BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007593
(597 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA
PE=3 SV=1
Length = 736
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL-QPQIFR 55
A+P K +++ETL I+ LA RLG+ +K ELED + Q FR
Sbjct: 161 AMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFR 209
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1
Length = 736
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL-QPQIFR 55
A+P K +++ETL I+ LA RLG+ +K ELED + Q FR
Sbjct: 161 AMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFR 209
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476)
GN=relA PE=3 SV=1
Length = 736
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL-QPQIFR 55
A+P K +++ETL I+ LA RLG+ +K ELED + Q FR
Sbjct: 161 AMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFR 209
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315)
GN=relA PE=1 SV=2
Length = 736
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL-QPQIFR 55
A+P K +++ETL I+ LA RLG+ +K ELED + Q FR
Sbjct: 161 AMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFR 209
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252)
GN=relA PE=3 SV=1
Length = 736
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL-QPQIFR 55
A+P K +++ETL I+ LA RLG+ +K ELED + Q FR
Sbjct: 161 AMPREKQIRISRETLEIYAPLAHRLGINTIKWELEDTALRYIDNVQYFR 209
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=relA PE=3 SV=2
Length = 736
Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
+E ++ R K +YSI+ KM ++ +++D A+RV+V +I CY++L
Sbjct: 240 NIEGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAIRVIVN---------SINDCYAILG 290
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH LW P+ G F DYI PK + YQSLHT V GP+G LE+QIRT MHE AEHG+AAH
Sbjct: 291 LVHTLWKPMPGRFKDYIAMPKQNLYQSLHTTVVGPNGDPLEIQIRTFDMHEIAEHGVAAH 350
Query: 296 WLYKETG----------NKLQSISSMDESDIEASSS 321
W YKE NKL + + E+D +S +
Sbjct: 351 WAYKEGKKVSEKDQTYQNKLNWLKELAEADHTSSDA 386
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=relA PE=3 SV=1
Length = 729
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 19/145 (13%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V +I CY+ L +VH L
Sbjct: 238 INGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVN---------SINDCYATLGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 301 TG----------NKLQSISSMDESD 315
NKL + + E+D
Sbjct: 349 GKTVNQKTQDFQNKLNWLKELAETD 373
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QIFR 55
A+P K +++ETL I+ LA RLG+ +K ELED + Q FR
Sbjct: 154 AMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQYFR 202
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=relA PE=3 SV=1
Length = 729
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 19/145 (13%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R K +YSI+ KM ++ +++D A+R++V +I CY+ L +VH L
Sbjct: 238 INGRPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVN---------SINDCYATLGLVHTL 288
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
W P+ G F DYI PK + YQSLHT V GP+G LE+QIRT +MHE AEHG+AAHW YKE
Sbjct: 289 WKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKE 348
Query: 301 TG----------NKLQSISSMDESD 315
NKL + + E+D
Sbjct: 349 GKTVNQKTQDFQNKLNWLKELAETD 373
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQP-QIFR 55
A+P K +++ETL I+ LA RLG+ +K ELED + Q FR
Sbjct: 154 AMPREKQVRISKETLEIYAPLAHRLGINTIKWELEDTALRYIDSVQYFR 202
>sp|P0AG23|RELA_SHIFL GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1
Length = 744
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG20|RELA_ECOLI GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=1
SV=1
Length = 744
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG21|RELA_ECOL6 GTP pyrophosphokinase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=relA PE=3 SV=1
Length = 744
