Query 007594
Match_columns 597
No_of_seqs 170 out of 227
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04114 Gaa1: Gaa1-like, GPI 100.0 3E-108 7E-113 903.4 48.6 486 43-595 2-503 (504)
2 KOG3566 Glycosylphosphatidylin 100.0 4.3E-97 9E-102 797.4 39.0 512 1-596 98-616 (617)
3 PRK10199 alkaline phosphatase 96.9 0.0087 1.9E-07 64.4 11.9 108 1-123 65-189 (346)
4 PF04389 Peptidase_M28: Peptid 95.1 0.081 1.8E-06 50.5 8.0 65 60-124 1-75 (179)
5 PF05450 Nicastrin: Nicastrin; 87.8 9.5 0.0002 39.2 12.8 123 62-203 3-137 (234)
6 KOG2194 Aminopeptidases of the 74.1 6.2 0.00013 47.2 6.3 79 42-120 126-208 (834)
7 TIGR01883 PepT-like peptidase 63.6 35 0.00076 36.2 8.9 76 44-122 49-146 (361)
8 PRK08596 acetylornithine deace 56.6 59 0.0013 35.6 9.4 78 44-122 62-165 (421)
9 KOG2526 Predicted aminopeptida 55.4 43 0.00092 37.6 7.8 79 42-121 191-287 (555)
10 TIGR01892 AcOrn-deacetyl acety 54.6 60 0.0013 34.2 8.9 76 44-124 46-145 (364)
11 PRK06133 glutamate carboxypept 54.3 79 0.0017 34.5 9.9 78 44-125 87-186 (410)
12 PRK12892 allantoate amidohydro 53.3 45 0.00097 36.2 7.8 77 45-123 62-146 (412)
13 PRK08588 succinyl-diaminopimel 51.2 88 0.0019 33.4 9.5 74 44-122 48-147 (377)
14 PRK07906 hypothetical protein; 48.6 86 0.0019 34.3 9.1 79 44-123 51-154 (426)
15 KOG3566 Glycosylphosphatidylin 47.6 83 0.0018 36.5 8.8 40 470-509 466-506 (617)
16 TIGR01879 hydantase amidase, h 46.8 74 0.0016 34.6 8.2 78 45-123 54-139 (401)
17 TIGR03107 glu_aminopep glutamy 45.7 3E+02 0.0064 30.0 12.5 97 77-212 179-284 (350)
18 PRK09864 putative peptidase; P 44.0 4.7E+02 0.01 28.7 14.0 94 78-213 177-284 (356)
19 COG2234 Iap Predicted aminopep 42.6 1.5E+02 0.0033 32.4 9.9 82 42-125 182-276 (435)
20 PRK09290 allantoate amidohydro 42.4 92 0.002 33.9 8.1 79 44-123 59-145 (413)
21 PRK05111 acetylornithine deace 41.0 1.4E+02 0.003 31.9 9.1 43 79-123 114-157 (383)
22 PRK12893 allantoate amidohydro 37.5 1.1E+02 0.0024 33.2 7.8 78 45-123 63-148 (412)
23 PRK12890 allantoate amidohydro 34.9 1.4E+02 0.003 32.5 8.0 78 44-122 60-145 (414)
24 PF09940 DUF2172: Domain of un 34.1 2.4E+02 0.0051 31.3 9.4 78 42-125 113-190 (386)
25 PF01546 Peptidase_M20: Peptid 30.6 1.4E+02 0.003 28.0 6.3 45 78-122 38-84 (189)
26 PRK07473 carboxypeptidase; Pro 29.6 3E+02 0.0065 29.7 9.5 79 44-124 61-161 (376)
27 TIGR01882 peptidase-T peptidas 29.0 1.8E+02 0.004 31.7 7.8 41 78-120 144-186 (410)
28 PRK13983 diaminopimelate amino 28.5 2.5E+02 0.0055 29.9 8.6 78 44-123 63-166 (400)
29 PRK09133 hypothetical protein; 24.7 3.4E+02 0.0074 30.2 9.0 79 44-124 88-191 (472)
30 PRK13009 succinyl-diaminopimel 23.4 3.8E+02 0.0083 28.4 8.8 76 45-124 48-149 (375)
31 PRK05469 peptidase T; Provisio 22.2 4E+02 0.0088 28.9 8.8 42 78-121 142-185 (408)
32 PRK09598 lipid A phosphoethano 20.8 6.6E+02 0.014 28.9 10.4 22 569-591 120-141 (522)
33 PRK12891 allantoate amidohydro 20.6 3.5E+02 0.0076 29.5 8.0 62 46-108 64-129 (414)
No 1
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=100.00 E-value=3.3e-108 Score=903.41 Aligned_cols=486 Identities=38% Similarity=0.565 Sum_probs=364.6
Q ss_pred ecceEEEEEcCCCCCCcceEEEEEEeccCCCCccchhhHHHHHHHHHHHhcCcccccceEEEeeCCCCCCchhHHHHHHH
Q 007594 43 YGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRD 122 (597)
Q Consensus 43 ~G~NvygIlRAPRgdgtEAiVL~~p~~~~~~~~~~~~svalaLala~yl~r~~~wAKDIIfl~tD~~~g~~~G~~AWL~a 122 (597)
+|+|||||+|||||||||||||++||++.+++.| ..|+++++|++||+||++||||||||||+|+ +..|+||||||
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~~~~n-~~~v~l~lal~~~~~~~~~wsKDii~l~~~~---~~~g~~awl~~ 77 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSDGEYN-AGGVALALALARYFRRQSYWSKDIIFLFTDD---ELAGMQAWLEA 77 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCCcccc-hhhHHHHHHHHHHhhhchhhhccEEEEecCC---cchHHHHHHHH
Confidence 6999999999999999999999999998877666 6799999999999999999999999999997 67999999999
Q ss_pred hcCCCCCCCCccccccccCCCCCcccccccccccchheeeeeEEeecCCCCCcceEEEEeecCCCCCCchhHHHHHHHHH
Q 007594 123 YHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLA 202 (597)
Q Consensus 123 Yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~raG~IqaAl~le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~ia 202 (597)
||+.+.++... ...+.|+|+||||+++|++++ .+++++|++||+|||||||||+|++++++
T Consensus 78 Yh~~~~~~~~~-----------------~~l~~~~G~i~aAl~le~~~~--~~~~v~i~~eG~NGqLPNLDL~N~~~~i~ 138 (504)
T PF04114_consen 78 YHDSNTKGLSS-----------------SPLPLRAGSIQAALVLEYPSD--SFSSVEIKYEGLNGQLPNLDLVNTVVRIA 138 (504)
T ss_pred HhCCCCccccc-----------------cCCCCCCcceeEEEEEEecCC--CccEEEEEEecCCCCCCCchHHHHHHHHH
Confidence 99975332211 123479999999999999987 46779999999999999999999999999
Q ss_pred hhccCceeeEeeecccchhhhhhchhhhHhhhhhhhhccCCCcccCCChhhHHHHHHHHHHHHHHhhcCCCCCccccccc
Q 007594 203 VHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD 282 (597)
Q Consensus 203 ~~~~G~~~~l~~~~~~~~~~w~~~~~~i~e~~g~~~~~~~p~~~~~~~~~~Y~~~l~tll~~m~~Qa~G~ptG~Hg~F~~ 282 (597)
+ ++|++++++.... .++|+ +.++|.+++++|+++|.+||+|.|+|+||.|++
T Consensus 139 ~-~~gi~~~~~~~~~------------------------~~~~~---~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~ 190 (504)
T PF04114_consen 139 E-KEGIPMGVSLHLQ------------------------PSDWH---SNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR 190 (504)
T ss_pred H-hcCCCcccccccc------------------------ccccc---cccchHHHHHHHHHHHHHhccCCCCCCchhhhh
Confidence 7 6888776643110 11111 335899999999999999999999999999999
Q ss_pred cccceEEEEEeccccccccccchhhHhhhHHHHHHHHHhhhhhhhhhhcceeeeeeCCCCceEeechhHHHHHHHHhchH
Q 007594 283 YQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLP 362 (597)
Q Consensus 283 y~IdAiTL~~~~~~~~~~~~~~~~~~~~lGr~iE~~~RSlNNLLErlHqSfFfYlL~s~~rFVSIG~Ympp~~Ll~a~l~ 362 (597)
||||||||++.+..++ +.++ +.++||++|+++||+||||||||||||||+|++++||||||+||||+++++++++
T Consensus 191 y~I~aiTl~~~~~~~~---~~~~--~~~~gr~~E~~~RslNNLlE~~HqSff~Yll~~~~~fvsig~Ylp~~~ll~~~~~ 265 (504)
T PF04114_consen 191 YRIDAITLRGVKSTGP---GPHD--FTAFGRILEGIFRSLNNLLERFHQSFFFYLLLSPSRFVSIGTYLPAAVLLAASLL 265 (504)
T ss_pred cCccEEEEecccCCCC---CCcC--HHHHHHHHHHHHHHHHHHHHhHhheeeEeEecCCceEeehHHHHHHHHHHHHHHH
Confidence 9999999987654321 2222 4689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCC--CccccccCc---cc-cccccccchhhhhHHHHHHHHHHHHHHHhHhHHhhhcCCCCC---ch
Q 007594 363 VVAASLYAKTLDLNPT--SEKDKSATS---NE-LGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDP---TT 433 (597)
Q Consensus 363 i~a~~l~~~~~~~~~~--~~~~~~~~~---~~-~~~~~~~~~~~~~~~~vl~~h~~G~~~~~lp~~~~~~~~~~~---~~ 433 (597)
++|+.+|.+.+..+.. +++++.+.. .+ .........+......+++.|+.|+.++++|....++..... ..
