Query 007593
Match_columns 597
No_of_seqs 414 out of 2349
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 3.3E-63 1.1E-67 528.2 19.8 200 4-302 150-349 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 1.2E-43 4.1E-48 358.5 11.7 138 171-324 66-214 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 4.7E-37 1.6E-41 306.0 10.4 129 162-301 28-167 (226)
4 3hvz_A Uncharacterized protein 99.5 2.5E-14 8.4E-19 120.6 6.1 62 536-597 2-67 (78)
5 3hvz_A Uncharacterized protein 98.8 6.7E-10 2.3E-14 93.6 2.1 52 335-393 9-70 (78)
6 2kmm_A Guanosine-3',5'-BIS(dip 98.8 1.2E-08 4.1E-13 82.9 7.5 55 542-596 3-61 (73)
7 2eki_A DRG 1, developmentally- 98.6 1.1E-07 3.6E-12 82.6 7.0 57 540-596 10-85 (93)
8 1wwt_A Threonyl-tRNA synthetas 98.3 1.1E-06 3.8E-11 74.2 6.6 59 539-597 9-72 (88)
9 2l32_A Small archaeal modifier 98.3 5.4E-07 1.8E-11 74.9 4.3 47 549-596 12-60 (74)
10 2hj1_A Hypothetical protein; s 98.2 8.2E-07 2.8E-11 77.7 4.3 46 551-596 29-83 (97)
11 1f0z_A THis protein; ubiquitin 98.1 2.6E-06 8.9E-11 68.7 5.3 51 546-596 4-60 (66)
12 1rws_A Hypothetical protein PF 98.1 1.1E-06 3.7E-11 73.1 2.9 51 546-596 19-71 (77)
13 1tyg_B YJBS; alpha beta barrel 98.0 6.4E-06 2.2E-10 70.6 6.0 53 544-596 22-81 (87)
14 1ryj_A Unknown; beta/alpha pro 98.0 6.3E-06 2.2E-10 67.3 5.5 50 547-596 9-64 (70)
15 2cu3_A Unknown function protei 98.0 9.4E-06 3.2E-10 65.0 5.8 50 546-596 3-58 (64)
16 2k5p_A THis protein, thiamine- 97.9 8.1E-06 2.8E-10 68.5 4.4 51 546-596 4-63 (78)
17 2kl0_A Putative thiamin biosyn 97.9 1.3E-05 4.4E-10 66.4 5.3 50 546-596 4-59 (73)
18 3po0_A Small archaeal modifier 97.7 3.7E-05 1.3E-09 64.9 5.1 47 550-596 20-83 (89)
19 1vjk_A Molybdopterin convertin 97.6 4.4E-05 1.5E-09 66.0 4.8 47 550-596 29-92 (98)
20 2q5w_D Molybdopterin convertin 97.6 2.6E-05 9E-10 63.9 2.7 47 550-596 18-71 (77)
21 1wxq_A GTP-binding protein; st 97.6 3.4E-05 1.2E-09 82.1 4.0 60 537-597 316-394 (397)
22 2eki_A DRG 1, developmentally- 97.3 8.3E-05 2.8E-09 64.6 2.3 52 342-395 30-91 (93)
23 1fm0_D Molybdopterin convertin 97.3 0.00028 9.4E-09 58.2 5.3 42 555-596 23-75 (81)
24 2kmm_A Guanosine-3',5'-BIS(dip 97.1 0.00019 6.4E-09 58.0 2.3 51 336-393 5-65 (73)
25 3rpf_C Molybdopterin convertin 97.0 0.00063 2.2E-08 55.7 4.8 46 550-596 14-68 (74)
26 2g1e_A Hypothetical protein TA 97.0 0.00064 2.2E-08 57.0 4.5 47 550-596 17-84 (90)
27 3dwg_C 9.5 kDa culture filtrat 96.6 0.0013 4.4E-08 55.9 3.8 44 552-596 21-87 (93)
28 1wwt_A Threonyl-tRNA synthetas 96.4 0.0012 4.2E-08 55.4 2.5 47 341-394 22-76 (88)
29 2l52_A Methanosarcina acetivor 96.2 0.0029 1E-07 54.7 3.6 45 551-596 22-93 (99)
30 2qjl_A URM1, ubiquitin-related 96.0 0.0056 1.9E-07 52.8 4.5 45 552-596 24-93 (99)
31 1tke_A Threonyl-tRNA synthetas 95.7 0.0033 1.1E-07 61.6 1.8 47 341-394 12-65 (224)
32 2k9x_A Tburm1, uncharacterized 95.3 0.017 6E-07 51.3 5.0 47 550-596 23-96 (110)
33 1v8c_A MOAD related protein; r 95.3 0.012 4E-07 56.0 4.2 46 550-596 16-81 (168)
34 1wgk_A Riken cDNA 2900073H19 p 94.3 0.056 1.9E-06 48.2 5.6 45 552-596 34-102 (114)
35 1wxq_A GTP-binding protein; st 94.3 0.0061 2.1E-07 64.8 -0.8 47 341-392 343-396 (397)
36 2hj1_A Hypothetical protein; s 86.4 0.2 6.8E-06 43.6 1.0 48 341-393 30-87 (97)
37 1tke_A Threonyl-tRNA synthetas 85.9 0.23 8E-06 48.4 1.4 47 395-483 17-64 (224)
38 1rws_A Hypothetical protein PF 83.5 0.39 1.3E-05 39.4 1.5 45 342-393 26-75 (77)
39 3fm8_A Kinesin-like protein KI 82.7 0.55 1.9E-05 42.3 2.3 23 573-595 91-113 (124)
40 4ejq_A Kinesin-like protein KI 80.8 0.76 2.6E-05 42.6 2.6 23 573-595 111-133 (154)
41 1f0z_A THis protein; ubiquitin 79.2 1 3.5E-05 35.6 2.5 46 341-393 10-64 (66)
42 2k6p_A Uncharacterized protein 79.1 1.2 4.2E-05 37.2 3.1 25 572-596 26-50 (92)
43 4a9a_A Ribosome-interacting GT 78.8 0.89 3E-05 48.1 2.6 41 556-596 323-374 (376)
44 1ryj_A Unknown; beta/alpha pro 78.1 1.3 4.4E-05 35.6 2.8 48 341-393 18-68 (70)
45 1tyg_B YJBS; alpha beta barrel 78.1 1.3 4.5E-05 37.6 3.0 44 342-392 31-84 (87)
46 2l32_A Small archaeal modifier 77.7 0.79 2.7E-05 37.6 1.4 47 341-393 15-64 (74)
47 4egx_A Kinesin-like protein KI 77.2 1.2 4.3E-05 42.5 2.9 22 574-595 142-163 (184)
48 1jal_A YCHF protein; nucleotid 76.4 2.9 9.9E-05 44.0 5.7 56 542-597 280-361 (363)
49 2kl0_A Putative thiamin biosyn 72.6 2.8 9.7E-05 34.1 3.5 27 368-396 36-66 (73)
50 1wln_A Afadin; beta sandwich, 72.3 1.5 5E-05 38.7 1.9 24 572-595 80-103 (120)
51 2dby_A GTP-binding protein; GD 71.6 3.2 0.00011 43.6 4.5 55 543-597 286-366 (368)
52 2cu3_A Unknown function protei 71.3 3.2 0.00011 32.5 3.5 24 368-393 35-62 (64)
53 1dm9_A Hypothetical 15.5 KD pr 70.6 3.1 0.00011 37.7 3.7 25 572-596 34-58 (133)
54 2k5p_A THis protein, thiamine- 70.0 2 6.7E-05 35.6 2.0 47 342-395 11-69 (78)
55 4h87_A Kanadaptin; FHA domain 69.1 2.8 9.4E-05 37.7 3.0 24 572-595 94-119 (130)
56 1ndd_A NEDD8, protein (ubiquit 66.6 21 0.00071 27.5 7.4 54 542-596 3-70 (76)
57 2ohf_A Protein OLA1, GTP-bindi 66.4 6.2 0.00021 42.0 5.4 47 550-596 317-386 (396)
58 3gqs_A Adenylate cyclase-like 65.2 2 6.8E-05 36.9 1.1 24 572-595 69-92 (106)
59 3a9j_A Ubiquitin; protein comp 63.0 26 0.00087 26.9 7.3 53 543-596 4-70 (76)
60 2q5w_D Molybdopterin convertin 61.7 6 0.0002 31.6 3.3 24 368-393 52-75 (77)
61 1e0g_A Membrane-bound lytic mu 61.3 2.7 9.2E-05 30.3 1.1 44 549-596 2-46 (48)
62 2kd0_A LRR repeats and ubiquit 60.5 31 0.0011 28.1 7.6 58 538-596 10-81 (85)
63 3mtn_B UBA80, ubcep1, ubiquiti 60.4 38 0.0013 26.7 8.0 55 542-597 6-74 (85)
64 4he6_A Peptidase family U32; u 60.3 11 0.00037 31.4 4.8 35 360-394 10-44 (89)
65 3po8_A RV0020C protein, putati 59.7 3.2 0.00011 35.1 1.5 23 572-595 65-87 (100)
66 2jqj_A DNA damage response pro 58.8 3.8 0.00013 37.5 1.8 24 572-595 87-111 (151)
67 3hx1_A SLR1951 protein; P74513 58.5 3.3 0.00011 37.2 1.4 23 572-595 82-104 (131)
68 1gxc_A CHK2, CDS1, serine/thre 56.0 4.5 0.00015 36.9 1.9 24 572-595 103-128 (149)
69 1lgp_A Cell cycle checkpoint p 55.6 3.8 0.00013 35.5 1.3 24 572-595 68-93 (116)
70 2dzi_A Ubiquitin-like protein 54.5 29 0.001 27.2 6.3 52 544-596 12-77 (81)
71 1p9k_A ORF, hypothetical prote 54.5 5.3 0.00018 32.5 1.9 41 556-596 19-71 (79)
72 2pie_A E3 ubiquitin-protein li 54.2 6.5 0.00022 35.4 2.6 24 572-595 75-100 (138)
73 2xt9_B Putative signal transdu 54.0 5 0.00017 34.9 1.8 23 572-595 73-95 (115)
74 1frr_A Ferredoxin I; electron 53.5 19 0.00064 29.7 5.2 27 544-570 5-33 (95)
75 1uht_A Expressed protein; FHA 52.2 4.1 0.00014 35.5 0.9 24 572-595 76-101 (118)
76 3n3k_B Ubiquitin; hydrolase, p 52.2 38 0.0013 26.7 6.7 54 542-596 6-73 (85)
77 1ni3_A YCHF GTPase, YCHF GTP-b 51.8 11 0.00037 39.9 4.3 55 542-596 308-388 (392)
78 1r21_A Antigen KI-67; beta san 51.7 4.6 0.00016 35.7 1.1 24 572-595 75-98 (128)
79 1awd_A Ferredoxin; electron tr 51.6 22 0.00075 29.4 5.3 37 546-582 7-56 (94)
80 1yx5_B Ubiquitin; proteasome, 51.5 45 0.0015 27.6 7.3 54 542-596 3-70 (98)
81 1g6g_A Protein kinase RAD53; b 50.8 6.5 0.00022 34.8 2.0 24 572-595 79-104 (127)
82 1dmz_A Protein (protein kinase 49.6 4.2 0.00014 37.7 0.5 24 572-595 83-108 (158)
83 2vqe_D 30S ribosomal protein S 49.3 11 0.00038 36.7 3.5 39 558-596 99-149 (209)
84 1c05_A Ribosomal protein S4 de 49.2 12 0.0004 34.9 3.5 25 572-596 76-101 (159)
85 1sif_A Ubiquitin; hydrophobic 49.1 61 0.0021 26.3 7.6 58 538-596 8-79 (88)
86 2faz_A Ubiquitin-like containi 48.5 62 0.0021 25.2 7.3 53 543-596 6-74 (78)
87 3els_A PRE-mRNA leakage protei 48.0 5.5 0.00019 37.1 1.1 24 572-595 117-142 (158)
88 2csw_A Ubiquitin ligase protei 47.9 6.5 0.00022 35.7 1.6 24 572-595 83-108 (145)
89 3phx_B Ubiquitin-like protein 47.0 54 0.0018 25.7 6.8 54 542-596 7-74 (79)
90 2kb3_A Oxoglutarate dehydrogen 46.7 6 0.0002 36.1 1.1 23 572-595 108-130 (143)
91 1qu5_A Protein kinase SPK1; FH 45.3 5.3 0.00018 38.0 0.5 25 571-595 106-132 (182)
92 1g3g_A Protien kinase SPK1; FH 45.2 9 0.00031 35.6 2.1 24 572-595 107-132 (164)
93 1mzk_A Kinase associated prote 45.1 6.8 0.00023 35.3 1.2 24 572-595 76-109 (139)
94 1fm0_D Molybdopterin convertin 44.9 17 0.00058 29.0 3.5 23 368-392 56-78 (81)
95 3elv_A PRE-mRNA leakage protei 44.8 7.7 0.00026 37.9 1.6 24 572-595 164-189 (205)
96 1xlq_A Putidaredoxin, PDX; [2F 43.8 19 0.00066 30.4 3.8 27 544-570 4-33 (106)
97 2uyz_B Small ubiquitin-related 43.6 37 0.0012 26.7 5.3 53 543-596 7-73 (79)
98 2kfu_A RV1827 PThr 22; FHA dom 43.3 8.9 0.00031 35.8 1.7 23 572-595 117-139 (162)
99 1t3q_A Quinoline 2-oxidoreduct 42.5 26 0.00089 32.7 4.8 41 542-582 11-66 (168)
100 3ah7_A [2Fe-2S]ferredoxin; [2F 42.4 14 0.00047 31.8 2.7 34 546-579 13-59 (113)
101 3dbh_I NEDD8; cell cycle, acti 42.3 86 0.0029 24.8 7.4 55 542-597 15-83 (88)
102 1uwm_A Ferredoxin VI, FDVI; el 42.2 19 0.00065 30.5 3.5 27 544-570 4-33 (106)
103 4fbj_B NEDD8; effector-HOST ta 42.2 1E+02 0.0034 25.0 7.9 54 543-597 4-71 (88)
104 3po0_A Small archaeal modifier 41.1 22 0.00075 29.1 3.6 23 368-392 64-86 (89)
105 3oun_A Putative uncharacterize 41.0 9.3 0.00032 35.7 1.5 23 572-595 127-149 (157)
106 1a70_A Ferredoxin; iron-sulfur 41.0 31 0.0011 28.7 4.6 39 544-582 6-58 (97)
107 1vjk_A Molybdopterin convertin 41.0 21 0.0007 30.1 3.5 23 368-392 73-95 (98)
108 1wyw_B Ubiquitin-like protein 40.8 45 0.0015 27.8 5.6 53 543-596 25-91 (97)
109 2wlb_A ETP1-FD, electron trans 40.5 28 0.00097 29.2 4.4 29 542-570 5-36 (103)
110 3kt9_A Aprataxin; FHA domain, 39.0 11 0.00038 32.8 1.5 23 574-596 66-90 (102)
111 1ffv_A CUTS, iron-sulfur prote 38.7 38 0.0013 31.7 5.3 41 542-582 5-60 (163)
112 1i7h_A Ferredoxin; 2Fe-2S,elec 37.7 18 0.00062 31.0 2.7 24 547-570 14-37 (111)
113 1b9r_A Protein (terpredoxin); 37.6 23 0.00079 29.9 3.3 28 543-570 3-33 (105)
114 1wh3_A 59 kDa 2'-5'-oligoadeny 37.5 61 0.0021 25.8 5.8 53 543-596 11-77 (87)
115 3k9o_B Ubiquitin, UBB+1; E2-25 37.4 94 0.0032 25.2 7.0 53 543-596 5-71 (96)
116 3m62_B UV excision repair prot 37.1 1.3E+02 0.0043 25.5 8.0 54 543-597 5-72 (106)
117 2bwf_A Ubiquitin-like protein 36.6 1.4E+02 0.0048 22.8 7.7 51 544-596 9-73 (77)
118 3v6c_B Ubiquitin; structural g 36.4 1.2E+02 0.0041 24.5 7.5 54 543-597 21-88 (91)
119 3va4_A Mediator of DNA damage 36.1 13 0.00046 33.3 1.7 24 572-595 89-116 (132)
120 3bbn_D Ribosomal protein S4; s 36.0 21 0.00073 34.6 3.2 25 572-596 114-139 (201)
121 2bt6_A Adrenodoxin 1; rutheniu 35.2 27 0.00094 29.6 3.4 28 543-570 9-39 (108)
122 3lxf_A Ferredoxin; iron, iron- 34.8 35 0.0012 29.0 4.1 28 543-570 4-33 (104)
123 1we6_A Splicing factor, putati 34.7 74 0.0025 27.0 6.1 54 542-596 30-101 (111)
124 3goe_A DNA repair protein RAD6 34.4 27 0.00092 29.5 3.0 47 551-597 23-81 (82)
125 1vct_A Hypothetical protein PH 34.1 35 0.0012 32.4 4.4 41 556-596 135-180 (205)
126 2jpe_A Nuclear inhibitor of pr 34.0 8.3 0.00028 34.7 -0.1 24 572-595 100-125 (140)
127 1n62_A Carbon monoxide dehydro 33.6 51 0.0017 30.9 5.3 42 542-583 5-61 (166)
128 2y5c_A Adrenodoxin-like protei 33.5 32 0.0011 29.3 3.6 28 543-570 8-38 (109)
129 4hcn_B Polyubiquitin, ubiquiti 33.3 1.2E+02 0.004 25.1 7.0 53 544-597 27-93 (98)
130 1doi_A 2Fe-2S ferredoxin; halo 33.1 39 0.0013 30.1 4.2 37 544-580 31-80 (128)
131 1iue_A Ferredoxin; electron tr 32.8 56 0.0019 27.2 5.0 38 544-581 6-57 (98)
132 1l5p_A Ferredoxin; [2Fe-2S] cl 32.5 23 0.00079 29.4 2.5 27 544-570 4-32 (93)
133 2ff4_A Probable regulatory pro 32.4 14 0.00047 38.5 1.3 24 572-595 348-371 (388)
134 1frd_A Heterocyst [2Fe-2S] fer 31.7 58 0.002 26.9 4.9 33 549-581 15-59 (98)
135 2ojr_A Ubiquitin; lanthide-bin 31.0 1.5E+02 0.0051 25.1 7.5 54 542-596 38-105 (111)
136 2pia_A Phthalate dioxygenase r 30.8 92 0.0032 31.1 7.0 42 540-581 237-290 (321)
137 1rm6_C 4-hydroxybenzoyl-COA re 30.4 44 0.0015 31.0 4.2 41 542-582 4-59 (161)
138 4dwf_A HLA-B-associated transc 30.0 96 0.0033 24.9 5.8 54 542-596 8-74 (90)
139 1wy8_A NP95-like ring finger p 30.0 1.2E+02 0.004 24.3 6.3 53 543-596 11-79 (89)
140 1jq4_A Methane monooxygenase c 29.7 27 0.00092 29.1 2.4 28 543-570 7-37 (98)
141 3rpf_C Molybdopterin convertin 29.0 41 0.0014 26.7 3.3 24 368-392 48-71 (74)
142 2g1e_A Hypothetical protein TA 28.6 37 0.0013 27.5 3.0 23 368-392 61-87 (90)
143 1wri_A Ferredoxin II, ferredox 28.5 77 0.0026 26.0 5.0 36 546-582 8-56 (93)
144 3hui_A Ferredoxin; cytochrome 28.1 36 0.0012 30.4 3.0 29 542-570 23-54 (126)
145 3r8n_D 30S ribosomal protein S 27.4 11 0.00037 36.8 -0.5 25 572-596 120-145 (205)
146 3a4r_A Nfatc2-interacting prot 27.1 2.3E+02 0.0079 22.6 7.6 52 544-596 12-78 (79)
147 2kzr_A Ubiquitin thioesterase 26.7 57 0.002 26.4 3.9 52 543-595 4-74 (86)
148 1czp_A Ferredoxin I; [2Fe-2S] 26.7 80 0.0027 26.1 4.9 33 549-581 15-59 (98)
