +A RLG++ +K+ELEDL F +L P +++++ ++ S S R
Sbjct: 157 PPEKQRRIAQETLSLYAPIAGRLGIYKIKSELEDLAFQILNPDEYQEVKKNINSKKSER 215
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI++L G+T D A + VGL+ K +NG+++ TEL+ GD +E+
Sbjct: 393 VFVFTPKGEILQLPEGATILDFAFRIHTDVGLKAKGGRINGRMLPLRTELRSGDQIEI 450
>gi|168052096|ref|XP_001778487.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670085|gb|EDQ56660.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 546
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 19/162 (11%)
Query: 150 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 208
G+ ++S+ +EAL + G++ + L R K+LYS++ KM +K ++ D
Sbjct: 224 GLVMSSIRDLDEALR---------VGGVQFIDLCGRPKNLYSVYKKMMKKKRSPDEILDV 274
Query: 209 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 268
R LR++V D+ + CY L++VH+LW I G+ DYIV+ KP+GY+SLHT V
Sbjct: 275 RGLRLIVTDE---------ESCYQALEVVHQLWRCIPGKTKDYIVDSKPNGYKSLHTVVI 325
Query: 269 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISS 310
G DG LEVQIRT KMH AE+GLAAHW YKE ++ + SS
Sbjct: 326 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNSEHSAFSS 367
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 51
ALP K +A+ETL I+ LA+RLG+W+ KAE+EDLCF L+P
Sbjct: 164 ALPSHKQIGIAKETLEIFAPLANRLGIWSWKAEMEDLCFKCLKP 207
>gi|297581075|ref|ZP_06943000.1| GTP pyrophosphokinase [Vibrio cholerae RC385]
gi|297534901|gb|EFH73737.1| GTP pyrophosphokinase [Vibrio cholerae RC385]
Length = 738
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQS 307
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|433500277|ref|ZP_20457266.1| ACT domain protein [Neisseria meningitidis NM174]
gi|432237165|gb|ELK92764.1| ACT domain protein [Neisseria meningitidis NM174]
Length = 538
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 59 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 109
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 110 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 169
Query: 301 TG 302
G
Sbjct: 170 GG 171
>gi|383188618|ref|YP_005198746.1| RelA/SpoT family (p)ppGpp synthetase [Rahnella aquatilis CIP 78.65
= ATCC 33071]
gi|371586876|gb|AEX50606.1| (p)ppGpp synthetase, RelA/SpoT family [Rahnella aquatilis CIP 78.65
= ATCC 33071]
Length = 745
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++V + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GIKVDVYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LEVQIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPRGKTLEVQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|300812618|ref|ZP_07093031.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496399|gb|EFK31508.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 753
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 14/156 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASS---SLSKDTDD 328
W YK GN Q + D ++ L KD+ D
Sbjct: 344 WAYKR-GN-FQGVDEKDGGALDIGREILELQKDSSD 377
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ETL I+ LA RLG+ +K ELED+ F + P+ + K+ + + + S R
Sbjct: 155 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWELEDMSFHYMNPEAYYKIVSMMDAKRSER 214
>gi|407796127|ref|ZP_11143083.1| GTP pyrophosphokinase [Salimicrobium sp. MJ3]
gi|407019481|gb|EKE32197.1| GTP pyrophosphokinase [Salimicrobium sp. MJ3]
Length = 733
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E L R K LYSI+ KM + +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEADLDGRPKHLYSIYKKMVLQSKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTHDMHEIAEYGIAAH 343
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE G + S S +E
Sbjct: 344 WAYKE-GKQSGSTQSFEE 360
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPAEKQRRISNETLEIFAPLAHRLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|322831387|ref|YP_004211414.1| (p)ppGpp synthetase I SpoT/RelA [Rahnella sp. Y9602]
gi|384256502|ref|YP_005400436.1| (p)ppGpp synthetase I [Rahnella aquatilis HX2]
gi|321166588|gb|ADW72287.1| (p)ppGpp synthetase I, SpoT/RelA [Rahnella sp. Y9602]
gi|380752478|gb|AFE56869.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Rahnella aquatilis
HX2]
Length = 745
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++V + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GIKVDVYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LEVQIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPRGKTLEVQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|300718122|ref|YP_003742925.1| GTP pyrophosphokinase [Erwinia billingiae Eb661]
gi|299063958|emb|CAX61078.1| GTP pyrophosphokinase [Erwinia billingiae Eb661]
Length = 742
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 84/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKSLTFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +EVQIRT++MHE AE G+AAH
Sbjct: 295 IVHTLYRHLPSEFDDYVANPKPNGYQSIHTVVLGPKGKTVEVQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKETG 302
W YKE G
Sbjct: 355 WKYKEGG 361
>gi|262404763|ref|ZP_06081318.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio sp. RC586]
gi|262349795|gb|EEY98933.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio sp. RC586]
Length = 738
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
>gi|258626909|ref|ZP_05721713.1| GTP pyrophosphokinase [Vibrio mimicus VM603]
gi|258580832|gb|EEW05777.1| GTP pyrophosphokinase [Vibrio mimicus VM603]
Length = 738
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
>gi|70726288|ref|YP_253202.1| GTP pyrophosphokinase [Staphylococcus haemolyticus JCSC1435]
gi|68447012|dbj|BAE04596.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (PPGPP
synthetase I) ((P)PPGPP synthetase) [Staphylococcus
haemolyticus JCSC1435]
Length = 729
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 21/157 (13%)
Query: 177 MEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 234
M++T +S R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 232 MDITGEISGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAIL 282
Query: 235 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 294
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AA
Sbjct: 283 GLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAA 342
Query: 295 HWLYKETG----------NKLQSISSMDESDIEASSS 321
HW YKE NKL + + E+D +S +
Sbjct: 343 HWAYKEGKTVNEKNQDFQNKLNWLKELAEADHTSSDA 379
>gi|258622335|ref|ZP_05717360.1| GTP pyrophosphokinase [Vibrio mimicus VM573]
gi|262170600|ref|ZP_06038278.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio mimicus MB-451]
gi|424807655|ref|ZP_18233063.1| GTP pyrophosphokinase [Vibrio mimicus SX-4]
gi|258585351|gb|EEW10075.1| GTP pyrophosphokinase [Vibrio mimicus VM573]
gi|261891676|gb|EEY37662.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio mimicus MB-451]
gi|342325597|gb|EGU21377.1| GTP pyrophosphokinase [Vibrio mimicus SX-4]
Length = 738
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
>gi|428219731|ref|YP_007104196.1| (p)ppGpp synthetase I SpoT/RelA [Pseudanabaena sp. PCC 7367]
gi|427991513|gb|AFY71768.1| (p)ppGpp synthetase I, SpoT/RelA [Pseudanabaena sp. PCC 7367]
Length = 746
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 104/187 (55%), Gaps = 18/187 (9%)
Query: 160 EEALEKELLISTSYIPGMEVT---LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG 216
EE L + I S I + +T +S R K LY I+ KM+ + ++YD A+R++V
Sbjct: 231 EERLARVRDILRSRIEQLGLTNFEISGRPKHLYGIYQKMQVRQKKYEEIYDVSAIRIIVE 290
Query: 217 DKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALE 276
+K + CY +L +VH + PI G F DYI PKP+ YQSLHT V GP+G LE
Sbjct: 291 NK---------EACYRVLAVVHDCFRPIPGRFKDYIGLPKPNRYQSLHTVVIGPNGRPLE 341
Query: 277 VQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESD------IEASSSLSKDTDDHN 330
VQIRT +MH AE+G+AAHW YKET + Q+ S DE +E L D + +
Sbjct: 342 VQIRTWEMHHIAEYGIAAHWKYKETNSSHQATSQEDEKFTWLRQLVEWQRELKDDQEYID 401
Query: 331 PLDTDLF 337
L +LF
Sbjct: 402 TLKENLF 408
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP K +A+ET+ I+ LA+RLG+ +K ELEDL F + +++MR+ + + R
Sbjct: 171 LPAPKQANIARETMEIFAPLANRLGIGQIKWELEDLSFKYIDKDAYQQMRSLVVE--NRR 228
Query: 69 NRVGYSRRITTIVSS 83
NR R+ I+ S
Sbjct: 229 NREERLARVRDILRS 243
>gi|269965228|ref|ZP_06179362.1| GTP pyrophosphokinase [Vibrio alginolyticus 40B]
gi|269830214|gb|EEZ84441.1| GTP pyrophosphokinase [Vibrio alginolyticus 40B]
Length = 739
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|189911774|ref|YP_001963329.1| GTP pyrophosphokinase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167776450|gb|ABZ94751.1| GTP pyrophosphokinase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
Length = 684
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K YSI+ KM K+ +++D RA+R++ + I+ CY +L
Sbjct: 234 NIDARIDGRAKHFYSIYRKMVTKEKSFSEIFDLRAVRIIANE---------IKDCYGVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PK + YQSLHT V GPDG +EVQIRT++M+ AE+G+AAH
Sbjct: 285 IVHTLWTPIPGRFKDYIATPKTNLYQSLHTTVFGPDGRPMEVQIRTKEMNAIAENGVAAH 344
Query: 296 WLYKETGNKLQS 307
W YKE+ N +S
Sbjct: 345 WAYKESTNLTRS 356
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P K + +A+E L ++ +A RLG++ +K ELEDL F L P +++++ +++ S R+
Sbjct: 157 PEEKQKRIAKEVLSLYAPIAGRLGVYKVKFELEDLAFQSLHPDEYQEIKKRVSAKKSERD 216
Query: 70 RVGYSRRITTIV 81
Y +I I+
Sbjct: 217 E--YIEKIKIIL 226
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
+ V P GEI+ + G+T D A + VGL + VNG++V TELK GD VE+
Sbjct: 402 IFVFTPKGEIIEMPKGATVLDYAFRIHTDVGLHARGGKVNGRMVTLRTELKSGDQVEI 459
>gi|416159982|ref|ZP_11606028.1| GTP pyrophosphokinase, partial [Neisseria meningitidis N1568]
gi|325128729|gb|EGC51592.1| GTP pyrophosphokinase [Neisseria meningitidis N1568]
Length = 360
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM +K + ++D RA+R++V + CY+ L IVH L
Sbjct: 189 VAGRPKHIYSIYKKMVKKKLSFDGLFDIRAVRILVD---------TVPECYTTLGIVHSL 239
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI GEFDDYI NPK +GY+SLHT + GP+ +EVQIRT MH++ E G+AAHW YKE
Sbjct: 240 WQPIPGEFDDYIANPKGNGYKSLHTVIVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKE 299
Query: 301 TG 302
G
Sbjct: 300 GG 301
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RAVA+ETL I+ LA+RLG+W LK +LEDL F +P+ +R++
Sbjct: 112 RAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPEKYREI 154
>gi|323499991|ref|ZP_08104947.1| GTP pyrophosphokinase [Vibrio sinaloensis DSM 21326]
gi|323314957|gb|EGA68012.1| GTP pyrophosphokinase [Vibrio sinaloensis DSM 21326]
Length = 739
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKGLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 MVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVAAH 353
Query: 296 WLYKETG 302
W YKE G
Sbjct: 354 WKYKEGG 360
>gi|153824096|ref|ZP_01976763.1| GTP pyrophosphokinase [Vibrio cholerae B33]
gi|126518383|gb|EAZ75606.1| GTP pyrophosphokinase [Vibrio cholerae B33]
Length = 472
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQS 307
W YKE + +S
Sbjct: 354 WKYKEGSSAARS 365
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|449143782|ref|ZP_21774605.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio mimicus CAIM
602]
gi|449080780|gb|EMB51691.1| GTP pyrophosphokinase(p)ppGpp synthetase I [Vibrio mimicus CAIM
602]
Length = 738
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
>gi|389730256|ref|ZP_10189422.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 115]
gi|388440729|gb|EIL97077.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter sp. 115]
Length = 712
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ L+ R K +YSI+ KM++K + ++YD RA+RV+V + + CY+ L
Sbjct: 225 GIRAELAGRPKHIYSIWKKMQKKGLEFSELYDIRAVRVLVDN---------VADCYAALG 275
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW + EFDDY+ PK +GY+SLHTAV GP G LEVQIRT +MH E G+AAH
Sbjct: 276 VVHTLWPHLPREFDDYLARPKGNGYRSLHTAVIGPRGKTLEVQIRTHEMHRANELGVAAH 335
Query: 296 WLYKETGN 303
W YKE GN
Sbjct: 336 WRYKEGGN 343
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
ALP + +A+A+ T I LA+RLG+W LK ELEDL F LQP ++R++
Sbjct: 146 ALPEDERQALARLTRDIHAPLANRLGIWQLKWELEDLAFRFLQPDVYRRI 195
>gi|91227845|ref|ZP_01262018.1| GTP pyrophosphokinase [Vibrio alginolyticus 12G01]
gi|91188355|gb|EAS74651.1| GTP pyrophosphokinase [Vibrio alginolyticus 12G01]
Length = 739
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|386816739|ref|ZP_10103957.1| (p)ppGpp synthetase I, SpoT/RelA [Thiothrix nivea DSM 5205]
gi|386421315|gb|EIJ35150.1| (p)ppGpp synthetase I, SpoT/RelA [Thiothrix nivea DSM 5205]
Length = 718
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 17/167 (10%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+ + R K LYSI+ K+ RK VGI ++YD RA+RV+V D CY LD
Sbjct: 241 NINAEVYGRPKHLYSIWKKLCRKHVGIEELYDLRAVRVIVED---------TATCYHALD 291
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+ H W I E+DDYI N K +GYQS+HT V GP+G +E+QIRT++MH +AE G+AAH
Sbjct: 292 VAHEKWWHIPEEYDDYIGNKKANGYQSIHTVVIGPEGKYVEIQIRTREMHRFAELGVAAH 351
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSS 342
W YKE G + ++++ EA +S+ + D N D++L + + +
Sbjct: 352 WHYKEGGKQDRAMN-------EAINSMRRLLDA-NDSDSELMEDFRT 390
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
R VA++T+ ++ LA+RLG+ +K ELEDL F L P ++ + LA
Sbjct: 169 RCVARQTMDLYAPLANRLGISQVKWELEDLSFRFLHPDTYKTIAKSLA 216
>gi|290476631|ref|YP_003469536.1| (p)ppGpp synthetase I [Xenorhabdus bovienii SS-2004]
gi|289175969|emb|CBJ82772.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Xenorhabdus bovienii
SS-2004]
Length = 745
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 93/143 (65%), Gaps = 11/143 (7%)
Query: 160 EEALEKELLISTSYI--PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 217
E+ +EK + Y+ G+ V + R K +YSI+ KM++K +G +++D RA+R+VV
Sbjct: 226 EQYIEKFVTTIRKYMLKEGIPVEIYGRPKHIYSIWRKMQKKSLGFDELFDVRAVRIVV-- 283
Query: 218 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 277
+Q CY+ L IVH + + EFDDY+ N KP+GYQS+HT V GP+G LE+
Sbjct: 284 -------ERLQDCYAALGIVHTHYRHLPDEFDDYVANAKPNGYQSIHTVVLGPNGKTLEI 336
Query: 278 QIRTQKMHEYAEHGLAAHWLYKE 300
QIRT++MH+ AE G+AAHW YKE
Sbjct: 337 QIRTRQMHDDAELGVAAHWKYKE 359
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|405983984|ref|ZP_11042289.1| RelA/SpoT family protein [Slackia piriformis YIT 12062]
gi|404388799|gb|EJZ83881.1| RelA/SpoT family protein [Slackia piriformis YIT 12062]
Length = 788
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 9/124 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K LYSI+ KM ++ G ++YD A+RV+V ++ CYS+L VH L
Sbjct: 279 IAGRPKHLYSIYQKMTKRGKGFSEIYDLIAVRVIV---------KTVKDCYSVLGAVHAL 329
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MH +E+G+AAHW YKE
Sbjct: 330 WHPMPGRFKDYIAMPKLNMYQSLHTTVIGPSGRPLEVQIRTEEMHRMSEYGVAAHWRYKE 389
Query: 301 TGNK 304
G+K
Sbjct: 390 KGSK 393
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 496 SINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 554
+ + ++ LR M+ W+E+ + S L K+ + P EV + P G++M L
Sbjct: 397 AFDRQIAWLRQMVDWQEETKDSREFLSDLKV---------DLAPTEVFVFT-PAGDVMSL 446
Query: 555 RSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
RSGST D A V E G + VNG +V + EL+ GD VE+
Sbjct: 447 RSGSTPVDFAYNVHSEVGNHCVGAKVNGAIVPLSYELQMGDRVEI 491
>gi|357012698|ref|ZP_09077697.1| RelA [Paenibacillus elgii B69]
Length = 731
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 92/154 (59%), Gaps = 11/154 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD ALR++V + I+ CY+ L
Sbjct: 227 GIDGDISGRPKHIYSIYKKMTVKSKQFNEIYDLLALRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH +E+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHRTSEYGVAAH 337
Query: 296 WLYKETGNKLQSISSMDESD-IEASSSLSKDTDD 328
W YKE G + S S D+ I L DT D
Sbjct: 338 WAYKE-GTSVPSGSYEDKMHFIREILELQNDTQD 370
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIADETLEIFCPIAHRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|313123577|ref|YP_004033836.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280140|gb|ADQ60859.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 753
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 11/158 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 333
W YK GN Q + D ++ + + D N D
Sbjct: 344 WAYKR-GN-FQGVDEKDGGALDIGREILELQKDSNNAD 379
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ETL I+ LA RLG+ +K ELED+ F + P+ + K+ + + + S R
Sbjct: 155 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWELEDMSFHYMNPEEYYKIVSMMDAKRSER 214
>gi|386314606|ref|YP_006010771.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella putrefaciens 200]
gi|319427231|gb|ADV55305.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella putrefaciens 200]
Length = 735
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE G
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-G 359
Query: 303 NKLQSISSMDE 313
N S +E
Sbjct: 360 NHSGKQSGYEE 370
>gi|119471911|ref|ZP_01614219.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Alteromonadales
bacterium TW-7]
gi|359451554|ref|ZP_09240955.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20480]
gi|392536915|ref|ZP_10284052.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
marina mano4]
gi|119445284|gb|EAW26574.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Alteromonadales
bacterium TW-7]
gi|358042773|dbj|GAA77204.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20480]
Length = 718
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM +K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAEVYGRPKHIYSIYKKMAQKNYEFDQLFDIRAMRIVV---------DRLQDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQDMHQDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WMYKE 349
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A+ET I+ LA+RLG+ LK ELEDL F L+P ++K+ L
Sbjct: 165 AKETADIFAPLANRLGIGQLKWELEDLSFRYLRPDTYKKIAKQL 208
>gi|345023332|ref|ZP_08786945.1| GTP pyrophosphokinase [Ornithinibacillus scapharcae TW25]
Length = 732
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E +S R K LYSI+ KM +++ +++YD A+RV+V +I+ CY++L
Sbjct: 233 NIEAEISGRPKHLYSIYQKMVKQNKQFNEIYDLLAVRVLVN---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LPP K R A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPPEKQRIKANETLEIFAPLAHRLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|120598070|ref|YP_962644.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella sp. W3-18-1]
gi|146293859|ref|YP_001184283.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella putrefaciens CN-32]
gi|120558163|gb|ABM24090.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. W3-18-1]
gi|145565549|gb|ABP76484.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella putrefaciens CN-32]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE G
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-G 359
Query: 303 NKLQSISSMDE 313
N S +E
Sbjct: 360 NHSGKQSGYEE 370
>gi|355576488|ref|ZP_09045743.1| hypothetical protein HMPREF1008_01720 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816725|gb|EHF01240.1| hypothetical protein HMPREF1008_01720 [Olsenella sp. oral taxon 809
str. F0356]
Length = 777
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 107/185 (57%), Gaps = 18/185 (9%)
Query: 130 LHDLA----KSSEAQKKAKVVQDAGIALTSLVA-CEEALEKELLISTSYIPGMEVTLSSR 184
L DLA + +E ++ A++VQD+ A L+ EL + + G ++T R
Sbjct: 199 LEDLAFFYLEPTEYERVARMVQDSRAQREQDTAEAIRILDGEL--ARVGLAGYQIT--GR 254
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K L+SI+ KM RK +YD ALRV+ P++ CYS+L VH LW P+
Sbjct: 255 PKHLWSIYQKMTRKGKEFSDIYDLIALRVLT---------PSVGDCYSVLGAVHSLWHPL 305
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
G F DY+ PKP+GY+SLHT V G D +E+QIRT +MH+ AE+G+AAHWLYK++G
Sbjct: 306 PGRFKDYVAMPKPNGYRSLHTTVIGSDARPIEIQIRTYEMHDQAEYGIAAHWLYKKSGGS 365
Query: 305 LQSIS 309
+S
Sbjct: 366 RGQMS 370
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
AL P + A+ET+ ++ LA RLG+ ++K ELEDL F L+P + ++
Sbjct: 166 ALKPDRRAFKARETMDVYAPLADRLGISSVKWELEDLAFFYLEPTEYERV 215
>gi|77164804|ref|YP_343329.1| RelA/SpoT protein [Nitrosococcus oceani ATCC 19707]
gi|254434746|ref|ZP_05048254.1| RelA/SpoT family protein [Nitrosococcus oceani AFC27]
gi|76883118|gb|ABA57799.1| RelA/SpoT protein [Nitrosococcus oceani ATCC 19707]
gi|207091079|gb|EDZ68350.1| RelA/SpoT family protein [Nitrosococcus oceani AFC27]
Length = 714
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K LYSI+ KM+ K++ H+++D A RV+V D ++ CY+ L
Sbjct: 226 GIQGQISGRPKHLYSIWKKMQAKNLDFHQLFDVHAFRVIVVD---------VRDCYAALS 276
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW PI EFDDYI +PKP+GY+SLHTAV G +E+QIR+ +MH AE G+A+H
Sbjct: 277 LVHTLWTPIPEEFDDYIAHPKPNGYRSLHTAVFDSAGKPMEIQIRSLQMHGEAELGVASH 336
Query: 296 WLYKE 300
W YKE
Sbjct: 337 WRYKE 341
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 12 AKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
A + +AQETL I+ LA+RLG+W LK ELEDL L+PQ ++++ L R R
Sbjct: 151 ATRQTLAQETLDIFAPLANRLGIWQLKWELEDLALRYLEPQTYQRLTKALNKRQIDRER 209
>gi|262166493|ref|ZP_06034230.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio mimicus VM223]
gi|262026209|gb|EEY44877.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio mimicus VM223]
Length = 678
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 183 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 233
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 234 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 293
Query: 296 WLYKE 300
W YKE
Sbjct: 294 WKYKE 298
>gi|429727583|ref|ZP_19262348.1| putative GTP diphosphokinase [Peptostreptococcus anaerobius VPI
4330]
gi|429151973|gb|EKX94811.1| putative GTP diphosphokinase [Peptostreptococcus anaerobius VPI
4330]
Length = 739
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 85/132 (64%), Gaps = 10/132 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K YSI+ KM++K+ ++YD A+R++V ++ CY +L +VH LW
Sbjct: 237 GRPKHFYSIYRKMKKKNKSFDEIYDLTAVRIIV---------DTVKDCYGVLGVVHTLWK 287
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
P+ G F DYI PKP+ YQSLHT V G DG +E+QIRT++MH+ AE+G AAHW YKE G
Sbjct: 288 PMPGRFKDYIAMPKPNMYQSLHTTVIGADGEPVEIQIRTKEMHQVAEYGFAAHWKYKE-G 346
Query: 303 NKLQSISSMDES 314
+ +S++DE
Sbjct: 347 VTDKDVSALDEK 358
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 495 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 554
++++ K++ R M+ WE+ ++ + D V+ +V + P GE++ L
Sbjct: 353 SALDEKLQWFRMMMEWEKDVKDPHEF--------LDALKDDVLTYQVYVFT-PQGEVIEL 403
Query: 555 RSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
+GST D A KVG VNG++V + LK+GDIVE+
Sbjct: 404 PTGSTTIDFAYRIHSKVGNSCVGAKVNGRIVPLDHILKNGDIVEI 448
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 52
KAR A+ETL I+ +A RLG+ +K ELEDL L P+
Sbjct: 156 KARYKARETLDIYAGIAHRLGIQTIKWELEDLSLRFLDPE 195
>gi|289423171|ref|ZP_06424986.1| GTP diphosphokinase [Peptostreptococcus anaerobius 653-L]
gi|289156502|gb|EFD05152.1| GTP diphosphokinase [Peptostreptococcus anaerobius 653-L]
Length = 739
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 85/132 (64%), Gaps = 10/132 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K YSI+ KM++K+ ++YD A+R++V ++ CY +L +VH LW
Sbjct: 237 GRPKHFYSIYRKMKKKNKSFDEIYDLTAVRIIV---------DTVKDCYGVLGVVHTLWK 287
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
P+ G F DYI PKP+ YQSLHT V G DG +E+QIRT++MH+ AE+G AAHW YKE G
Sbjct: 288 PMPGRFKDYIAMPKPNMYQSLHTTVIGADGEPVEIQIRTKEMHQVAEYGFAAHWKYKE-G 346
Query: 303 NKLQSISSMDES 314
+ +S++DE
Sbjct: 347 VTDKDVSALDEK 358
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 495 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 554
++++ K++ R M+ WE+ ++ + D V+ +V + P GE++ L
Sbjct: 353 SALDEKLQWFRMMMEWEKDVKDPHEF--------LDALKDDVLTYQVYVFT-PQGEVIEL 403
Query: 555 RSGSTAADAAM----KVGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
+GST D A KVG VNG++V + LK+GDIVE+
Sbjct: 404 PTGSTTIDFAYRIHSKVGNSCVGAKVNGRIVPLDHILKNGDIVEI 448
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 52
KAR A+ETL I+ +A RLG+ +K ELEDL L P+
Sbjct: 156 KARYKARETLDIYAGIAHRLGIQTIKWELEDLSLRFLDPE 195
>gi|262393277|ref|YP_003285131.1| GTP pyrophosphokinase [Vibrio sp. Ex25]
gi|451972091|ref|ZP_21925303.1| GTP pyrophosphokinase [Vibrio alginolyticus E0666]
gi|262336871|gb|ACY50666.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio sp. Ex25]
gi|451931929|gb|EMD79611.1| GTP pyrophosphokinase [Vibrio alginolyticus E0666]
Length = 739
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|422845570|ref|ZP_16892280.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|325684220|gb|EGD26396.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 753
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 11/158 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKDFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLD 333
W YK GN Q + D ++ + + D N D
Sbjct: 344 WAYKR-GN-FQGVDEKDGGALDIGREILELQKDSNNAD 379
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ETL I+ LA RLG+ +K ELED+ F + P+ + K+ + + + S R
Sbjct: 155 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWELEDMSFHYMNPEAYYKIVSMMDAKRSER 214
>gi|113969455|ref|YP_733248.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-4]
gi|114046683|ref|YP_737233.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-7]
gi|113884139|gb|ABI38191.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-4]
gi|113888125|gb|ABI42176.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. MR-7]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 304 KLQSISSMDE 313
S +E
Sbjct: 361 HSGKQSGYEE 370
>gi|24374961|ref|NP_719004.1| GTP pyrophosphokinase RelA [Shewanella oneidensis MR-1]
gi|24349682|gb|AAN56448.1| GTP pyrophosphokinase RelA [Shewanella oneidensis MR-1]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 304 KLQSISSMDE 313
S +E
Sbjct: 361 HSGKQSGYEE 370
>gi|418025453|ref|ZP_12664431.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS625]
gi|353535065|gb|EHC04629.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS625]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE G
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-G 359
Query: 303 NKLQSISSMDE 313
N S +E
Sbjct: 360 NHSGKQSGYEE 370
>gi|117919560|ref|YP_868752.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella sp. ANA-3]
gi|117611892|gb|ABK47346.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella sp. ANA-3]
Length = 735
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 10/130 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 251 RPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWHH 301
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE GN
Sbjct: 302 IPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-GN 360
Query: 304 KLQSISSMDE 313
S +E
Sbjct: 361 HSGKQSGYEE 370
>gi|205374215|ref|ZP_03227014.1| GTP diphosphokinase [Bacillus coahuilensis m4-4]
Length = 708
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
LS R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L I+H
Sbjct: 214 LSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 264
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT+ MH AE+G+AAHW YKE
Sbjct: 265 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTRDMHRIAEYGVAAHWAYKE 324
Query: 301 TGNKLQSISSMDE 313
+ S ++ D+
Sbjct: 325 EKEHVASRNTFDK 337
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ET+ I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 131 LPAEKQRRIANETIEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 179
>gi|357038708|ref|ZP_09100505.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum gibsoniae DSM
7213]
gi|355359500|gb|EHG07262.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfotomaculum gibsoniae DSM
7213]
Length = 725
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 13/141 (9%)
Query: 168 LISTSYIPGMEVTLSS----RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 223
+IS + MEV +++ R K+LYSI+ KM+++ + +++YD A+RV+V
Sbjct: 215 IISVLHKKMMEVKINAEIQGRPKNLYSIYMKMQKQQLEFNQIYDVMAVRVLVD------- 267
Query: 224 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 283
+++ CY++L VH LW+PI G F DYI PK + YQSLHT V P G LE+QIRT +
Sbjct: 268 --SVRDCYAVLGTVHTLWVPIPGRFKDYIAMPKSNMYQSLHTTVVSPQGDPLEIQIRTWE 325
Query: 284 MHEYAEHGLAAHWLYKETGNK 304
MH +E+G+AAHW YKE G K
Sbjct: 326 MHRTSEYGIAAHWRYKEGGGK 346
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVG 72
K R +A ETL I+ LA RLG++ LK ELEDL P+ + ++ ADL + + R
Sbjct: 153 KQREIALETLEIFAPLAHRLGIYRLKWELEDLALRFSNPEKYYEL-ADLVAR-TREKREE 210
Query: 73 YSRRITTIV 81
Y R I +++
Sbjct: 211 YIRSIISVL 219
>gi|153004178|ref|YP_001378503.1| (p)ppGpp synthetase I SpoT/RelA [Anaeromyxobacter sp. Fw109-5]
gi|152027751|gb|ABS25519.1| (p)ppGpp synthetase I, SpoT/RelA [Anaeromyxobacter sp. Fw109-5]
Length = 738
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R+K +YSI+ KMR+ DV ++ D RV+V ++ CY L
Sbjct: 243 GINAQVSGRVKHVYSIWRKMRQLDVDFDQIQDVIGFRVIVD---------SVAECYESLG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PKP+ YQSLHT V GP G +EVQIRT++MH AE G+AAH
Sbjct: 294 IIHSLWKPVPGRFKDYIAIPKPNLYQSLHTTVVGPRGERIEVQIRTKEMHRIAEEGVAAH 353
Query: 296 WLYKETG 302
W YKE G
Sbjct: 354 WAYKEKG 360
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
+ P +A+ETL I+ LA+RLG+ LK+ELEDL F L+PQ +
Sbjct: 165 MKPESQERIARETLDIYAPLANRLGIQWLKSELEDLSFKYLRPQDY 210
>gi|354596328|ref|ZP_09014345.1| (p)ppGpp synthetase I, SpoT/RelA [Brenneria sp. EniD312]
gi|353674263|gb|EHD20296.1| (p)ppGpp synthetase I, SpoT/RelA [Brenneria sp. EniD312]
Length = 743
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++YD RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKSLSFDELYDVRAVRIVV---------ERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
>gi|386347702|ref|YP_006045951.1| (p)ppGpp synthetase I SpoT/RelA [Spirochaeta thermophila DSM 6578]
gi|339412669|gb|AEJ62234.1| (p)ppGpp synthetase I, SpoT/RelA [Spirochaeta thermophila DSM 6578]
Length = 662
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++V + R K LYSI+ KM+RK + ++YD +R++ + CY+LL
Sbjct: 231 GIKVEIQMRRKHLYSIYQKMKRKARPLEEIYDVLGIRLLCNTETE---------CYTLLG 281
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVHRL+ P++G F DYI PK + YQSLHT V P G+ +EVQIRT +MH AE+G+AAH
Sbjct: 282 IVHRLYKPLEGRFKDYIAMPKANRYQSLHTTVMVPGGTLVEVQIRTHQMHRTAEYGIAAH 341
Query: 296 WLYKE 300
WLYKE
Sbjct: 342 WLYKE 346
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
LPPAK +A+A E L I+ LA RLG+ +LK ELEDL LQP+++
Sbjct: 153 LPPAKQKAIATECLEIYAPLAERLGMSSLKDELEDLALKHLQPEVY 198
>gi|407002062|gb|EKE18918.1| hypothetical protein ACD_9C00200G0011 [uncultured bacterium]
Length = 494
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Query: 179 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 238
+ R KS+YS+F K+++ D+ I+++YD A+R++V P + CY L IVH
Sbjct: 235 IQADGRAKSIYSLFLKLQKHDMDINRIYDLAAVRIIV---------PEVADCYETLGIVH 285
Query: 239 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 298
+ + P+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHW+Y
Sbjct: 286 KKYRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNEAEFGIAAHWIY 345
Query: 299 KETGNK 304
E +
Sbjct: 346 TENKKR 351
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
LPP K + +AQET+ I+ +A+RLG+ +K +L+DL F L + +
Sbjct: 153 LPPDKQQRIAQETMEIFAPIANRLGIGEIKTQLQDLSFRYLDKENY 198
>gi|302391503|ref|YP_003827323.1| (p)ppGpp synthetase I SpoT/RelA [Acetohalobium arabaticum DSM 5501]
gi|302203580|gb|ADL12258.1| (p)ppGpp synthetase I, SpoT/RelA [Acetohalobium arabaticum DSM
5501]
Length = 734
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 85/142 (59%), Gaps = 14/142 (9%)
Query: 159 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDK 218
C +EK L + G++ + R K LYSI+ KM+RK+ + ++YD ALRV+V D
Sbjct: 228 CISKVEKRL-----NLEGIDAHIYGRPKHLYSIYQKMKRKNKELSEIYDLVALRVIVND- 281
Query: 219 NGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 278
+Q CY +L +H +W PI G DYI PK + YQSLHT V GP G LE+Q
Sbjct: 282 --------VQECYQVLGNIHEIWNPIPGRIKDYIAMPKSNMYQSLHTTVIGPKGEPLEIQ 333
Query: 279 IRTQKMHEYAEHGLAAHWLYKE 300
IRT MH AE+G+AAHW YKE
Sbjct: 334 IRTWDMHRTAEYGVAAHWRYKE 355
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
L K +A+ET+ I+ LA RLG+ LK ELEDL F L+P + ++
Sbjct: 162 LSQQKQERIARETIEIYAPLAHRLGISTLKWELEDLSFKHLEPNKYYEL 210
>gi|91792551|ref|YP_562202.1| RelA/SpoT family protein [Shewanella denitrificans OS217]
gi|91714553|gb|ABE54479.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella denitrificans OS217]
Length = 735
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKDLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MH+ AE G+AAHW YKE
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTEAMHQDAELGVAAHWKYKE 358
>gi|336310558|ref|ZP_08565530.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Shewanella sp.
HN-41]
gi|335866288|gb|EGM71279.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Shewanella sp.
