Query 007595
Match_columns 597
No_of_seqs 342 out of 3183
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 05:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 1.5E-68 5.1E-73 638.7 11.6 508 11-595 299-833 (1304)
2 1ry2_A Acetyl-coenzyme A synth 100.0 7.9E-61 2.7E-65 534.2 47.3 446 114-572 19-489 (663)
3 1pg4_A Acetyl-COA synthetase; 100.0 2E-60 7E-65 530.6 44.0 438 121-572 24-480 (652)
4 4dg8_A PA1221; ANL superfamily 100.0 6E-56 2.1E-60 490.8 30.0 336 185-570 36-382 (620)
5 3etc_A AMP-binding protein; ad 100.0 4.8E-55 1.7E-59 480.7 36.5 394 166-581 48-457 (580)
6 3ni2_A 4-coumarate:COA ligase; 100.0 3.1E-54 1.1E-58 470.8 36.6 361 185-573 31-407 (536)
7 3tsy_A Fusion protein 4-coumar 100.0 4.4E-54 1.5E-58 501.4 39.6 428 114-573 11-454 (979)
8 3g7s_A Long-chain-fatty-acid-- 100.0 5.8E-54 2E-58 470.1 35.0 363 185-571 28-406 (549)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 9.6E-54 3.3E-58 467.1 30.0 360 185-573 34-403 (539)
10 3o83_A Peptide arylation enzym 100.0 2.3E-53 8E-58 464.6 32.8 364 185-573 39-412 (544)
11 3r44_A Fatty acyl COA syntheta 100.0 8.7E-54 3E-58 465.1 29.0 360 185-579 25-393 (517)
12 4fuq_A Malonyl COA synthetase; 100.0 6.9E-53 2.3E-57 456.5 35.4 356 186-574 10-373 (503)
13 3rg2_A Enterobactin synthase c 100.0 4E-53 1.4E-57 469.5 34.1 357 190-573 39-407 (617)
14 4gr5_A Non-ribosomal peptide s 100.0 1.4E-53 4.8E-58 469.0 29.6 338 185-570 84-431 (570)
15 3rix_A Luciferase, luciferin 4 100.0 2.9E-53 9.9E-58 464.6 32.0 368 186-573 30-412 (550)
16 3e7w_A D-alanine--poly(phospho 100.0 5.2E-53 1.8E-57 458.6 33.3 345 185-571 10-367 (511)
17 3fce_A D-alanine--poly(phospho 100.0 1.4E-53 4.7E-58 463.4 28.5 347 185-571 10-368 (512)
18 1v25_A Long-chain-fatty-acid-C 100.0 1.1E-52 3.7E-57 459.0 34.6 362 185-573 27-408 (541)
19 3c5e_A Acyl-coenzyme A synthet 100.0 3E-52 1E-56 457.8 38.2 382 164-573 28-430 (570)
20 3ivr_A Putative long-chain-fat 100.0 1.1E-52 3.8E-57 455.9 32.6 357 185-578 15-377 (509)
21 2d1s_A Luciferase, luciferin 4 100.0 2.9E-52 1E-56 456.1 35.5 362 186-573 36-414 (548)
22 1amu_A GRSA, gramicidin synthe 100.0 1.4E-52 4.8E-57 459.7 31.2 335 185-570 48-394 (563)
23 3l8c_A D-alanine--poly(phospho 100.0 2.3E-52 7.8E-57 454.9 31.6 345 185-571 13-371 (521)
24 2v7b_A Benzoate-coenzyme A lig 100.0 5.3E-52 1.8E-56 452.7 34.5 368 174-572 24-402 (529)
25 3t5a_A Long-chain-fatty-acid-- 100.0 5.8E-53 2E-57 455.0 24.1 353 185-572 33-444 (480)
26 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.9E-51 6.5E-56 445.6 35.2 349 185-573 11-376 (504)
27 3kxw_A Saframycin MX1 syntheta 100.0 3.1E-50 1.1E-54 444.9 27.3 352 185-571 20-422 (590)
28 3ite_A SIDN siderophore synthe 100.0 5.7E-50 1.9E-54 440.0 28.8 350 185-569 29-395 (562)
29 3ipl_A 2-succinylbenzoate--COA 100.0 7.7E-50 2.6E-54 432.8 28.6 354 185-569 10-369 (501)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 3.7E-50 1.3E-54 435.1 25.8 335 185-573 31-378 (505)
31 3gqw_A Fatty acid AMP ligase; 100.0 2.3E-49 7.9E-54 436.7 31.2 363 185-582 30-445 (576)
32 3hgu_A EHPF; phenazine, antibi 100.0 1.7E-30 5.8E-35 269.7 15.6 196 353-558 88-318 (369)
33 4gs5_A Acyl-COA synthetase (AM 100.0 7.2E-30 2.5E-34 263.3 14.6 186 355-559 36-221 (358)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.4E-28 4.6E-33 261.8 18.5 201 352-559 88-296 (443)
35 3qov_A Phenylacetate-coenzyme 100.0 2E-28 7E-33 259.9 18.3 201 352-559 81-289 (436)
36 2y27_A Phenylacetate-coenzyme 100.0 1.9E-27 6.5E-32 252.5 19.4 201 352-559 86-294 (437)
37 2jgp_A Tyrocidine synthetase 3 98.7 7.2E-11 2.4E-15 127.6 -10.3 132 12-151 373-514 (520)
38 4hvm_A Tlmii; PSI-biology, mid 98.2 9.7E-09 3.3E-13 110.0 -9.3 132 12-153 298-467 (493)
39 1l5a_A Amide synthase, VIBH; n 98.2 5.9E-09 2E-13 109.8 -12.0 136 11-157 276-421 (436)
40 2xhg_A Tyrocidine synthetase A 96.9 7.2E-06 2.5E-10 86.8 -10.0 124 12-146 308-456 (466)
41 1q9j_A PAPA5, polyketide synth 93.7 0.0013 4.6E-08 68.1 -7.3 111 18-146 292-416 (422)
42 2y27_A Phenylacetate-coenzyme 84.4 5.3 0.00018 40.9 11.1 101 188-290 87-192 (437)
43 2y4o_A Phenylacetate-coenzyme 83.2 6 0.0002 40.6 10.9 101 188-290 89-194 (443)
44 1v25_A Long-chain-fatty-acid-C 82.4 12 0.0004 39.5 13.1 100 354-459 31-133 (541)
45 3qov_A Phenylacetate-coenzyme 82.3 6.3 0.00021 40.3 10.6 98 191-290 86-188 (436)
46 3ivr_A Putative long-chain-fat 82.1 8.2 0.00028 40.4 11.6 95 354-458 19-116 (509)
47 3rix_A Luciferase, luciferin 4 81.5 3.8 0.00013 43.5 8.8 100 355-459 34-136 (550)
48 3g7s_A Long-chain-fatty-acid-- 80.1 10 0.00035 40.1 11.6 103 354-459 32-138 (549)
49 3c5e_A Acyl-coenzyme A synthet 79.4 15 0.00051 39.1 12.7 101 354-459 56-160 (570)
50 3ni2_A 4-coumarate:COA ligase; 77.9 10 0.00035 40.0 10.8 97 354-458 35-134 (536)
51 1t5h_X 4-chlorobenzoyl COA lig 75.9 15 0.00052 38.2 11.3 98 354-459 15-117 (504)
52 3t5a_A Long-chain-fatty-acid-- 74.5 20 0.00067 36.9 11.7 104 354-461 37-148 (480)
53 1pg4_A Acetyl-COA synthetase; 74.1 15 0.00051 39.8 11.0 96 354-453 89-187 (652)
54 1amu_A GRSA, gramicidin synthe 71.6 17 0.00059 38.5 10.5 96 354-459 52-150 (563)
55 3etc_A AMP-binding protein; ad 71.3 20 0.00068 38.2 11.0 95 354-453 69-166 (580)
56 1ry2_A Acetyl-coenzyme A synth 70.9 21 0.00071 38.8 11.2 97 354-454 95-195 (663)
57 4fuq_A Malonyl COA synthetase; 70.3 15 0.00051 38.3 9.5 80 375-455 28-110 (503)
58 3kxw_A Saframycin MX1 syntheta 67.3 36 0.0012 36.0 12.1 101 354-460 24-130 (590)
59 3hgu_A EHPF; phenazine, antibi 66.8 27 0.00094 34.4 10.3 99 189-290 89-215 (369)
60 4gr5_A Non-ribosomal peptide s 66.3 23 0.00079 37.5 10.2 92 354-455 88-182 (570)
61 2v7b_A Benzoate-coenzyme A lig 66.1 21 0.00073 37.3 9.8 94 354-457 36-132 (529)
62 3o83_A Peptide arylation enzym 65.1 23 0.00079 37.3 9.8 90 354-453 43-135 (544)
63 3tsy_A Fusion protein 4-coumar 64.6 30 0.001 39.5 11.3 95 354-456 74-171 (979)
64 2d1s_A Luciferase, luciferin 4 64.0 22 0.00075 37.5 9.4 84 374-458 51-137 (548)
65 3r44_A Fatty acyl COA syntheta 63.1 28 0.00097 36.3 10.0 95 354-456 29-126 (517)
66 1mdb_A 2,3-dihydroxybenzoate-A 60.4 50 0.0017 34.6 11.4 90 354-453 38-130 (539)
67 4b2g_A GH3-1 auxin conjugating 59.1 4.1 0.00014 43.5 2.5 31 353-383 96-127 (609)
68 3ipl_A 2-succinylbenzoate--COA 57.9 26 0.0009 36.3 8.6 78 375-453 26-103 (501)
69 3fce_A D-alanine--poly(phospho 57.1 33 0.0011 35.7 9.2 89 354-452 14-105 (512)
70 3ite_A SIDN siderophore synthe 51.1 80 0.0027 33.1 11.1 97 354-453 33-134 (562)
71 3l8c_A D-alanine--poly(phospho 48.4 43 0.0015 34.8 8.3 78 375-453 29-109 (521)
72 3gqw_A Fatty acid AMP ligase; 46.2 76 0.0026 33.3 10.0 86 373-459 47-142 (576)
73 3rg2_A Enterobactin synthase c 44.8 72 0.0025 34.0 9.6 89 355-453 39-130 (617)
74 4epl_A Jasmonic acid-amido syn 43.7 7 0.00024 41.6 1.2 31 353-383 95-126 (581)
75 3e7w_A D-alanine--poly(phospho 42.7 68 0.0023 33.2 8.8 89 354-452 14-106 (511)
76 4eql_A 4-substituted benzoates 41.3 8.4 0.00029 41.0 1.3 31 353-383 90-121 (581)
77 3vc3_A Beta-cyanoalnine syntha 40.7 89 0.003 30.6 8.7 79 209-288 62-141 (344)
78 4dg8_A PA1221; ANL superfamily 40.1 85 0.0029 33.6 9.2 89 354-452 40-131 (620)
79 3nyq_A Malonyl-COA ligase; A/B 40.0 67 0.0023 33.2 8.2 78 374-454 47-124 (505)
80 3tbh_A O-acetyl serine sulfhyd 35.2 1.3E+02 0.0044 29.2 8.9 79 210-289 48-127 (334)
81 3ezx_A MMCP 1, monomethylamine 32.6 2.7E+02 0.0093 24.9 11.7 89 398-489 93-193 (215)
82 4h1h_A LMO1638 protein; MCCF-l 30.7 1.5E+02 0.0052 28.7 8.5 62 230-291 9-89 (327)
83 2vsq_A Surfactin synthetase su 25.5 1.7E+02 0.0057 34.6 9.1 92 354-455 477-571 (1304)
84 4e5s_A MCCFLIKE protein (BA_56 24.9 2.2E+02 0.0074 27.6 8.4 62 230-291 9-89 (331)
85 4e4g_A Methylmalonate-semialde 24.7 2.5E+02 0.0086 29.1 9.4 64 399-462 165-238 (521)
86 3isl_A Purine catabolism prote 24.2 4.8E+02 0.016 25.3 11.3 143 219-386 72-220 (416)
87 3ri6_A O-acetylhomoserine sulf 24.0 3.1E+02 0.011 27.5 9.8 56 230-287 118-174 (430)
88 3ju7_A Putative PLP-dependent 24.0 2.1E+02 0.0072 28.0 8.4 62 223-287 67-136 (377)
89 3tla_A MCCF; serine protease, 23.2 1.8E+02 0.0063 28.7 7.5 62 230-291 40-120 (371)
90 2duw_A Putative COA-binding pr 22.7 1.2E+02 0.004 25.4 5.2 52 232-284 70-121 (145)
91 1eg5_A Aminotransferase; PLP-d 22.2 3.5E+02 0.012 25.8 9.7 58 230-288 86-147 (384)
92 3ju8_A Succinylglutamic semial 21.9 3.1E+02 0.011 28.1 9.4 64 399-462 142-215 (490)
93 3dzz_A Putative pyridoxal 5'-p 21.9 3.3E+02 0.011 26.2 9.4 56 230-288 106-168 (391)
94 1t90_A MMSDH, probable methylm 20.7 3.2E+02 0.011 28.0 9.1 76 398-481 143-228 (486)
95 3sr3_A Microcin immunity prote 20.6 1.6E+02 0.0056 28.6 6.5 62 230-291 10-90 (336)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.5e-68 Score=638.67 Aligned_cols=508 Identities=15% Similarity=0.142 Sum_probs=393.9
Q ss_pred hhHHhcCCccchhhhHHHHHHHhhccCCCC-CcHHHHHHHHHhhccCCCCCchhHHHHHHHhhcccccccCCC-------
Q 007595 11 VDLVKVGLKVDEAEDFDNILKQLIDGSKGL-DPKEIWKELVARKVFKPWHPHGLHQLLYYSVYNDWDASINGP------- 82 (597)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~lv~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~------- 82 (597)
.+.+++++.+++..+|.++|++++++..++ +||++||++ +++.++ ++|+ ||+||++++.....
T Consensus 299 vntlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~------~~~l--f~~~~~~~~~~~~~~~~~~~~ 369 (1304)
T 2vsq_A 299 INVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD------QPKL--IDHIIVFENYPLQDAKNEESS 369 (1304)
T ss_dssp CEEEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS------CSSS--CCCEEEECSSCHHHHSCCCHH
T ss_pred eeEEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC------CCcc--cceeEEEeecccccccccccc
Confidence 355678889999999999999999998888 999999999 999884 4577 99999988642110
Q ss_pred --CccccC-CccccccccHHHHHHHhCCcccccc-CCCCCCCHHHHHHHHhhCHHHHHHHHHHHcCceeecccccc--cc
Q 007595 83 --PLYWFP-SLDQSKLTNLGHAMEIHGPKFLGAM-YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKCI--LD 156 (597)
Q Consensus 83 --~~~~~~-~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~ 156 (597)
.....+ .....++|||++.+. .++++.+.+ |++ ++|++.++++|.++|.++|+++..+++.+..++ +.