149 1v5o_A 1700011N24RIK protein; 26.0 1.6E+02 0.0056 24.5 6.7 53 543-596 11-82 (102)
150 2l7r_A Ubiquitin-like protein 26.0 1.6E+02 0.0055 24.1 6.6 52 544-596 24-87 (93)
151 3ie4_A GRAM-negative binding p 25.9 62 0.0021 28.3 4.1 57 333-390 7-78 (107)
152 2klc_A Ubiquilin-1; ubiquitin- 25.8 2E+02 0.0069 23.9 7.3 47 549-596 34-94 (101)
153 3b1l_X E3 ubiquitin-protein li 31.4 15 0.0005 28.7 0.0 53 543-596 4-70 (76)
154 4eew_A Large proline-rich prot 25.5 1.6E+02 0.0056 23.3 6.5 53 543-596 21-86 (88)
155 2hj8_A Interferon-induced 17 k 25.3 76 0.0026 25.7 4.4 53 543-596 8-74 (88)
156 3u7z_A Putative metal binding 24.8 50 0.0017 28.7 3.2 44 552-596 25-96 (101)
157 3vdz_A Ubiquitin-40S ribosomal 24.6 2.3E+02 0.0078 24.0 7.5 54 542-596 38-105 (111)
158 1yqb_A Ubiquilin 3; structural 24.2 1.4E+02 0.0048 25.0 6.0 52 544-596 27-91 (100)
159 1nyr_A Threonyl-tRNA synthetas 23.7 21 0.00072 39.9 0.8 47 341-394 14-67 (645)
160 2bps_A YUKD protein; ubiquitin 23.6 38 0.0013 28.3 2.2 45 552-596 21-81 (81)
161 3dwg_C 9.5 kDa culture filtrat 23.4 62 0.0021 26.6 3.5 23 368-392 64-90 (93)
162 1wx7_A Ubiquilin 3; ubiquitin- 23.3 1.4E+02 0.0049 24.9 5.9 53 543-596 21-86 (106)
163 1ttn_A DC-UBP, dendritic cell- 23.1 1.4E+02 0.0049 25.0 5.8 54 542-596 26-93 (106)
164 3jxo_A TRKA-N domain protein; 22.0 26 0.00091 28.0 0.9 41 557-597 29-71 (86)
165 1v5t_A 8430435I17RIK protein; 20.9 1.8E+02 0.0063 23.6 5.9 49 548-596 15-80 (90)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=3.3e-63 Score=528.22 Aligned_cols=200 Identities=38% Similarity=0.656 Sum_probs=171.9
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHhhhhhccChHHHHHHHHHHhhccCCCcccccccccccccCC
Q 007593 4 EFSYALPPAKARAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSS 83 (597)
Q Consensus 4 ~~~~alp~~Kq~~iA~ETl~iyaPLA~RLG~~~iK~ELEDL~F~~L~P~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (597)
|+..++|++||+++|+|||+|||||||||||+.||+|||||||+||+|+.|+.|.+.|.+
T Consensus 150 Rtl~~~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~-------------------- 209 (393)
T 1vj7_A 150 RTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNE-------------------- 209 (393)
T ss_dssp HTCC------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--------------------
T ss_pred CchhhCChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHH--------------------
Confidence 566889999999999999999999999999999999999999999999999999999875
Q ss_pred CCCccCcCCCCCcccchhhhhhhhhhhhhhccccchhhhhHHHHHHHHHHHhhHHHHHhHHHHHhhhhhhhhHHHHHHHH
Q 007593 84 PPLDERTASDDESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEAL 163 (597)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~v~~~d~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~L 163 (597)
.|..|+.+++.+... +++.|
T Consensus 210 --------------------------------------~r~~r~~~i~~i~~~----------------------l~~~L 229 (393)
T 1vj7_A 210 --------------------------------------KRREREALVDDIVTK----------------------IKSYT 229 (393)
T ss_dssp --------------------------------------THHHHHHHHHHHHHH----------------------HHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHHHH----------------------HHHHH
Confidence 566777888776542 34444
Q ss_pred HHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCCcccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccC
Q 007593 164 EKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIP 243 (597)
Q Consensus 164 ~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~p 243 (597)
.+ .|+++.|+||+|++||||+||+|++.+|++|+|++||||||++ +.|||.++|+||+.|+|
T Consensus 230 ~~---------~gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~---------~~dcy~vl~~i~~~~~~ 291 (393)
T 1vj7_A 230 TE---------QGLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRP 291 (393)
T ss_dssp HT---------TTCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCB
T ss_pred Hh---------cCCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC---------HHHHHHHHHHHHhcCCC
Confidence 43 2788999999999999999999999999999999999999987 78999999999999999
Q ss_pred cCCcccccccCCCCCCcceeEEEEEcCCCceEEEEEeehhhHHHHHhhhhhhhhccccC
Q 007593 244 IDGEFDDYIVNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 302 (597)
Q Consensus 244 ip~r~kDyIa~PK~nGYqSLHttV~gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~ 302 (597)
+|++|||||++||+||||||||+|.+|+| ++||||||..||.|||+||+|||+||++.
T Consensus 292 ~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~ 349 (393)
T 1vj7_A 292 MPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGV 349 (393)
T ss_dssp CTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC--------
T ss_pred CCCcccccccCCCcCCcceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCC
Confidence 99999999999999999999999999999 99999999999999999999999999864
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-43 Score=358.51 Aligned_cols=138 Identities=25% Similarity=0.265 Sum_probs=119.6
Q ss_pred cCCCCCceEEEEEeecChHHHHHHHHhcCCCCc----ccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHHHhcccCcCC
Q 007593 171 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 246 (597)
Q Consensus 171 ~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiIh~~~~pip~ 246 (597)
..+.| +. .|+||+|+++||++||+|++.+++ +|+|++||||||.+ ++|||.++++||+.|.|.|.
T Consensus 66 ~~~~~-i~-~V~~RvKs~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~---------~~D~y~v~~~I~~~~~~~~~ 134 (255)
T 3l9d_A 66 KRHSP-IE-FVTGRVKPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF---------VDDVNDVLELLRQRKDMKVI 134 (255)
T ss_dssp TSCCS-CC-EEEEEECCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS---------TTHHHHHHHHHHTCSSSEEE
T ss_pred hccCC-cc-eEEeEEcCHHHHHHHHHhcCCCccchhhhccccceEEEEEeC---------HHHHHHHHHHHHhcCCCcee
Confidence 34444 33 699999999999999999999887 79999999999997 68999999999999999999
Q ss_pred cccccccCCCCCCcceeEEEEE-------cCCCceEEEEEeehhhHHHHHhhhhhhhhccccCCccccccccccchHhhh
Q 007593 247 EFDDYIVNPKPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEAS 319 (597)
Q Consensus 247 r~kDyIa~PK~nGYqSLHttV~-------gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~~~~~~~~s~~~~~l~~l~ 319 (597)
++||||++||+|||||||++|. ++.|.++||||||..||.|||+||++||+|+... +. .+.+.+..+.
T Consensus 135 ~~KDYIa~PK~nGYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~~~-p~----~i~r~L~~~A 209 (255)
T 3l9d_A 135 QERDYINNLKPSGYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHGEF-PE----DIKRRLELTS 209 (255)
T ss_dssp EEEEESCC-CCCSCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCC-CH----HHHHHHHHHH
T ss_pred eeeccccCCCCCCceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCCCC-cH----HHHHHHHHHH
Confidence 9999999999999999999998 5578999999999999999999999999998532 21 4667777777
Q ss_pred ccCCC
Q 007593 320 SSLSK 324 (597)
Q Consensus 320 ~lle~ 324 (597)
++++.
T Consensus 210 ~~l~~ 214 (255)
T 3l9d_A 210 KIAFQ 214 (255)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=4.7e-37 Score=305.95 Aligned_cols=129 Identities=28% Similarity=0.362 Sum_probs=114.3
Q ss_pred HHHHHHhhccCCCCCceEEEEEeecChHHHHHHHHhcCCCCc----ccccceeEEEEEeCCCCCCCCCcHHHHHHHHHHH
Q 007593 162 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 237 (597)
Q Consensus 162 ~L~~el~~~~~~~~gi~~~V~gRvK~~ySI~~Km~rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~v~dCY~vlgiI 237 (597)
.|.+++.....+.+ + ..|+||+|+++||++||.|++.+++ +|+|++|+||||.+ ++|||.++++|
T Consensus 28 ~l~~~~~~~~~~~~-i-~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~---------~~d~y~v~~~i 96 (226)
T 2be3_A 28 GIRKQYRKQNKHSP-I-EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQF---------VDDVKEVVDIL 96 (226)
T ss_dssp HHHHHHHHTTCCCS-E-EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESC---------GGGHHHHHHHH
T ss_pred HHHHHHHHhhCCCC-c-ceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcC---------HHHHHHHHHHH
Confidence 44455544444433 3 2599999999999999999999988 89999999999987 68999999999
Q ss_pred HhcccCcCCcccccccCCCCCCcceeEEEEE-------cCCCceEEEEEeehhhHHHHHhhhhhhhhcccc
Q 007593 238 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 301 (597)
Q Consensus 238 h~~~~pip~r~kDyIa~PK~nGYqSLHttV~-------gp~g~~vEVQIRT~~Mh~wAE~G~aAHw~YK~~ 301 (597)
|+.|.+.|.++||||++||+|||||||++|. ++.|.++||||||..||.|||+||++||+|+..
T Consensus 97 ~~~~~~~~~~~kDyI~~PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~ 167 (226)
T 2be3_A 97 HKRQDMRIIQERDYITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGD 167 (226)
T ss_dssp HTCSSEEEEEEEETTTTCCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred HhccCCceeeecchhhcCCCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCC
Confidence 9999999999999999999999999999997 567889999999999999999999999999864
No 4
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.49 E-value=2.5e-14 Score=120.65 Aligned_cols=62 Identities=29% Similarity=0.387 Sum_probs=54.2
Q ss_pred CCCCceEEEEccCCceEEcCCCCCHHHHHHHhCC----cceEEEECCeecCCCCcCCCCCEEEEeC
Q 007593 536 VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVGL----EGKLVLVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 536 ~l~~ev~~vf~p~g~~~~lp~GaTv~D~a~~lgi----~~~~~~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
+|+.+.++||+|+|++++||+|+|+.|||++++- .+..|+|||+.++++++|++||+|+|++
T Consensus 2 ~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 2 DLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLT 67 (78)
T ss_dssp ----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEE
T ss_pred CCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEc
Confidence 5777778899999999999999999999999863 4899999999999999999999999973
No 5
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.84 E-value=6.7e-10 Score=93.56 Aligned_cols=52 Identities=23% Similarity=0.423 Sum_probs=48.1
Q ss_pred cccccc---ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 335 DLFQKY---SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 335 ~vftPk---~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
.+|||+ ..||.|+|++|| +|++|++|+| ||+ +++|+++|++||+|+|+|+++
T Consensus 9 ~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----NG~--~v~L~~~L~~gd~VeIit~~~ 70 (78)
T 3hvz_A 9 FVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----DGR--IVPIDYKVKTGEIIDVLTTKE 70 (78)
T ss_dssp EEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----TTE--EECTTCBCCTTCBEEEEECC-
T ss_pred EEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEE-----CCE--EcCCCcccCCCCEEEEEccCc
Confidence 379998 789999999999 6889999999 999 899999999999999999987
No 6
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.78 E-value=1.2e-08 Score=82.94 Aligned_cols=55 Identities=42% Similarity=0.417 Sum_probs=50.3
Q ss_pred EEEEccCCceEEcCCCCCHHHHHHHhCC----cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 542 VIVCWPNGEIMRLRSGSTAADAAMKVGL----EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~~~lp~GaTv~D~a~~lgi----~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+.|+.|+|+.+++|+|+|+.|+|+.++. .+..|.|||+.++++++|++||+|+|+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veiv 61 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVL 61 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEE
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEE
Confidence 4588999999999999999999999964 377889999999999999999999986
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=98.55 E-value=1.1e-07 Score=82.65 Aligned_cols=57 Identities=32% Similarity=0.422 Sum_probs=48.8
Q ss_pred ceEEEEc-cCCce------EEc-CCCCCHHHHHHHhCCc----ceEEEE-------CCeecCCCCcCCCCCEEEEe
Q 007593 540 EVVIVCW-PNGEI------MRL-RSGSTAADAAMKVGLE----GKLVLV-------NGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 540 ev~~vf~-p~g~~------~~l-p~GaTv~D~a~~lgi~----~~~~~V-------NGr~~~l~t~L~dGD~V~i~ 596 (597)
+.+.||| |+|+. +.| |.|+||.|||++++-+ .+-|.| |||.|.++++|+|||+|+|.
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv 85 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 85 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEE
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEE
Confidence 4556999 88874 888 9999999999999754 566665 99999999999999999986
No 8
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.28 E-value=1.1e-06 Score=74.24 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=51.7
Q ss_pred CceEEEEccCCceEEcCC-CCCHHHHHHHhC--C--cceEEEECCeecCCCCcCCCCCEEEEeC
Q 007593 539 GEVVIVCWPNGEIMRLRS-GSTAADAAMKVG--L--EGKLVLVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 539 ~ev~~vf~p~g~~~~lp~-GaTv~D~a~~lg--i--~~~~~~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
...+.|..|+|.+.++|. |+|+.|+|+.++ + .+.+|+|||++++|+++|.+|+.|+|+.