HN-41]
Length = 735
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE G
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-G 359
Query: 303 NKLQSISSMDE 313
N S +E
Sbjct: 360 NHSGKQSGYEE 370
>gi|308048559|ref|YP_003912125.1| (p)ppGpp synthetase I SpoT/RelA [Ferrimonas balearica DSM 9799]
gi|307630749|gb|ADN75051.1| (p)ppGpp synthetase I, SpoT/RelA [Ferrimonas balearica DSM 9799]
Length = 730
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 10/130 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM++K++ +++D RA+R++ +Q CY L
Sbjct: 241 GIRAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII---------AERLQDCYGALG 291
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH W + EFDDYI PKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 292 VVHTHWRHLPNEFDDYIATPKPNGYQSIHTVVMGPQGKTVEIQIRTREMHEDAELGVAAH 351
Query: 296 WLYKE-TGNK 304
W YKE TG K
Sbjct: 352 WKYKEGTGGK 361
>gi|373950482|ref|ZP_09610443.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS183]
gi|386323682|ref|YP_006019799.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica BA175]
gi|333817827|gb|AEG10493.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica BA175]
gi|373887082|gb|EHQ15974.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS183]
Length = 735
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE G
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-G 359
Query: 303 NKLQSISSMDE 313
N S +E
Sbjct: 360 NHSGKQSGYEE 370
>gi|300721893|ref|YP_003711171.1| (p)ppGpp synthetase I [Xenorhabdus nematophila ATCC 19061]
gi|297628388|emb|CBJ88953.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Xenorhabdus
nematophila ATCC 19061]
Length = 745
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 93/143 (65%), Gaps = 11/143 (7%)
Query: 160 EEALEKELLISTSYI--PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 217
E+ +EK ++ Y+ G+ + R K +YSI+ KM++K + +++D RA+R+VV
Sbjct: 226 EQYIEKFIITLRKYMLKEGVRGEIYGRPKHIYSIWRKMQKKSLAFGELFDVRAVRIVV-- 283
Query: 218 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 277
+Q CY+ L IVH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+
Sbjct: 284 -------ERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEI 336
Query: 278 QIRTQKMHEYAEHGLAAHWLYKE 300
QIRT++MH+ AE G+AAHW YKE
Sbjct: 337 QIRTRQMHDDAELGVAAHWKYKE 359
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|116513948|ref|YP_812854.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093263|gb|ABJ58416.1| Guanosine polyphosphate pyrophosphohydrolase/synthetase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 754
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 234 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 285 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 344
Query: 296 WLYKETGN 303
W YK GN
Sbjct: 345 WAYKR-GN 351
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 5 FSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASM 64
+ L P K R +A ETL I+ LA RLG+ +K +LED+ F + P+ + K+ + + +
Sbjct: 152 LEHLLRPDKQRRIAAETLDIYAPLADRLGIGTIKWKLEDMSFHYMNPEAYYKIVSMMDAK 211
Query: 65 WSPR 68
S R
Sbjct: 212 RSER 215
>gi|359453120|ref|ZP_09242444.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20495]
gi|358049751|dbj|GAA78693.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20495]
Length = 718
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM +K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAEVYGRPKHIYSIYKKMAQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQDMHQDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WIYKE 349
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A+ET I+ LA+RLG+ LK ELEDL F L+P I++ + L
Sbjct: 165 AKETADIFAPLANRLGIGQLKWELEDLSFRYLRPDIYKNIAKQL 208
>gi|297623247|ref|YP_003704681.1| (p)ppGpp synthetase I SpoT/RelA [Truepera radiovictrix DSM 17093]
gi|297164427|gb|ADI14138.1| (p)ppGpp synthetase I, SpoT/RelA [Truepera radiovictrix DSM 17093]
Length = 729
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 11/148 (7%)
Query: 155 SLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV 214
S+ EE L +E G+ +S R K LYS++ KM+R + +++D A+R +
Sbjct: 219 SIALLEERLAQE---------GLTFEISGRSKGLYSVYRKMQRDAKNLDQIFDLMAIRAI 269
Query: 215 VGDKNG--TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDG 272
+ G ++ CY L I+H +W PI G F DY+ PKP+GYQSLHT V G G
Sbjct: 270 LTPTGGGESVEDEEKAICYRALGIIHSIWTPIPGRFKDYVAVPKPNGYQSLHTTVIGLQG 329
Query: 273 SALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+EVQIRT++MHE AE+G+AAHW YK+
Sbjct: 330 QPIEVQIRTRRMHEIAEYGVAAHWAYKQ 357
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+PP K R +A+ETL I+ LA RLG+ +K+ELE+L F L+P+ +R ++ + + R
Sbjct: 153 MPPEKQRRIARETLEIFAPLAHRLGINHIKSELEELGFFYLEPERYRALQRQVRMRRAER 212
Query: 69 NRVGYSRRITTIVSSPPLDERTASDDESF 97
Y +R + L+ER A + +F
Sbjct: 213 E--AYVQRSIAL-----LEERLAQEGLTF 234
>gi|331090444|ref|ZP_08339325.1| hypothetical protein HMPREF1025_02908 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336440256|ref|ZP_08619849.1| hypothetical protein HMPREF0990_02243 [Lachnospiraceae bacterium
1_1_57FAA]
gi|330401191|gb|EGG80784.1| hypothetical protein HMPREF1025_02908 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336013722|gb|EGN43596.1| hypothetical protein HMPREF0990_02243 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 767
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 261 IEAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 311
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 312 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 371
Query: 297 LYKETGNKLQSISSMD 312
YKE G+ +S+ S +
Sbjct: 372 KYKEGGDSAKSMESQE 387
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+ P K + A+ET+ I+ +A RLG+ +K EL+DL +P+++ + DL + R
Sbjct: 182 MTPTKQQEKARETMDIYAPIAQRLGISKIKTELDDLSLKYWKPEVYYNLVRDLNRRKTER 241
>gi|153001657|ref|YP_001367338.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella baltica OS185]
gi|151366275|gb|ABS09275.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella baltica OS185]
Length = 735
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 83/131 (63%), Gaps = 10/131 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWRKMKGKHLKFDELFDVRAVRIVTD---------RLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRTQ MHE AE G+AAHW YKE G
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTQDMHEDAELGVAAHWKYKE-G 359
Query: 303 NKLQSISSMDE 313
N S +E
Sbjct: 360 NHSGKQSGYEE 370
>gi|295106146|emb|CBL03689.1| (p)ppGpp synthetase, RelA/SpoT family [Gordonibacter pamelaeae
7-10-1-b]
Length = 802
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K LYSI+ KM +K G ++YD A+R++V P+++ CY L
Sbjct: 285 GITAQIMGRPKHLYSIYQKMTQKGKGFSEIYDLIAVRIIV---------PSVKDCYLALG 335
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT+ MH +E+G+AAH
Sbjct: 336 AVHTLWHPMPGRFKDYIAMPKYNMYQSLHTTVIGPAGRPLEVQIRTEDMHRQSEYGVAAH 395
Query: 296 WLYKETGNK 304
W YKE G K
Sbjct: 396 WRYKEKGGK 404
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 496 SINNKVRLLRTMLRWEEQLR-SEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 554
+I+ ++ LR M+ W+++ + S L+ K+ + P EV + P GE M L
Sbjct: 408 AIDQQLAWLRQMVDWQDETQDSREFLKDLKV---------DLAPSEVFVFT-PKGEAMSL 457
Query: 555 RSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
R+GST D A + E G + VNG +V EL+ GD VE+
Sbjct: 458 RAGSTPVDFAYAIHTEVGNHCVGAKVNGAIVPLTYELQLGDRVEI 502
>gi|326390128|ref|ZP_08211689.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus JW
200]
gi|325993776|gb|EGD52207.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus JW
200]
Length = 719
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 552 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP K + A+ETL I+ +A RLG+ +K ELEDLC L P+ + + +A+ R
Sbjct: 149 LPLDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKER 208
Query: 69 NRVGYSRRITTI 80
ITTI
Sbjct: 209 EEF-IQNIITTI 219
>gi|418036575|ref|ZP_12674991.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
gi|354687625|gb|EHE87705.1| GTP diphosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
CNCM I-1519]
Length = 753
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 296 WLYKETGN 303
W YK GN
Sbjct: 344 WAYKR-GN 350
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ETL I+ LA RLG+ +K +LED+ F + P+ + K+ + + + S R
Sbjct: 155 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWKLEDMSFHYMNPEAYYKIVSMMDAKRSER 214
>gi|390951903|ref|YP_006415662.1| RelA/SpoT family (p)ppGpp synthetase [Thiocystis violascens DSM
198]
gi|390428472|gb|AFL75537.1| (p)ppGpp synthetase, RelA/SpoT family [Thiocystis violascens DSM
198]
Length = 745
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K +YSI+ KMRRK V I +++D RA+R++V + CY+ L
Sbjct: 249 GIAAEITGRPKHIYSIWKKMRRKAVDIEEIFDLRAVRILV---------KTVADCYAALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI PK + YQSLHTAV GP LEVQIRT +MH +AE G+AAH
Sbjct: 300 LVHGLWKHIPKEFDDYIATPKGNLYQSLHTAVVGPGDKPLEVQIRTHEMHRHAEFGVAAH 359
Query: 296 WLYKE 300
W YKE
Sbjct: 360 WAYKE 364
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P + +A++T ++ LA+RLG+W +K ELEDL LQP ++++ + LA R
Sbjct: 171 LEPERRTKIARDTQRVYAPLANRLGIWQVKWELEDLSLRYLQPDEYKRIASLLAERREER 230
Query: 69 NR 70
+
Sbjct: 231 EQ 232
>gi|414071298|ref|ZP_11407269.1| GTP pyrophosphokinase [Pseudoalteromonas sp. Bsw20308]
gi|410806262|gb|EKS12257.1| GTP pyrophosphokinase [Pseudoalteromonas sp. Bsw20308]
Length = 718
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM +K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAEVYGRPKHIYSIYKKMAQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRTQ MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTQDMHQDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WIYKE 349
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A+ET I+ LA+RLG+ LK ELEDL F L+P I++ + L
Sbjct: 165 AKETADIFAPLANRLGIGQLKWELEDLSFRYLRPDIYKNIAKQL 208
>gi|325282797|ref|YP_004255338.1| (p)ppGpp synthetase I, SpoT/RelA [Deinococcus proteolyticus MRP]
gi|324314606|gb|ADY25721.1| (p)ppGpp synthetase I, SpoT/RelA [Deinococcus proteolyticus MRP]
Length = 764
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 84/138 (60%), Gaps = 13/138 (9%)
Query: 179 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV-----VGDKNGT--------LHGP 225
+ +S R K L+SIF KMRR+ + +++D ALRV+ V + GT
Sbjct: 250 IDISGRSKHLWSIFGKMRREGKALEQIFDLMALRVILTPRRVEAREGTDPERLARAEEMR 309
Query: 226 AIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMH 285
+ CY + IVH LW P+ G F DYI PKP+GYQSLHT V G G +E+QIR+ +MH
Sbjct: 310 EKRICYHTISIVHSLWTPLPGRFKDYIAVPKPNGYQSLHTTVIGKSGQPIEIQIRSSRMH 369
Query: 286 EYAEHGLAAHWLYKETGN 303
E AE+G+AAHW+YK+ G
Sbjct: 370 EVAEYGVAAHWMYKQGGQ 387
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
A+PP K + +++ET+ ++ LA RLG+ +K ELEDL F L P+ + ++R+ L
Sbjct: 162 AMPPEKQKRISRETMEVFAPLAHRLGIGQVKWELEDLSFRYLYPEEYAELRSRLRMQLDE 221
Query: 68 RNRV 71
R+ +
Sbjct: 222 RDGI 225
>gi|311031524|ref|ZP_07709614.1| GTP pyrophosphokinase [Bacillus sp. m3-13]
Length = 732
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 11/126 (8%)
Query: 177 MEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 234
+E+T LS R K +YSI+ KM +++ ++YD A+R++V +I+ CY++L
Sbjct: 232 VEITAELSGRPKHIYSIYRKMAKQNKQFSEIYDLLAVRIIVN---------SIKDCYAVL 282
Query: 235 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 294
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MH+ AE+G+AA
Sbjct: 283 GIIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTSDMHQIAEYGIAA 342
Query: 295 HWLYKE 300
HW YKE
Sbjct: 343 HWAYKE 348
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|317502040|ref|ZP_07960222.1| GTP diphosphokinase [Lachnospiraceae bacterium 8_1_57FAA]
gi|316896514|gb|EFV18603.1| GTP diphosphokinase [Lachnospiraceae bacterium 8_1_57FAA]
Length = 774
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 268 IEAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 318
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 319 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 378
Query: 297 LYKETGNKLQSISSMD 312
YKE G+ +S+ S +
Sbjct: 379 KYKEGGDSAKSMESQE 394
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+ P K + A+ET+ I+ +A RLG+ +K EL+DL +P+++ + DL + R
Sbjct: 189 MTPTKQQEKARETMDIYAPIAQRLGISKIKTELDDLSLKYWKPEVYYNLVRDLNRRKTER 248
>gi|442804848|ref|YP_007372997.1| GTP pyrophosphokinase RelA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740698|gb|AGC68387.1| GTP pyrophosphokinase RelA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 759
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K LYSI+ KM+R+ + ++YD A+RV+V ++ CY++L
Sbjct: 261 GIEAHIDGRPKHLYSIYMKMKRQHKELDQIYDLFAIRVIVN---------TVKDCYAVLG 311
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH L+ P+ G F DYI PKP+ YQSLHT V GP+G EVQIRT +MH AE G+AAH
Sbjct: 312 LVHELYKPMPGRFKDYISMPKPNMYQSLHTTVIGPEGIPFEVQIRTWEMHRIAEVGIAAH 371
Query: 296 WLYKETGNKLQSIS 309
W YKE G + +S
Sbjct: 372 WKYKEGGRQNDDLS 385
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P K +AQETL I+ LA RLG++ +K ELEDL F L + + + +A +
Sbjct: 184 PREKQIEIAQETLDIYAPLAHRLGIYKVKWELEDLSFRYLHEKEYYDLAEKIAK--KRKE 241
Query: 70 RVGYSRRITTIVSSPPLD 87
R Y I V+ ++
Sbjct: 242 REEYIENIMKTVAEKAME 259
>gi|408791615|ref|ZP_11203225.1| putative GTP diphosphokinase [Leptospira meyeri serovar Hardjo str.
Went 5]
gi|408463025|gb|EKJ86750.1| putative GTP diphosphokinase [Leptospira meyeri serovar Hardjo str.
Went 5]
Length = 684
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 80/127 (62%), Gaps = 9/127 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ + R K YSI+ KM K+ +++D RA+R++ + I+ CY +L I
Sbjct: 235 IDARIDGRAKHFYSIYRKMVTKEKSFSEIFDLRAVRIITNE---------IKDCYGVLGI 285
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW PI G F DYI PK + YQSLHT V GPDG +EVQIRT+ M+ AE+G+AAHW
Sbjct: 286 VHTLWTPIPGRFKDYIATPKTNLYQSLHTTVFGPDGRPMEVQIRTKDMNAIAENGVAAHW 345
Query: 297 LYKETGN 303
YKE+ N
Sbjct: 346 AYKESTN 352
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P K + +A+E L ++ +A RLG++ +K ELEDL F L P+ +++++ +++ S R+
Sbjct: 157 PEEKQKRIAKEVLSLYAPIAGRLGVYKVKFELEDLAFQSLHPEEYQEIKKRVSAKKSERD 216
Query: 70 RVGYSRRITTIV 81
Y +I I+
Sbjct: 217 E--YIEKIKIIL 226
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
V V P GEI+ + G+T D A + VGL + VNG++V TELK GD VE+
Sbjct: 402 VFVFTPKGEIIEMPKGATVLDYAFRIHTDVGLHARGGKVNGRMVTLRTELKSGDQVEI 459
>gi|282899912|ref|ZP_06307873.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Cylindrospermopsis raciborskii CS-505]
gi|281195182|gb|EFA70118.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Cylindrospermopsis raciborskii CS-505]
Length = 756
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K LYSI+ KM+R+ H++YD ALR++V + CY L +VH
Sbjct: 254 ISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVETN---------EECYRALAVVHDA 304
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 305 FCPIPGRFKDYIGLPKPNRYQSLHTCVIGLTGRPLEVQIRTMEMHHVAEYGIAAHWKYKE 364
Query: 301 TGNKLQSISSMDE 313
TG ++ DE
Sbjct: 365 TGGSTAQVTGTDE 377
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
R AQET I+ LA+RLG+W +K ELEDL F L+P +R+++ +A + R
Sbjct: 176 RRSAQETRDIFAPLANRLGIWHIKWELEDLAFKYLEPDAYREIQEHVAEKRTAR 229
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 491 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 550
T+ + K LR +L W+ L+ S K N D V V P G+
Sbjct: 369 TAQVTGTDEKFAWLRQLLDWQSDLKDAQEYLDSV---KDNLFEDDVY------VFTPKGD 419
Query: 551 IMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
++ L GST+ D A + VG VNG++V +T L++GDIV++
Sbjct: 420 VVALSPGSTSIDFAYRIHTEVGNHCAGARVNGRIVPLSTRLQNGDIVDI 468
>gi|153819814|ref|ZP_01972481.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase), partial [Vibrio
cholerae NCTC 8457]
gi|126509633|gb|EAZ72227.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Vibrio cholerae
NCTC 8457]
Length = 391
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 9/132 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 82 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 132
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 133 IVHTKYKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 192
Query: 296 WLYKETGNKLQS 307
W YKE + +S
Sbjct: 193 WKYKEGSSAARS 204
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P R A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 5 PDEVRRVAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 59
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I VS + + + + + +H+ S+ + + + + FD L D R
Sbjct: 60 RIVREQYIRDFVSDLRAEMKQSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 115
>gi|195953734|ref|YP_002122024.1| (p)ppGpp synthetase I SpoT/RelA [Hydrogenobaculum sp. Y04AAS1]
gi|195933346|gb|ACG58046.1| (p)ppGpp synthetase I, SpoT/RelA [Hydrogenobaculum sp. Y04AAS1]
Length = 703
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 81/123 (65%), Gaps = 9/123 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
T+ R K +YSI+ K++RK++ + + D +RV+V D + CY++L IVH
Sbjct: 240 TIQYRQKHIYSIYQKLKRKNLSLEDLQDILGIRVIVED---------VAECYTVLGIVHS 290
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
++ PI G FDDYI PKP+ YQSLHTAV+GP +EVQIRT +MHE AE G+AAHW YK
Sbjct: 291 IFRPIPGSFDDYISLPKPNMYQSLHTAVEGPKKRVVEVQIRTYEMHERAEKGIAAHWAYK 350
Query: 300 ETG 302
E
Sbjct: 351 ENS 353
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+P K +A ET+ I+ +A RLG+W++K ELEDL P+ + K++
Sbjct: 153 MPRHKQLEIANETIDIYAPIAHRLGIWSIKKELEDLYLKYTHPEEYEKIK 202
>gi|345017525|ref|YP_004819878.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032868|gb|AEM78594.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 719
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 552 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP K + A+ETL I+ +A RLG+ +K ELEDLC L P+ + + +A+ R
Sbjct: 149 LPLDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKER 208
Query: 69 NRVGYSRRITTI 80
ITTI
Sbjct: 209 EEF-IQNIITTI 219
>gi|104773939|ref|YP_618919.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|103423020|emb|CAI97706.1| GTP pyrophosphokinase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 753
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 233 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 284 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 343
Query: 296 WLYKETGN 303
W YK GN
Sbjct: 344 WAYKR-GN 350
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ETL I+ LA RLG+ +K +LED+ F + P+ + K+ + + + S R
Sbjct: 155 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWKLEDMSFHYMNPEAYYKIVSMMDAKRSER 214
>gi|385815572|ref|YP_005851963.1| ppGpp synthetase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|325125609|gb|ADY84939.1| ppGpp synthetase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 738
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K +++YD A+RV+V P ++ CY++L
Sbjct: 218 GIKYDISGRPKHIYSIYKKMVNKHKNFNEIYDLLAVRVIV---------PTVKDCYAVLG 268
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH W P+ G F DYI PK +GYQSLHT + GP G LE+QIRT++MH+ AE+G+AAH
Sbjct: 269 AVHTKWKPMPGRFKDYIAMPKANGYQSLHTTIIGPGGKPLEIQIRTEEMHKVAEYGVAAH 328
Query: 296 WLYKETGN 303
W YK GN
Sbjct: 329 WAYKR-GN 335
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ETL I+ LA RLG+ +K +LED+ F + P+ + K+ + + + S R
Sbjct: 140 LRPDKQRRIAAETLDIYAPLADRLGIGTIKWKLEDMSFHYMNPEAYYKIVSMMDAKRSER 199
>gi|226328918|ref|ZP_03804436.1| hypothetical protein PROPEN_02820 [Proteus penneri ATCC 35198]
gi|225202104|gb|EEG84458.1| RelA/SpoT family protein [Proteus penneri ATCC 35198]
Length = 745
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++V + R K +YSI+ KM++K++ +++D RA+R+VV +Q CY+ L
Sbjct: 244 NVDVDIYGRPKHIYSIWRKMKKKNLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 77
A+E I+ LA+RLG+ LK ELED CF L P ++K +AS+ R R+ + I
Sbjct: 175 AKECFNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKK----IASLLHER-RIDREQYI 229
Query: 78 TTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
VS+ + + D +H+ S+ + + + + FD L D R
Sbjct: 230 DNFVSTVRGYMKEENVDVDIYGRPKHIYSIWRKMKKKNLAFDELFDVR 277
>gi|335041192|ref|ZP_08534308.1| (p)ppGpp synthetase I, SpoT/RelA [Caldalkalibacillus thermarum
TA2.A1]
gi|334178990|gb|EGL81639.1| (p)ppGpp synthetase I, SpoT/RelA [Caldalkalibacillus thermarum
TA2.A1]
Length = 721
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+ + +++YD A+R++V ++ CY++L
Sbjct: 227 GIKAEISGRPKHIYSIYRKMQEQKKAFNEIYDLMAIRIIV---------ETVRDCYAVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V G LEVQIRT +MH AE+G+AAH
Sbjct: 278 IIHTCWKPLPGRFKDYIAMPKPNMYQSLHTTVMSYKGQPLEVQIRTHEMHRTAEYGIAAH 337
Query: 296 WLYKETGN-KLQSISSMDE 313
W YKE N K S S++DE
Sbjct: 338 WAYKEGKNLKETSPSALDE 356
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+P K R A+ETL I+ LA RLG+ +K ELED+ L PQ + ++
Sbjct: 149 MPEEKRRKKAEETLEIFAPLAHRLGISTIKWELEDISLRYLNPQQYYRI 197
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 540 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
+VV V P G+++ L +GS D A ++ E G + VNG++V + ELK GDIVE+
Sbjct: 388 DVVFVFTPKGDVIELPAGSVPLDFAYRIHTEVGNRCVGAKVNGKIVPLDHELKTGDIVEI 447
>gi|332981509|ref|YP_004462950.1| (p)ppGpp synthetase I SpoT/RelA [Mahella australiensis 50-1 BON]
gi|332699187|gb|AEE96128.1| (p)ppGpp synthetase I, SpoT/RelA [Mahella australiensis 50-1 BON]
Length = 719
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E T+ R K YSI+ KM+ + ++YD A+RV+V ++ CY++L
Sbjct: 226 GIEATVDGRPKHFYSIYKKMKYQGKAFEQIYDLMAVRVIVN---------TVRDCYAVLG 276
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PKP+ YQSLHT V GP G +E+Q+RT MH AE+G+AAH
Sbjct: 277 LIHTIWKPIPGRFKDYIAVPKPNMYQSLHTTVVGPQGEPVEIQVRTWDMHRTAEYGIAAH 336
Query: 296 WLYKE 300
W YKE
Sbjct: 337 WKYKE 341
>gi|297544507|ref|YP_003676809.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842282|gb|ADH60798.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 719
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKSFDQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LPP K + A+ETL I+ +A RLG+ +K ELEDLC L P + + +A+ R
Sbjct: 149 LPPDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPDEYYDLVEKVAAKRKER 208
Query: 69 NRVGYSRRITTI 80
+ ITTI
Sbjct: 209 EEL-IQNIITTI 219
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDKFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 552 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A + E L VNG+LV N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPVDFAYSIHTEIGHRLNGAKVNGKLVPINYQLKNGDIVEILV 445
>gi|251788452|ref|YP_003003173.1| GDP/GTP pyrophosphokinase [Dickeya zeae Ech1591]
gi|247537073|gb|ACT05694.1| (p)ppGpp synthetase I, SpoT/RelA [Dickeya zeae Ech1591]
Length = 745
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GLKAEIYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|167037441|ref|YP_001665019.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115854|ref|YP_004186013.1| RelA/SpoT family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856275|gb|ABY94683.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928945|gb|ADV79630.1| RelA/SpoT family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 719
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 552 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP K + A+ETL I+ +A RLG+ +K ELEDLC L P+ + + +A+ R
Sbjct: 149 LPLDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKER 208
Query: 69 NRVGYSRRITTI 80
ITTI
Sbjct: 209 EEF-IQNIITTI 219
>gi|300914191|ref|ZP_07131507.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X561]
gi|307724574|ref|YP_003904325.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter sp. X513]
gi|300889126|gb|EFK84272.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X561]
gi|307581635|gb|ADN55034.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter sp. X513]
Length = 719
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 494 EASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMR 553
E + K+ LR +L W+++L+ ++ K + D V V P G+++
Sbjct: 347 EDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDVIN 397
Query: 554 LRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 597
L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 398 LPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP K + A+ETL I+ +A RLG+ +K ELEDLC L P + + +A+ R
Sbjct: 149 LPLDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPDEYYDLVEKVAAKRKER 208
Query: 69 NRVGYSRRITTI 80
ITTI
Sbjct: 209 EEF-IQNIITTI 219
>gi|452944533|ref|YP_007500698.1| (p)ppGpp synthetase I, SpoT/RelA [Hydrogenobaculum sp. HO]
gi|452882951|gb|AGG15655.1| (p)ppGpp synthetase I, SpoT/RelA [Hydrogenobaculum sp. HO]
Length = 703
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 81/123 (65%), Gaps = 9/123 (7%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
T+ R K +YSI+ K++RK++ + + D +RV+V D + CY++L IVH
Sbjct: 240 TIQYRQKHIYSIYQKLKRKNLSLEDLQDILGIRVIVED---------VAECYTVLGIVHS 290
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
++ PI G FDDYI PKP+ YQSLHTAV+GP +EVQIRT +MHE AE G+AAHW YK
Sbjct: 291 IFRPIPGSFDDYISLPKPNMYQSLHTAVEGPKKRVVEVQIRTYEMHERAEKGIAAHWAYK 350
Query: 300 ETG 302
E
Sbjct: 351 ENS 353
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+P K +A ET+ I+ +A RLG+W++K ELEDL P+ + K++
Sbjct: 153 MPRHKQLEIANETIDIYAPIAHRLGIWSIKKELEDLYLKYTHPEEYEKIK 202
>gi|392941128|ref|ZP_10306772.1| LOW QUALITY PROTEIN: (p)ppGpp synthetase, RelA/SpoT family
[Thermoanaerobacter siderophilus SR4]
gi|392292878|gb|EIW01322.1| LOW QUALITY PROTEIN: (p)ppGpp synthetase, RelA/SpoT family
[Thermoanaerobacter siderophilus SR4]
Length = 719
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 552 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP K + A+ETL I+ +A RLG+ +K ELEDLC L P+ + + +A+ R
Sbjct: 149 LPLDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKER 208
Query: 69 NRVGYSRRITTI 80
ITTI
Sbjct: 209 EEF-IQNIITTI 219
>gi|308174461|ref|YP_003921166.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens DSM 7]
gi|307607325|emb|CBI43696.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens DSM
7]
Length = 734
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRILVG---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|153816124|ref|ZP_01968792.1| hypothetical protein RUMTOR_02372 [Ruminococcus torques ATCC 27756]
gi|145846609|gb|EDK23527.1| RelA/SpoT family protein [Ruminococcus torques ATCC 27756]
Length = 438
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 268 IEAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIVD---------SVKDCYAALGV 318
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 319 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 378
Query: 297 LYKETGNKLQSISSMD 312
YKE G+ +S+ S +
Sbjct: 379 KYKEGGDSAKSMESQE 394
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
+ P K + A+ET+ I+ +A RLG+ +K EL+DL +P+++ + DL
Sbjct: 189 MTPTKQQEKARETMDIYAPIAQRLGISKIKTELDDLSLKYWKPEVYYNLVRDL 241
>gi|332295059|ref|YP_004436982.1| (p)ppGpp synthetase I SpoT/RelA [Thermodesulfobium narugense DSM
14796]
gi|332178162|gb|AEE13851.1| (p)ppGpp synthetase I, SpoT/RelA [Thermodesulfobium narugense DSM
14796]
Length = 779
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 91/155 (58%), Gaps = 13/155 (8%)
Query: 160 EEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVG-DK 218
+E+ +KEL + R K +YS++ K++R + I +YD LR+++G D
Sbjct: 271 QESFQKEL--------NCNFKIKRRKKHIYSVYQKLKRTNKNIDDIYDIFGLRIIIGEDV 322
Query: 219 NGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 278
G P I CY +L I+H L+ PI G F D+I PKP+ YQSLHT V GP G +E+Q
Sbjct: 323 EG--EDPYISSCYHVLGIIHSLFPPIPGRFKDFIAAPKPNNYQSLHTTVLGPGGVRVEIQ 380
Query: 279 IRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 313
IRT +M AE G+AAHWLYKE K SI ++E
Sbjct: 381 IRTARMDRIAEVGVAAHWLYKE--RKTSSIRDINE 413
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L K +A ETL I+ LA RLG+WA+K+ELEDL L +F + + + +
Sbjct: 200 LASEKKEHIANETLKIFAPLAHRLGMWAIKSELEDLALYYLDRDMFNHILMYMEA--NIN 257
Query: 69 NRVGYSRRITTIV 81
N V + +I I+
Sbjct: 258 NHVNFLSKIEGIL 270
>gi|384165231|ref|YP_005546610.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens LL3]
gi|328912786|gb|AEB64382.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens LL3]
Length = 734
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRILVG---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|384160293|ref|YP_005542366.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens
TA208]
gi|384169371|ref|YP_005550749.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens XH7]
gi|328554381|gb|AEB24873.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens
TA208]
gi|341828650|gb|AEK89901.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens XH7]
Length = 734
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRILVG---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|289578226|ref|YP_003476853.1| (p)ppGpp synthetase I SpoT/RelA [Thermoanaerobacter italicus Ab9]
gi|289527939|gb|ADD02291.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter italicus Ab9]
Length = 719
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKSFDQIYDLLAVRIIVN---------TVKECYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LPP K + A+ETL I+ +A RLG+ +K ELEDLC L P + + +A+ R
Sbjct: 149 LPPDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPDEYYDLVEKVAAKRKER 208
Query: 69 NRVGYSRRITTI 80
+ ITTI
Sbjct: 209 EEL-IQNIITTI 219
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDKFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 552 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A + E L VNG+LV N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPVDFAYSIHTEIGHRLNGAKVNGKLVPINYQLKNGDIVEILV 445
>gi|242373934|ref|ZP_04819508.1| GTP pyrophosphokinase [Staphylococcus epidermidis M23864:W1]
gi|242348358|gb|EES39960.1| GTP pyrophosphokinase [Staphylococcus epidermidis M23864:W1]
Length = 734
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 243 ISGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 293
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 294 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 353
Query: 301 TG----------NKLQSISSMDESD 315
NKL + + E+D
Sbjct: 354 GKTVNEKTQDFQNKLNWLKELAETD 378
>gi|224476731|ref|YP_002634337.1| GTP pyrophosphokinase [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421338|emb|CAL28152.1| GTP pyrophosphokinase [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 729
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 86/130 (66%), Gaps = 10/130 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V +I+ CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAVRIIVD---------SIKDCYAVLGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRTQ+MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTQEMHEIAEHGVAAHWAYKE 348
Query: 301 TGNKLQSISS 310
G K+ +S
Sbjct: 349 -GKKVTDDNS 357
>gi|154686901|ref|YP_001422062.1| RelA [Bacillus amyloliquefaciens FZB42]
gi|375363176|ref|YP_005131215.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|384266310|ref|YP_005422017.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|385265645|ref|ZP_10043732.1| GTP diphosphokinase [Bacillus sp. 5B6]
gi|387899344|ref|YP_006329640.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens Y2]
gi|394991954|ref|ZP_10384748.1| RelA [Bacillus sp. 916]
gi|421730833|ref|ZP_16169959.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|429506052|ref|YP_007187236.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|451346089|ref|YP_007444720.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens IT-45]
gi|452856418|ref|YP_007498101.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|154352752|gb|ABS74831.1| RelA [Bacillus amyloliquefaciens FZB42]
gi|371569170|emb|CCF06020.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|380499663|emb|CCG50701.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|385150141|gb|EIF14078.1| GTP diphosphokinase [Bacillus sp. 5B6]
gi|387173454|gb|AFJ62915.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens Y2]
gi|393807166|gb|EJD68491.1| RelA [Bacillus sp. 916]
gi|407074987|gb|EKE47974.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|429487642|gb|AFZ91566.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|449849847|gb|AGF26839.1| GTP pyrophosphokinase [Bacillus amyloliquefaciens IT-45]
gi|452080678|emb|CCP22443.1| GTP pyrophosphokinase (RelA/SpoT) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 734
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRILVG---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|52081239|ref|YP_080030.1| GTP pyrophosphokinase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319644794|ref|ZP_07999027.1| GTP pyrophosphokinase [Bacillus sp. BT1B_CT2]
gi|404490119|ref|YP_006714225.1| GTP pyrophosphokinase RelA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423683219|ref|ZP_17658058.1| GTP pyrophosphokinase [Bacillus licheniformis WX-02]
gi|52004450|gb|AAU24392.1| GTP pyrophosphokinase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52349121|gb|AAU41755.1| GTP pyrophosphokinase RelA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317392603|gb|EFV73397.1| GTP pyrophosphokinase [Bacillus sp. BT1B_CT2]
gi|383439993|gb|EID47768.1| GTP pyrophosphokinase [Bacillus licheniformis WX-02]
Length = 733
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMAMQNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGIAAH 343
Query: 296 WLYKETGN 303
W YKE N
Sbjct: 344 WAYKEGKN 351
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|427731593|ref|YP_007077830.1| RelA/SpoT family (p)ppGpp synthetase [Nostoc sp. PCC 7524]
gi|427367512|gb|AFY50233.1| (p)ppGpp synthetase, RelA/SpoT family [Nostoc sp. PCC 7524]
Length = 797
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K LYSI+ KM+R+ H++YD ALR++V + CY L IVH
Sbjct: 301 ISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVQGN---------EECYRALAIVHDA 351
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH AE+G+AAHW YKE
Sbjct: 352 FRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTMEMHRIAEYGIAAHWKYKE 411
Query: 301 TGNKLQSISSMDE 313
TG +++ DE
Sbjct: 412 TGGSHSQLTTSDE 424
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
