Query 007593
Match_columns 597
No_of_seqs 414 out of 2349
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 12:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1.2E-88 2.6E-93 758.2 26.3 328 4-526 150-490 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 2.2E-85 4.7E-90 741.0 25.5 337 4-525 161-510 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 5.7E-84 1.2E-88 729.8 26.6 332 4-526 145-489 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 3.9E-79 8.4E-84 690.9 26.8 329 4-524 120-461 (683)
5 KOG1157 Predicted guanosine po 100.0 2E-46 4.4E-51 391.1 14.4 201 4-304 199-400 (543)
6 cd05399 NT_Rel-Spo_like Nucleo 100.0 3.2E-28 7E-33 222.0 13.1 104 178-290 20-129 (129)
7 PF04607 RelA_SpoT: Region fou 100.0 9.3E-29 2E-33 220.6 8.0 108 183-301 1-114 (115)
8 COG2357 PpGpp synthetase catal 99.9 2.2E-26 4.8E-31 228.8 11.6 134 159-305 35-181 (231)
9 COG0317 SpoT Guanosine polypho 99.6 2.1E-16 4.5E-21 178.8 7.3 89 500-597 356-448 (701)
10 PRK11092 bifunctional (p)ppGpp 99.6 2.5E-16 5.4E-21 180.0 7.3 86 502-597 357-447 (702)
11 PRK10872 relA (p)ppGpp synthet 99.5 6.6E-15 1.4E-19 168.6 7.3 87 501-597 374-465 (743)
12 TIGR00691 spoT_relA (p)ppGpp s 99.5 3.5E-14 7.7E-19 162.4 8.0 86 502-597 331-421 (683)
13 PF02824 TGS: TGS domain; Int 99.1 3.6E-11 7.8E-16 97.4 4.6 56 542-597 1-60 (60)
14 cd01668 TGS_RelA_SpoT TGS_RelA 98.7 6.1E-08 1.3E-12 76.5 7.6 55 543-597 2-60 (60)
15 PRK01777 hypothetical protein; 98.6 1.1E-07 2.4E-12 84.1 6.9 47 550-596 19-74 (95)
16 PF14451 Ub-Mut7C: Mut7-C ubiq 98.4 5.2E-07 1.1E-11 77.7 6.5 47 550-596 25-74 (81)
17 cd01666 TGS_DRG_C TGS_DRG_C: 98.3 6.2E-07 1.3E-11 76.2 4.9 48 550-597 17-75 (75)
18 PRK06437 hypothetical protein; 98.2 4.5E-06 9.7E-11 69.3 6.7 47 550-596 13-61 (67)
19 PRK05659 sulfur carrier protei 98.2 4.9E-06 1.1E-10 68.0 6.6 52 545-596 3-60 (66)
20 cd01616 TGS The TGS domain, na 98.1 6.8E-06 1.5E-10 63.0 6.7 54 544-597 3-60 (60)
21 cd00565 ThiS ThiaminS ubiquiti 98.1 4.8E-06 1E-10 68.1 6.1 50 547-596 4-59 (65)
22 cd01669 TGS_Ygr210_C TGS_Ygr21 98.1 3.3E-06 7.1E-11 71.9 4.7 48 549-597 22-76 (76)
23 PRK06944 sulfur carrier protei 98.1 8.5E-06 1.8E-10 66.2 6.6 51 546-596 4-59 (65)
24 PF02824 TGS: TGS domain; Int 98.1 1.2E-06 2.7E-11 71.0 1.5 48 336-390 3-60 (60)
25 PRK08364 sulfur carrier protei 98.1 9.7E-06 2.1E-10 67.6 6.6 46 551-596 17-64 (70)
26 COG2104 ThiS Sulfur transfer p 97.9 2.1E-05 4.6E-10 65.7 6.3 51 546-596 6-62 (68)
27 TIGR01683 thiS thiamine biosyn 97.9 2.8E-05 6E-10 63.5 6.6 49 548-596 4-58 (64)
28 PRK07440 hypothetical protein; 97.9 3.9E-05 8.4E-10 64.3 6.5 53 544-596 6-64 (70)
29 PRK07696 sulfur carrier protei 97.7 6.8E-05 1.5E-09 62.2 5.9 51 546-596 4-61 (67)
30 cd00754 MoaD Ubiquitin domain 97.6 9.7E-05 2.1E-09 61.8 5.7 47 550-596 18-74 (80)
31 PRK08053 sulfur carrier protei 97.6 0.00017 3.6E-09 59.4 6.8 52 545-596 3-60 (66)
32 PRK06488 sulfur carrier protei 97.5 0.00023 4.9E-09 58.3 6.1 50 546-596 4-59 (65)
33 PLN02799 Molybdopterin synthas 97.5 0.00018 3.9E-09 61.2 5.6 49 548-596 19-76 (82)
34 PF03658 Ub-RnfH: RnfH family 97.4 9.6E-05 2.1E-09 64.3 2.9 45 551-595 17-70 (84)
35 cd01667 TGS_ThrRS_N TGS _ThrRS 97.4 0.00052 1.1E-08 52.9 6.6 53 544-596 3-59 (61)
36 PRK05863 sulfur carrier protei 97.3 0.00035 7.6E-09 57.4 4.8 52 545-596 3-59 (65)
37 cd01666 TGS_DRG_C TGS_DRG_C: 97.3 0.00013 2.9E-09 62.0 1.8 48 341-390 19-75 (75)
38 PF02597 ThiS: ThiS family; I 97.1 0.00052 1.1E-08 56.9 3.9 47 550-596 14-71 (77)
39 cd01669 TGS_Ygr210_C TGS_Ygr21 97.1 0.00033 7.2E-09 59.8 2.6 50 336-390 20-76 (76)
40 PRK06083 sulfur carrier protei 97.1 0.0022 4.8E-08 55.8 7.5 59 538-596 14-78 (84)
41 TIGR01682 moaD molybdopterin c 96.9 0.0019 4.1E-08 54.7 5.9 47 550-596 18-74 (80)
42 COG2914 Uncharacterized protei 96.5 0.0036 7.9E-08 55.5 4.5 47 550-596 19-74 (99)
43 cd04938 TGS_Obg-like TGS_Obg-l 96.4 0.0058 1.3E-07 52.1 5.0 48 550-597 24-76 (76)
44 TIGR01687 moaD_arch MoaD famil 96.3 0.0073 1.6E-07 51.8 5.5 46 550-596 18-82 (88)
45 PF14453 ThiS-like: ThiS-like 96.1 0.019 4.1E-07 46.7 6.1 51 546-596 4-54 (57)
46 PRK09602 translation-associate 96.0 0.0061 1.3E-07 66.7 4.1 47 550-597 341-394 (396)
47 PRK11130 moaD molybdopterin sy 95.7 0.026 5.7E-07 48.1 6.0 45 552-596 19-75 (81)
48 cd01764 Urm1 Urm1-like ubuitin 95.4 0.025 5.4E-07 50.1 5.1 41 556-596 27-88 (94)
49 PRK14707 hypothetical protein; 94.5 0.11 2.4E-06 65.9 8.5 108 182-301 2308-2424(2710)
50 PRK12444 threonyl-tRNA synthet 94.0 0.11 2.5E-06 59.9 7.0 55 542-596 6-64 (639)
51 cd01668 TGS_RelA_SpoT TGS_RelA 93.9 0.058 1.2E-06 42.2 3.1 48 336-390 3-60 (60)
52 PLN02908 threonyl-tRNA synthet 91.5 0.94 2E-05 53.2 10.1 57 540-596 50-111 (686)
53 cd01616 TGS The TGS domain, na 90.8 0.22 4.7E-06 37.7 2.8 43 341-390 11-60 (60)
54 COG1163 DRG Predicted GTPase [ 89.5 0.24 5.2E-06 53.3 2.6 45 552-596 308-363 (365)
55 PRK09602 translation-associate 89.4 0.14 3.1E-06 56.1 0.9 47 341-392 343-396 (396)
56 PRK09169 hypothetical protein; 89.2 2.4 5.3E-05 55.1 11.3 109 181-301 1916-2034(2316)
57 PTZ00258 GTP-binding protein; 88.9 0.66 1.4E-05 51.1 5.6 56 542-597 305-386 (390)
58 PRK01777 hypothetical protein; 88.1 0.4 8.7E-06 42.8 2.7 48 341-393 21-78 (95)
59 TIGR02988 YaaA_near_RecF S4 do 86.8 0.73 1.6E-05 36.9 3.3 26 570-595 32-58 (59)
60 PRK14707 hypothetical protein; 85.9 2 4.2E-05 55.5 7.7 103 186-300 2544-2654(2710)
61 PRK05659 sulfur carrier protei 85.1 0.93 2E-05 36.8 3.2 45 341-392 10-63 (66)
62 PF03658 Ub-RnfH: RnfH family 84.0 0.56 1.2E-05 41.1 1.5 48 341-393 18-75 (84)
63 cd01667 TGS_ThrRS_N TGS _ThrRS 83.0 1.2 2.6E-05 33.9 2.8 43 341-390 11-60 (61)
64 COG1977 MoaD Molybdopterin con 82.7 1.3 2.8E-05 38.3 3.2 43 554-596 24-78 (84)
65 PF01479 S4: S4 domain; Inter 81.4 1.2 2.6E-05 33.9 2.2 23 571-593 25-48 (48)
66 PF13510 Fer2_4: 2Fe-2S iron-s 80.4 3.5 7.7E-05 35.4 5.1 53 542-594 3-78 (82)
67 smart00363 S4 S4 RNA-binding d 80.1 1.8 3.9E-05 32.5 2.9 26 571-596 25-51 (60)
68 PF09138 Urm1: Urm1 (Ubiquitin 79.4 2.3 4.9E-05 38.2 3.7 46 551-596 21-90 (96)
69 cd00565 ThiS ThiaminS ubiquiti 78.6 1.8 3.9E-05 35.3 2.6 45 342-393 10-63 (65)
70 PRK00413 thrS threonyl-tRNA sy 78.2 1.6 3.5E-05 50.3 3.0 47 341-394 12-65 (638)
71 COG1188 Ribosome-associated he 78.1 2.3 4.9E-05 38.5 3.3 26 571-596 33-58 (100)
72 PRK08364 sulfur carrier protei 77.4 2.8 6E-05 34.9 3.4 47 341-392 18-67 (70)
73 TIGR02008 fdx_plant ferredoxin 76.8 6.4 0.00014 34.7 5.8 38 544-581 6-58 (97)
74 PRK07440 hypothetical protein; 75.1 3.3 7.2E-05 34.7 3.3 45 341-392 14-67 (70)
75 PRK06437 hypothetical protein; 74.7 3.2 6.9E-05 34.5 3.1 48 341-393 15-65 (67)
76 COG2104 ThiS Sulfur transfer p 74.6 3 6.5E-05 35.1 2.9 44 341-391 12-64 (68)
77 cd04938 TGS_Obg-like TGS_Obg-l 73.3 2.7 5.9E-05 35.9 2.4 44 341-390 26-76 (76)
78 PF00498 FHA: FHA domain; Int 72.2 2.2 4.8E-05 34.3 1.6 24 572-595 42-67 (68)
79 PRK06944 sulfur carrier protei 70.4 4.8 0.0001 32.5 3.1 47 341-393 10-63 (65)
80 cd01809 Scythe_N Ubiquitin-lik 68.8 30 0.00065 27.8 7.5 54 542-596 3-70 (72)
81 cd00165 S4 S4/Hsp/ tRNA synthe 68.7 5.8 0.00013 30.6 3.2 26 571-596 25-51 (70)
82 TIGR01683 thiS thiamine biosyn 67.8 3 6.4E-05 33.9 1.4 48 341-393 8-62 (64)
83 PRK08053 sulfur carrier protei 66.0 6.5 0.00014 32.2 3.1 24 368-393 37-64 (66)
84 PRK06488 sulfur carrier protei 64.3 6.2 0.00013 32.1 2.6 24 368-393 36-63 (65)
85 COG3383 Uncharacterized anaero 61.7 15 0.00032 43.9 5.9 56 540-595 3-76 (978)
86 cd00118 LysM Lysin domain, fou 59.5 7 0.00015 27.1 1.9 43 551-595 2-45 (46)
87 PRK09601 GTP-binding protein Y 59.0 5.9 0.00013 43.4 2.1 48 550-597 292-362 (364)
88 COG2914 Uncharacterized protei 58.4 6.5 0.00014 35.4 1.9 48 341-393 21-78 (99)
89 PRK07696 sulfur carrier protei 58.2 9.9 0.00021 31.5 2.8 23 368-392 38-64 (67)
90 PRK10713 2Fe-2S ferredoxin Yfa 57.3 33 0.00071 29.4 6.0 50 543-592 4-69 (84)
91 PTZ00305 NADH:ubiquinone oxido 55.2 27 0.00058 37.4 6.1 49 547-595 73-142 (297)
92 cd00196 UBQ Ubiquitin-like pro 54.9 75 0.0016 22.6 7.0 47 550-596 10-67 (69)
93 TIGR02007 fdx_isc ferredoxin, 53.3 47 0.001 30.0 6.6 26 545-570 11-36 (110)
94 smart00257 LysM Lysin motif. 51.0 12 0.00026 25.5 2.0 42 552-595 2-44 (44)
95 TIGR02899 spore_safA spore coa 50.8 9.7 0.00021 27.3 1.5 41 554-595 1-42 (44)
96 PRK05327 rpsD 30S ribosomal pr 49.9 15 0.00034 36.9 3.2 26 571-596 117-143 (203)
97 cd01805 RAD23_N Ubiquitin-like 48.5 63 0.0014 26.5 6.2 54 542-596 3-72 (77)
98 COG5131 URM1 Ubiquitin-like pr 47.6 19 0.00041 32.2 3.0 42 555-596 27-90 (96)
99 PLN00051 RNA-binding S4 domain 47.1 19 0.00041 37.9 3.5 27 571-597 215-242 (267)
100 cd01806 Nedd8 Nebb8-like ubiq 46.3 1.2E+02 0.0027 24.5 7.6 53 543-596 4-70 (76)
101 TIGR03069 PS_II_S4 photosystem 42.8 24 0.00051 36.8 3.4 26 571-596 207-233 (257)
102 cd01812 BAG1_N Ubiquitin-like 42.6 1E+02 0.0022 24.7 6.5 51 544-596 5-69 (71)
103 CHL00134 petF ferredoxin; Vali 42.2 67 0.0015 28.5 5.8 40 541-580 6-59 (99)
104 cd00754 MoaD Ubiquitin domain 42.2 26 0.00057 28.9 3.0 23 368-392 55-77 (80)
105 TIGR01017 rpsD_bact ribosomal 42.0 26 0.00056 35.2 3.4 26 571-596 114-140 (200)
106 PF06805 Lambda_tail_I: Bacter 41.7 43 0.00092 29.1 4.3 47 549-596 17-76 (82)
107 TIGR00384 dhsB succinate dehyd 40.5 32 0.00068 34.7 3.8 41 551-591 18-77 (220)
108 PRK00413 thrS threonyl-tRNA sy 39.6 29 0.00063 40.2 3.8 29 568-596 32-60 (638)
109 PRK06083 sulfur carrier protei 38.2 19 0.0004 31.5 1.5 24 368-393 55-82 (84)
110 PRK10348 ribosome-associated h 38.2 35 0.00077 32.4 3.5 26 571-596 33-58 (133)
111 PF14451 Ub-Mut7C: Mut7-C ubiq 37.9 30 0.00066 30.0 2.8 43 342-390 28-75 (81)
112 CHL00113 rps4 ribosomal protei 37.0 32 0.00068 34.8 3.2 26 571-596 113-139 (201)
113 cd01808 hPLIC_N Ubiquitin-like 36.0 1.4E+02 0.003 24.4 6.4 52 544-596 5-69 (71)
114 PF02597 ThiS: ThiS family; I 34.9 40 0.00087 27.5 3.0 24 368-393 49-75 (77)
115 COG1977 MoaD Molybdopterin con 34.8 45 0.00096 28.8 3.3 20 373-392 62-81 (84)
116 PRK11507 ribosome-associated p 34.2 44 0.00096 28.5 3.1 37 559-595 13-61 (70)
117 PTZ00038 ferredoxin; Provision 33.8 1E+02 0.0023 31.0 6.2 25 546-570 102-127 (191)
118 PF04753 Corona_NS2: Coronavir 33.6 18 0.0004 32.6 0.8 12 39-50 20-31 (109)
119 PF14009 DUF4228: Domain of un 33.4 1.4E+02 0.003 28.0 6.8 55 538-592 14-74 (181)
120 PLN03136 Ferredoxin; Provision 32.7 1.2E+02 0.0027 29.2 6.3 40 543-582 57-110 (148)
121 PRK12577 succinate dehydrogena 32.7 64 0.0014 34.8 4.8 40 550-589 21-78 (329)
122 PF01476 LysM: LysM domain; I 32.5 11 0.00023 27.7 -0.8 42 552-595 1-43 (44)
123 cd01791 Ubl5 UBL5 ubiquitin-li 31.1 2.5E+02 0.0054 23.6 7.2 52 543-595 5-70 (73)
124 cd01803 Ubiquitin Ubiquitin. U 29.8 3E+02 0.0064 22.2 7.4 54 542-596 3-70 (76)
125 PF11976 Rad60-SLD: Ubiquitin- 29.5 1.9E+02 0.004 23.4 6.1 55 543-597 4-72 (72)
126 cd01769 UBL Ubiquitin-like dom 29.0 1.5E+02 0.0033 23.0 5.4 44 552-596 12-67 (69)
127 cd00060 FHA Forkhead associate 29.0 48 0.001 27.8 2.6 24 572-595 66-91 (102)
128 COG0564 RluA Pseudouridylate s 28.9 46 0.001 35.3 2.9 24 573-596 38-61 (289)
129 cd00207 fer2 2Fe-2S iron-sulfu 28.8 72 0.0015 26.3 3.5 24 547-570 7-30 (84)
130 PLN02799 Molybdopterin synthas 28.4 56 0.0012 27.5 2.8 24 368-393 57-80 (82)
131 PF04225 OapA: Opacity-associa 28.2 15 0.00032 32.0 -0.7 45 551-596 4-52 (85)
132 PRK11025 23S rRNA pseudouridyl 27.8 54 0.0012 34.9 3.2 24 572-595 45-68 (317)
133 cd01764 Urm1 Urm1-like ubuitin 27.7 67 0.0014 28.5 3.3 38 355-392 54-91 (94)
134 PRK11840 bifunctional sulfur c 26.3 54 0.0012 35.6 2.9 48 341-393 10-64 (326)
135 PF04967 HTH_10: HTH DNA bindi 25.3 49 0.0011 26.6 1.8 21 550-570 16-36 (53)
136 COG2501 S4-like RNA binding pr 25.3 1.1E+02 0.0023 26.5 3.9 38 558-595 12-61 (73)
137 PF00240 ubiquitin: Ubiquitin 25.2 2.1E+02 0.0045 22.8 5.6 46 551-596 9-65 (69)
138 PRK10684 HCP oxidoreductase, N 24.4 3.1E+02 0.0067 29.1 8.2 44 540-583 248-303 (332)
139 KOG0245 Kinesin-like protein [ 24.3 53 0.0012 40.6 2.6 22 574-595 525-546 (1221)
140 PF13275 S4_2: S4 domain; PDB: 24.0 42 0.00091 28.2 1.2 37 559-595 9-57 (65)
141 PTZ00044 ubiquitin; Provisiona 23.0 2.9E+02 0.0063 22.5 6.1 54 542-596 3-70 (76)
142 cd01792 ISG15_repeat1 ISG15 ub 22.8 3E+02 0.0065 23.1 6.3 54 543-596 6-74 (80)
143 PRK11180 rluD 23S rRNA pseudou 22.7 79 0.0017 33.7 3.3 26 571-596 42-68 (325)
144 cd09011 Glo_EDI_BRP_like_23 Th 22.6 1.8E+02 0.004 25.1 5.2 45 228-278 73-117 (120)
145 PF14478 DUF4430: Domain of un 22.6 72 0.0016 26.2 2.4 22 574-595 43-67 (68)
146 PF02080 TrkA_C: TrkA-C domain 22.6 57 0.0012 26.1 1.8 41 556-596 13-57 (71)
147 cd01763 Sumo Small ubiquitin-r 22.1 1.8E+02 0.0039 25.0 4.9 53 543-596 15-81 (87)
148 PRK12576 succinate dehydrogena 21.8 97 0.0021 32.7 3.8 40 550-589 27-84 (279)
149 COG2302 Uncharacterized conser 21.5 65 0.0014 33.9 2.3 52 546-597 168-231 (257)
150 PRK11130 moaD molybdopterin sy 21.3 1.3E+02 0.0028 25.5 3.8 23 368-392 56-78 (81)
151 COG0522 RpsD Ribosomal protein 21.3 98 0.0021 31.5 3.5 25 572-596 119-144 (205)
152 PF08817 YukD: WXG100 protein 21.3 1E+02 0.0022 26.0 3.0 53 544-596 7-79 (79)
153 COG3400 Uncharacterized protei 20.8 1.4E+02 0.003 33.2 4.6 48 547-597 149-207 (471)
154 TIGR02907 spore_VI_D stage VI 20.5 57 0.0012 35.6 1.7 43 550-595 294-337 (338)
155 TIGR01682 moaD molybdopterin c 20.2 1.3E+02 0.0029 25.2 3.6 23 368-392 55-77 (80)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=1.2e-88 Score=758.15 Aligned_cols=328 Identities=35% Similarity=0.590 Sum_probs=289.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHhhhhhccChHHHHHHHHHHhhccCCCcccccccccccccCC
Q 007593 4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 83 (597)
Q Consensus 4 ~~~~alp~~Kq~~iA~ETl~iyaPLA~RLG~~~iK~ELEDL~F~~L~P~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (597)
|+..++|++||.+||+|||+||||||||||||.+|+|||||||+||+|+.|+.|.+.|.+
T Consensus 150 rtl~~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e-------------------- 209 (701)
T COG0317 150 RTLKNLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDE-------------------- 209 (701)