T Consensus 370 ~~g~~~~~~~~~~~~~~dL~l~~~-~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~ 443 (1304)
T 2vsq_A 370 ENGFDMVDVHVFEKSNYDLNLMAS-PGDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVD 443 (1304)
T ss_dssp HHSEEEEEEEECCCCCSSEEEEEE-CSSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCC
T ss_pred cCCceeEeeecccccccCeEEEEe-cCCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCC
Confidence 000000 011356889888654 356788899 999 999999999999999999999987766665543 33
Q ss_pred CCCCCCCCCCcCCCCcchHhhhhccC--ccccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCC
Q 007595 157 RTDKSKHGGTWLPGSVLNVAECCLLP--SSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKG 233 (597)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~g 233 (597)
..++......|+.+..... ..+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|
T Consensus 444 ~~e~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g 514 (1304)
T 2vsq_A 444 DREREFLLTGLNPPAQAHE-TKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKG 514 (1304)
T ss_dssp HHHHHHHHTTTSCCCCCCC-CCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCc
Confidence 2222222345665433222 122322 236689999999998765 999999999999999999999 9999
Q ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEE
Q 007595 234 DAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVV 313 (597)
Q Consensus 234 d~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (597)
++|+|+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++..........+ .....++
T Consensus 515 ~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~ 586 (1304)
T 2vsq_A 515 SVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLF 586 (1304)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999875421110000 0011111
Q ss_pred EecCCCccccccccCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcC
Q 007595 314 LPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHID 393 (597)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~ 393 (597)
+. .. ..... .. ..+.....++++|||+|||||||+||||+++|+++.+. .+....++
T Consensus 587 ~~--~~-------------~~~~~-~~------~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~ 643 (1304)
T 2vsq_A 587 ID--DQ-------------TRFEE-QA------SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMA 643 (1304)
T ss_dssp SS--CG-------------GGGGS-CS------SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSC
T ss_pred ec--cc-------------ccccc-cc------CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcC
Confidence 11 00 00000 00 11223456899999999999999999999999999876 55556788
Q ss_pred CCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC--CCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCC
Q 007595 394 MKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG--SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWT 471 (597)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~--~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~ 471 (597)
++++|++++.++++|+.+.+++|.+|++|+++++.+. ..++..+.+.|++++||++.++|++++.|.+.. ...++
T Consensus 644 ~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~ 720 (1304)
T 2vsq_A 644 FSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMK 720 (1304)
T ss_dssp CCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCC
Confidence 8999999999999999999999999999999999874 357889999999999999999999999998653 22367
Q ss_pred CccEEEeeCCCCCcchHHHHHHhcCCCCeecccCcccccccccccCCC---CCCCcCccCCCCCCcEEEEEcCCCCcCCC
Q 007595 472 KIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML---QPQAFGAFSTATMTTGFVILDELGVPYPD 548 (597)
Q Consensus 472 sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~IlD~~~~~vp~ 548 (597)
+||.+++|||++++++.+++.+.+++++++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.
T Consensus 721 ~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~ 800 (1304)
T 2vsq_A 721 GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPF 800 (1304)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCT
T ss_pred CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCC
Confidence 899999999999999988888887778999999999998765543321 22345689999999999999999999999
Q ss_pred CCCceeeEEE-----ecccCCCchhhhccccccccccccccccceeeeeCCC
Q 007595 549 DQPCVGEVGL-----FPLYLGATDRLLNADHEEVYFSGMPIYKGMVCVDLPF 595 (597)
Q Consensus 549 G~~giGel~v-----~~gy~~~~~~~~~~~~~~~~~~~~p~~t~~rf~~~pf 595 (597)
|++ |||+| ++||+ ++|+.|+++|+++||
T Consensus 801 G~~--GEl~i~G~~v~~GY~-----------------~~p~~T~~~f~~~p~ 833 (1304)
T 2vsq_A 801 GAV--GELCISGMGVSKGYV-----------------NRADLTKEKFIENPF 833 (1304)
T ss_dssp TCC--EEEEEEETTCCCCBT-----------------TCHHHHHHHEEECTT
T ss_pred CCc--eEEEEeccccCcccc-----------------CCcccchhhhccCCC
Confidence 995 99999 34444 455566666666665
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=7.9e-61 Score=534.25 Aligned_cols=446 Identities=21% Similarity=0.343 Sum_probs=351.4
Q ss_pred CCCCCCCHHHHHHHHhhCHHHHHHHHHHHcCceeeccccccccCC---C-CCCCCCCcCCCCcchHhhhhccCccccCCC
Q 007595 114 YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKCILDRT---D-KSKHGGTWLPGSVLNVAECCLLPSSRLRKE 189 (597)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~ 189 (597)
+...+.+|..+.+++++++..||..+.+.. +.|.+++.++++.. . ...+...|+.++.+|.+.+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 344455678888999999999999998862 57888888888754 2 1222368999999999999998765 779
Q ss_pred CCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCC
Q 007595 190 DDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALD-TM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267 (597)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~ 267 (597)
||++|+++.+. +.+..+++||+||.++++++|+.|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998542 2234579999999999999999999 89 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhc---CC--CeEEEEecCCC-ccccccccCcccHHHHhcccCC
Q 007595 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEA---GP--LKAVVLPVIGD-DVGIQLRQQDVSWKDFLSCVDY 341 (597)
Q Consensus 268 ~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (597)
+.+++.++++++++++||+++...+.++..+....+.+. ++ ..++++...+. .... ......+|+++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC
Confidence 999999999999999999998876655555544333332 22 23444432211 0000 11234567777654322
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHH-HHhhhcCCCCCCEEEEecCchhhhhH-HHHHHHH
Q 007595 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA-EAWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSF 419 (597)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L 419 (597)
..+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|+.+. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345679999999999999999999999999876554 44456889999999999999999998 6789999
Q ss_pred HhCCeEEeeCCC---CChhhHHHHHHHcCCeEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeeCCCCCcchHHHHHHh
Q 007595 420 LSGAALALYHGS---PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNC--LQGLDWTKIRSFASTGETSNVDDDLWLASK 494 (597)
Q Consensus 420 ~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 494 (597)
++|++++++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 478899999999999999999999999987654 345678999999999999999999999887
Q ss_pred cC--CCCeecccCcccccccccccCC--CCCCCcCccCCCCCCcEEEEEcC-CCCcCCC-CCCceeeEEEecccCCCchh
Q 007595 495 AY--YKPIIECCGGTELASSYIQGSM--LQPQAFGAFSTATMTTGFVILDE-LGVPYPD-DQPCVGEVGLFPLYLGATDR 568 (597)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~IlD~-~~~~vp~-G~~giGel~v~~gy~~~~~~ 568 (597)
++ +++++|.||+||+++.++.... ..+.+.+++|+|++|++++|+|+ +|+++|. |+ +|||+|...+.+...+
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~--~Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC--EEEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc--ceEEEEecCCCchhcc
Confidence 64 3789999999999865554432 23456789999999999999998 9999998 88 5999993322333344
Q ss_pred hhcc
Q 007595 569 LLNA 572 (597)
Q Consensus 569 ~~~~ 572 (597)
||++
T Consensus 486 y~~~ 489 (663)
T 1ry2_A 486 IWKN 489 (663)
T ss_dssp ETTC
T ss_pred cccC
Confidence 4444
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2e-60 Score=530.59 Aligned_cols=438 Identities=24% Similarity=0.375 Sum_probs=347.0
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHcCceeeccccccccCCCC-CCCCCCcCCCCcchHhhhhccCccccCCCCCceEEEEec
Q 007595 121 FSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKCILDRTDK-SKHGGTWLPGSVLNVAECCLLPSSRLRKEDDSVAVVWRE 199 (597)
Q Consensus 121 ~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~ 199 (597)
|..+.+++++++..||..+++. +.|.+++..+++.... ..+...|++++.+|...+++++++ +++||++|+++.+
T Consensus 24 y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~ 99 (652)
T 1pg4_A 24 YETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWEG 99 (652)
T ss_dssp HHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEEC
T ss_pred HHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEEc
Confidence 4667789999999999999886 5677877777754321 133558999999999999988765 6789999999854
Q ss_pred cCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHh
Q 007595 200 DRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (597)
Q Consensus 200 ~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~~~~~l~~~l~~ 278 (597)
. +.+..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+|+|++++|++|.++.+++.+++++
T Consensus 100 ~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~ 177 (652)
T 1pg4_A 100 D--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIID 177 (652)
T ss_dssp S--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHH
T ss_pred C--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHh
Confidence 2 223457999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEEccceeccCccccchhhHH---hcCC----CeEEEEecCCCccccccccCcccHHHHhcccCCCCCCCCCCCc
Q 007595 279 SKAKGIFTQDFILRGGRKFPLYSKVA---EAGP----LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPV 351 (597)
Q Consensus 279 ~~~~~vl~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (597)
+++++||+++...+.++..+....+. ...+ ..++++...+..... .......|++++..... .....
T Consensus 178 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~ 251 (652)
T 1pg4_A 178 SSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQPE 251 (652)
T ss_dssp HTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCCC
T ss_pred cCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCcc
Confidence 99999999988765555444433332 2221 234444322111000 01123567777654322 11223
Q ss_pred cCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHH-HHhhhcCCCCCCEEEEecCchhhhhH-HHHHHHHHhCCeEEeeC
Q 007595 352 YRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA-EAWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSGAALALYH 429 (597)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~ 429 (597)
...++|++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|+.+. +.++.+|++|+++++++
T Consensus 252 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred ccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 45679999999999999999999999999876653 44556889999999999999999998 67899999999999997
Q ss_pred CC---CChhhHHHHHHHcCCeEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeeCCCCCcchHHHHHHhcC--CCCeec
Q 007595 430 GS---PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNC--LQGLDWTKIRSFASTGETSNVDDDLWLASKAY--YKPIIE 502 (597)
Q Consensus 430 ~~---~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~--~~~l~n 502 (597)
+. .++..+++.|+++++|+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ +++++|
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 411 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEc
Confidence 53 478899999999999999999999999987654 34567899999999999999999999988764 378999
Q ss_pred ccCcccccccccccCC-CCCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEEecccCCCchhhhcc
Q 007595 503 CCGGTELASSYIQGSM-LQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNA 572 (597)
Q Consensus 503 ~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v~~gy~~~~~~~~~~ 572 (597)
.||+||+++.++.... ..+.+.+++|+|++|++++|+|++|+++|.|+ +|||+|...+.+...+||++
T Consensus 412 ~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~--~GEl~i~g~~p~~~~gY~~~ 480 (652)
T 1pg4_A 412 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLFGD 480 (652)
T ss_dssp EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEETTC
T ss_pred cccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCc--eEEEEEccCCCchhhhhcCC
Confidence 9999999875554432 23456789999999999999999999999998 59999943223334444444
No 4
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6e-56 Score=490.76 Aligned_cols=336 Identities=17% Similarity=0.119 Sum_probs=278.4
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++|||+
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 5689999999998775 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
||.+|.+++.++++++++++++++......... . ... .+.... .
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~----------~--~~~------------------~~~~~~---~--- 151 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANG----------L--PCV------------------PVRHLP---A--- 151 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT----------S--CEE------------------EGGGCC---C---
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccC----------C--cee------------------eeccCC---c---
Confidence 999999999999999999999976542110000 0 000 000000 0
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCC
Q 007595 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGA 423 (597)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~ 423 (597)
...........++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+++++|.+|++|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 00111222346799999999999999999999999999877655 45678999999999999999999999999999999
Q ss_pred eEEeeCC-CCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCeec
Q 007595 424 ALALYHG-SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIE 502 (597)
Q Consensus 424 ~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (597)
++++.+. ..++..+.+.|+++++|++.++|++++.|.+.. ..++++||.+++|||+++++..+++...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 9999753 468899999999999999999999999998653 335789999999999999998888887878889999
Q ss_pred ccCcccccccccccCC---CCCCCcCccCCCCCCcEEEEEcCCCCc-CCCCCCceeeEEE-----ecccCCCchhhh
Q 007595 503 CCGGTELASSYIQGSM---LQPQAFGAFSTATMTTGFVILDELGVP-YPDDQPCVGEVGL-----FPLYLGATDRLL 570 (597)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~IlD~~~~~-vp~G~~giGel~v-----~~gy~~~~~~~~ 570 (597)
.||+||+++.++.... .......++|+|++|++++|+|+++++ +|+|++ |||+| ++||+++++.+.
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~~p~~t~ 382 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRNDAARTR 382 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETTCHHHHH
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCCChhhhh
Confidence 9999999875443222 123345799999999999999999988 789994 99999 677777766553
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.8e-55 Score=480.70 Aligned_cols=394 Identities=16% Similarity=0.153 Sum_probs=309.1
Q ss_pred CcCCCCcchHhhhhccCccccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCH
Q 007595 166 TWLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTV 244 (597)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~ 244 (597)
.|......|....++++++ +.+||++|+++.+. .+..+++||+||+++++++|++|+++ |++||+|+|+++|++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~ 122 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY 122 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT
T ss_pred CCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 4666666777777777655 78999999998543 23457999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCC---CeEEEEecCCCcc
Q 007595 245 HAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGP---LKAVVLPVIGDDV 321 (597)
Q Consensus 245 e~i~a~LA~~k~Ga~~vpl~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~ 321 (597)
++++++|||+|+|++++|++|.++.+++.+++++++++++|++.+.. ....+..+...++ ...+.+...
T Consensus 123 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (580)
T 3etc_A 123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD---- 194 (580)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS----
T ss_pred HHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc----
Confidence 99999999999999999999999999999999999999999987521 0012222322222 233333211
Q ss_pred ccccccCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEE
Q 007595 322 GIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYC 401 (597)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l 401 (597)
...+..++.+.+...... ...........++|++||+|||||||+||||+++|++++..+.......++.++++++
T Consensus 195 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (580)
T 3etc_A 195 ---VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHY 270 (580)
T ss_dssp ---CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEE
T ss_pred ---cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEE
Confidence 112445666665544320 0001111245789999999999999999999999999888777766678899999999
Q ss_pred EecCchhhhhHHH-HHHHHHhCCeEEeeC-CCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEee
Q 007595 402 WPTNLGWVMGPII-LFSSFLSGAALALYH-GSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFAST 479 (597)
Q Consensus 402 ~~~~~~~~~~~~~-i~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~g 479 (597)
+.++++|+.+.+. ++.++..|+++++.+ ..+++..+++.|+++++|++.++|++++.|.+.. ....++++||.+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~g 349 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVA 349 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEEC
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEc
Confidence 9999999999875 788999999999985 4678999999999999999999999999998763 445678999999999
Q ss_pred CCCCCcchHHHHHHhcCCCCeecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEEe
Q 007595 480 GETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLF 559 (597)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v~ 559 (597)
||++++++.+++.+.+ +++++|.||+||+++.++. ........+++|+|++|++++|+|++|+++|+|+. |||+|.
T Consensus 350 Ge~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~-~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~ 425 (580)
T 3etc_A 350 GEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIAT-FPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVIN 425 (580)
T ss_dssp SSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEEC-CTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEE
T ss_pred cCCCCHHHHHHHHHHh-CCeEecccccccccceeec-CCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEe
Confidence 9999999999988776 5899999999999865433 33345567899999999999999999999999995 999993
Q ss_pred ----------cccCCCchhhhccccccccccc
Q 007595 560 ----------PLYLGATDRLLNADHEEVYFSG 581 (597)
Q Consensus 560 ----------~gy~~~~~~~~~~~~~~~~~~~ 581 (597)
.||+++++.+.....+.+|.+|
T Consensus 426 ~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TG 457 (580)
T 3etc_A 426 TMEGKPVGLFVHYGKDPERTEETWHDGYYHTG 457 (580)
T ss_dssp CTTCCCTTCCCEETTCHHHHHHHEETTEEEEE
T ss_pred cCCCCCCeeeccccCCHhHHHhhcCCCEEecC
Confidence 3567766655443333333333
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.1e-54 Score=470.84 Aligned_cols=361 Identities=19% Similarity=0.227 Sum_probs=296.1
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 45789999999986321 4899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
+|.++.+++.+++++++++++|++.... ..+..........++++... ..+...++++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987532 22222222222233332211 1233456665543322
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhh----hcCCCCCCEEEEecCchhhhhHH-HHHHH
Q 007595 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG----HIDMKVGDVYCWPTNLGWVMGPI-ILFSS 418 (597)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~~-~i~~~ 418 (597)
..+.....++++|||+|||||||+||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++. .++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 11233457899999999999999999999999999887766543 45688999999999999999984 47889
Q ss_pred HHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCC
Q 007595 419 FLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK 498 (597)
Q Consensus 419 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (597)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999986 57889999999999999999999999999988766677899999999999999999999999998889
Q ss_pred CeecccCcccccccccccC----CCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEE-----ecccCCCchh
Q 007595 499 PIIECCGGTELASSYIQGS----MLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDR 568 (597)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v-----~~gy~~~~~~ 568 (597)
+++|.||+||++...+.+. .......+++|+|++|++++|+| ++|+++|.|++ |||+| +.||+++++.