T Consensus 266 i~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 345 (504)
T PF04114_consen 266 ISALSLWLKSGASDISLESEYGSSAPSFWFVSLLESFGFSLPFLSVLSPLLVSHLIGFLLFLLPYLGQYIASQHFPSFRL 345 (504)
T ss_pred HHHHHHHHhCCccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhH
Confidence 9999999986532211 111100000 00 111111234677788888999999998888755444432111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Q 007594 434 NFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKL 513 (597)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~lk~~~Ll~~~~~l~~la~lNFSLa~~~al~~vPl~l~~~p~~~ 513 (597)
...++..++++..++ |.... .|+++|.++|+++|++++++|++++++|||||+++|+++||+|++++|.++
T Consensus 346 ~~~~~~~lsl~~l~l-------~~~~~--~~~~~~~llk~~~Ll~~~~~L~~la~lNFSLa~l~all~vPl~~~~~~~~~ 416 (504)
T PF04114_consen 346 ESVVLLYLSLISLLL-------PFRVV--LPPQQWALLKSFSLLLLGMFLSALATLNFSLAFLVALLLVPLCFIPRPSKQ 416 (504)
T ss_pred HHHHHHHHHHHHHHh-------ccccc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceecccCCcc
Confidence 122333333311111 32111 455799999999999999999999999999999999999999998887654
Q ss_pred ccccchh-HHHHH-----HHHHHHHhhhcChhhHHHHhhhhhhccccccHHhHHHHHhhh-hhccchhhhhhhhhhHhHH
Q 007594 514 DVRGQSL-RSILR-----MICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESL-WAWNSATYLYIGMVHLPCW 586 (597)
Q Consensus 514 ~~~~~~~-~~~~~-----~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~v~~v~~P~W 586 (597)
+...++. +.++. .++++++.++.+|+......+...+ .+... .+.++.+.++ |+||+|||++|||||||||
T Consensus 417 ~s~~r~~~~~a~L~l~~~~v~~l~ll~ls~~~~~~~~~~~~~~-~~~~~-~~~l~~~v~~~~v~G~Wt~~vv~lv~lP~W 494 (504)
T PF04114_consen 417 RSTLRSSLRSAVLLLNPPAVVLLVLLFLSFPFFPELLLKLFLD-GWQAV-MDALTFAVFDWWVYGNWTFFVVCLVWLPCW 494 (504)
T ss_pred hhhhhHHHHHHHhcccchHHHHHHHHHhhcchHHHHHHHHHhh-hhhhH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3112221 22211 1233344445455555544442222 22222 3455555555 5999999999999999999
Q ss_pred HHHHHHhcc
Q 007594 587 VLCVQILLH 595 (597)
Q Consensus 587 ~~~~~~~~~ 595 (597)
++||+++|.
T Consensus 495 ll~w~i~f~ 503 (504)
T PF04114_consen 495 LLCWNILFW 503 (504)
T ss_pred HHHHHHHcc
Confidence 999999984
No 2
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-97 Score=797.41 Aligned_cols=512 Identities=34% Similarity=0.476 Sum_probs=372.8
Q ss_pred CCccCceeeeeecccCCCCccccccccCCCccccccccccceecceEEEEEcCCCCCCcceEEEEEEeccCCCCccchhh
Q 007594 1 MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLS 80 (597)
Q Consensus 1 ~~~~g~e~~~~~f~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~G~NvygIlRAPRgdgtEAiVL~~p~~~~~~~~~~~~s 80 (597)
|+++|+|++.|+|... |+ + +..|+|||||+||||+||||+|||+|||+..+++ | ..+
T Consensus 98 ~q~FGl~t~~~n~~~~------------P~----e-----~y~G~NvyGilRAPRgdgtEsivl~vP~~~~~~~-~-~~~ 154 (617)
T KOG3566|consen 98 MQEFGLETHTQNYSNG------------PF----E-----EYSGENVYGILRAPRGDGTESIVLVVPYGRSSGS-N-SAS 154 (617)
T ss_pred HHHhCccccccCccCC------------ch----h-----hcCCceEEEEEecCCCCCcceEEEEEecccCCCc-c-hhH
Confidence 4567888888888743 11 1 2349999999999999999999999999877665 4 569
Q ss_pred HHHHHHHHHHHhcCcccccceEEEeeCCCCCCchhHHHHHHHhcCCCCCCCCccccccccCCCCCcccccccccccchhe
Q 007594 81 LGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTM 160 (597)
Q Consensus 81 valaLala~yl~r~~~wAKDIIfl~tD~~~g~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~raG~I 160 (597)
+++++||++|+|||+||||||||||+|+ ++.|++|||++||++.. .. ..+..+ .....|+|++
T Consensus 155 v~l~lsla~~f~r~~yWsKDII~v~~d~---~~~g~~AwLeaYhd~~s--~~----~~~~ep--------~~i~~ragal 217 (617)
T KOG3566|consen 155 VALLLSLADYFSRWVYWSKDIIFVFTDG---PALGLDAWLEAYHDILS--LT----GISVEP--------DEIQARAGAL 217 (617)
T ss_pred HHHHHHHHHHhcCCeeecccEEEEEeCC---ccccHHHHHHHhhcccc--cc----cccccc--------ccccccccce
Confidence 9999999999999999999999999998 78999999999999521 11 112211 1233799999
Q ss_pred eeeeEEeecCCCCCcceEEEEeecCCCCCCchhHHHHHHHHHhhccCceeeEeeecccchhhhhhchhhhHhhhhhhhhc
Q 007594 161 AAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKT 240 (597)
Q Consensus 161 qaAl~le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~ia~~~~G~~~~l~~~~~~~~~~w~~~~~~i~e~~g~~~~~ 240 (597)
++|+++|+++. ..|+++|.+||+|||||||||||+...++ +|+|+.+++++..
