BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007594
         (597 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus
           musculus GN=Gpaa1 PE=1 SV=3
          Length = 621

 Score =  122 bits (307), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 206/473 (43%), Gaps = 67/473 (14%)

Query: 44  GINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIW 103
           G N  GI+RAPR    E++VL  P          + ++G+  ++ +      + AKDII+
Sbjct: 126 GTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGLLLALAAHFRGQIYWAKDIIF 182

Query: 104 LVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAA 163
           LV D    +     AWL  YH    + + S   +                  R+G + AA
Sbjct: 183 LVTDH---DLLGTEAWLEAYHDINVTGIQSSPLQG-----------------RAGAIQAA 222

Query: 164 LVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKW 223
           + L ++  ++   +L +  E  NGQ+PNLDL+N+       + GL   ++          
Sbjct: 223 VALELS--SDVVTSLDVTVEGLNGQLPNLDLLNLFQTFC-QKGGLLCTLQ---------- 269

Query: 224 VKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDY 283
                      GK+      DW    S    ++G  TL   +  QA G P GPHG F  Y
Sbjct: 270 -----------GKLQPQ---DWT---SLEGPLQGLQTLLLMVLRQASGRPHGPHGLFLRY 312

Query: 284 QVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSK 343
            V+A+TL        +   +    L   G+ +EG+ R +N+LLE+ HQSFF YLL + S+
Sbjct: 313 GVEALTLR-----GINSFRQYKYDLATVGKALEGMFRKLNHLLERLHQSFFFYLLPALSR 367

Query: 344 FVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSV 403
           FVS+G+YM A   L+  L + A  L+ +        E+   A S     +      L S+
Sbjct: 368 FVSIGLYMPATGFLLLVLGLKALELWMQLHQAGVNPEEAGKAPSPGTPLLPTQGVGLASL 427

Query: 404 KTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSV----WILLSILSLEILRWILVSPSSH 459
               ++      + L  YF+  +     T +F V     ++L++L++ +    L   +  
Sbjct: 428 TAPLLI---SQAMGLALYFLPVLGQHLATQHFPVAEAEAVVLTLLAIYVAGLALPHNTHR 484

Query: 460 IYG--LPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHP 510
           +    +P   W  LK   +    + LG ++++NF+   + A  MVP A +A P
Sbjct: 485 VVNSQVPDRGWMALKLVALIYLALQLGCIALLNFSLGFLLAATMVPAAALAKP 537


>sp|O43292|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo
           sapiens GN=GPAA1 PE=1 SV=3
          Length = 621

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 203/471 (43%), Gaps = 63/471 (13%)

Query: 44  GINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIW 103
           G N  GI+RAPR    E++VL  P  +       + ++G+  ++ +      + AKDI++
Sbjct: 126 GTNVYGILRAPRAASTESLVLTVPCGSDS---TNSQAVGLLLALAAHFRGQIYWAKDIVF 182

Query: 104 LVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAA 163
           LV +    +     AWL  YH    + + S   +                  R+G + AA
Sbjct: 183 LVTEH---DLLGTEAWLEAYHDVNVTGMQSSPLQG-----------------RAGAIQAA 222

Query: 164 LVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKW 223
           + L ++  ++   +L +  E  NGQ+PNLDL+N+       + GL   ++          
Sbjct: 223 VALELS--SDVVTSLDVAVEGLNGQLPNLDLLNLFQTFC-QKGGLLCTLQ---------- 269

Query: 224 VKSLGEVFESLGKMVKTLNP-DWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD 282
                      GK    L P DW    S    ++G  TL   +  QA G P G HG F  
Sbjct: 270 -----------GK----LQPEDWT---SLDGPLQGLQTLLLMVLRQASGRPHGSHGLFLR 311

Query: 283 YQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPS 342
           Y+V+A+TL        +   +    L+  G+ +EG+ R +N+LLE+ HQSFFLYLL   S
Sbjct: 312 YRVEALTLR-----GINSFRQYKYDLVAVGKALEGMFRKLNHLLERLHQSFFLYLLPGLS 366