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~p~~ 402 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEA 402 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTCHHH
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcCChhH
Confidence 9999999999986544332 12234567999999999999999 67999999995 99999 6889888877
Q ss_pred hhccc
Q 007595 569 LLNAD 573 (597)
Q Consensus 569 ~~~~~ 573 (597)
+....
T Consensus 403 t~~~~ 407 (536)
T 3ni2_A 403 TSRTI 407 (536)
T ss_dssp HHHHB
T ss_pred HHhhc
Confidence 65444
No 7
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.4e-54 Score=501.44 Aligned_cols=428 Identities=16% Similarity=0.165 Sum_probs=302.4
Q ss_pred CCCCCCCHHHHHHHHhhCHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcCCCCcchHhhhhccCccccCCCCCce
Q 007595 114 YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKCILDRTDKSKHGGTWLPGSVLNVAECCLLPSSRLRKEDDSV 193 (597)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (597)
|++ +++++.||++|..++..+++.+...+........-... ..........+..+ .+.. +++++||++
T Consensus 11 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl~~-~l~~--~a~~~pd~~ 78 (979)
T 3tsy_A 11 SSG-----LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSLHD-YIFQ--NISEFATKP 78 (979)
T ss_dssp ---------------------------------------CCCBCCS----SCCCCCCTTSCHHH-HHTT--TGGGTTTSE
T ss_pred ccC-----cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCHHH-HHHH--HHHhCCCCe
Confidence 777 99999999999999999988875444433222211110 00111111122222 2222 458899999
Q ss_pred EEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHH
Q 007595 194 AVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREI 272 (597)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~~~~~l 272 (597)
|+++...+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|+++||++|.++.+++
T Consensus 79 Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l 152 (979)
T 3tsy_A 79 CLINGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152 (979)
T ss_dssp EEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHH
T ss_pred EEEECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHH
Confidence 99986321 4899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCCCCCCCCCcc
Q 007595 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVY 352 (597)
Q Consensus 273 ~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (597)
.++++++++++||++..+. +.+..+.......++.+.... ......+...+.++...... .....+...
T Consensus 153 ~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 221 (979)
T 3tsy_A 153 AKQAKASNTKLIITEARYV------DKIKPLQNDDGVVIVCIDDNE---SVPIPEGCLRFTELTQSTTE--ASEVIDSVE 221 (979)
T ss_dssp HHHHHHHTEEEEEECSTTT------TTSHHHHHTSCCEEEECCCCT---TSCCCTTEEEGGGTSSCCSG--GGGGSCCSC
T ss_pred HHHHHHcCCeEEEEChHHH------HHHHHHhhcCCceEEEeCCcc---cccCCcccccHHHHhhcccc--ccccCCcCC
Confidence 9999999999999997642 233333333322333322111 11112233445555433221 001122334
Q ss_pred CCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhh----hcCCCCCCEEEEecCchhhhhHH-HHHHHHHhCCeEEe
Q 007595 353 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG----HIDMKVGDVYCWPTNLGWVMGPI-ILFSSFLSGAALAL 427 (597)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~~-~i~~~L~~G~~lvl 427 (597)
..++|++||+|||||||+||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++. .++.+|..|+++++
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 67899999999999999999999999999887766543 45688999999999999999985 47888999999999
Q ss_pred eCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCeecccCcc
Q 007595 428 YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGT 507 (597)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (597)
.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+++++++|.||+|
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~T 380 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMT 380 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECG
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechh
Confidence 86 56889999999999999999999999999988766677899999999999999999999999998889999999999
Q ss_pred cccccccccC----CCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEE-----ecccCCCchhhhccc
Q 007595 508 ELASSYIQGS----MLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNAD 573 (597)
Q Consensus 508 E~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~~ 573 (597)
|++..++... .......+++|+|++|++++|+| ++|+++|+|++ |||+| ++||+++++.+....
T Consensus 381 E~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~~p~~t~~~f 454 (979)
T 3tsy_A 381 EAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAATAETI 454 (979)
T ss_dssp GGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETTCHHHHHHHB
T ss_pred hhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccCChhhhhhhc
Confidence 9986543321 12234567999999999999999 66999999995 99999 678888887665443
No 8
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.8e-54 Score=470.09 Aligned_cols=363 Identities=15% Similarity=0.112 Sum_probs=297.4
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|+++||+
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEcc
Confidence 457899999999887322233446999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
+|.++.+++.+++++++++++|++.... +.+..+........+++.. ....++.++......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-- 169 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSE-- 169 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCS--
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcc--
Confidence 9999999999999999999999987532 2223333333322222221 123456666654432
Q ss_pred CCCCCCCccCC-CCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhC
Q 007595 344 GPKYYPPVYRP-VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSG 422 (597)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G 422 (597)
........ ++++|||+|||||||+||||+++|+++.+.+.+....+++.++|++++.+|++|+.++..++.++..|
T Consensus 170 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 170 ---DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ---CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ---ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcC
Confidence 11122223 48999999999999999999999999999998888889999999999999999999987788899999
Q ss_pred CeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCC--CCCCCccEEEeeCCCCCcchHHHHHHh----cC
Q 007595 423 AALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASK----AY 496 (597)
Q Consensus 423 ~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~--~~l~sLr~v~~gGe~l~~~~~~~~~~~----~~ 496 (597)
+++++.+ ..++..+++.|+++++|++.++|++++.|.+...... .++++||.+++|||++++++.+++.+. ++
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 9999987 5788999999999999999999999999987644333 578999999999999999998888776 33
Q ss_pred --CCCeecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEE-----ecccCCCchh
Q 007595 497 --YKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDR 568 (597)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v-----~~gy~~~~~~ 568 (597)
.++++|.||+||+++.++...........++|+|++|++++|+| ++|+++|+|+. |||+| +.||+++++.
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~ 403 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKE 403 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETTCTTG
T ss_pred CccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCCChhh
Confidence 37899999999998765555444445678999999999999999 89999999995 99999 6788887776
Q ss_pred hhc
Q 007595 569 LLN 571 (597)
Q Consensus 569 ~~~ 571 (597)
+..
T Consensus 404 t~~ 406 (549)
T 3g7s_A 404 NQE 406 (549)
T ss_dssp GGT
T ss_pred hhh
Confidence 543
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=9.6e-54 Score=467.14 Aligned_cols=360 Identities=15% Similarity=0.119 Sum_probs=287.1
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||+
T Consensus 34 ~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecC
Confidence 3478999999998664 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCC-eEEEEecCCCccccccccCcccHHHHhcccCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL-KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (597)
+|.++.+++.+++++++++++|+++.... .........+....+. ..+++.... ..+.++......
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~- 172 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE- 172 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC-
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc-
Confidence 99999999999999999999999875310 0000112223232322 122221110 012222211111
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHH--HHHHHHH
Q 007595 343 PGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPI--ILFSSFL 420 (597)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~i~~~L~ 420 (597)
........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+.++. .++.+|+
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 248 (539)
T 1mdb_A 173 ----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (539)
T ss_dssp ----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ----ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHH
Confidence 1112345679999999999999999999999999999888888888999999999999999999885 5889999
Q ss_pred hCCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCe
Q 007595 421 SGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPI 500 (597)
Q Consensus 421 ~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (597)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 249 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~ 326 (539)
T 1mdb_A 249 AGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTL 326 (539)
T ss_dssp TTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEE
T ss_pred hCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999986 47889999999999999999999999999876555566789999999999999999999888776 5889
Q ss_pred ecccCcccccccccccCCCCCCCcCccCCCCCCc-EEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhhccc
Q 007595 501 IECCGGTELASSYIQGSMLQPQAFGAFSTATMTT-GFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNAD 573 (597)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~~ 573 (597)
+|.||+||+++.++..........+++|+|+++. +++|+|++|+++|+|+. |||+| +.||+++++.+....
T Consensus 327 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~~f 403 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYKAEEHNAASF 403 (539)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTTCHHHHHHHB
T ss_pred EEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcCChhhhhhhc
Confidence 9999999976543322111122346899999764 89999999999999994 99999 678888877654433
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.3e-53 Score=464.60 Aligned_cols=364 Identities=16% Similarity=0.156 Sum_probs=290.9
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 4578999999998765 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCC-eEEEEecCCCccccccccCcccHHHHhcccCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL-KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (597)
+|.++.+++.+++++++++++|++..... .........+...... ..+++.... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEV-FSNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGG-GSSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEcccccc-ccHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 99999999999999999999999875321 0011122223332222 222221111 011234444433222
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHH--HHHHHHH
Q 007595 343 PGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPI--ILFSSFL 420 (597)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~i~~~L~ 420 (597)
.........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..+.. .++.+|.
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11112345679999999999999999999999999999999888889999999999999998887764 5889999
Q ss_pred hCCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCe
Q 007595 421 SGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPI 500 (597)
Q Consensus 421 ~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (597)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 46889999999999999999999999999877555555688999999999999999999988876 5899
Q ss_pred ecccCcccccccccccCCCCCCCcCccCCCC-CCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhhccc
Q 007595 501 IECCGGTELASSYIQGSMLQPQAFGAFSTAT-MTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNAD 573 (597)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~~ 573 (597)
+|.||+||+++.++...........++|+|+ ++++++|+|++++++|+|+ +|||+| +.||+++++.+....
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY~~~~~~t~~~f 412 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGE--IGMLATRGPYTFCGYYQSPEHNSQVF 412 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSCCTTCHHHHHHHB
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCC--eeEEEEecCCcchhhcCChhhhhhhC
Confidence 9999999987644333222223446899997 8999999999999999999 499999 678888877665444
No 11
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=8.7e-54 Score=465.07 Aligned_cols=360 Identities=21% Similarity=0.183 Sum_probs=290.7
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++.+||++|+++.+. .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||+
T Consensus 25 ~a~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPST------DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGG------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCc------CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 4578999999998643 24899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCC--eEEEEecCCCccccccccCcccHHHHhcccCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL--KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (597)
+|.++.+++.+++++++++++|++.... +....+...... ..+.+. ....+.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc
Confidence 9999999999999999999999987532 222222222111 011110 01223444333222
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHh
Q 007595 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLS 421 (597)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~ 421 (597)
..+.....+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 122334578999999999999999999999999999999888888999999999999999999999876666679
Q ss_pred CCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCee
Q 007595 422 GAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPII 501 (597)
Q Consensus 422 G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (597)
|+++++.+ .+++..+++.++++++|++.++|++++.|.+.......++++||.+++|||++++++.+++... +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999986 5789999999999999999999999999988765555678999999999999999999888776 68999
Q ss_pred cccCcccccccccccCCC-CCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhhccccc
Q 007595 502 ECCGGTELASSYIQGSML-QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHE 575 (597)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~~~~ 575 (597)
|.||+||+++..+..... .....+++|+|+++++++|+|++|+++|.|. |||+| +.||+++++.+......
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~---GEl~v~g~~v~~GY~~~p~~t~~~f~~ 389 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE---GEVVIKSDILLKEYWNRPEATRDAFDN 389 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSEE---EEEEEEETTSCSEETTCHHHHHHTEET
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCCC---eEEEEeCcchhhhhCCChhhhHhhhcC
Confidence 999999998654433332 2456689999999999999999999999883 99999 68899888876554433
Q ss_pred cccc
Q 007595 576 EVYF 579 (597)
Q Consensus 576 ~~~~ 579 (597)
.+|.
T Consensus 390 g~~~ 393 (517)
T 3r44_A 390 GWFR 393 (517)
T ss_dssp TEEE
T ss_pred CCEe
Confidence 3333
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=6.9e-53 Score=456.47 Aligned_cols=356 Identities=18% Similarity=0.167 Sum_probs=286.2
Q ss_pred cCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecC
Q 007595 186 LRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA 264 (597)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~ 264 (597)
++++|+++|+.....+ .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|++
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 4778888888753210 14899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCCC
Q 007595 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPG 344 (597)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (597)
|.++.+++.+++++++++++|++.... .....+.......+..+... ....+.+.......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--- 145 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGASE--- 145 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSCS---
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhcCCC---
Confidence 999999999999999999999987542 22233322222222222111 11122222221111
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHH-HHHHHHHhCC
Q 007595 345 PKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPI-ILFSSFLSGA 423 (597)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~i~~~L~~G~ 423 (597)
........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+++ .++.+++.|+
T Consensus 146 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 146 --AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp --CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred --CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1223345679999999999999999999999999999998888889999999999999999998874 4678899999
Q ss_pred eEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCeecc
Q 007595 424 ALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIEC 503 (597)
Q Consensus 424 ~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (597)
++++.+ .+++..+++.++ ++|++.++|+++..|++.......++++||.+++|||++++++.+++...+ +++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccce
Confidence 999987 578899999987 899999999999999988766667789999999999999999999888776 4789999
Q ss_pred cCcccccccccccCCCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEE-----ecccCCCchhhhcccc
Q 007595 504 CGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADH 574 (597)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~~~ 574 (597)
||+||+++.. ..........+++|+|++|++++|+| ++|+++|+|+. |||+| +.||+++++.+.....