T Consensus 218 ~aal~l~~se~--~~d~v~i~~eglNGqlPNLDlf~i~~~~~-~k~g~~v~l~g~~------------------------ 270 (617)
T KOG3566|consen 218 AAALVLEVSEK--FQDIVEIQYEGLNGQLPNLDLFNITQIFM-QKEGLLVTLQGKL------------------------ 270 (617)
T ss_pred eeEEEEEeccc--cceeEEEEecccCCCCCcchHHHHHHHHH-HhcCceEEEecCc------------------------
Confidence 99999999965 67999999999999999999998776666 5899999998632
Q ss_pred cCCCcccCCChhhHHHHHHHHHHHHHHhhcCCCCCccccccccccceEEEEEeccccccccccchhhHhhhHHHHHHHHH
Q 007594 241 LNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIR 320 (597)
Q Consensus 241 ~~p~~~~~~~~~~Y~~~l~tll~~m~~Qa~G~ptG~Hg~F~~y~IdAiTL~~~~~~~~~~~~~~~~~~~~lGr~iE~~~R 320 (597)
+++||..+ ++|.+++++++.+++.||+|+|||+||+|++|||||+|++...++..+ ++...+.++||++|+++|
T Consensus 271 ~~~d~~s~---~~~~s~l~tl~~~l~~QA~g~ptg~Hglf~~Y~vdaLTlrr~~~~s~~---~~~~d~~~~gkaiEg~fR 344 (617)
T KOG3566|consen 271 LPLDWHSN---SMYLSGLKTLLLMLLTQASGSPTGIHGLFLRYRVDALTLRRILSDSFK---QYGYDLVRFGKAIEGMFR 344 (617)
T ss_pred CCcccccC---chhhhhHHHHHHHHHHHHhcCCCCccccccccccceEEeccccccccc---ccchHHHHHHHHHHHHHH
Confidence 24556533 489999999999999999999999999999999999999755543322 222336789999999999
Q ss_pred hhhhhhhhhhcceeeeeeCCCCceEeechhHHHHHHHHhchHHHHHHHHHhhc--CCCCCCccccccCccccccccccch
Q 007594 321 SVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTL--DLNPTSEKDKSATSNELGSVLQSWK 398 (597)
Q Consensus 321 SlNNLLErlHqSfFfYlL~s~~rFVSIG~Ympp~~Ll~a~l~i~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (597)
|+||||||||||||||+++++.||||||.|||++.+|++|+.++|+.+|++.. +....+.. . -.....+.++
T Consensus 345 sLNNLLEr~HQSFF~YlL~~~~~FiSIg~YMpa~~~Lva~l~l~A~~~wi~l~e~~~~l~~~~----~--~~~~~~~~~~ 418 (617)
T KOG3566|consen 345 SLNNLLERFHQSFFFYLLLDPSRFISIGLYMPALVILVAPLGLKAYFLWINLHEAKIGLESLA----G--HPYESVPTPV 418 (617)
T ss_pred HHHHHHHHHhhheeeeeecCccceeehHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccc----C--Ccccccccch
Confidence 99999999999999999999999999999999999999999999999999642 11111000 0 0111112234
Q ss_pred hhhhHHHHHHHHHHHHHHHhHhHHhhhcC-CCCCchhHHHHHH-HHHHHHHHHHHHhhCCCccccCCCccchhHHHHHHH
Q 007594 399 WLNSVKTVFVVHFWGATVSLLPYFISQIP-DSDPTTNFSVWIL-LSILSLEILRWILVSPSSHIYGLPQGEWATLKSATI 476 (597)
Q Consensus 399 ~~~~~~~vl~~h~~G~~~~~lp~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~lk~~~L 476 (597)
+.-....+...|+.|..+.++|++..+.. .+.|+.....+.. .+.+..+.+...+.++... +....+|.++|++.+
T Consensus 419 ~~~~~~~~~~~~L~~~~~~ll~~l~~~~~f~~~p~~~~~~l~~~~s~~~~~~~v~~~~~~v~~--~~~~~n~~ll~lv~~ 496 (617)
T KOG3566|consen 419 SQDIGLTSVLQWLLGPIVGLLPLLPSQVIFLHIPLGRAIFLVEPLSYLLLIVFVLPFSSLVLP--GLCLTNFALLKLVTI 496 (617)
T ss_pred hhcccchhhhhhHHHHHHHHHHhhhhhhhhccccccccccccchHHHHhhhheeecccccccc--ccccccHHHHHHHHH
Confidence 45455566667777777767776544332 1222222211111 1111111111111111111 133458999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccchhHHHHHHHHHHHHhhhcChhhHH-HHhhhhh-hcccc
Q 007594 477 SSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQSLRSILRMICNLVLGVISFPPATF-FVFKGVI-EGFSG 554 (597)
Q Consensus 477 l~~~~~l~~la~lNFSLa~~~al~~vPl~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~-~~~~~ 554 (597)
+...+.++++++.||+++++.+++.||+|+++.|.++-.|.+..+..+..-+..++..+..|+.-. .+.+.++ +...+
T Consensus 497 l~~pi~fi~~~~~nf~~~~~aal~~vp~~i~~~~k~~~~r~~l~p~~l~~~~~~l~~si~~~~~~~~~~~~~~~~~~~~g 576 (617)
T KOG3566|consen 497 LAVPIQFIMTTLSNFASGEFAALLPVPTLIFLEPKIPILRGRLAPLVLQAKWLALVLSIAMTAFDEEPLSKHFFLLCFFG 576 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHhccCCccccccccHHHHhhHHHHHHHHHhcchhhHHHHHHHHHHhHHHh
Confidence 999999999999999999999999999999998876655555555555555544444444553222 2333322 12244
Q ss_pred ccHH-hHHHHHhhhhhccchhhhhhhhhhHhHHHHHHHHhccC
Q 007594 555 INAG-DFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLHP 596 (597)
Q Consensus 555 ~~~~-~~~~~~~~~~~~~~~t~~~v~~v~~P~W~~~~~~~~~~ 596 (597)
.|.. .++.|-.+.|.| .|.+++++|+|||++||++.|++
T Consensus 577 l~~~~~~~s~~~~yg~w---~~~~i~~g~lpcwll~~~~~f~~ 616 (617)
T KOG3566|consen 577 LDIWNMLFSCSMRYGAW---LYFVIGTGSLPCWLLCLDGSFKK 616 (617)
T ss_pred hhhHHHHHHHHHHhhhh---hhhheeccccchhheeecccccC
Confidence 4443 334443444444 69999999999999999999986
No 3
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=96.89 E-value=0.0087 Score=64.43 Aligned_cols=108 Identities=13% Similarity=0.237 Sum_probs=72.7
Q ss_pred CCccCceeeeeecccCCCCccccccccCCCccccccccccceecceEEEEEcCCCCCCcceEEEEEEeccCC--------
Q 007594 1 MSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVK-------- 72 (597)
Q Consensus 1 ~~~~g~e~~~~~f~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~G~NvygIlRAPRgdgtEAiVL~~p~~~~~-------- 72 (597)
|+++|.||..|.|.-+ .. +...+. ..+ .....|.||+|.+.. .+.|.+++++-||+..
T Consensus 65 f~~lG~~v~~q~f~~~----~~---~~~~~g---~~~-~~~~~g~nVIa~~~G---~~~~~Ill~AH~DTV~p~~~~~~~ 130 (346)
T PRK10199 65 FQQMGYQSDIRTFNSR----YI---YTARDN---RKN-WHNVTGSTVIAAHEG---KAPQQIIIMAHLDTYAPQSDADVD 130 (346)
T ss_pred HHHCCCceEeeecccc----ce---eecccc---ccc-ccCCccceEEEEECC---CCCCeEEEEEEcCcCCCCCCCccc
Confidence 4678999998888743 00 001000 001 123579999999854 4458899999998631
Q ss_pred ---------CCccchhhHHHHHHHHHHHhcCcccccceEEEeeCCCCCCchhHHHHHHHh
Q 007594 73 ---------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDY 123 (597)
Q Consensus 73 ---------~~~~~~~svalaLala~yl~r~~~wAKDIIfl~tD~~~g~~~G~~AWL~aY 123 (597)
+-.+++.|++.+|.+++.|++.. ..++|.|+++++.-....|.++|++..