Query: 343 KFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNS 402
           +FVS+G+YM A   L+  L + A  L+ +  +     E+   A    +         L S
Sbjct: 367 RFVSIGLYMPAVGFLLLVLGLKALELWMQLHEAGMGLEEPGGAPGPSVPLPPSQGVGLAS 426

Query: 403 -VKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIY 461
            V  + +    G  + +LP     +         +  ++L++L++      L   +  + 
Sbjct: 427 LVAPLLISQAMGLALYVLPVLGQHVATQHFPVAEAEAVVLTLLAIYAAGLALPHNTHRVV 486

Query: 462 GL--PQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHP 510
               P   W  LK   +    + LG +++ NF+   + A  MVP A +A P
Sbjct: 487 STQAPDRGWMALKLVALIYLALQLGCIALTNFSLGFLLATTMVPTAALAKP 537


>sp|Q9US48|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1
          Length = 581

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 138/319 (43%), Gaps = 62/319 (19%)

Query: 44  GINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIW 103
           G N +  +RAPRGD  E+++L  P+    G   E   + +A S+       +  +KDII 
Sbjct: 123 GSNFITTLRAPRGDATESLLLCVPWKDHIGQYNEA-GVALAISLLKYFQGWSLWSKDIIL 181

Query: 104 LVADSQ-YGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAA 162
           ++ D   YG  + + ++  D  TP  S                   KI     RSG++ A
Sbjct: 182 VIFDDPVYGPSSFLTSYF-DQTTPYISYT---------------PLKI-----RSGSIQA 220

Query: 163 ALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSK 222
            L L +     N D L +  +A+NGQ+PNLDL N +          R+ ++ F++ L  +
Sbjct: 221 GLSLELVTTENNSDVLEVLYQATNGQLPNLDLFNTIS---------RIFMQHFNYPLRLQ 271

Query: 223 WVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD 282
                G  F                  S + Y     +L   +  QA+   T  H  F  
Sbjct: 272 -----GYDFH---------------ANSGSSYTSRLKSLWMGMLTQAVSNVTSAHALFPQ 311

Query: 283 YQVDAITLEFSLR--ISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTS 340
           Y++D +TL   ++   SFD        +   G+ IE   RS+NNLLE  HQSFF Y +  
Sbjct: 312 YRIDMLTLRMKVKDPFSFD--------MFRFGQAIESTFRSLNNLLEHLHQSFFFYFILD 363

Query: 341 PSKFVSVGVYMIAFALLVA 359
              F+S+G YM +  +L A
Sbjct: 364 HLHFISIGNYMPSILILAA 382


>sp|P39012|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1
          Length = 614

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 150/324 (46%), Gaps = 79/324 (24%)

Query: 43  YGINTVGIIRAPRGDGKEAIVLVTP-YNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDI 101
           YG    G++ APRGDG EA+VL  P +N+         +LG++ + F   +R    +K+I
Sbjct: 116 YGETLYGVMHAPRGDGTEAMVLAVPWFNSDDEFNIGGAALGVSLARF--FSRWPVWSKNI 173

Query: 102 IWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMA 161
           I + +++     A + +W+  YHT    +LD                         G++ 
Sbjct: 174 IVVFSEN---PRAALRSWVEAYHT----SLD----------------------LTGGSIE 204

Query: 162 AALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNS 221
           AA+VL  +   +  + + I  +  NG++PNLDL+NI   +  H +G++V +   H L + 
Sbjct: 205 AAVVLDYSSTEDFFEYVEISYDGLNGELPNLDLVNIAISITEH-EGMKVSL---HGLPSD 260

Query: 222 KWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHG--A 279
           +   +    F S  K++     DW L                       GV   PHG  A
Sbjct: 261 QLTNN---NFWSRLKILCLGIRDWALS----------------------GVKK-PHGNEA 294

Query: 280 FRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLT 339
           F  +++ ++TL+       D        +   GR+ E + RS+NNLLEKFHQSFF YLL 
Sbjct: 295 FSGWRIQSVTLKAHGNSGHD--------ITTFGRIPEAMFRSINNLLEKFHQSFFFYLLL 346