T Consensus 300 YG~TE~~~~~-~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~~f~ 373 (503)
T 4fuq_A 300 YGMTETNMNT-SNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWRMPEKTKSEFR 373 (503)
T ss_dssp CEETTTEECB-CCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTTCHHHHHHTBC
T ss_pred EcccccCccc-ccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcCChhhhHhhhC
Confidence 9999998753 33333445567899999999999999 88999999994 99999 6788888776654443
No 13
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4e-53 Score=469.51 Aligned_cols=357 Identities=16% Similarity=0.151 Sum_probs=284.4
Q ss_pred CCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCC
Q 007595 190 DDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFA 268 (597)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~~ 268 (597)
||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|+++||++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999998765 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCC-eEEEEecCCCccccccccCcccHHHHhcccCCCCCCCC
Q 007595 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL-KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKY 347 (597)
Q Consensus 269 ~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (597)
.+++.++++++++++++++...... ........+...... ..+.+... .....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALF-SGDDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEeccccccc-ccHHHHHHHhhcCCccceeeeccc---------ccccchhhhhccccc-----c
Confidence 9999999999999999998753210 000112222222222 22222111 112234444433221 1
Q ss_pred CCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhH--HHHHHHHHhCCeE
Q 007595 348 YPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGP--IILFSSFLSGAAL 425 (597)
Q Consensus 348 ~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~i~~~L~~G~~l 425 (597)
.......++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++. ++++.+|++|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 12234567999999999999999999999999999999988888999999999999998776665 4689999999999
Q ss_pred EeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCcc--CCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCeecc
Q 007595 426 ALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCL--QGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIEC 503 (597)
Q Consensus 426 vl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (597)
++.+ ..++..+++.++++++|++.++|+++..|.+.... ...++++||.+++|||++++++.+++...+ +++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9986 46788899999999999999999999998765332 233689999999999999999999888776 5899999
Q ss_pred cCcccccccccccCCCCCCCcCccCCCC-CCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhhccc
Q 007595 504 CGGTELASSYIQGSMLQPQAFGAFSTAT-MTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNAD 573 (597)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~~ 573 (597)
||+||+++.++...........++|+|+ ++++++|+|++|+++|.|++ |||+| ++||+++++.+...+
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~~p~~t~~~f 407 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYKSPQHNASAF 407 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTTCHHHHHHHB
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcCChhhhhhcc
Confidence 9999998654433222222345899998 78899999999999999995 99999 677777766654433
No 14
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.4e-53 Score=468.99 Aligned_cols=338 Identities=18% Similarity=0.167 Sum_probs=279.2
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|+++||+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEc
Confidence 4578999999998765 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
+|.++.+++.+++++++++++|++...... ......++.... .....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~----------------~~~~~---- 202 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGR-------------LTGTTTLYVEDE----------------AASDA---- 202 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------------SCSSEEEECCC--------------------------
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhhhc-------------ccCCcceeeecc----------------ccccc----
Confidence 999999999999999999999998753211 111111110000 00000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCC
Q 007595 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGA 423 (597)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~ 423 (597)
..........++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++.+|+.|+
T Consensus 203 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 203 -PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred -cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCC
Confidence 0111223456899999999999999999999999998776554 35567889999999999999999888999999999
Q ss_pred eEEeeCC-CCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCeec
Q 007595 424 ALALYHG-SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIE 502 (597)
Q Consensus 424 ~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (597)
++++.+. ..++..+++.|+++++|++.++|++++.|.+... .++++||.+++|||+++++..+++.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE
Confidence 9999864 4688899999999999999999999999987543 34789999999999999999888888888889999
Q ss_pred ccCcccccccccccCC---CCCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhh
Q 007595 503 CCGGTELASSYIQGSM---LQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLL 570 (597)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~ 570 (597)
.||+||+++..+.... .......++|+|++|++++|+|++++++|.|+ +|||+| +.||+++++.+.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~--~GEl~v~g~~v~~GY~~~~~~t~ 431 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGA--LGELYVAGAGLAHGYVSRPALTA 431 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEETTCHHHHH
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCC--cEEEEEeecccchhcCCCchhhh
Confidence 9999999865443222 12334568999999999999999999999999 599999 677887766553
No 15
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.9e-53 Score=464.65 Aligned_cols=368 Identities=16% Similarity=0.133 Sum_probs=289.3
Q ss_pred cCCCCCceEEE---EeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Q 007595 186 LRKEDDSVAVV---WREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVV 261 (597)
Q Consensus 186 a~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~v 261 (597)
++++||++|++ +... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++
T Consensus 30 a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 103 (550)
T 3rix_A 30 MKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103 (550)
T ss_dssp HHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEE
T ss_pred HHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEe
Confidence 46788888875 3211 25899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCC
Q 007595 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (597)
Q Consensus 262 pl~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (597)
|++|.++.+++.+++++++++++|++.+.. +....+....+....++...... ...+..++.++......
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 173 (550)
T 3rix_A 104 PANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKT----DYQGFQSMYTFVTSHLP 173 (550)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSS----CBTTBCBHHHHHHHHCC
T ss_pred ecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCc----cccCcccHHHHhhcccc
Confidence 999999999999999999999999987532 22333333333322222211110 11234456666544322
Q ss_pred CCC-CCC-CCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhh---cCCCCCCEEEEecCchhhhhHHHHH
Q 007595 342 HPG-PKY-YPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH---IDMKVGDVYCWPTNLGWVMGPIILF 416 (597)
Q Consensus 342 ~~~-~~~-~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~i~ 416 (597)
... ... .+.....++++|||+|||||||+||||+++|+++.+.+.+.... +++.++|++++.+|++|+.+++.++
T Consensus 174 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~ 253 (550)
T 3rix_A 174 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL 253 (550)
T ss_dssp TTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHH
T ss_pred ccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHH
Confidence 100 001 11122345789999999999999999999999998887766554 5788999999999999999998889
Q ss_pred HHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcC
Q 007595 417 SSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAY 496 (597)
Q Consensus 417 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 496 (597)
.+++.|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+.++
T Consensus 254 ~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~ 332 (550)
T 3rix_A 254 GYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFH 332 (550)
T ss_dssp HHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTT
T ss_pred HHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcC
Confidence 9999999999986 578899999999999999999999999999887666778999999999999999999999998876
Q ss_pred CCCeecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEE-----ecccCCCchhhh
Q 007595 497 YKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDRLL 570 (597)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~ 570 (597)
...++|.||+||+++.++.. .......+++|+|+++++++|+| ++|+++|+|+. |||+| +.||+++++.+.
T Consensus 333 ~~~v~~~YG~TE~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~ 409 (550)
T 3rix_A 333 LPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATN 409 (550)
T ss_dssp CSCCEEEEECGGGSSEEEEC-CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTCHHHHH
T ss_pred CCccccccCcCccccceecC-CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcCChhhhh
Confidence 44699999999998754443 33445678999999999999999 67999999995 99999 678888887664
Q ss_pred ccc
Q 007595 571 NAD 573 (597)
Q Consensus 571 ~~~ 573 (597)
...
T Consensus 410 ~~~ 412 (550)
T 3rix_A 410 ALI 412 (550)
T ss_dssp HHB
T ss_pred hhc
Confidence 433
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=5.2e-53 Score=458.59 Aligned_cols=345 Identities=18% Similarity=0.184 Sum_probs=291.7
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh--cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEe
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM--FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVS 262 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vp 262 (597)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 4588999999998765 999999999999999999885 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCC
Q 007595 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (597)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (597)
++|.++.+++.+++++++++++|++..... .. .. .......++++......
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~-----~~-------~~----------------~~~~~~~~~~~~~~~~~- 132 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSI-----DA-------VG----------------QQIQTVSAEELLENEGG- 132 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCT-----TC-------CC----------------CSSCEEEHHHHHTSCSC-
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccc-----hh-------cc----------------cccceecHhhhhccccC-
Confidence 999999999999999999999999764210 00 00 00112344555443322
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhC
Q 007595 343 PGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSG 422 (597)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G 422 (597)
.........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|
T Consensus 133 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 209 (511)
T 3e7w_A 133 ---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSG 209 (511)
T ss_dssp ---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTT
T ss_pred ---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcC
Confidence 11122345678999999999999999999999999999998888889999999999999999999998899999999
Q ss_pred CeEEeeCCC--CChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCe
Q 007595 423 AALALYHGS--PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPI 500 (597)
Q Consensus 423 ~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (597)
+++++.+.. .++..+++.++++++|++.++|++++.++........+++++|.+++|||++++++.+++.+.++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i 289 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKI 289 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEE
Confidence 999998642 478899999999999999999999999998776666778999999999999999999999999888999
Q ss_pred ecccCcccccccccccCCC----CCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhhc
Q 007595 501 IECCGGTELASSYIQGSML----QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLN 571 (597)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~ 571 (597)
+|.||+||+++.++..... ......++|+|++|++++|+|++|+++|+|++ |||+| +.||+++++.+..
T Consensus 290 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~ 367 (511)
T 3e7w_A 290 FNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLGEPELTEK 367 (511)
T ss_dssp EECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTTCHHHHHH
T ss_pred EeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCCCcccchh
Confidence 9999999998754433221 22345689999999999999999999999995 99999 6789888776643
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.4e-53 Score=463.38 Aligned_cols=347 Identities=18% Similarity=0.228 Sum_probs=287.2
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 10 ~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl 81 (512)
T 3fce_A 10 WAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPV 81 (512)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 3478999999998765 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
+|.++.+++.+++++++++++|++....... ... .++. ...+.++......
T Consensus 82 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~~--~~~~-------------~~~~~~~~~~~~~-- 132 (512)
T 3fce_A 82 DLSIPADRVQRIAENSGAKLLLSATAVTVTD------------LPV--RIVS-------------EDNLKDIFFTHKG-- 132 (512)
T ss_dssp ETTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CSS--EEEE-------------THHHHHHHHHTTT--
T ss_pred CCCCcHHHHHHHHHhcCCCEEEecCcccccc------------ccc--ceec-------------hhhhhhhcccccc--
Confidence 9999999999999999999999985421100 000 0110 0112222221111
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCC
Q 007595 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGA 423 (597)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~ 423 (597)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|+
T Consensus 133 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 211 (512)
T 3fce_A 133 -NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGG 211 (512)
T ss_dssp -CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTC
T ss_pred -cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCC
Confidence 0111223456799999999999999999999999999999988888899999999999999999999988999999999
Q ss_pred eEEeeCCC--CChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCee
Q 007595 424 ALALYHGS--PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPII 501 (597)
Q Consensus 424 ~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (597)
++++.+.. .++..+++.++++++|++.++|+++..++........++++||.+++|||++++++.+++.+.+++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~ 291 (512)
T 3fce_A 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIM 291 (512)
T ss_dssp EEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred EEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEE
Confidence 99998742 4788999999999999999999999999887766677789999999999999999999999998888999
Q ss_pred cccCcccccccccccCCC----CCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhhc
Q 007595 502 ECCGGTELASSYIQGSML----QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLN 571 (597)
Q Consensus 502 n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~ 571 (597)
|.||+||+++.++..... ......++|+|+++++++|+|++|+++|+|+. |||+| +.||+++++.+..
T Consensus 292 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~ 368 (512)
T 3fce_A 292 NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLGSPELTEK 368 (512)
T ss_dssp EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTTCHHHHHH
T ss_pred eCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcCCchhhhh
Confidence 999999998754433221 12345789999999999999999999999994 99999 6889988876644
No 18
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.1e-52 Score=459.03 Aligned_cols=362 Identities=18% Similarity=0.162 Sum_probs=287.2
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++.+||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 27 ~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 27 AAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp HHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEec
Confidence 3478999999996321 1235899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
+|.++.+++.+++++++++++|++..+. +.+..+....+....++...... ..+...++++......
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-- 169 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-----PEGYLAYEEALGEEAD-- 169 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-----CTTCEEHHHHCCSCCC--
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-----CcccccHHHHhhccCC--
Confidence 9999999999999999999999987532 22223333333221122111110 0123456665543221
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH--hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHh
Q 007595 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA--WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLS 421 (597)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~ 421 (597)
.....+++++||+|||||||+||||+++|+++++..... ...++++++|++++.+|++|+.++..++.+++.
T Consensus 170 ------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~ 243 (541)
T 1v25_A 170 ------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLV 243 (541)
T ss_dssp ------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHH
T ss_pred ------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhc
Confidence 123457899999999999999999999999998766552 245678899999999999999998778889999
Q ss_pred CCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCee
Q 007595 422 GAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPII 501 (597)
Q Consensus 422 G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (597)
|+++++.+...++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++ ..+ +++++
T Consensus 244 G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~ 321 (541)
T 1v25_A 244 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVR 321 (541)
T ss_dssp TCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEE
T ss_pred CceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCcee
Confidence 9999998755789999999999999999999999999987654445568999999999999999998888 454 68999
Q ss_pred cccCcccccccccccCCCC----------CCCcCccCCCCCCcEEEEEcCCCCcCCC-C-CCceeeEEE-----ecccCC
Q 007595 502 ECCGGTELASSYIQGSMLQ----------PQAFGAFSTATMTTGFVILDELGVPYPD-D-QPCVGEVGL-----FPLYLG 564 (597)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~IlD~~~~~vp~-G-~~giGel~v-----~~gy~~ 564 (597)
|.||+||++..++...... ....+++|+|++|++++|+|++|+++|. | + +|||+| +.||++
T Consensus 322 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~--~GEl~v~g~~v~~GY~~ 399 (541)
T 1v25_A 322 QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA--LGEVQLKGPWITGGYYG 399 (541)
T ss_dssp EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC--CEEEEEESTTSBSSCBT
T ss_pred ecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCc--ceEEEEeCcchhccccC
Confidence 9999999986544332210 0234789999999999999999999995 3 4 599999 688888
Q ss_pred Cchhhhccc
Q 007595 565 ATDRLLNAD 573 (597)
Q Consensus 565 ~~~~~~~~~ 573 (597)
+++.+....
T Consensus 400 ~p~~t~~~f 408 (541)
T 1v25_A 400 NEEATRSAL 408 (541)
T ss_dssp CHHHHHTTB
T ss_pred Chhhhhhhc
Confidence 887664443
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3e-52 Score=457.81 Aligned_cols=382 Identities=19% Similarity=0.225 Sum_probs=297.9
Q ss_pred CCCcCCCCcchHhhhhccCcc---ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh--cCCCCEEEE
Q 007595 164 GGTWLPGSVLNVAECCLLPSS---RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM--FSKGDAIAI 238 (597)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai 238 (597)
...|......|....++.+++ +++++||++|+++.+. .+..+++||+||+++++++|++|++. +++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~---~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG---KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECS---SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcC---CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 345665555666555555443 2334999999998532 11236899999999999999999985 999999999
Q ss_pred ECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCC--eEEEEec
Q 007595 239 DMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL--KAVVLPV 316 (597)
Q Consensus 239 ~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 316 (597)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.... +.+..+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 222222233332 2233321
Q ss_pred CCCccccccccCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHH--HHHHHhhhcCC
Q 007595 317 IGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIR--CAAEAWGHIDM 394 (597)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~ 394 (597)
.. ..+...+++++..... ........+++++||+|||||||+||||+++|+ ++. ..... ..+++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC
T ss_pred cC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC
Confidence 00 1123456666544332 111234567999999999999999999999999 444 34443 66788
Q ss_pred CCCCEEEEecCchhhhhHH-HHHHHHHhCCeEEeeCC-CCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCC
Q 007595 395 KVGDVYCWPTNLGWVMGPI-ILFSSFLSGAALALYHG-SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTK 472 (597)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~-~i~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~s 472 (597)
+++|++++.+|++|+.+++ .++.+|..|+++++.+. .+++..+++.|+++++|++.++|++++.|.+.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999986 68899999999999864 568899999999999999999999999998763 33456899
Q ss_pred ccEEEeeCCCCCcchHHHHHHhcCCCCeecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCc
Q 007595 473 IRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPC 552 (597)
Q Consensus 473 Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~g 552 (597)
||.+++|||++++++.+++.+.+ +++++|.||+||+++.++.. .......+++|+|++|++++|+|++|+++|.|+.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~- 400 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE- 400 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC-
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecC-cccccCCCcccccCCCceEEEECCCCCCCCCCCC-
Confidence 99999999999999999888776 57899999999998643332 2234456899999999999999999999999994
Q ss_pred eeeEEEe----------cccCCCchhhhccc
Q 007595 553 VGEVGLF----------PLYLGATDRLLNAD 573 (597)
Q Consensus 553 iGel~v~----------~gy~~~~~~~~~~~ 573 (597)
|||+|. .||+++++.+....
T Consensus 401 -GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f 430 (570)
T 3c5e_A 401 -GDIGIRVKPIRPIGIFSGYVDNPDKTAANI 430 (570)
T ss_dssp -EEEEEECSSBCCTTCCCEETTCHHHHHHTE
T ss_pred -CeeEEeccCCCCchhhccccCChhHhhhhh
Confidence 999994 46777766554433
No 20
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.1e-52 Score=455.93 Aligned_cols=357 Identities=13% Similarity=0.069 Sum_probs=285.1
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 15 NAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPV 86 (509)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEec
Confidence 4578999999998765 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
+|.++.+++.+++++++++++|++.... ...............++.... ....+.++......
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-- 149 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD-- 149 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC--
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC--
Confidence 9999999999999999999999987532 111122222222222222111 11122222221111
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCC
Q 007595 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGA 423 (597)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~ 423 (597)
.........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.|+
T Consensus 150 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g 227 (509)
T 3ivr_A 150 --TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGG 227 (509)
T ss_dssp --SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred --CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCC
Confidence 112233567899999999999999999999999999999998888899999999999999999999988777777777
Q ss_pred eEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCeecc
Q 007595 424 ALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIEC 503 (597)
Q Consensus 424 ~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (597)
+.++.. ..++..+++.|+++++|++.++|+++..|++.. ...++++||.++.||++ +..+++...+++++++|.