T Consensus 131 ~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~~-~~~~I~fv~~~~EE~Gl~GS~~~~~~~ 189 (346)
T PRK10199 131 ANLGGLTLQGMDDNAAGLGVMLELAERLKNVP-TEYGIRFVATSGEEEGKLGAENLLKRM 189 (346)
T ss_pred cCCCCcccCCccccHHHHHHHHHHHHHHhhCC-CCCcEEEEEECCcccCcHHHHHHHHhc
Confidence 12234578999999999998665 478999999755322368999999863
No 4
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=95.13 E-value=0.081 Score=50.52 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=46.8
Q ss_pred ceEEEEEEeccC--------CCC-ccchhhHHHHHHHHHHHhcCc-ccccceEEEeeCCCCCCchhHHHHHHHhc
Q 007594 60 EAIVLVTPYNAV--------KGG-VRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDYH 124 (597)
Q Consensus 60 EAiVL~~p~~~~--------~~~-~~~~~svalaLala~yl~r~~-~wAKDIIfl~tD~~~g~~~G~~AWL~aYh 124 (597)
|-|||.+-||+. ..+ .+++.|++++|.+||.|++.+ =..|+|+|++.|+.-....|.++|++..+
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~ 75 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDH 75 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhh
Confidence 789999999872 222 234679999999999998732 23789999998874334689999999433
No 5
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=87.81 E-value=9.5 Score=39.18 Aligned_cols=123 Identities=11% Similarity=0.139 Sum_probs=71.8
Q ss_pred EEEEEEeccCC-------CCccchhhHHHHHHHHHHHhcC----cccccceEEEeeCCCCCCchhHHHHHHHhcCCCCCC
Q 007594 62 IVLVTPYNAVK-------GGVRETLSLGIAYSVFSLLTRV----TWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSN 130 (597)
Q Consensus 62 iVL~~p~~~~~-------~~~~~~~svalaLala~yl~r~----~~wAKDIIfl~tD~~~g~~~G~~AWL~aYh~~~~~~ 130 (597)
|++++..|+.. +......|+...|+.|+.|++. +=+.|+|+|.+.++..=.|.|-+.|+.+-....+..
T Consensus 3 Ilv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f~~ 82 (234)
T PF05450_consen 3 ILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNFPS 82 (234)
T ss_pred EEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcCcc
Confidence 56666666421 1112345788889999988765 457999999998874324799999999998754320
Q ss_pred CCccccccccCCCCCcccccccccccchheeeeeEEeecCCCCCcc-eEEEEeecCCCCCCchhHHHHHHHHHh
Q 007594 131 LDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENED-TLGIYAEASNGQMPNLDLINIVHYLAV 203 (597)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~raG~IqaAl~le~~~~~~~~~-~l~I~~eG~NGqLPNLDLiN~v~~ia~ 203 (597)
. .. + ....+-..|... ||++.-+...+ .+.+.+.+.+++--+..+.+.+.+++.
T Consensus 83 ~-~~----~------------~~~i~~~~I~~~--IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~ 137 (234)
T PF05450_consen 83 D-SL----Q------------FQPISLDNIDSV--IELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAK 137 (234)
T ss_pred c-cc----c------------cccccHHHCCEE--EEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHH
Confidence 0 00 0 000233446665 46666554222 355555565555544455555555553
No 6
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=74.09 E-value=6.2 Score=47.19 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=58.6
Q ss_pred eecceEEEEEcCCCCCCcceEEEEEEeccCC---CCccchhhHHHHHHHHHHHh-cCcccccceEEEeeCCCCCCchhHH
Q 007594 42 LYGINTVGIIRAPRGDGKEAIVLVTPYNAVK---GGVRETLSLGIAYSVFSLLT-RVTWLAKDIIWLVADSQYGEYAPVA 117 (597)
Q Consensus 42 ~~G~NvygIlRAPRgdgtEAiVL~~p~~~~~---~~~~~~~svalaLala~yl~-r~~~wAKDIIfl~tD~~~g~~~G~~ 117 (597)
...+||.-.+-.--++.++++++.+-||+.- +..++..+++.+|.++|++. +..-.-+||||||-+.+-....|.+
T Consensus 126 ~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH 205 (834)
T KOG2194|consen 126 QNISNIVVKISPKNGNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSH 205 (834)
T ss_pred eeeeeEEEecCCCCCCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhcc
Confidence 4678888888777788888999999998643 22345678999999999985 5666799999999776322344555
Q ss_pred HHH
Q 007594 118 AWL 120 (597)
Q Consensus 118 AWL 120 (597)
+|.
T Consensus 206 ~FI 208 (834)
T KOG2194|consen 206 AFI 208 (834)
T ss_pred cce
Confidence 553
No 7
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=63.57 E-value=35 Score=36.18 Aligned_cols=76 Identities=9% Similarity=0.139 Sum_probs=49.5
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCCC-----------------C----ccchhhHHHHHHHHHHHhcCcccccceE
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVKG-----------------G----VRETLSLGIAYSVFSLLTRVTWLAKDII 102 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~~-----------------~----~~~~~svalaLala~yl~r~~~wAKDII 102 (597)
+.|+++.++.. + +...|++.+-.|.... . .+...+++.+|..++++++..-..++|.
T Consensus 49 ~~~~~~~~~g~-~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~~~~~~v~ 126 (361)
T TIGR01883 49 DNNLIARLPGT-V-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEETPHGTIE 126 (361)
T ss_pred CceEEEEEeCC-C-CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 67999998643 2 2246888876654211 0 1223588888888888876544567999
Q ss_pred EEee-CCCCCCchhHHHHHHH
Q 007594 103 WLVA-DSQYGEYAPVAAWLRD 122 (597)
Q Consensus 103 fl~t-D~~~g~~~G~~AWL~a 122 (597)
|+|+ |...| ..|++.|++.
T Consensus 127 ~~~~~~EE~g-~~G~~~~~~~ 146 (361)
T TIGR01883 127 FIFTVKEELG-LIGMRLFDES 146 (361)
T ss_pred EEEEcccccC-chhHhHhChh
Confidence 9995 65433 3588877653
No 8
>PRK08596 acetylornithine deacetylase; Validated
Probab=56.64 E-value=59 Score=35.60 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=50.1
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCCC------------------------CccchhhHHHHHHHHHHHhcCc-ccc
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAYSVFSLLTRVT-WLA 98 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~~------------------------~~~~~~svalaLala~yl~r~~-~wA 98 (597)
+.|+++.++.-..++...++|..-+|.... ..+...+++.++..++.+++.. -+.
T Consensus 62 ~~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~ 141 (421)
T PRK08596 62 DPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELP 141 (421)
T ss_pred CceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCC
Confidence 469999986422222246888887764210 0122457888888888887654 467
Q ss_pred cceEEEee-CCCCCCchhHHHHHHH
Q 007594 99 KDIIWLVA-DSQYGEYAPVAAWLRD 122 (597)
Q Consensus 99 KDIIfl~t-D~~~g~~~G~~AWL~a 122 (597)
+||+|+++ |...| ..|++..++.
T Consensus 142 ~~v~~~~~~dEE~g-~~G~~~~~~~ 165 (421)
T PRK08596 142 GDLIFQSVIGEEVG-EAGTLQCCER 165 (421)
T ss_pred CcEEEEEEeccccC-CcCHHHHHhc
Confidence 89999985 54433 3688888875
No 9
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=55.43 E-value=43 Score=37.62 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=52.6
Q ss_pred eecceEEEEEc-CCC----CCCcceEEEEEEeccCC--------CCccchhhHHHHHHHHHHHhcC----ccc-ccceEE
Q 007594 42 LYGINTVGIIR-APR----GDGKEAIVLVTPYNAVK--------GGVRETLSLGIAYSVFSLLTRV----TWL-AKDIIW 103 (597)
Q Consensus 42 ~~G~NvygIlR-APR----gdgtEAiVL~~p~~~~~--------~~~~~~~svalaLala~yl~r~----~~w-AKDIIf 103 (597)
..=.|+.|.+- +-| |...--|++|+.|++-. .+.| ..|+...|-|++.|++- +-- .=++.|
T Consensus 191 ~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSN-GSGvvaLLelarlfSkly~ypsTrakYnLlF 269 (555)
T KOG2526|consen 191 YKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSN-GSGVVALLELARLFSKLYDYPSTRAKYNLLF 269 (555)
T ss_pred CccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCC-CccHHHHHHHHHHHHHHhcCcccccceeEEE
Confidence 34569999998 666 34455699999997532 1223 34566667778877542 122 337888
Q ss_pred EeeCCCCCCchhHHHHHH
Q 007594 104 LVADSQYGEYAPVAAWLR 121 (597)
Q Consensus 104 l~tD~~~g~~~G~~AWL~ 121 (597)
..+++.--.+.|.+.|||
T Consensus 270 ~lt~aG~lNyqGTkkWLe 287 (555)
T KOG2526|consen 270 ILTAAGKLNYQGTKKWLE 287 (555)
T ss_pred EEccCccccccchhhhhh
Confidence 889863335799999999
No 10
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=54.64 E-value=60 Score=34.25 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=50.0
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCCC-------C----------------ccchhhHHHHHHHHHHHhcCcccccc
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVKG-------G----------------VRETLSLGIAYSVFSLLTRVTWLAKD 100 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~~-------~----------------~~~~~svalaLala~yl~r~~~wAKD 100 (597)
+.|++|.+.. .+...+++.+-.|.... . .+...+++.+|+.++++++.. +.+|
T Consensus 46 ~~nl~~~~~~---~~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~-~~~~ 121 (364)
T TIGR01892 46 KSNLVAVIGP---SGAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQ-LKKP 121 (364)
T ss_pred cccEEEEecC---CCCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcC-cCCC
Confidence 5799998742 23456888775542110 0 112357888888899998765 5789
Q ss_pred eEEEee-CCCCCCchhHHHHHHHhc
Q 007594 101 IIWLVA-DSQYGEYAPVAAWLRDYH 124 (597)
Q Consensus 101 IIfl~t-D~~~g~~~G~~AWL~aYh 124 (597)
|.|+|+ |...| ..|++..++++.