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|P0AG22|RELA_ECO57 GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1
Length = 744
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ + R K +YSI+ KM++K++ +++D RA+R+V +Q CY+ L
Sbjct: 244 GVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIV---------AERLQDCYAALG 294
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
IVH + + EFDDY+ NPKP+GYQS+HT V GP G +E+QIRT++MHE AE G+AAH
Sbjct: 295 IVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAH 354
Query: 296 WLYKE 300
W YKE
Sbjct: 355 WKYKE 359
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
A+E I+ LA+RLG+ LK ELED CF L P ++++
Sbjct: 175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRI 214
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA
PE=3 SV=3
Length = 734
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ S R K +YSI+ KM ++ +++YD A+R++V +I+ CY++L
Sbjct: 233 NIKADFSGRPKHIYSIYRKMVLQNKQFNEIYDLLAVRILVN---------SIKDCYAVLG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H W P+ G F DYI PKP+ YQSLHT V GP G LEVQIRT +MHE AE+G+AAH
Sbjct: 284 IIHTCWKPMPGRFKDYIAMPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAH 343
Query: 296 WLYKE 300
W YKE
Sbjct: 344 WAYKE 348
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LP K R ++ ETL I+ LA RLG+ +K ELED L PQ + ++
Sbjct: 155 LPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYYRI 203
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 540 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
++V V P G+++ L SGS D + ++ E G + VNG++V + +L+ GDIVE+
Sbjct: 392 DMVYVFTPKGDVIELPSGSVPIDFSYRIHSEIGNKTIGAKVNGKMVTLDHKLRTGDIVEI 451
>sp|P55133|RELA_PHOAS GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG
15956) GN=relA PE=3 SV=1
Length = 744
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 87/133 (65%), Gaps = 9/133 (6%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
+ R K +YSI+ KM++K + +++D RA+R+V + +Q CY+ L +VH
Sbjct: 248 VQGRPKHIYSIWRKMQKKSLEFDELFDVRAVRIVAEE---------LQDCYAALGVVHTK 298
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ + EFDDY+ NPKP+GYQS+HT V GP+G +E+QIRT++MHE +E G+AAHW YKE
Sbjct: 299 YRHLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGVAAHWKYKE 358
Query: 301 TGNKLQSISSMDE 313
+ S+ DE
Sbjct: 359 GTASGGAQSAYDE 371
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 10 PPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLA 62
P RA AQE I+ LA+RLG+ LK E+ED F P ++++ L+
Sbjct: 166 PDEVRRAAAQECANIYAPLANRLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLS 218
>sp|P44644|RELA_HAEIN GTP pyrophosphokinase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=relA PE=3 SV=1
Length = 743
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 11/136 (8%)
Query: 178 EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237
+V + R K +YSI+ KM++K + +YD RA+R++V +Q CY+ L IV
Sbjct: 248 QVEVYGRPKHIYSIWRKMQKKHLEFSGLYDVRAVRIIV---------QKLQDCYTALGIV 298
Query: 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWL 297
H + + EFDDY+ NPKP+GYQS+HT V G G +EVQIRTQ+MH+ AE G+AAHW
Sbjct: 299 HTQFKHLPKEFDDYVANPKPNGYQSIHTVVLGKGGKPIEVQIRTQQMHDDAELGMAAHWK 358
Query: 298 YKETGNKLQSISSMDE 313
YKE GN S+S+ +E
Sbjct: 359 YKE-GNT-GSMSAYEE 372
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 19 QETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
+E I+ LA+RLG+ LK ELED CF L P+ +R +
Sbjct: 178 KECSYIYAPLANRLGIGQLKWELEDYCFRYLHPEQYRAI 216
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT
PE=3 SV=1
Length = 760
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 10/134 (7%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
L R K LY I+ KM +D ++YD ALR++V K CY L +VH +
Sbjct: 265 LQGRPKHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKGE---------CYRALSVVHDV 315
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300
+ PI G F DYI PKP+ YQSLHT V G LE+QIRT++MH AE+G+AAHW YKE