R AQET I+ LA+RLG+W +K ELEDL F L+P+ FR+++ ++ + R
Sbjct: 223 RRSAQETRDIFAPLANRLGIWRIKWELEDLAFKYLEPEAFRQIQQHVSEKRTAR 276
>gi|261345780|ref|ZP_05973424.1| GTP diphosphokinase [Providencia rustigianii DSM 4541]
gi|282566269|gb|EFB71804.1| GTP diphosphokinase [Providencia rustigianii DSM 4541]
Length = 743
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 88/136 (64%), Gaps = 9/136 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ + R K +YSI+ KM++K + ++YD RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEVYGRPKHIYSIWRKMQKKSLAFGELYDVRAVRIVV---------ERLQDCYAALGI 295
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 297 LYKETGNKLQSISSMD 312
YKE + SS +
Sbjct: 356 KYKEGSTGVGKGSSYE 371
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|260363769|ref|ZP_05776538.1| RelA/SpoT domain protein [Vibrio parahaemolyticus K5030]
gi|308111236|gb|EFO48776.1| RelA/SpoT domain protein [Vibrio parahaemolyticus K5030]
Length = 573
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIKDFVEDLSQEMKACGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|256752957|ref|ZP_05493784.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748165|gb|EEU61242.1| (p)ppGpp synthetase I, SpoT/RelA [Thermoanaerobacter ethanolicus
CCSD1]
Length = 493
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIQAEVDGRPKHFYSIYKKMKTQNKTFEQIYDLLAVRIIVN---------TVKDCYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEIQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WKYKE 342
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDQKLSWLRQLLEWQKELKDAKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 552 MRLRSGSTAADAAMKVGLEGKLVL----VNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A + E L VNG++V N +LK+GDIVE+ V
Sbjct: 396 INLPAGSTPIDFAYSIHTEIGHRLNGAKVNGKIVPINYQLKNGDIVEILV 445
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP K + A+ETL I+ +A RLG+ +K ELEDLC L P+ + + +A+ +
Sbjct: 149 LPLDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAA--KRK 206
Query: 69 NRVGYSRRITTIVSS 83
R + + I T +
Sbjct: 207 EREEFIQNIITTIKE 221
>gi|365920616|ref|ZP_09444942.1| putative GTP diphosphokinase [Cardiobacterium valvarum F0432]
gi|364577824|gb|EHM55070.1| putative GTP diphosphokinase [Cardiobacterium valvarum F0432]
Length = 717
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 82/122 (67%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
L R+K + SI+ KM+RK + ++ D RA+RV V + CY +L +V+ L
Sbjct: 230 LYGRVKHINSIYLKMKRKGLRFEQLNDIRAVRVEVETEAD---------CYRVLSVVNDL 280
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI +PK +GYQSLHT++ GP+ +EVQIRT KMHE+AE G+AAHWLYKE
Sbjct: 281 WQPIAAEFDDYIAHPKANGYQSLHTSLIGPENRVIEVQIRTSKMHEHAELGVAAHWLYKE 340
Query: 301 TG 302
G
Sbjct: 341 KG 342
>gi|337750627|ref|YP_004644789.1| RelA protein [Paenibacillus mucilaginosus KNP414]
gi|379723680|ref|YP_005315811.1| RelA protein [Paenibacillus mucilaginosus 3016]
gi|386726431|ref|YP_006192757.1| RelA protein [Paenibacillus mucilaginosus K02]
gi|336301816|gb|AEI44919.1| RelA [Paenibacillus mucilaginosus KNP414]
gi|378572352|gb|AFC32662.1| RelA [Paenibacillus mucilaginosus 3016]
gi|384093556|gb|AFH64992.1| RelA protein [Paenibacillus mucilaginosus K02]
Length = 730
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM + +++YD ALR++V + I+ CY+ L
Sbjct: 227 GIDGDISGRPKHIYSIYKKMTVRSKQFNEIYDLLALRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH +E+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPLEVQIRTFEMHRTSEYGVAAH 337
Query: 296 WLYKETGN 303
W YKE N
Sbjct: 338 WAYKEGTN 345
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIADETLEIFCPIAHRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|442609952|ref|ZP_21024680.1| GTP pyrophosphokinase [Pseudoalteromonas luteoviolacea B = ATCC
29581]
gi|441748544|emb|CCQ10742.1| GTP pyrophosphokinase [Pseudoalteromonas luteoviolacea B = ATCC
29581]
Length = 718
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM +K +++D RA+RVVV + I+ CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMMQKHYEFDQLFDIRAMRVVVKE---------IRDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT+ MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYIATPKQNGYQSIHTVVFGPEGKTVEIQIRTEAMHQDAELGVAAH 344
Query: 296 WLYKE 300
WLYKE
Sbjct: 345 WLYKE 349
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 77
A+ T I+ LA+RLG+ LK ELEDL F L P+ ++ + LA +R Y +
Sbjct: 165 AKATANIFAPLANRLGIGQLKWELEDLSFRYLHPEKYKSIAKQLAD--KRLDREAYMENM 222
Query: 78 TTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
+V++ R A + +H+ S+ K +++ FD L D R
Sbjct: 223 VNLVTTKL---REAGIEAQVYGRPKHIYSIYKKMMQKHYEFDQLFDIR 267
>gi|406917906|gb|EKD56582.1| hypothetical protein ACD_58C00143G0003 [uncultured bacterium]
Length = 502
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 100/166 (60%), Gaps = 17/166 (10%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K LYS++ K++R D I+K+YD ALR+VV +I+ CY +L I+H+
Sbjct: 250 IDGRKKHLYSLWRKLQRYDNNINKIYDMVALRIVV---------ESIEDCYKVLGIIHKT 300
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G DYI PKP+GYQSLHT V GPDG +E+QIRT +MH AE+G+AAHW Y +
Sbjct: 301 WRPLIGRIKDYIAVPKPNGYQSLHTTVFGPDGVIIEIQIRTIQMHYGAEYGIAAHWHYSQ 360
Query: 301 T-GNKLQSISSMDESDIEASSSLS----KDTDDH---NPLDTDLFQ 338
++ QS+ + ++ + L+ K TD + L+ D F+
Sbjct: 361 NKSSQKQSVKYLSNEKLDWLNDLANWQEKQTDKNELLKGLNLDFFK 406
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFR 55
L P K +A+ETL I+ +A RLG+ LK ELE+L F + P+ ++
Sbjct: 165 GLRPDKRLRIAEETLEIYAPIAHRLGMGRLKGELENLSFPYVYPKEYK 212
>gi|258653541|ref|YP_003202697.1| (p)ppGpp synthetase I SpoT/RelA [Nakamurella multipartita DSM
44233]
gi|258556766|gb|ACV79708.1| (p)ppGpp synthetase I, SpoT/RelA [Nakamurella multipartita DSM
44233]
Length = 822
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 154 TSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRV 213
T L A + LE EL + + IPG V R K YSI+ KM+ + +++D A+R+
Sbjct: 306 TYLAAVTQQLEAEL--TAAKIPGQVV---GRGKHYYSIYQKMKARGREFDEIHDLVAVRI 360
Query: 214 VVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 273
+VG +++ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G
Sbjct: 361 LVG---------SVRECYAAMGVVHALWAPMPGRFKDYIAQPRYGVYQSLHTTVIGPEGK 411
Query: 274 ALEVQIRTQKMHEYAEHGLAAHWLYKET-GNKLQSISSMDE 313
LEVQIRT MH AE+G+AAHW YKET G + +++DE
Sbjct: 412 PLEVQIRTFDMHHTAEYGIAAHWRYKETRGTHAGASATVDE 452
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
LPP K A+ETL + LA RLG+ +K ELEDL F++L + +
Sbjct: 245 LPPDKQARKARETLEVLAPLAHRLGMATIKWELEDLAFSILHSKRY 290
>gi|212711298|ref|ZP_03319426.1| hypothetical protein PROVALCAL_02370 [Providencia alcalifaciens DSM
30120]
gi|212686027|gb|EEB45555.1| hypothetical protein PROVALCAL_02370 [Providencia alcalifaciens DSM
30120]
Length = 743
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 9/136 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ + R K +YSI+ KM++K + ++YD RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEVYGRPKHIYSIWRKMQKKSLAFGELYDVRAVRIVV---------ERLQDCYAALGI 295
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 297 LYKETGNKLQSISSMD 312
YKE + + SS +
Sbjct: 356 KYKEGASGVGKGSSYE 371
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|422017125|ref|ZP_16363693.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia
alcalifaciens Dmel2]
gi|414105830|gb|EKT67384.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia
alcalifaciens Dmel2]
Length = 743
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 9/136 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ + R K +YSI+ KM++K + ++YD RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEVYGRPKHIYSIWRKMQKKSLAFGELYDVRAVRIVV---------ERLQDCYAALGI 295
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 297 LYKETGNKLQSISSMD 312
YKE + + SS +
Sbjct: 356 KYKEGASGVGKGSSYE 371
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|375309867|ref|ZP_09775147.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus sp. Aloe-11]
gi|375078231|gb|EHS56459.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus sp. Aloe-11]
Length = 725
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE GN + + D+
Sbjct: 338 WAYKE-GNGANNTNFEDK 354
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A+RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIAYETLEIFCPIANRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|258545036|ref|ZP_05705270.1| GTP diphosphokinase [Cardiobacterium hominis ATCC 15826]
gi|258519734|gb|EEV88593.1| GTP diphosphokinase [Cardiobacterium hominis ATCC 15826]
Length = 716
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 82/122 (67%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
L R+K + SI+ KM+RK + ++ D RA+RV V ++ CY L +V+ L
Sbjct: 229 LYGRVKHINSIYLKMKRKGLRFEQLNDIRAVRVEVENEAD---------CYHTLSVVNEL 279
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI EFDDYI +PK +GYQSLHT++ GP+ +EVQIRT KMHE+AE G+AAHWLYKE
Sbjct: 280 WQPIAEEFDDYIAHPKANGYQSLHTSLIGPENRVIEVQIRTSKMHEHAELGVAAHWLYKE 339
Query: 301 TG 302
G
Sbjct: 340 KG 341
>gi|415885635|ref|ZP_11547563.1| GTP diphosphokinase [Bacillus methanolicus MGA3]
gi|387591304|gb|EIJ83623.1| GTP diphosphokinase [Bacillus methanolicus MGA3]
Length = 731
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I
Sbjct: 234 IKAEISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLGI 284
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW
Sbjct: 285 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHRIAEYGIAAHW 344
Query: 297 LYKETGNKLQSISSMDE 313
YKE G + SS +E
Sbjct: 345 AYKE-GKSVNENSSFEE 360
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPLEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|320155331|ref|YP_004187710.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Vibrio vulnificus
MO6-24/O]
gi|326423852|ref|NP_760472.2| GTP pyrophosphokinase [Vibrio vulnificus CMCP6]
gi|319930643|gb|ADV85507.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Vibrio vulnificus
MO6-24/O]
gi|319999223|gb|AAO09999.2| GTP pyrophosphokinase [Vibrio vulnificus CMCP6]
Length = 741
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEDSELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLS 218
>gi|271501841|ref|YP_003334867.1| (p)ppGpp synthetase I SpoT/RelA [Dickeya dadantii Ech586]
gi|270345396|gb|ACZ78161.1| (p)ppGpp synthetase I, SpoT/RelA [Dickeya dadantii Ech586]
Length = 745
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GLKAEVYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKRI 214
>gi|307719606|ref|YP_003875138.1| GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192]
gi|306533331|gb|ADN02865.1| probable GTP pyrophosphokinase [Spirochaeta thermophila DSM 6192]
Length = 662
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ V + R K LYSI+ KM+RK + ++YD +R++ + CY+LL
Sbjct: 231 GIAVEIQMRRKHLYSIYQKMKRKARPLEEIYDVLGIRLLCNTETE---------CYTLLG 281
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVHRL+ P++G F DYI PK + YQSLHT V P G+ +EVQIRT +MH AE+G+AAH
Sbjct: 282 IVHRLYKPLEGRFKDYIAMPKANRYQSLHTTVMVPGGTLVEVQIRTHQMHRTAEYGIAAH 341
Query: 296 WLYKE 300
WLYKE
Sbjct: 342 WLYKE 346
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
LPPAK +A+A E L I+ LA RLG+ +LK ELEDL LQP+++
Sbjct: 153 LPPAKQKAIATECLEIYAPLAERLGMSSLKDELEDLALKHLQPEVY 198
>gi|308070363|ref|YP_003871968.1| GTP pyrophosphokinase [Paenibacillus polymyxa E681]
gi|305859642|gb|ADM71430.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus polymyxa E681]
Length = 725
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE GN + + D+
Sbjct: 338 WAYKE-GNGANNTNFEDK 354
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A+RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIAYETLEIFCPVANRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|390455260|ref|ZP_10240788.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus peoriae KCTC 3763]
Length = 725
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE GN + + D+
Sbjct: 338 WAYKE-GNGANNTNFEDK 354
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A+RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIAYETLEIFCPIANRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|310643542|ref|YP_003948300.1| GTP pyrophosphokinase [Paenibacillus polymyxa SC2]
gi|309248492|gb|ADO58059.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(PpGpp
synthetase I) ((P)ppGpp synthetase) [Paenibacillus
polymyxa SC2]
gi|392304294|emb|CCI70657.1| GTP pyrophosphokinase [Paenibacillus polymyxa M1]
Length = 725
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 296 WLYKETG 302
W YKE
Sbjct: 338 WAYKENN 344
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A+RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIAYETLEIFCPVANRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|433658640|ref|YP_007276019.1| GTP pyrophosphokinase [Vibrio parahaemolyticus BB22OP]
gi|432509328|gb|AGB10845.1| GTP pyrophosphokinase [Vibrio parahaemolyticus BB22OP]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIKDFVEDLSQEMKACGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|254479350|ref|ZP_05092687.1| RelA/SpoT family protein [Carboxydibrachium pacificum DSM 12653]
gi|214034716|gb|EEB75453.1| RelA/SpoT family protein [Carboxydibrachium pacificum DSM 12653]
Length = 720
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 229 GIPAEVDGRPKHFYSIYKKMKTQNKTFEEIYDLLAIRIIVN---------TVKDCYGVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G EVQIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEVQIRTWEMHKTAEYGIAAH 339
Query: 296 WLYKE 300
W YKE
Sbjct: 340 WRYKE 344
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LPP K + A+ETL I+ +A RLG+ +K ELEDLC L P+ + + +A+ R
Sbjct: 151 LPPDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKER 210
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 347 TTEDEFDKKLVWLRQLLEWQKELKDPKEFMETL---KIDLFTDEV------FVFTPKGDV 397
Query: 552 MRLRSGSTAADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A ++G VNG++V N +LK GDIVE+ V
Sbjct: 398 ISLPAGSTPIDFAYSIHTEIGHRMNGAKVNGRIVPINYQLKTGDIVEILV 447
>gi|295695639|ref|YP_003588877.1| (p)ppGpp synthetase I SpoT/RelA [Kyrpidia tusciae DSM 2912]
gi|295411241|gb|ADG05733.1| (p)ppGpp synthetase I, SpoT/RelA [Kyrpidia tusciae DSM 2912]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 83/127 (65%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YS++ KM ++ ++YD A+RV+V + I+ CY++L
Sbjct: 249 NIKADISGRPKHIYSVYRKMVNQNKQFGEIYDLLAVRVIVDN---------IKDCYAILG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PKP+ YQSLHT V GP G LE+QIRT +MH AE+G+AAH
Sbjct: 300 VVHTLWRPLPGRFKDYIAMPKPNMYQSLHTTVIGPQGEPLEIQIRTWEMHRTAEYGIAAH 359
Query: 296 WLYKETG 302
WLYK+ G
Sbjct: 360 WLYKQGG 366
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+P K +A+ETL I+ LA RLG+ ++ ELEDL L PQ + ++ A+L + R
Sbjct: 171 VPEQKQMRIAKETLEIFAPLAHRLGISRIQWELEDLALRYLNPQQYYRI-ANLMTK-KRR 228
Query: 69 NRVGYSRRI 77
R Y +++
Sbjct: 229 EREAYIQKV 237
>gi|269960398|ref|ZP_06174771.1| GTP pyrophosphokinase [Vibrio harveyi 1DA3]
gi|424047706|ref|ZP_17785264.1| GTP pyrophosphokinase [Vibrio cholerae HENC-03]
gi|269834825|gb|EEZ88911.1| GTP pyrophosphokinase [Vibrio harveyi 1DA3]
gi|408883670|gb|EKM22449.1| GTP pyrophosphokinase [Vibrio cholerae HENC-03]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|363899872|ref|ZP_09326379.1| hypothetical protein HMPREF9625_01039 [Oribacterium sp. ACB1]
gi|395210307|ref|ZP_10399227.1| putative GTP diphosphokinase [Oribacterium sp. ACB8]
gi|361957535|gb|EHL10843.1| hypothetical protein HMPREF9625_01039 [Oribacterium sp. ACB1]
gi|394704597|gb|EJF12135.1| putative GTP diphosphokinase [Oribacterium sp. ACB8]
Length = 755
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R+K +SI+ KM ++ I ++YD A+R++V ++ CY++L
Sbjct: 249 GIEANIKGRIKHFFSIYKKMVNQNKTIDQIYDLFAIRIIV---------ETVRDCYAVLG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H+++ PI G F DYI PKP+ YQSLHT V G DG E+QIRT +MH AE G+AAH
Sbjct: 300 VIHKMYTPIPGRFKDYIAMPKPNMYQSLHTTVIGRDGVPFEIQIRTYEMHRTAEFGIAAH 359
Query: 296 WLYKETG 302
W YKE G
Sbjct: 360 WKYKEQG 366
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 15/76 (19%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
P K + A+E+L I+ LA RLG+ +K E++DL L+P+++ DLA ++
Sbjct: 173 PEKRKEKARESLEIYSPLADRLGISKIKIEMDDLSLKYLEPEVY----YDLA------DK 222
Query: 71 VGYSR-----RITTIV 81
V + R RI +IV
Sbjct: 223 VHFKREAREDRINSIV 238
>gi|28899338|ref|NP_798943.1| GTP pyrophosphokinase [Vibrio parahaemolyticus RIMD 2210633]
gi|260878970|ref|ZP_05891325.1| GTP diphosphokinase [Vibrio parahaemolyticus AN-5034]
gi|417318938|ref|ZP_12105496.1| GTP pyrophosphokinase [Vibrio parahaemolyticus 10329]
gi|28807574|dbj|BAC60827.1| GTP pyrophosphokinase [Vibrio parahaemolyticus RIMD 2210633]
gi|308090436|gb|EFO40131.1| GTP diphosphokinase [Vibrio parahaemolyticus AN-5034]
gi|328474128|gb|EGF44933.1| GTP pyrophosphokinase [Vibrio parahaemolyticus 10329]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIKDFVEDLSQEMKACGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|374325387|ref|YP_005078516.1| GTP pyrophosphokinase [Paenibacillus terrae HPL-003]
gi|357204396|gb|AET62293.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)
[Paenibacillus terrae HPL-003]
Length = 725
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 81/128 (63%), Gaps = 10/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTTKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTVDMHRTAEFGIAAH 337
Query: 296 WLYKETGN 303
W YKE GN
Sbjct: 338 WAYKE-GN 344
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A+RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIAYETLEIFCPIANRLGISAIKWEMEDIALRYLNPQQYYRI 197
>gi|388602705|ref|ZP_10161101.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Vibrio campbellii
DS40M4]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|354586442|ref|ZP_09004929.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus lactis 154]
gi|353180975|gb|EHB46516.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus lactis 154]
Length = 726
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTVKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT +MH AE+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WAYKE 342
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R ++ ETL I+C +A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRISYETLEIFCPIAHRLGISAIKWEMEDIALRYLNPQQYYRI 197
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 540 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
++V V P GE++ L SGS D A ++ E G + VNG++V + +LK GDIVE+
Sbjct: 385 DLVFVFTPKGEVIELPSGSVPLDFAYRIHTEVGNRTIGAKVNGRIVPLDHQLKTGDIVEI 444
>gi|386742397|ref|YP_006215576.1| (p)ppGpp synthetase I [Providencia stuartii MRSN 2154]
gi|384479090|gb|AFH92885.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia stuartii
MRSN 2154]
Length = 745
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 9/137 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 NIQAEIYGRPKHIYSIWRKMKKKSLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKETGNKLQSISSMD 312
W YKE + SS +
Sbjct: 355 WKYKEGATGVGKGSSYE 371
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSR 75
A+E I+ LA+RLG+ LK ELED CF L P+ ++K +AS+ R +R Y
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPEEYKK----IASLLHERRIDREEYID 230
Query: 76 RITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
T + L E ++ +H+ S+ + + + + FD L D R
Sbjct: 231 NFVTTLRKKMLKENIQAE---IYGRPKHIYSIWRKMKKKSLAFDELFDVR 277
>gi|153835470|ref|ZP_01988137.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Vibrio harveyi
HY01]
gi|148867981|gb|EDL67178.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Vibrio harveyi
HY01]
Length = 739
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|444426175|ref|ZP_21221599.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Vibrio campbellii CAIM
519 = NBRC 15631]
gi|444240588|gb|ELU52126.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Vibrio campbellii CAIM
519 = NBRC 15631]
Length = 739
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|392533280|ref|ZP_10280417.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
arctica A 37-1-2]
Length = 718
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM++K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMQQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRT MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTSDMHQDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WMYKE 349
>gi|375266658|ref|YP_005024101.1| GTP pyrophosphokinase [Vibrio sp. EJY3]
gi|369841978|gb|AEX23122.1| GTP pyrophosphokinase [Vibrio sp. EJY3]
Length = 739
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIKDFVEDLTEEMKACGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|358051528|ref|ZP_09145719.1| GTP pyrophosphokinase [Staphylococcus simiae CCM 7213]
gi|357258969|gb|EHJ08835.1| GTP pyrophosphokinase [Staphylococcus simiae CCM 7213]
Length = 729
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 101/174 (58%), Gaps = 21/174 (12%)
Query: 160 EEALEKELLISTSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 217
EE +EK + ++ + M++ ++ R K +YSI+ KM ++ +++D A+RV+V
Sbjct: 215 EEYIEKAIDKISTEMERMQIAGEINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN- 273
Query: 218 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 277
+I CY++L +VH LW P+ G F DYI PK + YQSLHT V GP+G LE+
Sbjct: 274 --------SINDCYAVLGLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEI 325
Query: 278 QIRTQKMHEYAEHGLAAHWLYKETG----------NKLQSISSMDESDIEASSS 321
QIRT MHE AEHG+AAHW YKE NKL + + E+D +S +
Sbjct: 326 QIRTFDMHEIAEHGVAAHWAYKEGKTVNEKDQSYQNKLNWLKELAEADHTSSDA 379
>gi|350532411|ref|ZP_08911352.1| GTP pyrophosphokinase [Vibrio rotiferianus DAT722]
Length = 739
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|219849404|ref|YP_002463837.1| (p)ppGpp synthetase I SpoT/RelA [Chloroflexus aggregans DSM 9485]
gi|219543663|gb|ACL25401.1| (p)ppGpp synthetase I, SpoT/RelA [Chloroflexus aggregans DSM 9485]
Length = 789
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNNE-----VGACYQALG 350
Query: 236 IVHRL--WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR++KMHE AEHG+A
Sbjct: 351 VVHSKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSRKMHEEAEHGIA 410
Query: 294 AHWLYKETGN 303
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
+A PP K + VA+ETL I+ LA RLG+W +K+ELEDL F VL P ++++ LA
Sbjct: 216 HATPPNKQQRVARETLDIYAPLAHRLGMWQMKSELEDLAFKVLHPDRYQEIARGLAMRKE 275
Query: 67 PRNRV 71
R+R+
Sbjct: 276 ARDRI 280
>gi|163802965|ref|ZP_02196852.1| hybrid sensory histidine kinase BarA [Vibrio sp. AND4]
gi|159173255|gb|EDP58083.1| hybrid sensory histidine kinase BarA [Vibrio sp. AND4]
Length = 739
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
>gi|359441597|ref|ZP_09231488.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20429]
gi|358036521|dbj|GAA67737.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20429]
Length = 718
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM++K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMQQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRT MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTSDMHQDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WMYKE 349
>gi|183600075|ref|ZP_02961568.1| hypothetical protein PROSTU_03608 [Providencia stuartii ATCC 25827]
gi|188022361|gb|EDU60401.1| RelA/SpoT family protein [Providencia stuartii ATCC 25827]
Length = 745
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 9/137 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 NIQAEIYGRPKHIYSIWRKMKKKSLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKETGNKLQSISSMD 312
W YKE + SS +
Sbjct: 355 WKYKEGATGVGKGSSYE 371
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR--NRVGYSR 75
A+E I+ LA+RLG+ LK ELED CF L P+ ++K +AS+ R +R Y
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPEEYKK----IASLLHERRIDREEYID 230
Query: 76 RITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
T + L E ++ +H+ S+ + + + + FD L D R
Sbjct: 231 NFVTTLRKKMLKENIQAE---IYGRPKHIYSIWRKMKKKSLAFDELFDVR 277
>gi|424034024|ref|ZP_17773434.1| GTP pyrophosphokinase [Vibrio cholerae HENC-01]
gi|424034962|ref|ZP_17774309.1| GTP pyrophosphokinase [Vibrio cholerae HENC-02]
gi|408873768|gb|EKM12957.1| GTP pyrophosphokinase [Vibrio cholerae HENC-01]
gi|408900898|gb|EKM33821.1| GTP pyrophosphokinase [Vibrio cholerae HENC-02]
Length = 739
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|392540636|ref|ZP_10287773.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
piscicida JCM 20779]
Length = 717
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM +K +++D RA+RVVV + IQ CY+ L
Sbjct: 234 GIKAQVYGRPKHIYSIYKKMAQKSYEFEQLFDIRAMRVVVDE---------IQDCYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT+ MH AE G+AAH
Sbjct: 285 IVHTSWRHLNKEFDDYIATPKQNGYQSIHTVVFGPEGKTVEIQIRTEAMHRDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WMYKE 349
>gi|20807650|ref|NP_622821.1| guanosine polyphosphate pyrophosphohydrolase/synthetase
[Thermoanaerobacter tengcongensis MB4]
gi|20516195|gb|AAM24425.1| Guanosine polyphosphate pyrophosphohydrolases/synthetases
[Thermoanaerobacter tengcongensis MB4]
Length = 718
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K YSI+ KM+ ++ ++YD A+R++V ++ CY +L
Sbjct: 227 GIPAEVDGRPKHFYSIYKKMKTQNKTFEEIYDLLAIRIIVN---------TVKDCYGVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH LW PI G F DYI PKP+ YQSLHT V GP G EVQIRT +MH+ AE+G+AAH
Sbjct: 278 IVHTLWKPIPGRFKDYIAMPKPNMYQSLHTTVIGPKGEPFEVQIRTWEMHKTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WRYKE 342
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LPP K + A+ETL I+ +A RLG+ +K ELEDLC L P+ + + +A+ R
Sbjct: 149 LPPDKQKEKAEETLEIYAPIAHRLGISKIKWELEDLCLRYLHPEEYYDLVEKVAAKRKER 208
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 492 SMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEI 551
+ E + K+ LR +L W+++L+ ++ K + D V V P G++
Sbjct: 345 TTEDEFDKKLVWLRQLLEWQKELKDPKEFMETL---KIDLFTDEV------FVFTPKGDV 395
Query: 552 MRLRSGSTAADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
+ L +GST D A ++G VNG++V N +LK GDIVE+ V
Sbjct: 396 ISLPAGSTPIDFAYSIHTEIGHRMNGAKVNGRIVPINYQLKTGDIVEILV 445
>gi|332532629|ref|ZP_08408505.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037845|gb|EGI74294.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Pseudoalteromonas
haloplanktis ANT/505]
Length = 718
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM++K+ +++D RA+R+VV +Q CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMQQKNYEFDQLFDIRAMRIVV---------ERLQDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRT MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTSDMHQDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WMYKE 349
>gi|403744544|ref|ZP_10953770.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122078|gb|EJY56326.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus hesperidum
URH17-3-68]
Length = 725
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM + +++YD A+RV V +I+ CY +L
Sbjct: 234 NLKAEVSGRAKHIYSIYRKMTTQHKEFNEIYDLFAIRVTV---------ESIKDCYGVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MH+ AE+G+AAH
Sbjct: 285 VVHTMWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEIQIRTWEMHQTAEYGIAAH 344
Query: 296 WLYKETGNK 304
W+YKE+G++
Sbjct: 345 WVYKESGSR 353
>gi|331090638|ref|ZP_08339489.1| hypothetical protein HMPREF9477_00132 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401078|gb|EGG80673.1| hypothetical protein HMPREF9477_00132 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 766
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 17/162 (10%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R+K +SI+ KM +D + ++YD A+R++V +++ CY+ L +H ++ P
Sbjct: 268 RVKHFFSIYKKMVNQDKTVDQIYDLFAIRIIV---------DSVKDCYAALGAIHEMYTP 318
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGN 303
I G F DYI PKP+ YQSLHT + GP G E+QIRT +MH+ AE+G+AAHW YKE+G
Sbjct: 319 IPGRFKDYIAMPKPNMYQSLHTTLMGPAGQPFEIQIRTVEMHKTAEYGIAAHWKYKESGG 378
Query: 304 KLQSISSMDESDIEASSSL---SKDTDDHNPL-----DTDLF 337
+S+++ E + + +DTD+ L D DLF
Sbjct: 379 SEKSVATRAEEKLSWLRQILEWQQDTDNREFLSLLKGDLDLF 420
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
+ P K + A+ET+ I+ +A RLG+ +K EL+DL QP +F
Sbjct: 182 MRPEKQKEKARETMDIYAPIAQRLGISKIKTELDDLALKYSQPDVF 227
>gi|333982309|ref|YP_004511519.1| RelA/SpoT family protein [Methylomonas methanica MC09]
gi|333806350|gb|AEF99019.1| RelA/SpoT family protein [Methylomonas methanica MC09]
Length = 706
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 18/159 (11%)
Query: 144 KVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIH 203
K VQ T L ++ALE+ + + Y R K +YSI+ KMRRK + I
Sbjct: 208 KRVQREACIETFLHDLQQALEEHHIHAKVY---------GRPKHIYSIWCKMRRKQLPIE 258
Query: 204 KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSL 263
++YD A+RV+V D + CY++L + H W I EFDDYI NPK +GYQSL
Sbjct: 259 ELYDLLAVRVIVED---------VTACYTVLGLAHGRWQYIPKEFDDYIANPKENGYQSL 309
Query: 264 HTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
HT V G+ +E+QIRT+ MHE+AE G+AAHW YKE G
Sbjct: 310 HTVVVDKQGNRMEIQIRTRAMHEFAELGVAAHWRYKEGG 348
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
+ +A+ETL I+ LA+RLG+ K ELED+ F L P +R + LA
Sbjct: 159 KFIARETLDIYAPLANRLGISQFKWELEDMAFRYLDPDRYRGIAKSLA 206
>gi|150016418|ref|YP_001308672.1| (p)ppGpp synthetase I SpoT/RelA [Clostridium beijerinckii NCIMB
8052]
gi|149902883|gb|ABR33716.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium beijerinckii NCIMB
8052]
Length = 738
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ KM K+ I +++D A+RV+V +++ CY +L
Sbjct: 229 GIESDIDGRPKHFYSIYKKMVSKNKSIEQIFDLTAIRVLV---------HSVKDCYGVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 296 WLYKETGN 303
W YKE N
Sbjct: 340 WKYKEGDN 347
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
+P K + A+ETL I+ LA RLG+ +K ELEDLCF L + + ++ +A
Sbjct: 151 MPAKKQKNKAKETLDIYAPLAHRLGMSKIKWELEDLCFRYLHEKEYYELVDSIA 204
>gi|282897317|ref|ZP_06305319.1| GTP pyrophosphokinase [Raphidiopsis brookii D9]
gi|281197969|gb|EFA72863.1| GTP pyrophosphokinase [Raphidiopsis brookii D9]
Length = 756
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K LYSI+ KM+R+ H++YD ALR++V + CY L +VH
Sbjct: 254 ISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVETN---------EECYRALAVVHDA 304
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRT +MH+ AE+G+AAHW YKE
Sbjct: 305 FCPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTMEMHQVAEYGIAAHWKYKE 364
Query: 301 TGNKLQSISSMDE 313
TG + DE
Sbjct: 365 TGGSTAQATGTDE 377
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
R AQET I+ LA+RLG+W +K ELEDL F L+P +R+++ +A + R
Sbjct: 176 RRSAQETRDIFAPLANRLGIWHIKWELEDLAFKYLEPDAYREIQEHVAEKRTAR 229
>gi|260899634|ref|ZP_05908029.1| GTP diphosphokinase [Vibrio parahaemolyticus AQ4037]
gi|308110554|gb|EFO48094.1| GTP diphosphokinase [Vibrio parahaemolyticus AQ4037]
Length = 499
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 12/138 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE + S S DE
Sbjct: 354 WKYKEGAS---SRSGYDE 368
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIKDFVEDLSQEMKACGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|255994169|ref|ZP_05427304.1| GTP diphosphokinase [Eubacterium saphenum ATCC 49989]
gi|255993837|gb|EEU03926.1| GTP diphosphokinase [Eubacterium saphenum ATCC 49989]
Length = 733
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E T+ R K YSI+ KM+ + + +++D A+R++V +K+ CY++L
Sbjct: 228 GIEYTIYGRSKHFYSIYKKMQHQKKSLDEIFDLTAIRIIVNEKSD---------CYAVLG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI G F DYI PK + YQS+HT V G G EVQIRT+KMHE AE+G+AAH
Sbjct: 279 VVHNIWTPIPGRFKDYIAMPKMNMYQSIHTTVIGSIGRPFEVQIRTKKMHELAEYGIAAH 338
Query: 296 WLYKE 300
W YKE
Sbjct: 339 WKYKE 343
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
K + QETL I+ LASRLG++++K ELED+ L P+ + +++ ++ + R +
Sbjct: 154 KIKLKCQETLDIYAPLASRLGIYSIKFELEDIALKCLHPETYEELKKNVNEKKTEREK 211
>gi|427717556|ref|YP_007065550.1| (p)ppGpp synthetase I SpoT/RelA [Calothrix sp. PCC 7507]
gi|427349992|gb|AFY32716.1| (p)ppGpp synthetase I, SpoT/RelA [Calothrix sp. PCC 7507]
Length = 756
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 89/141 (63%), Gaps = 12/141 (8%)
Query: 176 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 234
G+E + +S R K LYSI+ KM+R+ H++YD ALR++V + CY L
Sbjct: 249 GIECLDVSGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVRTN---------EECYRAL 299
Query: 235 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 294
+VH + PI G F DYI PKP+ YQSLHT V G G LEVQIRTQ+MH AE+G+AA
Sbjct: 300 AVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTQEMHHIAEYGIAA 359
Query: 295 HWLYKETGNKLQSISSMDESD 315
HW YKETG ++S++ SD
Sbjct: 360 HWKYKETGGS--NVSNLTTSD 378
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+P K R +AQET I+ LA+RLG+W K ELEDL F L+P+ FR+++ +A + R
Sbjct: 171 MPDDKRRRIAQETRDIFAPLANRLGIWHFKWELEDLSFKYLEPESFREIQQHVAEKRTSR 230
>gi|409201635|ref|ZP_11229838.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Pseudoalteromonas
flavipulchra JG1]
Length = 717
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM +K +++D RA+RVVV + IQ CY+ L
Sbjct: 234 GIKAQVYGRPKHIYSIYKKMAQKSYEFEQLFDIRAMRVVVDE---------IQDCYAALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDYI PK +GYQS+HT V GP+G +E+QIRT+ MH AE G+AAH
Sbjct: 285 IVHTSWRHLNKEFDDYIATPKQNGYQSIHTVVFGPEGKTVEIQIRTEAMHRDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WMYKE 349
>gi|156975784|ref|YP_001446691.1| GTP pyrophosphokinase [Vibrio harveyi ATCC BAA-1116]
gi|156527378|gb|ABU72464.1| hypothetical protein VIBHAR_03528 [Vibrio harveyi ATCC BAA-1116]
Length = 739
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+
Sbjct: 241 VCGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVIIGPEGKTIEIQIRTKEMHEDSELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP+ ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLA 218
>gi|374300791|ref|YP_005052430.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio africanus str.
Walvis Bay]
gi|332553727|gb|EGJ50771.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio africanus str.