T Consensus 122 v~~~~~~~EE~g-~~G~~~~~~~~~ 145 (364)
T TIGR01892 122 LHLALTADEEVG-CTGAPKMIEAGA 145 (364)
T ss_pred EEEEEEeccccC-CcCHHHHHHhcC
Confidence 999995 54433 368999988764
No 11
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=54.27 E-value=79 Score=34.53 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=51.4
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCCC--------------------CccchhhHHHHHHHHHHHhcCcc-cccceE
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVKG--------------------GVRETLSLGIAYSVFSLLTRVTW-LAKDII 102 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~~--------------------~~~~~~svalaLala~yl~r~~~-wAKDII 102 (597)
+.|++|.+... +.-.|++..-+|.... ..+...+++.+++.++++++... ...||.
T Consensus 87 ~~~lia~~~g~---~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~ 163 (410)
T PRK06133 87 GDMVVATFKGT---GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLT 163 (410)
T ss_pred CCeEEEEECCC---CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 57999988532 2236888877764311 01223578888888898887654 357999
Q ss_pred EEee-CCCCCCchhHHHHHHHhcC
Q 007594 103 WLVA-DSQYGEYAPVAAWLRDYHT 125 (597)
Q Consensus 103 fl~t-D~~~g~~~G~~AWL~aYh~ 125 (597)
|+|+ |...| ..|...+++++..
T Consensus 164 ~~~~~dEE~g-~~G~~~~~~~~~~ 186 (410)
T PRK06133 164 VLFNPDEETG-SPGSRELIAELAA 186 (410)
T ss_pred EEEECCcccC-CccHHHHHHHHhc
Confidence 9995 54433 3589999988653
No 12
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=53.28 E-value=45 Score=36.18 Aligned_cols=77 Identities=12% Similarity=0.074 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCCCCcceEEEEEEeccCCC--CccchhhHHHHHHHHHHHhcCc-ccccceEEEee-CCCCC----CchhH
Q 007594 45 INTVGIIRAPRGDGKEAIVLVTPYNAVKG--GVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVA-DSQYG----EYAPV 116 (597)
Q Consensus 45 ~NvygIlRAPRgdgtEAiVL~~p~~~~~~--~~~~~~svalaLala~yl~r~~-~wAKDIIfl~t-D~~~g----~~~G~ 116 (597)
.|+++.++..+ ++ -.+++..-.|.... ......+++.++..++.+++.. -+.+||+|+++ |...+ ...|.
T Consensus 62 ~nl~a~~~g~~-~~-~~l~l~gH~DtVp~~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs 139 (412)
T PRK12892 62 GNVFGRLPGPG-PG-PALLVGSHLDSQNLGGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGS 139 (412)
T ss_pred CcEEEEecCCC-CC-CeEEEEccccCCCCCCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccH
Confidence 39999986533 22 46888887776421 1122457888888888888654 36889999995 65432 34689
Q ss_pred HHHHHHh
Q 007594 117 AAWLRDY 123 (597)
Q Consensus 117 ~AWL~aY 123 (597)
+++++++
T Consensus 140 ~~~~~~~ 146 (412)
T PRK12892 140 RAYAGRL 146 (412)
T ss_pred HHHHcCC
Confidence 9998644
No 13
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=51.15 E-value=88 Score=33.41 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=46.4
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCCCC------------------------ccchhhHHHHHHHHHHHhcC-cccc
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVKGG------------------------VRETLSLGIAYSVFSLLTRV-TWLA 98 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~~~------------------------~~~~~svalaLala~yl~r~-~~wA 98 (597)
+.|+++.++ + +...+++.+-+|....+ .+...+++.++..++.+++. .-+.
T Consensus 48 ~~~l~a~~g---~-~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~ 123 (377)
T PRK08588 48 RANLVAEIG---S-GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLN 123 (377)
T ss_pred CceEEEEeC---C-CCceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCC
Confidence 579998873 2 23678887766532110 02234577666666666654 3578
Q ss_pred cceEEEee-CCCCCCchhHHHHHHH
Q 007594 99 KDIIWLVA-DSQYGEYAPVAAWLRD 122 (597)
Q Consensus 99 KDIIfl~t-D~~~g~~~G~~AWL~a 122 (597)
+||.|+|+ |...| ..|+..++++
T Consensus 124 ~~i~l~~~~dEE~g-~~G~~~~~~~ 147 (377)
T PRK08588 124 GTIRLLATAGEEVG-ELGAKQLTEK 147 (377)
T ss_pred CcEEEEEEcccccC-chhHHHHHhc
Confidence 99999995 54333 3689999876
No 14
>PRK07906 hypothetical protein; Provisional
Probab=48.58 E-value=86 Score=34.25 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=48.9
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCCC-----------------------CccchhhHHHHHHHHHHHhcCc-cccc
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVKG-----------------------GVRETLSLGIAYSVFSLLTRVT-WLAK 99 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~~-----------------------~~~~~~svalaLala~yl~r~~-~wAK 99 (597)
..|+++.++.. ..+...+++..-+|.... ..+...+++.++..++++++.. -..+
T Consensus 51 ~~nv~~~~~g~-~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~ 129 (426)
T PRK07906 51 RANVVARLPGA-DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPR 129 (426)
T ss_pred ceEEEEEEeCC-CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCc
Confidence 46999988532 123356887544332110 0122347888888899887654 3567
Q ss_pred ceEEEee-CCCCCCchhHHHHHHHh
Q 007594 100 DIIWLVA-DSQYGEYAPVAAWLRDY 123 (597)
Q Consensus 100 DIIfl~t-D~~~g~~~G~~AWL~aY 123 (597)
+|.|+++ |...|...|++..++++
T Consensus 130 ~i~~~~~~dEE~g~~~g~~~l~~~~ 154 (426)
T PRK07906 130 DLVFAFVADEEAGGTYGAHWLVDNH 154 (426)
T ss_pred cEEEEEecCcccchhhhHHHHHHHH
Confidence 9999995 65444445788887765
No 15
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=47.58 E-value=83 Score=36.52 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=30.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007594 470 TLKSATISSF-FIGLGLMSVINFATAEIGALLMVPMALMAH 509 (597)
Q Consensus 470 ~lk~~~Ll~~-~~~l~~la~lNFSLa~~~al~~vPl~l~~~ 509 (597)
..|+...+.. ..++..+.+.||+++.+++++.+|+.+...