T Consensus 9 ~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLK 72 (88)
T ss_dssp CCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECS
T ss_pred CCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEe
Confidence 345558889999999998 999999999984 3 3788999999999999999999999863
No 9
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=98.27 E-value=5.4e-07 Score=74.95 Aligned_cols=47 Identities=28% Similarity=0.268 Sum_probs=41.8
Q ss_pred CceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 549 GEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 549 g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
...+++|+|+|+.|++..||++ -.+++|||+.+|+++.+. ||+|+|+
T Consensus 12 ~~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVE-VDRVKVL 60 (74)
T ss_dssp EEEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSC-CCCEEEC
T ss_pred ceeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCC-CCEEEEE
Confidence 3458999999999999999997 238999999999999885 9999986
No 10
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=98.21 E-value=8.2e-07 Score=77.68 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=41.1
Q ss_pred eEEcCCCCCHHHHHHHhCCc---------ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 551 IMRLRSGSTAADAAMKVGLE---------GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~lgi~---------~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
.+++|+|+|+.|++.++|+. ...+.|||+.++++++|++||||||.
T Consensus 29 ~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 29 SFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEEC
T ss_pred EEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEE
Confidence 34789999999999999983 25699999999999999999999984
No 11
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=98.12 E-value=2.6e-06 Score=68.65 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=46.2
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
+=||+.+++|+|+|+.|+...++++ ...+.|||+.++. +++|++||+|+|+
T Consensus 4 ~vNg~~~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 4 LFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLF 60 (66)
T ss_dssp EESSCEECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEE
T ss_pred EECCEEEEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEE
Confidence 4489999999999999999999986 4569999999998 8999999999986
No 12
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=98.11 E-value=1.1e-06 Score=73.10 Aligned_cols=51 Identities=35% Similarity=0.513 Sum_probs=46.1
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+|+.+++|+|+|+.|+...++++ ...+.|||+.++.+++|++||+|+|+
T Consensus 19 ~~n~~~~~~~~~~Tv~dLl~~L~~~~~~v~VavNg~~v~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 19 RNIEKEIEWREGMKVRDILRAVGFNTESAIAKVNGKVVLEDDEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCCCCCCSSCCHHHHHHTTTCSSCSSCEEETTEEECSSSCCCSSCCCBCS
T ss_pred ccCCEEEECCCCCcHHHHHHHhCCCCcCEEEEECCEECCCCCCcCCCCEEEEE
Confidence 4578888999999999999999986 34799999999999999999999985
No 13
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=98.02 E-value=6.4e-06 Score=70.65 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=47.7
Q ss_pred EEccCCceEEcCCC-CCHHHHHHHhCCc--ceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 544 VCWPNGEIMRLRSG-STAADAAMKVGLE--GKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~~~lp~G-aTv~D~a~~lgi~--~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
-++=||+.+++|+| +|+.|+...|+++ ...+.|||+.++. +++|++||+|+|+
T Consensus 22 ~I~vNGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 22 MLQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIV 81 (87)
T ss_dssp CEEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEE
T ss_pred EEEECCEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEE
Confidence 45679999999998 9999999999986 4569999999998 7999999999986
No 14
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=98.01 E-value=6.3e-06 Score=67.34 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=44.7
Q ss_pred cCCce----EEcCCCCCHHHHHHHhCCc--ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 547 PNGEI----MRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 547 p~g~~----~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
=||+. +++|+|.|+.|+...+|++ ...+.|||..++.++.|++||+|+|+
T Consensus 9 vNg~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~ii 64 (70)
T 1ryj_A 9 VITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVI 64 (70)
T ss_dssp EEETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEEE
T ss_pred EeCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEEE
Confidence 35555 9999999999999999986 45799999999999999999999986
No 15
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=97.97 E-value=9.4e-06 Score=65.04 Aligned_cols=50 Identities=42% Similarity=0.642 Sum_probs=44.7
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCCC----CcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLPN----TELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l~----t~L~dGD~V~i~ 596 (597)
+=||+.+++ +|+|+.|+...++++ ...+.|||+.++.+ ++|++||+|+|+
T Consensus 3 ~vNg~~~~~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 3 WLNGEPRPL-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EETTEEECC-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEE
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECCccccCCcCCCCCCEEEEE
Confidence 348999999 999999999999986 45699999999976 999999999986
No 16
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=97.90 E-value=8.1e-06 Score=68.49 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=46.1
Q ss_pred ccCCceEEcC--CCCCHHHHHHHhCCc---ceEEEECCeecCCC----CcCCCCCEEEEe
Q 007593 546 WPNGEIMRLR--SGSTAADAAMKVGLE---GKLVLVNGQLVLPN----TELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp--~GaTv~D~a~~lgi~---~~~~~VNGr~~~l~----t~L~dGD~V~i~ 596 (597)
+=||+.+++| +|+|+.|++..+|++ ...+.|||..+|-+ +.|++||+|+|+
T Consensus 4 ~vNGe~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 4 TVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EETTEEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EECCEEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 4489999999 999999999999987 34699999999997 999999999996
No 17
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=97.88 E-value=1.3e-05 Score=66.37 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=44.7
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCc--ceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLE--GKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~--~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
+=||+.+++ +|.|+.|++..+|++ ...+.|||..+|. ++.|++||+|+|+
T Consensus 4 ~vNG~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 4 TINGEQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEIL 59 (73)
T ss_dssp EETTEEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEE
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEE
Confidence 348999999 999999999999986 3469999999998 4899999999996
No 18
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=97.68 E-value=3.7e-05 Score=64.88 Aligned_cols=47 Identities=19% Similarity=0.098 Sum_probs=41.0
Q ss_pred ceEEcCCCCCHHHHHHHhCCc-----------------ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLE-----------------GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~-----------------~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+++|+|+|+.|+..+|+.+ ...+.|||+.++++++|++||.|+|+
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEE
Confidence 457899999999999998532 15899999999999999999999986
No 19
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=97.63 E-value=4.4e-05 Score=65.97 Aligned_cols=47 Identities=34% Similarity=0.424 Sum_probs=41.2
Q ss_pred ceEEcCCCCCHHHHHHHhCC-----------------cceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGL-----------------EGKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi-----------------~~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+++|+|+|+.|+...|+. +...+.|||+.++++++|++||+|+|+
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEE
Confidence 46788999999999999853 235799999999999999999999986
No 20
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=97.59 E-value=2.6e-05 Score=63.87 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=40.7
Q ss_pred ceEEcCCCCCHHHHHHHhCCc-----ce--EEEECCeecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLE-----GK--LVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~-----~~--~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+++|+|+|+.|+...|+.+ .. .+.|||+.++.+++|++||+|+|+
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALI 71 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEE
Confidence 456789999999999998653 23 799999999999999999999986
No 21
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.56 E-value=3.4e-05 Score=82.14 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=50.9
Q ss_pred CCCceEEEEc---------cCC----ceEEcCCCCCHHHHHHHhCCc----ceEE--EECCeecCCCCcCCCCCEEEEeC
Q 007593 537 VPGEVVIVCW---------PNG----EIMRLRSGSTAADAAMKVGLE----GKLV--LVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 537 l~~ev~~vf~---------p~g----~~~~lp~GaTv~D~a~~lgi~----~~~~--~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
+++ .++||| |+| +.+.||.|+||.|+|++++-+ +..| .+||+.++++++|+|||+|+|++
T Consensus 316 ~L~-li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 316 LLK-LIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp TSC-EEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEE
T ss_pred HhC-CeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEe
Confidence 444 455999 889 999999999999999999754 4445 67999999999999999999963
No 22
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=97.29 E-value=8.3e-05 Score=64.56 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=43.9
Q ss_pred cc-cCCCCeeee-------cCCeeeeeEEEE--EccCCeEEeeeccccccCCceEEEeCCCCCc
Q 007593 342 SL-KMGHPVIRV-------EGSNLLAAVIIR--VEKGGRELLVAVSFGLAASEVVADRRPSFQI 395 (597)
Q Consensus 342 ~L-p~Gat~Ldf-------iG~~~~~AkV~~--v~~ng~~~lv~l~~~L~~gD~Vei~T~k~p~ 395 (597)
-| |.|+||.|| +|.+|..|.|-. +..||+ -|++++.|++||+|+|++.+++.
T Consensus 30 iL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~q--rVgldh~L~d~DVV~Iv~~~~~~ 91 (93)
T 2eki_A 30 VLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQ--KVGKDHTLEDEDVIQIVKKSGPS 91 (93)
T ss_dssp EEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSE--EECSSCCCCSSEEECEEECCSCC
T ss_pred EEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCE--ECCCCcEecCCCEEEEEeCCCCC
Confidence 57 999999999 899999998622 333788 69999999999999999987753
No 23
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=97.28 E-value=0.00028 Score=58.18 Aligned_cols=42 Identities=26% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHhCCc-----------ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 555 RSGSTAADAAMKVGLE-----------GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 555 p~GaTv~D~a~~lgi~-----------~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
|+|+|+.|+...|+.. ...+.|||+.++++++|++||+|+|+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEe
Confidence 7899999999999632 24799999999999999999999986
No 24
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=97.09 E-value=0.00019 Score=57.97 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=43.2
Q ss_pred ccccc---ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 336 LFQKY---SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 336 vftPk---~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
++.|. +.+|.|.|+.|+ ++..+++|+| ||+ ++++++.|+.||.|+++|..+
T Consensus 5 i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v-----Ng~--lvdl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 5 VFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKV-----NHK--LVPLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEE-----TTE--ECCTTCBCCSSSBEEEEECCC
T ss_pred EEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEE-----CCE--EeCCCcCcCCCCEEEEEECCC
Confidence 44454 578999999998 2467899998 999 899999999999999999876
No 25
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=97.02 E-value=0.00063 Score=55.69 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=39.5
Q ss_pred ceEEcCCCCCHHHHHHHhCCc--------ceEEEECCee-cCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLE--------GKLVLVNGQL-VLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~--------~~~~~VNGr~-~~l~t~L~dGD~V~i~ 596 (597)
+.+++ +|+|+.|+...|+.. ...+.|||+. +.++++|++||.|+|+
T Consensus 14 ~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 14 ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 34677 899999999998653 4679999999 8899999999999986
No 26
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=96.96 E-value=0.00064 Score=56.96 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=39.9
Q ss_pred ceEEcCCCCCHHHHHHHhCC-----------------cceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGL-----------------EGKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi-----------------~~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
..++++.|+|+.|+...|+. +...+.|||+.++ ++++|++||.|+|+
T Consensus 17 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 17 KEETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp SEEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred CEEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 34678889999999999853 3457999999997 89999999999986
No 27
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=96.62 E-value=0.0013 Score=55.86 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=36.9
Q ss_pred EEcCCCCCHHHHHHHhCCc-------------------ceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 552 MRLRSGSTAADAAMKVGLE-------------------GKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 552 ~~lp~GaTv~D~a~~lgi~-------------------~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
++ ++|+|+.|+...|... ...+.|||+.++ ++++|++||.|+|+
T Consensus 21 ~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 21 VS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp EE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred Ee-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 45 5789999999998421 257999999999 79999999999985
No 28
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=96.43 E-value=0.0012 Score=55.40 Aligned_cols=47 Identities=6% Similarity=-0.047 Sum_probs=41.6
Q ss_pred ccccC-CCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCCC
Q 007593 341 SSLKM-GHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 394 (597)
Q Consensus 341 ~~Lp~-Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~p 394 (597)
+.+|. |.|++|| .+.+|++|+| ||+ +++|++.|+.++.|+++|.+.+
T Consensus 22 ~~~~~~~~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~d~~ve~vt~~~~ 76 (88)
T 1wwt_A 22 VDAESWKTTPYQIACGISQGLADNTVIAKV-----NNV--VWDLDRPLEEDCTLELLKFEDE 76 (88)
T ss_dssp EEEETTTCCHHHHHHHSSTTTGGGCCCEEE-----SSS--EECSSSCCCSSEEEEECSSCCS
T ss_pred EEcccCCCCHHHHHHHhhhccccceEEEEE-----CCE--EECCCcCcCCCCEEEEEeCCCH
Confidence 45687 9999998 4678999998 999 8999999999999999998875
No 29
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=96.18 E-value=0.0029 Score=54.72 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=37.1
Q ss_pred eEEcCCCCCHHHHHHHhCCc-----c-----------e-------EEEECCeec----CCCCcCCCCCEEEEe
Q 007593 551 IMRLRSGSTAADAAMKVGLE-----G-----------K-------LVLVNGQLV----LPNTELKDGDIVEVR 596 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~lgi~-----~-----------~-------~~~VNGr~~----~l~t~L~dGD~V~i~ 596 (597)
.++++ |+|+.|+...|+.+ - . .+.|||+.+ .++++|++||.|+|+
T Consensus 22 ~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 22 ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred eEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 34566 89999999998532 1 2 799999999 789999999999986
No 30
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=96.01 E-value=0.0056 Score=52.81 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=36.3
Q ss_pred EEcC--CCCCHHHHHHHhC--C---c--------------ceEEEECCeecC----CCCcCCCCCEEEEe
Q 007593 552 MRLR--SGSTAADAAMKVG--L---E--------------GKLVLVNGQLVL----PNTELKDGDIVEVR 596 (597)
Q Consensus 552 ~~lp--~GaTv~D~a~~lg--i---~--------------~~~~~VNGr~~~----l~t~L~dGD~V~i~ 596 (597)
+++| +|+|+.|+...|. . . ..++.|||+.+. ++|+|++||.|.|+
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 4667 8999999999873 1 1 135999999864 89999999999985
No 31
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=95.67 E-value=0.0033 Score=61.58 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=43.1
Q ss_pred ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCCC
Q 007593 341 SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 394 (597)
Q Consensus 341 ~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~p 394 (597)
+++|.|.|++|| .+.+|++|+| ||+ +++|++.|+.|+.|+++|.+.+
T Consensus 12 ~~~~~g~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~~~~ve~it~~~~ 65 (224)
T 1tke_A 12 RHYDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDE 65 (224)
T ss_dssp EECSSCBCHHHHHHHHCHHHHHHCCEEEE-----TTE--EEETTCCBCSCEEEEEECTTSH
T ss_pred EEecCCCCHHHHHHHHhhhcccceEEEEE-----CCE--EeccceEcCCCCeEEEEecCch
Confidence 679999999998 4678999998 999 8999999999999999999885
No 32
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=95.32 E-value=0.017 Score=51.26 Aligned_cols=47 Identities=32% Similarity=0.338 Sum_probs=36.8
Q ss_pred ceEEcCC----CCCHHHHHHHhC------------------C-cceEEEECCeec----CCCCcCCCCCEEEEe
Q 007593 550 EIMRLRS----GSTAADAAMKVG------------------L-EGKLVLVNGQLV----LPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~----GaTv~D~a~~lg------------------i-~~~~~~VNGr~~----~l~t~L~dGD~V~i~ 596 (597)
..+++|. ++|+.|++..|. + |..+++|||+.+ -++|+|+|||.|.|+
T Consensus 23 ~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 23 TSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp SEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred EEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEe
Confidence 3466773 469999998872 2 135699999998 589999999999885
No 33
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=95.31 E-value=0.012 Score=55.95 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=38.7
Q ss_pred ceEEcCCCCCHHHHHHHhCCc----------------ceEEEECCeecCC----CCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLE----------------GKLVLVNGQLVLP----NTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~----------------~~~~~VNGr~~~l----~t~L~dGD~V~i~ 596 (597)
..+++++ +|+.|+...|+.. ...+.|||+.++. +|+|++||.|+|+
T Consensus 16 ~~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 16 SQLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp SEEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred CeEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 3456775 9999999998632 3479999999998 9999999999986
No 34
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=94.29 E-value=0.056 Score=48.21 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=36.1
Q ss_pred EEcC---CCCCHHHHHHHhC-----C------------cceEEEECCee----cCCCCcCCCCCEEEEe
Q 007593 552 MRLR---SGSTAADAAMKVG-----L------------EGKLVLVNGQL----VLPNTELKDGDIVEVR 596 (597)
Q Consensus 552 ~~lp---~GaTv~D~a~~lg-----i------------~~~~~~VNGr~----~~l~t~L~dGD~V~i~ 596 (597)
+++| .++|+.|++..|. + +-.+++|||+. ..++|+|+|||.|.|+
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 6777 4479999999873 1 14679999996 4699999999999985
No 35
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.26 E-value=0.0061 Score=64.79 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=39.5
Q ss_pred ccccCCCCeeee-------cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCC
Q 007593 341 SSLKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 341 ~~Lp~Gat~Ldf-------iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
..+|.|+|+.|| +|++|++|.- ..||+ .+++++.|++||+|+|+|.+
T Consensus 343 ~~l~~G~t~~d~a~~iH~d~~~~f~~a~~---~~~~~--~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 343 FLMKKGSTPRDLAFKVHTDLGKGFLYAIN---ARTKR--RVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp EEEETTCCHHHHHHHHCHHHHHTEEEEEE---TTTCS--BCCTTCCCCTTEEEEEEEC-
T ss_pred EEeCCCCCHHHHHHHHhHHHHhhhhhhHH---hcCCE--EcCCCccccCCCEEEEEeCC
Confidence 468999999999 7899999941 22777 58999999999999999975
No 36
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=86.40 E-value=0.2 Score=43.59 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=34.0
Q ss_pred ccccCCCCeeee---cCC--ee-----eeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGS--NL-----LAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~--~~-----~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
..+|.|+|+.|. .|- .. .+.+ +.| ||+ .+++++.|+.||+|||+++=-
T Consensus 30 ~~v~~g~TV~daI~~~gi~~~~peIdl~~~~-V~V--ng~--~v~~d~~L~dGDRVEIyrpl~ 87 (97)
T 2hj1_A 30 FQVDEGITVQTAITQSGILSQFPEIDLSTNK-IGI--FSR--PIKLTDVLKEGDRIEIYRPLL 87 (97)
T ss_dssp EEEETTCBHHHHHHHHTHHHHCTTCCTTTSE-EEE--EEC--SCCTTCBCCTTCEEEECCCCC
T ss_pred EEcCCCCcHHHHHHHcCCCccCCcccccccE-EEE--cCE--ECCCCccCCCCCEEEEEeccc
Confidence 478999998775 232 11 0122 234 678 899999999999999998754
No 37
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=85.88 E-value=0.23 Score=48.38 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=40.0
Q ss_pred ccChhhHHH-hhhccccccccCCCCCcccccccccccccCcEEecccCCCCcccceeeccccchhhhhhhhhhhccccCC
Q 007593 395 IKCWEAYAR-LYKKASDEWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLPTFIQITHLTEEEESEYWAVVSAVFEG 473 (597)
Q Consensus 395 ~~~WL~fa~-t~k~~~~~~~~~~g~~~~~~~~~~~~~c~~~~~~~~~~~~r~~p~~~~l~~l~~~~~~~~~~~~~~~~~G 473 (597)
+.+.+++|+ .| ...++ .|+++++ | |+++|+..+| .+|
T Consensus 17 g~T~~dia~~i~--------~~l~~-----------~~vaakv---N--g~l~dL~~~l------------------~~~ 54 (224)
T 1tke_A 17 AVSPMDVALDIG--------PGLAK-----------ACIAGRV---N--GELVDACDLI------------------END 54 (224)
T ss_dssp CBCHHHHHHHHC--------HHHHH-----------HCCEEEE---T--TEEEETTCCB------------------CSC
T ss_pred CCCHHHHHHHHh--------hhccc-----------ceEEEEE---C--CEEeccceEc------------------CCC
Confidence 567899998 66 45556 8999999 9 9999999999 889
Q ss_pred ceEEEEecCC
Q 007593 474 KPVDSVVSRR 483 (597)
Q Consensus 474 ~~v~~~~~~~ 483 (597)
+.|+++|...