Sbjct: 316 FKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVAEYGIAAHWKYKE 375
Query: 301 T-GNKLQSISSMDE 313
+ G++ +++S DE
Sbjct: 376 SGGSENATLTSTDE 389
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRA 59
AL P K R +A+ET I+ LA+RLG+W K ELEDL F L+P +RK+++
Sbjct: 180 ALSPEKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSYRKIQS 231
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 495 ASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRL 554
S + K LR +L W+ L+ ++ K N D V V P GE++ L
Sbjct: 385 TSTDEKFTWLRQLLDWQSDLKDAQEYVENL---KQNLFDDDVY------VFTPKGEVISL 435
Query: 555 RSGSTAADAAMK----VGLEGKLVLVNGQLVLPNTELKDGDIVEV 595
G+T D A + VG K VNGQ + +T LK+GDIVE+
Sbjct: 436 ARGATPVDFAYRIHTEVGHHMKGARVNGQWLGVDTRLKNGDIVEI 480
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ +S R K +YSI+ K++ + + +++D A R++ P CY L
Sbjct: 249 GLKGEVSGRFKHVYSIYKKIKSQGIDFDQIHDIIAFRII---------APTAPSCYEALG 299
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+VH +W P+ G F D+I PKP+ YQSLHT + GP +EVQIRT +MH+ AE G+AAH
Sbjct: 300 LVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSERVEVQIRTSEMHKIAEEGIAAH 359
Query: 296 WLYKE 300
W YKE
Sbjct: 360 WKYKE 364
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNR 70
K +AQETL I+ LA+RLG+ +K ELEDL F ++PQ F ++A L R +
Sbjct: 175 KQARIAQETLDIYAPLANRLGISWIKTELEDLSFRYVKPQEFFALQAKLNKRKKEREK 232
>sp|O51216|SPOT_BORBU Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=spoT PE=3 SV=1
Length = 667
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 15/140 (10%)
Query: 162 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGT 221
++EKEL S G+E ++ R K YSIF KM+ + + +++D +R++ +
Sbjct: 236 SIEKELQKS-----GIEAEITVRSKHFYSIFRKMQTRTNKLTQIFDTLGIRIICKKQ--- 287
Query: 222 LHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-DGSALEVQIR 280
+ CY +L+IVHR+W PI G DYI +PK + YQSLHT V+ P D +E+QIR
Sbjct: 288 ------KECYEILEIVHRVWKPIPGRLKDYIASPKENKYQSLHTTVRIPEDNQLIEIQIR 341
Query: 281 TQKMHEYAEHGLAAHWLYKE 300
T++M A +G+AAHW+YKE
Sbjct: 342 TEEMDRIANYGVAAHWIYKE 361
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LP + +A++ L + +A RLG+ +LK LEDL F L P+ +++++ L+ R
Sbjct: 167 LPKNRQDRIAKDCLSTYVPIAERLGISSLKTYLEDLSFKHLYPKDYKEIKNFLSETKIER 226
Query: 69 NRVGYSRRIT 78
+ Y +++
Sbjct: 227 EKKLYKGKLS 236
>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex
aeolicus (strain VF5) GN=spoT PE=3 SV=1
Length = 696
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+E + R K YSI+ K RRK + + V+D +R++V + CY++L
Sbjct: 230 GIEAEIKYRSKHYYSIWEKTRRKGIRLEDVHDILGVRIIVN---------TVPECYTVLG 280
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
I+H L+ P+ G+F DYI PKP+ YQSLHT V G +E QIRT +MHE AE G+A+H
Sbjct: 281 IIHSLFRPVPGKFKDYISLPKPNLYQSLHTTVIADKGKLVEFQIRTWEMHERAEKGIASH 340
Query: 296 WLYKETGN 303
W YKE N
Sbjct: 341 WAYKEGKN 348
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
K + +A+ET+ I+ LA RLG+W++K ELED F L P+ + K+R
Sbjct: 155 KRKKIAKETMEIYAPLAHRLGVWSIKNELEDWAFKYLYPEEYEKVR 200
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 528 KANGNPDSVVPG-------EVVIVCWPNGEIMRLRSGSTAADAAMK----VGLEGKLVLV 576
+ + NP V+ E V V P G+++ L GST D A K VG
Sbjct: 366 QGSTNPSEVLENLKSNLFFEEVFVFTPKGDLVVLPKGSTPVDLAYKIHTEVGNHCAGAKS 425
Query: 577 NGQLVLPNTELKDGDIVEV 595
NG++V N ELK GD+VE+
Sbjct: 426 NGRIVPLNYELKSGDVVEI 444
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Shigella flexneri GN=spoT PE=3 SV=1
Length = 702
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 296 WLYKETG 302
W YKE G
Sbjct: 339 WAYKEHG 345
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+L P K R +A+ETL I+ LA RLG+ +K ELE+L F L P +R ++
Sbjct: 149 SLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIK 199
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli
(strain K12) GN=spoT PE=1 SV=1
Length = 702
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 296 WLYKETG 302
W YKE G
Sbjct: 339 WAYKEHG 345