T Consensus 228 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 228 ASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp EEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred cEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 777766 678999999999999999999999999998765 34457899999999997 777888888878999999
Q ss_pred cCcccccccccccCCCCCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhhcccccccc
Q 007595 504 CGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEVY 578 (597)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~~~~~~~ 578 (597)
||+||+++..+..... ....++|+|++|++++|+|++|+++|+|+. |||+| +.||+++++.+.......+|
T Consensus 302 YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~ 377 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWNNAAATQHAFRNGWH 377 (509)
T ss_dssp EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETTCHHHHHHHTGGGSE
T ss_pred cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccCCHHHhHHHhhcCCc
Confidence 9999998754443322 223469999999999999999999999994 99999 68888888766544433333
No 21
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.9e-52 Score=456.14 Aligned_cols=362 Identities=17% Similarity=0.124 Sum_probs=289.4
Q ss_pred cCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecC
Q 007595 186 LRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA 264 (597)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~ 264 (597)
++++ |++|+++.+.+ +++||+||+++++++|+.|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 36 ~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 36 YAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred hccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 3567 99999974211 4899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCCC
Q 007595 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPG 344 (597)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (597)
|.++.+++.+++++++++++|++.... +.+..+.+..+....++...... ...+...|+++...... .
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~ 176 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKV----DYRGYQCLDTFIKRNTP--P 176 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSS----CBTTBCBHHHHHHHTSC--T
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCcc----cccccccHHHHHhcCcc--c
Confidence 999999999999999999999987532 12222222332111122111110 00122356666554321 0
Q ss_pred CCCCCCccC------CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhh---cCCCCCCEEEEecCchhhhhHHH-
Q 007595 345 PKYYPPVYR------PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH---IDMKVGDVYCWPTNLGWVMGPII- 414 (597)
Q Consensus 345 ~~~~~~~~~------~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~- 414 (597)
..+.... .+++++||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+.+++.
T Consensus 177 --~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 254 (548)
T 2d1s_A 177 --GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTT 254 (548)
T ss_dssp --TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred --cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHH
Confidence 0111112 23899999999999999999999999999888777665 67889999999999999999876
Q ss_pred HHHHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHh
Q 007595 415 LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASK 494 (597)
Q Consensus 415 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 494 (597)
++.++ .|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+.
T Consensus 255 ~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~ 332 (548)
T 2d1s_A 255 LGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARR 332 (548)
T ss_dssp HHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHH
Confidence 55666 999999986 5789999999999999999999999999998765555678999999999999999999999988
Q ss_pred cCCCCeecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEE-----ecccCCCchh
Q 007595 495 AYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDR 568 (597)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v-----~~gy~~~~~~ 568 (597)
+++++++|.||+||++..++. ........+++|+|+++++++|+| ++|+++|+|+. |||+| +.||+++++.
T Consensus 333 ~~~~~i~~~YG~TE~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~~~~ 409 (548)
T 2d1s_A 333 FNLPGVRQGYGLTETTSAIII-TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEA 409 (548)
T ss_dssp TTCSCCEEEEECGGGSSEEEE-CCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTCHHH
T ss_pred cCCCceeeccccccccceeee-cCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcCChHH
Confidence 877899999999999865443 222345668999999999999999 78999999994 99999 6788888776
Q ss_pred hhccc
Q 007595 569 LLNAD 573 (597)
Q Consensus 569 ~~~~~ 573 (597)
+....
T Consensus 410 t~~~f 414 (548)
T 2d1s_A 410 TKELI 414 (548)
T ss_dssp HHHHB
T ss_pred hhhcc
Confidence 54433
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.4e-52 Score=459.73 Aligned_cols=335 Identities=17% Similarity=0.165 Sum_probs=270.6
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 48 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 48 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEe
Confidence 4578999999998664 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCC--CeEEEEecCCCccccccccCcccHHHHhcccCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGP--LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (597)
+|.++.+++.+++++++++++|++..... ...... ..+..+.. . .+ .. ...
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~--~-----------~~---~~-~~~ 172 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEE--D-----------TI---KI-REG 172 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCC--S-----------TT---TT-SCC
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecc--h-----------hh---cc-ccC
Confidence 99999999999999999999999875321 111111 11111110 0 00 00 000
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHh
Q 007595 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLS 421 (597)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~ 421 (597)
........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.
T Consensus 173 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 247 (563)
T 1amu_A 173 -----TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLT 247 (563)
T ss_dssp -----SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred -----ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHC
Confidence 011123467899999999999999999999999999888888788899999999999999999999889999999
Q ss_pred CCeEEeeCCC--CChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCC
Q 007595 422 GAALALYHGS--PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKP 499 (597)
Q Consensus 422 G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (597)
|+++++.+.. .++..+++.++++++|++.++|+++..|... .+++||.+++|||++++++.+++.+. ++
T Consensus 248 G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~ 318 (563)
T 1amu_A 248 GASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VT 318 (563)
T ss_dssp TCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SE
T ss_pred CCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---Ce
Confidence 9999998642 4788999999999999999999999877532 36799999999999999998887653 68
Q ss_pred eecccCcccccccccccCCC--CCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhh
Q 007595 500 IIECCGGTELASSYIQGSML--QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLL 570 (597)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~ 570 (597)
++|.||+||++++.+..... ......++|+|++|++++|+|++|+++|.|+ +|||+| +.||+++++.+.
T Consensus 319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY~~~pe~t~ 394 (563)
T 1amu_A 319 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE--AGELCIGGEGLARGYWKRPELTS 394 (563)
T ss_dssp EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEETTCHHHHH
T ss_pred EEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCC--cEEEEEechhhChhhCCCchhhh
Confidence 99999999998654433221 2235578999999999999999999999999 599999 678888776553
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.3e-52 Score=454.86 Aligned_cols=345 Identities=15% Similarity=0.105 Sum_probs=284.0
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 13 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl 84 (521)
T 3l8c_A 13 FAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPV 84 (521)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEec
Confidence 3478999999998765 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
+|.++.+++.+++++++++++|++.+...... .. . ...+.++......
T Consensus 85 ~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~-------------~~-~----------------~~~~~~~~~~~~~-- 132 (521)
T 3l8c_A 85 DVHSAPERILAIIEIAKPSLIIAIEEFPLTIE-------------GI-S----------------LVSLSEIESAKLA-- 132 (521)
T ss_dssp ETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-------------TS-E----------------EEEHHHHHHHHHH--
T ss_pred CccccHHHHHHHHHhCCCCEEEecCccccccc-------------cC-c----------------ccchhhhhhcccc--
Confidence 99999999999999999999999875421100 00 0 0112222111100
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhh--cCCCCCCEEEEecCchhhhhHHHHHHHHHh
Q 007595 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH--IDMKVGDVYCWPTNLGWVMGPIILFSSFLS 421 (597)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~ 421 (597)
...........+++++||+|||||||+||||+++|+++.+.+.+.... +++.+++++++..|++|+.+.+.++.+++.
T Consensus 133 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 212 (521)
T 3l8c_A 133 EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLAL 212 (521)
T ss_dssp TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHT
T ss_pred cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhc
Confidence 000112234567999999999999999999999999999887776654 778899999999999999999888999999
Q ss_pred CCeEEeeCCC--CChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCC
Q 007595 422 GAALALYHGS--PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKP 499 (597)
Q Consensus 422 G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (597)
|+++++.+.. .++..+++.++++++|++.++|+++..+.........++++||.+++|||++++++.+++.+.+++++
T Consensus 213 G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 292 (521)
T 3l8c_A 213 GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAK 292 (521)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCE
T ss_pred CCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCce
Confidence 9999998643 37789999999999999999999999998876666677899999999999999999999999988899
Q ss_pred eecccCcccccccccccCCC----CCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhh
Q 007595 500 IIECCGGTELASSYIQGSML----QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLL 570 (597)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~ 570 (597)
++|.||+||+++.++..... .....+++|+|++|++++|+|++|+++|+|+. |||+| +.||+++++.+.
T Consensus 293 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~ 370 (521)
T 3l8c_A 293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLNNPEKTA 370 (521)
T ss_dssp EEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTTCHHHHH
T ss_pred EEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcCCchHhh
Confidence 99999999998754433221 12345689999999999999999999999995 99999 678988887664
Q ss_pred c
Q 007595 571 N 571 (597)
Q Consensus 571 ~ 571 (597)
.
T Consensus 371 ~ 371 (521)
T 3l8c_A 371 E 371 (521)
T ss_dssp H
T ss_pred c
Confidence 4
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=5.3e-52 Score=452.74 Aligned_cols=368 Identities=19% Similarity=0.183 Sum_probs=283.6
Q ss_pred hHhhhhccCccccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHH
Q 007595 174 NVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLA 252 (597)
Q Consensus 174 ~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA 252 (597)
|.....+..+ ++ +||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++||
T Consensus 24 ~~~~~~l~~~--~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 92 (529)
T 2v7b_A 24 NFAAYLFRLN--ET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92 (529)
T ss_dssp CHHHHHHHHT--GG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHH
T ss_pred eHHHHHHHhh--hc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 3333444433 36 999999997654 899999999999999999999 99999999999999999999999
Q ss_pred HHHcCCEEEecCCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCC---CeEEEEecCCCccccccccCc
Q 007595 253 IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGP---LKAVVLPVIGDDVGIQLRQQD 329 (597)
Q Consensus 253 ~~k~Ga~~vpl~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~ 329 (597)
|+++|++++|++|.++.+++.+++++++++++|++.... +.+....+... ..++++..... .....
T Consensus 93 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 161 (529)
T 2v7b_A 93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRLA 161 (529)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------CC
T ss_pred HHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----ccccc
Confidence 999999999999999999999999999999999987532 12222222111 22222221100 00012
Q ss_pred ccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchH-HHHHHHHhhhcCCCCCCEEEEecCchh
Q 007595 330 VSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSP-IRCAAEAWGHIDMKVGDVYCWPTNLGW 408 (597)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~~ 408 (597)
..++++...... ........++|++||+|||||||+||||+++|+++ .+........+++.++|++++.+|++|
T Consensus 162 ~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 162 PLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFF 236 (529)
T ss_dssp CBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTS
T ss_pred cchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHH
Confidence 246666543221 11223456799999999999999999999999998 555555555678899999999999999
Q ss_pred hhhHH-HHHHHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcch
Q 007595 409 VMGPI-ILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDD 487 (597)
Q Consensus 409 ~~~~~-~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~ 487 (597)
+.++. .++.+|..|+++++.+..+++..+++.|+++++|++.++|+++..|++..........+||.+++|||++++++
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~ 316 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREI 316 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHH
Confidence 99985 46789999999999865678999999999999999999999999998764333321238999999999999999
Q ss_pred HHHHHHhcCCCCeecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----eccc
Q 007595 488 DLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLY 562 (597)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy 562 (597)
.+++.+.+ +++++|.||+||++..++.... .....+++|+|++|++++|+|++|+++|.|+. |||+| +.||
T Consensus 317 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~gY 392 (529)
T 2v7b_A 317 GERFTAHF-GCEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVMY 392 (529)
T ss_dssp HHHHHHHH-SCCEEEEEECTTTSSEEEECCT-TCCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCCB
T ss_pred HHHHHHHh-CCceeeeEchhhcCceeecccc-CCCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCccccc
Confidence 99988876 5899999999999654433322 22456799999999999999999999999994 99999 6788
Q ss_pred CCCchhhhcc
Q 007595 563 LGATDRLLNA 572 (597)
Q Consensus 563 ~~~~~~~~~~ 572 (597)
+++++.+...
T Consensus 393 ~~~~~~t~~~ 402 (529)
T 2v7b_A 393 WNNREKSRAT 402 (529)
T ss_dssp TTCHHHHHHH
T ss_pred CCChHHHHHh
Confidence 8887765433
No 25
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.8e-53 Score=454.97 Aligned_cols=353 Identities=15% Similarity=0.116 Sum_probs=275.0
Q ss_pred ccCCCCCceEEEEeccC-CCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEe
Q 007595 185 RLRKEDDSVAVVWREDR-CDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVS 262 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vp 262 (597)
+++++||++|+++.+.. ..++..+++||+||.++++++|++|+++ + +||+|+|+++|++++++++|||+++|+++||
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 45789999999987621 1223446999999999999999999999 8 9999999999999999999999999999999
Q ss_pred cCC---CCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCC-----eEEEEecCCCccccccccCcccHHH
Q 007595 263 IAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL-----KAVVLPVIGDDVGIQLRQQDVSWKD 334 (597)
Q Consensus 263 l~p---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (597)
|++ .++.+++.+++++++++++|++.... ..+.+.... ...++. ++.
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~----------------~~~ 166 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIE----------------VDL 166 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEE----------------GGG
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeE----------------ecc
Confidence 999 88899999999999999999987532 122111110 001111 111
Q ss_pred HhcccCCCCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCC------CCEEEEecCchh
Q 007595 335 FLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKV------GDVYCWPTNLGW 408 (597)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~~~~~ 408 (597)
+.... ..........++++|||+|||||||+||||+++|+++++.+.+....+.+.+ +|++++.+|++|
T Consensus 167 ~~~~~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 241 (480)
T 3t5a_A 167 LDLDA-----PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241 (480)
T ss_dssp SCTTC-----C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTS
T ss_pred ccccc-----ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcC
Confidence 10000 0111233456789999999999999999999999999998888878888877 999999999999
Q ss_pred hhhH-HHHHHHHHhCCeEEeeCCC---CChhhHHHHHHHcCCeEEEecHHHHHHHHhc----CccCCCCCCCccEEEeeC
Q 007595 409 VMGP-IILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGTVPSLVKAWKNT----NCLQGLDWTKIRSFASTG 480 (597)
Q Consensus 409 ~~~~-~~i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~----~~~~~~~l~sLr~v~~gG 480 (597)
+.++ +.++.+|+.|+++++.+.. .++..+++.++++++| +..+|+++..++.. ......++++||.+++||
T Consensus 242 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG 320 (480)
T 3t5a_A 242 DMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGS 320 (480)
T ss_dssp TTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECC
T ss_pred ccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecC
Confidence 9996 5689999999999998643 3788999999999999 88899988887653 333456789999999999
Q ss_pred CCCCcchHHHHHHhc-----CCCCeecccCcccccccccccCCCC------------------------CCCcCccCCCC
Q 007595 481 ETSNVDDDLWLASKA-----YYKPIIECCGGTELASSYIQGSMLQ------------------------PQAFGAFSTAT 531 (597)
Q Consensus 481 e~l~~~~~~~~~~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~ 531 (597)
|++++++.+++.+++ ++++++|.||+||+++.++...... .....++|+|+
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~ 400 (480)
T 3t5a_A 321 ERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPR 400 (480)
T ss_dssp TTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCS
T ss_pred CcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCccc
Confidence 999999999998886 3457999999999987655433221 12345899999
Q ss_pred CCcEEEEEcCC-CCcCCCCCCceeeEEE-----ecccCCCchhhhcc
Q 007595 532 MTTGFVILDEL-GVPYPDDQPCVGEVGL-----FPLYLGATDRLLNA 572 (597)
Q Consensus 532 ~~~~~~IlD~~-~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~ 572 (597)
+ ++++|+|++ |+++|.|++ |||+| +.||+++++.+...
T Consensus 401 ~-~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~~pe~t~~~ 444 (480)
T 3t5a_A 401 S-PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQKPDESERT 444 (480)
T ss_dssp S-SEEEEEETTTTEECCTTBC--EEEEEESTTSCCCBTTBHHHHHHH
T ss_pred C-CEEEEEcCCCCcCCCCCCE--EEEEEeCCccccccccCcchhHHH
Confidence 9 999999966 899999994 99999 78899888766443
No 26
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.9e-51 Score=445.56 Aligned_cols=349 Identities=17% Similarity=0.111 Sum_probs=276.7
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++||++|+++.+.+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 11 AATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (504)
T ss_dssp HHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 34789999999986211 4899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEE--ccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (597)
+|.++.+++.+++++++++++|+ +... ...+........ ++ .++++......