T ss_pred ccCccCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHH--------------------
Confidence 556778899999999999999999999999999999999999999999999999999875
Q ss_pred CCCccCcCCCCCcccchhhhhhhhhhhhhhccccchhhhhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHH
Q 007593 84 PPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 163 (597)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~v~~~d~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L 163 (597)
.|.+|+.+++++... +++.|
T Consensus 210 --------------------------------------~r~~re~~i~~~~~~----------------------l~~~L 229 (701)
T COG0317 210 --------------------------------------KRLEREQYIENVVSE----------------------LREEL 229 (701)
T ss_pred --------------------------------------HHHHHHHHHHHHHHH----------------------HHHHH
Confidence 678888999887543 45566
Q ss_pred HHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccC
Q 007593 164 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243 (597)
Q Consensus 164 ~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~p 243 (597)
.+. |++++|+||+||+||||+||++|+..|++|+|++||||||++ +.|||++||+||.+|+|
T Consensus 230 ~~~---------gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~~dCY~~LGiVH~~~kp 291 (701)
T COG0317 230 KAA---------GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALGIVHTLWKP 291 (701)
T ss_pred HHc---------CCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC---------hHHHHHHHHHHHhcCcC
Confidence 654 899999999999999999999999999999999999999997 78999999999999999
Q ss_pred cCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccccCCccccccccccchHhhhccCC
Q 007593 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLS 323 (597)
Q Consensus 244 ip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~~~~~~~s~~~~~l~~l~~lle 323 (597)
+|+|||||||+||+||||||||||.||.|.++||||||+.||..||+|+||||.||+++. ...+.+.+++.|++
T Consensus 292 ~PgrFKDYIA~PK~NgYQSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~------~~~~~~~Wlr~lle 365 (701)
T COG0317 292 IPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGS------AYEEKIAWLRQLLE 365 (701)
T ss_pred CCCccccccccCCCCCCceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCc------hhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999762 33444555555555
Q ss_pred CCCCCCCCCCcccccccccccCCCCeeeecCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC-----C-ccC
Q 007593 324 KDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF-----Q-IKC 397 (597)
Q Consensus 324 ~d~e~~~~~k~~vftPk~~Lp~Gat~LdfiG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~-----p-~~~ 397 (597)
...+.. |..+|+..++.+| ..|+|+|||||| | +++
T Consensus 366 ~q~~~~--------------------------------------d~~ef~e~~k~dl-f~d~VyvfTPkG~vi~LP~Gat 406 (701)
T COG0317 366 WQEESA--------------------------------------DSGEFLEQLKSDL-FPDRVYVFTPKGKVIDLPKGAT 406 (701)
T ss_pred HHHhcC--------------------------------------CcHHHHHHHhhcc-cCceEEEECCCCCEEeCCCCCc
Confidence 310000 1223455566666 679999999999 3 899
Q ss_pred hhhHHH-hhhccccccccCCCCCcccccccccccccCcEEecccCCCCcccceeeccccchhhhhhhhhhhccccCCceE
Q 007593 398 WEAYAR-LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPV 476 (597)
Q Consensus 398 WL~fa~-t~k~~~~~~~~~~g~~~~~~~~~~~~~c~~~~~~~~~~~~r~~p~~~~l~~l~~~~~~~~~~~~~~~~~G~~v 476 (597)
+||||| +| |++|| +|+|||| | ||++|++++| ++||+|
T Consensus 407 plDFAY~vH--------t~iG~-----------~c~gAkV---n--G~ivpl~~~L------------------k~Gd~V 444 (701)
T COG0317 407 PLDFAYAVH--------TDIGH-----------RCIGAKV---N--GRIVPLTTKL------------------QTGDQV 444 (701)
T ss_pred chhhhhhhh--------chhcc-----------eeeEEEE---C--CEEeccceec------------------CCCCEE
Confidence 999999 99 99999 9999999 9 9999999999 999999
Q ss_pred EEEecCCCCCCCCCCCchhhcccchhHHHh------HHHHHHhhhhHHHHHhcccC
Q 007593 477 DSVVSRRSSDSVAPTSMEASINNKVRLLRT------MLRWEEQLRSEASLRQSKLG 526 (597)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ln~~l~~LrT------~RqW~kq~~ree~i~~g~~~ 526 (597)
||+|++. ++|+.|||| ||+| +|+|||++.+++++..|+..
T Consensus 445 EIit~k~------~~Ps~~Wl~----~v~t~kAR~kIr~~~k~~~re~~i~~G~~l 490 (701)
T COG0317 445 EIITSKH------AGPSRDWLN----FVVTSRARAKIRAWFKKQDRDENVEAGREL 490 (701)
T ss_pred EEEeCCC------CCCCHHHHH----HHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999998 689999999 7776 39999999999999988844
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=2.2e-85 Score=740.97 Aligned_cols=337 Identities=30% Similarity=0.496 Sum_probs=293.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHhhhhhccChHHHHHHHHHHhhccCCCcccccccccccccCC
Q 007593 4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 83 (597)
Q Consensus 4 ~~~~alp~~Kq~~iA~ETl~iyaPLA~RLG~~~iK~ELEDL~F~~L~P~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (597)
|++++||++||++||+|||+||||||||||||.||+|||||||+||+|+.|+.|++.|.+
T Consensus 161 rTl~~~~~~kq~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~-------------------- 220 (743)
T PRK10872 161 REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHE-------------------- 220 (743)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------------
Confidence 667999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCccCcCCCCCcccchhhhhhhhhhhhhhccccchhhhhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHH
Q 007593 84 PPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 163 (597)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~v~~~d~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L 163 (597)
.+.+|+.+++.+... +++.|
T Consensus 221 --------------------------------------~~~~r~~~i~~~~~~----------------------l~~~L 240 (743)
T PRK10872 221 --------------------------------------RRIDREHYIEEFVGH----------------------LRAEM 240 (743)
T ss_pred --------------------------------------HHHHHHHHHHHHHHH----------------------HHHHH
Confidence 567888898887543 34555
Q ss_pred HHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccC
Q 007593 164 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243 (597)
Q Consensus 164 ~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~p 243 (597)
.+. |++++|+||+||+||||+||++++.+|++|+|++|+||||++ +.+||++||+||++|+|
T Consensus 241 ~~~---------~i~~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~---------~~dCY~vLg~ih~~~~p 302 (743)
T PRK10872 241 KAE---------GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER---------LQDCYAALGIVHTHYRH 302 (743)
T ss_pred Hhc---------CCceEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC---------HHHHHHHHHHHHhhccC
Confidence 543 889999999999999999999999999999999999999986 78999999999999999
Q ss_pred cCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccccCCccccccccccchHhhhccCC
Q 007593 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLS 323 (597)
Q Consensus 244 ip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~~~~~~~s~~~~~l~~l~~lle 323 (597)
+|++|||||++||+||||||||+|.+|+|.++||||||..||.+||+|+||||+||++.........++.++.+++.+++
T Consensus 303 ip~~fkDYIa~PK~NGYqSLHttv~~~~g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle 382 (743)
T PRK10872 303 LPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIA 382 (743)
T ss_pred CcchhhhcccCCCCCCcceeEEEEECCCCcEEEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999864321011134544555566655
Q ss_pred CCCCCCCCCCcccccccccccCCCCeeeecCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCCC------ccC
Q 007593 324 KDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ------IKC 397 (597)
Q Consensus 324 ~d~e~~~~~k~~vftPk~~Lp~Gat~LdfiG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~p------~~~ 397 (597)
...+.. |..+|+..++.+| ..|.|+||||+|. ++|
T Consensus 383 ~~~~~~--------------------------------------d~~ef~e~~k~dl-~~d~V~VfTPkG~~~~Lp~gaT 423 (743)
T PRK10872 383 WQEEMA--------------------------------------DSGEMLDEVRSQV-FDDRVYVFTPKGDVVDLPAGST 423 (743)
T ss_pred HHhccC--------------------------------------CHHHHHHHHHHHh-cCCeEEEECCCCCeEEcCCCCc
Confidence 210000 1224455666666 6699999999993 899
Q ss_pred hhhHHH-hhhccccccccCCCCCcccccccccccccCcEEecccCCCCcccceeeccccchhhhhhhhhhhccccCCceE
Q 007593 398 WEAYAR-LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPV 476 (597)
Q Consensus 398 WL~fa~-t~k~~~~~~~~~~g~~~~~~~~~~~~~c~~~~~~~~~~~~r~~p~~~~l~~l~~~~~~~~~~~~~~~~~G~~v 476 (597)
.||||| +| |++|| +|.||+| | |+++|++++| ++||+|
T Consensus 424 ~lDfAy~iH--------t~iG~-----------~~~gAkv---n--g~~v~l~~~L------------------~~GD~V 461 (743)
T PRK10872 424 PLDFAYHIH--------SDVGH-----------RCIGAKI---G--GRIVPFTYQL------------------QMGDQI 461 (743)
T ss_pred HHHHHHHHh--------HHHHh-----------hceEEEE---C--CEECCCCcCC------------------CCCCEE
Confidence 999999 99 99999 9999999 9 9999999999 999999
Q ss_pred EEEecCCCCCCCCCCCchhhcccchhHHHhH------HHHHHhhhhHHHHHhccc
Q 007593 477 DSVVSRRSSDSVAPTSMEASINNKVRLLRTM------LRWEEQLRSEASLRQSKL 525 (597)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ln~~l~~LrT~------RqW~kq~~ree~i~~g~~ 525 (597)
||+|++. ++|+.|||++.++||+|. |+||+++++++++..|+.
T Consensus 462 eIits~~------~~Ps~dWL~~~lg~v~T~rAR~kIr~~~k~~~~~~~i~~Gr~ 510 (743)
T PRK10872 462 EIITQKQ------PNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQ 510 (743)
T ss_pred EEEeCCC------CCCChhHhccccCeeeCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 589999999888999994 999999999999888884
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=5.7e-84 Score=729.85 Aligned_cols=332 Identities=31% Similarity=0.481 Sum_probs=288.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHhhhhhccChHHHHHHHHHHhhccCCCcccccccccccccCC
Q 007593 4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 83 (597)
Q Consensus 4 ~~~~alp~~Kq~~iA~ETl~iyaPLA~RLG~~~iK~ELEDL~F~~L~P~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (597)
|++.++|++||++||+|||+|||||||||||+.||+|||||||+||+|+.|+.|.+.|.+
T Consensus 145 rtL~~~~~ek~~~iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~-------------------- 204 (702)
T PRK11092 145 RTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKA-------------------- 204 (702)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--------------------
Confidence 556889999999999999999999999999999999999999999999999999998865
Q ss_pred CCCccCcCCCCCcccchhhhhhhhhhhhhhccccchhhhhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHH
Q 007593 84 PPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 163 (597)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~v~~~d~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L 163 (597)
.+.+|+.+++++... +++.|
T Consensus 205 --------------------------------------~~~~r~~~i~~~~~~----------------------l~~~l 224 (702)
T PRK11092 205 --------------------------------------ARGNRKEMIQKILSE----------------------IEGRL 224 (702)
T ss_pred --------------------------------------HHHHHHHHHHHHHHH----------------------HHHHH
Confidence 567788888887543 35556
Q ss_pred HHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccC
Q 007593 164 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243 (597)
Q Consensus 164 ~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~p 243 (597)
++. |++++|+||.|++||||+||++|+.+|++|+|++|+||||++ +.|||++||+||++|+|
T Consensus 225 ~~~---------~i~~~i~~R~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~---------~~dCY~~lg~ih~~~~p 286 (702)
T PRK11092 225 QEA---------GIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD---------SDTCYRVLGQMHSLYKP 286 (702)
T ss_pred HHc---------CCcEEEEeccCCHHHHHHHHHHcCCChhHhccceeEEEEECC---------HHHHHHHHHHHHhcCCC
Confidence 553 889999999999999999999999999999999999999986 78999999999999999
Q ss_pred cCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccccCCccccccccccchHhhhccCC
Q 007593 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLS 323 (597)
Q Consensus 244 ip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~~~~~~~s~~~~~l~~l~~lle 323 (597)
+|++|||||++||+||||||||+|.+|+|.++||||||..||.+||+|+||||+||++.... . +...+++.+++.+++
T Consensus 287 ip~~~kDyIa~PK~NgYqSLHt~v~g~~g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~-~-~~~~~~~~wlr~ll~ 364 (702)
T PRK11092 287 RPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETG-T-TAQIRAQRWMQSLLE 364 (702)
T ss_pred CcCccccccCCCCCCCCceEEEEEECCCCcEEEEEEEcHHHHHHHhhhhHhhhhhccCCCcc-c-hhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999864321 1 122334556666665
Q ss_pred CCCCCCCCCCcccccccccccCCCCeeeecCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC-----C-ccC
Q 007593 324 KDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF-----Q-IKC 397 (597)
Q Consensus 324 ~d~e~~~~~k~~vftPk~~Lp~Gat~LdfiG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~-----p-~~~ 397 (597)
...+ .+ +..+++..++.+| ..|+|+||||+| | ++|
T Consensus 365 ~~~~-----------------~~---------------------~~~ef~~~~~~dl-~~d~v~VfTP~G~v~~LP~GaT 405 (702)
T PRK11092 365 LQQS-----------------AG---------------------SSFEFIESVKSDL-FPDEIYVFTPEGRIVELPAGAT 405 (702)
T ss_pred HHhh-----------------cC---------------------ChHHHHHHHHhhh-ccceEEEECCCCCEEeCCCCCc
Confidence 3100 00 1124456666677 679999999999 3 899
Q ss_pred hhhHHH-hhhccccccccCCCCCcccccccccccccCcEEecccCCCCcccceeeccccchhhhhhhhhhhccccCCceE
Q 007593 398 WEAYAR-LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPV 476 (597)
Q Consensus 398 WL~fa~-t~k~~~~~~~~~~g~~~~~~~~~~~~~c~~~~~~~~~~~~r~~p~~~~l~~l~~~~~~~~~~~~~~~~~G~~v 476 (597)
+||||| +| |++|| +|+|||| | |+++|+.++| ++||+|
T Consensus 406 ~lDFAY~iH--------t~iG~-----------~c~gAkV---N--g~~vpL~~~L------------------~~Gd~V 443 (702)
T PRK11092 406 PVDFAYAVH--------TDIGH-----------ACVGARV---D--RQPYPLSQPL------------------TSGQTV 443 (702)
T ss_pred hhhhhHhhC--------chhhc-----------eeEEEEE---C--CEECCCCccC------------------CCCCEE
Confidence 999999 99 99999 9999999 9 9999999999 999999
Q ss_pred EEEecCCCCCCCCCCCchhhcccchhHHHhH------HHHHHhhhhHHHHHhcccC
Q 007593 477 DSVVSRRSSDSVAPTSMEASINNKVRLLRTM------LRWEEQLRSEASLRQSKLG 526 (597)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ln~~l~~LrT~------RqW~kq~~ree~i~~g~~~ 526 (597)
||+|++. ++|+.|||+ ||+|. |+||+++++++++..|+..