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+L P K R +A+ETL I+ LA RLG+ +K ELE+L F L P +R ++
Sbjct: 149 SLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIK 199
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1
Length = 702
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ +S R K LYSI+ KM K+ H + D A RV+V D + CY +L
Sbjct: 228 GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSD---------TCYRVLG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+H L+ P G DYI PK +GYQSLHT++ GP G +EVQIRT+ M + AE G+AAH
Sbjct: 279 QMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAH 338
Query: 296 WLYKETG 302
W YKE G
Sbjct: 339 WAYKEHG 345
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+L P K R +A+ETL I+ LA RLG+ +K ELE+L F L P +R ++
Sbjct: 149 SLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIK 199
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1
Length = 847
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 85/153 (55%), Gaps = 14/153 (9%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ T++ R K YS++ KM + ++YD +RV+V ++ CY+ L
Sbjct: 331 IKATVTGRPKHYYSVYQKMIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 381
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH W P+ G F DYI PK + YQSLHT V GP G +E+QIRT MH AE+G+AAHW
Sbjct: 382 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPGGKPVELQIRTFDMHRRAEYGIAAHW 441
Query: 297 LYKETGNKLQSISSMDESDIEASSSLSKDTDDH 329
YK+ ++++ + +A S K DDH
Sbjct: 442 KYKQ-----EAVAGASKVRTDAPKSSGKSKDDH 469
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
A+ETL I+ LA RLG+ +K ELEDL FA+L P+++
Sbjct: 261 ARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMY 297
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
V V P G+++ L +G+T D A V E G + VNG+LV + L +GD+VEV
Sbjct: 505 VFVFTPKGDVIALPAGATPVDFAYAVHTEVGHRTIGARVNGRLVPLESTLDNGDLVEV 562
>sp|Q49640|RELA_MYCLE Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN)
GN=relA PE=3 SV=1
Length = 787
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
+IST ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 275 IISTLGASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGIRILCDE---------I 325
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 326 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 385
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE +
Sbjct: 386 AEYGIAAHWRYKEAKGR 402
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LPP K A+ETL + LA RLG+ ++K ELEDL FA+L P+ + ++
Sbjct: 205 LPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEI 253
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
+ V P G+++ L +GST D A V E G + VNG+LV +L++G+ VE+
Sbjct: 449 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEFVEI 506
>sp|P66015|RELA_MYCBO Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=relA PE=3 SV=1
Length = 790
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 278 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 328
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 329 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 388
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE +
Sbjct: 389 AEYGIAAHWRYKEAKGR 405
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LPP K A+ETL + LA RLG+ ++K ELEDL FA+L P+ + ++
Sbjct: 208 LPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEI 256
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
+ V P G+++ L +GST D A V E G + VNG+LV +L++G++VEV
Sbjct: 452 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEV 509
>sp|P66014|RELA_MYCTU Bifunctional (p)ppGpp synthase/hydrolase relA OS=Mycobacterium
tuberculosis GN=relA PE=1 SV=2
Length = 738
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 168 LISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAI 227
+++T ++ T+ R K +SI+ KM K ++D +R++ + I
Sbjct: 226 IVNTLTASKIKATVEGRPKHYWSIYQKMIVKGRDFDDIHDLVGVRILCDE---------I 276