Walvis Bay]
Length = 716
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K LYSI +KM ++ + + +VYD A RV+V I+ CY++L VH +W
Sbjct: 235 GRTKHLYSIHNKMLQQSLTLDQVYDLMAFRVIVS---------TIRDCYAVLGEVHSIWK 285
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
P+ G F DYI PKP+ YQSLHT V GPDG +E+QIRT++MH AE+G+AAHW YKE G
Sbjct: 286 PVPGRFKDYISMPKPNMYQSLHTTVIGPDGERIEIQIRTEEMHRLAEYGVAAHWQYKEGG 345
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
K + +AQETL I+ LA+RLGL +K ELEDLCF +P + +++
Sbjct: 154 KQKRIAQETLDIYAPLANRLGLHFIKTELEDLCFMYTRPDAYGQLK 199
>gi|311069245|ref|YP_003974168.1| GTP pyrophosphokinase RelA/SpoT [Bacillus atrophaeus 1942]
gi|419820104|ref|ZP_14343718.1| GTP pyrophosphokinase RelA/SpoT [Bacillus atrophaeus C89]
gi|310869762|gb|ADP33237.1| GTP pyrophosphokinase RelA/SpoT [Bacillus atrophaeus 1942]
gi|388475754|gb|EIM12463.1| GTP pyrophosphokinase RelA/SpoT [Bacillus atrophaeus C89]
Length = 734
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
S R K +YSI+ KM ++ +++YD A+R++VG +I+ CY++L I+H
Sbjct: 238 FSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVG---------SIKDCYAVLGIIHTC 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAHWAYKE 348
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|422009743|ref|ZP_16356726.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia rettgeri
Dmel1]
gi|414093561|gb|EKT55233.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia rettgeri
Dmel1]
Length = 743
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 9/137 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 NIQADIYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKETGNKLQSISSMD 312
W YKE + SS +
Sbjct: 355 WKYKEGATGIGKGSSYE 371
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 77
A+E I+ LA+RLG+ LK ELED CF L P ++K +A + R R+ I
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKK----IAKLLHER-RIDREEYI 229
Query: 78 TTIVSS 83
T V++
Sbjct: 230 DTFVTT 235
>gi|198282856|ref|YP_002219177.1| (p)ppGpp synthetase I SpoT/RelA [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198247377|gb|ACH82970.1| (p)ppGpp synthetase I, SpoT/RelA [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 759
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 97/183 (53%), Gaps = 25/183 (13%)
Query: 125 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 184
KR L++ K++ +K V + E ALE LL G +S R
Sbjct: 228 KRWHTLNEAVKAARGNRKEAVQK-----------IEHALEDRLLQE-----GFAAQVSGR 271
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KM++K + ++D A R++V D + CY +L +VH L+ PI
Sbjct: 272 EKHVYSIYRKMQKKGMPFGDIHDLHAFRIIVAD---------VDTCYRVLGLVHSLYRPI 322
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
G F DYI PK +GYQSLHT + GP G +EVQIRT+ MH AE G+AAHWLYK N
Sbjct: 323 PGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEVQIRTEDMHRVAEAGVAAHWLYKTGSNN 382
Query: 305 LQS 307
+
Sbjct: 383 AHA 385
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 52
+ P K R +++ETL I+ +A RLG+ A++ ELE+L F+ L P+
Sbjct: 185 MTPEKRRRISRETLDIYAPIAQRLGIHAIRIELEELAFSHLYPK 228
>gi|218288848|ref|ZP_03493099.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus acidocaldarius
LAA1]
gi|218240937|gb|EED08114.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus acidocaldarius
LAA1]
Length = 725
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM + +++YD A+R++V +I+ CY L
Sbjct: 234 NLKADVSGRAKHIYSIYRKMVTQHKEFNEIYDLFAIRIIV---------ESIKDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MH+ AE+G+AAH
Sbjct: 285 VVHTMWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEIQIRTWEMHQTAEYGIAAH 344
Query: 296 WLYKETGNK 304
W+YKE+G+K
Sbjct: 345 WVYKESGSK 353
>gi|218666350|ref|YP_002425057.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218518563|gb|ACK79149.1| guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 734
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 97/183 (53%), Gaps = 25/183 (13%)
Query: 125 KRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSR 184
KR L++ K++ +K V + E ALE LL G +S R
Sbjct: 203 KRWHTLNEAVKAARGNRKEAVQK-----------IEHALEDRLLQE-----GFAAQVSGR 246
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
K +YSI+ KM++K + ++D A R++V D + CY +L +VH L+ PI
Sbjct: 247 EKHVYSIYRKMQKKGMPFGDIHDLHAFRIIVAD---------VDTCYRVLGLVHSLYRPI 297
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
G F DYI PK +GYQSLHT + GP G +EVQIRT+ MH AE G+AAHWLYK N
Sbjct: 298 PGRFKDYIAIPKSNGYQSLHTVLLGPFGHPVEVQIRTEDMHRVAEAGVAAHWLYKTGSNN 357
Query: 305 LQS 307
+
Sbjct: 358 AHA 360
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ 52
+ P K R +++ETL I+ +A RLG+ A++ ELE+L F+ L P+
Sbjct: 160 MTPEKRRRISRETLDIYAPIAQRLGIHAIRIELEELAFSHLYPK 203
>gi|408356412|ref|YP_006844943.1| GTP pyrophosphokinase [Amphibacillus xylanus NBRC 15112]
gi|407727183|dbj|BAM47181.1| GTP pyrophosphokinase [Amphibacillus xylanus NBRC 15112]
Length = 729
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
S R K +YSI+ KM ++ ++YD A+R++V +I+ CY++L I+H
Sbjct: 237 FSGRPKHIYSIYRKMMLQNKQFDEIYDLLAVRIIVN---------SIKDCYAVLGIIHTC 287
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PKP+ YQSLHT V GP G+ LEVQIRT++MHE AE+G+AAHW YKE
Sbjct: 288 WKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGAPLEVQIRTKEMHEIAEYGIAAHWAYKE 347
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LPP K R +A ETL I+ LA RLG+ A+K ELED+ L PQ + ++
Sbjct: 154 LPPEKQRRIANETLEIFAPLAHRLGISAIKWELEDVALRYLNPQQYYRI 202
>gi|384135926|ref|YP_005518640.1| (p)ppGpp synthetase I SpoT/RelA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290011|gb|AEJ44121.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 725
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM + +++YD A+R++V +I+ CY L
Sbjct: 234 NLKADVSGRAKHIYSIYRKMVTQHKEFNEIYDLFAIRIIV---------ESIKDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MH+ AE+G+AAH
Sbjct: 285 VVHTMWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEIQIRTWEMHQTAEYGIAAH 344
Query: 296 WLYKETGNK 304
W+YKE+G+K
Sbjct: 345 WVYKESGSK 353
>gi|452994812|emb|CCQ93581.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium ultunense Esp]
Length = 721
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 78/123 (63%), Gaps = 10/123 (8%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R KS YSI+ KM ++ +++D A+RV+V I+ CY +L IVH +
Sbjct: 231 ISGRPKSFYSIYKKMVYQNKSFEQIFDLTAIRVIVD---------TIKDCYGVLGIVHTM 281
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI G F DYI PKP+ YQSLHT V GP+G EVQIRT MH AE+G+AAHW YKE
Sbjct: 282 WKPIPGRFKDYIAMPKPNMYQSLHTTVIGPEGEIFEVQIRTWDMHRTAEYGIAAHWKYKE 341
Query: 301 TGN 303
GN
Sbjct: 342 -GN 343
>gi|258512062|ref|YP_003185496.1| (p)ppGpp synthetase I SpoT/RelA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478788|gb|ACV59107.1| (p)ppGpp synthetase I, SpoT/RelA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 725
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM + +++YD A+R++V +I+ CY L
Sbjct: 234 NLKADVSGRAKHIYSIYRKMVTQHKEFNEIYDLFAIRIIV---------ESIKDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MH+ AE+G+AAH
Sbjct: 285 VVHTMWKPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEIQIRTWEMHQTAEYGIAAH 344
Query: 296 WLYKETGNK 304
W+YKE+G+K
Sbjct: 345 WVYKESGSK 353
>gi|260775201|ref|ZP_05884099.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio coralliilyticus
ATCC BAA-450]
gi|260608902|gb|EEX35064.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio coralliilyticus
ATCC BAA-450]
Length = 739
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 85/127 (66%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT+ MHE +E G+AAH
Sbjct: 294 AVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKDMHEDSELGVAAH 353
Query: 296 WLYKETG 302
W YKE G
Sbjct: 354 WKYKEGG 360
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P +A A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRQAAAKECSNIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + IT V + ++ + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYITDFVDDLSNEITSSGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|153839833|ref|ZP_01992500.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase), partial [Vibrio
parahaemolyticus AQ3810]
gi|149746650|gb|EDM57638.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Vibrio
parahaemolyticus AQ3810]
Length = 483
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 12/138 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE + S S DE
Sbjct: 354 WKYKEGAS---SRSGYDE 368
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ LA
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLAE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V + + + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIKDFVEDLSQEMKACGINAEVSGRPKHIYSIWRKMQKKSLAFDELFDVR 276
>gi|283138927|gb|ADB12530.1| putative GTP pyrophosphokinase RelA [uncultured bacterium 9F08]
Length = 736
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K L+SI+ KM+ K + H +YD RA+RV+V ++ CY +L
Sbjct: 250 GVKADIKGRPKHLFSIWKKMKNKGLSFHDLYDVRAVRVLV---------DSVADCYHVLG 300
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI PK + YQS+HTAV GP G LEVQIRT +M ++AE G+AAH
Sbjct: 301 VVHSLWPHIPKEFDDYIATPKENNYQSIHTAVVGPGGKTLEVQIRTWEMDKHAELGVAAH 360
Query: 296 WLYKETG 302
W YKE G
Sbjct: 361 WRYKEGG 367
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A+ET+ I+ LA+RLG+W +K ELEDL F L P ++++
Sbjct: 172 LPEEKQRRIARETMDIYAPLANRLGIWQIKWELEDLSFRYLDPVTYKQV 220
>gi|319942330|ref|ZP_08016645.1| (P)ppGpp synthetase I [Sutterella wadsworthensis 3_1_45B]
gi|319804203|gb|EFW01103.1| (P)ppGpp synthetase I [Sutterella wadsworthensis 3_1_45B]
Length = 745
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 83/128 (64%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM+RK + +++D RA+R++V ++ CY L
Sbjct: 245 GIQAEVSGRPKHIYSIWKKMQRKHLRFDQLFDVRAVRIIV---------ETVEQCYEALS 295
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IV + + E+DDYI NPKP+GYQSLHT + G +E+QIRT+ MHE+AE G+AAH
Sbjct: 296 IVQEHFTVLSKEYDDYIANPKPNGYQSLHTVITDQLGRPIEIQIRTRAMHEFAELGVAAH 355
Query: 296 WLYKETGN 303
W YKE GN
Sbjct: 356 WRYKEAGN 363
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
+ETL ++ LA+RLG+W +K ELEDL P + ++ A+L
Sbjct: 176 GEETLAVYAPLANRLGIWQIKWELEDLSLRFTHPAEYHQIAAEL 219
>gi|332298737|ref|YP_004440659.1| (p)ppGpp synthetase I SpoT/RelA [Treponema brennaborense DSM 12168]
gi|332181840|gb|AEE17528.1| (p)ppGpp synthetase I, SpoT/RelA [Treponema brennaborense DSM
12168]
Length = 615
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 11/143 (7%)
Query: 161 EALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNG 220
E +KE+ + S G+E+ +SSR K YSI+ KMR+++ +++D ALRV+
Sbjct: 228 EKAQKEIYRAASR-AGIEIAVSSRAKHFYSIYQKMRKRNKAADELFDLLALRVICNTSAE 286
Query: 221 TLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIR 280
CY+L+ +VH LW P+DG F DYI PK +GYQSLHT V +G LE+QIR
Sbjct: 287 ---------CYTLVGLVHNLWKPLDGRFKDYIAMPKANGYQSLHTTVLC-EGMPLEIQIR 336
Query: 281 TQKMHEYAEHGLAAHWLYKETGN 303
T+ MH AE+G+A+HWLYK+ N
Sbjct: 337 TKDMHSVAEYGVASHWLYKKGTN 359
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
++ P + +AQE + IW LA+RLG+ ++K+ELEDL P ++ ++++ +A
Sbjct: 163 SVEPDVQKLIAQEVIDIWAPLANRLGMSSVKSELEDLSLKFTNPDVYAQLKSIVA 217
>gi|50122490|ref|YP_051657.1| GDP/GTP pyrophosphokinase [Pectobacterium atrosepticum SCRI1043]
gi|49613016|emb|CAG76467.1| GTP pyrophosphokinase [Pectobacterium atrosepticum SCRI1043]
Length = 745
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHMPDEFDDYVANPKPNGYQSIHTVVLGPSGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|410084923|ref|ZP_11281644.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Morganella morganii
SC01]
gi|409768568|gb|EKN52628.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Morganella morganii
SC01]
Length = 744
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GIQAEIYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPAGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 77
A+E I+ LA+RLG+ LK ELED CF L P +++ +AS+ R R+ I
Sbjct: 175 AKECFNIYAPLANRLGIGQLKWELEDYCFRYLHPDDYKR----IASLLHER-RLDREEYI 229
Query: 78 TTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
V++ D + +H+ S+ + + + + FD L D R
Sbjct: 230 DNFVTTLRNDMKEEGIQAEIYGRPKHIYSIWRKMQKKSLSFDELFDVR 277
>gi|218885891|ref|YP_002435212.1| (p)ppGpp synthetase I SpoT/RelA [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756845|gb|ACL07744.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 722
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 17/165 (10%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R+K YSI+ KM ++D+ + ++D A RV+VGD ++ CY++L ++H
Sbjct: 233 VRGRIKHKYSIYKKMVQQDLTLDDMHDIIAFRVIVGD---------LRDCYAVLGLMHAQ 283
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK +GY+SLHT V GP+G +E+QIRT++MH AEHG+A+HWLYKE
Sbjct: 284 WKPVHGRFKDYISMPKANGYRSLHTTVIGPEGERMEIQIRTEEMHRLAEHGVASHWLYKE 343
Query: 301 TGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 345
S ++ D+E + L + D ++TD + SL++
Sbjct: 344 G-------SRVNPRDLEQFTWLH-EILDRQKMETDSKEFMQSLRL 380
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K + +AQET+ I+ LA+RLGL +K ELEDL F L+P ++ ++
Sbjct: 154 KQKLIAQETMDIYAPLANRLGLHRIKLELEDLSFRYLKPDVYAQI 198
>gi|227114810|ref|ZP_03828466.1| GDP/GTP pyrophosphokinase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 744
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|425737468|ref|ZP_18855741.1| GTP pyrophosphokinase [Staphylococcus massiliensis S46]
gi|425482816|gb|EKU49972.1| GTP pyrophosphokinase [Staphylococcus massiliensis S46]
Length = 729
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM ++ +++D A+RV+V +I+ CY++L +VH L
Sbjct: 238 ISGRPKHIYSIYRKMMKQKKQFEQIFDLLAVRVIVN---------SIKDCYAVLGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTFEMHEIAEHGVAAHWAYKE 348
>gi|332289404|ref|YP_004420256.1| GDP/GTP pyrophosphokinase [Gallibacterium anatis UMN179]
gi|330432300|gb|AEC17359.1| GDP/GTP pyrophosphokinase [Gallibacterium anatis UMN179]
Length = 741
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
EV + R K +YSI+ KM++K++ +YD RA+R++V +Q CY+ L IV
Sbjct: 244 EVEVYGRPKHIYSIWRKMQKKNLAFGDLYDVRAVRIIV---------QKLQDCYAALGIV 294
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H + + EFDDYI NPKP+GYQS+HT V G G +EVQIRTQKMH+ AE G+AAHW
Sbjct: 295 HTHFKHLPKEFDDYIANPKPNGYQSIHTVVLGKGGKPIEVQIRTQKMHDDAELGVAAHWK 354
Query: 298 YKE 300
YKE
Sbjct: 355 YKE 357
>gi|325971908|ref|YP_004248099.1| (p)ppGpp synthetase I SpoT/RelA [Sphaerochaeta globus str. Buddy]
gi|324027146|gb|ADY13905.1| (p)ppGpp synthetase I, SpoT/RelA [Sphaerochaeta globus str. Buddy]
Length = 674
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 10/136 (7%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
++ ++SR K YSI+ KM+++ I +++D +R++ ++ CY++L +V
Sbjct: 231 DIIVTSRAKHTYSIYMKMKKRKKEIDEIFDILGVRILCN---------SVTECYTILGVV 281
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
HRLW PI+G F DYI PK + YQSLHT V DG LE+QIRT++MH AE+G+AAHW
Sbjct: 282 HRLWPPIEGRFKDYIAMPKANNYQSLHTTVMALDGKLLEIQIRTKEMHFTAEYGVAAHWS 341
Query: 298 YK-ETGNKLQSISSMD 312
YK E+G+ S S+MD
Sbjct: 342 YKAESGSDTGSWSTMD 357
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P +AR +A +TL I+ LA RLG+ LK ELEDL +L+P F ++ L S S +
Sbjct: 150 LNPERAREIAGDTLDIFAPLADRLGISWLKDELEDLSLKILKPDTFNYIQEYLLSKKSEQ 209
Query: 69 NRVGYSRRI 77
Y RI
Sbjct: 210 K--AYLSRI 216
>gi|403059832|ref|YP_006648049.1| GTP pyrophosphokinase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807158|gb|AFR04796.1| GTP pyrophosphokinase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 744
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|421492492|ref|ZP_15939852.1| RELA [Morganella morganii subsp. morganii KT]
gi|455738312|ref|YP_007504578.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Morganella morganii
subsp. morganii KT]
gi|400193099|gb|EJO26235.1| RELA [Morganella morganii subsp. morganii KT]
gi|455419875|gb|AGG30205.1| GTP pyrophosphokinase , (p)ppGpp synthetase I [Morganella morganii
subsp. morganii KT]
Length = 744
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GIQAEIYGRPKHIYSIWRKMQKKSLSFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPAGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 77
A+E I+ LA+RLG+ LK ELED CF L P +++ +AS+ R R+ I
Sbjct: 175 AKECFNIYAPLANRLGIGQLKWELEDYCFRYLHPDDYKR----IASLLHER-RLDREEYI 229
Query: 78 TTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
V++ D + +H+ S+ + + + + FD L D R
Sbjct: 230 DNFVTTLRNDMKEEGIQAEIYGRPKHIYSIWRKMQKKSLSFDELFDVR 277
>gi|228475223|ref|ZP_04059949.1| GTP pyrophosphokinase [Staphylococcus hominis SK119]
gi|314936253|ref|ZP_07843600.1| GTP diphosphokinase [Staphylococcus hominis subsp. hominis C80]
gi|418618568|ref|ZP_13181433.1| GTP diphosphokinase [Staphylococcus hominis VCU122]
gi|228270834|gb|EEK12236.1| GTP pyrophosphokinase [Staphylococcus hominis SK119]
gi|313654872|gb|EFS18617.1| GTP diphosphokinase [Staphylococcus hominis subsp. hominis C80]
gi|374827328|gb|EHR91191.1| GTP diphosphokinase [Staphylococcus hominis VCU122]
Length = 729
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 90/151 (59%), Gaps = 19/151 (12%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 238 ISGRPKHIYSIYRKMVKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTFEMHEIAEHGVAAHWAYKE 348
Query: 301 TG----------NKLQSISSMDESDIEASSS 321
NKL + + E+D +S +
Sbjct: 349 GKTINSKTQDFQNKLNWLKELAETDHTSSDA 379
>gi|312143973|ref|YP_003995419.1| (p)ppGpp synthetase I SpoT/RelA [Halanaerobium hydrogeniformans]
gi|311904624|gb|ADQ15065.1| (p)ppGpp synthetase I, SpoT/RelA [Halanaerobium hydrogeniformans]
Length = 715
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%), Gaps = 11/143 (7%)
Query: 158 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 217
+ +EA+EK L T +E + R K L+SI++KM+RK+V ++YD A+RV+V +
Sbjct: 211 SIQEAIEK--LKETLEKHDIESEIYGRPKHLFSIYNKMKRKEVEFDEIYDLTAVRVLVEN 268
Query: 218 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 277
++ CY +L I+H +W P+ G F DYI PK + YQSLHT V P G LEV
Sbjct: 269 ---------VKECYEVLGIIHEIWKPMPGRFKDYIAMPKSNMYQSLHTTVIAPSGDPLEV 319
Query: 278 QIRTQKMHEYAEHGLAAHWLYKE 300
QIRT MH+ AE+G+AAHW YKE
Sbjct: 320 QIRTYDMHKTAEYGIAAHWRYKE 342
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 21 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
TL I+ LA RLG+ LK ELEDLCF L+P ++
Sbjct: 161 TLEIYAPLAHRLGMSKLKWELEDLCFRYLKPDMY 194
>gi|261822785|ref|YP_003260891.1| GDP/GTP pyrophosphokinase [Pectobacterium wasabiae WPP163]
gi|261606798|gb|ACX89284.1| (p)ppGpp synthetase I, SpoT/RelA [Pectobacterium wasabiae WPP163]
gi|385873228|gb|AFI91748.1| (P)ppGpp synthetase I/GTP pyrophosphokinase [Pectobacterium sp.
SCC3193]
Length = 745
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|212555686|gb|ACJ28140.1| GTP pyrophosphokinase [Shewanella piezotolerans WP3]
Length = 735
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWKKMNGKQLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWH 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 HIPREFDDYVANPKPNGYQSIHTIVVGPEGKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
>gi|343503699|ref|ZP_08741508.1| GTP pyrophosphokinase [Vibrio ichthyoenteri ATCC 700023]
gi|342814291|gb|EGU49238.1| GTP pyrophosphokinase [Vibrio ichthyoenteri ATCC 700023]
Length = 740
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLEFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKDMHEDSELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA AQE I+ LA+RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 166 PDEVRRAAAQECTNIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|343514887|ref|ZP_08751952.1| GTP pyrophosphokinase [Vibrio sp. N418]
gi|342799253|gb|EGU34828.1| GTP pyrophosphokinase [Vibrio sp. N418]
Length = 740
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLEFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKDMHEDSELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA AQE I+ LA+RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 166 PDEVRRAAAQECTNIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|418324872|ref|ZP_12936094.1| GTP diphosphokinase [Staphylococcus pettenkoferi VCU012]
gi|365223674|gb|EHM64950.1| GTP diphosphokinase [Staphylococcus pettenkoferi VCU012]
Length = 729
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 10/127 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMVKQKKQFDQIFDLLAIRIIVN---------SINDCYAVLGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 301 TGNKLQS 307
G K+ S
Sbjct: 349 -GKKVNS 354
>gi|359687928|ref|ZP_09257929.1| guanosine polyphosphate pyrophosphohydrolase/synthetase [Leptospira
licerasiae serovar Varillal str. MMD0835]
gi|418750353|ref|ZP_13306639.1| putative GTP diphosphokinase [Leptospira licerasiae str. MMD4847]
gi|418758451|ref|ZP_13314633.1| GTP diphosphokinase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384114353|gb|EIE00616.1| GTP diphosphokinase [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404272956|gb|EJZ40276.1| putative GTP diphosphokinase [Leptospira licerasiae str. MMD4847]
Length = 677
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 11/143 (7%)
Query: 160 EEALEKELLISTSYIPGMEVT--LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGD 217
E+ +EK LI + +++ + R K +SI+ KM+ K+ +++D RA+R+V +
Sbjct: 216 EDYIEKLQLILKQRLAEIQINANVEGRAKHFFSIYRKMKTKEKTFDEIFDLRAIRIVTDE 275
Query: 218 KNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEV 277
I+ CY +L IVH LW P+ G F DYI PK + YQSLHT V GPDG LEV
Sbjct: 276 ---------IKDCYGVLGIVHTLWSPVPGRFKDYIATPKTNMYQSLHTTVIGPDGKPLEV 326
Query: 278 QIRTQKMHEYAEHGLAAHWLYKE 300
QIRT +M+ AE G+AAHW+YKE
Sbjct: 327 QIRTAEMNAIAEFGIAAHWVYKE 349
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
PP K R +A ETL ++ +A RLG++++K+ELEDL F V+ P+ ++ ++ +++ S R
Sbjct: 157 PPEKQRRIANETLSLYAPIAGRLGIYSVKSELEDLAFQVIFPEEYQDIKKRISAKKSER 215
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
V V P GEI++L G+T D A + VGL K +NG+++ TEL+ GD VEV V
Sbjct: 393 VFVFTPKGEIIQLPKGATVLDFAFRIHTDVGLHCKGAKINGRMIPLRTELRSGDQVEVVV 452
>gi|302335523|ref|YP_003800730.1| (p)ppGpp synthetase I SpoT/RelA [Olsenella uli DSM 7084]
gi|301319363|gb|ADK67850.1| (p)ppGpp synthetase I, SpoT/RelA [Olsenella uli DSM 7084]
Length = 781
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 90/148 (60%), Gaps = 18/148 (12%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCC 230
I G ++ R K L+SI+ KM RK +YD A+RV+ VGD C
Sbjct: 248 ITGFQI--HGRPKHLWSIYQKMTRKGKKFTDIYDLIAIRVLTESVGD------------C 293
Query: 231 YSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEH 290
YS L VH +W P+ G F DYI PKP+GYQSLHT V G D +E+QIRT +MH AE+
Sbjct: 294 YSTLGAVHTVWHPLPGRFKDYIAMPKPNGYQSLHTTVIGFDARPIEIQIRTFEMHSQAEY 353
Query: 291 GLAAHWLYKETGNKLQSISSMDESDIEA 318
G+AAHWLYK++GN +S DE+D+++
Sbjct: 354 GIAAHWLYKKSGNSSGRMSR-DEADVDS 380
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
ALPP + A+ET+ ++ LA RLG+ ++K ELEDL F L P + ++
Sbjct: 168 ALPPDRRVFKARETMDVYAPLADRLGISSIKWELEDLAFFYLNPDEYERI 217
>gi|37524902|ref|NP_928246.1| GDP/GTP pyrophosphokinase [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784328|emb|CAE13205.1| GTP pyrophosphokinase [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 743
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 GVTTEIYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGIAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKKI 214
>gi|343508976|ref|ZP_08746273.1| GTP pyrophosphokinase [Vibrio scophthalmi LMG 19158]
gi|342806042|gb|EGU41283.1| GTP pyrophosphokinase [Vibrio scophthalmi LMG 19158]
Length = 740
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLEFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MHE +E G+AAH
Sbjct: 294 IVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKDMHEDSELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA AQE I+ LA+RLG+ LK E+ED F QP+ ++++ L+
Sbjct: 166 PDEVRRAAAQECTNIYAPLANRLGIGQLKWEIEDYAFRYQQPETYKQIAKQLS 218
>gi|221194794|ref|ZP_03567851.1| GTP pyrophosphokinase [Atopobium rimae ATCC 49626]
gi|221185698|gb|EEE18088.1| GTP pyrophosphokinase [Atopobium rimae ATCC 49626]
Length = 791
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 86/141 (60%), Gaps = 16/141 (11%)
Query: 176 GME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVV---VGDKNGTLHGPAIQCCY 231
G+E ++ R K L+SI+ KM RK +YD ALRV+ VGD CY
Sbjct: 252 GLENFQITGRPKHLWSIYQKMVRKGREFSDIYDLIALRVITQSVGD------------CY 299
Query: 232 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHG 291
S+L VH LW P+ G F DYI PK + YQSLHT V G DG +E+QIRT +MHE +E+G
Sbjct: 300 SVLGAVHSLWHPLPGRFKDYIATPKANLYQSLHTTVIGLDGRPIEIQIRTAEMHEASEYG 359
Query: 292 LAAHWLYKETGNKLQSISSMD 312
+AAHWLYK+ GN +SS D
Sbjct: 360 IAAHWLYKKEGNSKGQMSSED 380
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
AL P + A+ET+ ++ LA RLG+ ++K ELEDL F L+P+ ++++
Sbjct: 173 ALAPDRRLFKARETMDVYAPLADRLGISSIKWELEDLSFFWLEPEEYQRI 222
>gi|108804177|ref|YP_644114.1| (p)ppGpp synthetase I SpoT/RelA [Rubrobacter xylanophilus DSM 9941]
gi|108765420|gb|ABG04302.1| (p)ppGpp synthetase I, SpoT/RelA [Rubrobacter xylanophilus DSM
9941]
Length = 742
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 93/153 (60%), Gaps = 15/153 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R+K YSI++KM R++ +++YD LRV+VG +++ CY L
Sbjct: 245 GIEAEVRGRVKHFYSIYNKMVRRNKEFNEIYDLAGLRVIVG---------SVRDCYGALG 295
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PK + YQSLHT V +G LE+QIRT++M AE+G+AAH
Sbjct: 296 VIHSVWKPIPGRFKDYIAMPKFNMYQSLHTTVMSNEGKLLEIQIRTEEMDRTAEYGIAAH 355
Query: 296 WLYKE------TGNKLQSISSMDESDIEASSSL 322
W+YKE ++L + SM E E SS+L
Sbjct: 356 WMYKEGVGENGRADRLAWLKSMMEWQQETSSAL 388
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 63
A ETL I+ LA RLG+++LK ELEDL FA L P+ + +++ +A+
Sbjct: 176 ATETLEIYAPLAHRLGIYSLKWELEDLAFATLHPRRYEEIKRLVAA 221
>gi|427737096|ref|YP_007056640.1| RelA/SpoT family (p)ppGpp synthetase [Rivularia sp. PCC 7116]
gi|427372137|gb|AFY56093.1| (p)ppGpp synthetase, RelA/SpoT family [Rivularia sp. PCC 7116]
Length = 805
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 97/163 (59%), Gaps = 17/163 (10%)
Query: 148 DAGIALTSLVACEEALEKELLISTSYI-------PGME-VTLSSRLKSLYSIFSKMRRKD 199
D+ + LVA + A +E L + + G+E V LS R K LYSI+ KM+R++
Sbjct: 262 DSYRQIQQLVADKRAAREERLTNVTETLRSRLKKAGIECVDLSGRPKHLYSIYQKMQRQN 321
Query: 200 VGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 259
H+++D ALR++V + CY L +VH + PI G F DYI PKP+
Sbjct: 322 KEFHEIFDLAALRIIVKTN---------EECYRALALVHDSFRPIPGRFKDYIGLPKPNR 372
Query: 260 YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
YQSLHT V GP G +EVQIRT +MH AE+G+AAHW+YKE+G
Sbjct: 373 YQSLHTGVIGPWGRPMEVQIRTLEMHRIAEYGIAAHWIYKESG 415
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
A+P K RA A ET I+ LA+RLG+W +K ELEDL F L+ +R+++ +A
Sbjct: 218 AMPEHKRRAKALETREIFAPLANRLGIWHVKWELEDLAFKYLETDSYRQIQQLVAD---- 273
Query: 68 RNRVGYSRRITTIVSS 83
R R+T + +
Sbjct: 274 -KRAAREERLTNVTET 288
>gi|253574925|ref|ZP_04852265.1| RelA/SpoT family protein [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845971|gb|EES73979.1| RelA/SpoT family protein [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 725
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS++ KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVYKKMTMKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT +MH AE+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKANMYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WAYKE 342
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQ-------IFRKMRAD 60
R +A ETL I+C +A+RLG+ A+K E+ED+ L PQ + RK RA+
Sbjct: 155 RRIAYETLEIFCPIANRLGISAIKWEMEDIALRYLNPQQYYRIANLMRKKRAE 207
>gi|421082397|ref|ZP_15543280.1| GDP/GTP pyrophosphokinase [Pectobacterium wasabiae CFBP 3304]
gi|401702634|gb|EJS92874.1| GDP/GTP pyrophosphokinase [Pectobacterium wasabiae CFBP 3304]
Length = 745
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|253689751|ref|YP_003018941.1| (p)ppGpp synthetase I SpoT/RelA [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756329|gb|ACT14405.1| (p)ppGpp synthetase I, SpoT/RelA [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 744
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY L
Sbjct: 244 GVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVV---------ERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 11 PAKARAVA-QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R +A +E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 167 PEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|291326699|ref|ZP_06574051.1| hypothetical protein PROVRETT_07548 [Providencia rettgeri DSM 1131]
gi|291313250|gb|EFE53703.1| GTP diphosphokinase [Providencia rettgeri DSM 1131]
Length = 494
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 185 LKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPI 244
LK +YSI+ KM++K + +++D RA+R+VV +Q CY+ L IVH + +
Sbjct: 4 LKHIYSIWRKMQKKSLAFDELFDVRAVRIVV---------ERLQDCYAALGIVHTHFRHL 54
Query: 245 DGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304
EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW YKE
Sbjct: 55 PDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHWKYKEGATG 114
Query: 305 LQSISSMD 312
+ SS +
Sbjct: 115 IGKGSSYE 122
>gi|386714927|ref|YP_006181250.1| GTP pyrophosphokinase [Halobacillus halophilus DSM 2266]
gi|384074483|emb|CCG45976.1| GTP pyrophosphokinase [Halobacillus halophilus DSM 2266]
Length = 734
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ L+ R K LYSI+ KM ++ +++YD A+R+ V +I+ CY++L
Sbjct: 233 NIDADLNGRPKHLYSIYRKMVLQNKQFNEIYDLLAVRITVN---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTHDMHEIAEYGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPAEKQRRISNETLEIFAPLAHRLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|114562227|ref|YP_749740.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella frigidimarina NCIMB
400]
gi|114333520|gb|ABI70902.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella frigidimarina NCIMB
400]
Length = 756
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 79/118 (66%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ KD+ +++D RA+R+V +Q CY L +VH LW
Sbjct: 271 GRPKHIYSIWRKMKGKDLKFDELFDVRAVRIVT---------ERLQDCYGALGVVHDLWH 321
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT+ MH+ +E G+AAHW YKE
Sbjct: 322 HIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTEAMHQDSELGVAAHWKYKE 379
>gi|365157987|ref|ZP_09354230.1| GTP pyrophosphokinase [Bacillus smithii 7_3_47FAA]
gi|363622166|gb|EHL73337.1| GTP pyrophosphokinase [Bacillus smithii 7_3_47FAA]
Length = 730
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 86/137 (62%), Gaps = 10/137 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E +S R K +YSI+ KM K+ +++YD A+R++V +I+ CY++L I
Sbjct: 234 IEAEISGRPKHIYSIYRKMVIKNKQFNEIYDLLAVRILVN---------SIKDCYAVLGI 284
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MH AE+G+AAHW
Sbjct: 285 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFDMHRIAEYGVAAHW 344
Query: 297 LYKETGNKLQSISSMDE 313
YKE G L SS ++
Sbjct: 345 AYKE-GKTLDENSSFEK 360
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPAEKQRRIANETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|257792451|ref|YP_003183057.1| (p)ppGpp synthetase I SpoT/RelA [Eggerthella lenta DSM 2243]
gi|317490319|ref|ZP_07948805.1| RelA/SpoT family protein [Eggerthella sp. 1_3_56FAA]
gi|325833401|ref|ZP_08165850.1| GTP diphosphokinase [Eggerthella sp. HGA1]
gi|257476348|gb|ACV56668.1| (p)ppGpp synthetase I, SpoT/RelA [Eggerthella lenta DSM 2243]
gi|316910609|gb|EFV32232.1| RelA/SpoT family protein [Eggerthella sp. 1_3_56FAA]
gi|325485325|gb|EGC87794.1| GTP diphosphokinase [Eggerthella sp. HGA1]
Length = 802
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K LYSI+ KM +K G ++YD A+RV+V +++ CYS L
Sbjct: 280 NIQAQIMGRPKHLYSIYQKMTKKGKGFSEIYDLIAVRVIV---------KSVKDCYSALG 330
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT+ MH +E+G+AAH
Sbjct: 331 AVHTLWHPMPGRFKDYIAMPKFNMYQSLHTTVIGPAGRPLEVQIRTEDMHRQSEYGVAAH 390
Query: 296 WLYKETGNK 304
W YKE G K
Sbjct: 391 WRYKEKGGK 399
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRI 77
A+ETL I+ +A RLG+ +K ELEDL F L+P F+++ + S R GY +I
Sbjct: 211 ARETLEIYAPIAHRLGINNIKWELEDLSFYYLEPNKFKQISRMVTESRSERE--GYLDQI 268
Query: 78 TTIV 81
+I+
Sbjct: 269 ISIL 272
>gi|313895497|ref|ZP_07829053.1| GTP diphosphokinase [Selenomonas sp. oral taxon 137 str. F0430]
gi|320528880|ref|ZP_08029972.1| GTP diphosphokinase [Selenomonas artemidis F0399]
gi|402302377|ref|ZP_10821491.1| GTP diphosphokinase [Selenomonas sp. FOBRC9]
gi|312975623|gb|EFR41082.1| GTP diphosphokinase [Selenomonas sp. oral taxon 137 str. F0430]
gi|320138510|gb|EFW30400.1| GTP diphosphokinase [Selenomonas artemidis F0399]
gi|400380596|gb|EJP33410.1| GTP diphosphokinase [Selenomonas sp. FOBRC9]
Length = 742
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ KM+R + + ++YD A+RV+V +++ CY +L
Sbjct: 235 GIEAEIKGRAKHFYSIYRKMKRDNKSVSEIYDLSAVRVLVS---------SVKDCYGVLG 285
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI G F DYI PK +GYQSLHT V G LE+QIRT MH +E G+AAH
Sbjct: 286 VIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVM-TQGDPLEIQIRTHAMHRVSEFGVAAH 344
Query: 296 WLYKETGNKLQSISSMDE--SDIEASSSLSKDTDD 328
W YKE+G + + + D+ S + SL K+ DD
Sbjct: 345 WKYKESGKSIGAGGAADQKMSWLRQMVSLQKEYDD 379
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
K + +A ETL ++ LA+RLG+ +K ELEDLC L+P +
Sbjct: 161 KRQRIAHETLEVYAPLANRLGISNIKIELEDLCLRYLEPDAY 202
>gi|255280796|ref|ZP_05345351.1| GTP diphosphokinase [Bryantella formatexigens DSM 14469]
gi|255268733|gb|EET61938.1| RelA/SpoT family protein [Marvinbryantia formatexigens DSM 14469]
Length = 774
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R+K +SI+ KM +D I ++YD A+R++V ++ CY+ L
Sbjct: 263 GIRAQVDGRVKHFFSIYKKMVNQDKTIDQIYDLFAVRIIV---------DTVKDCYAALG 313
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H ++ PI G F DYI PKP+ YQSLHT + GP+G+ E+QIRT +MH+ AE+G+AAH
Sbjct: 314 VIHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLIGPNGTPFEIQIRTFEMHKTAEYGIAAH 373
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE + + SS +E
Sbjct: 374 WKYKEQSDGKKPDSSREE 391
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+ P K + A+ET+ I+ +A RLG+ +K EL+DL LQP ++ + +A + R
Sbjct: 185 MSPEKQKEKARETMDIYAPIAQRLGISKIKVELDDLSLKYLQPDVYYDLVEKVALRKTER 244
Query: 69 NR 70
+
Sbjct: 245 EK 246
>gi|422023601|ref|ZP_16370105.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia sneebia
DSM 19967]
gi|414092529|gb|EKT54205.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia sneebia
DSM 19967]
Length = 745
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L
Sbjct: 244 NIQAEIYGRPKHIYSIWRKMKKKSLAFGELFDVRAVRIVV---------ERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|411010656|ref|ZP_11386985.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Aeromonas aquariorum
AAK1]
gi|423199768|ref|ZP_17186350.1| RelA/SpoT family protein [Aeromonas hydrophila SSU]
gi|404628846|gb|EKB25617.1| RelA/SpoT family protein [Aeromonas hydrophila SSU]
Length = 737
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM++K + ++++D RA+RVV +Q CY+ L
Sbjct: 240 GVEAEVYGRPKHIYSIWRKMQKKHLEFNELFDVRAVRVVT---------KRLQDCYAALG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 291 IVHTHFHHIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTDQMHQDAELGVAAH 350
Query: 296 WLYKE 300
W YKE
Sbjct: 351 WRYKE 355
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
+AQE I+ LA+RLG+ LK ELEDL F L P ++++ L R R
Sbjct: 170 MAQEITNIYAPLANRLGIGQLKWELEDLAFRYLHPDTYKQIAKQLDEKRLDRER 223
>gi|379012030|ref|YP_005269842.1| GTP pyrophosphokinase RelA [Acetobacterium woodii DSM 1030]
gi|375302819|gb|AFA48953.1| GTP pyrophosphokinase RelA [Acetobacterium woodii DSM 1030]
Length = 723
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G + R K YSI+ KM+ ++ ++YD A+RV+V +++ CY +L