T Consensus 444 eIiT~~~------~~P~~dWL~----~v~T~rAr~kIr~~~r~~~~~~~i~~Gr~l 489 (702)
T PRK11092 444 EIITAPG------ARPNAAWLN----FVVSSKARAKIRQLLKNLKRDDSVSLGRRL 489 (702)
T ss_pred EEEeCCC------CCCChHHHH----HhhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999987 469999998 77774 9999999999999888854
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=3.9e-79 Score=690.94 Aligned_cols=329 Identities=32% Similarity=0.522 Sum_probs=287.8
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHhhhhhccChHHHHHHHHHHhhccCCCcccccccccccccCC
Q 007593 4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 83 (597)
Q Consensus 4 ~~~~alp~~Kq~~iA~ETl~iyaPLA~RLG~~~iK~ELEDL~F~~L~P~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (597)
|++.++|++||++||+||++|||||||||||+.||+|||||||+||+|++|+.|.+.|.+
T Consensus 120 rtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik~eLedl~f~~l~p~~y~~i~~~l~~-------------------- 179 (683)
T TIGR00691 120 RTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIKTELEDLSFKYLYPKEYENIKSLVNE-------------------- 179 (683)
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------------
Confidence 455889999999999999999999999999999999999999999999999999999875
Q ss_pred CCCccCcCCCCCcccchhhhhhhhhhhhhhccccchhhhhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHH
Q 007593 84 PPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 163 (597)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~v~~~d~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L 163 (597)
.+.+|+.+++.+... +++.|
T Consensus 180 --------------------------------------~~~~~~~~~~~~~~~----------------------l~~~l 199 (683)
T TIGR00691 180 --------------------------------------QKVNRENKLEKFKSE----------------------LEKRL 199 (683)
T ss_pred --------------------------------------HHHHHHHHHHHHHHH----------------------HHHHH
Confidence 567788888877543 34455
Q ss_pred HHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccC
Q 007593 164 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243 (597)
Q Consensus 164 ~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~p 243 (597)
.+. |++++|+||+|++||||+||++++.+|++|+|++|+||||++ +.|||+++|+||++|+|
T Consensus 200 ~~~---------~i~~~i~~R~K~~~Si~~Km~~k~~~~~~i~Di~~~RIi~~~---------~~dcy~vlg~ih~~~~p 261 (683)
T TIGR00691 200 EDS---------GIEAELEGRSKHLYSIYQKMTRKGQNFDEIHDLLAIRIIVKS---------ELDCYRVLGIIHLLFKP 261 (683)
T ss_pred Hhc---------CCceEEEeeeCCHHHHHHHHHhcCCCHHHcccceeEEEEECC---------HHHHHHHHHHHHhcCCC
Confidence 442 888999999999999999999999999999999999999987 78999999999999999
Q ss_pred cCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccccCCccccccccccchHhhhccCC
Q 007593 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLS 323 (597)
Q Consensus 244 ip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~~~~~~~s~~~~~l~~l~~lle 323 (597)
+|++|||||++||+||||||||+|.+|+|.++||||||..||.|||+|+||||+||++.... ...+.++.+++.+++
T Consensus 262 ~~~~~kDyIa~PK~nGYqSlHt~v~~~~g~~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~~~---~~~~~~~~wl~~~~~ 338 (683)
T TIGR00691 262 IPGRFKDYIASPKENGYQSLHTTVRGPKGLPVEIQIRTEDMDRVAEYGIAAHWIYKEGNPQK---EALIDDMRWLNYLVE 338 (683)
T ss_pred CcccccccccCCCCCCcceeEEEEEcCCCCEEEEEEEehHHHHHHHHHHHHHHhhcCCCCcc---hhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999864321 124555666677766
Q ss_pred CCCCCCCCCCcccccccccccCCCCeeeecCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCCC------ccC
Q 007593 324 KDTDDHNPLDTDLFQKYSSLKMGHPVIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ------IKC 397 (597)
Q Consensus 324 ~d~e~~~~~k~~vftPk~~Lp~Gat~LdfiG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~p------~~~ 397 (597)
...+.. +..+++..++..| ..|.|+||||+|. ++|
T Consensus 339 ~~~~~~--------------------------------------~~~~~~~~~k~~l-~~~~i~vfTPkG~~~~lp~gst 379 (683)
T TIGR00691 339 WQQESA--------------------------------------NFFEFIENLKSDL-FNEEIYVFTPKGDVVELPSGST 379 (683)
T ss_pred HHhhcc--------------------------------------cchhHHHHhhHHh-ccCceEEECCCCeEEEcCCCCC
Confidence 310000 1224456666666 6699999999993 899
Q ss_pred hhhHHH-hhhccccccccCCCCCcccccccccccccCcEEecccCCCCcccceeeccccchhhhhhhhhhhccccCCceE
Q 007593 398 WEAYAR-LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEGKPV 476 (597)
Q Consensus 398 WL~fa~-t~k~~~~~~~~~~g~~~~~~~~~~~~~c~~~~~~~~~~~~r~~p~~~~l~~l~~~~~~~~~~~~~~~~~G~~v 476 (597)
.||||| +| +++|| +|.+|+| | |+.+|++++| .+||.|
T Consensus 380 ~~DfAy~ih--------~~~g~-----------~~~~a~v---n--g~~v~l~~~l------------------~~gd~v 417 (683)
T TIGR00691 380 PVDFAYAVH--------TDVGN-----------KCTGAKV---N--GKIVPLDKEL------------------ENGDVV 417 (683)
T ss_pred HHHHHHHHh--------HHhHh-----------ceeEEEE---C--CEECCCCccC------------------CCCCEE
Confidence 999999 99 99999 9999999 9 9999999999 999999
Q ss_pred EEEecCCCCCCCCCCCchhhcccchhHHHhH------HHHHHhhhhHHHHHhcc
Q 007593 477 DSVVSRRSSDSVAPTSMEASINNKVRLLRTM------LRWEEQLRSEASLRQSK 524 (597)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ln~~l~~LrT~------RqW~kq~~ree~i~~g~ 524 (597)
||+|++. ++|+.|||+ ||+|. |+||+++++++++..|+
T Consensus 418 ei~t~~~------~~P~~dWL~----~v~T~rAR~kIr~~~k~~~r~~~i~~G~ 461 (683)
T TIGR00691 418 EIITGKN------SNPSVIWLN----FVVTSKARNKIRQWLKKLRREVAISEGK 461 (683)
T ss_pred EEEeCCC------CCCCHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 579999998 77773 99999999999999997
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-46 Score=391.06 Aligned_cols=201 Identities=43% Similarity=0.659 Sum_probs=174.7
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHhhhhhccChHHHHHHHHHHhhccCCCcccccccccccccCC
Q 007593 4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 83 (597)
Q Consensus 4 ~~~~alp~~Kq~~iA~ETl~iyaPLA~RLG~~~iK~ELEDL~F~~L~P~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (597)
|.++++||-+|++.+.||+.||||||+|+|....+.+||+|||+||+|-.|-.+...|...
T Consensus 199 RdL~~lpPvgwq~~r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~------------------- 259 (543)
T KOG1157|consen 199 RDLYALPPVGWQRFRKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDS------------------- 259 (543)
T ss_pred hhhhccCcchhHHHHHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcc-------------------
Confidence 5679999999999999999999999999999999999999999999999999999988640
Q ss_pred CCCccCcCCCCCcccchhhhhhhhhhhhhhccccchhhhhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHH
Q 007593 84 PPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 163 (597)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~v~~~d~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L 163 (597)
+|+ ..|...+. .++++|
T Consensus 260 ----------------~~~-------------------------~mi~~~~~----------------------~l~~~l 276 (543)
T KOG1157|consen 260 ----------------FDE-------------------------AMITSAIE----------------------KLEQAL 276 (543)
T ss_pred ----------------cch-------------------------HHHHHHHH----------------------HHHHHH
Confidence 111 12222111 123444
Q ss_pred HHHHhhccCCCCCc-eEEEEEeecChHHHHHHHHhcCCCCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhccc
Q 007593 164 EKELLISTSYIPGM-EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWI 242 (597)
Q Consensus 164 ~~el~~~~~~~~gi-~~~V~gRvK~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~ 242 (597)
..+ |+ .+-|+||.|+.||||.||.|++...++|+|+.|+|+|+.+ ..|||+++|+||++|+
T Consensus 277 ~~a---------~i~~~~i~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~---------~~~cyk~~~vv~slw~ 338 (543)
T KOG1157|consen 277 KKA---------GISYHVIKGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDN---------ESDCYKALGVVHSLWS 338 (543)
T ss_pred Hhc---------cceeEEEecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcC---------chHHHHHHHHHHHHHH
Confidence 433 44 3579999999999999999999999999999999999987 3699999999999999
Q ss_pred CcCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccccCCc
Q 007593 243 PIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 304 (597)
Q Consensus 243 pip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~~~ 304 (597)
.+|++.||||+.||.||||||||+|++..-.|+||||||..||.-||+|.||||+||++..+
T Consensus 339 evp~k~kdyia~pk~ngy~slh~~v~~d~~~plevqirt~em~~~a~~g~aah~~yk~g~~~ 400 (543)
T KOG1157|consen 339 EVPGKLKDYIAHPKFNGYQSLHTVVMVDGTRPLEVQIRTMEMHLQAEFGFAAHWRYKEGKTS 400 (543)
T ss_pred hCcchhhhhhcCccccccceeeeEEecCCcceeEEEEeeeccccccccchhhHhhhhcCCCC
Confidence 99999999999999999999999999855589999999999999999999999999997544
No 6
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.95 E-value=3.2e-28 Score=222.01 Aligned_cols=104 Identities=45% Similarity=0.770 Sum_probs=99.0
Q ss_pred eEEEEEeecChHHHHHHHHhcCCCC---cccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccCcCCcccccccC
Q 007593 178 EVTLSSRLKSLYSIFSKMRRKDVGI---HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVN 254 (597)
Q Consensus 178 ~~~V~gRvK~~ySI~~Km~rk~~~~---~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~pip~r~kDyIa~ 254 (597)
.+.|.+|+|+++|+++|+.+++... ++|+|++|+||||++ ..|||.++++|++.|++.|++++|||++
T Consensus 20 ~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~---------~~d~~~v~~~l~~~f~~~~~~~~D~~~~ 90 (129)
T cd05399 20 VASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF---------VDDCYRVLDLLHSLFKVIPGRVKDYIAE 90 (129)
T ss_pred CcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC---------HHHHHHHHHHHHhCCcccCccccCCcCC
Confidence 5789999999999999999998777 999999999999997 6899999999999999999999999999
Q ss_pred CCCCCcceeEEEEEcCC---CceEEEEEeehhhHHHHHh
Q 007593 255 PKPSGYQSLHTAVQGPD---GSALEVQIRTQKMHEYAEH 290 (597)
Q Consensus 255 PK~nGYqSLHttV~gp~---g~~vEVQIRT~~Mh~wAE~ 290 (597)
||+|||||+|++|..++ |.++||||||..||+|||.
T Consensus 91 p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 91 PKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred CCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 99999999999999877 8999999999999999984
No 7
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.95 E-value=9.3e-29 Score=220.61 Aligned_cols=108 Identities=37% Similarity=0.548 Sum_probs=93.2
Q ss_pred EeecChHHHHHHHHhcCC---CCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccCcCCcccccccCCCCCC
Q 007593 183 SRLKSLYSIFSKMRRKDV---GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 259 (597)
Q Consensus 183 gRvK~~ySI~~Km~rk~~---~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~pip~r~kDyIa~PK~nG 259 (597)
+|+|+++|+++|+.|++. .+.+|+|++|+||||.+ .+|||.++++|++.|.+.+.+++|||+.|+.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~---------~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~G 71 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYF---------PDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNG 71 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESS---------CCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEee---------HHHHHHHHHHHHHcCCcccccccccccccccCC
Confidence 699999999999999875 78999999999999987 479999999999999999999999999999999
Q ss_pred cceeEEEE---EcCCCceEEEEEeehhhHHHHHhhhhhhhhcccc
Q 007593 260 YQSLHTAV---QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 301 (597)
Q Consensus 260 YqSLHttV---~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~ 301 (597)
|||+|++| ..+.+.++||||||.+||.|||..| ||.||..
T Consensus 72 Yrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei~h--~~~YK~~ 114 (115)
T PF04607_consen 72 YRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEIEH--DLRYKSS 114 (115)
T ss_dssp --EEEEEEEETTECEEEEEEEEEEEHHHHHHHHHHH--HHHHHCT
T ss_pred cEeeEeeeeecccCCCceeeeeeccHHHHHHHHHHH--HHhCCCC
Confidence 99999999 3357899999999999999999554 6999964
No 8
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.93 E-value=2.2e-26 Score=228.81 Aligned_cols=134 Identities=31% Similarity=0.381 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCC------cccccceeEEEEEeCCCCCCCCCcHHHHHH
Q 007593 159 CEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI------HKVYDARALRVVVGDKNGTLHGPAIQCCYS 232 (597)
Q Consensus 159 ~~~~L~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~------~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~ 232 (597)
....+..++.....|.|.. .|++|+|++.||..|++|||.++ +.|+|++|+||+|.+ ++|.|.
T Consensus 35 k~~~~~~~~~~~~~~~pie--~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~F---------~~DI~~ 103 (231)
T COG2357 35 KLKILRDEYEKLHDYNPIE--HVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQF---------VDDIYR 103 (231)
T ss_pred HHHHHHHHHHhhcCCCchH--HHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeeeh---------HhhHHH
Confidence 3445666666666777654 48999999999999999999543 589999999999997 789999
Q ss_pred HHHHHHhcccCcCCcccccccCCCCCCcceeEEEEEcCC-------CceEEEEEeehhhHHHHHhhhhhhhhccccCCcc
Q 007593 233 LLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD-------GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 305 (597)
Q Consensus 233 vlgiIh~~~~pip~r~kDyIa~PK~nGYqSLHttV~gp~-------g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~~~~ 305 (597)
+..+|.+.........||||.+||+|||||+|++|..|- +..+||||||.+||.||++.|. ..||-++..|
T Consensus 104 v~~~l~~~~d~~iv~~kDyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~--l~YKy~~~~P 181 (231)
T COG2357 104 VVDLLKSRKDFTIVEEKDYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHK--LRYKYGGEVP 181 (231)
T ss_pred HHHHHhcccCccchhHHHHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHH--hhccccccCh
Confidence 999999886665567899999999999999999998763 3799999999999999999998 5777655554
No 9
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=99.64 E-value=2.1e-16 Score=178.79 Aligned_cols=89 Identities=31% Similarity=0.436 Sum_probs=79.4
Q ss_pred chhHHHhHHHHHHhhhhHHHHHhcccCCCCCCCCCCCCCCceEEEEccCCceEEcCCCCCHHHHHHHh----CCcceEEE
Q 007593 500 KVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLVL 575 (597)
Q Consensus 500 ~l~~LrT~RqW~kq~~ree~i~~g~~~~~~~~~~~~~l~~ev~~vf~p~g~~~~lp~GaTv~D~a~~l----gi~~~~~~ 575 (597)
+..|++.+.+||++......+ ++.+|.+|+.|.||||||+|++++||.|||+.||||++ |..|.+|+
T Consensus 356 ~~~Wlr~lle~q~~~~d~~ef---------~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAk 426 (701)
T COG0317 356 KIAWLRQLLEWQEESADSGEF---------LEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAK 426 (701)
T ss_pred HHHHHHHHHHHHHhcCCcHHH---------HHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEE
Confidence 345889999999998844433 38899999999999999999999999999999999997 56699999
Q ss_pred ECCeecCCCCcCCCCCEEEEeC
Q 007593 576 VNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 576 VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
|||+++||+|+|++||+|+|++
T Consensus 427 VnG~ivpl~~~Lk~Gd~VEIit 448 (701)
T COG0317 427 VNGRIVPLTTKLQTGDQVEIIT 448 (701)
T ss_pred ECCEEeccceecCCCCEEEEEe
Confidence 9999999999999999999985
No 10
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=99.63 E-value=2.5e-16 Score=180.05 Aligned_cols=86 Identities=24% Similarity=0.273 Sum_probs=76.5
Q ss_pred hHHHhHHHHHHhhhh-HHHHHhcccCCCCCCCCCCCCCCceEEEEccCCceEEcCCCCCHHHHHHHh----CCcceEEEE
Q 007593 502 RLLRTMLRWEEQLRS-EASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLVLV 576 (597)
Q Consensus 502 ~~LrT~RqW~kq~~r-ee~i~~g~~~~~~~~~~~~~l~~ev~~vf~p~g~~~~lp~GaTv~D~a~~l----gi~~~~~~V 576 (597)
.||+.++.|+++... .+++ +.++.+|+.|-+|||||+|+++.||.||||.||||++ |..|.+|+|
T Consensus 357 ~wlr~ll~~~~~~~~~~ef~----------~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkV 426 (702)
T PRK11092 357 RWMQSLLELQQSAGSSFEFI----------ESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARV 426 (702)
T ss_pred HHHHHHHHHHhhcCChHHHH----------HHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEE
Confidence 499999999887543 4444 7778889888888999999999999999999999997 667999999
Q ss_pred CCeecCCCCcCCCCCEEEEeC
Q 007593 577 NGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 577 NGr~~~l~t~L~dGD~V~i~~ 597 (597)
||++|||+|+|++||+|+|++
T Consensus 427 Ng~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 427 DRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred CCEECCCCccCCCCCEEEEEe
Confidence 999999999999999999985
No 11
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=99.54 E-value=6.6e-15 Score=168.62 Aligned_cols=87 Identities=28% Similarity=0.438 Sum_probs=77.0
Q ss_pred hhHHHhHHHHHHhhhh-HHHHHhcccCCCCCCCCCCCCCCceEEEEccCCceEEcCCCCCHHHHHHHh----CCcceEEE
Q 007593 501 VRLLRTMLRWEEQLRS-EASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKV----GLEGKLVL 575 (597)
Q Consensus 501 l~~LrT~RqW~kq~~r-ee~i~~g~~~~~~~~~~~~~l~~ev~~vf~p~g~~~~lp~GaTv~D~a~~l----gi~~~~~~ 575 (597)
+.||+.++.|+++... .+++ +.+|.+|+.|-+|||||+|+++.||.||||.||||++ |..|.+|+
T Consensus 374 ~~wLr~lle~~~~~~d~~ef~----------e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAk 443 (743)
T PRK10872 374 IAWLRKLIAWQEEMADSGEML----------DEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAK 443 (743)
T ss_pred HHHHHHHHHHHhccCCHHHHH----------HHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEE
Confidence 4599999999988653 4554 7778889777788999999999999999999999997 66799999
Q ss_pred ECCeecCCCCcCCCCCEEEEeC
Q 007593 576 VNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 576 VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
|||+.||++++|++||+|+|++
T Consensus 444 vng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 444 IGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred ECCEECCCCcCCCCCCEEEEEe
Confidence 9999999999999999999974
No 12
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=99.49 E-value=3.5e-14 Score=162.44 Aligned_cols=86 Identities=31% Similarity=0.426 Sum_probs=75.4
Q ss_pred hHHHhHHHHHHhhhh-HHHHHhcccCCCCCCCCCCCCCCceEEEEccCCceEEcCCCCCHHHHHHHhC----CcceEEEE
Q 007593 502 RLLRTMLRWEEQLRS-EASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG----LEGKLVLV 576 (597)
Q Consensus 502 ~~LrT~RqW~kq~~r-ee~i~~g~~~~~~~~~~~~~l~~ev~~vf~p~g~~~~lp~GaTv~D~a~~lg----i~~~~~~V 576 (597)
.|++.++.|+.+... .++ ++.++.+|+.|-+|||||+|+++.||.||||.||||+++ ..|.+|+|
T Consensus 331 ~wl~~~~~~~~~~~~~~~~----------~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~v 400 (683)
T TIGR00691 331 RWLNYLVEWQQESANFFEF----------IENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKV 400 (683)
T ss_pred HHHHHHHHHHhhcccchhH----------HHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEE
Confidence 499999999887643 333 377888897777889999999999999999999999975 56999999
Q ss_pred CCeecCCCCcCCCCCEEEEeC
Q 007593 577 NGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 577 NGr~~~l~t~L~dGD~V~i~~ 597 (597)
||+.||++++|++||+|+|++
T Consensus 401 ng~~v~l~~~l~~gd~vei~t 421 (683)
T TIGR00691 401 NGKIVPLDKELENGDVVEIIT 421 (683)
T ss_pred CCEECCCCccCCCCCEEEEEe
Confidence 999999999999999999974
No 13
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.15 E-value=3.6e-11 Score=97.36 Aligned_cols=56 Identities=39% Similarity=0.535 Sum_probs=50.7
Q ss_pred EEEEccCCceEEcCCCCCHHHHHHHhCC----cceEEEECCeecCCCCcCCCCCEEEEeC
Q 007593 542 VIVCWPNGEIMRLRSGSTAADAAMKVGL----EGKLVLVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 542 ~~vf~p~g~~~~lp~GaTv~D~a~~lgi----~~~~~~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
+.|++|+|.+.++|.|+|+.|+|+.++- .+..|.|||+.+.++++|++||+|+|++
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 3588999999999999999999999974 3799999999999999999999999974
No 14
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.69 E-value=6.1e-08 Score=76.46 Aligned_cols=55 Identities=45% Similarity=0.545 Sum_probs=49.9
Q ss_pred EEEccCCceEEcCCCCCHHHHHHHhCCc----ceEEEECCeecCCCCcCCCCCEEEEeC
Q 007593 543 IVCWPNGEIMRLRSGSTAADAAMKVGLE----GKLVLVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 543 ~vf~p~g~~~~lp~GaTv~D~a~~lgi~----~~~~~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
+||+|+|..+++|.|.|+.|++..++.. +..+.+||++++++++|.+||+|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 2 YVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 6999999999999999999999887643 677889999999999999999999863
No 15
>PRK01777 hypothetical protein; Validated
Probab=98.59 E-value=1.1e-07 Score=84.14 Aligned_cols=47 Identities=28% Similarity=0.316 Sum_probs=42.5
Q ss_pred ceEEcCCCCCHHHHHHHhCCc-----c----eEEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLE-----G----KLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~-----~----~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+++|+|+||.|++.++||. + .++.|||+++.++++|++||||+|.
