BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007595
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 190/442 (42%), Gaps = 48/442 (10%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFS 580
+ G R L DH E+ YFS
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS 490
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 190/442 (42%), Gaps = 48/442 (10%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFS 580
+ G R L DH E+ YFS
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS 490
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 190/442 (42%), Gaps = 48/442 (10%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFS 580
+ G R L DH E+ YFS
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS 490
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 190/442 (42%), Gaps = 48/442 (10%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFS 580
+ G R L DH E+ YFS
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS 490
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 190/442 (42%), Gaps = 48/442 (10%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFS 580
+ G R L DH E+ YFS
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS 490
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 189/442 (42%), Gaps = 48/442 (10%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R G PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGASIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFS 580
+ G R L DH E+ YFS
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS 490
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 189/442 (42%), Gaps = 48/442 (10%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A + S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFS 580
+ G R L DH E+ YFS
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS 490
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 161/400 (40%), Gaps = 31/400 (7%)
Query: 161 SKHGGTWLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVM 220
S W LN C+ K + A+++ D +TYKEL E V
Sbjct: 69 SFQNNAWFLNGQLNACYNCV--DRHALKTPNKKAIIFEGDEPGQGY--SITYKELLEEVC 124
Query: 221 LVANALDTMFS--KGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA L KGD +A+ MPM A+I LAI G + + F++ + R+
Sbjct: 125 QVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRIND 184
Query: 279 SKAKGIFTQDFILRGGR----KFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ-QDVSWK 333
+K + T D RGG+ K + + E ++ V++ ++ + +D+ W
Sbjct: 185 GDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDW- 243
Query: 334 DFLSCVDYHPGPKYYPPVYRPVDSV--INILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH 391
+ YYP PVDS + +L++SG+TG PK + + + A +
Sbjct: 244 ----ATEKKKYKTYYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297
Query: 392 -IDMKVGDVYCWPTNLGWVMGPI-ILFSSFLSGAALALYHGSPLERSFGKF---VQDSGV 446
D DV+ ++GW+ G +++ L G A ++ G+P ++ ++ + + V
Sbjct: 298 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKV 357
Query: 447 SVLGTVPSLVKAWKNT--NCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIE 502
+ P+ ++ K + ++ +R S GE + W + K PI++
Sbjct: 358 TQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVD 417
Query: 503 CCGGTELASSYIQ--GSMLQPQAFGAFSTATMTTGFVILD 540
TE S + + P G+ S V+LD
Sbjct: 418 TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD 457
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 135/343 (39%), Gaps = 36/343 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
RMTY ++ A+ L + +KGD +A+ MP +V ++ G V V I
Sbjct: 29 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRL 88
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV-AEAGPLKAVVLPVIGDDVGIQLR 326
AA E++ L S +K ++ G P+ + A+A P V + D + +LR
Sbjct: 89 AAPEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLR 142
Query: 327 QQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA 386
P V D + I+++SGTTG PK + T S + AA
Sbjct: 143 SAAAD----------------EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAA 185
Query: 387 EAWGH-IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSG 445
+W ID++ D P + V + S + G L + + V++
Sbjct: 186 SSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER- 244
Query: 446 VSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 505
V + G VP+++ + LD R F + G + + + L K Y IE
Sbjct: 245 VCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG--APMPEALI---KIYAAKNIEVVQ 299
Query: 506 GTELASSYIQGSMLQPQ----AFGAFSTATMTTGFVILDELGV 544
G L S G++L + G+ ATM T + + GV
Sbjct: 300 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 342
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 135/343 (39%), Gaps = 36/343 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
RMTY ++ A+ L + +KGD +A+ MP +V ++ G V V I
Sbjct: 43 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRL 102
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV-AEAGPLKAVVLPVIGDDVGIQLR 326
AA E++ L S +K ++ G P+ + A+A P V + D + +LR
Sbjct: 103 AAPEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLR 156
Query: 327 QQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA 386
P V D + I+++SGTTG PK + T S + AA
Sbjct: 157 SAAAD----------------EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAA 199
Query: 387 EAWGH-IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSG 445