Sbjct: 234 GTHAEIYGRSKHFYSIYRKMKSQNRSFDEIYDLIAVRVIVD---------SLKDCYGVLG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W PI G F DYI PKP+ YQS+HT V GP G E+QIRT++MHE AE+G+AAH
Sbjct: 285 IVHSQWTPIPGRFKDYIAMPKPNLYQSIHTTVMGPKGEPFEIQIRTREMHETAEYGIAAH 344
Query: 296 WLYKE 300
W YKE
Sbjct: 345 WKYKE 349
>gi|218441725|ref|YP_002380054.1| (p)ppGpp synthetase I SpoT/RelA [Cyanothece sp. PCC 7424]
gi|218174453|gb|ACK73186.1| (p)ppGpp synthetase I, SpoT/RelA [Cyanothece sp. PCC 7424]
Length = 749
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 90/149 (60%), Gaps = 10/149 (6%)
Query: 166 ELLISTSYIPGMEV-TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
E L Y G++V + R K LY I+ KM+R+ H++YD ALR++V K
Sbjct: 238 ETLRERLYQIGVKVLEIQGRPKHLYGIYDKMQRQHKEFHEIYDIAALRILVETK------ 291
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
+ CY L IVH ++ PI G F DYI PKP+ YQSLHT V G + LEVQIRT +M
Sbjct: 292 ---EECYRALAIVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVVGLNCRPLEVQIRTLEM 348
Query: 285 HEYAEHGLAAHWLYKETGNKLQSISSMDE 313
H AE+G+AAHW YKETG +I+S DE
Sbjct: 349 HHIAEYGIAAHWKYKETGGSTYNITSEDE 377
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K +A ET I+ LA+RLG+ K ELEDLCF L+P+ +R+++ +A
Sbjct: 170 LAPEKQCRIALETREIFAPLANRLGIGRFKWELEDLCFKYLEPEAYREIQTLVAE----- 224
Query: 69 NRVGYSRRITTIVSSPPLDER 89
RV RI I S L ER
Sbjct: 225 KRVDRETRIDKI--SETLRER 243
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 495 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 554
S + K LR ++ W+ L+ +S K N D V V P G+++ L
Sbjct: 373 TSEDEKFTWLRQLIEWQNDLKDAQEYIESL---KDNLFEDDVY------VFTPQGDVIAL 423
Query: 555 RSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
G+TA D A + VG K +NG+ + +T L +GDIVE+
Sbjct: 424 ARGATAVDFAYRIHTEVGHHMKGARINGRWSVLDTPLHNGDIVEI 468
>gi|92113762|ref|YP_573690.1| (p)ppGpp synthetase I SpoT/RelA [Chromohalobacter salexigens DSM
3043]
gi|91796852|gb|ABE58991.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
[Chromohalobacter salexigens DSM 3043]
Length = 750
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 84/136 (61%), Gaps = 11/136 (8%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K +YSI+ KM+RK + +VYD RA+R++V P + CY+ L IVH
Sbjct: 259 VDGRAKHIYSIWRKMQRKHIDFSQVYDVRAVRILV---------PEVADCYTALGIVHSR 309
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W + EFDDYI NPK +GYQSLHTAV GP+ LE+QIRT MHE AE G+ AHW YK
Sbjct: 310 WHHVPHEFDDYIANPKRNGYQSLHTAVIGPENKVLEIQIRTFSMHEEAELGVCAHWRYK- 368
Query: 301 TGNKLQSISSMDESDI 316
G+ + S S E I
Sbjct: 369 -GHDVDSKSRSYEEKI 383
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P K VA+E I+ LA RLG+ LK ELEDL F LQ ++ + LA R+
Sbjct: 176 PREKRLRVAREVFDIYAPLAHRLGIGQLKWELEDLSFRYLQEDDYKTIAKQLAEKRLDRD 235
Query: 70 R 70
R
Sbjct: 236 R 236
>gi|451819384|ref|YP_007455585.1| GTP pyrophosphokinase RelA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785363|gb|AGF56331.1| GTP pyrophosphokinase RelA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 737
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ KM K+ I +++D A+R++V +++ CY +L
Sbjct: 229 GIESDIDGRPKHFYSIYKKMVNKNKSIEQIFDLTAIRILVN---------SVKDCYGVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 296 WLYKE 300
W YKE
Sbjct: 340 WKYKE 344
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
+P K + A+ETL I+ LA RLG+ +K ELEDLCF L + + ++ +A
Sbjct: 151 MPEKKQKNKAKETLDIYAPLAHRLGMSKIKWELEDLCFRYLHEKEYYELVDSIA 204
>gi|390559275|ref|ZP_10243626.1| GTP pyrophosphokinase [Nitrolancetus hollandicus Lb]
gi|390174152|emb|CCF82919.1| GTP pyrophosphokinase [Nitrolancetus hollandicus Lb]
Length = 721
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K + SI KM RK+ ++YD +RV+V +K CY L
Sbjct: 229 GIGAEISGREKHITSIARKMERKERSFDEIYDVLGIRVIVDEKKD---------CYGALG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H +W PI GEFDDY+ PK S YQS+HT V GP+G LE+QIRT +MH AE+G+AAH
Sbjct: 280 VIHSIWHPIPGEFDDYVATPKESMYQSIHTVVLGPNGHPLEIQIRTHEMHYIAEYGIAAH 339
Query: 296 WLYKE 300
W YKE
Sbjct: 340 WRYKE 344
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
+P AK A+ET+ I+ LA+RLG+W +K+ELEDL + PQ +
Sbjct: 151 MPRAKQLRSAKETMEIYAPLANRLGIWQIKSELEDLALRYVDPQTY 196
>gi|82751232|ref|YP_416973.1| GTP pyrophosphokinase [Staphylococcus aureus RF122]
gi|82656763|emb|CAI81192.1| GTP pyrophosphokinase [Staphylococcus aureus RF122]
Length = 736
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTYDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|37681005|ref|NP_935614.1| GTP pyrophosphokinase [Vibrio vulnificus YJ016]
gi|37199755|dbj|BAC95585.1| GTP pyrophosphokinase [Vibrio vulnificus YJ016]
Length = 741
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 86/125 (68%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K +YSI+ KM++K + +++D RA+R++ DK +Q CY+ L
Sbjct: 243 GINAEVSGRPKHIYSIWRKMQKKSLEFDELFDVRAVRII-ADK--------LQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYKHLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEDSELGVAAH 353
Query: 296 WLYKE 300
W YKE
Sbjct: 354 WKYKE 358
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLS 218
>gi|359433023|ref|ZP_09223368.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20652]
gi|357920332|dbj|GAA59617.1| GTP pyrophosphokinase [Pseudoalteromonas sp. BSi20652]
Length = 718
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM +K+ +++D RA+RVVV +Q CY L
Sbjct: 234 GIEAQVYGRPKHIYSIYKKMAQKNYEFDQLFDIRAMRVVV---------ERLQDCYGALG 284
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH W ++ EFDDY+ PK +GYQS+HT V GP+G +E+QIRT MH+ AE G+AAH
Sbjct: 285 IVHTNWRHLNKEFDDYVATPKQNGYQSIHTVVFGPEGKTVEIQIRTSDMHQDAELGVAAH 344
Query: 296 WLYKE 300
W+YKE
Sbjct: 345 WIYKE 349
>gi|399910414|ref|ZP_10778728.1| GTP pyrophosphokinase [Halomonas sp. KM-1]
Length = 758
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 84/132 (63%), Gaps = 11/132 (8%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
E ++ R K +YSI+ KM+RK + +V D RA+R++V P + CY++L +V
Sbjct: 256 EYEVNGRAKHIYSIWRKMKRKRIDFSQVNDVRAVRILV---------PEVTDCYTVLGLV 306
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H W + EFDDYI NPK +GYQSLHTAV GP+ LE+QIRT MH+ AE G+ AHW
Sbjct: 307 HSRWHHVPNEFDDYIANPKKNGYQSLHTAVLGPENKVLEIQIRTFAMHDEAELGVCAHWR 366
Query: 298 YK--ETGNKLQS 307
YK +TG K S
Sbjct: 367 YKGHDTGGKSSS 378
>gi|117621333|ref|YP_855361.1| GTP pyrophosphokinase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117562740|gb|ABK39688.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((p)ppGpp synthetase) [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 736
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM++K + ++++D RA+RVV +Q CY+ L
Sbjct: 240 GVEAEVYGRPKHIYSIWRKMQKKHLEFNELFDVRAVRVVT---------KRLQDCYAALG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 291 IVHTHFHHIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTDQMHQDAELGVAAH 350
Query: 296 WLYKE 300
W YKE
Sbjct: 351 WRYKE 355
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
+AQE I+ LA+RLG+ LK ELEDL F L P ++++ L R R
Sbjct: 170 MAQEITNIYAPLANRLGIGQLKWELEDLAFRYLHPDTYKQIARQLDEKRLDRER 223
>gi|433463434|ref|ZP_20420988.1| GTP pyrophosphokinase [Halobacillus sp. BAB-2008]
gi|432187529|gb|ELK44809.1| GTP pyrophosphokinase [Halobacillus sp. BAB-2008]
Length = 734
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ L+ R K LYSI+ KM ++ +++YD A+R+ V +I+ CY++L
Sbjct: 233 NIQADLNGRPKHLYSIYRKMVLQNKQFNEIYDLLAVRITV---------ESIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNLYQSLHTTVIGPKGDPLEVQIRTHDMHEIAEYGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPAEKQRRISNETLEIFAPLAHRLGISTIKWELEDTALRYLNPQQYYRI 203
>gi|418635800|ref|ZP_13198160.1| GTP diphosphokinase [Staphylococcus lugdunensis VCU139]
gi|374841502|gb|EHS04973.1| GTP diphosphokinase [Staphylococcus lugdunensis VCU139]
Length = 729
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
>gi|145300353|ref|YP_001143194.1| GTP pyrophosphokinase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|418362268|ref|ZP_12962907.1| GTP pyrophosphokinase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|142853125|gb|ABO91446.1| GTP pyrophosphokinase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356686530|gb|EHI51128.1| GTP pyrophosphokinase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 739
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K +YSI+ KM++K + ++++D RA+RVV +Q CY+ L
Sbjct: 240 GVEAEVYGRPKHIYSIWRKMQKKHLEFNELFDVRAVRVVT---------KRLQDCYAALG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 291 IVHTHFHHIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTDQMHQDAELGVAAH 350
Query: 296 WLYKE 300
W YKE
Sbjct: 351 WRYKE 355
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
+AQE I+ LA+RLG+ LK ELEDL F L P ++++ L R R
Sbjct: 170 MAQEITNIYAPLANRLGIGQLKWELEDLAFRYLHPDTYKQIAKQLDEKRLDRER 223
>gi|315645801|ref|ZP_07898922.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus vortex V453]
gi|315278562|gb|EFU41876.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus vortex V453]
Length = 725
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTVKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT +MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEFGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WAYKE 342
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R ++ ETL I+C +A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRISYETLEIFCPIAHRLGISAIKWEMEDIALRYLNPQQYYRI 197
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 495 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 554
S +NK+ R +L + + + + +S K + D +V V P GE++ L
Sbjct: 349 GSFDNKMTFFREILELQHETKDASEFVESL---KMDFFSD------LVFVFTPKGEVIEL 399
Query: 555 RSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
SGS D A ++ E G + VNG++V + +LK GDIVE+
Sbjct: 400 PSGSVPLDFAYRIHTEVGNRTIGAKVNGRIVPLDYQLKTGDIVEI 444
>gi|302038556|ref|YP_003798878.1| GTP pyrophosphokinase [Candidatus Nitrospira defluvii]
gi|300606620|emb|CBK42953.1| GTP pyrophosphokinase [Candidatus Nitrospira defluvii]
Length = 727
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 97/178 (54%), Gaps = 17/178 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K LY I+ KM ++ + +VYD ALR++ K CY+LL
Sbjct: 233 GLQGEVSGRPKHLYGIYQKMEKQSISFEEVYDLAALRIITDIKMN---------CYALLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H LW P+ G F DYI PK + YQSLHT V GP G +E QIRT++MH +E G+AAH
Sbjct: 284 VIHSLWRPLPGRFKDYIAIPKSNMYQSLHTTVVGPQGEHVEFQIRTEEMHRVSEQGIAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPL-DTDLFQKYSSLKMGHPVIRV 352
W YKE G +DE D + S L + + + L D F L + H V+ V
Sbjct: 344 WKYKEHGR-------IDEKDGKVFSWLRQFVEWNQDLPDNRQFMDSVKLDLFHDVVYV 394
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
L K + +AQETL I+ LA+RLG+ +K ELEDLC L+P ++ +R +A
Sbjct: 155 LSEGKRQQIAQETLEIYAPLANRLGIGWIKNELEDLCLKHLKPDVYESLRVRVA 208
>gi|241889887|ref|ZP_04777185.1| GTP pyrophosphokinase [Gemella haemolysans ATCC 10379]
gi|241863509|gb|EER67893.1| GTP pyrophosphokinase [Gemella haemolysans ATCC 10379]
Length = 725
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 36/193 (18%)
Query: 142 KAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVG 201
+ K ++DA ++TS++A ++ ++ R K +YSI+ KM +++
Sbjct: 214 REKSIKDACSSITSILADN---------------NIKAQVTGRPKHIYSIYKKMVKQNKT 258
Query: 202 IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQ 261
++YD A+RV+V ++ CY+ L +V+ LW+PI G DYI PKP+ YQ
Sbjct: 259 FDQIYDLLAVRVLVD---------SVADCYATLGLVNNLWVPIPGRIKDYIAMPKPNMYQ 309
Query: 262 SLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG------------NKLQSIS 309
SLHT V PDG LEVQIRT +MHE AE G+AAHW YKE N Q I+
Sbjct: 310 SLHTTVIAPDGQTLEVQIRTYEMHEIAEKGIAAHWAYKEGKKVNKNNNFYEKLNWFQKIA 369
Query: 310 SMDESDIEASSSL 322
DE++ A S +
Sbjct: 370 ENDETEATAESFM 382
>gi|339441909|ref|YP_004707914.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[Clostridium sp. SY8519]
gi|338901310|dbj|BAK46812.1| guanosine polyphosphate pyrophosphohydrolase/synthetases
[Clostridium sp. SY8519]
Length = 779
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 9/134 (6%)
Query: 170 STSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQC 229
ST +E T+ R K +SI+ KM +D + ++YD A+R++V D ++
Sbjct: 255 STIAAADIEATVYGRAKHFFSIYKKMVNQDKTLDQIYDLFAIRIIVKD---------VKD 305
Query: 230 CYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAE 289
CY+ L ++H + P+ G F DYI PKP+ YQSLHT + GP+G E+QIRT++MH E
Sbjct: 306 CYAALGVIHEHYTPVPGRFKDYIAMPKPNMYQSLHTTLMGPNGQPFEIQIRTEEMHRTCE 365
Query: 290 HGLAAHWLYKETGN 303
+G+AAHW YKE N
Sbjct: 366 YGIAAHWKYKEANN 379
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
+ P K + A+ET+ I+ +A RLG+ ++K ELEDL L+P+ + + +A
Sbjct: 183 MKPEKQKEKARETMEIYAPIAQRLGISSIKVELEDLSLKYLEPEAYYDLVEKIA 236
>gi|261405422|ref|YP_003241663.1| (p)ppGpp synthetase I SpoT/RelA [Paenibacillus sp. Y412MC10]
gi|329926741|ref|ZP_08281149.1| GTP diphosphokinase [Paenibacillus sp. HGF5]
gi|261281885|gb|ACX63856.1| (p)ppGpp synthetase I, SpoT/RelA [Paenibacillus sp. Y412MC10]
gi|328938941|gb|EGG35309.1| GTP diphosphokinase [Paenibacillus sp. HGF5]
Length = 725
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ LS R K +YS+F KM K+ +++YD A+R++V + I+ CY+ L
Sbjct: 227 GIQADLSGRPKHIYSVFKKMTVKNKQFNEIYDLLAIRIIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G EVQIRT +MH AE G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVVGPNGEPTEVQIRTWEMHRTAEFGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WAYKE 342
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R ++ ETL I+C +A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRISYETLEIFCPIAHRLGISAIKWEMEDIALRYLNPQQYYRI 197
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 495 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 554
S +NK+ R +L + + + + +S K + D +V V P GE++ L
Sbjct: 349 GSFDNKMTFFREILELQHETKDASEFVESL---KMDFFSD------LVFVFTPKGEVIEL 399
Query: 555 RSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
SGS D A ++ E G + VNG++V + +LK GDIVE+
Sbjct: 400 PSGSVPLDFAYRIHTEVGNRTIGAKVNGRIVPLDHQLKTGDIVEI 444
>gi|289550601|ref|YP_003471505.1| GTP pyrophosphokinase [Staphylococcus lugdunensis HKU09-01]
gi|385784229|ref|YP_005760402.1| GTP pyrophosphokinase [Staphylococcus lugdunensis N920143]
gi|418413905|ref|ZP_12987121.1| GTP pyrophosphokinase [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289180133|gb|ADC87378.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Staphylococcus
lugdunensis HKU09-01]
gi|339894485|emb|CCB53764.1| GTP pyrophosphokinase [Staphylococcus lugdunensis N920143]
gi|410877543|gb|EKS25435.1| GTP pyrophosphokinase [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 729
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
>gi|284044641|ref|YP_003394981.1| (p)ppGpp synthetase I SpoT/RelA [Conexibacter woesei DSM 14684]
gi|283948862|gb|ADB51606.1| (p)ppGpp synthetase I, SpoT/RelA [Conexibacter woesei DSM 14684]
Length = 714
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K YSI+SKM RK +++YD A+RV+V +++ CY +
Sbjct: 213 GIHAEISGRAKHFYSIYSKMTRKGREFNEIYDLTAMRVIVD---------SVKDCYGAVG 263
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H LW P+ G F D++ PK + YQSLHT V GP+G LE+QIRT++MH+ AE G+AAH
Sbjct: 264 VIHSLWKPLPGRFKDFVAMPKFNMYQSLHTTVIGPEGRPLEIQIRTREMHDMAEFGIAAH 323
Query: 296 WLYKE 300
W+YK+
Sbjct: 324 WIYKQ 328
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
A+P K A+ETL I+ +A RLG+ A+K ELEDL FA L P+ + +++ + +
Sbjct: 134 AMPKQKQIEKAKETLDIYAPIAHRLGIHAIKWELEDLAFATLHPRKYTEIKGLVNQQRTE 193
Query: 68 RNR 70
R R
Sbjct: 194 RER 196
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 28/141 (19%)
Query: 472 EGKPVDSVVSRRSSDSVA-------------PTSMEASINNKVRLLRTMLRWEEQLRSEA 518
EG+P++ + R +A PTS E + K++ LR +L W++++
Sbjct: 299 EGRPLEIQIRTREMHDMAEFGIAAHWIYKQDPTSSEG--DGKLKWLRRLLDWQQEMSDPK 356
Query: 519 SLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLV 574
+ K + D V V P GE+ L +G+T D A +V G
Sbjct: 357 EFMDTL---KVDLFEDEV------FVFTPKGEVKSLAAGATPLDFAYEVHTDVGHRTVGA 407
Query: 575 LVNGQLVLPNTELKDGDIVEV 595
VNG++V + EL+ GDIVEV
Sbjct: 408 KVNGKMVPLSYELRSGDIVEV 428
>gi|387929855|ref|ZP_10132532.1| GTP pyrophosphokinase RelA/SpoT [Bacillus methanolicus PB1]
gi|387586673|gb|EIJ78997.1| GTP pyrophosphokinase RelA/SpoT [Bacillus methanolicus PB1]
Length = 731
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 10/137 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I
Sbjct: 234 IKAEISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLGI 284
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE+G+AAHW
Sbjct: 285 IHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHRIAEYGIAAHW 344
Query: 297 LYKETGNKLQSISSMDE 313
YKE G ++ SS ++
Sbjct: 345 AYKE-GKSVKENSSFED 360
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPLEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|171058582|ref|YP_001790931.1| (p)ppGpp synthetase I SpoT/RelA [Leptothrix cholodnii SP-6]
gi|170776027|gb|ACB34166.1| (p)ppGpp synthetase I, SpoT/RelA [Leptothrix cholodnii SP-6]
Length = 758
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM+ K + +V+D ALRV+V D ++ CY+ L
Sbjct: 254 GVQAQVQGRPKHIYSIWKKMQGKSLDFSRVFDVSALRVIVAD---------VRDCYAALS 304
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW + EFDDYI PK +GYQSLHT V + E+QIRT++MHE+AE G+AAH
Sbjct: 305 RVHELWHALPDEFDDYIARPKANGYQSLHTVVLDDEQRPFEIQIRTREMHEHAESGVAAH 364
Query: 296 WLYKETGNK 304
W YKE G+K
Sbjct: 365 WAYKEAGSK 373
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
RA+A+E+ ++ LA+RLG+W +K ELEDL F LQP+ ++++
Sbjct: 182 RALARESQQVFAPLANRLGIWQIKWELEDLAFRFLQPEQYKRI 224
>gi|302342677|ref|YP_003807206.1| (p)ppGpp synthetase I SpoT/RelA [Desulfarculus baarsii DSM 2075]
gi|301639290|gb|ADK84612.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfarculus baarsii DSM 2075]
Length = 726
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K SI+ KM+R++V I ++YD A RV+VG +I+ CY L
Sbjct: 233 GISCSVYGRPKHFASIYGKMQRRNVDISELYDLLAFRVLVG---------SIKDCYEALG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ G F DYI PK + YQSLHTAV GP G +EVQIRT++MH AE G+AAH
Sbjct: 284 VVHTIWKPVPGRFRDYIGMPKANMYQSLHTAVVGPMGQRMEVQIRTEEMHRIAEEGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WRYKE 348
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +AQET I+ +A RLG+ + ELEDL F L P+I+++++ ++A + R
Sbjct: 155 LKPEKQRRIAQETRDIYAPMAHRLGIRRWQIELEDLAFYYLDPEIYQRIKEEVAQSQAER 214
Query: 69 N 69
N
Sbjct: 215 N 215
>gi|452975303|gb|EME75122.1| GTP pyrophosphokinase RelA [Bacillus sonorensis L12]
Length = 733
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMAMQNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|427706762|ref|YP_007049139.1| (p)ppGpp synthetase I SpoT/RelA [Nostoc sp. PCC 7107]
gi|427359267|gb|AFY41989.1| (p)ppGpp synthetase I, SpoT/RelA [Nostoc sp. PCC 7107]
Length = 756
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 12/160 (7%)
Query: 157 VACEEALEKELLISTSYIPGMEV---TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRV 213
A EE L K I +P + +S R K LYSI+ KM+R+ H++YD ALR+
Sbjct: 227 TAREEKLAKATEILRERLPHAGIHCLDISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRI 286
Query: 214 VVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGS 273
+V + CY L +VH + PI G F DYI PKP+ YQSLHT V G G
Sbjct: 287 IVQTN---------EECYRALAVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGR 337
Query: 274 ALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDE 313
LE+QIRT +MH AE+G+AAHW YKETG ++ DE
Sbjct: 338 PLEIQIRTLEMHHIAEYGIAAHWKYKETGGSNSQFTASDE 377
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
R AQET I+ LA+RLG+W +K ELEDL F L+P+ FR+M+ ++ + R
Sbjct: 176 RRSAQETRDIFAPLANRLGIWHIKWELEDLAFKYLEPEAFRQMQQHVSEKRTAR 229
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 498 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSG 557
+ K LR +L W+ L+ S K N D V V P G+++ L G
Sbjct: 376 DEKFTWLRQLLEWQSDLKDAQEYLDSV---KDNLFEDDVY------VFTPKGDVVSLNPG 426
Query: 558 STAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
ST+ D A + VG VNG++V +T L +GDIVE+
Sbjct: 427 STSIDFAYRIHTEVGNHCSGSKVNGRIVPLSTRLHNGDIVEI 468
>gi|374709317|ref|ZP_09713751.1| (p)ppGpp synthetase I SpoT/RelA [Sporolactobacillus inulinus CASD]
Length = 724
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 91/142 (64%), Gaps = 14/142 (9%)
Query: 169 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 228
+ + +IP +S R K +YSI+ KM + +++YD A+R++V I+
Sbjct: 223 VKSVHIPA---EVSGRPKHIYSIYRKMVNQHKQFNEIYDLFAVRIIV---------KTIK 270
Query: 229 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 288
CY++L I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT++MH+ A
Sbjct: 271 DCYAILGIIHTHWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTEEMHDVA 330
Query: 289 EHGLAAHWLYKETGNKLQSISS 310
E+G+AAHW YKE K+++I++
Sbjct: 331 EYGIAAHWAYKE--GKVKNINN 350
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A ETL I+ LA+RLG+ A+K ELED+ L+PQ + K+
Sbjct: 158 ANETLEIYAPLANRLGISAIKWELEDISLRYLKPQQYYKI 197
>gi|315658096|ref|ZP_07910968.1| GTP diphosphokinase [Staphylococcus lugdunensis M23590]
gi|315496425|gb|EFU84748.1| GTP diphosphokinase [Staphylococcus lugdunensis M23590]
Length = 758
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 267 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 317
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 318 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 377
Query: 301 TG----------NKLQSISSMDESD 315
NKL + + E+D
Sbjct: 378 GKTVDEKTQDFQNKLNWLKELAEAD 402
>gi|379795989|ref|YP_005325987.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872979|emb|CCE59318.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 736
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVNEKDQNYQNKLNWLKELAEADHTSSDA 386
>gi|357403760|ref|YP_004915684.1| GTP pyrophosphokinase [Methylomicrobium alcaliphilum 20Z]
gi|351716425|emb|CCE22085.1| GTP pyrophosphokinase [Methylomicrobium alcaliphilum 20Z]
Length = 706
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI++KMRRK + I +YD A+RV+V ++ CYS+L
Sbjct: 227 GITAKVYGRPKHIYSIWNKMRRKQLAIDDLYDLLAVRVIVD---------SLTACYSVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+ H W I EFDDYI NPK +GYQSLHT + G+ +E+QIRT+ MHE+AE G+AAH
Sbjct: 278 LAHSYWKYIPKEFDDYIANPKENGYQSLHTVIVDHKGNRIEIQIRTRSMHEFAELGVAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WRYKE 342
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P R +AQETL ++ LA+RLG+ K ELEDL F L+P ++++ LA
Sbjct: 151 PGVRRFIAQETLDVYAPLANRLGVSQFKWELEDLAFRYLEPDNYKRIAESLA 202
>gi|260771268|ref|ZP_05880195.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio furnissii CIP
102972]
gi|260613865|gb|EEX39057.1| GTP pyrophosphokinase (p)ppGpp synthetase I [Vibrio furnissii CIP
102972]
Length = 741
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ + +S R K +YSI+ KM++K++ +++D RA+R++ DK +Q CY+
Sbjct: 241 VSSINAEVSGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYRHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDEVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V+ + +S + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIRDFVNDLRNEMSVSSINAEVSGRPKHIYSIWRKMQKKNLAFDELFDVR 276
>gi|335046678|ref|ZP_08539701.1| GTP diphosphokinase [Oribacterium sp. oral taxon 108 str. F0425]
gi|363896423|ref|ZP_09322974.1| hypothetical protein HMPREF9624_01718 [Oribacterium sp. ACB7]
gi|333760464|gb|EGL38021.1| GTP diphosphokinase [Oribacterium sp. oral taxon 108 str. F0425]
gi|361960709|gb|EHL13942.1| hypothetical protein HMPREF9624_01718 [Oribacterium sp. ACB7]
Length = 755
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R+K +SI+ KM ++ I ++YD A+R++V +++ CY++L
Sbjct: 249 GIEANIKGRIKHFFSIYKKMVNQNKTIDQIYDLFAIRIIV---------ESVRDCYAVLG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H+++ PI G F DYI PKP+ YQSLHT V G DG E+QIRT +MH AE G+AAH
Sbjct: 300 VIHKMYRPIPGRFKDYIAMPKPNMYQSLHTTVIGRDGVPFEIQIRTFEMHRTAEFGIAAH 359
Query: 296 WLYKETG 302
W YKE G
Sbjct: 360 WKYKEQG 366
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
P K + A+E+L I+ LA RLG+ +K E++DL L+P+++
Sbjct: 173 PEKRKEKARESLEIYSPLADRLGISKIKIEMDDLSLKYLEPEVY 216
>gi|312881711|ref|ZP_07741488.1| GTP pyrophosphokinase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370601|gb|EFP98076.1| GTP pyrophosphokinase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 739
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 83/122 (68%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KMR+K + +++D RA+R++ DK +Q CY+ L VH
Sbjct: 248 VSGRPKHIYSIWRKMRKKGLAFDELFDVRAVRII-ADK--------LQDCYAALGAVHTK 298
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT+ MHE +E G+AAHW YKE
Sbjct: 299 YKHLPNEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKDMHEDSELGVAAHWKYKE 358
Query: 301 TG 302
G
Sbjct: 359 GG 360
>gi|375129952|ref|YP_004992051.1| GTP pyrophosphokinase [Vibrio furnissii NCTC 11218]
gi|315179125|gb|ADT86039.1| GTP pyrophosphokinase [Vibrio furnissii NCTC 11218]
Length = 741
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 87/127 (68%), Gaps = 9/127 (7%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
+ + +S R K +YSI+ KM++K++ +++D RA+R++ DK +Q CY+
Sbjct: 241 VSSINAEVSGRPKHIYSIWRKMQKKNLAFDELFDVRAVRII-ADK--------LQDCYAA 291
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +E G+A
Sbjct: 292 LGVVHTKYRHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEESELGVA 351
Query: 294 AHWLYKE 300
AHW YKE
Sbjct: 352 AHWKYKE 358
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P RA A+E I+ LA+RLG+ LK E+ED F QP ++++ L+
Sbjct: 166 PDDVRRAAAKECANIYAPLANRLGIGQLKWEIEDYAFRYQQPDTYKQIAKQLSE-----R 220
Query: 70 RVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM-KDLLEAVVPFDILSDRR 124
R+ + I V+ + +S + + +H+ S+ + + + + FD L D R
Sbjct: 221 RIVREQYIRDFVNDLRNEMSVSSINAEVSGRPKHIYSIWRKMQKKNLAFDELFDVR 276
>gi|223044113|ref|ZP_03614152.1| RelA/SpoT family protein [Staphylococcus capitis SK14]
gi|417907908|ref|ZP_12551675.1| GTP diphosphokinase [Staphylococcus capitis VCU116]
gi|222442507|gb|EEE48613.1| RelA/SpoT family protein [Staphylococcus capitis SK14]
gi|341594995|gb|EGS37673.1| GTP diphosphokinase [Staphylococcus capitis VCU116]
Length = 729
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRIIVN---------SINDCYAILGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 301 TG----------NKLQSISSMDESD 315
NKL + + E+D
Sbjct: 349 GKTVNEKTQDFQNKLNWLKELAETD 373
>gi|422013210|ref|ZP_16359838.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia
burhodogranariea DSM 19968]
gi|414103418|gb|EKT64993.1| (p)ppGpp synthetase I/GTP pyrophosphokinase [Providencia
burhodogranariea DSM 19968]
Length = 745
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ + R K +YSI+ KM++K + +++D RA+R+VV +Q CY+ L I
Sbjct: 245 IQAEIYGRPKHIYSIWRKMKKKALAFDELFDVRAVRIVV---------ERLQDCYAALGI 295
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH + + EFDDY+ NPKP+GYQS+HT V GP+G LE+QIRT++MHE AE G+AAHW
Sbjct: 296 VHTHFRHLPDEFDDYVANPKPNGYQSIHTVVLGPNGKTLEIQIRTRQMHEDAELGVAAHW 355
Query: 297 LYKE 300
YKE
Sbjct: 356 KYKE 359
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++K+
Sbjct: 175 AKECSNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKI 214
>gi|406920704|gb|EKD58719.1| hypothetical protein ACD_56C00061G0001 [uncultured bacterium]
Length = 498
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 85/130 (65%), Gaps = 10/130 (7%)
Query: 176 GMEV-TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 234
G++V + R KS+YS++ K+++ D+ I++VYD A+R++V + + CY L
Sbjct: 231 GIDVLEIHGRAKSVYSLYLKLQKHDMDINRVYDLAAVRIIVNE---------VADCYETL 281
Query: 235 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 294
+VH+ + P+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AA
Sbjct: 282 GVVHKKYRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTLKMHNEAEFGIAA 341
Query: 295 HWLYKETGNK 304
HWLY E K
Sbjct: 342 HWLYSEGKKK 351
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
PP K +A+ET+ ++ +A+RLG+ +K +L+DL F L P ++ ++
Sbjct: 154 PPEKQLRIARETMEVFAPIANRLGMGEIKTQLQDLSFQYLDPTNYQAVK 202
>gi|314933798|ref|ZP_07841163.1| GTP diphosphokinase [Staphylococcus caprae C87]
gi|313653948|gb|EFS17705.1| GTP diphosphokinase [Staphylococcus caprae C87]
Length = 734
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 87/145 (60%), Gaps = 19/145 (13%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V +I CY++L +VH L
Sbjct: 243 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRIIVN---------SINDCYAILGLVHTL 293
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 294 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 353
Query: 301 TG----------NKLQSISSMDESD 315
NKL + + E+D
Sbjct: 354 GKTVNEKTQDFQNKLNWLKELAETD 378
>gi|94265180|ref|ZP_01288942.1| RelA/SpoT protein [delta proteobacterium MLMS-1]
gi|93454321|gb|EAT04628.1| RelA/SpoT protein [delta proteobacterium MLMS-1]
Length = 723
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 79/118 (66%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K LYSI K+ +++ + KVYD A R++VGD I+ CY+ L I+H LW
Sbjct: 241 GRPKHLYSIHKKLLVQNITLDKVYDKVAFRIIVGD---------IKECYTALGIIHSLWA 291
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
PIDG F D+I +PK +GY+S+HT+V GPDG +E+QIRT++M A G+AAHW YKE
Sbjct: 292 PIDGRFKDFISHPKANGYRSVHTSVIGPDGDFMEIQIRTEEMDRIASEGIAAHWAYKE 349
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+AQET+ ++ LASRLG+ +K ELEDL FA LQP ++++ A + + S +R Y R
Sbjct: 163 IAQETMDLYAPLASRLGIDWIKRELEDLAFAQLQPGAYQQLTAKIQT--SLPDREAYVER 220
Query: 77 ITTIVS 82
I ++S
Sbjct: 221 IKELLS 226
>gi|406886013|gb|EKD33114.1| hypothetical protein ACD_76C00094G0045 [uncultured bacterium]
Length = 496
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 13/162 (8%)
Query: 180 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHR 239
++ RLK L+S++ K+ R + I+KV+D A+RV+V D + CY+ L I+H+
Sbjct: 233 SVHGRLKHLFSLYKKLLRFERDINKVHDLIAVRVIVND---------VADCYAALGILHQ 283
Query: 240 LWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
LW P+ G DYI PKP+GYQSLHT V +G +E QIRT +MHE AE+G+A+HW YK
Sbjct: 284 LWRPLAGRIKDYIAQPKPNGYQSLHTTVFADNGQIVEFQIRTPQMHERAEYGIASHWQYK 343
Query: 300 ETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDT---DLFQ 338
E K + I+ ++E + LS D LD D+FQ
Sbjct: 344 EADKKTKQIAWVEEL-AKIQKELSATPDFMTRLDEMKLDMFQ 384
>gi|417645315|ref|ZP_12295229.1| GTP diphosphokinase [Staphylococcus warneri VCU121]
gi|445059472|ref|YP_007384876.1| GTP pyrophosphokinase [Staphylococcus warneri SG1]
gi|330683916|gb|EGG95684.1| GTP diphosphokinase [Staphylococcus epidermidis VCU121]
gi|443425529|gb|AGC90432.1| GTP pyrophosphokinase [Staphylococcus warneri SG1]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 19/151 (12%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRIIVN---------TINDCYAILGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 301 TG----------NKLQSISSMDESDIEASSS 321
NKL + + E+D +S +
Sbjct: 349 GKTVNEKTQDFQNKLNWLKDLAETDHTSSDA 379
>gi|298529911|ref|ZP_07017313.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509285|gb|EFI33189.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfonatronospira thiodismutans
ASO3-1]
Length = 720
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 22/156 (14%)
Query: 160 EEALEKELLISTSYIP-------------GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVY 206
+E + K+ ++ YI +E +S R+K +YSI+ KM ++ + + +V+
Sbjct: 199 QEGVNKQKVVGEQYIQKVCQNIEEILEQNSIEGRVSGRMKHIYSIYHKMVQQGLSLDQVF 258
Query: 207 DARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTA 266
D A RV+V +I+ CY++L +VH +W P+ G F DYI PK + YQSLHT
Sbjct: 259 DIIAFRVLV---------QSIKDCYAVLGLVHSIWKPVPGRFKDYISMPKANMYQSLHTT 309
Query: 267 VQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
V GPDG +E+QIRT++MH+ AE G+A+HW YKE G
Sbjct: 310 VIGPDGERIEIQIRTEEMHKMAEFGVASHWRYKEDG 345
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
K +AVAQET+ I+ LA+RLGL+ LK +LEDL ++P ++ +++
Sbjct: 154 KQKAVAQETMDIYAPLANRLGLYRLKIQLEDLSLRYMKPDVYFQIQ 199
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 504 LRTMLRWEEQLRSE----ASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
LR +L W+E+L+ ASLR + V V P GE+ L G+T
Sbjct: 360 LRQILDWQEELKDPREFMASLRFDLFEDE-------------VYVFTPRGEVKELPEGAT 406
Query: 560 AADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
D A +VG VNG+LV NT LK+GD VE+
Sbjct: 407 PIDFAYMIHTEVGDRCAGAKVNGKLVPLNTVLKNGDTVEI 446
>gi|427428065|ref|ZP_18918107.1| GTP pyrophosphokinase [Caenispirillum salinarum AK4]
gi|425882766|gb|EKV31445.1| GTP pyrophosphokinase [Caenispirillum salinarum AK4]
Length = 725
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+EV LS R KS +SI+ KM+ KDV ++ D A RV+V P+++ CY L
Sbjct: 229 GVEVELSGREKSPFSIYKKMQMKDVAFEQLSDIMAFRVIV---------PSVEDCYRALG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H + + G F DYI PKP+GYQSLHT + GP+ +EVQIRT+ MHE AE G+AAH
Sbjct: 280 VIHGAYPMVPGRFKDYISTPKPNGYQSLHTGIIGPEKHRIEVQIRTKAMHEIAELGVAAH 339
Query: 296 WLYKE 300
W YK+
Sbjct: 340 WSYKQ 344
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP 51
P K + +A ET+ I+ LA R+G+ A K ELED FA L P
Sbjct: 153 PEKRQRIAAETMEIYAPLAERIGMDAWKMELEDRAFAELHP 193
>gi|339010669|ref|ZP_08643239.1| GTP pyrophosphokinase [Brevibacillus laterosporus LMG 15441]
gi|421875402|ref|ZP_16306994.1| GTP pyrophosphokinase [Brevibacillus laterosporus GI-9]
gi|338772824|gb|EGP32357.1| GTP pyrophosphokinase [Brevibacillus laterosporus LMG 15441]
gi|372455610|emb|CCF16543.1| GTP pyrophosphokinase [Brevibacillus laterosporus GI-9]
Length = 727
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E ++ R K +YSI+ KM ++ +++YD ALR++V D I+ CY++L I
Sbjct: 230 IEAEIAGRPKHIYSIYKKMVSQNKQFNEIYDLLALRIIVND---------IRDCYAVLGI 280
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT MH AE G+AAHW
Sbjct: 281 VHTLWKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGEPLEVQIRTWDMHRTAEIGIAAHW 340
Query: 297 LYKETGNKLQ 306
YKE ++Q
Sbjct: 341 AYKEGKGEVQ 350
>gi|345869729|ref|ZP_08821685.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodococcus drewsii AZ1]
gi|343922591|gb|EGV33290.1| (p)ppGpp synthetase I, SpoT/RelA [Thiorhodococcus drewsii AZ1]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ KMRRK V I +++D RA+R++V + CY+ L
Sbjct: 249 GIKAEITGRPKHIYSIWKKMRRKGVDIAEIFDLRAVRIMV---------ETVADCYAALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW I EFDDYI PK + Y+SLHTAV GP+ +LEVQIRT +MH ++E G+AAH
Sbjct: 300 LVHGLWRHIPKEFDDYIATPKGNMYRSLHTAVIGPEDKSLEVQIRTYEMHRHSEFGVAAH 359
Query: 296 WLYKE 300
W YKE
Sbjct: 360 WAYKE 364
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
L P + +A++T ++ LA+RLG+W +K ELEDL LQP ++++
Sbjct: 171 LEPERRTKIARDTQRVYAPLANRLGIWQIKWELEDLSLRYLQPDEYKRI 219
>gi|253317214|ref|ZP_04840427.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|418895396|ref|ZP_13449491.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1057]
gi|377695202|gb|EHT19566.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1057]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|163847013|ref|YP_001635057.1| RelA/SpoT family protein [Chloroflexus aurantiacus J-10-fl]
gi|163668302|gb|ABY34668.1| RelA/SpoT family protein [Chloroflexus aurantiacus J-10-fl]
Length = 788
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ R K +YSI+ KM RK V + ++YD A+R++V D N + CY L
Sbjct: 296 GIKAEVTGRSKHIYSIWRKMERKGVPLERIYDQLAVRIIVDDPNNE-----VGACYQALG 350
Query: 236 IVH--RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
+VH W P+ EFDDYI PK S Y+S+HT V P+G EVQIR+ KMHE AEHG+A
Sbjct: 351 VVHGKMNWTPVMQEFDDYIAAPKESSYRSIHTTVILPEGLHCEVQIRSTKMHEEAEHGIA 410
Query: 294 AHWLYKETGN 303
AHW YKE N
Sbjct: 411 AHWRYKEGFN 420
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 7 YALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWS 66
+A PP K + VA+ETL I+ LA RLG+W +K+ELEDL F L P ++++ LA
Sbjct: 216 HATPPQKQQRVARETLEIYAPLAHRLGMWQMKSELEDLAFKTLHPDRYQEIARGLAMRKE 275
Query: 67 PRNRV 71
R+R+
Sbjct: 276 ARDRI 280
>gi|168066267|ref|XP_001785062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663355|gb|EDQ50123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 21/161 (13%)