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIy 74 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIY 74 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEe
Confidence 457899999999999999984 3 5899999999999999999999984
No 16
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=98.42 E-value=5.2e-07 Score=77.75 Aligned_cols=47 Identities=36% Similarity=0.419 Sum_probs=44.0
Q ss_pred ceEEcCCCCCHHHHHHHhCCc---ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLE---GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~---~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+.+++++|+.|++.+||+| |.+++|||+.+++++.|++||+|+|.
T Consensus 25 ~~~~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 25 FTHPFDGGATVKDVIESLGVPHTEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred eEEecCCCCcHHHHHHHcCCChHHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 457899999999999999997 99999999999999999999999974
No 17
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.33 E-value=6.2e-07 Score=76.19 Aligned_cols=48 Identities=33% Similarity=0.326 Sum_probs=40.7
Q ss_pred ceEEcCCCCCHHHHHHHhCCc----ceEEE-------ECCeecCCCCcCCCCCEEEEeC
Q 007593 550 EIMRLRSGSTAADAAMKVGLE----GKLVL-------VNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~----~~~~~-------VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
+.+.||.|+||.|+|+++|.+ .+.|. +|||.|.++++|+|||+|+|..
T Consensus 17 ~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 17 EPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 556789999999999999853 45555 4999999999999999999963
No 18
>PRK06437 hypothetical protein; Provisional
Probab=98.18 E-value=4.5e-06 Score=69.25 Aligned_cols=47 Identities=28% Similarity=0.399 Sum_probs=42.9
Q ss_pred ceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+.+++++|+|+.|++..||++ -..+.|||+.++.++.|++||+|+|+
T Consensus 13 ~~~~i~~~~tv~dLL~~Lgi~~~~vaV~vNg~iv~~~~~L~dgD~Veiv 61 (67)
T PRK06437 13 KTIEIDHELTVNDIIKDLGLDEEEYVVIVNGSPVLEDHNVKKEDDVLIL 61 (67)
T ss_pred eEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCceEcCCCCEEEEE
Confidence 679999999999999999997 34566999999999999999999986
No 19
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=98.17 E-value=4.9e-06 Score=67.97 Aligned_cols=52 Identities=37% Similarity=0.502 Sum_probs=45.8
Q ss_pred EccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 545 CWPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 545 f~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
++=||+.+++|+|.|+.|++.++|++ ...+.|||..++ .++.|++||+|+|+
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAREGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 45589999999999999999999986 344569998888 99999999999986
No 20
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.15 E-value=6.8e-06 Score=63.00 Aligned_cols=54 Identities=39% Similarity=0.474 Sum_probs=48.3
Q ss_pred EEccCCceEEcCCCCCHHHHHHHhCC----cceEEEECCeecCCCCcCCCCCEEEEeC
Q 007593 544 VCWPNGEIMRLRSGSTAADAAMKVGL----EGKLVLVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 544 vf~p~g~~~~lp~GaTv~D~a~~lgi----~~~~~~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
+..++|..+.+|.|+|+.|++..++. .+..+.|||+.++++++|.+||+|+++.
T Consensus 3 ~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 3 IFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 56788999999999999999999865 3688899999999999999999999863
No 21
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=98.14 E-value=4.8e-06 Score=68.14 Aligned_cols=50 Identities=38% Similarity=0.596 Sum_probs=45.7
Q ss_pred cCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCCC----CcCCCCCEEEEe
Q 007593 547 PNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLPN----TELKDGDIVEVR 596 (597)
Q Consensus 547 p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l~----t~L~dGD~V~i~ 596 (597)
=||+.+++|+|.|+.|+...++++ ...+.|||+.++.+ +.|++||+|+|+
T Consensus 4 iNg~~~~~~~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 4 VNGEPREVEEGATLAELLEELGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred ECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 389999999999999999999987 34677999999999 999999999986
No 22
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.12 E-value=3.3e-06 Score=71.94 Aligned_cols=48 Identities=27% Similarity=0.309 Sum_probs=39.9
Q ss_pred CceEEcCCCCCHHHHHHHhCCc-------ceEEEECCeecCCCCcCCCCCEEEEeC
Q 007593 549 GEIMRLRSGSTAADAAMKVGLE-------GKLVLVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 549 g~~~~lp~GaTv~D~a~~lgi~-------~~~~~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
++.+.||.|+|+.|+|++++-+ +..++ |||.++++++|+|||+|+|++
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 4566789999999999998643 22345 999999999999999999974
No 23
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=98.10 E-value=8.5e-06 Score=66.25 Aligned_cols=51 Identities=31% Similarity=0.376 Sum_probs=45.6
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCc-ceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLE-GKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~-~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
+=||+.+++|+|+|+.|+..+++++ -..+.|||+.++- ++.|++||+|+|+
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 4 QLNQQTLSLPDGATVADALAAYGARPPFAVAVNGDFVARTQHAARALAAGDRLDLV 59 (65)
T ss_pred EECCEEEECCCCCcHHHHHHhhCCCCCeEEEECCEEcCchhcccccCCCCCEEEEE
Confidence 4489999999999999999999986 4567999999986 7899999999986
No 24
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.09 E-value=1.2e-06 Score=70.98 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=43.1
Q ss_pred ccccc---ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeC
Q 007593 336 LFQKY---SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 336 vftPk---~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
+|+|. +.+|.|+|++|| ++.+|++|+| ||+ ++.++++|+.||.|+|+|
T Consensus 3 v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~V-----ng~--~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 3 VYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKV-----NGQ--LVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEE-----TTE--EEETTSBB-SSEEEEEEE
T ss_pred EECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEE-----cCE--ECCCCCCcCCCCEEEEEC
Confidence 67788 679999999999 6789999999 998 899999999999999987
No 25
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=98.07 E-value=9.7e-06 Score=67.59 Aligned_cols=46 Identities=37% Similarity=0.559 Sum_probs=43.1
Q ss_pred eEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 551 IMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
.+++++|+|+.|++..||++ ...+.|||+.++.++.|++||+|+|+
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~~~~v~v~vNg~iv~~~~~l~~gD~Veii 64 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFNTESAIAKVNGKVALEDDPVKDGDYVEVI 64 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCCcCcCCCCEEEEE
Confidence 78889999999999999996 67889999999999999999999986
No 26
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=97.94 E-value=2.1e-05 Score=65.75 Aligned_cols=51 Identities=41% Similarity=0.604 Sum_probs=47.2
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
.-||+-++++++.|+.|+...+|++ ...+.|||..+| .++.|++||+|+|.
T Consensus 6 ~~ng~~~e~~~~~tv~dLL~~l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv 62 (68)
T COG2104 6 QLNGKEVEIAEGTTVADLLAQLGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVV 62 (68)
T ss_pred EECCEEEEcCCCCcHHHHHHHhCCCCceEEEEECCEEccchhhhhccccCCCEEEEE
Confidence 3469999999999999999999997 678999999999 99999999999986
No 27
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=97.92 E-value=2.8e-05 Score=63.52 Aligned_cols=49 Identities=39% Similarity=0.548 Sum_probs=44.1
Q ss_pred CCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 548 NGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 548 ~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
||+.+++|+|.|+.|+...++++ ...+.|||+.++ .++.|++||+|+|+
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIV 58 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 89999999999999999999987 566889999996 44699999999986
No 28
>PRK07440 hypothetical protein; Provisional
Probab=97.86 E-value=3.9e-05 Score=64.26 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=48.9
Q ss_pred EEccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 544 VCWPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
.++=||+.+++|+|.|+.|+...++++ ...+-+||..+| .++.|++||+|+|+
T Consensus 6 ~i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 6 TLQVNGETRTCSSGTSLPDLLQQLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred EEEECCEEEEcCCCCCHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 566799999999999999999999987 567899999999 99999999999996
No 29
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=97.72 E-value=6.8e-05 Score=62.17 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=46.3
Q ss_pred ccCCceEEcCCC-CCHHHHHHHhCCc--ceEEEECCeecCCC----CcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSG-STAADAAMKVGLE--GKLVLVNGQLVLPN----TELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~G-aTv~D~a~~lgi~--~~~~~VNGr~~~l~----t~L~dGD~V~i~ 596 (597)
+=||+.++++++ +|+.|+...+|++ ...+-+||..+|-+ +.|++||+|+|+
T Consensus 4 ~vNG~~~~~~~~~~tv~~lL~~l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 4 KINGNQIEVPESVKTVAELLTHLELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIV 61 (67)
T ss_pred EECCEEEEcCCCcccHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 448999999999 7999999999997 45689999999999 999999999996
No 30
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=97.64 E-value=9.7e-05 Score=61.79 Aligned_cols=47 Identities=32% Similarity=0.392 Sum_probs=41.9
Q ss_pred ceEEcCCCCCHHHHHHHhCC----------cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGL----------EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi----------~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+++|+|+|+.|+...|+. +...++|||+.++.+++|++||+|+|.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~ 74 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAII 74 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEe
Confidence 45688999999999999863 367899999999999999999999985
No 31
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=97.63 E-value=0.00017 Score=59.41 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=46.1
Q ss_pred EccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 545 CWPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 545 f~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
++=||+.+++++|.|+.|+...++++ ...+-|||+.+| .++.|++||+|+|+
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 3 ILFNDQPMQCAAGQTVHELLEQLNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLF 60 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEE
Confidence 34489999999999999999999986 566799999999 66799999999986
No 32
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=97.51 E-value=0.00023 Score=58.25 Aligned_cols=50 Identities=30% Similarity=0.375 Sum_probs=43.9
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
+=||+.+++ ++.|+.|+...++++ ...+-|||+.+|. +++|+|||+|+|+
T Consensus 4 ~~Ng~~~~~-~~~tl~~Ll~~l~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 4 FVNGETLQT-EATTLALLLAELDYEGNWLATAVNGELVHKEARAQFVLHEGDRIEIL 59 (65)
T ss_pred EECCeEEEc-CcCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEE
Confidence 348999999 568999999999997 3458999999997 8999999999986
No 33
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=97.50 E-value=0.00018 Score=61.16 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=42.6
Q ss_pred CCceEEcCCCCCHHHHHHHhCC---------cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 548 NGEIMRLRSGSTAADAAMKVGL---------EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 548 ~g~~~~lp~GaTv~D~a~~lgi---------~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+++.+++|+|+|+.++...|+. ....+.|||+.++.+++|++||.|+|+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEe
Confidence 4578899999999999999953 234689999999999999999999986
No 34
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=97.43 E-value=9.6e-05 Score=64.27 Aligned_cols=45 Identities=36% Similarity=0.471 Sum_probs=30.1
Q ss_pred eEEcCCCCCHHHHHHHhCCc---------ceEEEECCeecCCCCcCCCCCEEEE
Q 007593 551 IMRLRSGSTAADAAMKVGLE---------GKLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~lgi~---------~~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
.++||+|+|+.|++.+-|+. .--+=|=|+.++++++|++||||||
T Consensus 17 ~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~~GDRVEI 70 (84)
T PF03658_consen 17 TLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLRDGDRVEI 70 (84)
T ss_dssp EEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B--TT-EEEE
T ss_pred EEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCCCCCEEEE
Confidence 46889999999999998762 2234567999999999999999998
No 35
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.40 E-value=0.00052 Score=52.88 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=46.2
Q ss_pred EEccCCceEEcCCCCCHHHHHHHhCC----cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 544 VCWPNGEIMRLRSGSTAADAAMKVGL----EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~~~lp~GaTv~D~a~~lgi----~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+-.|+|..+.+|.|+|+.|+++.+.. .+..+.|||+..+|+++|.+|+.|+++
T Consensus 3 i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i 59 (61)
T cd01667 3 ITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEII 59 (61)
T ss_pred EEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEE
Confidence 34577899999999999999998732 468899999999999999999999886
No 36
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=97.30 E-value=0.00035 Score=57.44 Aligned_cols=52 Identities=27% Similarity=0.266 Sum_probs=43.5
Q ss_pred EccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeec---CCCCcCCCCCEEEEe
Q 007593 545 CWPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLV---LPNTELKDGDIVEVR 596 (597)
Q Consensus 545 f~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~---~l~t~L~dGD~V~i~ 596 (597)
++=||+.+++|++.|+.|+...++++ -..+-+||..+ ..++.|++||+|+|+
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv 59 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDSLGFPEKGIAVAVDWSVLPRSDWATKLRDGARLEVV 59 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHHcCCCCCcEEEEECCcCcChhHhhhhcCCCCEEEEE
Confidence 45589999999999999999999997 45567787744 456789999999986
No 37
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.25 E-value=0.00013 Score=62.04 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=40.5
Q ss_pred ccccCCCCeeee-------cCCeeeeeEEE--EEccCCeEEeeeccccccCCceEEEeC
Q 007593 341 SSLKMGHPVIRV-------EGSNLLAAVII--RVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 341 ~~Lp~Gat~Ldf-------iG~~~~~AkV~--~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
..||.|+|+.|| ++.+|..|+|- ++..+|+ .|++++.|++||+|+|++
T Consensus 19 liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq--~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 19 VILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQ--RVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred EEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCe--ECCCCCEecCCCEEEEeC
Confidence 479999999999 67889999874 2333788 699999999999999985
No 38
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=97.11 E-value=0.00052 Score=56.88 Aligned_cols=47 Identities=36% Similarity=0.454 Sum_probs=42.5
Q ss_pred ceEEcCCCCCHHHHHHHhCC--------cceEEEECCeecCC---CCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGL--------EGKLVLVNGQLVLP---NTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi--------~~~~~~VNGr~~~l---~t~L~dGD~V~i~ 596 (597)
....++.|+|+.|+..+|+. +...+.|||+.++. +++|++||.|+|+
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEE
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEE
Confidence 56778999999999999974 35889999999999 9999999999985
No 39
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.09 E-value=0.00033 Score=59.75 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=41.4
Q ss_pred cccccccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeC
Q 007593 336 LFQKYSSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 336 vftPk~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
+|---..||.|+|++|| +|++|+.|.+ .. ||+ .+++++.|++||+|+|+|
T Consensus 20 ~~~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~--~k-~~~--~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 20 VLPDAFLLPKGSTARDLAYAIHTDIGDGFLHAID--AR-TGR--RVGEDYELKHRDVIKIVS 76 (76)
T ss_pred CccceEEECCCCCHHHHHHHHHHHHHhcceeeEE--ee-CCE--EeCCCcEecCCCEEEEeC
Confidence 44333589999999999 7899888865 22 788 799999999999999987
No 40
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=97.06 E-value=0.0022 Score=55.78 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=51.4
Q ss_pred CCceEEEEccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 538 PGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 538 ~~ev~~vf~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
..++.+-++=||+.+++++|.|+.|+...++++ ...+-|||..+|- ++.|++||+|+|+
T Consensus 14 ~~~~~m~I~VNG~~~~~~~~~tl~~LL~~l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv 78 (84)
T PRK06083 14 AAMVLITISINDQSIQVDISSSLAQIIAQLSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLF 78 (84)
T ss_pred CCCceEEEEECCeEEEcCCCCcHHHHHHHcCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEE
Confidence 456666788899999999999999999999997 3466899999985 6889999999996
No 41
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=96.93 E-value=0.0019 Score=54.75 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=40.2
Q ss_pred ceEEcCCC-CCHHHHHHHhCCc---------ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSG-STAADAAMKVGLE---------GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~G-aTv~D~a~~lgi~---------~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+++|.+ +|+.|+...|+.. ...+.|||+.+..+++|++||.|+|+
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEe
Confidence 46788876 9999999999432 34799999999999999999999985
No 42
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.0036 Score=55.54 Aligned_cols=47 Identities=34% Similarity=0.391 Sum_probs=37.4
Q ss_pred ceEEcCCCCCHHHHHHHhCCc-----c----eEEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLE-----G----KLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~-----~----~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+-+.+++|+||.|++.+=||- + --+=|=|+.+.+..+|+|||||||-
T Consensus 19 ~~v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIy 74 (99)
T COG2914 19 CRVQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIY 74 (99)
T ss_pred EEEEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEe
Confidence 346799999999999997652 1 1133558999999999999999984
No 43
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.38 E-value=0.0058 Score=52.11 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=38.6
Q ss_pred ceEEcCCCCCHHHHHHHhCCc----ceEEEECC-eecCCCCcCCCCCEEEEeC
Q 007593 550 EIMRLRSGSTAADAAMKVGLE----GKLVLVNG-QLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~----~~~~~VNG-r~~~l~t~L~dGD~V~i~~ 597 (597)
+-+-||.|+|+.|+|..++-+ -+-|.|-| |.+..+.+|+|||+|.|++
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 445679999999999999754 23345555 9999999999999999974
No 44
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=96.33 E-value=0.0073 Score=51.84 Aligned_cols=46 Identities=35% Similarity=0.452 Sum_probs=38.1
Q ss_pred ceEEcCCCCCHHHHHHHhCC-----------------cceEEEECCeecCCCC--cCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGL-----------------EGKLVLVNGQLVLPNT--ELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi-----------------~~~~~~VNGr~~~l~t--~L~dGD~V~i~ 596 (597)
..+++| |+|+.|+...|.- +...+.|||+.+..+. +|+|||.|.|+
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~ 82 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIF 82 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEe
Confidence 346677 9999999999842 1266999999998887 99999999985
No 45
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=96.05 E-value=0.019 Score=46.71 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=47.6
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCcceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
.=||+.+.+.+|+|+.++...++-+.-++-+||-.+.-+.+|++||.|.++
T Consensus 4 ~vN~k~~~~~~~~tl~~lr~~~k~~~DI~I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 4 KVNEKEIETEENTTLFELRKESKPDADIVILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred EECCEEEEcCCCcCHHHHHHhhCCCCCEEEEcCcccCCccccCCCCEEEEE
Confidence 348899999999999999999999988999999999999999999999875
No 46
>PRK09602 translation-associated GTPase; Reviewed
Probab=95.99 E-value=0.0061 Score=66.68 Aligned_cols=47 Identities=30% Similarity=0.380 Sum_probs=39.7
Q ss_pred ceEEcCCCCCHHHHHHHhCCc-------ceEEEECCeecCCCCcCCCCCEEEEeC
Q 007593 550 EIMRLRSGSTAADAAMKVGLE-------GKLVLVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~-------~~~~~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
+.+.||.|+||.|+|+.++-+ ...+. ++|.+.++++|+|||+|+|.+
T Consensus 341 ~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 341 DAFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred eeEEECCCCCHHHHHHHHHHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEe
Confidence 388899999999999998643 23344 899999999999999999863
No 47
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=95.71 E-value=0.026 Score=48.13 Aligned_cols=45 Identities=27% Similarity=0.215 Sum_probs=36.3
Q ss_pred EEc-CCCCCHHHHHHHhCC-----------cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 552 MRL-RSGSTAADAAMKVGL-----------EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 552 ~~l-p~GaTv~D~a~~lgi-----------~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+++ ++|+|+.|+...|.- ....+.||++.+.++|+|+|||.|+|+
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEe
Confidence 344 358999999998821 123689999999999999999999985
No 48
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=95.45 E-value=0.025 Score=50.08 Aligned_cols=41 Identities=29% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHhC-----C------------cceEEEECCeec----CCCCcCCCCCEEEEe
Q 007593 556 SGSTAADAAMKVG-----L------------EGKLVLVNGQLV----LPNTELKDGDIVEVR 596 (597)
Q Consensus 556 ~GaTv~D~a~~lg-----i------------~~~~~~VNGr~~----~l~t~L~dGD~V~i~ 596 (597)
.|+|+.|++..|. . +-.+++|||+.+ -++|+|++||.|.|+
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 6899999999982 1 246899999997 478999999999985
No 49
>PRK14707 hypothetical protein; Provisional
Probab=94.50 E-value=0.11 Score=65.93 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=82.9
Q ss_pred EEeecChHHHHHHHHh----cCCCC----cccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhc-ccCcCCcccccc
Q 007593 182 SSRLKSLYSIFSKMRR----KDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYI 252 (597)
Q Consensus 182 ~gRvK~~ySI~~Km~r----k~~~~----~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~-~~pip~r~kDyI 252 (597)
..|+|+..||.+|+.. ++.++ ..|.|.+-.-||+++. .++..+..+++.+... |..+ +++.+-
T Consensus 2308 e~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~------~Fva~~r~Il~aL~~qGy~~v--kvkN~F 2379 (2710)
T PRK14707 2308 QHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQ------GFTAGLRAVLAALDDQGHARV--KLTNQF 2379 (2710)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCch------hHHHHHHHHHHHHHHcCCeEE--EEeecc
Confidence 5699999999999973 45555 5799998888888763 3688888888777664 5443 456555
Q ss_pred cCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhcccc
Q 007593 253 VNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 301 (597)
Q Consensus 253 a~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~ 301 (597)
. .+.++|..+++++..|+|..+|||.=|..--..-+. .|=.||+.