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~~~~~~~~ 138 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGDLVRDGEP 138 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGGTEETTEE
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------EecchhhcCcc
Confidence 99999999999999999999999 5432 111211111111 11 12222222100
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCC--CCCCEEEEecCchhhhhH-HHHHHH
Q 007595 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDM--KVGDVYCWPTNLGWVMGP-IILFSS 418 (597)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~i~~~ 418 (597)
.............++++|||+|||||||+||||+++|+++.+.+.+....+++ +++|++++.+|++|+.++ ..++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp CCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred cccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence 00000111134467999999999999999999999999999888887777788 889999999999999998 568899
Q ss_pred HHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcC-c-cCCCCCCCccEEEeeCCCCCcchHHHHHHhcC
Q 007595 419 FLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTN-C-LQGLDWTKIRSFASTGETSNVDDDLWLASKAY 496 (597)
Q Consensus 419 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~-~-~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 496 (597)
|+.|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.. . ....++++||.+++|||++++++.+++.+.++
T Consensus 219 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~ 297 (504)
T 1t5h_X 219 LALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP 297 (504)
T ss_dssp HHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC
T ss_pred HHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC
Confidence 99999999987 478899999999999999999999999998754 2 23456899999999999999999999988874
Q ss_pred CCCeecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEcCCC---CcCCCCCCceeeEEEe------cccCCCch
Q 007595 497 YKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELG---VPYPDDQPCVGEVGLF------PLYLGATD 567 (597)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD~~~---~~vp~G~~giGel~v~------~gy~~~~~ 567 (597)
++++|.||+||+++.+. .. ....+++|+|+++++++|+|+++ +++|.|+. |||+|. .||+++++
T Consensus 298 -~~~~~~YG~TE~~~~~~-~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~~~~ 370 (504)
T 1t5h_X 298 -GEKVNIYGTTEAMNSLY-MR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLNQPQ 370 (504)
T ss_dssp -SEEEEEEEETTTEEEEE-EE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTTCHH
T ss_pred -cceeeeecccccccccc-cc---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecCCch
Confidence 78999999999943222 11 34557899999999999999888 99999994 999994 68888877
Q ss_pred hhhccc
Q 007595 568 RLLNAD 573 (597)
Q Consensus 568 ~~~~~~ 573 (597)
.+....
T Consensus 371 ~t~~~f 376 (504)
T 1t5h_X 371 ATAEKL 376 (504)
T ss_dssp HHHHHE
T ss_pred hhhhhh
Confidence 654433
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.1e-50 Score=444.92 Aligned_cols=352 Identities=14% Similarity=0.118 Sum_probs=279.3
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++.+||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 ~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 20 RALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp HHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEe
Confidence 4578999999998642 2235999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCC---CHHHHHHHHHhcCeeEEEEccceeccCccccchhhHH-hcCCC--eEEEEecCCCccccccccCcccHHHHhc
Q 007595 264 ADSF---AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVA-EAGPL--KAVVLPVIGDDVGIQLRQQDVSWKDFLS 337 (597)
Q Consensus 264 ~p~~---~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (597)
+|.+ +.+++.++++++++++++++.+..... .... ...+. ...++. .+.+..
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~------~~~~~~~~~~~~~~~~~~----------------~~~~~~ 153 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF------TADELNTNPKFLKIPAIA----------------LESIEL 153 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHH------CC-----CCEETTEEEEE----------------GGGCCG
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHH------HHhhhhhcccccccceee----------------chhccc
Confidence 9988 457899999999999999987532110 0000 00000 011111 111110
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHH-HH
Q 007595 338 CVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII-LF 416 (597)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-i~ 416 (597)
... .........+++++||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+.++.. ++
T Consensus 154 ~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 228 (590)
T 3kxw_A 154 NRS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCIL 228 (590)
T ss_dssp GGG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred ccc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHH
Confidence 000 011223456799999999999999999999999999999999888999999999999999999999976 88
Q ss_pred HHHHhCCeEEeeCCCC---ChhhHHHHHHHcCCeEEEecHHHHHHHHhc---CccCCCCCCCccEEEeeCCCCCcchHHH
Q 007595 417 SSFLSGAALALYHGSP---LERSFGKFVQDSGVSVLGTVPSLVKAWKNT---NCLQGLDWTKIRSFASTGETSNVDDDLW 490 (597)
Q Consensus 417 ~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~---~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 490 (597)
.+++.|+++++.+... ++..+++.|+++++|++.++|+++..+.+. ......++++||.+++|||++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 9999999999986421 678999999999999999999999998765 3334567899999999999999999999
Q ss_pred HHHhcC-----CCCeecccCcccccccccccCCC--------------------------CCCCcCccCCCCCCcEEEEE
Q 007595 491 LASKAY-----YKPIIECCGGTELASSYIQGSML--------------------------QPQAFGAFSTATMTTGFVIL 539 (597)
Q Consensus 491 ~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~~~Il 539 (597)
+.+.++ +.+++|.||+||+++.++..... ......++|+|+++ ++|+
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~ 386 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKII 386 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEE
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEE
Confidence 888763 34799999999998755432211 11234689999998 8899
Q ss_pred cCC-CCcCCCCCCceeeEEE-----ecccCCCchhhhc
Q 007595 540 DEL-GVPYPDDQPCVGEVGL-----FPLYLGATDRLLN 571 (597)
Q Consensus 540 D~~-~~~vp~G~~giGel~v-----~~gy~~~~~~~~~ 571 (597)
|++ ++++|+|++ |||+| +.||+++++.+..
T Consensus 387 d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~p~~t~~ 422 (590)
T 3kxw_A 387 DPDTLIPCDFDQV--GEIWVQSNSVAKGYWNQPEETRH 422 (590)
T ss_dssp CTTTCCBCCTTBC--EEEEEESTTSCCCBTTCHHHHHH
T ss_pred cCCCCcCCCCCCE--EEEEEeCCcccccccCChhHHHH
Confidence 976 999999994 99999 6889888876543
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.7e-50 Score=439.96 Aligned_cols=350 Identities=19% Similarity=0.169 Sum_probs=272.1
Q ss_pred ccCCCCCceEEEEecc--CCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Q 007595 185 RLRKEDDSVAVVWRED--RCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVV 261 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~--~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~v 261 (597)
+++++||++|+++.+. +...+..+++||+||+++++++|+.|++. + +||+|+|+++|++++++++|||+|+|+++|
T Consensus 29 ~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 29 WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYV 107 (562)
T ss_dssp HHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 4588999999998652 01112346899999999999999999999 9 799999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCC
Q 007595 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (597)
Q Consensus 262 pl~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (597)
|++|.++.+++.+++++++++++|+++...... .......++.. ....+.+.......
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 165 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----------ELPPETKVLDT-----------KNQSFIENLSTQDT 165 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----------CCCTTCEEEET-----------TCHHHHHHHHHSCC
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----------ccCccceeecc-----------cchhhhhhcccccc
Confidence 999999999999999999999999986532110 00111111111 11223333222221
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhh--------hcCCCCCCEEEEecCchhhhhHH
Q 007595 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG--------HIDMKVGDVYCWPTNLGWVMGPI 413 (597)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~ 413 (597)
........+++++||+|||||||+||||+++|+++.+.+.+... .+.+...+++++.++++|+.++.
T Consensus 166 -----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (562)
T 3ite_A 166 -----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG 240 (562)
T ss_dssp -----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH
T ss_pred -----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH
Confidence 11122345788999999999999999999999999877665433 24577889999999999999999
Q ss_pred HHHHHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHH
Q 007595 414 ILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493 (597)
Q Consensus 414 ~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 493 (597)
.++.++..|+++++.+....+..+.+.++++++|++.++|++++.+... ..++++||.+++|||++++++.+++.+
T Consensus 241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~ 316 (562)
T 3ite_A 241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSS 316 (562)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhh
Confidence 8999999999999875333456788999999999999999999887543 335789999999999999999888876
Q ss_pred hcCCCCeecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEcC-CCCcCCCCCCceeeEEE-----ecccCCCch
Q 007595 494 KAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDE-LGVPYPDDQPCVGEVGL-----FPLYLGATD 567 (597)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD~-~~~~vp~G~~giGel~v-----~~gy~~~~~ 567 (597)
. ++++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|+|++ |||+| +.||+++++
T Consensus 317 ~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~p~ 393 (562)
T 3ite_A 317 S-DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLNRPD 393 (562)
T ss_dssp C-SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESSCTT
T ss_pred C-CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCCCcc
Confidence 4 4689999999999987555444444455678999999999999994 6889999995 99999 678888776
Q ss_pred hh
Q 007595 568 RL 569 (597)
Q Consensus 568 ~~ 569 (597)
.+
T Consensus 394 ~t 395 (562)
T 3ite_A 394 AK 395 (562)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.7e-50 Score=432.80 Aligned_cols=354 Identities=15% Similarity=0.162 Sum_probs=270.3
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecC
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA 264 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~ 264 (597)
+++++||++|+++.+. ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 4578999999998765 999999999999999999986 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCCC
Q 007595 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPG 344 (597)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (597)
|.++.+++.+++++++++++|++...............+ .........................+.......
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI----EFAGRDITTNGLLDNTMGIQYDTSNETVVPKES---- 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC------------------------------------CC----
T ss_pred ccCCHHHHHHHHHhcCCCEEEEccccccccccccccccc----eeeeeecccccccccccccccccchhhccccCC----
Confidence 999999999999999999999987643211110000000 000000000000000000000000001100000
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCe
Q 007595 345 PKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAA 424 (597)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~ 424 (597)
..........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00011223567999999999999999999999999999998888888999999999999999999999888999999999
Q ss_pred EEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCeeccc
Q 007595 425 LALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECC 504 (597)
Q Consensus 425 lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (597)
+++.+ .+++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 4789999999999999999999999999987654332 289999999999999998888763 68999999
Q ss_pred CcccccccccccCCC-CCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhh
Q 007595 505 GGTELASSYIQGSML-QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRL 569 (597)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~ 569 (597)
|+||+++.++..... ......++|+|++|++++|+|++ .|+ +|||+| ++||+++++.+
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~~~~~~t 369 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYLYPTDLT 369 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCSBSTTCC
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhCcChhhc
Confidence 999998654433322 22356789999999999999976 355 499999 67888777655
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.7e-50 Score=435.14 Aligned_cols=335 Identities=19% Similarity=0.167 Sum_probs=264.6
Q ss_pred ccCCCCC-ceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDD-SVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++++|+ ++|+++.+. ++||+||+++++++|+.|. .|++|+|+++|++++++++|||+|+|+++|||
T Consensus 31 ~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl 98 (505)
T 3nyq_A 31 APTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98 (505)
T ss_dssp CCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEc
Confidence 3467776 999998765 9999999999999998774 48999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCC
Q 007595 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (597)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (597)
||.++.+++.+++++++++++|++.... .. ..... ...+.+.. .
T Consensus 99 ~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~~--~~~~~~~~-----------------------~--- 142 (505)
T 3nyq_A 99 NPKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALGA--LERVDVDV-----------------------R--- 142 (505)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGTT--SEEEECCT-----------------------T---
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhcc--cccccccc-----------------------c---
Confidence 9999999999999999999999986421 00 00000 01111100 0
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhH-HHHHHHHHhC
Q 007595 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSG 422 (597)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G 422 (597)
...........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..+. +.++.+|+.|
T Consensus 143 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 143 ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 000112234567899999999999999999999999999999988888999999999999999998887 4689999999
Q ss_pred CeEEeeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCcc---CCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCC
Q 007595 423 AALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCL---QGLDWTKIRSFASTGETSNVDDDLWLASKAYYKP 499 (597)
Q Consensus 423 ~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (597)
+++++.+ .+++..+++.+ ++++|+++++|+++..|.+.... ...+++++|.+++|||++++++.+++...+ +++
T Consensus 223 ~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~ 299 (505)
T 3nyq_A 223 GSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRR 299 (505)
T ss_dssp CEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCC
T ss_pred CEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCe
Confidence 9999986 57888888888 89999999999999999874221 123467899999999999999999888775 579
Q ss_pred eecccCcccccccccccCCCCCCCcCccCCCCCCcEEEEEcCCCCcCCC---CCCceeeEEE-----ecccCCCchhhhc
Q 007595 500 IIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPD---DQPCVGEVGL-----FPLYLGATDRLLN 571 (597)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD~~~~~vp~---G~~giGel~v-----~~gy~~~~~~~~~ 571 (597)
++|.||+||+++.++. ........+++|+|++|++++|+|++|++++. |+ +|||+| +.||+++++.+..
T Consensus 300 ~~~~YG~TE~~~~~~~-~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~--~GEl~v~g~~v~~GY~~~~~~t~~ 376 (505)
T 3nyq_A 300 VIERYGMTETLMNTSV-RADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGES--VGEIQVRGPNLFTEYLNRPDATAA 376 (505)
T ss_dssp CEEEEEETTTEEEEEC-CTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCC--CEEEEEESTTSCCEETTCHHHHHH
T ss_pred eecccchhhccccccc-CCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCc--eEEEEEecCchhhhhCCChhHhhh
Confidence 9999999999865433 33344556799999999999999999999986 77 599999 6788887776544
Q ss_pred cc
Q 007595 572 AD 573 (597)
Q Consensus 572 ~~ 573 (597)
..
T Consensus 377 ~f 378 (505)
T 3nyq_A 377 AF 378 (505)
T ss_dssp TB
T ss_pred hh
Confidence 43
No 31
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.3e-49 Score=436.75 Aligned_cols=363 Identities=18% Similarity=0.160 Sum_probs=281.9
Q ss_pred ccCCCCCceEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEec
Q 007595 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl 263 (597)
+++.+|+.+++.... +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 30 ~a~~~p~~~~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 104 (576)
T 3gqw_A 30 AALSSAGMNFYDRRC-----QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPL 104 (576)
T ss_dssp HTTSSCEEEEECTTS-----CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhCCCCeEEeCCCC-----CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeec
Confidence 457889988875321 2235999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC-------HHHHHHHHHhcCeeEEEEccceeccCccccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHh
Q 007595 264 ADSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFL 336 (597)
Q Consensus 264 ~p~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 336 (597)
++.++ .+++.+++++++++++|++.+.. +.........+...... ..+.+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~~~-- 161 (576)
T 3gqw_A 105 AIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPELHVLS---------------HAWFK-- 161 (576)
T ss_dssp CCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTCEEEE---------------HHHHH--
T ss_pred CCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCcceecc---------------hhhhh--
Confidence 99999 89999999999999999987532 12222222221111111 01111
Q ss_pred cccCCCCCCCCCCCccCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhh-cCCCCCCEEEEecCchhhhhHHH-
Q 007595 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH-IDMKVGDVYCWPTNLGWVMGPII- 414 (597)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~- 414 (597)
.... .........+++++||+|||||||+||||+++|+++++.+.+.... ++++++|++++.+|++|+.+++.
T Consensus 162 -~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 236 (576)
T 3gqw_A 162 -ALPE----ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGF 236 (576)
T ss_dssp -TSCC----CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHH
T ss_pred -cccc----cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHH
Confidence 1111 0112223467999999999999999999999999998887776544 78999999999999999999865
Q ss_pred HHHHHHhCCeEEeeCC---CCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCc---cCCCCCCCccEEEeeCCCCCcchH
Q 007595 415 LFSSFLSGAALALYHG---SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNC---LQGLDWTKIRSFASTGETSNVDDD 488 (597)
Q Consensus 415 i~~~L~~G~~lvl~~~---~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~---~~~~~l~sLr~v~~gGe~l~~~~~ 488 (597)
++.++..|+++++.+. ..++..+++.|+++++|++.++|+++..+.+... ....++++||.+++|||++++++.