Query: 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEY 287
+ CY+ + +VH LW P+ G F DYI P+ YQSLHT V GP+G LEVQIRT+ MH
Sbjct: 277 RDCYAAVGVVHSLWQPMAGRFKDYIAQPRYGVYQSLHTTVVGPEGKPLEVQIRTRDMHRT 336
Query: 288 AEHGLAAHWLYKETGNK 304
AE+G+AAHW YKE +
Sbjct: 337 AEYGIAAHWRYKEAKGR 353
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
LPP K A+ETL + LA RLG+ ++K ELEDL FA+L P+ + ++
Sbjct: 156 LPPEKQARKARETLEVIAPLAHRLGMASVKWELEDLSFAILHPKKYEEI 204
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
+ V P G+++ L +GST D A V E G + VNG+LV +L++G++VEV
Sbjct: 400 IFVFTPKGDVITLPTGSTPVDFAYAVHTEVGHRCIGARVNGRLVALERKLENGEVVEV 457
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 12/139 (8%)
Query: 165 KELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHG 224
K++LI+ M V + R KS+YSI+ KM + ++D A+R++
Sbjct: 225 KKILITEK---KMSVKVYGRSKSIYSIYRKMNQFGKNFDDIHDILAVRIITN-------- 273
Query: 225 PAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKM 284
++ CY +L VH+ + P++ F DYI PK + YQSLHT + DG EVQIRT++M
Sbjct: 274 -SVDDCYKVLGFVHQHYTPLNNRFKDYIATPKHNLYQSLHTTIVADDGLIFEVQIRTEEM 332
Query: 285 HEYAEHGLAAHWLYKETGN 303
E AE G+AAHW YKE N
Sbjct: 333 DELAEQGVAAHWRYKEGEN 351
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
L P + + +A+E+L I+ ++A RLG+ A+K E+ED+ F ++ P + K+ + L S R
Sbjct: 154 LKPERQQIIARESLEIYSAIAHRLGMKAVKQEIEDISFKIINPVQYNKIVSLLESSNKER 213
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 541 VVIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEVR 596
++ V PNG+++ L GST D A K+ E G+ + +NG +T LK GD+V+++
Sbjct: 408 LIYVLTPNGKVVTLPFGSTVLDFAYKIHSEIGEKTIGAKINGLFSPISTVLKSGDVVDIK 467
>sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus
dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1
Length = 739
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 10/125 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K +YSI+ KMR K +++D A+R V+ ++ Y+++
Sbjct: 233 GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSD---------VYAMVG 283
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
+H LW P+ G F DYI PK +GYQS+HT V GP G +E+QIRT++MH+ AE+G+AAH
Sbjct: 284 YIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKGP-IEIQIRTKEMHQVAEYGVAAH 342
Query: 296 WLYKE 300
W YK+
Sbjct: 343 WAYKK 347
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 13 KARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKM 57
K +++ET+ I+ LA RLG+ +K ELEDL F L F K+
Sbjct: 159 KQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKI 203
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3
SV=1
Length = 841
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
++ T++ R K YS++ K+ + ++YD +RV+V ++ CY+ L
Sbjct: 328 IKATVTGRPKHYYSVYQKIIVRGRDFAEIYDLVGIRVLVD---------TVRDCYAALGT 378
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
VH W P+ G F DYI PK + YQSLHT V GP+G +E+QIRT MH AE+G+AAHW
Sbjct: 379 VHARWNPVPGRFKDYIAMPKFNMYQSLHTTVIGPNGKPVELQIRTFDMHRRAEYGIAAHW 438
Query: 297 LYKE 300
YK+
Sbjct: 439 KYKQ 442
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 18 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
A+ETL I+ LA RLG+ +K ELEDL FA+L P+++
Sbjct: 258 ARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMY 294
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 447 PTFIQITHLTEEEESEYWAVVSAVFEGKPVDSVVSRRSSDSVAPTSMEASINNKVRLLRT 506
P +QI +EY ++ + V + S+ +D P + N + LR
Sbjct: 416 PVELQIRTFDMHRRAEYGIAAHWKYKQEAV-ARASKVRTDVPKPAKGKDDHLNDMAWLRQ 474
Query: 507 MLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMK 566
+L W+++ +S + V V P +++ L +G+T D A
Sbjct: 475 LLDWQKETEDPGEFLESLRFDLSRNE---------VFVFTPKSDVIALPAGATPVDFAYA 525
Query: 567 VGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
V E G + VNG+LV + L +GD+VEV
Sbjct: 526 VHTEVGHRTIGARVNGRLVPLESTLDNGDLVEV 558
>sp|P43811|SPOT_HAEIN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=spoT PE=3 SV=1