T Consensus 2380 ~-~~~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2380 T-EYSPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred c-CCCCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 3 346789999999999999999999999876666654 46689974
No 50
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=93.96 E-value=0.11 Score=59.94 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=48.9
Q ss_pred EEEEccCCceEEcCCCCCHHHHHHHhCC----cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 542 VIVCWPNGEIMRLRSGSTAADAAMKVGL----EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~~~lp~GaTv~D~a~~lgi----~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+.|.-|+|.+.++|.|+|+.|+|+.+.. ++.+|+|||++.+|++++.++..|+++
T Consensus 6 i~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv 64 (639)
T PRK12444 6 IEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEII 64 (639)
T ss_pred eEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEe
Confidence 4577788999999999999999999854 378999999999999999999999876
No 51
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=93.86 E-value=0.058 Score=42.25 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=37.4
Q ss_pred ccccc---ccccCCCCeeeec-------CCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeC
Q 007593 336 LFQKY---SSLKMGHPVIRVE-------GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 336 vftPk---~~Lp~Gat~Ldfi-------G~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
+|.|. ..+|.|.|+.++. ...++++.+ ||+ ++++++.|..||.|+++|
T Consensus 3 ~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~v-----ng~--~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKV-----NGK--LVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEE-----CCE--ECCCCCCCCCCCEEEEEC
Confidence 56666 5788999987752 235566665 899 799999999999999875
No 52
>PLN02908 threonyl-tRNA synthetase
Probab=91.52 E-value=0.94 Score=53.16 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=48.2
Q ss_pred ceEEEEccCCceEEcC-CCCCHHHHHHHhCC----cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 540 EVVIVCWPNGEIMRLR-SGSTAADAAMKVGL----EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 540 ev~~vf~p~g~~~~lp-~GaTv~D~a~~lgi----~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+.+.|.-|+|.+.+.| .|+|+.|+|+.++. .+.+|.|||++.+|+++|..+..|+++
T Consensus 50 ~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l 111 (686)
T PLN02908 50 DPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLF 111 (686)
T ss_pred CceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEeecCccccCCCeeEEe
Confidence 3344566989999998 56999999999864 388999999999999999988888875
No 53
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=90.85 E-value=0.22 Score=37.70 Aligned_cols=43 Identities=23% Similarity=0.450 Sum_probs=34.5
Q ss_pred ccccCCCCeeeec-------CCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeC
Q 007593 341 SSLKMGHPVIRVE-------GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 341 ~~Lp~Gat~Ldfi-------G~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
..+|.|.|+.|+. ....++++| ||+ ++++++.|..||.|+++|
T Consensus 11 ~~~~~g~t~~~~~~~~~~~~~~~~~~~~v-----n~~--~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 11 VELPKGATAMDFALKIHTDLGKGFIGALV-----NGQ--LVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--ECCCCcCcCCCCEEEEeC
Confidence 4678899988862 345567776 888 799999999999999875
No 54
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=89.45 E-value=0.24 Score=53.27 Aligned_cols=45 Identities=42% Similarity=0.506 Sum_probs=38.4
Q ss_pred EEcCCCCCHHHHHHHhCCc-----------ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 552 MRLRSGSTAADAAMKVGLE-----------GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 552 ~~lp~GaTv~D~a~~lgi~-----------~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+-|..|+||.|++++++-. .+-+.-+||.|-++.+|.|||+|+|.
T Consensus 308 lIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 308 LILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIH 363 (365)
T ss_pred eEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEe
Confidence 4478999999999999732 35577889999999999999999986
No 55
>PRK09602 translation-associated GTPase; Reviewed
Probab=89.40 E-value=0.14 Score=56.15 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=40.0
Q ss_pred ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCC
Q 007593 341 SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 341 ~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
..+|.|+|+.|| +|.+|+.|.. +. +++ .++.++.|+.||+|+|+|++
T Consensus 343 ~~l~~g~t~~d~A~~IH~d~~~~fi~A~~--~~-~~~--~~g~~~~l~dgDiv~i~~~~ 396 (396)
T PRK09602 343 FLLPKGSTARDLAYKIHTDIGEGFLYAID--AR-TKR--RIGEDYELKDGDVIKIVSTA 396 (396)
T ss_pred EEECCCCCHHHHHHHHHHHHHhhceehhc--cc-CCc--ccCCCcEecCCCEEEEEeCC
Confidence 579999999999 7888888874 22 567 79999999999999999864
No 56
>PRK09169 hypothetical protein; Validated
Probab=89.22 E-value=2.4 Score=55.07 Aligned_cols=109 Identities=24% Similarity=0.344 Sum_probs=79.4
Q ss_pred EEEeecChHHHHHHHH----hcCCCC----cccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhc-ccCcCCccccc
Q 007593 181 LSSRLKSLYSIFSKMR----RKDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDY 251 (597)
Q Consensus 181 V~gRvK~~ySI~~Km~----rk~~~~----~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~-~~pip~r~kDy 251 (597)
...|+|+..|+.+|+. +++.++ ..|.|..-.-|++++. .++..+..+++.+-.. |..+ +++.+
T Consensus 1916 le~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~------~Fva~~r~iv~~L~~~G~~~V--kv~N~ 1987 (2316)
T PRK09169 1916 LAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQ------TFVAGYRRILGALDEQGHTRT--RVTNH 1987 (2316)
T ss_pred hHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCc------cHHHHHHHHHHHHHhCCCeEE--EEEee
Confidence 3569999999999998 445554 4689987777777652 4678888888877664 4443 34443
Q ss_pred ccCCCCCCcceeEEEE-EcCCCceEEEEEeehhhHHHHHhhhhhhhhcccc
Q 007593 252 IVNPKPSGYQSLHTAV-QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 301 (597)
Q Consensus 252 Ia~PK~nGYqSLHttV-~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~ 301 (597)
-.. ..++|..+|+++ ..++|..+|||.=|..=-..-+. -|-.||..
T Consensus 1988 F~~-~~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1988 FKK-RGPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred ecc-CCCCccceEEeeecCCCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 222 258999999999 66789999999999876665554 46689974
No 57
>PTZ00258 GTP-binding protein; Provisional
Probab=88.89 E-value=0.66 Score=51.07 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=42.6
Q ss_pred EEEEcc---CCceEEcCCCCCHHHHHHHhCCcc----eEEEE-----------------CC--eecCCCCcCCCCCEEEE
Q 007593 542 VIVCWP---NGEIMRLRSGSTAADAAMKVGLEG----KLVLV-----------------NG--QLVLPNTELKDGDIVEV 595 (597)
Q Consensus 542 ~~vf~p---~g~~~~lp~GaTv~D~a~~lgi~~----~~~~V-----------------NG--r~~~l~t~L~dGD~V~i 595 (597)
+.+||- .-+...+|.|+|+.|+|..++-+. .=|.| -| |..--+++++|||+|++
T Consensus 305 i~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f 384 (390)
T PTZ00258 305 IHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFF 384 (390)
T ss_pred EEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEE
Confidence 336662 236788999999999999998651 11333 36 89999999999999999
Q ss_pred eC
Q 007593 596 RV 597 (597)
Q Consensus 596 ~~ 597 (597)
+.
T Consensus 385 ~f 386 (390)
T PTZ00258 385 KF 386 (390)
T ss_pred Ee
Confidence 73
No 58
>PRK01777 hypothetical protein; Validated
Probab=88.07 E-value=0.4 Score=42.78 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=34.4
Q ss_pred ccccCCCCeeee---cCC--e-----eeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGS--N-----LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~--~-----~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
.++|.|+|+-|. .|- . +.. .++.| ||+ .+.+.+.|+.||+|||+.|=.
T Consensus 21 l~vp~GtTv~dal~~sgi~~~~pei~~~~-~~vgI--~Gk--~v~~d~~L~dGDRVeIyrPL~ 78 (95)
T PRK01777 21 LTLQEGATVEEAIRASGLLELRTDIDLAK-NKVGI--YSR--PAKLTDVLRDGDRVEIYRPLL 78 (95)
T ss_pred EEcCCCCcHHHHHHHcCCCccCccccccc-ceEEE--eCe--ECCCCCcCCCCCEEEEecCCC
Confidence 579999998665 231 1 111 22234 689 899999999999999998765
No 59
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=86.85 E-value=0.73 Score=36.92 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=23.3
Q ss_pred cceEEEECCeec-CCCCcCCCCCEEEE
Q 007593 570 EGKLVLVNGQLV-LPNTELKDGDIVEV 595 (597)
Q Consensus 570 ~~~~~~VNGr~~-~l~t~L~dGD~V~i 595 (597)
.-..++|||+.+ .+++.|+.||+|.|
T Consensus 32 ~~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 32 QENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HcCCEEECCEEccCCCCCCCCCCEEEe
Confidence 357799999999 88999999999986
No 60
>PRK14707 hypothetical protein; Provisional
Probab=85.94 E-value=2 Score=55.46 Aligned_cols=103 Identities=23% Similarity=0.330 Sum_probs=76.1
Q ss_pred cChHHHHHHHHhc---CCC----CcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhc-ccCcCCcccccccCCCC
Q 007593 186 KSLYSIFSKMRRK---DVG----IHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYIVNPKP 257 (597)
Q Consensus 186 K~~ySI~~Km~rk---~~~----~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~-~~pip~r~kDyIa~PK~ 257 (597)
|++.||.+|+.+. +++ +..|.|.+-.-||.+.. .++...+.+.+.+... |+.+ ++|.+-..| .
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~e------~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d 2614 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPSE------GFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-D 2614 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCcc------hHHHHHHHHHHHHHhcCCeEE--EeeccccCC-C
Confidence 9999999999864 443 34688987777777652 3677788888776654 6654 677776543 5
Q ss_pred CCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccc
Q 007593 258 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 300 (597)
Q Consensus 258 nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~ 300 (597)
+.|..+-++++.++|..+|||.=|..--..-+. .|-.|+.
T Consensus 2615 ~tY~GvN~~~r~~~g~~FEIQFHT~~Sf~~K~~---tH~lYek 2654 (2710)
T PRK14707 2615 GTYRGINASFTDAEGYAFEVQFHTAESFNAKAQ---THLSYKR 2654 (2710)
T ss_pred CcccceeeeEEcCCCCeEEEEeccHHHHHHHHH---hHHHHHh
Confidence 679999999998999999999999765444443 4667875
No 61
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=85.13 E-value=0.93 Score=36.84 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=31.8
Q ss_pred ccccCCCCeeee---cC--CeeeeeEEEEEccCCeEEeee----ccccccCCceEEEeCCC
Q 007593 341 SSLKMGHPVIRV---EG--SNLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRPS 392 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG--~~~~~AkV~~v~~ng~~~lv~----l~~~L~~gD~Vei~T~k 392 (597)
.++|.|.|+.|+ .| ...++..| ||. ++| .++.|+.||+|||++.-
T Consensus 10 ~~~~~~~tl~~lL~~l~~~~~~vav~v-----Ng~--iv~r~~~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 10 RELPDGESVAALLAREGLAGRRVAVEV-----NGE--IVPRSQHASTALREGDVVEIVHAL 63 (66)
T ss_pred EEcCCCCCHHHHHHhcCCCCCeEEEEE-----CCe--EeCHHHcCcccCCCCCEEEEEEEe
Confidence 367788887655 33 23333333 787 677 99999999999999864
No 62
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=84.04 E-value=0.56 Score=41.10 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=22.6
Q ss_pred ccccCCCCeeee----------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV----------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf----------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
..+|.|+|+.+- -+-.+...+| .| =|| .+++++.|+.||+|||.+|=-
T Consensus 18 l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~v-GI--fGk--~~~~d~~L~~GDRVEIYRPL~ 75 (84)
T PF03658_consen 18 LEVPEGTTVAQAIEASGILEQFPEIDLEKNKV-GI--FGK--LVKLDTVLRDGDRVEIYRPLT 75 (84)
T ss_dssp EEEETT-BHHHHHHHHTHHHH-TT--TTTSEE-EE--EE---S--TT-B--TT-EEEEE-S--
T ss_pred EECCCcCcHHHHHHHcCchhhCcccCccccee-ee--eee--EcCCCCcCCCCCEEEEeccCc
Confidence 479999998553 1111112222 22 268 799999999999999998744
No 63
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=82.96 E-value=1.2 Score=33.88 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=34.5
Q ss_pred ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeC
Q 007593 341 SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 341 ~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
..+|.|.|+.|+ .+...++|+| ||+ ++.|.+.+..++.|+.++
T Consensus 11 ~~~~~~~t~~~~~~~~~~~~~~~~v~~~v-----ng~--~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 11 KEFPKGTTPLDIAKSISPGLAKKAVAAKV-----NGE--LVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--EecCCcCcCCCCEEEEEe
Confidence 457888888875 2456678887 899 799999999999998875
No 64
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=82.69 E-value=1.3 Score=38.33 Aligned_cols=43 Identities=33% Similarity=0.214 Sum_probs=33.9
Q ss_pred cCCCCCHHHHHHHhC---------C---cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 554 LRSGSTAADAAMKVG---------L---EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 554 lp~GaTv~D~a~~lg---------i---~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
...|+|+.++...+. . .+..+.+|-.+++++|+|+|||.|.|+
T Consensus 24 ~~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~t~L~dGDeVa~~ 78 (84)
T COG1977 24 LTVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGLDTPLKDGDEVAFF 78 (84)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccccccCCCCCEEEEe
Confidence 345888888888762 1 246677889999999999999999985
No 65
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=81.43 E-value=1.2 Score=33.90 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.0
Q ss_pred ceEEEECCeecC-CCCcCCCCCEE
Q 007593 571 GKLVLVNGQLVL-PNTELKDGDIV 593 (597)
Q Consensus 571 ~~~~~VNGr~~~-l~t~L~dGD~V 593 (597)
-..++|||+.+. +++.++.||+|
T Consensus 25 ~g~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TTTEEETTEEESSTTSBESTTEEE
T ss_pred CCEEEECCEEEcCCCCCCCCcCCC
Confidence 356999999999 99999999987
No 66
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=80.43 E-value=3.5 Score=35.39 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=38.2
Q ss_pred EEEEccCCceEEcCCCCCHHHHHHHhCCc---------------------ceEEEECCee-c-CCCCcCCCCCEEE
Q 007593 542 VIVCWPNGEIMRLRSGSTAADAAMKVGLE---------------------GKLVLVNGQL-V-LPNTELKDGDIVE 594 (597)
Q Consensus 542 ~~vf~p~g~~~~lp~GaTv~D~a~~lgi~---------------------~~~~~VNGr~-~-~l~t~L~dGD~V~ 594 (597)
.|-|+=||+.+..++|.|+++++.+.|+. .=+|.|||+. + .=.|++++|-+|.
T Consensus 3 ~v~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~ 78 (82)
T PF13510_consen 3 MVTITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVE 78 (82)
T ss_dssp EEEEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE
T ss_pred EEEEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEE
Confidence 34678899999999999999999999863 1258999987 3 3468889998875
No 67
>smart00363 S4 S4 RNA-binding domain.
Probab=80.09 E-value=1.8 Score=32.55 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=22.9
Q ss_pred ceEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
.+.++|||+.+ .+++.|+.||+|.+.
T Consensus 25 ~g~i~vng~~~~~~~~~l~~gd~i~~~ 51 (60)
T smart00363 25 QGRVKVNGKKVTKPSYIVKPGDVISVR 51 (60)
T ss_pred cCCEEECCEEecCCCeEeCCCCEEEEc
Confidence 45689999999 999999999999874
No 68
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=79.44 E-value=2.3 Score=38.23 Aligned_cols=46 Identities=28% Similarity=0.203 Sum_probs=34.0
Q ss_pred eEEcC---CCCCHHHHHHHhCC-----------------cceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 551 IMRLR---SGSTAADAAMKVGL-----------------EGKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 551 ~~~lp---~GaTv~D~a~~lgi-----------------~~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
.+.|| ...|+.|++..+-- |..+|+||+.--.+ +++|++||.|.++
T Consensus 21 ~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~Fi 90 (96)
T PF09138_consen 21 KVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFI 90 (96)
T ss_dssp EEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEE
T ss_pred EEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEE
Confidence 55666 88999999998731 47899999987654 8999999999885
No 69
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=78.61 E-value=1.8 Score=35.25 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=30.2
Q ss_pred cccCCCCeeee---cCC--eeeeeEEEEEccCCeEEeeecc----ccccCCceEEEeCCCC
Q 007593 342 SLKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVAVS----FGLAASEVVADRRPSF 393 (597)
Q Consensus 342 ~Lp~Gat~Ldf---iG~--~~~~AkV~~v~~ng~~~lv~l~----~~L~~gD~Vei~T~k~ 393 (597)
++|.+.|+-++ .|. ..++..| ||+ +++-+ +.|+.||+|+++++-+
T Consensus 10 ~~~~~~tv~~ll~~l~~~~~~i~V~v-----Ng~--~v~~~~~~~~~L~~gD~V~ii~~v~ 63 (65)
T cd00565 10 EVEEGATLAELLEELGLDPRGVAVAL-----NGE--IVPRSEWASTPLQDGDRIEIVTAVG 63 (65)
T ss_pred EcCCCCCHHHHHHHcCCCCCcEEEEE-----CCE--EcCHHHcCceecCCCCEEEEEEecc
Confidence 56667776443 322 2222223 789 78988 8999999999998743
No 70
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=78.23 E-value=1.6 Score=50.35 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=41.9
Q ss_pred ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCCC
Q 007593 341 SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 394 (597)
Q Consensus 341 ~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~p 394 (597)
..+|.|.|++|+ .++.+++|+| ||+ +++|++.+..++.|+++|...+
T Consensus 12 ~~~~~gtt~~dia~~~~~~~~~~~v~a~v-----ng~--l~dL~~~l~~d~~Vefi~~~~~ 65 (638)
T PRK00413 12 REFEAGVTVADVAASISPGLAKAAVAGKV-----NGE--LVDLSTPIEEDASLEIITAKDE 65 (638)
T ss_pred EEeCCCCCHHHHHHHhhhhchhheEEEEE-----CCE--EeeCCccccCCCceeeeeccch
Confidence 468999999998 4689999999 999 8999999999999999997775
No 71
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=78.14 E-value=2.3 Score=38.52 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.8
Q ss_pred ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..=+.|||+.+.+++.++.||++.|+
T Consensus 33 ~GrV~vNG~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 33 GGRVKVNGQRAKPSKEVKVGDILTIR 58 (100)
T ss_pred CCeEEECCEEcccccccCCCCEEEEE
Confidence 45689999999999999999999986
No 72
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=77.43 E-value=2.8 Score=34.92 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=32.2
Q ss_pred ccccCCCCeeee---cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCC
Q 007593 341 SSLKMGHPVIRV---EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
.+++.|.|+-|+ .|....+ .+ |..||+ +++-++.|+.||.|+++++-
T Consensus 18 ~~~~~~~tv~~ll~~l~~~~~~-v~--v~vNg~--iv~~~~~l~~gD~Veii~~V 67 (70)
T PRK08364 18 IEWRKGMKVADILRAVGFNTES-AI--AKVNGK--VALEDDPVKDGDYVEVIPVV 67 (70)
T ss_pred EEcCCCCcHHHHHHHcCCCCcc-EE--EEECCE--ECCCCcCcCCCCEEEEEccc
Confidence 466788887655 3332211 22 222788 78999999999999999864
No 73
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=76.82 E-value=6.4 Score=34.70 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=31.6
Q ss_pred EE-ccCC--ceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeec
Q 007593 544 VC-WPNG--EIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLV 581 (597)
Q Consensus 544 vf-~p~g--~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~ 581 (597)
.| +|+| ..+.+++|.|+.|++.+.|++ |++-.+.|...