T Consensus 55 ~~ve~it~~~ 64 (224)
T 1tke_A 55 AQLSIITAKD 64 (224)
T ss_dssp EEEEEECTTS
T ss_pred CeEEEEecCc
Confidence 9999998864
No 38
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=83.48 E-value=0.39 Score=39.36 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=31.3
Q ss_pred cccCCCCeeee---cCC--eeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 342 SLKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 342 ~Lp~Gat~Ldf---iG~--~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
++|.|.|+-|. +|- ..+..- | ||+ +++.++.|+.||+|+|+.|-+
T Consensus 26 ~~~~~~Tv~dLl~~L~~~~~~v~Va---v--Ng~--~v~~~~~L~dGD~V~i~ppv~ 75 (77)
T 1rws_A 26 EWREGMKVRDILRAVGFNTESAIAK---V--NGK--VVLEDDEVKDGDFVEVIPVVS 75 (77)
T ss_dssp CCCSSCCHHHHHHTTTCSSCSSCEE---E--TTE--EECSSSCCCSSCCCBCSCCCC
T ss_pred ECCCCCcHHHHHHHhCCCCcCEEEE---E--CCE--ECCCCCCcCCCCEEEEEcccc
Confidence 56777777554 331 222222 3 788 799999999999999998743
No 39
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=82.71 E-value=0.55 Score=42.32 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEEECCeecCCCCcCCCCCEEEE
Q 007593 573 LVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 573 ~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
+++|||+.+.-.++|++||+|.|
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEE
T ss_pred CEEECCEEcCCcEECCCCCEEEE
Confidence 69999999998899999999976
No 40
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=80.79 E-value=0.76 Score=42.60 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=21.1
Q ss_pred EEEECCeecCCCCcCCCCCEEEE
Q 007593 573 LVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 573 ~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
+++|||+.+.-.++|++||+|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 59999999988889999999976
No 41
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=79.20 E-value=1 Score=35.57 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=30.8
Q ss_pred ccccCCCCeeee---cCC--eeeeeEEEEEccCCeEEeeec----cccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVAV----SFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~--~~~~AkV~~v~~ng~~~lv~l----~~~L~~gD~Vei~T~k~ 393 (597)
..+|.|.|+-|. .|. ..++ +.| ||+ .+|- ++.|+.||+|+|+++-+
T Consensus 10 ~~~~~~~tv~~ll~~l~~~~~~v~---vav--N~~--~v~~~~~~~~~L~~gD~v~i~~~V~ 64 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQLDQRQAGAA---LAI--NQQ--IVPREQWAQHIVQDGDQILLFQVIA 64 (66)
T ss_dssp ECCCTTCCHHHHHHHHTCCCSSEE---EEE--TTE--EECHHHHTTCCCCTTEEECEEESCC
T ss_pred EEcCCCCcHHHHHHHcCCCCCCEE---EEE--CCE--ECCchhcCCcCCCCCCEEEEEeecc
Confidence 367788887554 332 2222 223 788 6776 68999999999998643
No 42
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=79.14 E-value=1.2 Score=37.23 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.4
Q ss_pred eEEEECCeecCCCCcCCCCCEEEEe
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
..+.|||+.+.+++.|+.||.|.|.
T Consensus 26 G~V~VNg~~~~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 26 GAVWLNGSCAKASKEVKAGDTISLH 50 (92)
T ss_dssp TCCEETTEECCTTCBCCTTCEEEEC
T ss_pred CcEEECCEEcCCCCCcCCCCEEEEE
Confidence 3488999999999999999999885
No 43
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=78.83 E-value=0.89 Score=48.10 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHhCCc----ceE-------EEECCeecCCCCcCCCCCEEEEe
Q 007593 556 SGSTAADAAMKVGLE----GKL-------VLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 556 ~GaTv~D~a~~lgi~----~~~-------~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+++|+.|||+.++-+ ..= ++-+||.+-.+++|+|||+|+|+
T Consensus 323 ~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 323 DRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp TBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEE
Confidence 448999999999743 111 34577889999999999999986
No 44
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=78.12 E-value=1.3 Score=35.59 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=31.9
Q ss_pred ccccCCCCeeee---cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
.++|.|.|+-|. .|..- ...++.| ||. ++|-+..|+.||+|+++++-+
T Consensus 18 ~~~~~~~tv~~Ll~~l~~~~-~~v~vav--N~~--~v~~~~~L~~gD~V~ii~~V~ 68 (70)
T 1ryj_A 18 LESGAPRRIKDVLGELEIPI-ETVVVKK--NGQ--IVIDEEEIFDGDIIEVIRVIY 68 (70)
T ss_dssp EEESSCCBHHHHHHHTTCCT-TTEEEEE--TTE--ECCTTSBCCTTCEEEEEECTT
T ss_pred EECCCCCcHHHHHHHhCCCC-CCEEEEE--CCE--ECCCcccCCCCCEEEEEeccc
Confidence 467778777554 33211 1112223 788 899999999999999998743
No 45
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=78.09 E-value=1.3 Score=37.59 Aligned_cols=44 Identities=7% Similarity=0.039 Sum_probs=29.4
Q ss_pred cccCC-CCeeee---cCC--eeeeeEEEEEccCCeEEeeec----cccccCCceEEEeCCC
Q 007593 342 SLKMG-HPVIRV---EGS--NLLAAVIIRVEKGGRELLVAV----SFGLAASEVVADRRPS 392 (597)
Q Consensus 342 ~Lp~G-at~Ldf---iG~--~~~~AkV~~v~~ng~~~lv~l----~~~L~~gD~Vei~T~k 392 (597)
++|.| .|+.|. .|. ..++.- | ||+ ++|- ++.|+.||+|+|+++-
T Consensus 31 el~~~~~Tv~dLL~~L~~~~~~vaVa---v--Ng~--iV~~~~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 31 KWKKDTGTIQDLLASYQLENKIVIVE---R--NKE--IIGKERYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp CCSSSCCBHHHHHHHTTCTTSCCEEE---E--TTE--EECGGGTTTSBCCSSSEEEEEEEC
T ss_pred ECCCCCCcHHHHHHHhCCCCCCEEEE---E--CCE--ECChhhcCCcCCCCCCEEEEEccc
Confidence 56777 777554 332 222222 3 788 7886 5789999999999864
No 46
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=77.72 E-value=0.79 Score=37.63 Aligned_cols=47 Identities=13% Similarity=-0.033 Sum_probs=33.2
Q ss_pred ccccCCCCeeee---cCCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCC
Q 007593 341 SSLKMGHPVIRV---EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---iG~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
..+|.|+|+-|. .|-..... + |-.||+ .+|.+..++ ||.|+|++.-+
T Consensus 15 ~ev~~g~Tv~dLL~~Lgl~~~~V-v--V~vNG~--~v~~d~~l~-GD~VeIv~~V~ 64 (74)
T 2l32_A 15 VAVDDDGTYADLVRAVDLSPHEV-T--VLVDGR--PVPEDQSVE-VDRVKVLRLIK 64 (74)
T ss_dssp EECSTTCSHHHHHHTTCCCSSCC-C--EECCCC--CCCTTSSSC-CCCEEECSSCS
T ss_pred EEcCCCCcHHHHHHHcCCCcceE-E--EEECCE--ECCHHHCCC-CCEEEEEEeec
Confidence 689999998776 34222222 2 122889 899999885 99999998654
No 47
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=77.21 E-value=1.2 Score=42.52 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEECCeecCCCCcCCCCCEEEE
Q 007593 574 VLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 574 ~~VNGr~~~l~t~L~dGD~V~i 595 (597)
++|||+.+.-.++|+.||+|.|
T Consensus 142 t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 142 TYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp EEETTEECCSCEECCTTCEEEE
T ss_pred EEEcCEEccccEEcCCCCEEEE
Confidence 8999999999999999999975
No 48
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=76.44 E-value=2.9 Score=43.99 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=41.1
Q ss_pred EEEEccC---CceEEcCCCCCHHHHHHHhCCcc----eEEEE-----------------CC--eecCCCCcCCCCCEEEE
Q 007593 542 VIVCWPN---GEIMRLRSGSTAADAAMKVGLEG----KLVLV-----------------NG--QLVLPNTELKDGDIVEV 595 (597)
Q Consensus 542 ~~vf~p~---g~~~~lp~GaTv~D~a~~lgi~~----~~~~V-----------------NG--r~~~l~t~L~dGD~V~i 595 (597)
+.+||-. -+...++.|+|+.|+|..++-+. .=|.| -| |..--+++++|||+|++
T Consensus 280 i~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f 359 (363)
T 1jal_A 280 QTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHF 359 (363)
T ss_dssp EEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEE
T ss_pred EEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEE
Confidence 3366632 24677899999999999998651 11222 26 78889999999999998
Q ss_pred eC
Q 007593 596 RV 597 (597)
Q Consensus 596 ~~ 597 (597)
+.
T Consensus 360 ~f 361 (363)
T 1jal_A 360 RF 361 (363)
T ss_dssp ES
T ss_pred Ee
Confidence 73
No 49
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=72.57 E-value=2.8 Score=34.13 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=22.7
Q ss_pred CCeEEeeecc----ccccCCceEEEeCCCCCcc
Q 007593 368 GGRELLVAVS----FGLAASEVVADRRPSFQIK 396 (597)
Q Consensus 368 ng~~~lv~l~----~~L~~gD~Vei~T~k~p~~ 396 (597)
||. ++|-+ +.|+.||+|+|+++-+.+.
T Consensus 36 Ng~--iVpr~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 36 NYD--VVPRGKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp SSS--EECHHHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEccccCCc
Confidence 788 78875 7999999999999887544
No 50
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=72.31 E-value=1.5 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.3
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+.-.++|++||+|.|
T Consensus 80 ngt~vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 80 AETYVDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp SCEEETSCBCSSCEEECTTCEEEE
T ss_pred CCEEECCEEcCCCEECCCCCEEEE
Confidence 468999999997779999999976
No 51
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=71.59 E-value=3.2 Score=43.62 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=40.2
Q ss_pred EEEccC---CceEEcCCCCCHHHHHHHhCCc-------ceE--------------EEECC--eecCCCCcCCCCCEEEEe
Q 007593 543 IVCWPN---GEIMRLRSGSTAADAAMKVGLE-------GKL--------------VLVNG--QLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~---g~~~~lp~GaTv~D~a~~lgi~-------~~~--------------~~VNG--r~~~l~t~L~dGD~V~i~ 596 (597)
.+||-. -+...++.|+|+.|+|..++-+ ..+ |+=-| |..--+++++|||+|.++
T Consensus 286 ~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~ 365 (368)
T 2dby_A 286 TFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVL 365 (368)
T ss_dssp EEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEE
T ss_pred EEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEE
Confidence 356622 2567789999999999999753 111 22236 788899999999999987
Q ss_pred C
Q 007593 597 V 597 (597)
Q Consensus 597 ~ 597 (597)
.
T Consensus 366 f 366 (368)
T 2dby_A 366 F 366 (368)
T ss_dssp C
T ss_pred e
Confidence 3
No 52
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=71.31 E-value=3.2 Score=32.50 Aligned_cols=24 Identities=13% Similarity=-0.154 Sum_probs=20.3
Q ss_pred CCeEEeeecc----ccccCCceEEEeCCCC
Q 007593 368 GGRELLVAVS----FGLAASEVVADRRPSF 393 (597)
Q Consensus 368 ng~~~lv~l~----~~L~~gD~Vei~T~k~ 393 (597)
||+ .+|-+ +.|+.||+|+|+++-+
T Consensus 35 N~~--~v~~~~~~~~~L~dgD~v~i~~~V~ 62 (64)
T 2cu3_A 35 NEE--AFLGLEVPDRPLRDGDVVEVVALMQ 62 (64)
T ss_dssp TTE--EEEGGGCCCCCCCTTCEEEEEECCC
T ss_pred CCE--ECCccccCCcCCCCCCEEEEEeecc
Confidence 788 78866 8999999999998743
No 53
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=70.55 E-value=3.1 Score=37.67 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.7
Q ss_pred eEEEECCeecCCCCcCCCCCEEEEe
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
.-|.|||+.+.+++.|+.||+|.|.
T Consensus 34 G~V~VNG~~vk~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 34 GKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_dssp TCEEETTEECCTTCBCCTTCEEEEE
T ss_pred CcEEECCEEcCCCCEeCCCCEEEEE
Confidence 4589999999999999999999885
No 54
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=70.01 E-value=2 Score=35.59 Aligned_cols=47 Identities=6% Similarity=-0.032 Sum_probs=32.2
Q ss_pred ccc--CCCCeeee---cC---CeeeeeEEEEEccCCeEEeeecc----ccccCCceEEEeCCCCCc
Q 007593 342 SLK--MGHPVIRV---EG---SNLLAAVIIRVEKGGRELLVAVS----FGLAASEVVADRRPSFQI 395 (597)
Q Consensus 342 ~Lp--~Gat~Ldf---iG---~~~~~AkV~~v~~ng~~~lv~l~----~~L~~gD~Vei~T~k~p~ 395 (597)
++| .|.|+-++ .| ...++.-| ||. ++|=+ +.|+.||+|||+++-+.+
T Consensus 11 e~~~~~~~Tl~~LL~~l~~~~~~~vAVav-----Ng~--iVpr~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 11 TVDGAESLNVTELLSALKVAQAEYVTVEL-----NGE--VLEREAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp ECSSCSCEEHHHHHHHHTCSCTTTCCEEE-----TTE--ECCTTHHHHCEECSSBCEEECCCCCCS
T ss_pred EcCCCCCCcHHHHHHHcCCCCCCcEEEEE-----CCE--ECChHHcCcccCCCCCEEEEEeeecCC
Confidence 455 67777554 33 22333333 788 78886 889999999999987643
No 55
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=69.11 E-value=2.8 Score=37.75 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.0
Q ss_pred eEEEECCeecCCCC--cCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNT--ELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t--~L~dGD~V~i 595 (597)
-+.+|||+.+...+ +|++||+|.|
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CceEECCEECCCCceeECCCCCEEEE
Confidence 57999999998875 6999999976
No 56
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=66.56 E-value=21 Score=27.48 Aligned_cols=54 Identities=13% Similarity=0.256 Sum_probs=38.6
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCcC-----CCCCEEEEe
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTEL-----KDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~L-----~dGD~V~i~ 596 (597)
++|=+++|+. ++++...|+.++-.++ |++ .++. .+|+...-+..| ++|++|.+.