+W ID++ D P + V + S + G L + + V++
Sbjct: 200 SSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER- 258
Query: 446 VSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 505
V + G VP+++ + LD R F + G + + + L K Y IE
Sbjct: 259 VCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG--APMPEALI---KIYAAKNIEVVQ 313
Query: 506 GTELASSYIQGSMLQPQ----AFGAFSTATMTTGFVILDELGV 544
G L S G++L + G+ ATM T + + GV
Sbjct: 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 209 RMTYKEL-RERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+++Y EL R L + KGD + +P I++ A++ AG VV++ S
Sbjct: 55 QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSH 114
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ 327
E+ ++ + K +L G R+ ++S L V L ++ + L
Sbjct: 115 RQYELNAFIKQIQPK-------LLIGSRQHEVFSNNQFIDSLHDVNL---SPEIILMLNH 164
Query: 328 Q--DVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLS---PI 382
Q D D++ P + P D V S G+TG PK IP T +
Sbjct: 165 QATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSV 220
Query: 383 RCAAEAWG 390
R +AE G
Sbjct: 221 RASAEICG 228
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 35/251 (13%)
Query: 233 GDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
GD +A+ M A++ LAI+ G V + R VS++ DFIL
Sbjct: 85 GDRVALRMSPGAEAIVAILAILKCGAAYVPVD---------LRNPVSRS------DFIL- 128
Query: 293 GGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVY 352
A++G + P G V +R V+ C D PGP P
Sbjct: 129 -----------ADSGASALIGEPHEGCAVTRVVRTAAVA-----ECKDAEPGPVTGAPGP 172
Query: 353 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGP 412
D + ++++SGTTG PK +P + + A A D D + +L +
Sbjct: 173 GAED-MAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSV 231
Query: 413 IILFSSFLSGAALAL--YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDW 470
++ +F +GA L + + + + + D GV+V+ P+ A G D
Sbjct: 232 WEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDV 291
Query: 471 TKIRSFASTGE 481
+ +R GE
Sbjct: 292 SGLRYVIFGGE 302
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 31/199 (15%)
Query: 211 TYKELRERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAR 270
TYK+L E VAN + G AIA+ + ++ A I + I +G V I
Sbjct: 57 TYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPND 116
Query: 271 EIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDV 330
+ LR S+A F D G + P +KV L ++
Sbjct: 117 RKSFLLRDSRAAXAFVCDNNF-DGVELPPETKV---------------------LDTKNQ 154
Query: 331 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 390
S+ + LS D YP +D+ +L++SG+TG PK + ++ + + ++AWG
Sbjct: 155 SFIENLSTQDTSDILNNYP---ENLDAY--LLYTSGSTGTPKGVRVSRHN-LSSFSDAWG 208
Query: 391 HIDMKVGDVYCWPTNLGWV 409
+ +G+V LG V
Sbjct: 209 KL---IGNVAPKSLELGGV 224
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 133/359 (37%), Gaps = 37/359 (10%)
Query: 211 TYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAA 269
TY ++ VA+ L+ + +GD I + +P + V+ +L G ++ +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQD 329
E+A + S+AK + TQ + F S V V+ D + +
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDV-------KVMCVDSAPDGCLHFSELT 163
Query: 330 VSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW 389
+ ++ VD P D V+ + +SSGTTG PK + T I A+
Sbjct: 164 QADENEAPQVDISP------------DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQ-- 209
Query: 390 GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLE-------RSFGKFVQ 442
+D ++Y ++ + P+ + S L G+P+ S ++
Sbjct: 210 -QVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIE 268
Query: 443 DSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIE 502
VS+ VP ++ + + L D + +R S G + + + +K + +
Sbjct: 269 KYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ 328
Query: 503 CCGGTELASSYIQGSMLQPQAF----GAFSTATMTTGFVILD-ELGVPYPDDQPCVGEV 556
G TE + F GA T I+D E G P +QP GE+
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEI 385
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 104/279 (37%), Gaps = 49/279 (17%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
+ AN ++ D + + +P V+ +LA G + F EIA + + S
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 281 AKGIFTQDFILRGGRKFPLYSKVAEAGPLK---AVVLPVIGDDVGI----------QLRQ 327
K I T+ V + PL+ VV+ I D+ + +L Q
Sbjct: 161 TKLIITE------------ARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQ 208
Query: 328 QDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE 387
+ + V+ P D V+ + +SSGTTG PK + T + A+
Sbjct: 209 STTEASEVIDSVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256
Query: 388 AWGHIDMKVGDVYCWPTNLGWVMGPI--------ILFSSFLSGAALALYHGSPLERSFGK 439
+D + ++Y ++ + P+ I+ GAA+ + + +
Sbjct: 257 ---QVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL-E 312
Query: 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFAS 478
+Q V+V VP +V A ++ + D + IR S
Sbjct: 313 LIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKS 351
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 208 NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS 266
++++Y EL R VAN L GD +A +V A+++YLA + AG V + + +
Sbjct: 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTA 86
Query: 267 FAAREI 272
+ E+
Sbjct: 87 YTLHEL 92
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 119/321 (37%), Gaps = 35/321 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+TY E E + +A A+ + I + ++ + L + G V D +