T Consensus 6 ~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~ 58 (97)
T TIGR02008 6 TLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVD 58 (97)
T ss_pred EEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEe
Confidence 44 7888 899999999999999999974 67777888654
No 74
>PRK07440 hypothetical protein; Provisional
Probab=75.12 E-value=3.3 Score=34.68 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=31.8
Q ss_pred ccccCCCCeeee---cCC--eeeeeEEEEEccCCeEEeee----ccccccCCceEEEeCCC
Q 007593 341 SSLKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRPS 392 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~--~~~~AkV~~v~~ng~~~lv~----l~~~L~~gD~Vei~T~k 392 (597)
.++|.|.|+.|+ .|. .-++..+ ||. ++| -++.|+.||.|||++.-
T Consensus 14 ~~~~~~~tl~~lL~~l~~~~~~vav~~-----N~~--iv~r~~w~~~~L~~gD~IEIv~~v 67 (70)
T PRK07440 14 RTCSSGTSLPDLLQQLGFNPRLVAVEY-----NGE--ILHRQFWEQTQVQPGDRLEIVTIV 67 (70)
T ss_pred EEcCCCCCHHHHHHHcCCCCCeEEEEE-----CCE--EeCHHHcCceecCCCCEEEEEEEe
Confidence 467788887655 232 2222332 788 899 88999999999999853
No 75
>PRK06437 hypothetical protein; Provisional
Probab=74.68 E-value=3.2 Score=34.46 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=32.2
Q ss_pred ccccCCCCeeee---cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
..++.|.|+-|+ .|-.-.+. + |.-||+ .+|.++.|+.||.|+|+++-+
T Consensus 15 ~~i~~~~tv~dLL~~Lgi~~~~v-a--V~vNg~--iv~~~~~L~dgD~Veiv~~V~ 65 (67)
T PRK06437 15 IEIDHELTVNDIIKDLGLDEEEY-V--VIVNGS--PVLEDHNVKKEDDVLILEVFS 65 (67)
T ss_pred EEcCCCCcHHHHHHHcCCCCccE-E--EEECCE--ECCCceEcCCCCEEEEEeccc
Confidence 467788887654 33221111 1 112889 799999999999999998643
No 76
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=74.59 E-value=3 Score=35.08 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=31.2
Q ss_pred ccccCCCCeeee---cCC--eeeeeEEEEEccCCeEEeee----ccccccCCceEEEeCC
Q 007593 341 SSLKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 391 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~--~~~~AkV~~v~~ng~~~lv~----l~~~L~~gD~Vei~T~ 391 (597)
..++.+.|+-|+ .|- +-++..+ ||. .+| ..+.|++||+|+|++.
T Consensus 12 ~e~~~~~tv~dLL~~l~~~~~~vav~v-----Ng~--iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 12 VEIAEGTTVADLLAQLGLNPEGVAVAV-----NGE--IVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred EEcCCCCcHHHHHHHhCCCCceEEEEE-----CCE--EccchhhhhccccCCCEEEEEEe
Confidence 456677776554 332 3333333 889 899 9999999999999975
No 77
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=73.28 E-value=2.7 Score=35.88 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=35.0
Q ss_pred ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeC
Q 007593 341 SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 341 ~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
..||.|+|+.|+ +....+.|.|. +++ .+..++.|+.||+|.|.+
T Consensus 26 ~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~----~~~--~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 26 VLVKKGTTVGDVARKIHGDLEKGFIEAVGG----RRR--LEGKDVILGKNDILKFKT 76 (76)
T ss_pred EEEcCCCCHHHHHHHHhHHHHhccEEEEEc----cCE--EECCCEEecCCCEEEEEC
Confidence 478899999888 44566778873 135 699999999999999975
No 78
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=72.20 E-value=2.2 Score=34.25 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=20.1
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||++.|
T Consensus 42 ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 42 NGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp S-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred CcEEECCEEcCCCCEEECCCCCEEEc
Confidence 578999999999 899999999976
No 79
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=70.36 E-value=4.8 Score=32.49 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=30.4
Q ss_pred ccccCCCCeeee---cCCeeeeeEEEEEccCCeEEeeec----cccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGSNLLAAVIIRVEKGGRELLVAV----SFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~~~~~AkV~~v~~ng~~~lv~l----~~~L~~gD~Vei~T~k~ 393 (597)
.++|.|.|+.++ .|.. ...++.| ||+ ++|- ++.|+.||+|+|+++-+
T Consensus 10 ~~~~~~~tl~~ll~~l~~~--~~~~v~v--N~~--~v~~~~~~~~~L~~gD~vei~~~v~ 63 (65)
T PRK06944 10 LSLPDGATVADALAAYGAR--PPFAVAV--NGD--FVARTQHAARALAAGDRLDLVQPVA 63 (65)
T ss_pred EECCCCCcHHHHHHhhCCC--CCeEEEE--CCE--EcCchhcccccCCCCCEEEEEeecc
Confidence 357777776544 3332 1223233 778 5664 67899999999998754
No 80
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=68.84 E-value=30 Score=27.83 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=39.3
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
++|=+++|+. +++++..|+.++-.++ |++ .++. .||+...-+. -+++|++|.++
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 3 IKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLI-YSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 3467777764 5668999999998776 776 3555 4898776443 47899998875
No 81
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=68.67 E-value=5.8 Score=30.63 Aligned_cols=26 Identities=46% Similarity=0.740 Sum_probs=22.6
Q ss_pred ceEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
-+.++|||+.+ .+++.++.||+|.+.
T Consensus 25 ~g~V~vn~~~~~~~~~~v~~~d~i~i~ 51 (70)
T cd00165 25 HGHVLVNGKVVTKPSYKVKPGDVIEVD 51 (70)
T ss_pred cCCEEECCEEccCCccCcCCCCEEEEc
Confidence 45689999999 999999999998763
No 82
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=67.79 E-value=3 Score=33.95 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=29.3
Q ss_pred ccccCCCCeeee---cCCeeeeeEEEEEccCCeEEeee----ccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGSNLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~~~~~AkV~~v~~ng~~~lv~----l~~~L~~gD~Vei~T~k~ 393 (597)
.++|.|.|+.|+ .|..- ...++.| ||+ ++| -++.|+.||+|+|+++-+
T Consensus 8 ~~~~~~~tv~~ll~~l~~~~-~~v~v~v--N~~--iv~~~~~~~~~L~~gD~veii~~V~ 62 (64)
T TIGR01683 8 VEVEDGLTLAALLESLGLDP-RRVAVAV--NGE--IVPRSEWDDTILKEGDRIEIVTFVG 62 (64)
T ss_pred EEcCCCCcHHHHHHHcCCCC-CeEEEEE--CCE--EcCHHHcCceecCCCCEEEEEEecc
Confidence 356777776554 33221 1222223 778 565 346899999999998743
No 83
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=65.97 E-value=6.5 Score=32.24 Aligned_cols=24 Identities=0% Similarity=-0.053 Sum_probs=19.5
Q ss_pred CCeEEeee----ccccccCCceEEEeCCCC
Q 007593 368 GGRELLVA----VSFGLAASEVVADRRPSF 393 (597)
Q Consensus 368 ng~~~lv~----l~~~L~~gD~Vei~T~k~ 393 (597)
|++ ++| =++.|+.||+|+|+++-+
T Consensus 37 N~~--iv~r~~w~~~~L~~gD~Ieii~~v~ 64 (66)
T PRK08053 37 NQQ--IIPREQWAQHIVQDGDQILLFQVIA 64 (66)
T ss_pred CCE--EeChHHcCccccCCCCEEEEEEEcc
Confidence 788 778 556899999999998643
No 84
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=64.27 E-value=6.2 Score=32.12 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.4
Q ss_pred CCeEEeeec----cccccCCceEEEeCCCC
Q 007593 368 GGRELLVAV----SFGLAASEVVADRRPSF 393 (597)
Q Consensus 368 ng~~~lv~l----~~~L~~gD~Vei~T~k~ 393 (597)
|++ ++|- ++.|+.||+|+|+++-+
T Consensus 36 N~~--iv~~~~~~~~~L~dgD~Ieiv~~V~ 63 (65)
T PRK06488 36 NGE--LVHKEARAQFVLHEGDRIEILSPMQ 63 (65)
T ss_pred CCE--EcCHHHcCccccCCCCEEEEEEecc
Confidence 788 7887 77999999999998743
No 85
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=61.72 E-value=15 Score=43.88 Aligned_cols=56 Identities=32% Similarity=0.447 Sum_probs=45.9
Q ss_pred ceEEEEccCCceEEcCCCCCHHHHHHHhCCc---------------c--eEEEECCeecC-CCCcCCCCCEEEE
Q 007593 540 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE---------------G--KLVLVNGQLVL-PNTELKDGDIVEV 595 (597)
Q Consensus 540 ev~~vf~p~g~~~~lp~GaTv~D~a~~lgi~---------------~--~~~~VNGr~~~-l~t~L~dGD~V~i 595 (597)
+..+..+=+|+-+.+++|+|+.+++.+.||. | =+|-|||+++. =.|++.+|..|..
T Consensus 3 ~~~i~vtidg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t 76 (978)
T COG3383 3 EKMITVTIDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRT 76 (978)
T ss_pred ceeEEEEECCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEec
Confidence 3445778899999999999999999999973 2 35779999775 4799999998853
No 86
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=59.49 E-value=7 Score=27.09 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=33.4
Q ss_pred eEEcCCCCCHHHHHHHhCCc-ceEEEECCeecCCCCcCCCCCEEEE
Q 007593 551 IMRLRSGSTAADAAMKVGLE-GKLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~lgi~-~~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
.+.+..|.|+.+++.+.|+. ..+...|+. .....++.|+++.|
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~~--~~~~~~~~g~~l~i 45 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISVEELLKLNGL--SDPDNLQVGQKLKI 45 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCHHHHHHHcCC--CCccccCCCCEEec
Confidence 35678999999999999987 466777776 33457888998754
No 87
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=59.01 E-value=5.9 Score=43.42 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=34.6
Q ss_pred ceEEcCCCCCHHHHHHHhCCcceEEEE-----------------C----Ce--ecCCCCcCCCCCEEEEeC
Q 007593 550 EIMRLRSGSTAADAAMKVGLEGKLVLV-----------------N----GQ--LVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~~~~~~V-----------------N----Gr--~~~l~t~L~dGD~V~i~~ 597 (597)
+...++.|+|+.++|..++-+..=-|| + |. +.--++.++|||++.|+.
T Consensus 292 rawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~f 362 (364)
T PRK09601 292 RAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRF 362 (364)
T ss_pred EEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEc
Confidence 577899999999999999865211111 1 22 334689999999999873
No 88
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.43 E-value=6.5 Score=35.40 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=34.1
Q ss_pred ccccCCCCeeee----------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV----------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf----------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
.+++.|+||-|- .+-.+..++| .|- || .+.+...|+.||+|||..|--
T Consensus 21 v~v~egatV~dAi~~Sgll~~~~~idl~~n~~-GI~--~k--~~kl~~~l~dgDRVEIyRPLl 78 (99)
T COG2914 21 VQLQEGATVEDAILASGLLELFPDIDLHENKV-GIY--SK--PVKLDDELHDGDRVEIYRPLL 78 (99)
T ss_pred EEeccCcCHHHHHHhcchhhccccCCccccce-eEE--cc--ccCccccccCCCEEEEecccc
Confidence 578999998654 2333334454 222 46 689999999999999998865
No 89
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=58.18 E-value=9.9 Score=31.49 Aligned_cols=23 Identities=0% Similarity=-0.091 Sum_probs=20.0
Q ss_pred CCeEEeeecc----ccccCCceEEEeCCC
Q 007593 368 GGRELLVAVS----FGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~l~----~~L~~gD~Vei~T~k 392 (597)
||. ++|=+ +.|+.||+|||++.-
T Consensus 38 N~~--iv~r~~w~~~~L~~gD~iEIv~~V 64 (67)
T PRK07696 38 NKD--ILQKDDHTDTSVFDGDQIEIVTFV 64 (67)
T ss_pred CCE--EeCHHHcCceecCCCCEEEEEEEe
Confidence 788 78888 889999999999853
No 90
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=57.31 E-value=33 Score=29.43 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=36.9
Q ss_pred EEEccCCceEEcCC-CCCHHHHHHHhCCc------------ceEEEECCeecCCC---CcCCCCCE
Q 007593 543 IVCWPNGEIMRLRS-GSTAADAAMKVGLE------------GKLVLVNGQLVLPN---TELKDGDI 592 (597)
Q Consensus 543 ~vf~p~g~~~~lp~-GaTv~D~a~~lgi~------------~~~~~VNGr~~~l~---t~L~dGD~ 592 (597)
+.|.++|..+++++ |.|+.|++.+-|++ |+.-.+.|..-..+ ..+++|.+
T Consensus 4 v~~~~~~~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~~~~~~~g~~ 69 (84)
T PRK10713 4 VTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEI 69 (84)
T ss_pred EEEEeCCcEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCccchhhCCEE
Confidence 46789999999986 59999999999874 66677788754322 24666654
No 91
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=55.25 E-value=27 Score=37.41 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=38.3
Q ss_pred cCCceEEc-CCCCCHHHHHHHhCCc---------------ceE--EEECCee---cCCCCcCCCCCEEEE
Q 007593 547 PNGEIMRL-RSGSTAADAAMKVGLE---------------GKL--VLVNGQL---VLPNTELKDGDIVEV 595 (597)
Q Consensus 547 p~g~~~~l-p~GaTv~D~a~~lgi~---------------~~~--~~VNGr~---~~l~t~L~dGD~V~i 595 (597)
=||+-+++ |+|.|+.|+|++.||. |.+ |.|+|+. ..=.|+.++|=.|.-
T Consensus 73 IDGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T 142 (297)
T PTZ00305 73 VNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIIT 142 (297)
T ss_pred ECCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEe
Confidence 39999999 9999999999999873 344 5667863 345788899988753
No 92
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=54.92 E-value=75 Score=22.61 Aligned_cols=47 Identities=34% Similarity=0.474 Sum_probs=34.2
Q ss_pred ceEEcCCCCCHHHHHHHh----CCc--ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKV----GLE--GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~l----gi~--~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
..+.++.+.|+.++...+ |.+ .--.++||....... .+++|++|.+.
T Consensus 10 ~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 10 VELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 455667799999998876 443 344567887776554 78999999875
No 93
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=53.26 E-value=47 Score=29.97 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=24.2
Q ss_pred EccCCceEEcCCCCCHHHHHHHhCCc
Q 007593 545 CWPNGEIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 545 f~p~g~~~~lp~GaTv~D~a~~lgi~ 570 (597)
|.|.|..+++++|.|+.|++.+-|++
T Consensus 11 ~~p~~~~~~~~~g~tLL~a~~~~gi~ 36 (110)
T TIGR02007 11 LCPEGAVVEAKPGETILDVALDNGIE 36 (110)
T ss_pred cCCCCeEEEECCCChHHHHHHHcCCC
Confidence 68999999999999999999998875
No 94
>smart00257 LysM Lysin motif.
Probab=51.00 E-value=12 Score=25.46 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=31.8
Q ss_pred EEcCCCCCHHHHHHHhCCc-ceEEEECCeecCCCCcCCCCCEEEE
Q 007593 552 MRLRSGSTAADAAMKVGLE-GKLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 552 ~~lp~GaTv~D~a~~lgi~-~~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
+.+.+|.|+..++.++|+. ..++..|+. .....++.|+++.|
T Consensus 2 ~~v~~gdt~~~ia~~~~~~~~~~~~~N~~--~~~~~~~~g~~l~i 44 (44)
T smart00257 2 YTVKKGDTLSSIARRYGISVSDLLELNNI--LDPDNLQVGQKLKI 44 (44)
T ss_pred eEeCCCCCHHHHHHHhCCCHHHHHHHcCC--CCccccCCCCEEeC
Confidence 4578999999999999987 566777872 22356888887753
No 95
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=50.78 E-value=9.7 Score=27.31 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=30.2
Q ss_pred cCCCCCHHHHHHHhCCc-ceEEEECCeecCCCCcCCCCCEEEE
Q 007593 554 LRSGSTAADAAMKVGLE-GKLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 554 lp~GaTv~D~a~~lgi~-~~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
+.+|.|+.++|++.|+. -.++..|+.... ...+..|++|.|
T Consensus 1 v~~gdtl~~IA~~~~~~~~~l~~~N~~~~~-~~~~~~g~~l~i 42 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDFDELIQANPQLSN-PNLIYPGMKIKI 42 (44)
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHhhcCCC-CCCcCCCCEEec
Confidence 35799999999999987 466677864322 345888998765
No 96
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=49.90 E-value=15 Score=36.88 Aligned_cols=26 Identities=46% Similarity=0.728 Sum_probs=23.2
Q ss_pred ceEEEECCeecC-CCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLVL-PNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~~-l~t~L~dGD~V~i~ 596 (597)
-..++|||+.+. +++.|+.||+|+|.
T Consensus 117 ~G~V~VNgk~v~~ps~~v~~GD~I~v~ 143 (203)
T PRK05327 117 HGHILVNGKKVNIPSYRVKPGDVIEVR 143 (203)
T ss_pred CCcEEECCEEECCCCcCCCCCCEEEEC
Confidence 456999999997 99999999999985
No 97
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=48.47 E-value=63 Score=26.54 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=38.2
Q ss_pred EEEEccCCceE--EcCCCCCHHHHHHHh----CC--c---ceEEEECCeecCCC-----CcCCCCCEEEEe
Q 007593 542 VIVCWPNGEIM--RLRSGSTAADAAMKV----GL--E---GKLVLVNGQLVLPN-----TELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~~--~lp~GaTv~D~a~~l----gi--~---~~~~~VNGr~~~l~-----t~L~dGD~V~i~ 596 (597)
++|.+..|..+ ++++..||.++=..+ |+ + .++. .||+...-+ .-+++|++|.+.
T Consensus 3 i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~-~~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 3 ITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI-YSGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE-ECCEEccCCCCHHHcCCCCCCEEEEE
Confidence 35777778764 568889999987776 66 5 2444 588877644 357899988764
No 98
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.59 E-value=19 Score=32.15 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHhCC------------------cceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 555 RSGSTAADAAMKVGL------------------EGKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 555 p~GaTv~D~a~~lgi------------------~~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
-+|+|+++++.++.. +..+|.||++.=. .+++|++||.++++
T Consensus 27 ~e~~~vg~liD~~~~~i~~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ledgDiIvfi 90 (96)
T COG5131 27 VEGSSVGTLIDALRYFIYAPTRDSIFIEHGELRPGIICLINDMDWELLEKERYPLEDGDIIVFI 90 (96)
T ss_pred cCCcchhhHHHHHHHHHhCCccceeeecCCCCcccEEEEEcCccHhhhhcccccCCCCCEEEEE
Confidence 567777777666521 3789999998654 45889999999875
No 99
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=47.06 E-value=19 Score=37.91 Aligned_cols=27 Identities=41% Similarity=0.331 Sum_probs=23.5
Q ss_pred ceEEEECCeec-CCCCcCCCCCEEEEeC
Q 007593 571 GKLVLVNGQLV-LPNTELKDGDIVEVRV 597 (597)
Q Consensus 571 ~~~~~VNGr~~-~l~t~L~dGD~V~i~~ 597 (597)
-..|+|||+.+ .+++.++.||+|+||.