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 3466777764 6779999999987775 776 3444 488877655554 589998774
No 57
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=66.38 E-value=6.2 Score=42.04 Aligned_cols=47 Identities=28% Similarity=0.304 Sum_probs=37.3
Q ss_pred ceEEcCCCCCHHHHHHHhCCcc-----eE----------------EEECC--eecCCCCcCCCCCEEEEe
Q 007593 550 EIMRLRSGSTAADAAMKVGLEG-----KL----------------VLVNG--QLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 550 ~~~~lp~GaTv~D~a~~lgi~~-----~~----------------~~VNG--r~~~l~t~L~dGD~V~i~ 596 (597)
+...++.|+|+.|+|..++-+. .. |+=.| |..--+++++|||+|+++
T Consensus 317 rawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~ 386 (396)
T 2ohf_A 317 RAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFK 386 (396)
T ss_dssp EEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEE
T ss_pred eeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEE
Confidence 5677899999999999998651 11 12234 899999999999999987
No 58
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=65.20 E-value=2 Score=36.88 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+....+|++||++.|
T Consensus 69 nGt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 69 NGVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp SCCEETTEECSSEEECCTTCCEEE
T ss_pred CCeEECCEECCCCeECCCCCEEEE
Confidence 367999999988789999999876
No 59
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=63.05 E-value=26 Score=26.94 Aligned_cols=53 Identities=13% Similarity=0.297 Sum_probs=37.5
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
+|=+++|+. ++++..+|+.|+-.++ |++ .++. .+|+...-+.. +++|++|.+.
T Consensus 4 ~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 4 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 455667764 6779999999987775 776 3444 48887654544 4699998875
No 60
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=61.67 E-value=6 Score=31.56 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=21.2
Q ss_pred CCeEEeeeccccccCCceEEEeCCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPSF 393 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k~ 393 (597)
||+ .++.++.|+.||+|+|+.|-+
T Consensus 52 Ng~--~v~~~~~L~~gD~V~i~ppv~ 75 (77)
T 2q5w_D 52 NEE--FVQKSDFIQPNDTVALIPPVS 75 (77)
T ss_dssp TTE--EECTTSEECTTCEEEEECSCC
T ss_pred CCE--ECCCCCCcCCCCEEEEECCCC
Confidence 788 799999999999999998743
No 61
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=61.28 E-value=2.7 Score=30.29 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=35.4
Q ss_pred CceEEcCCCCCHHHHHHHhCCcc-eEEEECCeecCCCCcCCCCCEEEEe
Q 007593 549 GEIMRLRSGSTAADAAMKVGLEG-KLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 549 g~~~~lp~GaTv~D~a~~lgi~~-~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
...+.+.+|.|+.++|.+.|+.+ .+...|+ -...|+.|+++.|-
T Consensus 2 ~~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~----~~~~l~~G~~l~ip 46 (48)
T 1e0g_A 2 SITYRVRKGDSLSSIAKRHGVNIKDVMRWNS----DTANLQPGDKLTLF 46 (48)
T ss_dssp CCEEEECTTCCHHHHHHHHTCCHHHHHHHCS----CGGGCCTTEEEECC
T ss_pred CEEEEEcCCCcHHHHHHHHCcCHHHHHHhCC----CCCcCCcCCEEEEe
Confidence 35678899999999999999973 5667888 35679999988763
No 62
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=60.49 E-value=31 Score=28.12 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=41.3
Q ss_pred CCceEEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 538 PGEVVIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 538 ~~ev~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
.+.+.++.+.+|+. ++++...|+.|+-..+ |++ -++. .+|+...-+.. +++|++|.+.
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FKGKVLVETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ETTEECCTTCBTTTTTCCTTEEEEEE
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCeECCCcCCHHHCCCCCCCEEEEE
Confidence 35666677778877 5669999999987776 776 3554 58887644444 5589988765
No 63
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=60.44 E-value=38 Score=26.69 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=39.1
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCcC-----CCCCEEEEeC
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTEL-----KDGDIVEVRV 597 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~L-----~dGD~V~i~~ 597 (597)
++|-+++|+. ++++...||.|+-.++ |++ .++. .+|+...-+..| ++|++|.+.+
T Consensus 6 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~-~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp EEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE-ECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 3466677765 4568999999987775 776 3555 488877655554 6899998753
No 64
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=60.26 E-value=11 Score=31.39 Aligned_cols=35 Identities=9% Similarity=0.052 Sum_probs=27.2
Q ss_pred eEEEEEccCCeEEeeeccccccCCceEEEeCCCCC
Q 007593 360 AVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 394 (597)
Q Consensus 360 AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~p 394 (597)
|.|.+.+.++....+.++..+.-||.||+++|.++
T Consensus 10 G~V~~~~~~~g~~~ie~rN~f~~GD~iEi~~P~g~ 44 (89)
T 4he6_A 10 GLVLGYDPETGIATVQQRNHFRPGDEVEFFGPEIE 44 (89)
T ss_dssp EEEEEEETTTTEEEEEESSCBCTTCEEEEESTTSC
T ss_pred EEEEEEeCCCCEEEEEEcCCcCCCCEEEEEcCCCC
Confidence 56666655533457889999999999999999884
No 65
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=59.66 E-value=3.2 Score=35.06 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.1
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+. ..+|++||++.|
T Consensus 65 nGt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 65 NGTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCEEECCEECc-eEECCCCCEEEE
Confidence 36899999998 689999999976
No 66
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=58.76 E-value=3.8 Score=37.49 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred eEEEECCeecCC-CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP-NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l-~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 87 NGT~VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 87 NGTFINGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp SCEEETTEECCSSCEEECSSEEEEE
T ss_pred CCeEECCEEcCCCceECCCCCEEEE
Confidence 468999999987 589999999976
No 67
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=58.51 E-value=3.3 Score=37.20 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.4
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+.- .+|++||+|.|
T Consensus 82 NGT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 82 NGLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp SCEEETTEEESE-EECCTTCEEEC
T ss_pred CceEECCEEeEe-EECCCCCEEEE
Confidence 578999999986 99999999975
No 68
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=55.99 E-value=4.5 Score=36.94 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.8
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 103 NGT~VNg~~i~~~~~~~L~~GD~I~l 128 (149)
T 1gxc_A 103 NGTFVNTELVGKGKRRPLNNNSEIAL 128 (149)
T ss_dssp SCEEETTEECCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEECCCCCEEEE
Confidence 468999999985 678999999976
No 69
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=55.62 E-value=3.8 Score=35.48 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.5
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 68 NGt~vng~~l~~~~~~~L~~GD~i~~ 93 (116)
T 1lgp_A 68 SGTVINKLKVVKKQTCPLQTGDVIYL 93 (116)
T ss_dssp SCCCCCCCCCCCSSCCCCCTTCEEEE
T ss_pred CCcEECCEEcCCCCcEECCCCCEEEE
Confidence 357999998886 589999999986
No 70
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.54 E-value=29 Score=27.15 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=36.7
Q ss_pred EEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCcC-----CCCCEEEEe
Q 007593 544 VCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTEL-----KDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~L-----~dGD~V~i~ 596 (597)
|-+++|+. ++++...|+.++-.++ |++ .++. .+|+...-+..| ++|++|.+.
T Consensus 12 vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~gk~L~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 12 VKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL-FKGKALADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp EEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE-ETTEECCTTSBGGGGTCCSSBCCEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-ECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 44566764 6779999999987775 776 3554 488876555444 589988765
No 71
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=54.50 E-value=5.3 Score=32.52 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHhCCc-----------ceEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 556 SGSTAADAAMKVGLE-----------GKLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 556 ~GaTv~D~a~~lgi~-----------~~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
++.++-.+....|+- -..+.|||+.+ .+.+.++.||+|.|.
T Consensus 19 ~~~RLdk~L~~~g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~ 71 (79)
T 1p9k_A 19 PHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp SCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET
T ss_pred CCchHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEEC
Confidence 446788888887851 35589999987 889999999998873
No 72
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=54.23 E-value=6.5 Score=35.35 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.1
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 75 NGT~vNg~~l~~~~~~~L~~GD~I~l 100 (138)
T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQL 100 (138)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCcEECCCCCEEEE
Confidence 468999999988 589999999986
No 73
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=54.00 E-value=5 Score=34.86 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+. ..+|++||+|.|
T Consensus 73 nGt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 73 NGTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp SCEEETTEECS-EEEECTTCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 46899999998 689999999976
No 74
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=53.51 E-value=19 Score=29.69 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.7
Q ss_pred EEc-cCC-ceEEcCCCCCHHHHHHHhCCc
Q 007593 544 VCW-PNG-EIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 544 vf~-p~g-~~~~lp~GaTv~D~a~~lgi~ 570 (597)
.|. ++| ..+++++|.|+.|+|.+-|++
T Consensus 5 ~~~~~~g~~~~~~~~g~tlL~a~~~~gi~ 33 (95)
T 1frr_A 5 VLKTPSGEFTLDVPEGTTILDAAEEAGYD 33 (95)
T ss_dssp EEEETTEEEEEEECTTCCHHHHHHHTTCC
T ss_pred EEEeCCCcEEEEeCCCCcHHHHHHHcCCC
Confidence 454 998 899999999999999999874
No 75
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=52.25 E-value=4.1 Score=35.49 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.4
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 76 nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 76 NGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp SCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEEcCCCCEEEE
Confidence 467999999887 578999999976
No 76
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=52.16 E-value=38 Score=26.72 Aligned_cols=54 Identities=13% Similarity=0.294 Sum_probs=37.7
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCcc---eEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLEG---KLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~~---~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
++|-+++|+. +++++.+||.|+-.++ |+++ ++.+ +|+...-+.. +++|++|.+.
T Consensus 6 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-~g~~L~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 6 IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp EEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TBEECCTTCBTTTTTCCTTCEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CCeECCCCCCHHHCCCCCCCEEEEE
Confidence 3466677765 4678999999997775 7763 4544 8877654444 6679998875
No 77
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=51.82 E-value=11 Score=39.94 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=38.3
Q ss_pred EEEEccC---CceEEcCCCCCHHHHHHHhCCc-----ceEEEE----------------CC--eecCCCCcCCCCCEEEE
Q 007593 542 VIVCWPN---GEIMRLRSGSTAADAAMKVGLE-----GKLVLV----------------NG--QLVLPNTELKDGDIVEV 595 (597)
Q Consensus 542 ~~vf~p~---g~~~~lp~GaTv~D~a~~lgi~-----~~~~~V----------------NG--r~~~l~t~L~dGD~V~i 595 (597)
+.+||-. -+...++.|+|+-++|..++-+ +..--| .| |+.--+++++|||++.+
T Consensus 308 ~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 308 INYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHW 387 (392)
T ss_dssp EEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEEC
T ss_pred EEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEE
Confidence 3366632 2677899999999999999754 222222 12 33566799999999998
Q ss_pred e
Q 007593 596 R 596 (597)
Q Consensus 596 ~ 596 (597)
+
T Consensus 388 ~ 388 (392)
T 1ni3_A 388 K 388 (392)
T ss_dssp C
T ss_pred E
Confidence 6
No 78
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=51.68 E-value=4.6 Score=35.73 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=20.7
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+.-...|++||+|.|
T Consensus 75 nGt~vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 75 NPTQVNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp SCCEETTEECSSCEECCTTEEEEC
T ss_pred CCEEECCEECCCcEEcCCCCEEEE
Confidence 457999999986689999999875
No 79
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=51.57 E-value=22 Score=29.45 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=29.5
Q ss_pred ccCC-ceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeecC
Q 007593 546 WPNG-EIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLVL 582 (597)
Q Consensus 546 ~p~g-~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~~ 582 (597)
.++| ..+++++|.|+.|++.+-|++ |++-.++|..-.
T Consensus 7 ~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~ 56 (94)
T 1awd_A 7 TPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQ 56 (94)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEC
T ss_pred eCCCcEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCc
Confidence 4787 889999999999999998874 555566886543
No 80
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=51.55 E-value=45 Score=27.56 Aligned_cols=54 Identities=13% Similarity=0.315 Sum_probs=38.2
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
++|=+++|+. ++++...|+.|+-.++ |++ .++. .+|+...-+.. +++|++|.+.
T Consensus 3 I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~~Gk~L~D~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-ETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 3466777764 6779999999987775 776 3454 48987655544 4689998764
No 81
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=50.83 E-value=6.5 Score=34.77 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.7
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||++.|
T Consensus 79 NGT~vNg~~l~~~~~~~L~~Gd~I~l 104 (127)
T 1g6g_A 79 NGTWLNGQKVEKNSNQLLSQGDEITV 104 (127)
T ss_dssp SCCEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCeEEcCCCCEEEE
Confidence 467999999987 588999999976
No 82
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=49.56 E-value=4.2 Score=37.66 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.9
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 83 NGT~VNg~ri~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 83 NVSYLNNNRMIQGTKFLLQDGDEIKI 108 (158)
T ss_dssp TCCEETTEECCSSEEEECCSSCCEES
T ss_pred CCeEECCEEcCCCceEEcCCCCEEEE
Confidence 457999999988 589999999987
No 83
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=49.29 E-value=11 Score=36.66 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=29.7
Q ss_pred CCHHHHHHHhCCc-----------ceEEEECCeecC-CCCcCCCCCEEEEe
Q 007593 558 STAADAAMKVGLE-----------GKLVLVNGQLVL-PNTELKDGDIVEVR 596 (597)
Q Consensus 558 aTv~D~a~~lgi~-----------~~~~~VNGr~~~-l~t~L~dGD~V~i~ 596 (597)
..+-.++++.|.. -.-+.|||+.+. +++.++.||+|+|.
T Consensus 99 ~RLD~~L~~~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~ 149 (209)
T 2vqe_D 99 SRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVA 149 (209)
T ss_dssp TBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEEC
T ss_pred HHHHHHHHHhcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEc
Confidence 4566666666531 345899999995 99999999999985
No 84
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=49.21 E-value=12 Score=34.88 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=22.2
Q ss_pred eEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 572 KLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 572 ~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
..+.|||+.+ .+++.++.||.|.|.
T Consensus 76 G~V~VNG~~v~~ps~~V~~gD~I~V~ 101 (159)
T 1c05_A 76 GHILVDGSRVNIPSYRVKPGQTIAVR 101 (159)
T ss_dssp TCEEETTEECCCSSCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcEeCCCCEEEEe
Confidence 4589999999 699999999999885
No 85
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=49.12 E-value=61 Score=26.34 Aligned_cols=58 Identities=12% Similarity=0.288 Sum_probs=38.9
Q ss_pred CCceEEEEccCCceE--EcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 538 PGEVVIVCWPNGEIM--RLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 538 ~~ev~~vf~p~g~~~--~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
.+=.++|-+.+|+.+ +++...|+.|+-.++ |++ .++. .+|+...-+.. +++|++|.+.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~gi~~g~~i~l~ 79 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLV 79 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTSBSGGGTCCTTCEEEEE
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 343344667777764 569999999987775 787 3554 48887654444 5689998775
No 86
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=48.52 E-value=62 Score=25.20 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=37.3
Q ss_pred EEEccCCce---EE-cCCCCCHHHHHHHh----CCcc---eEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 543 IVCWPNGEI---MR-LRSGSTAADAAMKV----GLEG---KLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~---~~-lp~GaTv~D~a~~l----gi~~---~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
+|=+.+|+. ++ ++...|+.++-.++ |+++ ++. .+|+...-+. -+++|++|.+.
T Consensus 6 ~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~-~~g~~L~d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 6 QVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YRGKQMEDGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp EEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTCBTTTTTCCTTCEEEEE
T ss_pred EEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE-ECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 455667754 66 99999999987776 7863 444 4888764443 45589998875
No 87
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=48.00 E-value=5.5 Score=37.09 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred eEEEECCeecCCC--CcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPN--TELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~--t~L~dGD~V~i 595 (597)
-+.+|||+.++.. .+|++||+|.|
T Consensus 117 NGT~VNg~ri~~~~~~~L~~GD~I~~ 142 (158)
T 3els_A 117 NGTCLNNVVIPGARYIELRSGDVLTL 142 (158)
T ss_dssp SCCEETTEECCTTCCEECCTTEEEES
T ss_pred CccEECCEEcCCCceEEcCCCCEEEE
Confidence 4679999999985 68999999875
No 88
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=47.93 E-value=6.5 Score=35.69 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.9
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 83 NGT~vNg~~i~~~~~~~L~~GD~I~i 108 (145)
T 2csw_A 83 NGVWLNRARLEPLRVYSIHQGDYIQL 108 (145)
T ss_dssp SCEEESSCBCCBTCCEECCSSCCEEE
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 468999999987 589999999986
No 89
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=47.00 E-value=54 Score=25.68 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=38.5
Q ss_pred EEEEccCCceE--EcCCCCCHHHHHHHh----CCcc---eEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 542 VIVCWPNGEIM--RLRSGSTAADAAMKV----GLEG---KLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~~--~lp~GaTv~D~a~~l----gi~~---~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
++|=+++|+.+ ++++..||.++=.++ |+++ ++. .+|+...-+.. +++|++|.+.