T Consensus 237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~ 316 (576)
T 3gqw_A 237 LLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQL 316 (576)
T ss_dssp THHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHH
Confidence 6778999999988753 1477899999999999999999999988765422 245678999999999999999999
Q ss_pred HHHHHhcC-----CCCeecccCcccccccccccCCCCC---------------------------CCcCccCCCCCCcEE
Q 007595 489 LWLASKAY-----YKPIIECCGGTELASSYIQGSMLQP---------------------------QAFGAFSTATMTTGF 536 (597)
Q Consensus 489 ~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~~ 536 (597)
+++.+.++ +.+++|.||+||+++.++....... ....++|+|++|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~ 396 (576)
T 3gqw_A 317 HQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGI 396 (576)
T ss_dssp HHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEE
T ss_pred HHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeE
Confidence 99888764 5789999999999875543321110 012389999999999
Q ss_pred EEEcCCCCcCCCCCCceeeEEE-----ecccCCCchhhhcccccccccccc
Q 007595 537 VILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEVYFSGM 582 (597)
Q Consensus 537 ~IlD~~~~~vp~G~~giGel~v-----~~gy~~~~~~~~~~~~~~~~~~~~ 582 (597)
+|+|++|+++|.|+ +|||+| ++||+++++.+.......+|.+||
T Consensus 397 ~i~d~~g~~~~~g~--~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD 445 (576)
T 3gqw_A 397 EIRNEAGMPVAERV--VGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGD 445 (576)
T ss_dssp EEECTTSCBCCTTB--CEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEE
T ss_pred EEECCCCCCCCCCC--eEEEEEeCccccccccCCccccccccCCCeeeccc
Confidence 99999999999999 499999 688888876553333333444343
No 32
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=1.7e-30 Score=269.71 Aligned_cols=196 Identities=14% Similarity=0.058 Sum_probs=162.2
Q ss_pred CCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHh---hhcCCCCCCEEEEecCc-hhhhhHHHHHHHHHhCCeEEee
Q 007595 353 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNL-GWVMGPIILFSSFLSGAALALY 428 (597)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~i~~~L~~G~~lvl~ 428 (597)
.+++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|+ .|+.+....+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999988877543 45678899999999999 88888887778899999 4444
Q ss_pred CCCCChh-----------------------hHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCc
Q 007595 429 HGSPLER-----------------------SFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNV 485 (597)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~ 485 (597)
. .+++. .+++.|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 34555 77779999999999999999999987643333457899999999999999
Q ss_pred chHHHHH-HhcCCCCeecccCcccccccccccCCCCCCCcCccCCC------CCCcEEEEEcC-CCCcCCCCCCceeeEE
Q 007595 486 DDDLWLA-SKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTA------TMTTGFVILDE-LGVPYPDDQPCVGEVG 557 (597)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~IlD~-~~~~vp~G~~giGel~ 557 (597)
++.+++. +.+|+++++|.||+||++++...+ .. .++|+| +++++++|+|+ +|+++|+|+ +|||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~-~~-----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~--~GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSL-LI-----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGE--RGNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC-CB-----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC--EEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecc-cc-----ccCCCcccccCCCCCeEEEEECCCCCcCCCCCC--ceEEE
Confidence 9999999 888789999999999988643221 11 158999 99999999997 999999999 59999
Q ss_pred E
Q 007595 558 L 558 (597)
Q Consensus 558 v 558 (597)
|
T Consensus 318 v 318 (369)
T 3hgu_A 318 V 318 (369)
T ss_dssp E
T ss_pred E
Confidence 9
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.96 E-value=7.2e-30 Score=263.27 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=158.3
Q ss_pred CCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCCCCh
Q 007595 355 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLE 434 (597)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~ 434 (597)
.+++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+.++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 4789999999999999999999999999999988889999999999999999999999989999999999999875443
Q ss_pred hhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCCCCCccEEEeeCCCCCcchHHHHHHhcCCCCeecccCccccccccc
Q 007595 435 RSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYI 514 (597)
Q Consensus 435 ~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (597)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999987653 34468999999999999999999888753 579999999999986543
Q ss_pred ccCCCCCCCcCccCCCCCCcEEEEEcCCCCcCCCCCCceeeEEEe
Q 007595 515 QGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLF 559 (597)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~~~IlD~~~~~vp~G~~giGel~v~ 559 (597)
. ........+++|.|.||+++.+.+ .|||++.
T Consensus 190 ~-~~~~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~ 221 (358)
T 4gs5_A 190 L-KALNGPEASELYVFLPGIQYGVDE------------RGCLHIS 221 (358)
T ss_dssp E-EECSSTTCCSCEEECTTCEEEECT------------TSEEEEE
T ss_pred c-ccccccccceeeccCCCeEEEecC------------cCceEEe
Confidence 3 333344567899999999887732 2888883
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.96 E-value=1.4e-28 Score=261.83 Aligned_cols=201 Identities=17% Similarity=0.114 Sum_probs=162.1
Q ss_pred cCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHh---hhcCCCCCCEEEEecCch-hhhhHHHHHHHHHhCCeEEe
Q 007595 352 YRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLG-WVMGPIILFSSFLSGAALAL 427 (597)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~i~~~L~~G~~lvl 427 (597)
..+++++++|+|||||||+||||+++|+++.+...... ..++++++|++++..|++ |..+...++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999876554433 357889999999999985 56666677889999999998
Q ss_pred eCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCC--CCCccEEEeeCCCCCcchHHHHHHhcCCCCeecccC
Q 007595 428 YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLD--WTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 505 (597)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~--l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (597)
.+. .++..+++.|+++++|++.++|+++..|.+.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 763 58899999999999999999999999998753322222 47999999999999999999998877 589999999
Q ss_pred ccccccc-ccccCCCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEEe
Q 007595 506 GTELASS-YIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLF 559 (597)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v~ 559 (597)
+||+++. +...+.. .....+.|.+++.++|+| ++|+++|.|+. |||+|.
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~ 296 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFT 296 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEE
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEe
Confidence 9998532 2222221 111245577899999999 56999999994 999993
No 35
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.96 E-value=2e-28 Score=259.90 Aligned_cols=201 Identities=18% Similarity=0.157 Sum_probs=164.5
Q ss_pred cCCC-CCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhH-HHHHHHHHhCCeEE
Q 007595 352 YRPV-DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSGAALA 426 (597)
Q Consensus 352 ~~~~-~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lv 426 (597)
..++ +++++|+|||||||+||||+++|+++.+..... ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997665554 334588999999999998755544 56788899999999
Q ss_pred eeCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCC--CCCCccEEEeeCCCCCcchHHHHHHhcCCCCeeccc
Q 007595 427 LYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGL--DWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECC 504 (597)
Q Consensus 427 l~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (597)
+.+ ..++..+++.|+++++|++.++|+++..|.+....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 45789999999999999999999999999876433333 378999999999999999999998887 68999999
Q ss_pred CcccccccccccCCCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEEe
Q 007595 505 GGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLF 559 (597)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v~ 559 (597)
|+||+++..+.... +. ...+|.|.+++.++|+| ++|+++|+|+. |||+|.
T Consensus 239 G~TE~~~~~~~~~~--~~-~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~ 289 (436)
T 3qov_A 239 GMTEMNGPGVAFEC--QE-QNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLT 289 (436)
T ss_dssp EEGGGTEEEEEEEC--TT-CSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEE
T ss_pred cchhhcCCeeEEec--CC-CCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEe
Confidence 99999643222211 11 12367788899999999 78999999994 999993
No 36
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.95 E-value=1.9e-27 Score=252.51 Aligned_cols=201 Identities=19% Similarity=0.138 Sum_probs=162.3
Q ss_pred cCCCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHh---hhcCCCCCCEEEEecCc-hhhhhHHHHHHHHHhCCeEEe
Q 007595 352 YRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNL-GWVMGPIILFSSFLSGAALAL 427 (597)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~i~~~L~~G~~lvl 427 (597)
..+++++++|+|||||||+||||+++|+++........ ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34668999999999999999999999999876654332 35788999999999998 566666678899999999998
Q ss_pred eCCCCChhhHHHHHHHcCCeEEEecHHHHHHHHhcCccCCCC--CCCccEEEeeCCCCCcchHHHHHHhcCCCCeecccC
Q 007595 428 YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLD--WTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 505 (597)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~--l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (597)
.+. .++..+++.|+++++|++.++|+++..|.+.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 763 58899999999999999999999999998754322222 47999999999999999999988777 589999999
Q ss_pred ccccccc-ccccCCCCCCCcCccCCCCCCcEEEEEc-CCCCcCCCCCCceeeEEEe
Q 007595 506 GTELASS-YIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLF 559 (597)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~IlD-~~~~~vp~G~~giGel~v~ 559 (597)
+||+++. +...+.. ....++.|.+++.++|+| ++|+++|.|+. |||+|.
T Consensus 244 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~ 294 (437)
T 2y27_A 244 LSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFT 294 (437)
T ss_dssp ETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEE
T ss_pred chhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEe
Confidence 9998432 2222221 111256677899999999 46999999994 999993
No 37
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.71 E-value=7.2e-11 Score=127.65 Aligned_cols=132 Identities=12% Similarity=0.069 Sum_probs=108.9
Q ss_pred hHHhcCCccchhhhHHHHHHHhhccCCCC-CcHHHHHHHHHhhccCCCCCchhHHHHHHHhhcccccccCCC----Cc--
Q 007595 12 DLVKVGLKVDEAEDFDNILKQLIDGSKGL-DPKEIWKELVARKVFKPWHPHGLHQLLYYSVYNDWDASINGP----PL-- 84 (597)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~lv~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~----~~-- 84 (597)
+.+++++.+++..+|.++|++++++..++ +||++||++ +++.+++.|+.+++|+ ||++|++++..... ..
T Consensus 373 n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~ 449 (520)
T 2jgp_A 373 NTLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTL 449 (520)
T ss_dssp EEEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEE
T ss_pred eeeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCcee
Confidence 55778889999999999999999998888 999999999 9999999999999999 99999998754321 10
Q ss_pred cccCCccc--cccccHHHHHHHhCCcccccc-CCCCCCCHHHHHHHHhhCHHHHHHHHHHHcCceeeccc
Q 007595 85 YWFPSLDQ--SKLTNLGHAMEIHGPKFLGAM-YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFHEAP 151 (597)
Q Consensus 85 ~~~~~~~~--~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~ 151 (597)
...+.... ..+|||.+.+.+.++++.+.+ |++ ++|++.+++++.++|.++|+++..+++.+.
T Consensus 450 ~~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l 514 (520)
T 2jgp_A 450 APFMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIRL 514 (520)
T ss_dssp EECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCBG
T ss_pred EEeecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCch
Confidence 11111122 678999998888888999999 999 999999999999999999999875554443
No 38
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.23 E-value=9.7e-09 Score=110.04 Aligned_cols=132 Identities=8% Similarity=-0.020 Sum_probs=96.1
Q ss_pred hHHhcCCccch--hhhHHHHHHHhhccCCCC-CcHHHHHHHHHhh---ccCCCCCchhHHHHHHHhhcccccccCCCC--
Q 007595 12 DLVKVGLKVDE--AEDFDNILKQLIDGSKGL-DPKEIWKELVARK---VFKPWHPHGLHQLLYYSVYNDWDASINGPP-- 83 (597)
Q Consensus 12 ~~~~~~~~~~~--~~~f~~~l~~~~~~~~~~-~hq~~pf~~~lv~---~l~~~r~~~~~~l~~fq~~~~~~~~~~~~~-- 83 (597)
+.+++++.+++ ..+|.++|++++++..++ +| ++||++ |++ .|+..|..+.+|+ ||++|++++......
T Consensus 298 n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~ 373 (493)
T 4hvm_A 298 DRVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLT 373 (493)
T ss_dssp EEEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBTTGG--GCEEECC----------
T ss_pred ceeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCCCcc--eeEEEEEEecCCccccc
Confidence 46678888888 999999999999998888 99 999999 999 8999999999999 999999986433210
Q ss_pred ----------ccc--cCC--------------cccccccc---HHHHHHHhCCcccccc-CCCCCCCHHHHHHHHhhCHH
Q 007595 84 ----------LYW--FPS--------------LDQSKLTN---LGHAMEIHGPKFLGAM-YKDPFTSFSLFQKFTVEHPE 133 (597)
Q Consensus 84 ----------~~~--~~~--------------~~~~~~~d---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~ 133 (597)
... .+. -..+++|| +.+.+.+.++++.+.+ |++ ++| +.+++++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~ 447 (493)
T 4hvm_A 374 RGERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALL 447 (493)
T ss_dssp ----------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHH
T ss_pred cccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHH
Confidence 000 000 01224677 8888888889999999 999 999 99999999
Q ss_pred HHHHHHHHHcCceeeccccc
Q 007595 134 AYWEIVLKEISVKFHEAPKC 153 (597)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~ 153 (597)
++|.++|+++..+++.+..+
T Consensus 448 ~~~~~~L~~~~~~p~~~l~~ 467 (493)
T 4hvm_A 448 DGLDAAMAQAVADPSAPLPH 467 (493)
T ss_dssp HHHHHHHHHHHHCTTSBCCC
T ss_pred HHHHHHHHHHHhCCCCcccc
Confidence 99999999997666665554
No 39
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.18 E-value=5.9e-09 Score=109.80 Aligned_cols=136 Identities=7% Similarity=-0.066 Sum_probs=104.1
Q ss_pred hhHHhcCCccchhhhHHHHHHHhhccCCCC-CcHHHHHHHHHhhccCCCCCchhHHHHHHHhhcccccccCCC--Ccc--
Q 007595 11 VDLVKVGLKVDEAEDFDNILKQLIDGSKGL-DPKEIWKELVARKVFKPWHPHGLHQLLYYSVYNDWDASINGP--PLY-- 85 (597)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~lv~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~--~~~-- 85 (597)
.+.+++++.+++..+|.++|++++++..++ +||++||++ +++.++..+ +.+|+ |+++|++++..... ...
T Consensus 276 ~n~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~ 350 (436)
T 1l5a_A 276 VNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNA--EQSYF--MSPFINILPFESPHFADCQTE 350 (436)
T ss_dssp CEEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCT--TCCBC--CCSEEEEECCCCCCCTTCEEE
T ss_pred EEEEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhcccc--cCCCc--cceEEEeeccCccccCCCeeE
Confidence 356788899999999999999999998888 999999999 999997654 45778 99999998644321 000
Q ss_pred ccCCccccccccHHHHHH-HhCCcccccc-CCCCCCCHHHHHHHHhhCHHHHHHHHHHHcCce---eeccccccccC
Q 007595 86 WFPSLDQSKLTNLGHAME-IHGPKFLGAM-YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVK---FHEAPKCILDR 157 (597)
Q Consensus 86 ~~~~~~~~~~~dl~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~---~~~~~~~~l~~ 157 (597)
.........+ ||.+.+. ..++++.+.+ |++ ++|++.+++++.++|.++|+++..+ ++.+..++|..
T Consensus 351 ~~~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~ 421 (436)
T 1l5a_A 351 LKVLASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAE 421 (436)
T ss_dssp EEEEEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHS
T ss_pred EEecCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCC
Confidence 0111112233 7777776 3567899999 999 9999999999999999999999876 66666666433
No 40
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=96.92 E-value=7.2e-06 Score=86.78 Aligned_cols=124 Identities=11% Similarity=0.129 Sum_probs=87.2
Q ss_pred hHHhcCCccchhhhHHHHHHHhhccCCCCCcHHHHHHHHHhhccCCC-----CCchhHHHHHHHhhcccccccCC----C
Q 007595 12 DLVKVGLKVDEAEDFDNILKQLIDGSKGLDPKEIWKELVARKVFKPW-----HPHGLHQLLYYSVYNDWDASING----P 82 (597)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~pf~~~lv~~l~~~-----r~~~~~~l~~fq~~~~~~~~~~~----~ 82 (597)
+.+++++.++...+|.++|++++++..++.||++||+. + +.+... +....+| +++|+++..... .