T Consensus 466 ~~~~~~v~~~~~~v~~~~~~~n~~ll~lv~~l~~pi~fi~~ 506 (617)
T KOG3566|consen 466 LLLIVFVLPFSSLVLPGLCLTNFALLKLVTILAVPIQFIMT 506 (617)
T ss_pred HhhhheeeccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 366778889999999999999999998653
No 16
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=46.77 E-value=74 Score=34.58 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCCCcceEEEEEEeccCC--CCccchhhHHHHHHHHHHHhcCcc-cccceEEEee-CCCCC----CchhH
Q 007594 45 INTVGIIRAPRGDGKEAIVLVTPYNAVK--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA-DSQYG----EYAPV 116 (597)
Q Consensus 45 ~NvygIlRAPRgdgtEAiVL~~p~~~~~--~~~~~~~svalaLala~yl~r~~~-wAKDIIfl~t-D~~~g----~~~G~ 116 (597)
.||+|.++.... +...+++..-+|... +......+++.++..++.+++... ..+||+|+++ |...+ ...|.
T Consensus 54 ~nl~a~~~g~~~-~~~~l~~~~H~DtV~~gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs 132 (401)
T TIGR01879 54 GNLIGRKEGTEP-PLEVVLSGSHIDTVVNGGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGS 132 (401)
T ss_pred CcEEEEecCCCC-CCCEEEEecccccCCCCCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccH
Confidence 499999964322 236788876666542 222334688888888999987654 7899999985 54321 34788
Q ss_pred HHHHHHh
Q 007594 117 AAWLRDY 123 (597)
Q Consensus 117 ~AWL~aY 123 (597)
+.|+...
T Consensus 133 ~~~~~~~ 139 (401)
T TIGR01879 133 RNMVGLA 139 (401)
T ss_pred HHHhccc
Confidence 8887644
No 17
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=45.70 E-value=3e+02 Score=30.04 Aligned_cols=97 Identities=7% Similarity=0.025 Sum_probs=58.7
Q ss_pred chhhHHHHHHHHHHHhcCcccccceEEEeeCCC-CCCchhHHHHHHHhcCCCCCCCCccccccccCCCCCcccccccccc
Q 007594 77 ETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQ-YGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIR 155 (597)
Q Consensus 77 ~~~svalaLala~yl~r~~~wAKDIIfl~tD~~-~g~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (597)
+-.+++.++-++|.+++.+ ...|+++++|=+. .| ..|.+ .-+|+-.+
T Consensus 179 dR~g~a~l~e~l~~l~~~~-~~~~l~~~~tvqEEvG-~rGA~--~aa~~i~p---------------------------- 226 (350)
T TIGR03107 179 NRYGVLMILELLESLKDQE-LPNTLIAGANVQEEVG-LRGAH--VSTTKFNP---------------------------- 226 (350)
T ss_pred cHHHHHHHHHHHHHhhhcC-CCceEEEEEEChhhcC-chhhh--hHHhhCCC----------------------------
Confidence 3468898999999997654 4689999997431 11 23333 34554321
Q ss_pred cchheeeeeEEeecCCCCCcc--------eEEEEeecCCCCCCchhHHHHHHHHHhhccCceeeE
Q 007594 156 RSGTMAAALVLGVAYGNENED--------TLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKV 212 (597)
Q Consensus 156 raG~IqaAl~le~~~~~~~~~--------~l~I~~eG~NGqLPNLDLiN~v~~ia~~~~G~~~~l 212 (597)
-.||++|+....+..+ -.-|. -.-.|-.+|-.+.+-+..+|+ +.|+++..
T Consensus 227 -----D~aI~vDv~~~~d~~~~~~~~lg~Gp~i~-~~D~~~i~~~~l~~~l~~~A~-~~~I~~Q~ 284 (350)
T TIGR03107 227 -----DIFFAVDCSPAGDIYGDQGGKLGEGTLLR-FFDPGHIMLPRMKDFLLTTAE-EAGIKYQY 284 (350)
T ss_pred -----CEEEEEecCCcCCCCCCCccccCCCceEE-EecCCCCCCHHHHHHHHHHHH-HcCCCcEE
Confidence 1355555543322111 11121 112488999999999999996 68888765
No 18
>PRK09864 putative peptidase; Provisional
Probab=44.00 E-value=4.7e+02 Score=28.67 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHhcCcccccceEEEeeCCCCCCchhHH-HHHHHhcCCCCCCCCccccccccCCCCCccccccccccc
Q 007594 78 TLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVA-AWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRR 156 (597)
Q Consensus 78 ~~svalaLala~yl~r~~~wAKDIIfl~tD~~~g~~~G~~-AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 156 (597)
-.|++.++-++|.++. ...|+.+++|=+ |..|.+ |-.-+|.=.+
T Consensus 177 R~g~~~lle~l~~l~~---~~~~vy~v~TvQ---EEvGlrGA~~aa~~i~P----------------------------- 221 (356)
T PRK09864 177 RIGCAMMAELLQTVNN---PEITLYGVGSVE---EEVGLRGAQTSAEHIKP----------------------------- 221 (356)
T ss_pred HHHHHHHHHHHHHhhc---CCCeEEEEEEcc---hhcchHHHHHHHhcCCC-----------------------------
Confidence 4688888888888865 678999999843 222322 2333443211
Q ss_pred chheeeeeEEeecCCCCCc--ce----E------EE-EeecCCCCCCchhHHHHHHHHHhhccCceeeEe
Q 007594 157 SGTMAAALVLGVAYGNENE--DT----L------GI-YAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE 213 (597)
Q Consensus 157 aG~IqaAl~le~~~~~~~~--~~----l------~I-~~eG~NGqLPNLDLiN~v~~ia~~~~G~~~~l~ 213 (597)
--||++|+.-..+.. +. . -| .+ -.|-.+|-.+.+-+..+|+ +.|+++.+.
T Consensus 222 ----DiaIavDvt~~~d~p~~~~~~~~~~lG~Gp~i~~~--D~~~i~~~~l~~~l~~~A~-~~~Ip~Q~~ 284 (356)
T PRK09864 222 ----DVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLF--DKRYFPNQKLVAALKSCAA-HNDLPLQFS 284 (356)
T ss_pred ----CEEEEEecccCCCCCCCcccccccccCCCCeEEEc--cCCccCCHHHHHHHHHHHH-HcCCCceEE
Confidence 125666654322111 01 1 11 11 2389999999999999996 788988764
No 19
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=42.61 E-value=1.5e+02 Score=32.39 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=53.7
Q ss_pred eecceEEEEEcCCCCCCcceEEEEEEec----------cCC---CCccchhhHHHHHHHHHHHhcCcccccceEEEeeCC
Q 007594 42 LYGINTVGIIRAPRGDGKEAIVLVTPYN----------AVK---GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADS 108 (597)
Q Consensus 42 ~~G~NvygIlRAPRgdgtEAiVL~~p~~----------~~~---~~~~~~~svalaLala~yl~r~~~wAKDIIfl~tD~ 108 (597)
....|+.+...+. .-..|+++..+.++ +.. +-.+++.|++..|-+||+|++.. ==++|.|++.+.
T Consensus 182 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~~-p~~~v~f~~~~a 259 (435)
T COG2234 182 LTSKNVAATISGS-SQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGNP-PKRTVRFVAFGA 259 (435)
T ss_pred eEEEEEeeeeecc-cccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcCC-CCceEEEEEecc
Confidence 4566666666666 34555555555442 211 11245678999999999999888 456999999765
Q ss_pred CCCCchhHHHHHHHhcC
Q 007594 109 QYGEYAPVAAWLRDYHT 125 (597)
Q Consensus 109 ~~g~~~G~~AWL~aYh~ 125 (597)
.-....|-+++.+.+..