Query: 340 SPSKFVSVGVYM-------IAFAL 356
           +P +FVS+  Y+       IAFA+
Sbjct: 347 APRQFVSISSYLPSAVALSIAFAI 370


>sp|Q9X6Y1|RPOB_AQUPY DNA-directed RNA polymerase subunit beta OS=Aquifex pyrophilus
           GN=rpoB PE=3 SV=1
          Length = 1469

 Score = 39.3 bits (90), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 151 SYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRV 210
            YG  ++GT     +L   + N  E  +  Y E     +  +DLINI+ YL   R G RV
Sbjct: 462 DYGEYKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHG-RV 520

Query: 211 KVEQFHWLLNSKWVKSLGEVFESLGKM 237
           K +    L N + V+S+GE+ E+  ++
Sbjct: 521 KKDDIAHLGNRR-VRSVGELLENQARL 546


>sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3
          Length = 696

 Score = 36.6 bits (83), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 363 VVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYF 422
           V   +L    L +N   +K    ++ +LG  + SW  L  ++ + + H W   V  L   
Sbjct: 345 VGEEALLRHVLSVNEEGQKRCEGSTRQLGRPISSWTCLLDLEGLNMRHLWRPGVKALLRM 404

Query: 423 ISQIPDSDPTTNFSVWILLSILSLEILRWILVSP 456
           I  + D+ P T   + I+ +     +L W L+SP
Sbjct: 405 IEVVEDNYPETLGRLLIVRAPRVFPVL-WTLISP 437


>sp|O67762|RPOB_AQUAE DNA-directed RNA polymerase subunit beta OS=Aquifex aeolicus
           (strain VF5) GN=rpoB PE=3 SV=1
          Length = 1468

 Score = 36.6 bits (83), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 151 SYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRV 210
            YG  ++GT     +L   +    E  +  Y E     +  +DL+NI+ YL   R G RV
Sbjct: 462 DYGEYKAGTRVTKDLLKELFKQYKEIKVKDYTEDEARFILPIDLVNILKYLIDLRHG-RV 520

Query: 211 KVEQFHWLLNSKWVKSLGEVFESLGKM 237
           K +    L N + V+S+GE+ E+  ++
Sbjct: 521 KKDDIAHLGNRR-VRSVGELLENQARL 546


>sp|B1XV89|IF2_POLNS Translation initiation factor IF-2 OS=Polynucleobacter necessarius
           subsp. necessarius (strain STIR1) GN=infB PE=3 SV=1
          Length = 917

 Score = 36.2 bits (82), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 425 QIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLG 484
           QI +++  TNF V I   I  + +   I V+  +H   +        KSA +    +G+G
Sbjct: 316 QIAEANVDTNFQVPIEPVIRDVHVPETITVAELAHAMAV--------KSAEVIKLLMGMG 367

Query: 485 LMSVINFATAEIGALLMV-PMALMAHPLKLD 514
            M  IN    +  A+++V  M   AH  KLD
Sbjct: 368 QMVTINQVLDQDTAMIIVEEMGHKAHAAKLD 398


>sp|B8I6G6|RSMH_CLOCE Ribosomal RNA small subunit methyltransferase H OS=Clostridium
           cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
           / H10) GN=rsmH PE=3 SV=1
          Length = 313

 Score = 35.8 bits (81), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 275 GPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFF 334
           GPH A R +Q   I +   L I    ++   D L  GGRL      S+ + + K   +  
Sbjct: 201 GPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRLCIITFHSLEDRIVKMQYNKM 260

Query: 335 LYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDK 383
           +   T P  F          A+L+   P+V+     + LD NP +   K
Sbjct: 261 VNPCTCPPAFPVCACGKKPKAVLINKKPIVSD---IRELDKNPRARSAK 306


>sp|Q75EW4|DHYS_ASHGO Deoxyhypusine synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS
           109.51 / FGSC 9923 / NRRL Y-1056) GN=DYS1 PE=3 SV=1
          Length = 382