Length = 677
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K LY I+ KMR KD H + D A RV+V + + CY +L +H L+ P
Sbjct: 209 REKHLYKIYQKMRIKDQEFHSIMDIYAFRVIVKN---------VDDCYRVLGQMHNLYKP 259
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302
G DYI PK +GYQSL T++ GP G +EV I T+ M + AE G+ AHW+YKE G
Sbjct: 260 RPGRVKDYIAVPKANGYQSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENG 318
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
+L P K R +A+ETL I+C LA RLG+ +K ELEDL F + P + ++
Sbjct: 122 SLRPDKRRRIAKETLEIYCPLAHRLGIEHIKNELEDLSFQAMHPHRYEVLK 172
>sp|Q9KNM2|SPOT_VIBCH Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=spoT PE=1 SV=1
Length = 705
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G+ + R K+L+SI++KM+ K+ H + D A R+VV + CY +L
Sbjct: 228 GLPARVVGREKNLFSIYNKMKTKEQRFHTIMDIYAFRIVVDTAD---------TCYRVLG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
VH L+ P DYI PK +GYQSLHT++ GP G +EVQIRT+ M + A+ G+AAH
Sbjct: 279 QVHSLYKPRPARMKDYIAVPKANGYQSLHTSMVGPHGVPVEVQIRTEDMDQMADKGVAAH 338
Query: 296 WLYKETGNK 304
W YK +
Sbjct: 339 WSYKANSER 347
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 8 ALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMR 58
AL P K R +A+ETL I+ LA RLG+ +K ELE+L F L P +R ++
Sbjct: 149 ALRPDKKRRIARETLEIYAPLAHRLGIHNIKTELEELGFEALYPNRYRVLK 199
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2
Length = 750
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMESKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 296 WLYKETG--NKLQSISS 310
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+A+ET+ I+ LA R+G+ ++ ELE+L F + P +R + LA + +NR G ++
Sbjct: 158 IAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQK 215
Query: 77 ITTIVS 82
I T +S
Sbjct: 216 IETDLS 221
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus biovar 1 (strain
9-941) GN=rsh PE=1 SV=1
Length = 750
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 296 WLYKETG--NKLQSISS 310
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+A+ET+ I+ LA R+G+ ++ ELE+L F + P +R + LA + +NR G ++
Sbjct: 158 IAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQK 215
Query: 77 ITTIVS 82
I T +S
Sbjct: 216 IETDLS 221
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh
PE=3 SV=1
Length = 750
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 296 WLYKETG--NKLQSISS 310
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+A+ET+ I+ LA R+G+ ++ ELE+L F + P +R + LA + +NR G ++
Sbjct: 158 IAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQK 215
Query: 77 ITTIVS 82
I T +S
Sbjct: 216 IETDLS 221
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330)
GN=rsh PE=1 SV=1
Length = 750
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 296 WLYKETG--NKLQSISS 310
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+A+ET+ I+ LA R+G+ ++ ELE+L F + P +R + LA + +NR G ++
Sbjct: 158 IAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQK 215
Query: 77 ITTIVS 82
I T +S
Sbjct: 216 IETDLS 221
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rsh PE=3 SV=1
Length = 750
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
G++ ++ SR K +S+F KM K + ++ D RV+V +Q CY L
Sbjct: 228 GIKASVKSRQKKPWSVFRKMETKGLSFEQLSDIFGFRVMVD---------TVQDCYRALG 278
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H W + G F DYI PK + Y+S+HT + GP +E+QIRT++M E AE G+AAH
Sbjct: 279 LIHTTWSMVPGRFKDYISTPKQNDYRSIHTTIIGPSRQRIELQIRTREMDEIAEFGVAAH 338
Query: 296 WLYKETG--NKLQSISS 310
+YK+ G N IS+
Sbjct: 339 SIYKDRGSANNPHKIST 355
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 17 VAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRR 76
+A+ET+ I+ LA R+G+ ++ ELE+L F + P +R + LA + +NR G ++
Sbjct: 158 IAEETMDIYAPLAGRMGMQDMREELEELAFRYINPDAWRAVTDRLAELLE-KNR-GLLQK 215
Query: 77 ITTIVS 82
I T +S
Sbjct: 216 IETDLS 221
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=relA PE=3 SV=2