T Consensus 7 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~G~~L~d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 7 ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp EEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE-ECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 45777788764 678999999988776 8873 444 48877655544 5569998875
No 90
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=46.67 E-value=6 Score=36.14 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.0
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+. ...|++||+|.|
T Consensus 108 NGT~VNg~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 108 NGTYVNREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp SCCEETTEECS-EEECCTTEEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 45799999998 689999999976
No 91
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=45.32 E-value=5.3 Score=38.03 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.6
Q ss_pred ceEEEECCeecCC--CCcCCCCCEEEE
Q 007593 571 GKLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 571 ~~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
--+++|||+.+.. ..+|++||+|.|
T Consensus 106 tNGT~VNg~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 106 TNVSYLNNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp SSCCEETTEECCSSEEEECCTTBCCEE
T ss_pred cCCeEECCEEcCCCcceEcCCCCEEEE
Confidence 3568999999988 589999999987
No 92
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=45.19 E-value=9 Score=35.56 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.0
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 107 NGT~vNg~~i~~~~~~~L~~GD~I~i 132 (164)
T 1g3g_A 107 NGTWLNGQKVEKNSNQLLSQGDEITV 132 (164)
T ss_dssp SCEEETTEEECTTEEEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCceEcCCCCEEEE
Confidence 568999999988 489999999976
No 93
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=45.12 E-value=6.8 Score=35.28 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.4
Q ss_pred eEEEECCeecCC----------CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP----------NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l----------~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 76 NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 76 NGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 457999999984 789999999875
No 94
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=44.93 E-value=17 Score=29.04 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.4
Q ss_pred CCeEEeeeccccccCCceEEEeCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
||+ .++.++.|+.||+|+|+.|-
T Consensus 56 N~~--~v~~~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 56 NQT--LVSFDHPLTDGDEVAFFPPV 78 (81)
T ss_dssp TTE--ECCTTCBCCTTCEEEEECCC
T ss_pred CCE--ECCCCCCCCCCCEEEEeCCC
Confidence 788 78999999999999999764
No 95
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=44.84 E-value=7.7 Score=37.91 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEECCeecCCCC--cCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNT--ELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t--~L~dGD~V~i 595 (597)
-+.+|||+.+...+ +|++||+|.|
T Consensus 164 NGTfVNG~rI~~~~~~~L~~GD~I~f 189 (205)
T 3elv_A 164 NGTCLNNVVIPGARYIELRSGDVLTL 189 (205)
T ss_dssp SCCEETTEECCBTSCEECCTTCEEES
T ss_pred CCCeECCEECCCCceeECCCCCEEEE
Confidence 46899999998874 7999999975
No 96
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=43.81 E-value=19 Score=30.42 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.9
Q ss_pred EE-ccCC--ceEEcCCCCCHHHHHHHhCCc
Q 007593 544 VC-WPNG--EIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 544 vf-~p~g--~~~~lp~GaTv~D~a~~lgi~ 570 (597)
.| .++| ..+..++|.|+.|+|.+-|++
T Consensus 4 ~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 4 VYVSHDGTRRELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEECTTSCEEEEECCTTCBHHHHHHHTTCT
T ss_pred EEEeCCCCEEEEEECCCCcHHHHHHHcCCC
Confidence 45 7999 899999999999999998765
No 97
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=43.60 E-value=37 Score=26.70 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=37.7
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
+|-+.+|+. +.+.+..|+.++-.++ |++ .++. -||+...-+.. +++||+|.+.
T Consensus 7 ~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~G~~L~d~~tl~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 7 KVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELGMEEEDVIEVY 73 (79)
T ss_dssp EEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHHTCCTTEEEEEE
T ss_pred EEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECCEEeCCCCCHHHcCCCCCCEEEEE
Confidence 355666665 5668899999987775 787 3444 38888776655 4599999875
No 98
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=43.25 E-value=8.9 Score=35.85 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+. ...|++||+|.|
T Consensus 117 NGT~VNg~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 117 NGTYVNREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp SCEEETTBCCS-EEECCSSCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 46899999998 689999999976
No 99
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=42.49 E-value=26 Score=32.66 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=31.3
Q ss_pred EEEEccCCceEEc--CCCCCHHHHHHH-hCCc-ce-----------EEEECCeecC
Q 007593 542 VIVCWPNGEIMRL--RSGSTAADAAMK-VGLE-GK-----------LVLVNGQLVL 582 (597)
Q Consensus 542 ~~vf~p~g~~~~l--p~GaTv~D~a~~-lgi~-~~-----------~~~VNGr~~~ 582 (597)
.+-|+=||+-+++ ++|.|+.|+++. +|+. .+ .+.|||+.+.
T Consensus 11 ~i~~~ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~vdG~~v~ 66 (168)
T 1t3q_A 11 RISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMR 66 (168)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEETTEEEE
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEECCCEee
Confidence 3567778887774 999999999999 5874 21 3788998764
No 100
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=42.38 E-value=14 Score=31.77 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=27.6
Q ss_pred ccCCceEEcCCCCCHHHHHHHhCCc-------------ceEEEECCe
Q 007593 546 WPNGEIMRLRSGSTAADAAMKVGLE-------------GKLVLVNGQ 579 (597)
Q Consensus 546 ~p~g~~~~lp~GaTv~D~a~~lgi~-------------~~~~~VNGr 579 (597)
-|+|..+++++|.|+.|+|.+-|++ |++-.+.|.
T Consensus 13 ~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~ 59 (113)
T 3ah7_A 13 CPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGF 59 (113)
T ss_dssp BTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESG
T ss_pred CCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCc
Confidence 3477999999999999999998874 455666785
No 101
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=42.34 E-value=86 Score=24.83 Aligned_cols=55 Identities=13% Similarity=0.301 Sum_probs=38.3
Q ss_pred EEEEccCCceE--EcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEeC
Q 007593 542 VIVCWPNGEIM--RLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVRV 597 (597)
Q Consensus 542 ~~vf~p~g~~~--~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~~ 597 (597)
++|=+.+|+.+ +++...||.++-.++ |++ .++.+ +|+...-+. -+++|++|.+.+
T Consensus 15 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 15 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp EEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 34556677764 568999999987776 776 35554 888765443 456799998753
No 102
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=42.22 E-value=19 Score=30.49 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=24.0
Q ss_pred EE-ccCC--ceEEcCCCCCHHHHHHHhCCc
Q 007593 544 VC-WPNG--EIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 544 vf-~p~g--~~~~lp~GaTv~D~a~~lgi~ 570 (597)
.| .++| ..+..++|.|+.|+|.+-|++
T Consensus 4 ~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~ 33 (106)
T 1uwm_A 4 IFIEHNGTRHEVEAKPGLTVMEAARDNGVP 33 (106)
T ss_dssp EEECTTCCEEEEECCTTSBHHHHHHTTTCT
T ss_pred EEEeCCCCEEEEEECCCCcHHHHHHHcCCC
Confidence 45 7999 899999999999999998765
No 103
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=42.16 E-value=1e+02 Score=25.01 Aligned_cols=54 Identities=13% Similarity=0.275 Sum_probs=37.1
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCC-----CcCCCCCEEEEeC
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPN-----TELKDGDIVEVRV 597 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~-----t~L~dGD~V~i~~ 597 (597)
+|=+.+|+. ++++...||.++=.++ |++ -++++ +|+...-+ .-+++|++|.+.+
T Consensus 4 ~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 4 KVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp EEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE-CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 355566665 4668999999987775 787 35554 88876544 4456799988753
No 104
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=41.12 E-value=22 Score=29.09 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.6
Q ss_pred CCeEEeeeccccccCCceEEEeCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
||+ .++.++.|+.||+|.++.|-
T Consensus 64 N~~--~v~~~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 64 NGE--AAALGEATAAGDELALFPPV 86 (89)
T ss_dssp TTE--ECCTTSBCCTTCEEEEECCC
T ss_pred CCE--ECCCCcccCCCCEEEEECCC
Confidence 788 78999999999999999774
No 105
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=40.97 E-value=9.3 Score=35.69 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.0
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+. ..+|++||+|.|
T Consensus 127 NGT~VNG~~i~-~~~L~~GD~I~l 149 (157)
T 3oun_A 127 NGTTVNNAPVQ-EWQLADGDVIRL 149 (157)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCeEECCEECc-eEECCCCCEEEE
Confidence 36899999997 689999999976
No 106
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=40.96 E-value=31 Score=28.74 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=30.1
Q ss_pred EEc-cCC-ceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeecC
Q 007593 544 VCW-PNG-EIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLVL 582 (597)
Q Consensus 544 vf~-p~g-~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~~ 582 (597)
.|. ++| ..+++++|.|+.|++.+-|++ |++-.++|..-.
T Consensus 6 ~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~ 58 (97)
T 1a70_A 6 TLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQ 58 (97)
T ss_dssp EEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEEC
T ss_pred EEEeCCceEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCc
Confidence 444 777 789999999999999999874 555566886543
No 107
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=40.95 E-value=21 Score=30.09 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred CCeEEeeeccccccCCceEEEeCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
||+ .++.++.|+.||+|+|+.|-
T Consensus 73 Ng~--~v~~~~~L~dGDeV~i~ppv 95 (98)
T 1vjk_A 73 NGR--YVSWDEELKDGDVVGVFPPV 95 (98)
T ss_dssp TTB--CCCTTCBCCTTCEEEEESCC
T ss_pred CCE--ECCCCCCCCCCCEEEEECCC
Confidence 788 78999999999999999764
No 108
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=40.76 E-value=45 Score=27.77 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=38.1
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
+|-+.+|+. +.+....|+.++-.++ |++ ..+.| +|+...-+.. +++||+|.+.
T Consensus 25 ~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~i~~g~~I~l~ 91 (97)
T 1wyw_B 25 KVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELGMEEEDVIEVY 91 (97)
T ss_dssp EEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHTCCTTCEEEEE
T ss_pred EEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCCCCCCCEEEEE
Confidence 355677774 5678899999987776 787 35544 8887766544 5599999875
No 109
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=40.54 E-value=28 Score=29.20 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.9
Q ss_pred EEEEc-cCC--ceEEcCCCCCHHHHHHHhCCc
Q 007593 542 VIVCW-PNG--EIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 542 ~~vf~-p~g--~~~~lp~GaTv~D~a~~lgi~ 570 (597)
.+.|. ++| ..+..++|.|+.|++++-|++
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~ 36 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHANNID 36 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHHTTCC
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHcCCC
Confidence 34566 999 889999999999999998874
No 110
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=38.97 E-value=11 Score=32.81 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEECCeecCCC--CcCCCCCEEEEe
Q 007593 574 VLVNGQLVLPN--TELKDGDIVEVR 596 (597)
Q Consensus 574 ~~VNGr~~~l~--t~L~dGD~V~i~ 596 (597)
++|||+...-+ .+|++||+++|+
T Consensus 66 ~~vng~~l~k~~~~~L~~GD~l~Ll 90 (102)
T 3kt9_A 66 TSIDSVVIGKDQEVKLQPGQVLHMV 90 (102)
T ss_dssp CEETTEECCBTCEEEECTTCCEEEE
T ss_pred CeECCEEcCCCCeEEeCCCCEEEEc
Confidence 67799988877 899999999986
No 111
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=38.72 E-value=38 Score=31.68 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=31.6
Q ss_pred EEEEccCCceEEc--CCCCCHHHHHHH-hCCc----------c--eEEEECCeecC
Q 007593 542 VIVCWPNGEIMRL--RSGSTAADAAMK-VGLE----------G--KLVLVNGQLVL 582 (597)
Q Consensus 542 ~~vf~p~g~~~~l--p~GaTv~D~a~~-lgi~----------~--~~~~VNGr~~~ 582 (597)
.+-|+-||+-+++ ++|.|+.|+++. +|+. | =.|.|||+.+.
T Consensus 5 ~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG~~v~ 60 (163)
T 1ffv_A 5 IITVNVNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVK 60 (163)
T ss_dssp EEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEE
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECCcEec
Confidence 4578889998854 799999999998 6762 1 14889998764
No 112
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=37.69 E-value=18 Score=30.97 Aligned_cols=24 Identities=42% Similarity=0.793 Sum_probs=21.5
Q ss_pred cCCceEEcCCCCCHHHHHHHhCCc
Q 007593 547 PNGEIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 547 p~g~~~~lp~GaTv~D~a~~lgi~ 570 (597)
|+|..+++++|.|+.|+|.+-|++
T Consensus 14 ~~~~~~~~~~g~tlL~a~~~~gi~ 37 (111)
T 1i7h_A 14 PDGAVLEANSGETILDAALRNGIE 37 (111)
T ss_dssp TTCEEEECCTTCBHHHHHHHTTCC
T ss_pred CCCeEEEeCCCCcHHHHHHHcCCC
Confidence 478999999999999999998874
No 113
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=37.65 E-value=23 Score=29.89 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=24.3
Q ss_pred EEE-ccCC--ceEEcCCCCCHHHHHHHhCCc
Q 007593 543 IVC-WPNG--EIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 543 ~vf-~p~g--~~~~lp~GaTv~D~a~~lgi~ 570 (597)
|.| .++| ..++.++|.|+.|+|.+-|++
T Consensus 3 V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~ 33 (105)
T 1b9r_A 3 VVFIDEQSGEYAVDAQDGQSLMEVATQNGVP 33 (105)
T ss_dssp EEECCTTTSCEEEECCTTCCTTHHHHHHTCC
T ss_pred EEEEeCCCCEEEEEECCCChHHHHHHHcCCC
Confidence 356 7999 899999999999999998764
No 114
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.53 E-value=61 Score=25.80 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=37.4
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCcC-----CCCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTEL-----KDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~L-----~dGD~V~i~ 596 (597)
+|-+.+|+. ++++...|+.|+-.++ |++ .++. .+|+...-+..| ++|++|.+.
T Consensus 11 ~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~Gk~L~d~~tL~~~~i~~g~~i~l~ 77 (87)
T 1wh3_A 11 FVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE-FQGQVLQDWLGLGIYGIQDSDTLILS 77 (87)
T ss_dssp EEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE-ETTEECCSSSBHHHHTCCTTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE-ECCEEccCCCCHHHCCCCCCCEEEEE
Confidence 455667765 5679999999987776 776 3444 589877555444 589988764
No 115
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=37.36 E-value=94 Score=25.20 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=37.5
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
+|=+.+|+. ++++...||.|+-.++ |++ .++. .+|+...-+. -+++|++|.+.
T Consensus 5 ~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~~G~~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 5 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp EEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 455667765 4678999999987775 776 3555 4888765543 35679998875
No 116
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=37.06 E-value=1.3e+02 Score=25.50 Aligned_cols=54 Identities=28% Similarity=0.301 Sum_probs=37.6
Q ss_pred EEEccCCceE--EcCCCCCHHHHHHHh----CCc---ceEEEECCeecCC-----CCcCCCCCEEEEeC
Q 007593 543 IVCWPNGEIM--RLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLP-----NTELKDGDIVEVRV 597 (597)
Q Consensus 543 ~vf~p~g~~~--~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l-----~t~L~dGD~V~i~~ 597 (597)
+|=+.+|+.+ +++...||.|+=..+ |++ .++++ +|+...= +.-+++|++|.+.+
T Consensus 5 ~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 5 TFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY-SGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp EEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE-TTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 3556667655 568899999988776 776 35554 7876532 45578899998753
No 117
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=36.58 E-value=1.4e+02 Score=22.78 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=35.4
Q ss_pred EEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCcC-----CCCCEEEEe
Q 007593 544 VCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTEL-----KDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~L-----~dGD~V~i~ 596 (597)
|-+ +|+. ++++...|+.|+-..+ |++ .++ ..+|+...-+..| ++|++|.+.
T Consensus 9 vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL-~~~gk~L~d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 9 IKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRL-IYSGKILKDDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEE-EECCeEcCCCCCHHHcCCCCCCEEEEE
Confidence 444 6665 5679999999987775 776 344 4588876544444 589998764
No 118
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=36.37 E-value=1.2e+02 Score=24.52 Aligned_cols=54 Identities=13% Similarity=0.301 Sum_probs=37.7
Q ss_pred EEEccCCceE--EcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCC-----CcCCCCCEEEEeC
Q 007593 543 IVCWPNGEIM--RLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPN-----TELKDGDIVEVRV 597 (597)
Q Consensus 543 ~vf~p~g~~~--~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~-----t~L~dGD~V~i~~ 597 (597)
+|=+.+|+.+ +++...||.|+=.++ |++ .++.+ +|+...-+ .-+++|++|.+.+
T Consensus 21 ~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 21 FVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp EEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred EEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE-CCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 3555677764 568999999987776 786 35554 88776544 3457899998763
No 119
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=36.07 E-value=13 Score=33.31 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.9
Q ss_pred eEEEECCeec--C--CCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLV--L--PNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~--~--l~t~L~dGD~V~i 595 (597)
-+++|||+.+ . -..+|++||+|.|
T Consensus 89 NGT~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 89 NGTQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp SCEEETTTTEEECTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcccCCCCEEECCCCCEEEE
Confidence 3689999974 2 3467999999976
No 120
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.99 E-value=21 Score=34.63 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=21.7
Q ss_pred eEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 572 KLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 572 ~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
.-+.|||+.| .+++.++.||+|+|.