Sbjct: 55 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCY 114
Query: 268 AAREIATRLRVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI 323
RE+ + +S+ +F IL +K P+ K+ +++ D G
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGF 166
Query: 324 QLRQQDVSWKDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLS 380
Q S F++ PG Y P + ++ I+ SSG+TG PK +
Sbjct: 167 Q------SMYTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL---- 215
Query: 381 PIRCAAEAWGHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPL 433
P R A + H D G+ T + V+ G +SG + L +
Sbjct: 216 PHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFE- 274
Query: 434 ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493
E F + +QD + VP+L + + D + + AS G + + +A
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 494 KAYYKPIIECCGGTELASSYI 514
+ + I + G TE S+ +
Sbjct: 335 RFHLPGIRQGYGLTETTSAIL 355
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 41/270 (15%)
Query: 191 DSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSKGDA-IAIDMPMTVHAVII 249
D A VWR+ ++TYK+L+E +A+ + + + + I + M +I
Sbjct: 16 DQTAFVWRD--------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIIN 67
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL 309
+L + AG+ + + S A + S AK + L
Sbjct: 68 FLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLL------------------------L 103
Query: 310 KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTG 369
A + V D+ +++ +D + KD H G P D I+++SG+TG
Sbjct: 104 SATAVTVT--DLPVRIVSED-NLKDIFFT---HKGNTPNPEHAVKGDENFYIIYTSGSTG 157
Query: 370 EPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429
PK + T + A +++ G V+ + + + ++ S ++G L
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217
Query: 430 GSPLERSFGKF--VQDSGVSVLGTVPSLVK 457
+ R F ++ S + V + PS +
Sbjct: 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAE 247
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 41/270 (15%)
Query: 191 DSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSKGDA-IAIDMPMTVHAVII 249
D A VWR+ ++TYK+L+E +A+ + + + + I + M +I
Sbjct: 16 DQTAFVWRD--------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIIN 67
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL 309
+L + AG+ + + S A + S AK + L
Sbjct: 68 FLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLL------------------------L 103
Query: 310 KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTG 369
A + V D+ +++ +D + KD H G P D I+++SG+TG
Sbjct: 104 SATAVTVT--DLPVRIVSED-NLKDIFFT---HKGNTPNPEHAVKGDENFYIIYTSGSTG 157
Query: 370 EPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429
PK + T + A +++ G V+ + + + ++ S ++G L
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217
Query: 430 GSPLERSFGKF--VQDSGVSVLGTVPSLVK 457
+ R F ++ S + V + PS +
Sbjct: 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAE 247
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 336 LSCVDYHPGPKYYPPVYRP---VDSVINILFSSGTTGEPKAIPWTQLSPIR 383
L CV P V RP D + I FSSGTTG PKAI T R
Sbjct: 141 LPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITR 191
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 208 NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS 266
+ ++Y EL R VAN L GD +A +V A+++YLA + AG V + + +
Sbjct: 27 DXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTA 86
Query: 267 FAAREI 272
+ E+
Sbjct: 87 YTLHEL 92
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 208 NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS 266
+ ++Y EL R VAN L GD +A +V A+++YLA + AG V + + +
Sbjct: 27 DXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTA 86
Query: 267 FAAREI 272
+ E+
Sbjct: 87 YTLHEL 92
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 104/275 (37%), Gaps = 55/275 (20%)
Query: 188 KEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHA 246
+ D+VA++ D +TY L ER +A+ L + + G + + +
Sbjct: 87 RAPDAVALLHEADE--------LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM 138
Query: 247 VIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEA 306
V+ LA++ AG + F +A L + A + T PL +
Sbjct: 139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSR---------PL------S 183
Query: 307 GPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSG 366
G L + D+ D + + V GP + V ++F+SG
Sbjct: 184 GRLTGTTTLYVEDEA-----ASDAPAGNLATGV----GP----------EDVACVMFTSG 224
Query: 367 TTGEPKAIPWTQLSPIRCAAEAW-GHIDMKVG--DVYCWPTNLGWVMGPIILFSSFLSGA 423
+TG PK + +SP R + G G +V+ + + W + LF + L GA
Sbjct: 225 STGRPKGV----MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280
Query: 424 ALALYHGS---PLERSFGKFVQDSGVSVLGTVPSL 455
L G PLE G+ V GV++L SL
Sbjct: 281 RCVLQSGQNPDPLE--IGELVARHGVTMLQLSASL 313
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 208 NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS 266
+ ++Y EL R VAN L GD +A +V A+++YLA + AG V + + +
Sbjct: 27 DXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTA 86
Query: 267 FAAREI 272
+ E+
Sbjct: 87 YTLHEL 92
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 356 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHID---MKVGDVYCWPTNLGWVMGP 412
+ V ++F+SG+TG PK + +SP R + D +V+ + + W
Sbjct: 214 EDVACVMFTSGSTGRPKGV----MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFG 269