Length = 760
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 184 RLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243
R K +SI+ KM + ++D +R++V + N CY+ + +VH L+
Sbjct: 266 RPKHYWSIYQKMIVRGRDFDDIFDLVGIRILVDNVNN---------CYAAIGVVHSLFNA 316
Query: 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 301
+ G F DYI P+ YQSLHT V GP G LEVQ RT MH AE G+AAHW YKET
Sbjct: 317 LPGRFKDYISAPRFGVYQSLHTTVMGPGGKPLEVQARTHDMHYNAEFGIAAHWRYKET 374
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPR 68
LPP K A++TL + LA RLG+ ++K ELEDL FA+L P+ + ++ +A R
Sbjct: 180 LPPEKQAKKARQTLEVIAPLAHRLGMASVKWELEDLSFAILYPKKYEEIVRLVADRAPSR 239
Query: 69 NR 70
+R
Sbjct: 240 DR 241
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMKVGLE-GKLVL---VNGQLVLPNTELKDGDIVEV 595
+ V P G+++ L ST D A V E G + +NG+LV T+LK GD VEV
Sbjct: 420 IFVFTPKGDVVNLPVNSTPVDFAYAVHTEVGHRCIGAKINGKLVALETKLKSGDRVEV 477
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=spoT PE=3 SV=1
Length = 733
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 10/124 (8%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E L SR+K +YS + K+ + I K++D A+R++V + CY LL +
Sbjct: 252 IEYRLESRIKGIYSTYQKLTFHEQNIAKIHDLFAIRLIVKSELD---------CYHLLGL 302
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H + + F DYI +PK + YQS+HT V+ G +E+QIRTQ+M +++G A+HW
Sbjct: 303 IHLNFTVLMKHFKDYIASPKQNFYQSIHTTVR-LKGLNVEIQIRTQRMDHVSKYGFASHW 361
Query: 297 LYKE 300
+YKE
Sbjct: 362 IYKE 365
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIF 54
L K + +A+ETL ++ +A R+G++ +K +L DL F VL P+ F
Sbjct: 173 LAVEKQKIIAKETLELYAKIAGRIGMYPVKTQLADLSFKVLDPKNF 218
>sp|P47520|SPOT_MYCGE Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=spoT PE=3 SV=1
Length = 720
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 10/124 (8%)
Query: 177 MEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
+E L SR+K +YS + K+ + I K++D A+R++ + CY +L +
Sbjct: 239 IEYQLESRIKGIYSTYKKLTVHEQNISKIHDLFAIRLITKSELD---------CYHILGL 289
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHW 296
+H ++ F DYI +PK + YQS+HT V+ G +E+QIRTQ+M ++ GLA+HW
Sbjct: 290 IHLNFLIDSKYFKDYIASPKQNLYQSIHTTVR-LKGLNVEIQIRTQQMDNVSKFGLASHW 348
Query: 297 LYKE 300
+YKE
Sbjct: 349 IYKE 352
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 9 LPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVL 49
LP K + +A+ETL ++ +A R+G++ +K +L DL F VL
Sbjct: 160 LPIEKQKVIAKETLELYAKIAGRIGMYPVKTKLADLSFKVL 200
>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1
Length = 1179
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 176 GMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLD 235
++ +LS R+KS YSI+ K KD+ I + D A R +V +K + CY +
Sbjct: 209 NIKASLSYRIKSPYSIWIKTLVKDIHITALNDILAFRAIVPNK---------KACYDVSK 259
Query: 236 IVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAH 295
++H + I +F DYI PK +GYQS+H + G + +E+QIR+ MH ++G +AH
Sbjct: 260 LIHLHYNTITSQFVDYIRYPKNNGYQSIHLVISGGNKGNIELQIRSTTMHRQTQYG-SAH 318
Query: 296 WLYK 299
YK
Sbjct: 319 HTYK 322
>sp|O31611|YJBM_BACSU GTP pyrophosphokinase YjbM OS=Bacillus subtilis (strain 168)
GN=yjbM PE=1 SV=1
Length = 211
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 181 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL 240
++ R+K + SI K RRK + +H++ ++ + G + IQ +L +
Sbjct: 43 VTGRVKPVASILEKARRKSIPLHEI---ETMQDIAGLRIMCQFVDDIQIVKEML-FARKD 98
Query: 241 WIPIDGEFDDYIVNPKPSGYQSLH-------TAVQGPDGSALEVQIRTQKMHEYA--EHG 291
+ +D DYI K SGY+S H V G +E+QIRT M+ +A EH
Sbjct: 99 FTVVDQR--DYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHS 156
Query: 292 LAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDD 328
L YK +GN + + + EA+S L ++ +
Sbjct: 157 LN----YKYSGNIPEKVKLRLQRASEAASRLDEEMSE 189
>sp|P39583|YWAC_BACSU GTP pyrophosphokinase YwaC OS=Bacillus subtilis (strain 168)
GN=ywaC PE=1 SV=1
Length = 210
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 25/134 (18%)