T Consensus 260 EE~Gl~GS~~~~~~~~~ 276 (435)
T COG2234 260 EESGLLGSEAYVKRLSK 276 (435)
T ss_pred hhhcccccHHHHhcCCc
Confidence 32234778888887764
No 20
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=42.36 E-value=92 Score=33.95 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=51.6
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCCC--CccchhhHHHHHHHHHHHhcCcc-cccceEEEee-CCCCC----Cchh
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVKG--GVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA-DSQYG----EYAP 115 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~~--~~~~~~svalaLala~yl~r~~~-wAKDIIfl~t-D~~~g----~~~G 115 (597)
..|+++.++.. +.+...+++..-+|.... ..+...+++.+++.++.+++... +.+||+|+++ |...| ...|
T Consensus 59 ~~nl~a~~~g~-~~~~~~l~l~gH~DtVp~~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G 137 (413)
T PRK09290 59 VGNLFGRLEGR-DPDAPAVLTGSHLDTVPNGGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLG 137 (413)
T ss_pred CCcEEEEecCC-CCCCCEEEEecCccCCCCCCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCcccc
Confidence 36999999542 112346999888876421 12335688888888888876554 5789999996 64432 2357
Q ss_pred HHHHHHHh
Q 007594 116 VAAWLRDY 123 (597)
Q Consensus 116 ~~AWL~aY 123 (597)
.+.+++.|
T Consensus 138 ~~~~~~~~ 145 (413)
T PRK09290 138 SRVFTGAL 145 (413)
T ss_pred HHHHHccc
Confidence 77776543
No 21
>PRK05111 acetylornithine deacetylase; Provisional
Probab=40.99 E-value=1.4e+02 Score=31.90 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHhcCcccccceEEEee-CCCCCCchhHHHHHHHh
Q 007594 79 LSLGIAYSVFSLLTRVTWLAKDIIWLVA-DSQYGEYAPVAAWLRDY 123 (597)
Q Consensus 79 ~svalaLala~yl~r~~~wAKDIIfl~t-D~~~g~~~G~~AWL~aY 123 (597)
.+++.+++.++.+++.. ..+||+|+|+ |...| ..|++..++++
T Consensus 114 g~~a~~l~a~~~l~~~~-~~~~i~~~~~~~EE~g-~~G~~~~~~~~ 157 (383)
T PRK05111 114 GFFAFILEALRDIDLTK-LKKPLYILATADEETS-MAGARAFAEAT 157 (383)
T ss_pred HHHHHHHHHHHHHhhcC-CCCCeEEEEEeccccC-cccHHHHHhcC
Confidence 46777788788887654 4789999995 54433 35999999865
No 22
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=37.48 E-value=1.1e+02 Score=33.17 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCCCCcceEEEEEEeccCC--CCccchhhHHHHHHHHHHHhcCcc-cccceEEEee-CCCCC----CchhH
Q 007594 45 INTVGIIRAPRGDGKEAIVLVTPYNAVK--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA-DSQYG----EYAPV 116 (597)
Q Consensus 45 ~NvygIlRAPRgdgtEAiVL~~p~~~~~--~~~~~~~svalaLala~yl~r~~~-wAKDIIfl~t-D~~~g----~~~G~ 116 (597)
.|+++.++... .+...+++..-+|... +......+++.+|..++.+++... +.+|++|+++ |...| ...|.
T Consensus 63 ~n~~a~~~g~~-~~~~~l~l~~H~DtVp~~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~ 141 (412)
T PRK12893 63 GNLFGRRAGTD-PDAPPVLIGSHLDTQPTGGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGS 141 (412)
T ss_pred CcEEEEeCCCC-CCCCEEEEEecccCCCCCCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccH
Confidence 49999985422 1235799988777532 112234578888888999987654 6889999995 54322 13467
Q ss_pred HHHHHHh
Q 007594 117 AAWLRDY 123 (597)
Q Consensus 117 ~AWL~aY 123 (597)
..+.+++
T Consensus 142 ~~~~~~~ 148 (412)
T PRK12893 142 GVFTGAL 148 (412)
T ss_pred HHHhCcC
Confidence 6666543
No 23
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=34.89 E-value=1.4e+02 Score=32.53 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=50.7
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCC--CCccchhhHHHHHHHHHHHhcCcc-cccceEEEee-CCCCC----Cchh
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVK--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA-DSQYG----EYAP 115 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~--~~~~~~~svalaLala~yl~r~~~-wAKDIIfl~t-D~~~g----~~~G 115 (597)
+.|+++.+..... +...+++..-+|..- +..+...+++.+++.++.+++... +.+||+|+++ |...| ...|
T Consensus 60 ~~nlia~~~g~~~-~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G 138 (414)
T PRK12890 60 AGNLFGRLPGRDP-DLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIG 138 (414)
T ss_pred CCcEEEEeCCCCC-CCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCcccc
Confidence 4699999964322 334799988887542 222335688888888888876543 6899999996 54321 2356
Q ss_pred HHHHHHH
Q 007594 116 VAAWLRD 122 (597)
Q Consensus 116 ~~AWL~a 122 (597)
.+++.+.
T Consensus 139 ~~~~~~~ 145 (414)
T PRK12890 139 SRALAGT 145 (414)
T ss_pred HHHHHcc
Confidence 6666543
No 24
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=34.14 E-value=2.4e+02 Score=31.34 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=46.2
Q ss_pred eecceEEEEEcCCCCCCcceEEEEEEeccCCCCccchhhHHHHHHHHHHHhcCcccccceEEEeeCCCCCCchhHHHHHH
Q 007594 42 LYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLR 121 (597)
Q Consensus 42 ~~G~NvygIlRAPRgdgtEAiVL~~p~~~~~~~~~~~~svalaLala~yl~r~~~wAKDIIfl~tD~~~g~~~G~~AWL~ 121 (597)
..|.=.||=+.= +|...|-|++++-.--..-..|+..|++++..||+++++.+-. --.=|||.- +-.|.-+||.
T Consensus 113 ~~G~L~ygE~~i-pG~s~~EillsthiCHPsmANdnLSG~~v~~~La~~L~~~~~r-ytYRflf~P----eTIGsI~yLs 186 (386)
T PF09940_consen 113 EDGSLTYGEFVI-PGESDEEILLSTHICHPSMANDNLSGPAVLTFLAKWLKQLPNR-YTYRFLFVP----ETIGSITYLS 186 (386)
T ss_dssp ES-EEEEEEEEE---SSS-EEEEEEE----S-TTTTHHHHHHHHHHHHHHTTS--S-SEEEEEEE-----TTHHHHHHHH
T ss_pred cCCceeEEEEEe-cCCCCCeEEEEEeccCcccccccccHHHHHHHHHHHHhcCCcC-ceEEEEEcc----ccHHHHHHHH
Confidence 466666775544 5788999999986532222223466899999999999754333 455566643 3589999999
Q ss_pred HhcC
Q 007594 122 DYHT 125 (597)
Q Consensus 122 aYh~ 125 (597)
...+
T Consensus 187 kn~~ 190 (386)
T PF09940_consen 187 KNLD 190 (386)
T ss_dssp H-GG
T ss_pred HCHH
Confidence 6544
No 25
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=30.58 E-value=1.4e+02 Score=28.00 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHh-cCcccccceEEEee-CCCCCCchhHHHHHHH
Q 007594 78 TLSLGIAYSVFSLLT-RVTWLAKDIIWLVA-DSQYGEYAPVAAWLRD 122 (597)
Q Consensus 78 ~~svalaLala~yl~-r~~~wAKDIIfl~t-D~~~g~~~G~~AWL~a 122 (597)
..+++..++.++.++ ...=+.++|+|+++ |...|...|++.++++
T Consensus 38 k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~l~~~ 84 (189)
T PF01546_consen 38 KGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKHLLEE 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhhhhhh
Confidence 567777888888775 56777999999995 6555544499999987
No 26
>PRK07473 carboxypeptidase; Provisional
Probab=29.59 E-value=3e+02 Score=29.71 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=48.4
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCC--C-----------C-------ccchhhHHHHHHHHHHHhcCcc-cccceE
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVK--G-----------G-------VRETLSLGIAYSVFSLLTRVTW-LAKDII 102 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~--~-----------~-------~~~~~svalaLala~yl~r~~~-wAKDII 102 (597)
+.|+++.++.+..+ .-.+++..-+|... + + .+...+++.++..++.+++... ...||.
T Consensus 61 ~~~~~~~~~~~~~~-~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~ 139 (376)
T PRK07473 61 GDCVRARFPHPRQG-EPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPIT 139 (376)
T ss_pred CCeEEEEeCCCCCC-CCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 35788777543222 23577776665321 0 0 1124578888887888875442 345899
Q ss_pred EEee-CCCCCCchhHHHHHHHhc
Q 007594 103 WLVA-DSQYGEYAPVAAWLRDYH 124 (597)
Q Consensus 103 fl~t-D~~~g~~~G~~AWL~aYh 124 (597)
|+++ |...| ..|++++++++.