T Consensus 114 G~V~VNG~~V~~pS~~V~~gD~I~V~ 139 (201)
T 3bbn_D 114 RHILVNGRIVDIPSYRCKPQDTIMAR 139 (201)
T ss_dssp TCEEETTEECCCTTCBCCTTEEEEEC
T ss_pred CcEEeCCEEEeecceecCCCCEEEEc
Confidence 4478999998 599999999999985
No 121
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=35.24 E-value=27 Score=29.62 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=23.5
Q ss_pred EEEc-cCCc--eEEcCCCCCHHHHHHHhCCc
Q 007593 543 IVCW-PNGE--IMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 543 ~vf~-p~g~--~~~lp~GaTv~D~a~~lgi~ 570 (597)
|.|. |+|. .++.++|.|+.|+|.+-|++
T Consensus 9 V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~ 39 (108)
T 2bt6_A 9 VHFINRDGETLTTKGKIGDSLLDVVVQNNLD 39 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHTTCC
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHcCCC
Confidence 4454 8898 88999999999999998763
No 122
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=34.79 E-value=35 Score=29.03 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=23.6
Q ss_pred EEEccCCc--eEEcCCCCCHHHHHHHhCCc
Q 007593 543 IVCWPNGE--IMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 543 ~vf~p~g~--~~~lp~GaTv~D~a~~lgi~ 570 (597)
.++.++|. .+..++|.|+.|++.+-|++
T Consensus 4 t~~~~~G~~~~~~~~~g~tll~a~~~~gi~ 33 (104)
T 3lxf_A 4 LVTTRDGTRTEIQAEPGLSLMEALRDAGID 33 (104)
T ss_dssp EEECTTSCEEEEECCTTSBHHHHHHHTTCT
T ss_pred EEEeCCCCEEEEEECCCChHHHHHHHcCCC
Confidence 36678987 67889999999999998764
No 123
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=34.69 E-value=74 Score=27.05 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=37.2
Q ss_pred EEEEcc---CCce--EEcCC-CCCHHHHHHHh----CCc---ceEEEECCeecCCC-----CcCCCCCEEEEe
Q 007593 542 VIVCWP---NGEI--MRLRS-GSTAADAAMKV----GLE---GKLVLVNGQLVLPN-----TELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p---~g~~--~~lp~-GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~-----t~L~dGD~V~i~ 596 (597)
++|-+| +|+. +++++ ..||.++=..+ |++ -++.+ +|+...-+ +-+++|++|.+.
T Consensus 30 i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-KAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp EEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC-SSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred EEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCEECCCCCcHHHCCCCCCCEEEEE
Confidence 346667 6665 56787 99999988776 776 35554 77765433 445699998875
No 124
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=34.38 E-value=27 Score=29.47 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=35.3
Q ss_pred eEEcCCCCCHHHHHHHh----CCc----ceE----EEECCeecCCCCcCCCCCEEEEeC
Q 007593 551 IMRLRSGSTAADAAMKV----GLE----GKL----VLVNGQLVLPNTELKDGDIVEVRV 597 (597)
Q Consensus 551 ~~~lp~GaTv~D~a~~l----gi~----~~~----~~VNGr~~~l~t~L~dGD~V~i~~ 597 (597)
.+.+|.++|+..++.+. ||+ +.+ =.+++..-|-++.+.|||.|.+.+
T Consensus 23 ~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 23 RLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred EEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 46789999999998886 776 333 345555666677899999998763
No 125
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=34.12 E-value=35 Score=32.42 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHh--CCcceEEEECCeec---CCCCcCCCCCEEEEe
Q 007593 556 SGSTAADAAMKV--GLEGKLVLVNGQLV---LPNTELKDGDIVEVR 596 (597)
Q Consensus 556 ~GaTv~D~a~~l--gi~~~~~~VNGr~~---~l~t~L~dGD~V~i~ 596 (597)
.|-|+.|+-.+- |+-+..+.=||+.. ..+++|+.||+|-+.
T Consensus 135 ~GktL~el~l~~~~gv~IvaI~R~g~~i~~P~~dt~L~~GD~Liv~ 180 (205)
T 1vct_A 135 VGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGDVLIGR 180 (205)
T ss_dssp TTCBHHHHCHHHHHSCEEEEEEETTEEEESCCTTCBCCTTCEEEEE
T ss_pred CCCCHHHcCCCccCCEEEEEEEECCEEEeCCCCCCEECCCCEEEEE
Confidence 488999986544 88887778889754 689999999999875
No 126
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=33.97 E-value=8.3 Score=34.68 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=20.0
Q ss_pred eEEEECCeecCC--CCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLP--NTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l--~t~L~dGD~V~i 595 (597)
-+++|||+.+.. ..+|++||+|.|
T Consensus 100 NGT~vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 100 HGTFLGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp SCEESSSCEECSSSCCEECTTCCBBC
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 468999999984 678999998865
No 127
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=33.65 E-value=51 Score=30.90 Aligned_cols=42 Identities=17% Similarity=0.015 Sum_probs=32.0
Q ss_pred EEEEccCCceEEc--CCCCCHHHHHHH-hCCc----------c--eEEEECCeecCC
Q 007593 542 VIVCWPNGEIMRL--RSGSTAADAAMK-VGLE----------G--KLVLVNGQLVLP 583 (597)
Q Consensus 542 ~~vf~p~g~~~~l--p~GaTv~D~a~~-lgi~----------~--~~~~VNGr~~~l 583 (597)
.+-|+-||+.+++ ++|.|+.|+++. +|+. | =.|.|||+.+.-
T Consensus 5 ~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG~~v~S 61 (166)
T 1n62_A 5 HIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKS 61 (166)
T ss_dssp EEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEG
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECCcEEec
Confidence 3578889998854 799999999998 5762 1 138899988653
No 128
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=33.54 E-value=32 Score=29.25 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.7
Q ss_pred EEE-ccCCce--EEcCCCCCHHHHHHHhCCc
Q 007593 543 IVC-WPNGEI--MRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 543 ~vf-~p~g~~--~~lp~GaTv~D~a~~lgi~ 570 (597)
+.| .|+|.. +..++|.|+.|+|.+-|++
T Consensus 8 v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~ 38 (109)
T 2y5c_A 8 VVFVDRSGQRIPVSGRVGDNVLHLAQRHGVD 38 (109)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHTTCC
T ss_pred EEEEcCCCCEEEEEECCCCcHHHHHHHcCCC
Confidence 345 689986 8899999999999998874
No 129
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=33.30 E-value=1.2e+02 Score=25.13 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=37.2
Q ss_pred EEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEeC
Q 007593 544 VCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVRV 597 (597)
Q Consensus 544 vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~~ 597 (597)
|=+.+|+. ++++...||.|+-.++ |++ -++. .+|+...-+. -+++|++|.+.+
T Consensus 27 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 27 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 55567775 4568899999987775 776 3554 4888765443 456799988763
No 130
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=33.07 E-value=39 Score=30.09 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=30.7
Q ss_pred EEccCCc-eEEcCCCCCHHHHHHHhCCc------------ceEEEECCee
Q 007593 544 VCWPNGE-IMRLRSGSTAADAAMKVGLE------------GKLVLVNGQL 580 (597)
Q Consensus 544 vf~p~g~-~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~ 580 (597)
.++++|. .+++++|.|+.|+|.+-|++ |++-.+.|..
T Consensus 31 ~i~~~g~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v 80 (128)
T 1doi_A 31 DLDDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDI 80 (128)
T ss_dssp CCCTTTEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCE
T ss_pred EEEeCCcEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCc
Confidence 3588998 89999999999999999874 5666678864
No 131
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=32.81 E-value=56 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.0
Q ss_pred EEc-cCC-ceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeec
Q 007593 544 VCW-PNG-EIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLV 581 (597)
Q Consensus 544 vf~-p~g-~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~ 581 (597)
.|. ++| ..+++++|.|+.|++.+-|++ |++-.++|..-
T Consensus 6 ~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~ 57 (98)
T 1iue_A 6 TLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVD 57 (98)
T ss_dssp EEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEE
T ss_pred EEEeCCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCcc
Confidence 444 444 789999999999999998874 56666788654
No 132
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=32.50 E-value=23 Score=29.36 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.4
Q ss_pred EEccCCc--eEEcCCCCCHHHHHHHhCCc
Q 007593 544 VCWPNGE--IMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 544 vf~p~g~--~~~lp~GaTv~D~a~~lgi~ 570 (597)
.|+++|. .++.++|.|+.|++.+-|++
T Consensus 4 ~i~~~g~~~~~~~~~g~tll~a~~~~gi~ 32 (93)
T 1l5p_A 4 TAVKGGVKKQLKFEDDQTLFTVLTEAGLM 32 (93)
T ss_dssp EEEETTEEEEEECCTTEEHHHHHHTTTSS
T ss_pred EEEeCCcEEEEEECCCChHHHHHHHcCCC
Confidence 3678887 88999999999999998764
No 133
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=32.41 E-value=14 Score=38.51 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEECCeecCCCCcCCCCCEEEE
Q 007593 572 KLVLVNGQLVLPNTELKDGDIVEV 595 (597)
Q Consensus 572 ~~~~VNGr~~~l~t~L~dGD~V~i 595 (597)
-+++|||+.+.-..+|++||+|.|
T Consensus 348 nGt~vng~~i~~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 348 NGVHVQHERIRSAVTLNDGDHIRI 371 (388)
T ss_dssp SCCEETTEECSSEEEECTTCEEEE
T ss_pred CCeEECCEECCCceECCCCCEEEE
Confidence 458999999977789999999976
No 134
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=31.74 E-value=58 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=26.8
Q ss_pred CceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeec
Q 007593 549 GEIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLV 581 (597)
Q Consensus 549 g~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~ 581 (597)
|..+++++|.|+.|++.+-|++ |++-.++|..-
T Consensus 15 ~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~ 59 (98)
T 1frd_A 15 DTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVD 59 (98)
T ss_dssp EEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEE
T ss_pred CEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCcc
Confidence 6899999999999999999874 45555688643
No 135
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=30.99 E-value=1.5e+02 Score=25.13 Aligned_cols=54 Identities=13% Similarity=0.321 Sum_probs=37.1
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
++|-+.+|+. ++++...||.++-.++ |++ .++. .+|+...-+. -+++|++|.+.
T Consensus 38 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 38 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp EEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE-ETTEECCSSCBTTTTTCCTTCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 3355667765 5679999999987765 776 3444 4888764444 45689998875
No 136
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=30.75 E-value=92 Score=31.10 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=35.2
Q ss_pred ceEEEEccCCceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeec
Q 007593 540 EVVIVCWPNGEIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLV 581 (597)
Q Consensus 540 ev~~vf~p~g~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~ 581 (597)
...+.|.+.|..+++++|.|+.|++.+-|++ |++-.+.|..-
T Consensus 237 ~~~v~~~~~~~~~~~~~~~~ll~a~~~~g~~~~~~C~~G~Cg~C~~~v~~G~~~ 290 (321)
T 2pia_A 237 PFTVRLSRSGTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEAD 290 (321)
T ss_dssp CEEEEETTTCCEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEE
T ss_pred cEEEEEeCCCeEEEECCCCcHHHHHHHcCCCCCCCCCCCCCCCCEEEEecCccc
Confidence 4566889999999999999999999999874 67777788654
No 137
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=30.39 E-value=44 Score=31.05 Aligned_cols=41 Identities=22% Similarity=0.130 Sum_probs=31.9
Q ss_pred EEEEccCCceEEc--CCCCCHHHHHHHh-CCc----------c--eEEEECCeecC
Q 007593 542 VIVCWPNGEIMRL--RSGSTAADAAMKV-GLE----------G--KLVLVNGQLVL 582 (597)
Q Consensus 542 ~~vf~p~g~~~~l--p~GaTv~D~a~~l-gi~----------~--~~~~VNGr~~~ 582 (597)
.+-|+-||+.+++ ++|.|+.|+++.. |+. | =.+.|||+.+.
T Consensus 4 ~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~ 59 (161)
T 1rm6_C 4 ILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRL 59 (161)
T ss_dssp EEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEE
T ss_pred eEEEEECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEe
Confidence 3578899999886 7999999999984 652 1 13889998764
No 138
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=29.99 E-value=96 Score=24.87 Aligned_cols=54 Identities=11% Similarity=0.287 Sum_probs=37.7
Q ss_pred EEEEccCCceE--EcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCcCC----CCCEEEEe
Q 007593 542 VIVCWPNGEIM--RLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTELK----DGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~~--~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~L~----dGD~V~i~ 596 (597)
++|=+.+|+.+ +++...||.++-.++ |++ -++++ +|+...-+..|. +|++|.+.
T Consensus 8 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~d~~tL~~~~i~g~~i~l~ 74 (90)
T 4dwf_A 8 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQEYNVGGKVIHLV 74 (90)
T ss_dssp EEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGGGTCTTEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCeECCCCCCHHHcCCCCcEEEEE
Confidence 34566677764 568999999988776 776 35655 888766555555 48888764
No 139
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.99 E-value=1.2e+02 Score=24.27 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=36.8
Q ss_pred EEEccCC-ce--E-EcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 543 IVCWPNG-EI--M-RLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g-~~--~-~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
+|-+.+| +. + .++...||.|+-.++ |++ -++. .+|+...-+.. +++|++|.+.
T Consensus 11 ~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~gk~L~d~~tL~~~~i~~g~~i~l~ 79 (89)
T 1wy8_A 11 QVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLF-YRGKQLENGYTLFDYDVGLNDIIQLL 79 (89)
T ss_dssp EEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE-ETTEECCSSSBHHHHTCCTTCEEEEE
T ss_pred EEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE-ECCeECCCCCCHHHCCCCCCCEEEEE
Confidence 3556677 33 5 488999999988776 776 3454 48887654443 5689988774
No 140
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=29.73 E-value=27 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=24.0
Q ss_pred EEEc---cCCceEEcCCCCCHHHHHHHhCCc
Q 007593 543 IVCW---PNGEIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 543 ~vf~---p~g~~~~lp~GaTv~D~a~~lgi~ 570 (597)
+.|. +.|..+++++|.|+.|++++-|++
T Consensus 7 v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~ 37 (98)
T 1jq4_A 7 ITAVTEDGESLRFECRSDEDVITAALRQNIF 37 (98)
T ss_dssp EEEEETTTEEEEEEEESCCTHHHHHHHHTCC
T ss_pred EEEEecCCCcEEEEeCCCChHHHHHHHcCCC
Confidence 3455 778999999999999999999874
No 141
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=29.03 E-value=41 Score=26.72 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=19.6
Q ss_pred CCeEEeeeccccccCCceEEEeCCC
Q 007593 368 GGRELLVAVSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~l~~~L~~gD~Vei~T~k 392 (597)
||+. +...++.|+.||+|+++.|-
T Consensus 48 N~~~-v~~~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 48 NDHL-IDNLNTPLKDGDVISLLPPV 71 (74)
T ss_dssp SSSE-ECCTTCCCCTTCEEEEECCB
T ss_pred CCEE-cCCCCcCCCCCCEEEEECCC
Confidence 6772 36789999999999999764
No 142
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=28.60 E-value=37 Score=27.49 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=19.3
Q ss_pred CCeEEeee----ccccccCCceEEEeCCC
Q 007593 368 GGRELLVA----VSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~----l~~~L~~gD~Vei~T~k 392 (597)
||+ .++ .++.|+.||+|+|+.+-
T Consensus 61 N~~--~v~~~~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 61 NGN--NITSMKGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp SSS--BGGGTCSSSCBCCTTCEEEEECCT
T ss_pred CCE--EccccCCCCcCCCCCCEEEEeCCC
Confidence 677 566 78999999999999764
No 143
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=28.49 E-value=77 Score=26.04 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=28.3
Q ss_pred ccCC-ceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeecC
Q 007593 546 WPNG-EIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLVL 582 (597)
Q Consensus 546 ~p~g-~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~~ 582 (597)
.|+| ..+++++|.|+.|++.+-| + |++-.++|..-.