Query: 183 SRLKSLYSIFSKMRRKDVGI------HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDI 236
SR+KS SI +K+ RK I ++D +R++ I Y+++++
Sbjct: 57 SRVKSFESIVNKLMRKGCEITTKEMKEHIHDIAGVRIICS---------FISDIYNVVNV 107
Query: 237 VHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGP-------DGSALEVQIRTQKMHEYAE 289
+ + + DYI PKP+GY+SLH ++ P + E+QIRT M +A
Sbjct: 108 LKQHEDLRIVKVKDYIQTPKPNGYRSLHLIIEMPVNLTNRVEYVKAEIQIRTIAMDFWAS 167
Query: 290 HGLAAHWLYKETGN 303
H +Y + N
Sbjct: 168 ---LEHKIYYKLNN 178
>sp|B6J5F6|RS4_COXB1 30S ribosomal protein S4 OS=Coxiella burnetii (strain CbuK_Q154)
GN=rpsD PE=3 SV=1
Length = 206
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 555 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 596
R G +A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFSATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
>sp|Q0K644|RS4_CUPNH 30S ribosomal protein S4 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rpsD PE=3 SV=1
Length = 207
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 551 IMRLRSGSTAADAAMKVGLEGKLVLVNGQ-LVLPNTELKDGDIVEVR 596
+ R+ GST A+A V K +LVNGQ L +P+ ++K GD+V +R
Sbjct: 103 VYRMGFGSTRAEARQLV--SHKAILVNGQTLNVPSAQIKSGDVVTIR 147
>sp|Q83EQ3|RS4_COXBU 30S ribosomal protein S4 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsD PE=3 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 555 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 596
R G A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFAATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
>sp|A9NAZ4|RS4_COXBR 30S ribosomal protein S4 OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=rpsD PE=3 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 555 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 596
R G A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFAATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
>sp|A9KD07|RS4_COXBN 30S ribosomal protein S4 OS=Coxiella burnetii (strain Dugway
5J108-111) GN=rpsD PE=3 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 555 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 596
R G A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFAATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
>sp|B6J239|RS4_COXB2 30S ribosomal protein S4 OS=Coxiella burnetii (strain CbuG_Q212)
GN=rpsD PE=3 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 555 RSGSTAADAAMKVGLEGKLVLVNGQLV-LPNTELKDGDIVEVR 596
R G A A + + K +LVNG++V +P+ ++K GDI+EVR
Sbjct: 104 RMGFAATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVR 146
>sp|A1ARE5|SYT_PELPD Threonine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=thrS PE=3 SV=1
Length = 636
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 542 VIVCWPNGEIMRLRSGSTAADAAMKVG-------LEGKLVLVNGQLVLPNTELKDGDIVE 594
+ + P+G + SGST AD A +G + GKL +G+LV +TELKD VE
Sbjct: 4 ISIALPDGSKREIASGSTIADLAASIGAGLAKAAIAGKL---DGELVDLSTELKDDSRVE 60
Query: 595 V 595
+
Sbjct: 61 I 61
>sp|Q1LI62|RS4_RALME 30S ribosomal protein S4 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rpsD PE=3 SV=1
Length = 207
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 551 IMRLRSGSTAADAAMKVGLEGKLVLVNGQ-LVLPNTELKDGDIVEVR 596
+ R+ GST A+A V K +LVNG+ L +P+ ++K GDIV VR
Sbjct: 103 VYRMGFGSTRAEARQLV--SHKAILVNGETLNVPSAQIKSGDIVSVR 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,594,722
Number of Sequences: 539616
Number of extensions: 8973653
Number of successful extensions: 24539
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 24364
Number of HSP's gapped (non-prelim): 142
length of query: 597
length of database: 191,569,459
effective HSP length: 123
effective length of query: 474
effective length of database: 125,196,691
effective search space: 59343231534
effective search space used: 59343231534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)