Query: 150 GIALTSLVACEEALEKELLISTSYIPGME-VTLSSRLKSLYSIFSKMRRKDVGIHKVYDA 208
G+ ++S+ +EAL I G+E + L R K+LYS++ KM +K + ++ D
Sbjct: 307 GLVMSSIKNLDEALR---------IRGVEFIDLCGRPKNLYSVYKKMMKKKRSLEEILDV 357
Query: 209 RALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ 268
LR++V D+N CY L+IVH+L +P G+ DYIV+ KP+GY+SLHT V
Sbjct: 358 IGLRLIVSDENS---------CYEALEIVHQLCMP--GKSKDYIVDSKPNGYKSLHTVVI 406
Query: 269 GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS 309
G DG LEVQIRT KMH AE+GLAAHW YKE ++ + S
Sbjct: 407 GSDGYPLEVQIRTMKMHHQAEYGLAAHWRYKEDNSEHSAFS 447
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSP 67
ALP K +A ETL I+ LA+RLG+W KAELEDLCF L+P+ + DL+ S
Sbjct: 247 ALPSHKQIGIATETLGIFAPLANRLGIWRWKAELEDLCFKYLKPEDHQ----DLSMRLSE 302
Query: 68 RNRVG 72
R R G
Sbjct: 303 RCREG 307
>gi|410622952|ref|ZP_11333772.1| GTP pyrophosphokinase [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410157414|dbj|GAC29146.1| GTP pyrophosphokinase [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 715
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 9/117 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +YSI+ KM++K + +++D RALR+V DK +Q CY+ L VH +W
Sbjct: 236 RPKHIYSIWKKMQKKQLSFEELFDIRALRIV-ADK--------LQDCYAALGTVHTVWKH 286
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDYI PK +GYQS+HT + GP G ++E+QIRTQKMH+ AE G+AAHW YKE
Sbjct: 287 IPKEFDDYIATPKQNGYQSIHTVIMGPQGKSVEIQIRTQKMHQDAELGVAAHWKYKE 343
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
VA E I+ LA+RLG+ LK ELEDL F L P +++ +A M + R+G +
Sbjct: 158 VAHECSSIYAPLANRLGIGQLKWELEDLSFRYLHPNTYKR----IAEMLDEK-RIGREQY 212
Query: 77 ITTIV 81
I IV
Sbjct: 213 IIDIV 217
>gi|329767283|ref|ZP_08258809.1| hypothetical protein HMPREF0428_00506 [Gemella haemolysans M341]
gi|328836205|gb|EGF85875.1| hypothetical protein HMPREF0428_00506 [Gemella haemolysans M341]
Length = 725
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 21/159 (13%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ ++ R K +YSI+ KM +++ ++YD A+RV+V ++ CY+ L
Sbjct: 233 NIKAQVTGRPKHIYSIYKKMVKQNKTFDQIYDLLAVRVLVD---------SVADCYATLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+V+ LW+PI G DYI PKP+ YQSLHT V PDG LEVQIRT +MHE AE G+AAH
Sbjct: 284 LVNNLWVPIPGRIKDYIAMPKPNMYQSLHTTVIAPDGQTLEVQIRTYEMHEIAEKGIAAH 343
Query: 296 WLYKETG------------NKLQSISSMDESDIEASSSL 322
W YKE N Q I+ DE++ A S +
Sbjct: 344 WAYKEGKKVNKNNNFYEKLNWFQKIAENDETEATAESFM 382
>gi|379014840|ref|YP_005291076.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VC40]
gi|374363537|gb|AEZ37642.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VC40]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|239637561|ref|ZP_04678533.1| GTP pyrophosphokinase [Staphylococcus warneri L37603]
gi|239596779|gb|EEQ79304.1| GTP pyrophosphokinase [Staphylococcus warneri L37603]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 19/151 (12%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRIIVN---------TINDCYAILGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTYEMHEIAEHGVAAHWAYKE 348
Query: 301 TG----------NKLQSISSMDESDIEASSS 321
NKL + + E+D +S +
Sbjct: 349 GKTVNEKTQDFQNKLNWLKDLAETDHTSSDA 379
>gi|57650515|ref|YP_186528.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus COL]
gi|88195445|ref|YP_500249.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|221141097|ref|ZP_03565590.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|284024690|ref|ZP_06379088.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 132]
gi|384550458|ref|YP_005739710.1| GTP pyrophosphokinase, (p)ppGpp synthetase I, RelA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|384862233|ref|YP_005744953.1| GTP pyrophosphokinase, (p)ppGpp synthetase I, RelA [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384870173|ref|YP_005752887.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus T0131]
gi|385781917|ref|YP_005758088.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143236|ref|YP_005731629.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus TW20]
gi|387602972|ref|YP_005734493.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Staphylococcus
aureus subsp. aureus ST398]
gi|387780722|ref|YP_005755520.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus LGA251]
gi|404478985|ref|YP_006710415.1| GTP pyrophosphokinase [Staphylococcus aureus 08BA02176]
gi|415682436|ref|ZP_11447752.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CGS00]
gi|415686173|ref|ZP_11450310.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CGS01]
gi|416839675|ref|ZP_11903056.1| GTP pyrophosphokinase [Staphylococcus aureus O11]
gi|416846584|ref|ZP_11906633.1| GTP pyrophosphokinase [Staphylococcus aureus O46]
gi|417649291|ref|ZP_12299095.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21189]
gi|417653377|ref|ZP_12303108.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21193]
gi|417797567|ref|ZP_12444763.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21305]
gi|417799958|ref|ZP_12447090.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21310]
gi|417887946|ref|ZP_12532065.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21195]
gi|417896907|ref|ZP_12540850.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21235]
gi|417901229|ref|ZP_12545106.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21266]
gi|417903131|ref|ZP_12546986.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21269]
gi|418277930|ref|ZP_12892150.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21178]
gi|418285658|ref|ZP_12898326.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21209]
gi|418309946|ref|ZP_12921496.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21331]
gi|418318525|ref|ZP_12929927.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21232]
gi|418321376|ref|ZP_12932722.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus VCU006]
gi|418560386|ref|ZP_13124901.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21252]
gi|418564712|ref|ZP_13129133.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21264]
gi|418571915|ref|ZP_13136135.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21283]
gi|418574398|ref|ZP_13138567.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21333]
gi|418579557|ref|ZP_13143652.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1114]
gi|418582560|ref|ZP_13146638.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597458|ref|ZP_13160986.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21342]
gi|418597992|ref|ZP_13161506.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21343]
gi|418601540|ref|ZP_13164966.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21345]
gi|418641811|ref|ZP_13204016.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-24]
gi|418644086|ref|ZP_13206237.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-55]
gi|418648467|ref|ZP_13210511.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-88]
gi|418650678|ref|ZP_13212696.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-91]
gi|418654995|ref|ZP_13216878.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-105]
gi|418660671|ref|ZP_13222290.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-111]
gi|418872843|ref|ZP_13427169.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-125]
gi|418875573|ref|ZP_13429829.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC93]
gi|418892363|ref|ZP_13446476.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1176]
gi|418898269|ref|ZP_13452339.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418901138|ref|ZP_13455194.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1214]
gi|418903939|ref|ZP_13457980.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906577|ref|ZP_13460603.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418909485|ref|ZP_13463480.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG149]
gi|418917531|ref|ZP_13471490.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1267]
gi|418923315|ref|ZP_13477231.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1233]
gi|418925891|ref|ZP_13479793.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928982|ref|ZP_13482868.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1612]
gi|418946741|ref|ZP_13499153.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-157]
gi|418953538|ref|ZP_13505527.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-189]
gi|418982639|ref|ZP_13530347.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1242]
gi|418986307|ref|ZP_13533991.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1500]
gi|419773205|ref|ZP_14299216.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus CO-23]
gi|421148486|ref|ZP_15608146.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|424785467|ref|ZP_18212270.1| GTP pyrophosphokinase [Staphylococcus aureus CN79]
gi|440707473|ref|ZP_20888172.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21282]
gi|440735083|ref|ZP_20914694.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|443639864|ref|ZP_21123864.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21196]
gi|57284701|gb|AAW36795.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus COL]
gi|87203003|gb|ABD30813.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|269941119|emb|CBI49505.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus TW20]
gi|283470910|emb|CAQ50121.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Staphylococcus
aureus subsp. aureus ST398]
gi|302333307|gb|ADL23500.1| GTP pyrophosphokinase, (p)ppGpp synthetase I, RelA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302751462|gb|ADL65639.1| GTP pyrophosphokinase, (p)ppGpp synthetase I, RelA [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|315195536|gb|EFU25923.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CGS00]
gi|315198666|gb|EFU28994.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CGS01]
gi|323440813|gb|EGA98522.1| GTP pyrophosphokinase [Staphylococcus aureus O11]
gi|323442838|gb|EGB00463.1| GTP pyrophosphokinase [Staphylococcus aureus O46]
gi|329314308|gb|AEB88721.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus T0131]
gi|329728397|gb|EGG64834.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21189]
gi|329733068|gb|EGG69405.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21193]
gi|334267059|gb|EGL85529.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21305]
gi|334272490|gb|EGL90855.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21310]
gi|341840173|gb|EGS81693.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21235]
gi|341846388|gb|EGS87585.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21266]
gi|341850305|gb|EGS91429.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21269]
gi|341856975|gb|EGS97802.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21195]
gi|344177824|emb|CCC88303.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus LGA251]
gi|364522906|gb|AEW65656.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
11819-97]
gi|365169468|gb|EHM60716.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21209]
gi|365172889|gb|EHM63551.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21178]
gi|365225608|gb|EHM66851.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus VCU006]
gi|365237403|gb|EHM78249.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21331]
gi|365242988|gb|EHM83683.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21232]
gi|371971946|gb|EHO89337.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21252]
gi|371975849|gb|EHO93141.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21264]
gi|371978407|gb|EHO95656.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21283]
gi|371979125|gb|EHO96360.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21333]
gi|374394585|gb|EHQ65867.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21342]
gi|374398254|gb|EHQ69438.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21345]
gi|374400300|gb|EHQ71418.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21343]
gi|375018266|gb|EHS11846.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-24]
gi|375026380|gb|EHS19763.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-88]
gi|375026607|gb|EHS19987.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-55]
gi|375027964|gb|EHS21322.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-91]
gi|375031476|gb|EHS24756.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-111]
gi|375038457|gb|EHS31437.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-105]
gi|375366783|gb|EHS70764.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-125]
gi|375374758|gb|EHS78381.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-189]
gi|375377521|gb|EHS80983.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-157]
gi|377697584|gb|EHT21939.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1114]
gi|377702535|gb|EHT26857.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1214]
gi|377703685|gb|EHT27998.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1500]
gi|377704920|gb|EHT29229.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1242]
gi|377710970|gb|EHT35208.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1605]
gi|377730657|gb|EHT54724.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1176]
gi|377735274|gb|EHT59310.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1233]
gi|377738894|gb|EHT62903.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742954|gb|EHT66939.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744960|gb|EHT68937.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG2018]
gi|377750705|gb|EHT74643.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1267]
gi|377751862|gb|EHT75789.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG149]
gi|377761304|gb|EHT85180.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377763482|gb|EHT87338.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769645|gb|EHT93413.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC93]
gi|383973029|gb|EID89050.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus CO-23]
gi|394331629|gb|EJE57712.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|404440474|gb|AFR73667.1| GTP pyrophosphokinase [Staphylococcus aureus 08BA02176]
gi|421956877|gb|EKU09206.1| GTP pyrophosphokinase [Staphylococcus aureus CN79]
gi|436431178|gb|ELP28532.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436506229|gb|ELP42068.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21282]
gi|443406139|gb|ELS64723.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21196]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|403070228|ref|ZP_10911560.1| GTP pyrophosphokinase [Oceanobacillus sp. Ndiop]
Length = 733
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E +S R K LYSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIEAEMSGRPKHLYSIYQKMVLQNKQFNEIYDLLAVRIIVD---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAH
Sbjct: 284 IIHTNWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
>gi|417889932|ref|ZP_12534011.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21200]
gi|418282064|ref|ZP_12894853.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21202]
gi|418307492|ref|ZP_12919197.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21194]
gi|418889447|ref|ZP_13443580.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1524]
gi|341855625|gb|EGS96469.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21200]
gi|365171614|gb|EHM62439.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21202]
gi|365245586|gb|EHM86210.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21194]
gi|377752955|gb|EHT76873.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1524]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|317495495|ref|ZP_07953863.1| RelA/SpoT family protein [Gemella morbillorum M424]
gi|316914309|gb|EFV35787.1| RelA/SpoT family protein [Gemella morbillorum M424]
Length = 726
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 21/159 (13%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ ++ R K +YSI+ KM +++ ++YD A+RV+V ++ CY+ L
Sbjct: 233 NIKAQVTGRPKHIYSIYKKMVKQNKTFDQIYDLLAVRVLVN---------SVADCYATLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+V+ LW+PI G DYI PKP+ YQSLHT V PDG LEVQIRT +MHE AE G+AAH
Sbjct: 284 LVNNLWVPIPGRIKDYIAMPKPNMYQSLHTTVIAPDGQTLEVQIRTYEMHEIAEKGIAAH 343
Query: 296 WLYKETG------------NKLQSISSMDESDIEASSSL 322
W YKE N Q I+ DE++ A S +
Sbjct: 344 WAYKEGKKVNKNNNFYEKLNWFQKIAENDETEATAESFM 382
>gi|256828245|ref|YP_003156973.1| (p)ppGpp synthetase I SpoT/RelA [Desulfomicrobium baculatum DSM
4028]
gi|256577421|gb|ACU88557.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfomicrobium baculatum DSM
4028]
Length = 715
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 86/124 (69%), Gaps = 9/124 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R+K YSI+ KM+++ + + +++D A RV+V + ++ CY++L +VH L
Sbjct: 233 VKGRIKHTYSIYHKMKQRGLTLDQIFDMIAFRVIVNN---------LRECYTVLGLVHSL 283
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G+F DYI PK + YQSLH+ V GP+G +E+QIRT++MH+ AE+G+AAHW YKE
Sbjct: 284 WKPVPGKFKDYISMPKANMYQSLHSTVIGPEGERIEIQIRTEEMHQLAENGVAAHWSYKE 343
Query: 301 TGNK 304
G+K
Sbjct: 344 HGSK 347
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K RA+AQETL I+ LA+RLGL+ +K +LE+ ++P ++ ++
Sbjct: 154 KQRAIAQETLGIYAPLANRLGLYRIKVQLENYGLRYMKPDVYAQI 198
>gi|379021418|ref|YP_005298080.1| GTP pyrophosphokinase , (p)ppGppsynthetase I [Staphylococcus aureus
subsp. aureus M013]
gi|418562634|ref|ZP_13127091.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21262]
gi|418950240|ref|ZP_13502432.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-160]
gi|359830727|gb|AEV78705.1| GTP pyrophosphokinase , (p)ppGppsynthetase I [Staphylococcus aureus
subsp. aureus M013]
gi|371973738|gb|EHO91086.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21262]
gi|375377478|gb|EHS80945.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-160]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|336437345|ref|ZP_08617051.1| hypothetical protein HMPREF0988_02636 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336005471|gb|EGN35516.1| hypothetical protein HMPREF0988_02636 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 767
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 88/137 (64%), Gaps = 9/137 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ + R+K +SI+ KM ++ + +VYD A+R++V +++ CY+ L +
Sbjct: 261 IQAKVYGRVKHFFSIYKKMVNQNKTLDQVYDLFAVRIIV---------DSVKDCYAALGV 311
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H ++ PI G F DYI PKP+ YQSLHT + GP G E+QIRT++MH+ AE+G+AAHW
Sbjct: 312 IHEMYTPIPGRFKDYIAMPKPNMYQSLHTTLMGPSGQPFEIQIRTEEMHKTAEYGIAAHW 371
Query: 297 LYKETGNKLQSISSMDE 313
YKE G+ + + + +E
Sbjct: 372 KYKEGGDAAKVVQAQEE 388
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+ P K + A+ET+ I+ +A RLG+ +K EL+DL QP++++++ DL + R
Sbjct: 182 MRPEKQKEKAKETMDIYAPIAQRLGISKIKIELDDLSLKYSQPEVYQQLVHDLNERKTKR 241
Query: 69 NRVGYSRRITTIVSS 83
+ ++I + VS+
Sbjct: 242 EE--FVQQIVSEVST 254
>gi|15927214|ref|NP_374747.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus N315]
gi|21283313|ref|NP_646401.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MW2]
gi|148268114|ref|YP_001247057.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus JH9]
gi|150394182|ref|YP_001316857.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus JH1]
gi|269203259|ref|YP_003282528.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ED98]
gi|296275919|ref|ZP_06858426.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MR1]
gi|387150777|ref|YP_005742341.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Staphylococcus aureus
04-02981]
gi|415692758|ref|ZP_11454678.1| RelA/SpoT family protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|417651056|ref|ZP_12300819.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21172]
gi|417894333|ref|ZP_12538352.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21201]
gi|417897939|ref|ZP_12541865.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21259]
gi|418314427|ref|ZP_12925901.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21334]
gi|418316727|ref|ZP_12928162.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21340]
gi|418567175|ref|ZP_13131540.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21272]
gi|418640299|ref|ZP_13202531.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-3]
gi|418652842|ref|ZP_13214805.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-99]
gi|418661102|ref|ZP_13222704.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-122]
gi|418878550|ref|ZP_13432785.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1165]
gi|418881316|ref|ZP_13435533.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1213]
gi|418886899|ref|ZP_13441046.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1150]
gi|418914735|ref|ZP_13468705.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418919564|ref|ZP_13473509.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC348]
gi|418931938|ref|ZP_13485773.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1750]
gi|418934602|ref|ZP_13488424.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC128]
gi|418988698|ref|ZP_13536370.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1835]
gi|418991562|ref|ZP_13539223.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1096]
gi|419784623|ref|ZP_14310386.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-M]
gi|443636047|ref|ZP_21120165.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21236]
gi|13701432|dbj|BAB42726.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus N315]
gi|21204753|dbj|BAB95449.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MW2]
gi|147741183|gb|ABQ49481.1| (p)ppGpp synthetase I, SpoT/RelA [Staphylococcus aureus subsp.
aureus JH9]
gi|149946634|gb|ABR52570.1| RelA/SpoT family protein [Staphylococcus aureus subsp. aureus JH1]
gi|262075549|gb|ACY11522.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ED98]
gi|285817316|gb|ADC37803.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Staphylococcus aureus
04-02981]
gi|315129918|gb|EFT85908.1| RelA/SpoT family protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|329727240|gb|EGG63696.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21172]
gi|341849441|gb|EGS90584.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21259]
gi|341852478|gb|EGS93367.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21201]
gi|365233463|gb|EHM74417.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21334]
gi|365240690|gb|EHM81457.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21340]
gi|371982879|gb|EHP00028.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21272]
gi|375014863|gb|EHS08534.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-3]
gi|375021010|gb|EHS14517.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-99]
gi|375039533|gb|EHS32458.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-122]
gi|377694672|gb|EHT19037.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1165]
gi|377713116|gb|EHT37329.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1750]
gi|377717791|gb|EHT41966.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1835]
gi|377723684|gb|EHT47809.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1096]
gi|377724401|gb|EHT48517.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1150]
gi|377731059|gb|EHT55117.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1213]
gi|377755391|gb|EHT79290.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377767243|gb|EHT91050.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC348]
gi|377770696|gb|EHT94457.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIGC128]
gi|383363833|gb|EID41159.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus IS-M]
gi|443408556|gb|ELS67075.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus 21236]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|436839902|ref|YP_007324280.1| GTP pyrophosphokinase [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432168808|emb|CCO22174.1| GTP pyrophosphokinase [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 737
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E T+ R K +SI KM+R+ + + +V+D A RV+V +++ CYS+L +
Sbjct: 245 IEGTIYGRTKHKFSIHKKMQRQGLNLDEVHDIIAFRVIVD---------SVKDCYSVLGL 295
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH +W PI G F DYI PK + YQSLHT V GP+G +E+QIRT++M + AE+G+AAHW
Sbjct: 296 VHSMWKPISGRFKDYISIPKANMYQSLHTTVIGPEGERIEIQIRTEEMQQVAEYGIAAHW 355
Query: 297 LYKETGNKL 305
YKETG +
Sbjct: 356 QYKETGTSV 364
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Query: 3 FEFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
F+ SY K + +AQETL I+ LA+RLGL+ +K +LEDLC L+P ++
Sbjct: 165 FQKSY-----KQQLIAQETLDIYSPLANRLGLYMVKRDLEDLCLYYLKPDVY 211
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 539 GEVVIVCWPNGEIMRLRSGSTAADAA----MKVGLEGKLVLVNGQLVLPNTELKDGDIVE 594
E V V P GEI+ L G+T D A +VG VNG+LV T LK+GD +E
Sbjct: 403 NEEVYVFTPAGEIIELPDGATPVDFAYSIHTEVGNHCTGAKVNGRLVPLTTTLKNGDTIE 462
Query: 595 V 595
V
Sbjct: 463 V 463
>gi|418437259|ref|ZP_13009054.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS5]
gi|418443174|ref|ZP_13014773.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS7]
gi|387726919|gb|EIK14456.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS5]
gi|387736850|gb|EIK23938.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS7]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|262051284|ref|ZP_06023508.1| GTP pyrophosphokinase [Staphylococcus aureus 930918-3]
gi|259160921|gb|EEW45941.1| GTP pyrophosphokinase [Staphylococcus aureus 930918-3]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|418912249|ref|ZP_13466230.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG547]
gi|377722506|gb|EHT46632.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG547]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|49486467|ref|YP_043688.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MSSA476]
gi|253733115|ref|ZP_04867280.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus TCH130]
gi|257793707|ref|ZP_05642686.1| ppGpp hydrolase [Staphylococcus aureus A9781]
gi|258410994|ref|ZP_05681274.1| ppGpp hydrolase [Staphylococcus aureus A9763]
gi|258420205|ref|ZP_05683160.1| GTP pyrophosphokinase [Staphylococcus aureus A9719]
gi|258438207|ref|ZP_05689491.1| ppGpp hydrolase [Staphylococcus aureus A9299]
gi|258443670|ref|ZP_05692009.1| ppGpp hydrolase [Staphylococcus aureus A8115]
gi|258446877|ref|ZP_05695031.1| GTP pyrophosphokinase [Staphylococcus aureus A6300]
gi|258448791|ref|ZP_05696903.1| GTP pyrophosphokinase [Staphylococcus aureus A6224]
gi|258453609|ref|ZP_05701587.1| ppGpp hydrolase [Staphylococcus aureus A5937]
gi|282893138|ref|ZP_06301372.1| GTP pyrophosphokinase [Staphylococcus aureus A8117]
gi|295406755|ref|ZP_06816560.1| GTP pyrophosphokinase [Staphylococcus aureus A8819]
gi|297207646|ref|ZP_06924081.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297245662|ref|ZP_06929527.1| GTP pyrophosphokinase [Staphylococcus aureus A8796]
gi|300911728|ref|ZP_07129171.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus TCH70]
gi|418424820|ref|ZP_12997933.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS1]
gi|418427775|ref|ZP_13000780.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS2]
gi|418430620|ref|ZP_13003529.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433912|ref|ZP_13006353.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS4]
gi|418440156|ref|ZP_13011856.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS6]
gi|418449252|ref|ZP_13020636.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS9]
gi|418452062|ref|ZP_13023396.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS10]
gi|418455058|ref|ZP_13026317.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS11a]
gi|418457936|ref|ZP_13029135.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS11b]
gi|424775017|ref|ZP_18202016.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus CM05]
gi|448740360|ref|ZP_21722339.1| GTP pyrophosphokinase [Staphylococcus aureus KT/314250]
gi|448743282|ref|ZP_21725192.1| GTP pyrophosphokinase [Staphylococcus aureus KT/Y21]
gi|59798269|sp|Q6G8T5.1|RELA_STAAS RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|59798429|sp|Q99TL8.2|RELA_STAAN RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|59800175|sp|P0A0E9.1|RELA_STAAW RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|59800176|sp|P0A0F0.1|RELA_STAAU RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|2580433|dbj|BAA23138.1| ppGpp hydrolase [Staphylococcus aureus]
gi|49244910|emb|CAG43371.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MSSA476]
gi|253728871|gb|EES97600.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus TCH130]
gi|257787679|gb|EEV26019.1| ppGpp hydrolase [Staphylococcus aureus A9781]
gi|257840144|gb|EEV64608.1| ppGpp hydrolase [Staphylococcus aureus A9763]
gi|257843916|gb|EEV68310.1| GTP pyrophosphokinase [Staphylococcus aureus A9719]
gi|257848251|gb|EEV72242.1| ppGpp hydrolase [Staphylococcus aureus A9299]
gi|257851076|gb|EEV75019.1| ppGpp hydrolase [Staphylococcus aureus A8115]
gi|257854452|gb|EEV77401.1| GTP pyrophosphokinase [Staphylococcus aureus A6300]
gi|257858069|gb|EEV80958.1| GTP pyrophosphokinase [Staphylococcus aureus A6224]
gi|257864340|gb|EEV87090.1| ppGpp hydrolase [Staphylococcus aureus A5937]
gi|282764456|gb|EFC04582.1| GTP pyrophosphokinase [Staphylococcus aureus A8117]
gi|294968502|gb|EFG44526.1| GTP pyrophosphokinase [Staphylococcus aureus A8819]
gi|296887663|gb|EFH26561.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297177313|gb|EFH36565.1| GTP pyrophosphokinase [Staphylococcus aureus A8796]
gi|300885974|gb|EFK81176.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus TCH70]
gi|387717760|gb|EIK05758.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS3a]
gi|387718063|gb|EIK06058.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS2]
gi|387719270|gb|EIK07221.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS1]
gi|387724807|gb|EIK12446.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS4]
gi|387729870|gb|EIK17283.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS6]
gi|387736462|gb|EIK23556.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS9]
gi|387744943|gb|EIK31707.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS10]
gi|387745111|gb|EIK31873.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS11a]
gi|387746704|gb|EIK33433.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS11b]
gi|402346875|gb|EJU81945.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus CM05]
gi|408423735|emb|CCJ11146.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408425725|emb|CCJ13112.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408427712|emb|CCJ15075.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408429701|emb|CCJ26866.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408431688|emb|CCJ19003.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408433682|emb|CCJ20967.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408435674|emb|CCJ22934.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|408437658|emb|CCJ24901.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ST228]
gi|445548844|gb|ELY17091.1| GTP pyrophosphokinase [Staphylococcus aureus KT/314250]
gi|445563411|gb|ELY19572.1| GTP pyrophosphokinase [Staphylococcus aureus KT/Y21]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|389774995|ref|ZP_10193081.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter spathiphylli
B39]
gi|388437660|gb|EIL94442.1| RelA/SpoT family (p)ppGpp synthetase [Rhodanobacter spathiphylli
B39]
Length = 710
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 80/127 (62%), Gaps = 9/127 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+ L+ R K +YSI+ KM+RK + +YD RA+R++V + I CY+ L +
Sbjct: 224 IRADLAGRPKHIYSIWKKMQRKSLDFSDLYDIRAVRILVDN---------ITDCYAALGV 274
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH W + EFDDYI PK +GYQSLHTAV GP G LEVQIRT +MH E G+AAHW
Sbjct: 275 VHGRWPHLPNEFDDYIARPKANGYQSLHTAVIGPAGKTLEVQIRTHEMHRANELGVAAHW 334
Query: 297 LYKETGN 303
YKE G+
Sbjct: 335 RYKEGGS 341
>gi|347548906|ref|YP_004855234.1| putative (p)ppGpp synthetase [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346981977|emb|CBW85962.1| Putative (p)ppGpp synthetase [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRISNETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|254994034|ref|ZP_05276224.1| (p)ppGpp synthetase [Listeria monocytogenes FSL J2-064]
Length = 711
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|46907751|ref|YP_014140.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224124|ref|YP_002758231.1| (p)ppGpp synthetase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824418|ref|ZP_05229419.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J1-194]
gi|254852146|ref|ZP_05241494.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-503]
gi|254931458|ref|ZP_05264817.1| GTP pyrophosphokinase [Listeria monocytogenes HPB2262]
gi|300764810|ref|ZP_07074800.1| GTP pyrophosphokinase [Listeria monocytogenes FSL N1-017]
gi|386732261|ref|YP_006205757.1| (p)ppGpp synthetase [Listeria monocytogenes 07PF0776]
gi|404281082|ref|YP_006681980.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2755]
gi|404286945|ref|YP_006693531.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749867|ref|YP_006673333.1| GTP pyrophosphokinase [Listeria monocytogenes ATCC 19117]
gi|405752743|ref|YP_006676208.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2378]
gi|405755681|ref|YP_006679145.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2540]
gi|406704296|ref|YP_006754650.1| GTP pyrophosphokinase [Listeria monocytogenes L312]
gi|417316063|ref|ZP_12102721.1| (p)ppGpp synthetase [Listeria monocytogenes J1816]
gi|424714398|ref|YP_007015113.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823285|ref|ZP_18248298.1| GTP pyrophosphokinase [Listeria monocytogenes str. Scott A]
gi|46881020|gb|AAT04317.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
F2365]
gi|225876586|emb|CAS05295.1| Putative (p)ppGpp synthetase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258605450|gb|EEW18058.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-503]
gi|293583010|gb|EFF95042.1| GTP pyrophosphokinase [Listeria monocytogenes HPB2262]
gi|293593653|gb|EFG01414.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J1-194]
gi|300514486|gb|EFK41543.1| GTP pyrophosphokinase [Listeria monocytogenes FSL N1-017]
gi|328465560|gb|EGF36789.1| (p)ppGpp synthetase [Listeria monocytogenes J1816]
gi|332311965|gb|EGJ25060.1| GTP pyrophosphokinase [Listeria monocytogenes str. Scott A]
gi|384391019|gb|AFH80089.1| (p)ppGpp synthetase [Listeria monocytogenes 07PF0776]
gi|404219067|emb|CBY70431.1| GTP pyrophosphokinase [Listeria monocytogenes ATCC 19117]
gi|404221943|emb|CBY73306.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2378]
gi|404224881|emb|CBY76243.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2540]
gi|404227717|emb|CBY49122.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2755]
gi|404245874|emb|CBY04099.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361326|emb|CBY67599.1| GTP pyrophosphokinase [Listeria monocytogenes L312]
gi|424013582|emb|CCO64122.1| GTP pyrophosphokinase [Listeria monocytogenes serotype 4b str.