Query: 413 IILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGTVPSL 455
+ LF + L GA L G PLE G+ V GV++L SL
Sbjct: 270 LELFGALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASL 313
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 211 TYKELRERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAR 270
TY+ L L+A L + ID ++ ++I+ A LA + I
Sbjct: 28 TYQNLYCEASLLAKRLKAYQQSRVGLYIDN--SIQSIILIHACWLANIEIAMINTRLTPN 85
Query: 271 EIATRLRVSKAKGIF-TQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQD 329
E+ ++R + IF T LRG + L + AG ++ + +GIQ +
Sbjct: 86 EMTNQMRSIDVQLIFCTLPLELRGFQIVSL-DDIEFAGR-DITTNGLLDNTMGIQYDTSN 143
Query: 330 VSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWT 377
V P +D + +I+F+SGTTG KA+P T
Sbjct: 144 -------ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQT 184
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 119/321 (37%), Gaps = 35/321 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+TY E E + +A A+ + I + ++ + L + G V D +
Sbjct: 55 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 114
Query: 268 AAREIATRLRVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI 323
RE+ + +S+ +F IL +K P+ K+ +++ D G
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGF 166
Query: 324 QLRQQDVSWKDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLS 380
Q S F++ PG Y P + ++ I+ SSG+TG PK +
Sbjct: 167 Q------SMYTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL---- 215
Query: 381 PIRCAAEAWGHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPL 433
P R A + H D G+ T + V+ G + G + L +
Sbjct: 216 PHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE- 274
Query: 434 ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493
E F + +QD + VP+L + + + D + + AS G + + +A
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 494 KAYYKPIIECCGGTELASSYI 514
+ + I + G TE S+ +
Sbjct: 335 RFHLPGIRQGYGLTETTSAIL 355
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 119/321 (37%), Gaps = 35/321 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+TY E E + +A A+ + I + ++ + L + G V D +
Sbjct: 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 268 AAREIATRLRVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI 323
RE+ + +S+ +F IL +K P+ K+ +++ D G
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGF 161
Query: 324 QLRQQDVSWKDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLS 380
Q S F++ PG Y P + ++ I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL---- 210
Query: 381 PIRCAAEAWGHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPL 433
P R A + H D G+ T + V+ G + G + L +
Sbjct: 211 PHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE- 269
Query: 434 ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493
E F + +QD + VP+L + + + D + + AS G + + +A
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 494 KAYYKPIIECCGGTELASSYI 514
+ + I + G TE S+ +
Sbjct: 330 RFHLPGIRQGYGLTETTSAIL 350
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 119/321 (37%), Gaps = 35/321 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+TY E E + +A A+ + I + ++ + L + G V D +
Sbjct: 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 268 AAREIATRLRVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI 323
RE+ + +S+ +F IL +K P+ K+ +++ D G
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGF 161
Query: 324 QLRQQDVSWKDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLS 380
Q S F++ PG Y P + ++ I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL---- 210
Query: 381 PIRCAAEAWGHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPL 433
P R A + H D G+ T + V+ G + G + L +
Sbjct: 211 PHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE- 269
Query: 434 ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493
E F + +QD + VP+L + + + D + + AS G + + +A
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 494 KAYYKPIIECCGGTELASSYI 514
+ + I + G TE S+ +
Sbjct: 330 RFHLPGIRQGYGLTETTSAIL 350
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 98/274 (35%), Gaps = 30/274 (10%)
Query: 191 DSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSK-GDAIAIDMPMTVHAVII 249
DS+AV+ E +++Y+EL + +A +L K G+ + + I
Sbjct: 40 DSIAVIDGE--------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYIT 91
Query: 250 YLAIILAGYVVVSIADSFAAREI-ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGP 308
+ A++ G V S E+ A ++ A I + L G F L + V E
Sbjct: 92 FFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF-LNTFVTEHSS 150
Query: 309 LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTT 368
++ V L +D G Q ++ HP + P D V S GTT
Sbjct: 151 IRVVQLL---NDSGEHNLQDAIN----------HPAEDF-TATPSPADEVAYFQLSGGTT 196
Query: 369 GEPKAIPWTQLS---PIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAAL 425
G PK IP T +R + E + + P + M FL+G +
Sbjct: 197 GTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255
Query: 426 ALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAW 459
L F ++ V+V VP V W
Sbjct: 256 VLAADPSATLCF-PLIEKHQVNVTALVPPAVSLW 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,807,334
Number of Sequences: 62578
Number of extensions: 832318
Number of successful extensions: 1490
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 38
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)