T Consensus 8 ~~~~~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~ 56 (93)
T 1wri_A 8 TPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQ 56 (93)
T ss_dssp ETTEEEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEEC
T ss_pred ECCCeEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCc
Confidence 3766 7899999999999999998 5 455556886544
No 144
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=28.05 E-value=36 Score=30.36 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=24.3
Q ss_pred EEEEc-cCC--ceEEcCCCCCHHHHHHHhCCc
Q 007593 542 VIVCW-PNG--EIMRLRSGSTAADAAMKVGLE 570 (597)
Q Consensus 542 ~~vf~-p~g--~~~~lp~GaTv~D~a~~lgi~ 570 (597)
.|.|. |+| ..++.++|.|+.|+|.+-|++
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~ 54 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAIRNAIP 54 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHTTTCT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCC
Confidence 34555 999 889999999999999998764
No 145
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=27.45 E-value=11 Score=36.82 Aligned_cols=25 Identities=32% Similarity=0.707 Sum_probs=21.6
Q ss_pred eEEEECCeec-CCCCcCCCCCEEEEe
Q 007593 572 KLVLVNGQLV-LPNTELKDGDIVEVR 596 (597)
Q Consensus 572 ~~~~VNGr~~-~l~t~L~dGD~V~i~ 596 (597)
.-+.|||+.+ .+++.++.||+|+|.
T Consensus 120 G~V~VNG~~V~~ps~~Vk~GD~I~V~ 145 (205)
T 3r8n_D 120 KAIMVNGRVVNIASYQVSPNDVVSIR 145 (205)
T ss_dssp TCCBSSSSBCCCTTCBCCTTBCCBCC
T ss_pred CCEEECCEEEccCCcCcCCCCEEEec
Confidence 4578999999 599999999999874
No 146
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=27.11 E-value=2.3e+02 Score=22.64 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=38.0
Q ss_pred EEccCCc---eEEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCC-----CcCCCCCEEEEe
Q 007593 544 VCWPNGE---IMRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPN-----TELKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~---~~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~-----t~L~dGD~V~i~ 596 (597)
|-+.+|. .+.+....++..+..++ |++ +.+.| +|+.+..+ ..+.|||++.+.
T Consensus 12 V~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 12 VQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4567774 57789999998887765 776 45544 77777665 357899999885
No 147
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=26.75 E-value=57 Score=26.45 Aligned_cols=52 Identities=13% Similarity=0.294 Sum_probs=34.6
Q ss_pred EEEccCCc-eEE-cCCCCCHHHHHHHh----CCc---ceEEEEC--CeecC--------CCCcCCCCCEEEE
Q 007593 543 IVCWPNGE-IMR-LRSGSTAADAAMKV----GLE---GKLVLVN--GQLVL--------PNTELKDGDIVEV 595 (597)
Q Consensus 543 ~vf~p~g~-~~~-lp~GaTv~D~a~~l----gi~---~~~~~VN--Gr~~~--------l~t~L~dGD~V~i 595 (597)
.|-|++|. ++. ++..+|+.|+-..+ |++ -.+.+ + |+... -+.-|++|++|.+
T Consensus 4 ~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~-~~p~k~l~l~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 4 RCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILV-GYPPECLDLSDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp EEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE-SSCCCCCCCCCSSCBTTTSSCCTTCEEEC
T ss_pred EEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEe-CCCCcccccCCCCCCHHHcCCCCCCEEEE
Confidence 46788887 566 89999999998886 774 23333 2 23322 2345788998875
No 148
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=26.72 E-value=80 Score=26.13 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=26.9
Q ss_pred CceEEcCCCCCHHHHHHHhCCc------------ceEEEECCeec
Q 007593 549 GEIMRLRSGSTAADAAMKVGLE------------GKLVLVNGQLV 581 (597)
Q Consensus 549 g~~~~lp~GaTv~D~a~~lgi~------------~~~~~VNGr~~ 581 (597)
|..+++++|.|+.|++.+-|++ |++-.++|..-
T Consensus 15 ~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~ 59 (98)
T 1czp_A 15 KHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVD 59 (98)
T ss_dssp EEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEE
T ss_pred cEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcC
Confidence 5899999999999999998874 55666788654
No 149
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.97 E-value=1.6e+02 Score=24.49 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=36.0
Q ss_pred EEEccCC----ce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCC-C-----cCCCCCEEEEe
Q 007593 543 IVCWPNG----EI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPN-T-----ELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g----~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~-t-----~L~dGD~V~i~ 596 (597)
.|-++.| +. ++++...||.|+-..+ |++ -++ +.+|+...=+ . -+++|++|.+.
T Consensus 11 ~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL-~~~gk~L~D~~~tL~~ygI~~g~~l~l~ 82 (102)
T 1v5o_A 11 TVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQI-VYMEQLLTDDHCSLGSYGLKDGDMVVLL 82 (102)
T ss_dssp EEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCE-EETTEEECCSSSBHHHHTCCTTEEEEEC
T ss_pred EEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEE-EECCEECCCCcccHHHCCCCCCCEEEEE
Confidence 3556544 45 7789999999998876 776 344 4578765333 2 36799998874
No 150
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=25.96 E-value=1.6e+02 Score=24.11 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=34.9
Q ss_pred EEccCCceEEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 544 VCWPNGEIMRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~~~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
|-+.+--.++++...|+.++-.++ |++ -++ ..+|+...-+.. +++|++|.+.
T Consensus 24 Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk~L~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 24 VRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVV-LLAGAPLEDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp EESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEE-EETTEECCTTSBHHHHTCCSSCEEEEE
T ss_pred EECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEE-EECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 444222335779999999987776 776 344 458887654444 4589998875
No 151
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=25.87 E-value=62 Score=28.35 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=36.0
Q ss_pred Cccccccc---ccccC--CCCeeee---cCCe-------eeeeEEEEEccCCeEEeeeccccccCCceEEEeC
Q 007593 333 DTDLFQKY---SSLKM--GHPVIRV---EGSN-------LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 390 (597)
Q Consensus 333 k~~vftPk---~~Lp~--Gat~Ldf---iG~~-------~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T 390 (597)
+..++.|+ .++|. |-+...| +... -.++.|... .||+....--+..|+.||.|+..|
T Consensus 7 ~ve~l~P~G~rvsipD~pgi~lf~fh~~iN~~~~~~~~g~~~~dit~~-~~GrW~~~d~~~~lk~GD~I~Ywv 78 (107)
T 3ie4_A 7 KIDVFYPKGFEVSIPDEEGITLFAFHGKLNEEMEGLEAGTWARDIVKA-KNGRWTFRDRITALKPGDTLYYWT 78 (107)
T ss_dssp EEEECSSSCEEEEEECCTTEEEEEEEEEESSCCCSSCCCSEEEEECCC-BTTEEEEEESSCCCCTTCEEEEEE
T ss_pred EEEEeCCCCEEEEEcCCCCCEEEEEEEEeCCCCcCccccEeEEeEeEe-cCCEEEEECCCceeCCCCEEEEEE
Confidence 44567777 56665 3334444 1112 234555433 389988888899999999987654
No 152
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=25.78 E-value=2e+02 Score=23.95 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=33.1
Q ss_pred Cce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 549 GEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 549 g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
|+. ++++...||.|+-..+ |++ .++. .+|+...-+.. +++|++|.+.
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~gI~~g~~I~l~ 94 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-FAGKILKDQDTLSQHGIHDGLTVHLV 94 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE-ETTEEECTTCCTGGGTCCTTCEEEEE
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE-ECCEECCCcCcHHHcCCCCCCEEEEE
Confidence 554 5679999999987775 776 3454 48887654444 4589998764
No 153
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=31.44 E-value=15 Score=28.72 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=33.9
Q ss_pred EEEccCCc--eEEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 543 IVCWPNGE--IMRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~--~~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
+|=+++|+ .++++...|+.|+-..+ |++ .++. .+|+...-+. -+++|++|.+.
T Consensus 4 ~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~gk~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 4 FVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI-FAGKELPNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 35567776 46678899999987776 565 2333 3666553333 34578877654
No 154
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=25.47 E-value=1.6e+02 Score=23.32 Aligned_cols=53 Identities=9% Similarity=0.300 Sum_probs=36.9
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCcc---eEEEECCeecCCCCcCC----CCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLEG---KLVLVNGQLVLPNTELK----DGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~~---~~~~VNGr~~~l~t~L~----dGD~V~i~ 596 (597)
+|=+.+|+. +++++..||.++-.++ |+++ ++.+ +|+...-+..|. +|++|.+.
T Consensus 21 ~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk~L~D~~tL~~~~i~g~~i~lv 86 (88)
T 4eew_A 21 LVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGRVLQDDKKLQEYNVGGKVIHLV 86 (88)
T ss_dssp EEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBGGGGTCTTEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCEECCCCCcHHHcCCCCcEEEEE
Confidence 355667776 4678999999987776 7773 5555 888765554444 58888764
No 155
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=25.30 E-value=76 Score=25.68 Aligned_cols=53 Identities=23% Similarity=0.222 Sum_probs=36.3
Q ss_pred EEEccCCce--EEcCCCCCHHHHHHHh----CCcc---eEEEECCeecCCCCcC-----CCCCEEEEe
Q 007593 543 IVCWPNGEI--MRLRSGSTAADAAMKV----GLEG---KLVLVNGQLVLPNTEL-----KDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~~---~~~~VNGr~~~l~t~L-----~dGD~V~i~ 596 (597)
+|-+.+|+. +++++..|+.++-..+ |+++ ++. .+|+...-+..| ++|++|.+.
T Consensus 8 ~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 8 LVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHHCSTTCEEEEE
T ss_pred EEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 455666765 4678999999988776 7763 443 478766544444 589988764
No 156
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=24.76 E-value=50 Score=28.74 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=32.7
Q ss_pred EEcCCCCCHHHHHHHhCC-c-------ceE-----------------EEECCeecCC---CCcCCCCCEEEEe
Q 007593 552 MRLRSGSTAADAAMKVGL-E-------GKL-----------------VLVNGQLVLP---NTELKDGDIVEVR 596 (597)
Q Consensus 552 ~~lp~GaTv~D~a~~lgi-~-------~~~-----------------~~VNGr~~~l---~t~L~dGD~V~i~ 596 (597)
+. |.|+|+.|+...... . .-| -.|||.+++- +++|+|||.|+++
T Consensus 25 v~-t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 25 FD-TDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EE-ECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred Ec-CCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEE
Confidence 55 999999999998632 0 012 3567777775 6889999999986
No 157
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=24.57 E-value=2.3e+02 Score=24.03 Aligned_cols=54 Identities=13% Similarity=0.309 Sum_probs=37.6
Q ss_pred EEEEccCCceE--EcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCC-----CcCCCCCEEEEe
Q 007593 542 VIVCWPNGEIM--RLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPN-----TELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~~--~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~-----t~L~dGD~V~i~ 596 (597)
++|-+.+|+.+ .++...||.++-.++ |++ .++. .+|+...-+ .-+++|++|.+.
T Consensus 38 I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 38 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp EEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-ECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 33556777764 568999999988776 776 3454 488776544 345679998875
No 158
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=24.20 E-value=1.4e+02 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=36.1
Q ss_pred EEccCCc-eEEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCCc-----CCCCCEEEEe
Q 007593 544 VCWPNGE-IMRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 544 vf~p~g~-~~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
|-+.+|. .++++...||.++-..+ |++ .++. .+|+...-+.. +++|++|.+.
T Consensus 27 Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 27 VKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGKILKDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp EECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred EEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 4455654 46779999999987776 776 3554 48887654444 4589988764
No 159
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=23.66 E-value=21 Score=39.91 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=39.7
Q ss_pred ccccCCCCeeee---c----CCeeeeeEEEEEccCCeEEeeeccccccCCceEEEeCCCCC
Q 007593 341 SSLKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 394 (597)
Q Consensus 341 ~~Lp~Gat~Ldf---i----G~~~~~AkV~~v~~ng~~~lv~l~~~L~~gD~Vei~T~k~p 394 (597)
++.|.|.|+.|+ + ...+++|+| ||+ ++.|+..|..+..|+++|.+.+
T Consensus 14 ~~~~~g~t~~~ia~~~~~~~~~~~v~~~v-----ng~--~~dl~~~l~~d~~v~~~~~~~~ 67 (645)
T 1nyr_A 14 KAFDKGTTTEDIAQSISPGLRKKAVAGKF-----NGQ--LVDLTKPLETDGSIEIVTPGSE 67 (645)
T ss_dssp CBCCTTCCHHHHHHTTCHHHHHHCCEEEE-----TTE--EECTTSCCCSCBCCCEECTTSH
T ss_pred EEecCCCCHHHHHHHhhhhcccCeEEEEE-----CCE--EEeCCcccCCCCeEEEeeccch
Confidence 567889999887 2 246889998 999 8999999988889999998875
No 160
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=23.58 E-value=38 Score=28.29 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=32.9
Q ss_pred EEcCCCCCHHHHHHHh----CCc------------ceEEEECCeecCCCCcCCCCCEEEEe
Q 007593 552 MRLRSGSTAADAAMKV----GLE------------GKLVLVNGQLVLPNTELKDGDIVEVR 596 (597)
Q Consensus 552 ~~lp~GaTv~D~a~~l----gi~------------~~~~~VNGr~~~l~t~L~dGD~V~i~ 596 (597)
+++|..-|+..++..+ +++ -|+....|-...-+.++.+||+++|+
T Consensus 21 LRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Leil 81 (81)
T 2bps_A 21 LRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEIL 81 (81)
T ss_dssp EEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEEC
T ss_pred EECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEEC
Confidence 4669999998887764 442 24455556566668999999999984
No 161
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=23.38 E-value=62 Score=26.57 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=19.1
Q ss_pred CCeEEeee----ccccccCCceEEEeCCC
Q 007593 368 GGRELLVA----VSFGLAASEVVADRRPS 392 (597)
Q Consensus 368 ng~~~lv~----l~~~L~~gD~Vei~T~k 392 (597)
||+ .++ +++.|+.||+|.++.|-
T Consensus 64 N~~--~v~~~~~~~~~L~~gDeV~i~Ppv 90 (93)
T 3dwg_C 64 NDE--DVRFSGGLATAIADGDSVTILPAV 90 (93)
T ss_dssp TTE--EGGGTTGGGCBCCTTCEEEEEECC
T ss_pred CCE--EccCcCCCCcCCCCCCEEEEECCC
Confidence 677 566 69999999999999764
No 162
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.27 E-value=1.4e+02 Score=24.93 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=36.4
Q ss_pred EEEccCCc-eEEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 543 IVCWPNGE-IMRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 543 ~vf~p~g~-~~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
+|-+.+|. .++++...||.++-..| |++ .++. .+|+...-+. -+++|++|.+.
T Consensus 21 ~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 21 TVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGKILKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp EEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-ETTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred EEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCEECCCcCcHHHcCCCCCCEEEEE
Confidence 35566664 36778999999987775 776 3554 5888765443 35689988775
No 163
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.05 E-value=1.4e+02 Score=25.02 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=37.7
Q ss_pred EEEEccCCce--EEcCCCCCHHHHHHHh----CCc---ceEEEECCeecCCCC-----cCCCCCEEEEe
Q 007593 542 VIVCWPNGEI--MRLRSGSTAADAAMKV----GLE---GKLVLVNGQLVLPNT-----ELKDGDIVEVR 596 (597)
Q Consensus 542 ~~vf~p~g~~--~~lp~GaTv~D~a~~l----gi~---~~~~~VNGr~~~l~t-----~L~dGD~V~i~ 596 (597)
++|-+..|+. ++++...|+.++=.++ |++ -++. .+|+...=+. -+++|++|.+.
T Consensus 26 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 26 LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp EEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 3355567766 5779999999998876 776 3454 4888764333 45689998875
No 164
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=21.98 E-value=26 Score=28.02 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCcceEEEECCeec--CCCCcCCCCCEEEEeC
Q 007593 557 GSTAADAAMKVGLEGKLVLVNGQLV--LPNTELKDGDIVEVRV 597 (597)
Q Consensus 557 GaTv~D~a~~lgi~~~~~~VNGr~~--~l~t~L~dGD~V~i~~ 597 (597)
|-|+.|+-.+-|+.+..+.-||+.. ..+++|+.||+|-+..
T Consensus 29 Gk~l~el~~~~~~~i~~I~R~~~~~~p~~~~~l~~GD~l~v~g 71 (86)
T 3jxo_A 29 GKKLKDLPLPRDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIV 71 (86)
T ss_dssp TCBGGGSCCCSSEEEEEEEETTEEECCCTTCBCCTTCEEEEEE
T ss_pred cCCHHHCCCCCCCEEEEEEECCEEECCCCCCEECCCCEEEEEE
No 165
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=20.90 E-value=1.8e+02 Score=23.57 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=34.6
Q ss_pred CCceE---EcCCCCCHHHHHHHh----CCcc---eEE--EECCeecCCCCc-----CCCCCEEEEe
Q 007593 548 NGEIM---RLRSGSTAADAAMKV----GLEG---KLV--LVNGQLVLPNTE-----LKDGDIVEVR 596 (597)
Q Consensus 548 ~g~~~---~lp~GaTv~D~a~~l----gi~~---~~~--~VNGr~~~l~t~-----L~dGD~V~i~ 596 (597)
+|+.+ +++..+|+.|+=.++ |+++ ++. ..+|+...-+.. +++|++|.+.
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEE
Confidence 56766 669999999998876 7763 454 158887654433 4689988775
Done!