LL195]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|418994361|ref|ZP_13541996.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG290]
gi|377744158|gb|EHT68136.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG290]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|261855417|ref|YP_003262700.1| RelA/SpoT family protein [Halothiobacillus neapolitanus c2]
gi|261835886|gb|ACX95653.1| RelA/SpoT family protein [Halothiobacillus neapolitanus c2]
Length = 706
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM+RK + ++D RALRV V +Q CY+ L
Sbjct: 229 GIKARVYGRPKHIYSIWGKMQRKKLSFDGLFDVRALRVEVD---------TLQDCYAALS 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+ H L+ PI+ E+DDYI PK +GYQSLHTAV D +E+QIRT+ MHE AE G+AAH
Sbjct: 280 VAHSLFSPIEAEYDDYIARPKENGYQSLHTAVHALDDKVVEIQIRTRAMHEQAELGVAAH 339
Query: 296 WLYKETGN 303
W YKE G
Sbjct: 340 WRYKEGGG 347
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN--R 70
K RA+A ETL ++ +A RLGL +K ELEDL F L+P+I+++ +A + R R
Sbjct: 155 KRRAIAAETLDVYAPIAHRLGLGQIKWELEDLAFRHLEPEIYKR----IAHLLDERRTER 210
Query: 71 VGYSRRITTIVSS 83
Y R+ T + S
Sbjct: 211 EAYLLRVRTTLES 223
>gi|15924624|ref|NP_372158.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu50]
gi|156979952|ref|YP_001442211.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu3]
gi|255006419|ref|ZP_05145020.2| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|14247406|dbj|BAB57796.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu50]
gi|156722087|dbj|BAF78504.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Mu3]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|16803563|ref|NP_465048.1| hypothetical protein lmo1523 [Listeria monocytogenes EGD-e]
gi|47097020|ref|ZP_00234593.1| GTP pyrophosphokinase [Listeria monocytogenes str. 1/2a F6854]
gi|254828243|ref|ZP_05232930.1| relA [Listeria monocytogenes FSL N3-165]
gi|254912197|ref|ZP_05262209.1| GTP pyrophosphokinase [Listeria monocytogenes J2818]
gi|254936525|ref|ZP_05268222.1| relA [Listeria monocytogenes F6900]
gi|284801913|ref|YP_003413778.1| hypothetical protein LM5578_1668 [Listeria monocytogenes 08-5578]
gi|284995055|ref|YP_003416823.1| hypothetical protein LM5923_1620 [Listeria monocytogenes 08-5923]
gi|386043834|ref|YP_005962639.1| GTP pyrophosphokinase [Listeria monocytogenes 10403S]
gi|386047175|ref|YP_005965507.1| relA [Listeria monocytogenes J0161]
gi|386050499|ref|YP_005968490.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-561]
gi|386053776|ref|YP_005971334.1| GTP pyrophosphokinase [Listeria monocytogenes Finland 1998]
gi|404284015|ref|YP_006684912.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2372]
gi|404410825|ref|YP_006696413.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC5850]
gi|405758571|ref|YP_006687847.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2479]
gi|16410952|emb|CAC99601.1| relA [Listeria monocytogenes EGD-e]
gi|47014602|gb|EAL05562.1| GTP pyrophosphokinase [Listeria monocytogenes str. 1/2a F6854]
gi|258600631|gb|EEW13956.1| relA [Listeria monocytogenes FSL N3-165]
gi|258609119|gb|EEW21727.1| relA [Listeria monocytogenes F6900]
gi|284057475|gb|ADB68416.1| hypothetical protein LM5578_1668 [Listeria monocytogenes 08-5578]
gi|284060522|gb|ADB71461.1| hypothetical protein LM5923_1620 [Listeria monocytogenes 08-5923]
gi|293590170|gb|EFF98504.1| GTP pyrophosphokinase [Listeria monocytogenes J2818]
gi|345534166|gb|AEO03607.1| relA [Listeria monocytogenes J0161]
gi|345537068|gb|AEO06508.1| GTP pyrophosphokinase [Listeria monocytogenes 10403S]
gi|346424345|gb|AEO25870.1| GTP pyrophosphokinase [Listeria monocytogenes FSL R2-561]
gi|346646427|gb|AEO39052.1| GTP pyrophosphokinase [Listeria monocytogenes Finland 1998]
gi|404230651|emb|CBY52055.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC5850]
gi|404233517|emb|CBY54920.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2372]
gi|404236453|emb|CBY57855.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2479]
gi|441471216|emb|CCQ20971.1| GTP pyrophosphokinase [Listeria monocytogenes]
gi|441474345|emb|CCQ24099.1| GTP pyrophosphokinase [Listeria monocytogenes N53-1]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|49483878|ref|YP_041102.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MRSA252]
gi|87162370|ref|YP_494285.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221748|ref|YP_001332570.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161509859|ref|YP_001575518.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257425758|ref|ZP_05602182.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428418|ref|ZP_05604816.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257431056|ref|ZP_05607435.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433742|ref|ZP_05610100.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus E1410]
gi|257436657|ref|ZP_05612701.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus M876]
gi|258450540|ref|ZP_05698602.1| GTP pyrophosphokinase [Staphylococcus aureus A5948]
gi|282904214|ref|ZP_06312102.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus C160]
gi|282906040|ref|ZP_06313895.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908953|ref|ZP_06316771.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911270|ref|ZP_06319072.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914439|ref|ZP_06322225.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus M899]
gi|282916902|ref|ZP_06324660.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus D139]
gi|282919408|ref|ZP_06327143.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus C427]
gi|282920183|ref|ZP_06327908.1| GTP pyrophosphokinase [Staphylococcus aureus A9765]
gi|282924732|ref|ZP_06332400.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus C101]
gi|283770708|ref|ZP_06343600.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus H19]
gi|283958394|ref|ZP_06375845.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293503512|ref|ZP_06667359.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510530|ref|ZP_06669236.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus M809]
gi|293531071|ref|ZP_06671753.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus M1015]
gi|294848663|ref|ZP_06789409.1| GTP pyrophosphokinase [Staphylococcus aureus A9754]
gi|297590823|ref|ZP_06949461.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MN8]
gi|384547864|ref|YP_005737117.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ED133]
gi|384867394|ref|YP_005747590.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus TCH60]
gi|386729333|ref|YP_006195716.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 71193]
gi|386831240|ref|YP_006237894.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|418978356|ref|ZP_13526157.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus DR10]
gi|422742582|ref|ZP_16796585.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MRSA177]
gi|422746071|ref|ZP_16800004.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MRSA131]
gi|59798275|sp|Q6GG70.1|RELA_STAAR RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
gi|49242007|emb|CAG40705.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus MRSA252]
gi|87128344|gb|ABD22858.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374548|dbj|BAF67808.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160368668|gb|ABX29639.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271452|gb|EEV03598.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275259|gb|EEV06746.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278259|gb|EEV08901.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281835|gb|EEV11972.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus E1410]
gi|257284008|gb|EEV14131.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus M876]
gi|257861698|gb|EEV84497.1| GTP pyrophosphokinase [Staphylococcus aureus A5948]
gi|282313567|gb|EFB43962.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus C101]
gi|282317218|gb|EFB47592.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus C427]
gi|282319389|gb|EFB49741.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus D139]
gi|282321620|gb|EFB51945.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus M899]
gi|282324965|gb|EFB55275.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327217|gb|EFB57512.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331332|gb|EFB60846.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282594531|gb|EFB99516.1| GTP pyrophosphokinase [Staphylococcus aureus A9765]
gi|282595832|gb|EFC00796.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus C160]
gi|283460855|gb|EFC07945.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus H19]
gi|283790543|gb|EFC29360.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920339|gb|EFD97405.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus M1015]
gi|291095178|gb|EFE25443.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466894|gb|EFF09414.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus M809]
gi|294824689|gb|EFG41112.1| GTP pyrophosphokinase [Staphylococcus aureus A9754]
gi|297575709|gb|EFH94425.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MN8]
gi|298694913|gb|ADI98135.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus ED133]
gi|312437899|gb|ADQ76970.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus TCH60]
gi|320140479|gb|EFW32333.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144018|gb|EFW35787.1| GTP diphosphokinase [Staphylococcus aureus subsp. aureus MRSA177]
gi|379993972|gb|EIA15417.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus DR10]
gi|384230626|gb|AFH69873.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus 71193]
gi|385196632|emb|CCG16262.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus HO 5096
0412]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|282928269|ref|ZP_06335874.1| GTP pyrophosphokinase [Staphylococcus aureus A10102]
gi|282590076|gb|EFB95158.1| GTP pyrophosphokinase [Staphylococcus aureus A10102]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|14325225|dbj|BAB60670.1| Rel [Listeria monocytogenes]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|295428209|ref|ZP_06820841.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|295128567|gb|EFG58201.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus EMRSA16]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|217964330|ref|YP_002350008.1| GTP pyrophosphokinase [Listeria monocytogenes HCC23]
gi|290893882|ref|ZP_06556860.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J2-071]
gi|386008294|ref|YP_005926572.1| GTP pyrophosphokinase [Listeria monocytogenes L99]
gi|386026896|ref|YP_005947672.1| putative (p)ppGpp synthetase [Listeria monocytogenes M7]
gi|404407961|ref|YP_006690676.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2376]
gi|217333600|gb|ACK39394.1| GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Listeria
monocytogenes HCC23]
gi|290556599|gb|EFD90135.1| GTP pyrophosphokinase [Listeria monocytogenes FSL J2-071]
gi|307571104|emb|CAR84283.1| GTP pyrophosphokinase [Listeria monocytogenes L99]
gi|336023477|gb|AEH92614.1| putative (p)ppGpp synthetase [Listeria monocytogenes M7]
gi|404242110|emb|CBY63510.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC2376]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|16800626|ref|NP_470894.1| hypothetical protein lin1558 [Listeria innocua Clip11262]
gi|422413014|ref|ZP_16489973.1| GTP diphosphokinase [Listeria innocua FSL S4-378]
gi|16414045|emb|CAC96789.1| relA [Listeria innocua Clip11262]
gi|313618809|gb|EFR90701.1| GTP diphosphokinase [Listeria innocua FSL S4-378]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|384864853|ref|YP_005750212.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((p)ppGpp synthetase) [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|312830020|emb|CBX34862.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((p)ppGpp synthetase) [Staphylococcus
aureus subsp. aureus ECT-R 2]
Length = 729
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|258424059|ref|ZP_05686941.1| GTP pyrophosphokinase [Staphylococcus aureus A9635]
gi|257845680|gb|EEV69712.1| GTP pyrophosphokinase [Staphylococcus aureus A9635]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|253732290|ref|ZP_04866455.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724079|gb|EES92808.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|434402920|ref|YP_007145805.1| (p)ppGpp synthetase, RelA/SpoT family [Cylindrospermum stagnale PCC
7417]
gi|428257175|gb|AFZ23125.1| (p)ppGpp synthetase, RelA/SpoT family [Cylindrospermum stagnale PCC
7417]
Length = 756
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 82/136 (60%), Gaps = 10/136 (7%)
Query: 179 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 238
V +S R K LY I+ KM R+ H++YD ALR++V + CY L +VH
Sbjct: 253 VDVSGRTKHLYGIYQKMHRQQKEFHEIYDLAALRIIVQTN---------EECYRALAVVH 303
Query: 239 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 298
+ PI G F DYI PKP+ YQSLHT V G G LEVQIRTQ+MH AE+G+AAHW Y
Sbjct: 304 DAFRPIPGRFKDYIGLPKPNRYQSLHTGVMGLTGRPLEVQIRTQEMHHVAEYGIAAHWKY 363
Query: 299 KETGNKLQS-ISSMDE 313
KE+G S ++ DE
Sbjct: 364 KESGGSNNSQVTGTDE 379
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+P K R +AQET I+ LA+RLG+W K ELEDL F L+P+ FR+++ ++ + R
Sbjct: 171 MPDEKRRRIAQETRDIFAPLANRLGIWQFKWELEDLAFKYLEPEAFRQIQTYVSEKRAAR 230
>gi|404413602|ref|YP_006699189.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC7179]
gi|404239301|emb|CBY60702.1| GTP pyrophosphokinase [Listeria monocytogenes SLCC7179]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|338997157|ref|ZP_08635860.1| GTP pyrophosphokinase [Halomonas sp. TD01]
gi|338765991|gb|EGP20920.1| GTP pyrophosphokinase [Halomonas sp. TD01]
Length = 758
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 78/119 (65%), Gaps = 9/119 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K +YSI+ KM+RK + +V+D RA+R++V P + CY++L IVH
Sbjct: 259 VDGRAKHIYSIWRKMKRKRIDFSQVHDVRAVRILV---------PDVADCYTVLGIVHSR 309
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
W + EFDDYI NPK +GYQSLHTAV GP+ LE+QIRT MH+ AE G+ AHW YK
Sbjct: 310 WHHVPNEFDDYIANPKKNGYQSLHTAVMGPENKVLEIQIRTFAMHDEAELGVCAHWRYK 368
>gi|422416024|ref|ZP_16492981.1| GTP diphosphokinase [Listeria innocua FSL J1-023]
gi|423100605|ref|ZP_17088312.1| GTP diphosphokinase [Listeria innocua ATCC 33091]
gi|313623673|gb|EFR93827.1| GTP diphosphokinase [Listeria innocua FSL J1-023]
gi|370792829|gb|EHN60672.1| GTP diphosphokinase [Listeria innocua ATCC 33091]
Length = 738
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|59798426|sp|Q931Q4.2|RELA_STAAM RecName: Full=GTP pyrophosphokinase; AltName: Full=(p)ppGpp
synthase; AltName: Full=ATP:GTP
3'-pyrophosphotransferase; AltName: Full=ppGpp synthase
I
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|418884672|ref|ZP_13438855.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1769]
gi|377711924|gb|EHT36149.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus CIG1769]
Length = 700
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 233 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 284 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 343
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 344 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 379
>gi|418446239|ref|ZP_13017712.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS8]
gi|387735171|gb|EIK22308.1| GTP pyrophosphokinase [Staphylococcus aureus subsp. aureus VRS8]
Length = 736
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|339629624|ref|YP_004721267.1| GTP pyrophosphokinase [Sulfobacillus acidophilus TPY]
gi|379007260|ref|YP_005256711.1| (p)ppGpp synthetase I SpoT/RelA [Sulfobacillus acidophilus DSM
10332]
gi|339287413|gb|AEJ41524.1| GTP pyrophosphokinase [Sulfobacillus acidophilus TPY]
gi|361053522|gb|AEW05039.1| (p)ppGpp synthetase I, SpoT/RelA [Sulfobacillus acidophilus DSM
10332]
Length = 719
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
GM +S R K LYSI+ KM ++ ++YD A+RV+V +++ CY++L
Sbjct: 227 GMVSEVSGRAKHLYSIYQKMHKQGKDFGQIYDLVAVRVLV---------ESVKDCYAVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH AE+G+AAH
Sbjct: 278 LVHSLWKPVPGRFKDYIAMPKSNLYQSLHTTVIGPHGEPLEVQIRTFEMHHTAEYGIAAH 337
Query: 296 WLYKETGNK 304
W YKE +K
Sbjct: 338 WRYKEGSSK 346
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
LP + +A+ET+ I+ LA RLG++ +K ELEDL F LQP +++M+
Sbjct: 149 LPQDRVTRIAKETMEIYAPLAHRLGIFRIKWELEDLAFQYLQPAAYQEMK 198
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 497 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS 556
K+ LR +L W+ +R A ++ K + D V V P G+++ L +
Sbjct: 351 FEQKLSWLRQLLEWQRDMRDAAEFMETL---KVDLFSDEV------FVFTPKGDVIDLPA 401
Query: 557 GSTAADAAMKV----GLEGKLVLVNGQLVLPNTELKDGDIVEVRV 597
G+T D A ++ G VNG++V T L+ GDIVE+ V
Sbjct: 402 GATPVDFAYRIHTDIGHHCVGAKVNGRIVPLATPLESGDIVEILV 446
>gi|452995059|emb|CCQ93294.1| GTP pyrophosphokinase (RelA/SpoT) [Clostridium ultunense Esp]
Length = 723
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 87/132 (65%), Gaps = 10/132 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM + +++YD A+R++V + ++ CY++L
Sbjct: 227 GIKCDISGRPKHIYSIYRKMFLQHKEFNEIYDLLAIRIIVEN---------VRDCYAVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LEVQIRTQ+MH AE+G+AAH
Sbjct: 278 VVHTLWKPMPGRFKDYIAMPKANLYQSLHTTVIGPEGEPLEVQIRTQEMHRTAEYGIAAH 337
Query: 296 WLYKETGNKLQS 307
W YKE G +L+
Sbjct: 338 WAYKE-GKRLKG 348
>gi|422809604|ref|ZP_16858015.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Listeria
monocytogenes FSL J1-208]
gi|378753218|gb|EHY63803.1| GTP pyrophosphokinase, (p)ppGpp synthetase I [Listeria
monocytogenes FSL J1-208]
Length = 738
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|212638570|ref|YP_002315090.1| GTP pyrophosphokinase [Anoxybacillus flavithermus WK1]
gi|212560050|gb|ACJ33105.1| GTP pyrophosphokinase (ppGpp synthetase) [Anoxybacillus
flavithermus WK1]
Length = 732
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 GIQAEISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIV---------ESIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPKGEPLEVQIRTFEMHHIAEFGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPIEKQRRIANETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|116872952|ref|YP_849733.1| GTP pyrophosphokinase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741830|emb|CAK20954.1| GTP pyrophosphokinase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 738
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|414160989|ref|ZP_11417252.1| GTP pyrophosphokinase [Staphylococcus simulans ACS-120-V-Sch1]
gi|410876668|gb|EKS24566.1| GTP pyrophosphokinase [Staphylococcus simulans ACS-120-V-Sch1]
Length = 729
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 85/130 (65%), Gaps = 10/130 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V +I+ CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMMKQKKQFDQIFDLLAVRIIVD---------SIKDCYAVLGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 301 TGNKLQSISS 310
G K+ +S
Sbjct: 349 -GKKVTDDNS 357
>gi|289434803|ref|YP_003464675.1| GTP pyrophosphokinase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171047|emb|CBH27589.1| GTP pyrophosphokinase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 738
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|389571985|ref|ZP_10162073.1| GTP diphosphokinase [Bacillus sp. M 2-6]
gi|388428471|gb|EIL86268.1| GTP diphosphokinase [Bacillus sp. M 2-6]
Length = 736
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKAEFSGRPKHIYSIYRKMVMQNKQFNEIYDLLAVRILVD---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHEIAEYGIAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 345
W YKE +S S +E+ + S ++ + TD + SLK+
Sbjct: 344 WAYKEGK---ESAESTEEAVFQKKLSWFREILEFQNESTDAEEFMESLKI 390
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|90408289|ref|ZP_01216454.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Psychromonas sp.
CNPT3]
gi|90310590|gb|EAS38710.1| (p)ppGpp synthetase I (GTP pyrophosphokinase) [Psychromonas sp.
CNPT3]
Length = 737
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 9/131 (6%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM++K++ +++D RA+RVVV +Q CY+ L +H W
Sbjct: 249 GRPKHIYSIYLKMQKKNLKFEELFDVRAIRVVV---------EKLQDCYAALGAIHTQWH 299
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
I EFDDYI NPK +GYQS+HT V G G ++EVQIRTQKMH+ AE G+AAHW YKE
Sbjct: 300 HIPSEFDDYIANPKANGYQSIHTVVLGAQGQSVEVQIRTQKMHDDAELGVAAHWKYKEGT 359
Query: 303 NKLQSISSMDE 313
+S S +E
Sbjct: 360 AGGKSASGYEE 370
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
+A+E I+ LA+RLG+ LK ELEDL F LQP I++K+ LA
Sbjct: 172 LAREVTSIYAPLANRLGIGQLKWELEDLAFRYLQPTIYKKIAKQLA 217
>gi|406941922|gb|EKD74281.1| hypothetical protein ACD_45C00008G0001 [uncultured bacterium]
Length = 726
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ ++ R K +YSI+ K RKD+ +YD A+R++V P + CY+ L I
Sbjct: 249 IKADITGRAKHIYSIYLKTLRKDLDYQHIYDYSAIRILV---------PKLSDCYAALSI 299
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH L+ + EFDDYI +PKP+GY+S+HTAV GP+ LE+QIRT+ MH AEHG+AAHW
Sbjct: 300 VHDLFEHVAEEFDDYISHPKPNGYRSIHTAVIGPNDKHLEIQIRTRDMHIEAEHGVAAHW 359
Query: 297 LYKE 300
+YKE
Sbjct: 360 VYKE 363
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
PA+ + +A+ET+ I+ LA+RLG+ LK ELED F + P ++ + LA R
Sbjct: 172 PAERKRIAEETMDIYAPLANRLGIGQLKWELEDHAFHYIDPDTYKTIANFLAE-----RR 226
Query: 71 VGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 107
+ +RI T + TA T +H+ S+
Sbjct: 227 IDRKQRIDTTIHYLKEALATAHIKADITGRAKHIYSI 263
>gi|404417935|ref|ZP_10999717.1| GTP pyrophosphokinase [Staphylococcus arlettae CVD059]
gi|403489651|gb|EJY95214.1| GTP pyrophosphokinase [Staphylococcus arlettae CVD059]
Length = 678
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L +VH L
Sbjct: 187 INGRPKHIYSIYRKMVKQKKQFDQIFDLLAIRVIVN---------SINDCYAILGLVHTL 237
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 238 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTFEMHEIAEHGVAAHWAYKE 297
>gi|254414928|ref|ZP_05028692.1| RelA/SpoT family protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196178417|gb|EDX73417.1| RelA/SpoT family protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 751
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 79/124 (63%), Gaps = 9/124 (7%)
Query: 179 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 238
V L+SR K LY I+ KM+R++ H++YD A+R++V G CY L +VH
Sbjct: 249 VDLNSRPKHLYGIYQKMQRRNKEFHEIYDLAAMRIIVETNEG---------CYRALAVVH 299
Query: 239 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 298
+ PI G F DYI PKP+ YQSLHT V G G +EVQIRT +MH AE+G+AAHW Y
Sbjct: 300 DAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGFHGRPIEVQIRTLEMHRIAEYGIAAHWKY 359
Query: 299 KETG 302
KETG
Sbjct: 360 KETG 363
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
L P K RA+AQET I+ LA+RLG+ K ELEDL F L+P +RK++
Sbjct: 167 LKPQKQRAIAQETREIFAPLANRLGIGRFKWELEDLSFKYLEPNAYRKIQ 216
>gi|433444159|ref|ZP_20409169.1| GTP pyrophosphokinase [Anoxybacillus flavithermus TNO-09.006]
gi|432001807|gb|ELK22676.1| GTP pyrophosphokinase [Anoxybacillus flavithermus TNO-09.006]
Length = 732
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 GIQAEISGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRIIV---------ESIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MH AE G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVVGPKGEPLEVQIRTFEMHHIAEFGIAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPIEKQRRIANETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|323144160|ref|ZP_08078796.1| GTP diphosphokinase [Succinatimonas hippei YIT 12066]
gi|322416068|gb|EFY06766.1| GTP diphosphokinase [Succinatimonas hippei YIT 12066]
Length = 743
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 87/136 (63%), Gaps = 13/136 (9%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
KELL S+ G+ + R K +YSI+ KM++K + +++YD RA+RVV+
Sbjct: 235 KELLESS----GIHGEVYGRPKHIYSIWRKMQKKHLEFNELYDVRAVRVVL--------- 281
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
+Q CY+ L ++H W I EFDDYI NPKP+GYQS+HT V G A+E+QIRT M
Sbjct: 282 EKLQDCYAALGVIHTRWHHISSEFDDYIANPKPNGYQSIHTVVYGDGHKAVEIQIRTAAM 341
Query: 285 HEYAEHGLAAHWLYKE 300
H+ AE G+AAHW YKE
Sbjct: 342 HQMAELGVAAHWKYKE 357
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
+A+E I+ LA+RLG+ LK ELEDL F L P I+R + L R R
Sbjct: 172 IAKEIANIYAPLANRLGIGQLKWELEDLAFRCLHPDIYRDIANKLDEKRIDRER 225
>gi|430750699|ref|YP_007213607.1| RelA/SpoT family (p)ppGpp synthetase [Thermobacillus composti KWC4]
gi|430734664|gb|AGA58609.1| (p)ppGpp synthetase, RelA/SpoT family [Thermobacillus composti
KWC4]
Length = 730
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ KM K+ +++YD A+R++V + ++ CY+ L
Sbjct: 227 GIQGDISGRPKHIYSIYKKMTEKNKQFNEIYDLLAIRIIVDN---------LKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP+G LEVQIRT +MH +E+G+AAH
Sbjct: 278 IIHTLWRPMPGRFKDYIAMPKANMYQSLHTTVIGPNGEPLEVQIRTWEMHRTSEYGIAAH 337
Query: 296 WLYKE 300
W YKE
Sbjct: 338 WAYKE 342
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIAHETLEIYCPIAHRLGMSAIKWEMEDIALRYLNPQQYYRI 197
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 491 TSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGE 550
T+ A KV+ R +L + + R A +S K + D +V V P GE
Sbjct: 345 TNPNAGFGEKVKWFREILDLQNEARDAAEFMESL---KMDFFSD------LVFVFSPKGE 395
Query: 551 IMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
+ L +GS D A +V E G + VNG++V + +LK GDIVE+
Sbjct: 396 VFELPAGSVPLDFAYRVHTEVGNRTIGAKVNGRIVPLDHKLKTGDIVEI 444
>gi|406998160|gb|EKE16104.1| hypothetical protein ACD_11C00030G0012 [uncultured bacterium]
Length = 492
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Query: 179 VTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH 238
V + R KSLYS F K+++ D+ I+KV+D A+R++V + I CY L IVH
Sbjct: 235 VDIHGRAKSLYSSFLKLKKYDMDINKVHDLTAVRIIVSE---------IADCYEALGIVH 285
Query: 239 RLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLY 298
+ + P+ G DYI PKP+GYQS+HT + GP+G LEVQIRT KMH AE G+AAHW+Y
Sbjct: 286 KKYRPMIGRIKDYISLPKPNGYQSIHTTIFGPEGRILEVQIRTLKMHNEAEFGIAAHWIY 345
Query: 299 KETGNK 304
E K
Sbjct: 346 SEKAKK 351
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
PP K +A+ET+ I+ +A+RLG+ ++++L+DL F L+P+ ++ + + + R
Sbjct: 154 PPEKQLRIAKETMEIFAPIANRLGIGEIRSQLQDLSFEYLEPENYKFTKETITKNYQERE 213
Query: 70 R 70
R
Sbjct: 214 R 214
>gi|352100954|ref|ZP_08958465.1| GTP pyrophosphokinase [Halomonas sp. HAL1]
gi|350600875|gb|EHA16932.1| GTP pyrophosphokinase [Halomonas sp. HAL1]
Length = 758
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 9/119 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K +YSI+ KM+RK + +V+D RA+R++V P + CY++L I+H
Sbjct: 259 VDGRAKHIYSIWRKMKRKRIDFSQVHDVRAVRILV---------PEVADCYTVLGIIHSR 309
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
W + EFDDYI NPK +GYQSLHTAV GP+ LE+QIRT MH+ AE G+ AHW YK
Sbjct: 310 WHHVPNEFDDYIANPKKNGYQSLHTAVMGPENKVLEIQIRTFAMHDEAELGVCAHWRYK 368
>gi|167623153|ref|YP_001673447.1| (p)ppGpp synthetase I SpoT/RelA [Shewanella halifaxensis HAW-EB4]
gi|167353175|gb|ABZ75788.1| (p)ppGpp synthetase I, SpoT/RelA [Shewanella halifaxensis HAW-EB4]
Length = 735
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K +YSI+ KM+ K + +++D RA+R+V +Q CY L +VH LW
Sbjct: 250 GRPKHIYSIWKKMKGKQLKFDELFDVRAVRIVT---------DRLQDCYGALGVVHTLWQ 300
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
I EFDDY+ NPKP+GYQS+HT V GP+ +E+QIRT++MHE AE G+AAHW YKE
Sbjct: 301 HISREFDDYVANPKPNGYQSIHTVVVGPEDKTVEIQIRTEQMHEDAELGVAAHWKYKE 358
>gi|315282436|ref|ZP_07870851.1| GTP diphosphokinase [Listeria marthii FSL S4-120]
gi|313613919|gb|EFR87648.1| GTP diphosphokinase [Listeria marthii FSL S4-120]
Length = 738
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|147677380|ref|YP_001211595.1| guanosine polyphosphate pyrophosphohydrolases/synthetases
[Pelotomaculum thermopropionicum SI]
gi|146273477|dbj|BAF59226.1| guanosine polyphosphate pyrophosphohydrolases/synthetases
[Pelotomaculum thermopropionicum SI]
Length = 765
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 80/127 (62%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI++KM + +++++D A+R +V ++ CY+ L
Sbjct: 264 GIEAEIQGRPKHFYSIYAKMIEQQKDLNEIFDVMAVRCLV---------ETVRDCYATLG 314
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W PI G F DYI PK + YQSLHT V GP G LE+QIRT++MH AE+G+AAH
Sbjct: 315 IVHTMWTPIPGRFKDYIAMPKSNMYQSLHTTVIGPQGEPLEIQIRTREMHRTAEYGIAAH 374
Query: 296 WLYKETG 302
W YKE G
Sbjct: 375 WRYKEGG 381
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
P K +A ETL I+ LA RLG++ +K ELEDL F +P + ++ +AS R
Sbjct: 187 PEPKQVEIANETLEIFAPLAHRLGIYRIKWELEDLSFRFKEPDRYFELVNKIASTRDKRE 246
Query: 70 RVGYSRRITTIVSSPPLD-----ERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDR 123
Y R + +I++ + E ++ + + + KDL E FD+++ R
Sbjct: 247 E--YIRSVISILAGKLEEVGIEAEIQGRPKHFYSIYAKMIEQQKDLNEI---FDVMAVR 300
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 497 INNKVRLLRTMLRWEEQLRSEASLRQS-KLGGKANGNPDSVVPGEVVIVCWPNGEIMRLR 555
+ K+ LR +L W+ LR +S K+ A+ VV V P G+++ L
Sbjct: 387 FDKKLAWLRQLLEWQHDLRDAREFMESLKIDLFAD----------VVFVFSPKGDVIELP 436
Query: 556 SGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
+GS D A + VG VNG++V +LK+GDIVE+
Sbjct: 437 AGSIPLDFAYRIHTDVGHRCVGARVNGRIVPLEYKLKNGDIVEI 480
>gi|347731510|ref|ZP_08864606.1| relA/SpoT family protein [Desulfovibrio sp. A2]
gi|347519829|gb|EGY26978.1| relA/SpoT family protein [Desulfovibrio sp. A2]
Length = 722
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 82/122 (67%), Gaps = 9/122 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R+K YSI+ KM ++D+ + ++D A RV+V D ++ CY++L ++H
Sbjct: 233 VRGRIKHKYSIYKKMVQQDLTLDDMHDIIAFRVIVDD---------LRDCYAVLGLMHAQ 283
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK +GY+SLHT V GP+G +E+QIRT++MH AEHG+A+HWLYKE
Sbjct: 284 WKPVHGRFKDYISMPKANGYRSLHTTVIGPEGERMEIQIRTEEMHRLAEHGVASHWLYKE 343
Query: 301 TG 302
G
Sbjct: 344 GG 345
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
P K + +AQET+ I+ LA+RLGL +K ELEDL F L+P ++ ++ + W N+
Sbjct: 152 PHKQKLIAQETMDIYAPLANRLGLHRIKLELEDLSFRYLKPDVYAQI-----NEWLDTNQ 206
Query: 71 VGYSRRITTIVS 82
V S I +++
Sbjct: 207 VVESHYIERVIT 218
>gi|47094426|ref|ZP_00232112.1| GTP pyrophosphokinase [Listeria monocytogenes str. 4b H7858]
gi|47017201|gb|EAL08048.1| GTP pyrophosphokinase [Listeria monocytogenes str. 4b H7858]
Length = 724
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 219 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 269
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 270 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 329
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 330 WAYKE-GKVVNSKTSFD 345
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 141 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 189
>gi|124266771|ref|YP_001020775.1| GTP diphosphokinase [Methylibium petroleiphilum PM1]
gi|124259546|gb|ABM94540.1| GTP diphosphokinase [Methylibium petroleiphilum PM1]
Length = 762
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K LYSI+ KMR K + +V D RALRV+V D + CY+ L
Sbjct: 261 GVRAEVQGRPKHLYSIWKKMRGKHLDFERVLDVRALRVIVDD---------VPACYATLG 311
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH LW + EFDDYI PK +GYQSLHT V +E+QIRT MHE+AE G+AAH
Sbjct: 312 RVHELWRSLPEEFDDYIARPKANGYQSLHTVVLDEQDRPIEIQIRTTAMHEHAESGIAAH 371
Query: 296 WLYKETGNK 304
W YKE G +
Sbjct: 372 WAYKEAGAR 380
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 32/43 (74%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+A+A+E++ ++ LASRLG+W +K E+EDL F QP +R++
Sbjct: 189 QALARESMQVFAPLASRLGIWQIKWEIEDLAFRFQQPDEYRRI 231
>gi|377577314|ref|ZP_09806297.1| GTP pyrophosphokinase [Escherichia hermannii NBRC 105704]
gi|377541842|dbj|GAB51462.1| GTP pyrophosphokinase [Escherichia hermannii NBRC 105704]
Length = 742
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIV---------AERLQDCYASLG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH L+ + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTLFRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
>gi|30143060|gb|AAP15447.1| RelA/SpoT [Staphylococcus aureus subsp. aureus]
Length = 438
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKE----------TGNKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>gi|359397196|ref|ZP_09190246.1| GTP pyrophosphokinase [Halomonas boliviensis LC1]
gi|357968990|gb|EHJ91439.1| GTP pyrophosphokinase [Halomonas boliviensis LC1]
Length = 758