T Consensus 140 ~~~~~dEE~g-~~g~~~~~~~~~ 161 (376)
T PRK07473 140 VLFTPDEEVG-TPSTRDLIEAEA 161 (376)
T ss_pred EEEeCCcccC-CccHHHHHHHhh
Confidence 9995 55444 468999998764
No 27
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=28.98 E-value=1.8e+02 Score=31.70 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHhcC-cccccceEEEee-CCCCCCchhHHHHH
Q 007594 78 TLSLGIAYSVFSLLTRV-TWLAKDIIWLVA-DSQYGEYAPVAAWL 120 (597)
Q Consensus 78 ~~svalaLala~yl~r~-~~wAKDIIfl~t-D~~~g~~~G~~AWL 120 (597)
..++|.++..++++++. .-...+|.|+|+ |...| .|.+..+
T Consensus 144 KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g--~Ga~~l~ 186 (410)
T TIGR01882 144 KAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG--RGAHKFD 186 (410)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC--cCcchhh
Confidence 35799999999999764 335679999996 54333 3665553
No 28
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=28.49 E-value=2.5e+02 Score=29.95 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=48.9
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCCCC------------------------ccchhhHHHHHHHHHHHhcCc-ccc
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVKGG------------------------VRETLSLGIAYSVFSLLTRVT-WLA 98 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~~~------------------------~~~~~svalaLala~yl~r~~-~wA 98 (597)
+.|+++.++... +...+++..-+|..-.+ .+...+++.++..++.+++.. -+-
T Consensus 63 ~~nl~~~~~g~~--~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~ 140 (400)
T PRK13983 63 RPNIVAKIPGGD--GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPK 140 (400)
T ss_pred CccEEEEecCCC--CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCC
Confidence 589999986432 22378887766532110 112356777776677776533 467
Q ss_pred cceEEEee-CCCCCCchhHHHHHHHh
Q 007594 99 KDIIWLVA-DSQYGEYAPVAAWLRDY 123 (597)
Q Consensus 99 KDIIfl~t-D~~~g~~~G~~AWL~aY 123 (597)
+||.|+|+ |...|...|++..++++
T Consensus 141 ~~v~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 141 YNLGLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred CcEEEEEEeccccCCcccHHHHHhhc
Confidence 89999995 65444445788887764
No 29
>PRK09133 hypothetical protein; Provisional
Probab=24.67 E-value=3.4e+02 Score=30.18 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=51.2
Q ss_pred cceEEEEEcCCCCCCcceEEEEEEeccCC-----------------------CCccchhhHHHHHHHHHHHhcCc-cccc
Q 007594 44 GINTVGIIRAPRGDGKEAIVLVTPYNAVK-----------------------GGVRETLSLGIAYSVFSLLTRVT-WLAK 99 (597)
Q Consensus 44 G~NvygIlRAPRgdgtEAiVL~~p~~~~~-----------------------~~~~~~~svalaLala~yl~r~~-~wAK 99 (597)
+.|+++.++.+.. ...++|..-+|..- +..+...+++..+..++++++.. -..+
T Consensus 88 ~~nli~~~~g~~~--~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~ 165 (472)
T PRK09133 88 KGNLVARLRGTDP--KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKR 165 (472)
T ss_pred ceeEEEEecCCCC--CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCC
Confidence 5799999865432 25688865544210 11123467888888888887654 3567
Q ss_pred ceEEEee-CCCCCCchhHHHHHHHhc
Q 007594 100 DIIWLVA-DSQYGEYAPVAAWLRDYH 124 (597)
Q Consensus 100 DIIfl~t-D~~~g~~~G~~AWL~aYh 124 (597)
+|+|+++ |...+...|++..++++.
T Consensus 166 ~i~~~~~~dEE~~g~~G~~~l~~~~~ 191 (472)
T PRK09133 166 DIILALTGDEEGTPMNGVAWLAENHR 191 (472)
T ss_pred CEEEEEECccccCccchHHHHHHHHh
Confidence 9999995 544233578999888764
No 30
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=23.43 E-value=3.8e+02 Score=28.39 Aligned_cols=76 Identities=12% Similarity=-0.025 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCCCCcceEEEEEEeccCCCC------------------------ccchhhHHHHHHHHHHHhc-Cccccc
Q 007594 45 INTVGIIRAPRGDGKEAIVLVTPYNAVKGG------------------------VRETLSLGIAYSVFSLLTR-VTWLAK 99 (597)
Q Consensus 45 ~NvygIlRAPRgdgtEAiVL~~p~~~~~~~------------------------~~~~~svalaLala~yl~r-~~~wAK 99 (597)
.|+++.. . .+...+++..-+|....+ .+...+++.++..++.+++ ..=+.+
T Consensus 48 ~n~~~~~-g---~~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~ 123 (375)
T PRK13009 48 KNLWARR-G---TEGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKG 123 (375)
T ss_pred cEEEEEe-c---CCCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCc
Confidence 5898875 2 233568888777642210 0123356666665665543 223578
Q ss_pred ceEEEee-CCCCCCchhHHHHHHHhc
Q 007594 100 DIIWLVA-DSQYGEYAPVAAWLRDYH 124 (597)
Q Consensus 100 DIIfl~t-D~~~g~~~G~~AWL~aYh 124 (597)
||+|+++ |...+...|.+..++.+.
T Consensus 124 ~i~~~~~~~EE~~~~~G~~~~~~~~~ 149 (375)
T PRK13009 124 SIAFLITSDEEGPAINGTVKVLEWLK 149 (375)
T ss_pred eEEEEEEeecccccccCHHHHHHHHH
Confidence 9999995 543333358888877653
No 31
>PRK05469 peptidase T; Provisional
Probab=22.18 E-value=4e+02 Score=28.86 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHhcCc-ccccceEEEee-CCCCCCchhHHHHHH
Q 007594 78 TLSLGIAYSVFSLLTRVT-WLAKDIIWLVA-DSQYGEYAPVAAWLR 121 (597)
Q Consensus 78 ~~svalaLala~yl~r~~-~wAKDIIfl~t-D~~~g~~~G~~AWL~ 121 (597)
..+++..+..++++++.. -...+|+|+|+ |...| .|+++.+.
T Consensus 142 Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g--~Ga~~~~~ 185 (408)
T PRK05469 142 KAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG--RGADKFDV 185 (408)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC--CCHHHhhh
Confidence 356777888888887653 24569999995 54333 58888763
No 32
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=20.83 E-value=6.6e+02 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=15.5
Q ss_pred hccchhhhhhhhhhHhHHHHHHH
Q 007594 569 AWNSATYLYIGMVHLPCWVLCVQ 591 (597)
Q Consensus 569 ~~~~~t~~~v~~v~~P~W~~~~~ 591 (597)
-|++..++++.+| +|||++++.
T Consensus 120 ~~~~~~~~~~l~~-lp~~~~~~~ 141 (522)
T PRK09598 120 SVKLFIYIVVLGV-LPGYIIYKI 141 (522)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHh
Confidence 3566666666655 999998765
No 33
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=20.60 E-value=3.5e+02 Score=29.53 Aligned_cols=62 Identities=6% Similarity=-0.010 Sum_probs=43.1
Q ss_pred eEEEEEcCCCCCCcceEEEEEEeccCC--CCccchhhHHHHHHHHHHHhcCcc-cccceEEEee-CC
Q 007594 46 NTVGIIRAPRGDGKEAIVLVTPYNAVK--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA-DS 108 (597)
Q Consensus 46 NvygIlRAPRgdgtEAiVL~~p~~~~~--~~~~~~~svalaLala~yl~r~~~-wAKDIIfl~t-D~ 108 (597)
|++|.+... ..+.-.+++..-+|..- +..+...+|+.++..++.+++... +.+||.++++ |-
T Consensus 64 Nl~a~~~g~-~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dE 129 (414)
T PRK12891 64 NLFARRAGR-DPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNE 129 (414)
T ss_pred CEEEEecCC-CCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccc
Confidence 999998542 22346788877776532 222345789999999999986543 5889999985 54
Done!