T Consensus 215 ~g~V~vN~~~v~~~s~~v~~gD~isiRG 242 (267)
T PLN00051 215 SGDVRVNWREVTKNGTTLKTGDVVSVSG 242 (267)
T ss_pred cCcEEECCEEcCCCCCCCCCCCEEEEee
Confidence 35579999997 8999999999999983
No 100
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=46.29 E-value=1.2e+02 Score=24.46 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=38.2
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCC-----CCcCCCCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLP-----NTELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l-----~t~L~dGD~V~i~ 596 (597)
+|=+.+|+. +++++..|+.++-.++ |++ -++. .||+...- +.-+++|++|.+.
T Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~~~i~~g~~i~l~ 70 (76)
T cd01806 4 KVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAADYKLEGGSVLHLV 70 (76)
T ss_pred EEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHHcCCCCCCEEEEE
Confidence 355566666 5579999999998887 776 3555 68887554 3457899999875
No 101
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=42.83 E-value=24 Score=36.83 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.4
Q ss_pred ceEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
-.-|+|||+.+ .+++.++.||+|.|+
T Consensus 207 ~G~V~VNg~~v~~~s~~v~~gD~Isvr 233 (257)
T TIGR03069 207 AGRLRLNWKTVTQPSRELKVGDRLQLR 233 (257)
T ss_pred CCeEEECCEEcCCCCCcCCCCCEEEEc
Confidence 46689999998 899999999999987
No 102
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=42.62 E-value=1e+02 Score=24.67 Aligned_cols=51 Identities=29% Similarity=0.315 Sum_probs=35.7
Q ss_pred EEccCCceE--EcCCCCCHHHHHHHh----CCcc---eEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 544 VCWPNGEIM--RLRSGSTAADAAMKV----GLEG---KLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~~--~lp~GaTv~D~a~~l----gi~~---~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
|-|. |+.+ +++..+|+.++-.++ |+++ ++ +.+|+...-+.. +++|++|.+.
T Consensus 5 vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L-~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 5 VKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKL-IFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred EEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEE-eeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 4454 5654 478999999998887 7763 44 467876654443 5899999875
No 103
>CHL00134 petF ferredoxin; Validated
Probab=42.21 E-value=67 Score=28.47 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=29.5
Q ss_pred eEEEE--ccCCceEEcCCCCCHHHHHHHhCCc------------ceEEEECCee
Q 007593 541 VVIVC--WPNGEIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQL 580 (597)
Q Consensus 541 v~~vf--~p~g~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~ 580 (597)
|.+.+ .+.+..+.+|+|.|+.|+|.+-|++ |++-.+.|..
T Consensus 6 v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v 59 (99)
T CHL00134 6 VTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTV 59 (99)
T ss_pred EEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCcc
Confidence 44444 4455579999999999999999874 5666667754
No 104
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=42.17 E-value=26 Score=28.88 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCeEEeeeccccccCCceEEEeCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
||+ .++.++.|+.||+|+++.|-
T Consensus 55 Ng~--~v~~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 55 NGE--YVRLDTPLKDGDEVAIIPPV 77 (80)
T ss_pred CCe--EcCCCcccCCCCEEEEeCCC
Confidence 788 78899999999999999874
No 105
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=42.03 E-value=26 Score=35.22 Aligned_cols=26 Identities=35% Similarity=0.751 Sum_probs=23.0
Q ss_pred ceEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
-.-++|||+.+ .+++.++.||+|+|.
T Consensus 114 ~G~V~VNgk~v~~ps~~V~~GD~I~V~ 140 (200)
T TIGR01017 114 HGHILVNGKKVDIPSYQVRPGDIISIK 140 (200)
T ss_pred CCCEEECCEEeCCCCCCCCCCCEEEEe
Confidence 46699999998 689999999999985
No 106
>PF06805 Lambda_tail_I: Bacteriophage lambda tail assembly protein I; InterPro: IPR010654 This family consists of several Bacteriophage lambda tail assembly protein I and related phage and bacterial sequences. Members of this family are typically around 200 residues in length. The function of this family is unknown.
Probab=41.65 E-value=43 Score=29.06 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=34.9
Q ss_pred CceEEcCCCCCHHHHHHHhCCc---------ceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 549 GEIMRLRSGSTAADAAMKVGLE---------GKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 549 g~~~~lp~GaTv~D~a~~lgi~---------~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
|....++ +.|+.+++++|... +-++..||...+. +..+++|++|.|+
T Consensus 17 Gr~~~l~-v~t~~Eai~AL~~~~pGf~~~~~v~~~~~ng~~~l~~~~~~~~~~~g~~I~Iv 76 (82)
T PF06805_consen 17 GRRHRLA-VDTPAEAIRALCVQLPGFEQFFAVFIGKRNGEDELEARWHDERPKGGSVIRIV 76 (82)
T ss_pred eEEEEec-cCCHHHHHHHHHhcChhhhhhcceEEeeeCChhhhhhhhhcccCCCCCEEEEE
Confidence 4555444 88999999998542 5678888777762 2579999999885
No 107
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=40.50 E-value=32 Score=34.69 Aligned_cols=41 Identities=27% Similarity=0.234 Sum_probs=31.8
Q ss_pred eEEcCCCCCHHHHHHHhC---Cc------------ce--EEEECCeec-CCCCcCCC-CC
Q 007593 551 IMRLRSGSTAADAAMKVG---LE------------GK--LVLVNGQLV-LPNTELKD-GD 591 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~lg---i~------------~~--~~~VNGr~~-~l~t~L~d-GD 591 (597)
.+++++|.|+.|++.+++ ++ |. .+.|||+.+ .-.|++++ |.
T Consensus 18 ~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~ 77 (220)
T TIGR00384 18 EVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQ 77 (220)
T ss_pred EEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCC
Confidence 355679999999999976 11 22 589999987 57888888 87
No 108
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=39.61 E-value=29 Score=40.21 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=26.4
Q ss_pred CCcceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 568 GLEGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 568 gi~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+-++.+|+|||++++|+++|.+|+.|+++
T Consensus 32 ~~~~v~a~vng~l~dL~~~l~~d~~Vefi 60 (638)
T PRK00413 32 AKAAVAGKVNGELVDLSTPIEEDASLEII 60 (638)
T ss_pred hhheEEEEECCEEeeCCccccCCCceeee
Confidence 44689999999999999999999999986
No 109
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=38.22 E-value=19 Score=31.51 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=18.4
Q ss_pred CCeEEeeec----cccccCCceEEEeCCCC
Q 007593 368 GGRELLVAV----SFGLAASEVVADRRPSF 393 (597)
Q Consensus 368 ng~~~lv~l----~~~L~~gD~Vei~T~k~ 393 (597)
||. ++|= ++.|+.||.|||++.-+
T Consensus 55 Ng~--iVpr~~w~~t~L~egD~IEIv~~Vg 82 (84)
T PRK06083 55 NNQ--VVPRSEWQSTVLSSGDAISLFQAIA 82 (84)
T ss_pred CCE--EeCHHHcCcccCCCCCEEEEEEEec
Confidence 778 5663 56799999999998643
No 110
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=38.15 E-value=35 Score=32.44 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.1
Q ss_pred ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
-.-|.|||+.+.+...++.||.|.|.
T Consensus 33 ~G~V~vnG~~~Kps~~V~~gd~l~v~ 58 (133)
T PRK10348 33 GGKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_pred CCCEEECCEECCCCCccCCCCEEEEE
Confidence 35688999999999999999999874
No 111
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=37.90 E-value=30 Score=30.03 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=31.2
Q ss_pred cccCCCCeeee---cC--CeeeeeEEEEEccCCeEEeeeccccccCCceEEEeC
Q 007593 342 SLKMGHPVIRV---EG--SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 342 ~Lp~Gat~Ldf---iG--~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
.++.++|+=|. .| +.=++... | ||+ -+++++.++.||.|.|+-
T Consensus 28 ~~~~~~tvkd~IEsLGVP~tEV~~i~--v--NG~--~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 28 PFDGGATVKDVIESLGVPHTEVGLIL--V--NGR--PVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred ecCCCCcHHHHHHHcCCChHHeEEEE--E--CCE--ECCCcccCCCCCEEEEEe
Confidence 56677777665 23 34445554 3 789 799999999999999974
No 112
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=37.03 E-value=32 Score=34.81 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=23.0
Q ss_pred ceEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
-.-+.|||+.+ .+++.++.||+|+|.
T Consensus 113 ~G~V~VNGk~v~~ps~~Vk~GD~I~V~ 139 (201)
T CHL00113 113 HGHILVNGRIVDIPSYRCKPKDIITVK 139 (201)
T ss_pred CCcEEECCEEecCccccCCCCCEEEEc
Confidence 46789999999 689999999999984
No 113
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=35.95 E-value=1.4e+02 Score=24.35 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=36.4
Q ss_pred EEccCCce-EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCC-----CCcCCCCCEEEEe
Q 007593 544 VCWPNGEI-MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLP-----NTELKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~-~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l-----~t~L~dGD~V~i~ 596 (597)
|-+++|.. +++++.+|+.++=..+ |++ .++++ +|+...= +.-+++|++|.+.
T Consensus 5 vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~-~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 5 VKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF-AGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE-CCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 45566655 7889999999987766 665 46655 7776542 3457888888764
No 114
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=34.89 E-value=40 Score=27.52 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.9
Q ss_pred CCeEEeeec---cccccCCceEEEeCCCC
Q 007593 368 GGRELLVAV---SFGLAASEVVADRRPSF 393 (597)
Q Consensus 368 ng~~~lv~l---~~~L~~gD~Vei~T~k~ 393 (597)
||+ .++- ++.|+.||+|+++.|-.
T Consensus 49 N~~--~v~~~~~~~~l~~gD~V~i~ppvs 75 (77)
T PF02597_consen 49 NGE--IVPDDGLDTPLKDGDEVAILPPVS 75 (77)
T ss_dssp TTE--EEGGGTTTSBEETTEEEEEEESTS
T ss_pred CCE--EcCCccCCcCcCCCCEEEEECCCC
Confidence 788 7888 99999999999998743
No 115
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=34.77 E-value=45 Score=28.80 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=18.6
Q ss_pred eeeccccccCCceEEEeCCC
Q 007593 373 LVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 373 lv~l~~~L~~gD~Vei~T~k 392 (597)
++++++.|+.||+|.+|-|-
T Consensus 62 ~~~~~t~L~dGDeVa~~PPV 81 (84)
T COG1977 62 LVGLDTPLKDGDEVAFFPPV 81 (84)
T ss_pred eccccccCCCCCEEEEeCCC
Confidence 99999999999999999764
No 116
>PRK11507 ribosome-associated protein; Provisional
Probab=34.24 E-value=44 Score=28.54 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=26.8
Q ss_pred CHHHHHHHhCCc-----------ceEEEECCeecCCC-CcCCCCCEEEE
Q 007593 559 TAADAAMKVGLE-----------GKLVLVNGQLVLPN-TELKDGDIVEV 595 (597)
Q Consensus 559 Tv~D~a~~lgi~-----------~~~~~VNGr~~~l~-t~L~dGD~V~i 595 (597)
+...|....|+- -..++|||....-+ .+|++||+|++
T Consensus 13 ~L~QlLK~~~~v~SGG~AK~~I~eg~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 13 ELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred EHHHHHhhhCcccChHHHHHHHHcCceEECCEEecccCCCCCCCCEEEE
Confidence 445566655542 35699999987654 57999999987
No 117
>PTZ00038 ferredoxin; Provisional
Probab=33.83 E-value=1e+02 Score=31.03 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.8
Q ss_pred ccCC-ceEEcCCCCCHHHHHHHhCCc
Q 007593 546 WPNG-EIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 546 ~p~g-~~~~lp~GaTv~D~a~~lgi~ 570 (597)
.|.| ..+++++|.|+.|+|.+-|++
T Consensus 102 ~~~g~~~~~v~~geTILdAae~aGI~ 127 (191)
T PTZ00038 102 TPDGEKVIECDEDEYILDAAERQGVE 127 (191)
T ss_pred eCCCcEEEEeCCCCcHHHHHHHcCCC
Confidence 4655 799999999999999999874
No 118
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=33.60 E-value=18 Score=32.61 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=9.8
Q ss_pred HHHHhhhhhccC
Q 007593 39 AELEDLCFAVLQ 50 (597)
Q Consensus 39 ~ELEDL~F~~L~ 50 (597)
+||||+||+|-+
T Consensus 20 t~LED~CfkfNY 31 (109)
T PF04753_consen 20 TELEDFCFKFNY 31 (109)
T ss_pred chHHHHHHHhcc
Confidence 689999999544
No 119
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=33.45 E-value=1.4e+02 Score=27.97 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=39.0
Q ss_pred CCceEEEEccCCceEEcCCCCCHHHHHHHh-CCcc-----eEEEECCeecCCCCcCCCCCE
Q 007593 538 PGEVVIVCWPNGEIMRLRSGSTAADAAMKV-GLEG-----KLVLVNGQLVLPNTELKDGDI 592 (597)
Q Consensus 538 ~~ev~~vf~p~g~~~~lp~GaTv~D~a~~l-gi~~-----~~~~VNGr~~~l~t~L~dGD~ 592 (597)
....+-|..++|.+.++....||.++.... |.-+ .-..-.-..++++.+|+.|-.
T Consensus 14 ~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~~~~~~~~~~l~~d~~L~~G~~ 74 (181)
T PF14009_consen 14 SAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDSFRFGRRIKPLPPDEELQPGQI 74 (181)
T ss_pred CCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEeccccccCCCcccCCCccCeecCCCE
Confidence 345666778999999999999999999986 3311 112223346678888888854
No 120
>PLN03136 Ferredoxin; Provisional
Probab=32.73 E-value=1.2e+02 Score=29.25 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=31.2
Q ss_pred EEE-ccCC-ceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeecC
Q 007593 543 IVC-WPNG-EIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLVL 582 (597)
Q Consensus 543 ~vf-~p~g-~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~~ 582 (597)
|.| .|+| ..+++|+|.|+.|++.+-|++ |++-.+.|....
T Consensus 57 V~l~~~~~~~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~ 110 (148)
T PLN03136 57 VKFITPEGEQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQ 110 (148)
T ss_pred EEEecCCCcEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCcc
Confidence 345 6777 689999999999999999874 566667776543
No 121
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=32.65 E-value=64 Score=34.76 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=29.9
Q ss_pred ceEEcCCCCCHHHHHHHhCCc----------c-------eEEEECCeecCC-CCcCCC
Q 007593 550 EIMRLRSGSTAADAAMKVGLE----------G-------KLVLVNGQLVLP-NTELKD 589 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~----------~-------~~~~VNGr~~~l-~t~L~d 589 (597)
-.+++++|.|+.|++..+++. | =.+.|||+.+.. .|.+++
T Consensus 21 ~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~ 78 (329)
T PRK12577 21 YTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGS 78 (329)
T ss_pred EEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhh
Confidence 345778999999999999753 1 248899997664 666665
No 122
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=32.52 E-value=11 Score=27.71 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=28.2
Q ss_pred EEcCCCCCHHHHHHHhCCc-ceEEEECCeecCCCCcCCCCCEEEE
Q 007593 552 MRLRSGSTAADAAMKVGLE-GKLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 552 ~~lp~GaTv~D~a~~lgi~-~~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
+.+-+|.|+..+|.+.|+. -.+...|-..-..+ |..|+++-|
T Consensus 1 y~V~~gDtl~~IA~~~~~~~~~l~~~N~~~~~~~--l~~G~~l~i 43 (44)
T PF01476_consen 1 YTVQPGDTLWSIAKRYGISVDELMELNPNIDSDN--LQPGQKLCI 43 (44)
T ss_dssp EEE-TT--HHHHHHHTTS-HHHHHHHCCTTHGGC--GGTTEEEEE
T ss_pred CEECcCCcHHHHHhhhhhhHhHHHHhcCCCCccc--CCCCCEEEe
Confidence 3567899999999999998 47777883333333 999988765
No 123
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=31.05 E-value=2.5e+02 Score=23.58 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=35.5
Q ss_pred EEEccCCceE--EcCCCCCHHHHHHHh----CCc---ceEEEECCeecCC-----CCcCCCCCEEEE
Q 007593 543 IVCWPNGEIM--RLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLP-----NTELKDGDIVEV 595 (597)
Q Consensus 543 ~vf~p~g~~~--~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l-----~t~L~dGD~V~i 595 (597)
.|-+..|+.+ ++++.+||.|+=..+ |++ -++++- |+...= ++-+++|.+|.+
T Consensus 5 ~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-Gk~L~D~~tL~~ygi~~~stv~l 70 (73)
T cd01791 5 VCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW-YTIFKDHISLGDYEIHDGMNLEL 70 (73)
T ss_pred EEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC-CcCCCCCCCHHHcCCCCCCEEEE
Confidence 3555556655 679999999987776 776 477754 654442 234889998876
No 124
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=29.82 E-value=3e+02 Score=22.16 Aligned_cols=54 Identities=13% Similarity=0.321 Sum_probs=38.1
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
++|-+++|+. +++++..|+.++=.++ |++ -++. .+|+...-+. -+++|++|.+.
T Consensus 3 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (76)
T cd01803 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLV 70 (76)
T ss_pred EEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 3466666655 5778999999997776 676 3444 6888766444 56778888875
No 125
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=29.53 E-value=1.9e+02 Score=23.41 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=36.7
Q ss_pred EEEccCCceEEc--CCCCCHHHHHHHh----CCcc---eEEEECCeecCCC-----CcCCCCCEEEEeC
Q 007593 543 IVCWPNGEIMRL--RSGSTAADAAMKV----GLEG---KLVLVNGQLVLPN-----TELKDGDIVEVRV 597 (597)
Q Consensus 543 ~vf~p~g~~~~l--p~GaTv~D~a~~l----gi~~---~~~~VNGr~~~l~-----t~L~dGD~V~i~~ 597 (597)
.|-+++|+.+.+ ....|+..+..++ |++. .-.+-||....++ .-|.|||+|++++
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 4 KVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred EEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 355666765544 8899999988775 7764 3455567666554 4588999999864
No 126
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=29.00 E-value=1.5e+02 Score=23.00 Aligned_cols=44 Identities=18% Similarity=0.466 Sum_probs=31.5
Q ss_pred EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 552 MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 552 ~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
+.++..+|+.++-.++ |++ .++ ..||+...-+. -+++|+.|.+.