 Score = 34.7 bits (78), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 59  KEAIVLVTPYNAVKGGVRETLSLGIAYSVFS-LLTRVTWLAKDIIWLVADSQYGEYAPVA 117
           K  I L    N +  G+RETL   + +++ S ++T    + +DII  +A +  GE+    
Sbjct: 99  KSTIFLGYTSNLISSGLRETLRYLVQHNMVSAIVTTAGGVEEDIIKCLAPTYLGEFTLKG 158

Query: 118 AWLRDYHTPAFSNLDSLNTETC 139
           A LRD       NL   N   C
Sbjct: 159 AALRDKGMNRIGNLLVPNNNYC 180


>sp|Q3AIK3|APT_SYNSC Adenine phosphoribosyltransferase OS=Synechococcus sp. (strain
           CC9605) GN=apt PE=3 SV=1
          Length = 172

 Score = 34.3 bits (77), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 225 KSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALG-VPTGPHGAFRDY 283
           +++ EV    G++   + PD  +GI +  ++ GA  LAS    + LG VP    G     
Sbjct: 31  EAMAEVISQFGRICDQVKPDLIVGIESRGFIFGAP-LASD---RRLGFVPVRKPGKLPG- 85

Query: 284 QVDAITLEFSLRISFDRLDRRNDFLLHGGRLI 315
             + + L+++L    DRL+ + D L H  R++
Sbjct: 86  --EVVGLDYALEYGTDRLEIQADALEHSPRVL 115


>sp|O93640|EF2_METTE Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1
          Length = 730

 Score = 33.5 bits (75), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)

Query: 186 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 233
            G MP  +         V RQ LR  V       +   L+N   V S      LG+V + 
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDH 174

Query: 234 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 273
           + K++K +NP+     WK+     D   G     S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214


>sp|Q8TRC3|EF2_METAC Elongation factor 2 OS=Methanosarcina acetivorans (strain ATCC
           35395 / DSM 2834 / JCM 12185 / C2A) GN=fusA PE=3 SV=1
          Length = 730

 Score = 33.5 bits (75), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)

Query: 186 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 233
            G MP  +         V RQ LR  V       +   L+N   V S      LG+V + 
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQIRLGKVIDH 174

Query: 234 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 273
           + K++K +NP+     WK+     D   G     S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214


>sp|Q8PUR7|EF2_METMA Elongation factor 2 OS=Methanosarcina mazei (strain ATCC BAA-159 /
           DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=fusA PE=3
           SV=1
          Length = 730

 Score = 33.1 bits (74), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)

Query: 186 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 233
            G MP  +         V RQ LR  V       +   L+N   V S      LG+V + 
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDH 174

Query: 234 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 273
           + K++K +NP+     WK+     D   G     S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214


>sp|A7I4X4|EF2_METB6 Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA
           PE=3 SV=1
          Length = 731

 Score = 33.1 bits (74), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 32/122 (26%)

Query: 180 IYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------L 227
           +  +A  G MP  +         V RQ L+ +V       +   L+N   V        L
Sbjct: 117 VLVDAVEGTMPQTE--------TVLRQALKEQVRPVLFINKVDRLVNELKVDETEMQIRL 168

Query: 228 GEVFESLGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVPTGPHG--AF 280
           G+V + + K++K +N D     WKL     D  +G     S+LY+ A+ VP    G  +F
Sbjct: 169 GKVIDKVNKLIKGMNEDLYNNGWKL-----DASKGTVAFGSALYNWAVSVPYMKKGGVSF 223

Query: 281 RD 282
           +D
Sbjct: 224 KD 225


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,898,139
Number of Sequences: 539616
Number of extensions: 9354202
Number of successful extensions: 20908
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 20881
Number of HSP's gapped (non-prelim): 28
length of query: 597
length of database: 191,569,459
effective HSP length: 123
effective length of query: 474
effective length of database: 125,196,691
effective search space: 59343231534
effective search space used: 59343231534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)