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 9/119 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K +YSI+ KM+RK + +V+D RA+R++V P + CY++L I+H
Sbjct: 259 VDGRAKHIYSIWRKMKRKRIDFSQVHDVRAVRILV---------PEVADCYTVLGIIHSR 309
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYK 299
W + EFDDYI NPK +GYQSLHTAV GP+ LE+QIRT MH+ AE G+ AHW YK
Sbjct: 310 WHHVPNEFDDYIANPKKNGYQSLHTAVMGPENKVLEIQIRTFAMHDEAELGVCAHWRYK 368
>gi|416384945|ref|ZP_11684705.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Crocosphaera watsonii WH 0003]
gi|357264961|gb|EHJ13781.1| GTP pyrophosphokinase , (p)ppGpp synthetase II /
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
[Crocosphaera watsonii WH 0003]
Length = 744
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 165 KELLISTSYIPGMEVT-LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 223
K+LL G++V L R K LY I+ KM+R++ G H++YD ALR++V
Sbjct: 233 KKLLSKRLDTMGIQVEELQGRPKHLYGIYCKMQRQNKGFHEIYDLAALRIIVKTN----- 287
Query: 224 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 283
+ CY L +VH L+ P+ G F DYI PKP+ YQSLHT V G +G LE+QIRT +
Sbjct: 288 ----EECYRSLAVVHDLFKPMPGRFKDYIGLPKPNLYQSLHTTVVGLNGRPLEIQIRTLE 343
Query: 284 MHEYAEHGLAAHWLYKETG 302
MH AE+G+AAHW YKETG
Sbjct: 344 MHHIAEYGIAAHWKYKETG 362
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ET I+ LA+RLG+W +K ELEDL F L+ + +RK++ +
Sbjct: 166 LRPDKQRRIALETKEIFAPLANRLGIWRVKWELEDLSFKYLESEDYRKIQN-----FVSE 220
Query: 69 NRVGYSRRITTI 80
R+ RI T+
Sbjct: 221 KRIDRETRIETV 232
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
K LR +L W+ L+ + + D++ +V + PNG+++ L G+T
Sbjct: 375 KFTWLRQLLDWQNDLKDDQEY--------VDNLKDNLFDDDVYVFT-PNGDVIALARGAT 425
Query: 560 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
A D A + VG + K +NG+ + + L++GDIVE+
Sbjct: 426 AVDFAYRIHTEVGNQMKGARINGRWSVLDQPLQNGDIVEI 465
>gi|407010993|gb|EKE25735.1| hypothetical protein ACD_5C00050G0005 [uncultured bacterium]
Length = 498
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 85/130 (65%), Gaps = 10/130 (7%)
Query: 176 GMEV-TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 234
G++V + R KS+YS++ K+++ D+ I++VYD A+R++V + + CY L
Sbjct: 232 GIDVLEIHGRAKSIYSLYLKLQKHDMDINRVYDLSAVRILVNE---------VADCYETL 282
Query: 235 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAA 294
+VH+ + P+ G DYI PKP+GYQS+HT V GPDG +EVQIRT KMH AE G+AA
Sbjct: 283 GVVHKKYRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKIMEVQIRTLKMHNEAEFGIAA 342
Query: 295 HWLYKETGNK 304
HWLY E K
Sbjct: 343 HWLYSERKKK 352
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
PP K +A+ET+ ++ +A+RLG+ +K +L+DL F L P + +++
Sbjct: 155 PPEKQIRIARETMEVFAPIANRLGMGEIKTQLQDLAFQYLDPVNYERVK 203
>gi|67921546|ref|ZP_00515064.1| RelA/SpoT protein [Crocosphaera watsonii WH 8501]
gi|67856658|gb|EAM51899.1| RelA/SpoT protein [Crocosphaera watsonii WH 8501]
Length = 744
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 87/139 (62%), Gaps = 10/139 (7%)
Query: 165 KELLISTSYIPGMEVT-LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLH 223
K+LL G++V L R K LY I+ KM+R++ G H++YD ALR++V
Sbjct: 233 KKLLSKRLDTMGIQVEELQGRPKHLYGIYCKMQRQNKGFHEIYDLAALRIIVKTN----- 287
Query: 224 GPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQK 283
+ CY L +VH L+ P+ G F DYI PKP+ YQSLHT V G +G LE+QIRT +
Sbjct: 288 ----EECYRSLAVVHDLFKPMPGRFKDYIGLPKPNLYQSLHTTVVGLNGRPLEIQIRTLE 343
Query: 284 MHEYAEHGLAAHWLYKETG 302
MH AE+G+AAHW YKETG
Sbjct: 344 MHHIAEYGIAAHWKYKETG 362
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P K R +A ET I+ LA+RLG+W +K ELEDL F L+ + +RK++ +
Sbjct: 166 LRPDKQRRIALETKEIFAPLANRLGIWRVKWELEDLSFKYLESEDYRKIQN-----FVSE 220
Query: 69 NRVGYSRRITTI 80
R+ RI T+
Sbjct: 221 KRIDRETRIETV 232
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGST 559
K LR +L W+ L+ + + D++ +V + PNG+++ L G+T
Sbjct: 375 KFTWLRQLLDWQNDLKDDQEY--------VDNLKDNLFDDDVYVFT-PNGDVIALARGAT 425
Query: 560 AADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
A D A + VG + K +NG+ + + L++GDIVE+
Sbjct: 426 AVDFAYRIHTEVGNQMKGARINGRWSVLDQPLQNGDIVEI 465
>gi|403379224|ref|ZP_10921281.1| (p)ppGpp synthetase I SpoT/RelA [Paenibacillus sp. JC66]
Length = 725
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E +S R K +YSI+ KM + +++YD A+RV+V + I+ CY+ L
Sbjct: 227 GIESDISGRPKHIYSIYKKMTARGKQFNEIYDLLAIRVIVDN---------IKDCYATLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H LW P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH +E+G+AAH
Sbjct: 278 IIHTLWKPMPGRFKDYIAMPKTNMYQSLHTTVIGPKGEPLEVQIRTWEMHRTSEYGIAAH 337
Query: 296 WLYKETGNKLQSISSMDESD 315
W YKE G+ + S S M++ +
Sbjct: 338 WAYKE-GSAVPSGSFMEKMN 356
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
R +A ETL I+C +A RLG+ A+K E+ED+ L PQ + ++
Sbjct: 155 RRIADETLEIFCPIAHRLGISAIKWEMEDIALRYLNPQKYYRI 197
>gi|237667442|ref|ZP_04527426.1| RelA/SpoT family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|237655790|gb|EEP53346.1| RelA/SpoT family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 737
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM K+ I +++D A+RV+V +++ CY +L
Sbjct: 229 GIDSDIDGRPKHFYSIYKKMVNKNKSIEEIFDLTAIRVLVN---------SVKDCYGVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 296 WLYKE 300
W YKE
Sbjct: 340 WKYKE 344
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
+P K + A+ETL I+ LA RLG+ +K ELEDLCF L + + + D+A
Sbjct: 151 MPANKQKNKAKETLDIYAPLAHRLGMSKIKWELEDLCFRYLHEKEYYDLVKDIA 204
>gi|83590516|ref|YP_430525.1| (p)ppGpp synthetase SpoT/RelA [Moorella thermoacetica ATCC 39073]
gi|83573430|gb|ABC19982.1| (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [Moorella
thermoacetica ATCC 39073]
Length = 717
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 82/127 (64%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI++KM ++ + ++YD A+RV+V ++ CY++L
Sbjct: 227 GIKADIQGRPKHFYSIYNKMVKQGKELSEIYDLIAVRVIVD---------TVKECYAVLG 277
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W PI G F DY+ PKP+ YQSLHT V GP+G E+QIRT +MH AE+G+AAH
Sbjct: 278 VVHAIWKPIPGRFKDYVAMPKPNMYQSLHTTVIGPNGDPFEIQIRTWEMHRTAEYGIAAH 337
Query: 296 WLYKETG 302
W YKE G
Sbjct: 338 WRYKEGG 344
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRN 69
PP K + +A+ETL I+ LA RLG++ LK ELED L+P+ + ++ + R
Sbjct: 150 PPEKQQEIARETLEIFAPLAHRLGIFRLKWELEDQSLRYLEPERYYELVNSIN--MKRRE 207
Query: 70 RVGYSRRITTIVSSPPLDE 88
R Y R++ I+ LDE
Sbjct: 208 REEYIRQVVDILRQ-KLDE 225
>gi|329769877|ref|ZP_08261276.1| hypothetical protein HMPREF0433_01040 [Gemella sanguinis M325]
gi|328837931|gb|EGF87555.1| hypothetical protein HMPREF0433_01040 [Gemella sanguinis M325]
Length = 725
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 21/159 (13%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ ++ R K +YSI+ KM +++ ++YD A+RV+V ++ CY+ L
Sbjct: 233 NIKAQVNGRPKHIYSIYKKMVKQNKTFDQIYDLLAVRVLVD---------SVADCYATLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+V+ LW+PI G DYI PKP+ YQSLHT V PDG LEVQIRT +MHE AE G+AAH
Sbjct: 284 LVNNLWVPIPGRIKDYIAMPKPNMYQSLHTTVIAPDGQTLEVQIRTYEMHEIAEKGIAAH 343
Query: 296 WLYKETG------------NKLQSISSMDESDIEASSSL 322
W YKE N Q I+ DE++ A S +
Sbjct: 344 WAYKEGKKVNKDNNFYEKLNWFQKIAENDETEATAESFM 382
>gi|330828387|ref|YP_004391339.1| GTP pyrophosphokinase [Aeromonas veronii B565]
gi|406678407|ref|ZP_11085583.1| RelA/SpoT family protein [Aeromonas veronii AMC35]
gi|423201078|ref|ZP_17187658.1| RelA/SpoT family protein [Aeromonas veronii AER39]
gi|423205367|ref|ZP_17191923.1| RelA/SpoT family protein [Aeromonas veronii AMC34]
gi|423210925|ref|ZP_17197478.1| RelA/SpoT family protein [Aeromonas veronii AER397]
gi|328803523|gb|AEB48722.1| GTP pyrophosphokinase [Aeromonas veronii B565]
gi|404614320|gb|EKB11321.1| RelA/SpoT family protein [Aeromonas veronii AER397]
gi|404618061|gb|EKB14982.1| RelA/SpoT family protein [Aeromonas veronii AER39]
gi|404622488|gb|EKB19351.1| RelA/SpoT family protein [Aeromonas veronii AMC35]
gi|404624162|gb|EKB21002.1| RelA/SpoT family protein [Aeromonas veronii AMC34]
Length = 737
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K + ++++D RA+RVV +Q CY+ L
Sbjct: 240 GVDAEVYGRPKHIYSIWRKMQKKHLEFNELFDVRAVRVVT---------KRLQDCYAALG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + I EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT +MH+ AE G+AAH
Sbjct: 291 IVHTQFHHIPREFDDYVANPKPNGYQSIHTVVVGPEGKTVEIQIRTDQMHQDAELGVAAH 350
Query: 296 WLYKE 300
W YKE
Sbjct: 351 WRYKE 355
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
+AQE I+ LA+RLG+ LK ELEDL F L P ++++ L R R
Sbjct: 170 MAQEITNIYAPLANRLGIGQLKWELEDLAFRYLHPDTYKQIAKQLDEKRLDRER 223
>gi|325294217|ref|YP_004280731.1| (p)ppGpp synthetase I SpoT/RelA [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064665|gb|ADY72672.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 716
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 9/130 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R+K +Y I+ KM K + +VYD +RV+ + CY +L
Sbjct: 228 GLKGDIQWRVKHIYGIYRKMVTKGIPFEEVYDVAGIRVITD---------TVGACYQILG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H +WIP+ G DYI PKP+ YQSLHT V GP G +E QIRT +MH+ AE G+AAH
Sbjct: 279 IIHSIWIPVPGRIKDYIATPKPNMYQSLHTTVVGPKGQFIEFQIRTYEMHQVAEMGIAAH 338
Query: 296 WLYKETGNKL 305
W YKE G L
Sbjct: 339 WKYKEGGGAL 348
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
++ P + A+ETL I+ LA+RLG++ +K ELEDL L P+ + ++
Sbjct: 149 SMKPESQKRNAKETLTIYAPLANRLGMYRIKNELEDLSLKYLDPETYNEL 198
>gi|310658609|ref|YP_003936330.1| GTP pyrophosphokinase [[Clostridium] sticklandii]
gi|308825387|emb|CBH21425.1| GTP pyrophosphokinase [[Clostridium] sticklandii]
Length = 729
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 16/168 (9%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E + R K YSI+ KM+ + ++YD A+R++V +++ CY ++
Sbjct: 226 NIEGDIKGRAKHFYSIYRKMKYQSKSFEEIYDLMAVRILV---------DSLKDCYGVVG 276
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH +W P+ G F DYI PKP+ YQSLHT V GPDG LE+QIRT++MH AE G+AAH
Sbjct: 277 IVHTIWKPMPGRFKDYIAMPKPNMYQSLHTTVLGPDGEPLEIQIRTKEMHRTAEFGIAAH 336
Query: 296 WLYKETGNKLQSISSMDE------SDIEASSSLSKDTDDHNPLDTDLF 337
W YKE G + S MD+ +E +S T+ L DLF
Sbjct: 337 WKYKE-GKIDPNESDMDKKLSWLRQMMEWQKDVSDPTEFMESLKIDLF 383
>gi|425064569|ref|ZP_18467694.1| GTP pyrophosphokinase [Pasteurella multocida subsp. gallicida X73]
gi|404380755|gb|EJZ77244.1| GTP pyrophosphokinase [Pasteurella multocida subsp. gallicida X73]
Length = 739
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
+V + R K +YSI+ KM++K + +YD RA+R++V P +Q CY+ L IV
Sbjct: 245 KVEVYGRPKHIYSIWRKMQKKHLEFSDLYDVRAVRIIV---------PKLQDCYTALGIV 295
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H + I EFDDY+ NPKP+GYQS+HT V G G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 296 HTHFKHIPKEFDDYVANPKPNGYQSIHTVVLGKGGKPVEVQIRTQQMHDDAELGVAAHWK 355
Query: 298 YKE 300
YKE
Sbjct: 356 YKE 358
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P+ +R +
Sbjct: 174 AKECANIYAPLANRLGIGQLKWELEDYCFRYLHPEQYRSI 213
>gi|408374667|ref|ZP_11172351.1| GTP pyrophosphokinase [Alcanivorax hongdengensis A-11-3]
gi|407765475|gb|EKF73928.1| GTP pyrophosphokinase [Alcanivorax hongdengensis A-11-3]
Length = 746
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 84/131 (64%), Gaps = 11/131 (8%)
Query: 174 IPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSL 233
I G EV R K +YSI+ KM++K + +VYD RA+R++V P ++ CY+
Sbjct: 255 IHGAEV--HGRAKHIYSIWRKMQKKHLEFGEVYDVRAVRILV---------PEVRDCYAA 303
Query: 234 LDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLA 293
L IVH LW + EFDDYI +PK +GY+SLHTAV GP+ LEVQIRT MHE AE G+
Sbjct: 304 LGIVHSLWKHVPKEFDDYIASPKENGYRSLHTAVVGPERKMLEVQIRTFDMHEEAELGVC 363
Query: 294 AHWLYKETGNK 304
AHW YKE K
Sbjct: 364 AHWRYKEGSKK 374
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 11 PAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
P + R VAQE I+ LA RLG+ LK ELEDL F LQP ++K+
Sbjct: 178 PERQRKVAQEIFDIYAPLAHRLGVGQLKWELEDLSFRYLQPGAYKKI 224
>gi|421264630|ref|ZP_15715597.1| RelA [Pasteurella multocida subsp. multocida str. P52VAC]
gi|401687901|gb|EJS83591.1| RelA [Pasteurella multocida subsp. multocida str. P52VAC]
Length = 739
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
+V + R K +YSI+ KM++K + +YD RA+R++V P +Q CY+ L IV
Sbjct: 245 KVEVYGRPKHIYSIWRKMQKKHLEFSDLYDVRAVRIIV---------PKLQDCYTALGIV 295
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H + I EFDDY+ NPKP+GYQS+HT V G G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 296 HTHFKHIPKEFDDYVANPKPNGYQSIHTVVLGKGGKPVEVQIRTQQMHDDAELGVAAHWK 355
Query: 298 YKE 300
YKE
Sbjct: 356 YKE 358
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P+ +R +
Sbjct: 174 AKECANIYAPLANRLGIGQLKWELEDYCFRYLHPEQYRSI 213
>gi|303257516|ref|ZP_07343528.1| GTP diphosphokinase [Burkholderiales bacterium 1_1_47]
gi|331000219|ref|ZP_08323903.1| RelA/SpoT family protein [Parasutterella excrementihominis YIT
11859]
gi|302859486|gb|EFL82565.1| GTP diphosphokinase [Burkholderiales bacterium 1_1_47]
gi|329572385|gb|EGG54038.1| RelA/SpoT family protein [Parasutterella excrementihominis YIT
11859]
Length = 703
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 37/223 (16%)
Query: 120 LSDRRKRTKFLHDLAKSSEAQKKAKV--VQDAGIALTSLVACEEALEKELLISTSYIPGM 177
LS R + H +A + E ++ +V +Q+A + +L+A G+
Sbjct: 179 LSLRFTEPEVFHTIANNLEETREERVASIQEAVRRIQALLASR---------------GI 223
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
+ ++S R K +YSI+ KM +K++ +++D RA+R++V +++ CY L ++
Sbjct: 224 QASVSGRPKHIYSIWKKMCKKNLKFEQLFDVRAIRIIVD---------SVEKCYETLSLI 274
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
+ + EFDDYI PKP+GYQSLHT + G G LE+QIRT+ MHE+AE G+AAHW
Sbjct: 275 QESFEVLSKEFDDYIAKPKPNGYQSLHTVIVGSRGKPLEIQIRTRAMHEFAELGVAAHWR 334
Query: 298 YKETGNKLQSISSMD-----------ESDIEASSSLSKDTDDH 329
YKE + D +SD++A+ + D+H
Sbjct: 335 YKEGSKRKAGEHEEDRVAWLRQMLAWKSDVQAAPTPEAAKDEH 377
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 14 ARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADL 61
A+ ETL ++ LA+RLG+W +K ELEDL +P++F + +L
Sbjct: 149 AKEYGAETLALYAPLANRLGIWQMKWELEDLSLRFTEPEVFHTIANNL 196
>gi|343493981|ref|ZP_08732265.1| GTP pyrophosphokinase [Vibrio nigripulchritudo ATCC 27043]
gi|342825622|gb|EGU60099.1| GTP pyrophosphokinase [Vibrio nigripulchritudo ATCC 27043]
Length = 739
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 89/132 (67%), Gaps = 12/132 (9%)
Query: 169 ISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQ 228
+ TS+I +S R K +YSI+ KM++K + +++D RA+R++ DK +Q
Sbjct: 238 MKTSHI---NAEVSGRPKHIYSIWRKMQKKSLAFDELFDVRAVRII-ADK--------LQ 285
Query: 229 CCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYA 288
CY+ L +VH + + EFDDY+ NPKP+GYQS+HT + GP+G +E+QIRT++MHE +
Sbjct: 286 DCYAALGVVHTKYKHLPSEFDDYVANPKPNGYQSIHTVILGPEGKTIEIQIRTKQMHEDS 345
Query: 289 EHGLAAHWLYKE 300
E G+AAHW YKE
Sbjct: 346 ELGVAAHWKYKE 357
>gi|291618631|ref|YP_003521373.1| RelA [Pantoea ananatis LMG 20103]
gi|378765924|ref|YP_005194385.1| GTP pyrophosphokinase [Pantoea ananatis LMG 5342]
gi|386078183|ref|YP_005991708.1| GTP pyrophosphokinase RelA [Pantoea ananatis PA13]
gi|291153661|gb|ADD78245.1| RelA [Pantoea ananatis LMG 20103]
gi|354987364|gb|AER31488.1| GTP pyrophosphokinase RelA [Pantoea ananatis PA13]
gi|365185398|emb|CCF08348.1| GTP pyrophosphokinase [Pantoea ananatis LMG 5342]
Length = 743
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVRAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH L+ + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAH
Sbjct: 295 TVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E+ I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 175 AKESTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRI 214
>gi|189425343|ref|YP_001952520.1| (p)ppGpp synthetase I SpoT/RelA [Geobacter lovleyi SZ]
gi|189421602|gb|ACD96000.1| (p)ppGpp synthetase I, SpoT/RelA [Geobacter lovleyi SZ]
Length = 716
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 76/120 (63%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K LYSI+ KM ++ V ++YD ALR++V D I+ CY +L ++H
Sbjct: 233 VSGRSKHLYSIYRKMEKRKVDFEEIYDLTALRILVDD---------IKSCYEVLGLIHSS 283
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W PI G F DYI PK + YQSLHT V GP G +EVQIRT +MH AE G+AAHW YKE
Sbjct: 284 WRPIPGRFKDYIAMPKGNMYQSLHTTVIGPHGDRMEVQIRTHEMHRVAEAGIAAHWKYKE 343
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
P K R++++ET+ I+ +A RLG+ +K ELEDL F LQP ++
Sbjct: 151 PDTKQRSISRETMDIYAPIAHRLGISWIKTELEDLSFRYLQPDVY 195
>gi|23099479|ref|NP_692945.1| GTP pyrophosphokinase [Oceanobacillus iheyensis HTE831]
gi|22777708|dbj|BAC13980.1| GTP pyrophosphokinase (stringent response) [Oceanobacillus
iheyensis HTE831]
Length = 734
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 88/138 (63%), Gaps = 10/138 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E +S R K LYSI+ KM ++ +++YD A+R++V + I+ CY++L
Sbjct: 233 NIEAEMSGRPKHLYSIYQKMVKQKKQFNEIYDLLAVRILVEN---------IKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MH+ AE+G+AAH
Sbjct: 284 IIHTNWKPMPGRFKDYIAMPKQNLYQSLHTTVIGPKGDPLEVQIRTKEMHDIAEYGIAAH 343
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE G + SS +E
Sbjct: 344 WAYKE-GKTSREKSSFEE 360
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
L P K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LAPEKQRRISNETLEIFAPLAHRLGISTIKWELEDTALRYLNPQQYYRI 203
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 540 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
++V V P GE++ L SGS D A K+ E G + +NG++ + EL++GDIVEV
Sbjct: 392 DMVYVFTPKGEVIELPSGSIPLDFAFKIHTEIGNKTIGSKINGKMEPLDYELQNGDIVEV 451
>gi|378775075|ref|YP_005177318.1| GTP pyrophosphokinase [Pasteurella multocida 36950]
gi|383311098|ref|YP_005363908.1| GTP diphosphokinase [Pasteurella multocida subsp. multocida str.
HN06]
gi|386835088|ref|YP_006240405.1| GTP pyrophosphokinase [Pasteurella multocida subsp. multocida str.
3480]
gi|417852018|ref|ZP_12497664.1| RelA [Pasteurella multocida subsp. gallicida str. Anand1_poultry]
gi|417854757|ref|ZP_12500027.1| RelA [Pasteurella multocida subsp. multocida str. Anand1_goat]
gi|425066736|ref|ZP_18469856.1| GTP pyrophosphokinase [Pasteurella multocida subsp. gallicida
P1059]
gi|338217349|gb|EGP03231.1| RelA [Pasteurella multocida subsp. multocida str. Anand1_goat]
gi|338217919|gb|EGP03749.1| RelA [Pasteurella multocida subsp. gallicida str. Anand1_poultry]
gi|356597623|gb|AET16349.1| GTP pyrophosphokinase [Pasteurella multocida 36950]
gi|380872370|gb|AFF24737.1| GTP diphosphokinase [Pasteurella multocida subsp. multocida str.
HN06]
gi|385201791|gb|AFI46646.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Pasteurella
multocida subsp. multocida str. 3480]
gi|404381041|gb|EJZ77528.1| GTP pyrophosphokinase [Pasteurella multocida subsp. gallicida
P1059]
Length = 739
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
+V + R K +YSI+ KM++K + +YD RA+R++V P +Q CY+ L IV
Sbjct: 245 KVEVYGRPKHIYSIWRKMQKKHLEFSDLYDVRAVRIIV---------PKLQDCYTALGIV 295
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H + I EFDDY+ NPKP+GYQS+HT V G G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 296 HTHFKHIPKEFDDYVANPKPNGYQSIHTVVLGKGGKPVEVQIRTQQMHDDAELGVAAHWK 355
Query: 298 YKE 300
YKE
Sbjct: 356 YKE 358
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P+ +R +
Sbjct: 174 AKECANIYAPLANRLGIGQLKWELEDYCFRYLHPEQYRSI 213
>gi|386016932|ref|YP_005935228.1| GTP pyrophosphokinase RelA [Pantoea ananatis AJ13355]
gi|327395010|dbj|BAK12432.1| GTP pyrophosphokinase RelA [Pantoea ananatis AJ13355]
Length = 743
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KM++K + +++D RA+R+V +Q CY L
Sbjct: 244 GVRAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIV---------AERLQDCYGALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH L+ + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE AE G+AAH
Sbjct: 295 TVHTLYRHLPNEFDDYVANPKPNGYQSIHTVVLGPEGKTVEIQIRTRQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E+ I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 175 AKESTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRI 214
>gi|407003296|gb|EKE19893.1| hypothetical protein ACD_8C00092G0015 [uncultured bacterium]
Length = 496
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R KS+YS+F K+++ D+ I ++YD A+RV V + + CY L IVH+
Sbjct: 237 ISGRAKSVYSLFLKLQKHDMDISRIYDLAAVRVTVQE---------VADCYETLGIVHKK 287
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ P+ G DYI PKP+GYQS+HT V GPDG LEVQIRT KMH AE G+AAHW+Y E
Sbjct: 288 YRPMIGRIKDYISLPKPNGYQSIHTTVFGPDGKILEVQIRTIKMHNEAEFGIAAHWIYAE 347
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
PP K +A+ET+ ++ +A+RLG+ +K++L+DL F L P+ ++ ++
Sbjct: 154 PPEKQVRIARETMEVFAPIANRLGMGEMKSQLQDLSFKYLDPENYKTVK 202
>gi|255027490|ref|ZP_05299476.1| hypothetical protein LmonocytFSL_16123 [Listeria monocytogenes FSL
J2-003]
Length = 586
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 131 NIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 181
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 182 IIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 241
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 242 WAYKE-GKVVNSKTSFD 257
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 53 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 101
>gi|157693164|ref|YP_001487626.1| GTP diphosphokinase [Bacillus pumilus SAFR-032]
gi|157681922|gb|ABV63066.1| GTP diphosphokinase [Bacillus pumilus SAFR-032]
Length = 736
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKAEFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVD---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHEIAEYGIAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 345
W YKE +S S +E+ + S ++ + TD + SLK+
Sbjct: 344 WAYKEGK---ESAESTEEAVFQKKLSWFREILEFQNESTDAEEFMESLKI 390
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|15603730|ref|NP_246804.1| RelA protein [Pasteurella multocida subsp. multocida str. Pm70]
gi|12722293|gb|AAK03949.1| RelA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 739
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
+V + R K +YSI+ KM++K + +YD RA+R++V P +Q CY+ L IV
Sbjct: 245 KVDVYGRPKHIYSIWRKMQKKHLEFSDLYDVRAVRIIV---------PKLQDCYTALGIV 295
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H + I EFDDY+ NPKP+GYQS+HT V G G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 296 HTHFKHIPKEFDDYVANPKPNGYQSIHTVVLGKGGKPVEVQIRTQQMHDDAELGVAAHWK 355
Query: 298 YKE 300
YKE
Sbjct: 356 YKE 358
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P+ +R +
Sbjct: 174 AKECANIYAPLANRLGIGQLKWELEDYCFRYLHPEQYRSI 213
>gi|221633684|ref|YP_002522910.1| GTP pyrophosphokinase [Thermomicrobium roseum DSM 5159]
gi|221157017|gb|ACM06144.1| GTP pyrophosphokinase [Thermomicrobium roseum DSM 5159]
Length = 720
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ ++ R K + SI KMR K ++YD +RV+V ++ CY+ L
Sbjct: 231 GIRAVVTGREKHIASIARKMREKQRNFDEIYDVLGIRVIVDEQRD---------CYAALA 281
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H +W PI G+FDDYI NPK + Y+SLHTAV GP G LEVQIRT +MH AE+G+AAH
Sbjct: 282 IIHGMWHPIPGQFDDYIANPKENLYRSLHTAVIGPRGIPLEVQIRTHEMHREAEYGIAAH 341
Query: 296 WLYKE 300
W YKE
Sbjct: 342 WRYKE 346
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLAS 63
LPP K R +A+ET+ I+ LA+RLG+ LKAELEDL F L+PQ + + L S
Sbjct: 153 LPPEKQRRIARETMEIYAPLANRLGIGQLKAELEDLAFKYLEPQTYETIARALES 207
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 32/206 (15%)
Query: 394 QIKCWEAYARLYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQIT 453
Q C+ A A ++ W PG D K L R H R +P +QI
Sbjct: 273 QRDCYAALAIIHGM----WHPIPGQFDDYIANPKENLYRS--LHTAVIGPRGIPLEVQIR 326
Query: 454 HLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRTMLRWEEQ 513
E+EY ++A + R + + P S + SI K+ R +L W ++
Sbjct: 327 THEMHREAEYG--IAAHW-----------RYKEQLKPDSGDRSIEAKIAWFRQILEWRDE 373
Query: 514 LRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMK----VGL 569
L + ++P E++ V P G+++ L +G+T D A + VG
Sbjct: 374 LLDAQEF--------VDSVKQDLLP-EMIYVFTPKGDVVELPAGATPIDFAYRIHTEVGH 424
Query: 570 EGKLVLVNGQLVLPNTELKDGDIVEV 595
+ VNGQ+V N +L++G +V++
Sbjct: 425 QCVGAKVNGQIVPLNYKLQNGQVVQI 450
>gi|407980717|ref|ZP_11161494.1| GTP diphosphokinase [Bacillus sp. HYC-10]
gi|407412525|gb|EKF34317.1| GTP diphosphokinase [Bacillus sp. HYC-10]
Length = 736
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKAEFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVD---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHEIAEYGIAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 345
W YKE +S S +E+ + S ++ + TD + SLK+
Sbjct: 344 WAYKEGK---ESAESTEEAVFQKKLSWFREILEFQNESTDAEEFMESLKI 390
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|297568237|ref|YP_003689581.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfurivibrio alkaliphilus
AHT2]
gi|296924152|gb|ADH84962.1| (p)ppGpp synthetase I, SpoT/RelA [Desulfurivibrio alkaliphilus
AHT2]
Length = 735
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 78/118 (66%), Gaps = 9/118 (7%)
Query: 183 SRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242
R K LYSI K+ +++ I KVYD A R++VGD ++ CY L ++H LW
Sbjct: 251 GRPKHLYSIHKKLLVQNITIDKVYDKVAFRIIVGD---------VKECYQALGVIHSLWP 301
Query: 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
PIDG F D+I +PK +GYQS+HT+V GP+G +E+QIRT++M A G+AAHW YKE
Sbjct: 302 PIDGRFKDFISHPKANGYQSVHTSVIGPNGDFMEIQIRTEEMDRIAAEGIAAHWAYKE 359
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 15 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYS 74
R +AQET+ ++ LA RLG+ +K ELEDL F+ LQP+ +R + + + + S +R Y
Sbjct: 171 REIAQETMDLYAPLAGRLGIDWIKRELEDLAFSHLQPEAYRYLMSKIQT--SLPDREAYV 228
Query: 75 RRITTIVS 82
RI +++
Sbjct: 229 ERIKGLLT 236
>gi|330446948|ref|ZP_08310599.1| relA/SpoT family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491139|dbj|GAA05096.1| relA/SpoT family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 744
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 89/138 (64%), Gaps = 9/138 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 243 NIKAEVQGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------ADQLQDCYAALG 293
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH + + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAH
Sbjct: 294 VVHTKYRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAH 353
Query: 296 WLYKETGNKLQSISSMDE 313
W YKE + S+ DE
Sbjct: 354 WKYKEGTASGGAQSAYDE 371
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA AQE I+ LA+RLG+ LK E+ED F P ++++ L+
Sbjct: 166 PDEVRRAAAQECANIYAPLANRLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLS 218
>gi|116620408|ref|YP_822564.1| (p)ppGpp synthetase I SpoT/RelA [Candidatus Solibacter usitatus
Ellin6076]
gi|116223570|gb|ABJ82279.1| (p)ppGpp synthetase I, SpoT/RelA [Candidatus Solibacter usitatus
Ellin6076]
Length = 742
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R+K YS+F KMRR+ + + +VYD ALR++ +++ CY+ L
Sbjct: 249 GIPARIDGRVKRPYSVFQKMRRQKISLDQVYDLMALRILTD---------SVKNCYAALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H W PI G D+I P+P+ YQSLHT+V GP G EVQIRT++MH AE G+AAH
Sbjct: 300 VIHNKWRPIPGRIKDFIAIPRPNLYQSLHTSVVGPHGQTFEVQIRTEEMHRIAEEGIAAH 359
Query: 296 WLYKE 300
W YKE
Sbjct: 360 WKYKE 364
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P + +A+ET+ I+ +A RLG+ ++ ELEDL F L+P ++++ L+++ S R
Sbjct: 171 LNPERRERIARETIEIYAPIAHRLGMGKVRGELEDLAFQHLEPDAYQEI---LSAIESKR 227
Query: 69 N 69
+
Sbjct: 228 H 228
>gi|392972298|ref|ZP_10337690.1| GTP pyrophosphokinase [Staphylococcus equorum subsp. equorum Mu2]
gi|403046373|ref|ZP_10901844.1| GTP pyrophosphokinase [Staphylococcus sp. OJ82]
gi|392510011|emb|CCI60993.1| GTP pyrophosphokinase [Staphylococcus equorum subsp. equorum Mu2]
gi|402763873|gb|EJX17964.1| GTP pyrophosphokinase [Staphylococcus sp. OJ82]
Length = 729
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 79/120 (65%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V +I CY++L +VH L
Sbjct: 238 INGRPKHIYSIYRKMVKQKKQFDQIFDLLAVRIIVN---------SINDCYAVLGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTSEMHEIAEHGVAAHWAYKE 348
>gi|89100794|ref|ZP_01173647.1| GTP pyrophosphokinase [Bacillus sp. NRRL B-14911]
gi|89084497|gb|EAR63645.1| GTP pyrophosphokinase [Bacillus sp. NRRL B-14911]
Length = 731
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
LS R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L I+H
Sbjct: 238 LSGRPKHIYSIYRKMALQNKQFNEIYDLLAVRIVVN---------SIKDCYAVLGIIHTC 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP G LEVQIRT +MH+ AE G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANMYQSLHTTVIGPKGDPLEVQIRTTEMHQIAEFGIAAHWAYKE 348
Query: 301 TGNKLQSISSMDE 313
G + SS +E
Sbjct: 349 -GKTVNEGSSFEE 360
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPAEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
>gi|359412257|ref|ZP_09204722.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium sp. DL-VIII]
gi|357171141|gb|EHI99315.1| (p)ppGpp synthetase I, SpoT/RelA [Clostridium sp. DL-VIII]
Length = 736
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K YSI+ KM K+ I +++D A+RV+V +++ CY +L
Sbjct: 229 GIQSDIDGRPKHFYSIYKKMVSKNKSIEQIFDLTAIRVLVN---------SVKDCYGVLG 279
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH ++ PI G F DYI PKP+ YQSLHT V GP G E+QIRT +MH+ AE+G+AAH
Sbjct: 280 IVHTIYRPIPGRFKDYIAMPKPNMYQSLHTTVIGPQGKTFEIQIRTFEMHKTAEYGIAAH 339
Query: 296 WLYKE 300
W YKE
Sbjct: 340 WKYKE 344
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
+P K + A+ETL I+ LA RLG+ +K ELEDLCF L + + ++ +A
Sbjct: 151 MPEKKQKNKAKETLDIYAPLAHRLGMSKIKWELEDLCFRYLHEKEYYELVDSIAE----- 205
Query: 69 NRVGYSRRITTIVS 82
RV I IVS
Sbjct: 206 KRVERETYIKDIVS 219
>gi|315303282|ref|ZP_07873919.1| GTP diphosphokinase [Listeria ivanovii FSL F6-596]
gi|313628349|gb|EFR96845.1| GTP diphosphokinase [Listeria ivanovii FSL F6-596]
Length = 738
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +S R K +YSI+ KM ++ +++YD A+R+VV +I+ CY++L
Sbjct: 233 NIQADISGRPKHIYSIYRKMTEQNKQFNEIYDLLAVRIVVS---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DY+ PK + YQS+HT V GP G LEVQIRT +MH+ AE+G+AAH
Sbjct: 284 IIHTRWKPMPGRFKDYVAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQIAEYGVAAH 343
Query: 296 WLYKETGNKLQSISSMD 312
W YKE G + S +S D
Sbjct: 344 WAYKE-GKVVNSKTSFD 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPVEKQRRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRI 203
>gi|152976825|ref|YP_001376342.1| (p)ppGpp synthetase I SpoT/RelA [Bacillus cytotoxicus NVH 391-98]
gi|152025577|gb|ABS23347.1| (p)ppGpp synthetase I, SpoT/RelA [Bacillus cytotoxicus NVH 391-98]
Length = 727
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 80/120 (66%), Gaps = 9/120 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+S R K +YSI+ KM ++ +++YD A+RVVV +I+ CY++L I+H
Sbjct: 238 ISGRPKHIYSIYRKMALQNKQFNEIYDLLAVRVVVN---------SIKDCYAVLGIIHTC 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP G LEVQIRT++MHE AE+G+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKANLYQSLHTTVIGPKGDPLEVQIRTKEMHEIAEYGIAAHWAYKE 348
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R +A ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRIANETLEIFAPLAHRLGINTIKWELEDTSLRYLNPQQYYRI 203
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 540 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
++V V P G++M L GS D A +V E G + VNG++V + +LK GDI+E+
Sbjct: 391 DMVFVFTPKGDVMELPMGSVPIDFAYRVHSEIGNKTIGAKVNGKMVTLDYKLKTGDIIEI 450
>gi|194017102|ref|ZP_03055714.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Bacillus pumilus
ATCC 7061]
gi|194010970|gb|EDW20540.1| GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp
synthetase I) ((P)ppGpp synthetase) [Bacillus pumilus
ATCC 7061]
Length = 736
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKAEFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVD---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTVEMHEIAEYGIAAH 343
Query: 296 WLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYSSLKM 345
W YKE +S S +E+ + S ++ + TD + SLK+
Sbjct: 344 WAYKEGK---ESAESTEEAVFQKKLSWFREILEFQNESTDAEEFMESLKI 390
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,081,380,193
Number of Sequences: 23463169
Number of extensions: 374178697
Number of successful extensions: 971857
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5060
Number of HSP's successfully gapped in prelim test: 755
Number of HSP's that attempted gapping in prelim test: 950017
Number of HSP's gapped (non-prelim): 16503
length of query: 597
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 449
effective length of database: 8,886,646,355
effective search space: 3990104213395
effective search space used: 3990104213395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)