T Consensus 12 ~~~~~~~ti~~lK~~i~~~~~~~~~~~~l-~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 12 LEVSPDDTVAELKAKIAAKEGVPPEQQRL-IYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEE-EECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 5678899999987765 666 344 56888776555 44788888764
No 127
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=29.00 E-value=48 Score=27.80 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.1
Q ss_pred eEEEECCeecC--CCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVL--PNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~--l~t~L~dGD~V~i 595 (597)
.+++|||+.+. -..+|.+||++.|
T Consensus 66 ~g~~vn~~~~~~~~~~~l~~gd~i~i 91 (102)
T cd00060 66 NGTFVNGQRVSPGEPVRLRDGDVIRL 91 (102)
T ss_pred CCeEECCEECCCCCcEECCCCCEEEE
Confidence 36899999999 6889999999987
No 128
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=28.92 E-value=46 Score=35.26 Aligned_cols=24 Identities=46% Similarity=0.670 Sum_probs=22.3
Q ss_pred EEEECCeecCCCCcCCCCCEEEEe
Q 007593 573 LVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 573 ~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
-++|||+.+..+..|+.||+|.+-
T Consensus 38 ~v~vNg~~v~~~~~l~~gd~i~~~ 61 (289)
T COG0564 38 RVRVNGKKVKPSYKLKPGDVVRIP 61 (289)
T ss_pred CEEECCEEccCCeeeCCCCEEEEe
Confidence 689999999999999999999874
No 129
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=28.76 E-value=72 Score=26.27 Aligned_cols=24 Identities=29% Similarity=0.453 Sum_probs=21.5
Q ss_pred cCCceEEcCCCCCHHHHHHHhCCc
Q 007593 547 PNGEIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 547 p~g~~~~lp~GaTv~D~a~~lgi~ 570 (597)
.+|..+.+++|.|+.+++.+.|++
T Consensus 7 ~~~~~~~~~~g~~ll~al~~~g~~ 30 (84)
T cd00207 7 GSGVEVEVPEGETLLDAAREAGID 30 (84)
T ss_pred CCCEEEEECCCCcHHHHHHHcCCC
Confidence 378999999999999999998874
No 130
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=28.39 E-value=56 Score=27.54 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=20.7
Q ss_pred CCeEEeeeccccccCCceEEEeCCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
||+ .++.++.|+.||+|+++.|-.
T Consensus 57 N~~--~v~~~~~l~dgDeVai~Ppvs 80 (82)
T PLN02799 57 NEE--YTTESAALKDGDELAIIPPIS 80 (82)
T ss_pred CCE--EcCCCcCcCCCCEEEEeCCCC
Confidence 678 689999999999999998743
No 131
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=28.21 E-value=15 Score=32.01 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=25.6
Q ss_pred eEEcCCCCCHHHHHHHhCCc----ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 551 IMRLRSGSTAADAAMKVGLE----GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~lgi~----~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
.+.++.|-|...+-.++|++ -.++..+|..-+| +.|+.||.|.+.
T Consensus 4 ~~~V~~GDtLs~iF~~~gls~~dl~~v~~~~~~~k~L-~~L~pGq~l~f~ 52 (85)
T PF04225_consen 4 EYTVKSGDTLSTIFRRAGLSASDLYAVLEADGEAKPL-TRLKPGQTLEFQ 52 (85)
T ss_dssp EEE--TT--HHHHHHHTT--HHHHHHHHHHGGGT--G-GG--TT-EEEEE
T ss_pred EEEECCCCcHHHHHHHcCCCHHHHHHHHhccCccchH-hhCCCCCEEEEE
Confidence 46789999999999999997 3555566544444 459999999875
No 132
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional
Probab=27.79 E-value=54 Score=34.91 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.1
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
..+.|||+.+.+++.|+.||+|.|
T Consensus 45 G~V~VNg~~v~~~~~v~~GD~I~i 68 (317)
T PRK11025 45 GEVRVNKKRIKPEYKLEAGDEVRI 68 (317)
T ss_pred CCEEECCEEcCcccccCCCCEEEe
Confidence 357899999999999999999886
No 133
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=27.70 E-value=67 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.5
Q ss_pred CeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCC
Q 007593 355 SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 355 ~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
+..+...++-||++.-+++..+++.|+.||.|.++-|-
T Consensus 54 g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v 91 (94)
T cd01764 54 GSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTL 91 (94)
T ss_pred CcccCCEEEEECCccccccCCcccCCCCcCEEEEECCC
Confidence 34445566667765545566899999999999998653
No 134
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=26.31 E-value=54 Score=35.61 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=31.4
Q ss_pred ccccCCCCeeee---cCCeeeeeEEEEEccCCeEEeee----ccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGSNLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~~~~~AkV~~v~~ng~~~lv~----l~~~L~~gD~Vei~T~k~ 393 (597)
.+++.|.|+.|+ .|..-. ..+ |.-||+ ++| -++.|+.||+|||++.-+
T Consensus 10 ~el~e~~TL~dLL~~L~i~~~-~VA--VeVNge--IVpr~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 10 RQVPAGLTIAALLAELGLAPK-KVA--VERNLE--IVPRSEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred EecCCCCcHHHHHHHcCCCCC-eEE--EEECCE--ECCHHHcCccccCCCCEEEEEEEec
Confidence 356777776544 332211 122 222788 788 777999999999998765
No 135
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.27 E-value=49 Score=26.63 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.7
Q ss_pred ceEEcCCCCCHHHHHHHhCCc
Q 007593 550 EIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~ 570 (597)
+-|+.|++.|..|+|..|||.
T Consensus 16 GYfd~PR~~tl~elA~~lgis 36 (53)
T PF04967_consen 16 GYFDVPRRITLEELAEELGIS 36 (53)
T ss_pred CCCCCCCcCCHHHHHHHhCCC
Confidence 457899999999999999984
No 136
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=25.27 E-value=1.1e+02 Score=26.47 Aligned_cols=38 Identities=34% Similarity=0.443 Sum_probs=29.2
Q ss_pred CCHHHHHHHhCCc-----------ceEEEECCeecCC-CCcCCCCCEEEE
Q 007593 558 STAADAAMKVGLE-----------GKLVLVNGQLVLP-NTELKDGDIVEV 595 (597)
Q Consensus 558 aTv~D~a~~lgi~-----------~~~~~VNGr~~~l-~t~L~dGD~V~i 595 (597)
-|..+|..-+|+- -.-|+|||..-.= ..+|++||+|+|
T Consensus 12 I~L~qlLK~~g~i~sGG~AK~~i~eg~V~vNGe~EtRRgkKlr~gd~V~i 61 (73)
T COG2501 12 ITLGQLLKLAGLIESGGQAKAFIAEGEVKVNGEVETRRGKKLRDGDVVEI 61 (73)
T ss_pred EEHHHHHHHhCcccCcHHHHHHHHCCeEEECCeeeeccCCEeecCCEEEE
Confidence 4677888888763 3469999987654 457999999987
No 137
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=25.18 E-value=2.1e+02 Score=22.81 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=32.5
Q ss_pred eEEcCCCCCHHHHHHHh----CCcc--eEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 551 IMRLRSGSTAADAAMKV----GLEG--KLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~l----gi~~--~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
.++++...|+.|+=.++ |+++ --.+.||+...-+. -+++|++|.+.
T Consensus 9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 9 TLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEE
T ss_pred EEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEE
Confidence 35668999999987776 6762 33445888775544 45889988765
No 138
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=24.36 E-value=3.1e+02 Score=29.06 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=36.0
Q ss_pred ceEEEEccCCceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeecCC
Q 007593 540 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLVLP 583 (597)
Q Consensus 540 ev~~vf~p~g~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~~l 583 (597)
.+.+++...|..+.+|+|.|+.|++.+.|++ |++-.+.|..-..
T Consensus 248 ~~~v~~~~~~~~~~~~~~~~lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~ 303 (332)
T PRK10684 248 GLTFTKLQPAREFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVS 303 (332)
T ss_pred ceEEEEecCCEEEEeCCCChHHHHHHHcCCCccCCCCCcCCCCCEEEEecCccccc
Confidence 4556788899999999999999999999984 6666778876643
No 139
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.34 E-value=53 Score=40.56 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.8
Q ss_pred EEECCeecCCCCcCCCCCEEEE
Q 007593 574 VLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 574 ~~VNGr~~~l~t~L~dGD~V~i 595 (597)
++|||.+|.-.+.|+.||||-+
T Consensus 525 tyVNGk~v~ep~qL~~GdRiil 546 (1221)
T KOG0245|consen 525 TYVNGKLVTEPTQLRSGDRIIL 546 (1221)
T ss_pred eeEccEEcCCcceeccCCEEEE
Confidence 8999999999999999999965
No 140
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=24.01 E-value=42 Score=28.17 Aligned_cols=37 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred CHHHHHHHhCCc-----------ceEEEECCeecCC-CCcCCCCCEEEE
Q 007593 559 TAADAAMKVGLE-----------GKLVLVNGQLVLP-NTELKDGDIVEV 595 (597)
Q Consensus 559 Tv~D~a~~lgi~-----------~~~~~VNGr~~~l-~t~L~dGD~V~i 595 (597)
|+..|....|+- -..++|||....- ..+|++||+|++
T Consensus 9 ~L~qlLK~~glv~sGGeAK~~I~~g~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 9 TLGQLLKLAGLVSSGGEAKALIQEGEVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp -HHHHHHHHTS-SSSSTTSHHHHHHHHEETTB----SS----SSEEEEE
T ss_pred EHHHHHhHcCCcccHHHHHHHHHcCceEECCEEccccCCcCCCCCEEEE
Confidence 455666666652 3458999998765 468999999987
No 141
>PTZ00044 ubiquitin; Provisional
Probab=23.00 E-value=2.9e+02 Score=22.53 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=37.8
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCC-----CcCCCCCEEEEe
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPN-----TELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~-----t~L~dGD~V~i~ 596 (597)
++|=+.+|.. +++.+..|+.++-.++ |++ .++. -+|+...-+ .-+++|++|.+.
T Consensus 3 i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 3 ILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSGKQMSDDLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCEEccCCCcHHHcCCCCCCEEEEE
Confidence 3466777665 5678999999977765 887 3555 577776533 456778888875
No 142
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=22.77 E-value=3e+02 Score=23.08 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=35.6
Q ss_pred EEEccCCceEE--cCCCCCHHHHHHHh----CCc---ceEEEE-CCeecCCC-----CcCCCCCEEEEe
Q 007593 543 IVCWPNGEIMR--LRSGSTAADAAMKV----GLE---GKLVLV-NGQLVLPN-----TELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~~~--lp~GaTv~D~a~~l----gi~---~~~~~V-NGr~~~l~-----t~L~dGD~V~i~ 596 (597)
+|-+.+|+.+. +++.+||.|+=..+ |++ -++..+ +|+...-+ +-+++|++|.+.
T Consensus 6 ~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~ 74 (80)
T cd01792 6 KVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLV 74 (80)
T ss_pred EEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEE
Confidence 36666777664 58999999987776 665 355333 66654433 347888888764
No 143
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional
Probab=22.69 E-value=79 Score=33.73 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=21.8
Q ss_pred ceEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 571 GKLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 571 ~~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
-..++|||+.+ .+.+.|+.||+|.+.
T Consensus 42 ~G~V~VNg~~v~~~~~~v~~gD~I~v~ 68 (325)
T PRK11180 42 DQRVLVNGKVINKPKEKVLGGEQVAID 68 (325)
T ss_pred CCCEEECCEEccCCCcCcCCCCEEEEe
Confidence 34688999987 589999999999875
No 144
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.63 E-value=1.8e+02 Score=25.13 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcccCcCCcccccccCCCCCCcceeEEEEEcCCCceEEEE
Q 007593 228 QCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQ 278 (597)
Q Consensus 228 ~dCY~vlgiIh~~~~pip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQ 278 (597)
+|+..++..+.+.-- ..++..|...+|....+.+.+|+|..+||.
T Consensus 73 ~dvd~~~~~l~~~g~------~~~~~~~~~~~~g~r~~~~~DPdGn~iei~ 117 (120)
T cd09011 73 EDFDAFLDKLKRYDN------IEYVHPIKEHPWGQRVVRFYDPDKHIIEVG 117 (120)
T ss_pred hhhHHHHHHHHhcCC------cEEecCcccCCCccEEEEEECCCCCEEEEe
Confidence 466666666666421 123344554445445667789999999985
No 145
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=22.62 E-value=72 Score=26.22 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=14.1
Q ss_pred EEECCeecCC---CCcCCCCCEEEE
Q 007593 574 VLVNGQLVLP---NTELKDGDIVEV 595 (597)
Q Consensus 574 ~~VNGr~~~l---~t~L~dGD~V~i 595 (597)
-+|||..++. ..+|++||+|..
T Consensus 43 ~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 43 YYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEETTEE-SS-CCC-B--TTEEEEE
T ss_pred EEECCEEhhcCcceeEeCCCCEEEe
Confidence 5678888775 578999999875
No 146
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=22.61 E-value=57 Score=26.10 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCCCHHH--HHHHhCCcceEEEECCe--ecCCCCcCCCCCEEEEe
Q 007593 556 SGSTAAD--AAMKVGLEGKLVLVNGQ--LVLPNTELKDGDIVEVR 596 (597)
Q Consensus 556 ~GaTv~D--~a~~lgi~~~~~~VNGr--~~~l~t~L~dGD~V~i~ 596 (597)
.|.|+.| +-.+.|+.+..+.=||+ ....+++|+.||+|-+.
T Consensus 13 ~gk~l~el~l~~~~~~~i~~i~R~~~~~~p~~~~~l~~gD~l~v~ 57 (71)
T PF02080_consen 13 VGKTLKELDLPERYGVRIVAIKRGGEIIIPDGDTVLQAGDILIVV 57 (71)
T ss_dssp TTEBHHHCTHHCHHTEEEEEEEETEEEES--TT-BE-TTEEEEEE
T ss_pred CCCCHHHCCCCccCCEEEEEEEECCEEECCCCCCEECCCCEEEEE
Confidence 4667888 44445777766666654 45568999999999875
No 147
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=22.11 E-value=1.8e+02 Score=24.99 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=39.1
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCC-----CCcCCCCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLP-----NTELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l-----~t~L~dGD~V~i~ 596 (597)
.|-+++|.. +.+...+|+..+..++ |++ +++.| ||+.... +.-++|||++.+.
T Consensus 15 ~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 15 KVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-DGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred EEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-CCeECCCCCCHHHcCCCCCCEEEEE
Confidence 466777776 6678999999998886 776 56655 6666654 4568999999875
No 148
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=21.84 E-value=97 Score=32.68 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=28.5
Q ss_pred ceEEcCCCCCHHHHHHHhCCc---------------c--eEEEECCeecCC-CCcCCC
Q 007593 550 EIMRLRSGSTAADAAMKVGLE---------------G--KLVLVNGQLVLP-NTELKD 589 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~---------------~--~~~~VNGr~~~l-~t~L~d 589 (597)
-.+++++|.|+.|++.+++.. | =.+.|||+.+.. .|.+++
T Consensus 27 ~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~t~v~~ 84 (279)
T PRK12576 27 YKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKTLVLD 84 (279)
T ss_pred EEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEeccccCcHHH
Confidence 346789999999999998632 1 248899997663 455543
No 149
>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown]
Probab=21.52 E-value=65 Score=33.87 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=36.1
Q ss_pred ccCCceEEcCCCCCHHHHHHHh-----------CCcceEEEECCeecC-CCCcCCCCCEEEEeC
Q 007593 546 WPNGEIMRLRSGSTAADAAMKV-----------GLEGKLVLVNGQLVL-PNTELKDGDIVEVRV 597 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~l-----------gi~~~~~~VNGr~~~-l~t~L~dGD~V~i~~ 597 (597)
+|+-+.+.+---+==.|++-+- .|+-+.|.||++.|. .+..++.||.++|+.
T Consensus 168 ~~~~~e~~~~vsSlRLD~vis~~~~~SR~~a~~lIe~g~VkVN~k~v~~~s~~v~~GDliSirG 231 (257)
T COG2302 168 TEKWKELDVTVSSLRLDVVISEGFGLSRAKAQQLIEKGKVKVNWKVVDKASYEVQEGDLISIRG 231 (257)
T ss_pred ccceeEEeeeeehhhHHHHHHHHHhhhHHHHHHHHHcCceEEeeEEeccccceeccCCEEEEec
Confidence 3344444444444445554443 245688999999999 999999999999973
No 150
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=21.33 E-value=1.3e+02 Score=25.50 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.8
Q ss_pred CCeEEeeeccccccCCceEEEeCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
|++ ++..++.|+.||+|.++=|-
T Consensus 56 N~~--~~~~~~~l~dgDeVai~PPV 78 (81)
T PRK11130 56 NQT--LVSFDHPLTDGDEVAFFPPV 78 (81)
T ss_pred CCE--EcCCCCCCCCCCEEEEeCCC
Confidence 667 78899999999999998663
No 151
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=21.28 E-value=98 Score=31.50 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=21.4
Q ss_pred eEEEECCeecC-CCCcCCCCCEEEEe
Q 007593 572 KLVLVNGQLVL-PNTELKDGDIVEVR 596 (597)
Q Consensus 572 ~~~~VNGr~~~-l~t~L~dGD~V~i~ 596 (597)
.=+.|||+.|. |++.++.||.++|.
T Consensus 119 GHI~VnGk~V~iPSy~V~~gdei~V~ 144 (205)
T COG0522 119 GHILVNGKRVNIPSYLVSPGDEISVR 144 (205)
T ss_pred ceEEECCEEeccCcEEecCCCEEEee
Confidence 55899999996 68899999999885
No 152
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=21.27 E-value=1e+02 Score=26.05 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=30.5
Q ss_pred EEccCCceE--EcCCCCCHHHHHHHh----CCc---------ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 544 VCWPNGEIM--RLRSGSTAADAAMKV----GLE---------GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~~--~lp~GaTv~D~a~~l----gi~---------~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
|.+++|..+ .||...|+.+++-.+ +++ -+++..+|+....+.. +.|||++.|+
T Consensus 7 v~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 7 VDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 556555554 569999999888775 431 3555677777666655 4689999875
No 153
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.83 E-value=1.4e+02 Score=33.21 Aligned_cols=48 Identities=31% Similarity=0.331 Sum_probs=0.0
Q ss_pred cCCceEEc--CCCCCHHHHHHH-hCC------cceEEEECCee--cCCCCcCCCCCEEEEeC
Q 007593 547 PNGEIMRL--RSGSTAADAAMK-VGL------EGKLVLVNGQL--VLPNTELKDGDIVEVRV 597 (597)
Q Consensus 547 p~g~~~~l--p~GaTv~D~a~~-lgi------~~~~~~VNGr~--~~l~t~L~dGD~V~i~~ 597 (597)
.+|+||++ |.|+- +||+ +|- ++.++.-||.+ +..+-+|++||++-|.+
T Consensus 149 gkGEImEI~vp~gSi---faYrhi~sI~qk~~RIvl~YRN~klll~~~slvlqp~D~lLVvG 207 (471)
T COG3400 149 GKGEIMEIDVPFGSI---FAYRHIGSIRQKEYRIVLLYRNDKLLLSTKSLVLQPRDILLVVG 207 (471)
T ss_pred ccceEEEEecCCCch---hhhhhhhhhhhheeEEEEEEECCEEEEeccceEecCCCEEEEeC
No 154
>TIGR02907 spore_VI_D stage VI sporulation protein D. SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.
Probab=20.55 E-value=57 Score=35.59 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=36.4
Q ss_pred ceEEcCCCCCHHHHHHHhCCcc-eEEEECCeecCCCCcCCCCCEEEE
Q 007593 550 EIMRLRSGSTAADAAMKVGLEG-KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~~-~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
..+.+.+|-|+..+|++.|+.+ .|+.+|+.. ...|+.|+++-|
T Consensus 294 ~~YiVq~GDTL~sIAkRYGVSV~~L~r~N~L~---~~~L~~GQ~L~I 337 (338)
T TIGR02907 294 RMCIVQEGDTIETIAERYEISVSQLIRHNQLE---DFEVNEGQILYI 337 (338)
T ss_pred EEEEECCCCCHHHHHHHHCcCHHHHHHHhCCC---ccccCCCCEEEe
Confidence 4677899999999999999985 778999753 578999999865
No 155
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=20.21 E-value=1.3e+02 Score=25.15 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=19.9
Q ss_pred CCeEEeeeccccccCCceEEEeCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
||+ .++.+..|+.||+|.++-|-
T Consensus 55 n~~--~v~~~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 55 NEE--YVTDDALLNEGDEVAFIPPV 77 (80)
T ss_pred CCE--EcCCCcCcCCCCEEEEeCCC
Confidence 678 68889999999999999764
Done!