T Consensus 308 n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~p----~~~f~~~~~~~~~~~~~ 381 (466)
T 2xhg_A 308 SQYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQP----EVTFNYLGQFDADMRTE 381 (466)
T ss_dssp EEEEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCCC----SEEEEEEEECCTTCSSS
T ss_pred eeccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCCC----eEEEeecCcccccccCC
Confidence 45678888889999999999999987666999999985 4 555432 2223333 467776542111 0
Q ss_pred Cc--cccCC-------------ccccccccHHHHHHHhCCcccccc-CCCCCCCHHHHHHHHhhCHHHHHHHHHHHcCce
Q 007595 83 PL--YWFPS-------------LDQSKLTNLGHAMEIHGPKFLGAM-YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVK 146 (597)
Q Consensus 83 ~~--~~~~~-------------~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~ 146 (597)
.. ...+. .....+++|.+.+...++++.+.+ |++ ++|++.+|+++.++|.++|+++..+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~~ 456 (466)
T 2xhg_A 382 LFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIAH 456 (466)
T ss_dssp SCEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00110 012237788877766778899999 999 9999999999999999999997643
No 41
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=93.67 E-value=0.0013 Score=68.08 Aligned_cols=111 Identities=9% Similarity=-0.094 Sum_probs=73.0
Q ss_pred CccchhhhHHHHHHHhhccCCCC-CcHHHH-----HHHHHhhccCCCCCchhHHHHHHHhhc-ccccccCCC---Cc--c
Q 007595 18 LKVDEAEDFDNILKQLIDGSKGL-DPKEIW-----KELVARKVFKPWHPHGLHQLLYYSVYN-DWDASINGP---PL--Y 85 (597)
Q Consensus 18 ~~~~~~~~f~~~l~~~~~~~~~~-~hq~~p-----f~~~lv~~l~~~r~~~~~~l~~fq~~~-~~~~~~~~~---~~--~ 85 (597)
+.+....+|.++|++++++..++ +||++| |++ +++.+++. +|+ +++| ++....... .. .
T Consensus 292 lp~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~-----~pl---~~~~~n~~~~~~~~~~~~~~~~ 362 (422)
T 1q9j_A 292 AEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG-----LPP---LVFCTDATSFPTMRTPPGLEIE 362 (422)
T ss_dssp ECCCSSCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS-----SCC---CEEEECCCCCCSCCCCTTCEEE
T ss_pred eeccCCCCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC-----CCc---eEEEecCCcCCCCCCCCCceeE
Confidence 34555678999999999998888 999996 889 88888642 232 3334 332221111 00 0
Q ss_pred ccCCccc-cccccHHHH-HHHhCCccccccCCCCCCCHHHHHHHHhhCHHHHHHHHHHHcCce
Q 007595 86 WFPSLDQ-SKLTNLGHA-MEIHGPKFLGAMYKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVK 146 (597)
Q Consensus 86 ~~~~~~~-~~~~dl~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~ 146 (597)
....... ..++||.+. +...++++.+.+|++ + .+++++.++|.++|+++..+
T Consensus 363 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~ 416 (422)
T 1q9j_A 363 DIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSE 416 (422)
T ss_dssp EEEEEECCBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTS
T ss_pred eeecccccCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcC
Confidence 0111112 456777766 556677777766777 4 88999999999999998643
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=84.39 E-value=5.3 Score=40.87 Aligned_cols=101 Identities=11% Similarity=0.092 Sum_probs=77.0
Q ss_pred CCCCceEEEEeccCCCCCCc--eeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCC--CHHHHHHHHHHHHcCCEEEe
Q 007595 188 KEDDSVAVVWREDRCDDSSV--NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPM--TVHAVIIYLAIILAGYVVVS 262 (597)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~--s~e~i~a~LA~~k~Ga~~vp 262 (597)
..++.+|.+....+ ..|.. ..+|.+.+...+..+++.+... +.++|++...++. ....+..+++.+..|+..++
T Consensus 87 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34577776654432 33333 3579999988888888888778 9999999999985 34445567889999999988
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEEccce
Q 007595 263 IADSFAAREIATRLRVSKAKGIFTQDFI 290 (597)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (597)
+++ ...+++...+++.++.++++.+.+
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 765 478889999999999999987654
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=83.25 E-value=6 Score=40.58 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=76.8
Q ss_pred CCCCceEEEEeccCCCCCCc--eeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEe
Q 007595 188 KEDDSVAVVWREDRCDDSSV--NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMT--VHAVIIYLAIILAGYVVVS 262 (597)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s--~e~i~a~LA~~k~Ga~~vp 262 (597)
..++.+|.+....+ ..|.. ..+|.+.+...+..+++.+... +.++|++..+++-+ ...+..+++.+..|+..++
T Consensus 89 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34567776544432 33333 3579999988888888888778 99999999998863 4445667888999999988
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEEccce
Q 007595 263 IADSFAAREIATRLRVSKAKGIFTQDFI 290 (597)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (597)
+++. ..+++...+++.++.+++..+.+
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHH
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHH
Confidence 8654 78888999999999999987654
No 44
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=82.38 E-value=12 Score=39.55 Aligned_cols=100 Identities=14% Similarity=-0.020 Sum_probs=72.2
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++....+ .+..+|++.+...+... ....++.++|++...++-+...- ..+++++..|+..+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL-EAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHhcCcEEEecCc
Confidence 4566776543211 24568888775444333 34568999999998888775543 336788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHHHHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l 459 (597)
....+++...++..++.++++.+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 77788999999999999999988765544
No 45
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=82.29 E-value=6.3 Score=40.31 Aligned_cols=98 Identities=11% Similarity=0.005 Sum_probs=77.2
Q ss_pred CceEEEEeccCCCCCCc--eeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCC--CHHHHHHHHHHHHcCCEEEecCC
Q 007595 191 DSVAVVWREDRCDDSSV--NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPM--TVHAVIIYLAIILAGYVVVSIAD 265 (597)
Q Consensus 191 d~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~--s~e~i~a~LA~~k~Ga~~vpl~p 265 (597)
+.+|.+....+ ..|.. ..+|.+.+...+..+++.+... +.++|++...++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSG-TTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSG-TTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSC-SSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCC-cCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 77887665543 33333 3579999999888898888888 9999999999874 45556678889999999888765
Q ss_pred CCCHHHHHHHHHhcCeeEEEEccce
Q 007595 266 SFAAREIATRLRVSKAKGIFTQDFI 290 (597)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (597)
...+++...+++.++.+++..+.+
T Consensus 165 -~~~~~~~~~i~~~~~t~~~~~P~~ 188 (436)
T 3qov_A 165 -GNSKRQIKFISDFKTTALHAIPSY 188 (436)
T ss_dssp -CCHHHHHHHHHHHTCCEEECCHHH
T ss_pred -CCHHHHHHHHHHHCCCEEEECHHH
Confidence 467888899999999999887654
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=82.07 E-value=8.2 Score=40.38 Aligned_cols=95 Identities=14% Similarity=-0.026 Sum_probs=71.5
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++. + +..+|++.+...+... ....++.++|++...++-+.... ..+++++..|+..+..+.
T Consensus 19 ~pd~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---D------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI-ELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---C------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEecCC
Confidence 467787654 1 2468888775544433 34568999999999888775543 346788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHHHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSLVKA 458 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~~ 458 (597)
....+++..++++.++.++...+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7778899999999999999988776555
No 47
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=81.49 E-value=3.8 Score=43.53 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=72.1
Q ss_pred CCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCC
Q 007595 355 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS 431 (597)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~ 431 (597)
++.+|++.+..+.++ ..+|.+.+...+... ....++.++|++...++-+.... ..+++++..|+..+..+..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF-MPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHH-HHHHHHHHcCCEEeecCCc
Confidence 355555544444433 357888775444333 34568999999998888775543 3467889999999988777
Q ss_pred CChhhHHHHHHHcCCeEEEecHHHHHHH
Q 007595 432 PLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (597)
Q Consensus 432 ~~~~~l~~~i~~~~vt~~~~~Ps~l~~l 459 (597)
....++...++..++++++.....+..+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7788999999999999999887765544
No 48
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=80.07 E-value=10 Score=40.10 Aligned_cols=103 Identities=8% Similarity=-0.045 Sum_probs=72.7
Q ss_pred CCCCeEEEEecCCC-CCCceEEEeCCchHHHHHHH---HhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeC
Q 007595 354 PVDSVINILFSSGT-TGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429 (597)
Q Consensus 354 ~~~~~a~iiyTSGT-TG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~ 429 (597)
.|+.+|++....+. .+. .-.+|++.+...+.. .....++.++|++...++-+.... ..+++++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV-MTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHhCCEEEccC
Confidence 46778876543211 121 235777776544433 334568999999999888775543 34678899999999888
Q ss_pred CCCChhhHHHHHHHcCCeEEEecHHHHHHH
Q 007595 430 GSPLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (597)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l 459 (597)
......++..++++.+++.+...+.....+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 777788999999999999999887665544
No 49
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=79.44 E-value=15 Score=39.07 Aligned_cols=101 Identities=10% Similarity=-0.047 Sum_probs=72.2
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHh---hhc-CCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHI-DMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~---~~~-~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~ 429 (597)
.|+.+|++.... .| ++..+|.+.+...+.... ... ++.++|++...++-+..... .+++++..|+..+..+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~-~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWL-VILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHH-HHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHH-HHHHHHHcCeEEEecC
Confidence 457777765421 12 245688887755444333 334 88999999988887755433 3678899999998887
Q ss_pred CCCChhhHHHHHHHcCCeEEEecHHHHHHH
Q 007595 430 GSPLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (597)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l 459 (597)
....++++...++..++.++++.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 777778899999999999999877665544
No 50
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=77.92 E-value=10 Score=39.96 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=70.5
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHH---HhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++. +.+| -.+|++.+...+.. .....++.++|++...++-+...- ..+++++..|+..+..+.
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFV-LAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCEEeccCC
Confidence 467787654 2222 35788777544433 334568999999998888775543 346788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHHHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSLVKA 458 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~~ 458 (597)
....+++...++..++.++...+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 7778899999999999999987755443
No 51
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=75.89 E-value=15 Score=38.19 Aligned_cols=98 Identities=8% Similarity=-0.031 Sum_probs=69.4
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++.. .+ +..+|++.+...+... ....++.++|++...++-+.... ..+++++..|+..+..+.
T Consensus 15 ~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCC
Confidence 4567776642 12 2468888775444333 34568899999999888776543 346788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEe--cHHHHHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGT--VPSLVKAW 459 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~--~Ps~l~~l 459 (597)
...++++..++++.+++.+.. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 777889999999999999888 55554444
No 52
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=74.53 E-value=20 Score=36.91 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=72.4
Q ss_pred CCCCeEEEEecC--CCCCCceEEEeCCchHHHHHHHHh---hhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEee
Q 007595 354 PVDSVINILFSS--GTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALY 428 (597)
Q Consensus 354 ~~~~~a~iiyTS--GTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~ 428 (597)
.|+.+|++.... +.+| ....+|.+.+...+.... ...+. ++|++...++-+.... ..+++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV-VAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH-HHHHHHHHhCcEEEee
Confidence 467888765542 2233 346788888765554443 33454 8999998887775543 3467889999999887
Q ss_pred CC---CCChhhHHHHHHHcCCeEEEecHHHHHHHHh
Q 007595 429 HG---SPLERSFGKFVQDSGVSVLGTVPSLVKAWKN 461 (597)
Q Consensus 429 ~~---~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~ 461 (597)
+. ....+++..+++..++..++..+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 64 3345788999999999999998877665543
No 53
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=74.08 E-value=15 Score=39.82 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.++.+|++.. +..+| .+..+|.+.+...+... ....++.++|++..+++.+.... ..+++++..|+..+..+.
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v-va~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA-VAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHcCcEEEecCC
Confidence 3577777643 22222 24568888775444333 34568999999999998876543 346788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEecH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVP 453 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~P 453 (597)
...++++...+++.++.++++..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77888999999999999887753
No 54
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=71.56 E-value=17 Score=38.50 Aligned_cols=96 Identities=13% Similarity=-0.028 Sum_probs=70.1
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++. . +-.+|.+.+...+... ....++.++|++...++-+.... ..+++++..|+..+..+.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF-IGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEEeCC
Confidence 457777653 1 2357887775444333 34468999999998888775543 336788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHHHHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l 459 (597)
....+++..+++..++.+++..+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 77788999999999999999887655443
No 55
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=71.34 E-value=20 Score=38.22 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=69.7
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHH---HhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++.... .| ....+|.+.+...... .....++.++|++...++-+.... ..+++++..|+..+..+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~-~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW-YCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHhCCEEEEeCCc
Confidence 578888776532 12 2466888877544433 334568999999999888775543 346788999999988876
Q ss_pred CCChhhHHHHHHHcCCeEEEecH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVP 453 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~P 453 (597)
...+.++...+++.++.++.+.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 67778899999999999888754
No 56
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=70.94 E-value=21 Score=38.81 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHH---Hhh-hcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWG-HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~---~~~-~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~ 429 (597)
.++.+|++.. +..+| .+..+|.+.+...+.. ... ..++.++|++..+++.+...-. .+++++..|+..+..+
T Consensus 95 ~pd~~Al~~~-~~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~-a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII-TLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH-HHHHHHHTTCEEEECC
T ss_pred CCCceEEEEE-cCCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH-HHHHHHHcCCEEEeeC
Confidence 4577877643 22223 2346888877544433 334 6788999999999988765443 4678899999999888
Q ss_pred CCCChhhHHHHHHHcCCeEEEecHH
Q 007595 430 GSPLERSFGKFVQDSGVSVLGTVPS 454 (597)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~~~~~Ps 454 (597)
....+..+...+++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7778889999999999999887643
No 57
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=70.27 E-value=15 Score=38.33 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=61.5
Q ss_pred EeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEe
Q 007595 375 PWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 451 (597)
Q Consensus 375 ~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~ 451 (597)
.+|.+.+...+... ....++.++|++...++-+...- ..+++++..|+..+..+......++..++++.++.++.+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEAL-VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 47888775444333 34568999999998888775543 346788999999998887777889999999999999988
Q ss_pred cHHH
Q 007595 452 VPSL 455 (597)
Q Consensus 452 ~Ps~ 455 (597)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7653
No 58
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=67.33 E-value=36 Score=36.03 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=72.0
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++....+ .+-.+|++.+...+... ....++.++|++...++-+.... ..+++++..|+..+..+.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLI-QAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH-HHHHHHHHhCcEEEEecC
Confidence 4677887654411 34578888775544433 34568999999999888775533 346788999999888765
Q ss_pred CC---ChhhHHHHHHHcCCeEEEecHHHHHHHH
Q 007595 431 SP---LERSFGKFVQDSGVSVLGTVPSLVKAWK 460 (597)
Q Consensus 431 ~~---~~~~l~~~i~~~~vt~~~~~Ps~l~~l~ 460 (597)
.. ....+...++..++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 33 2356788899999999999888776653
No 59
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=66.84 E-value=27 Score=34.42 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=67.4
Q ss_pred CCCceEEEEeccCCCCCCc--eeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEec
Q 007595 189 EDDSVAVVWREDRCDDSSV--NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMT--VHAVIIYLAIILAGYVVVSI 263 (597)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s--~e~i~a~LA~~k~Ga~~vpl 263 (597)
.++.+|.+....+ ..|.. ..+|.+.+...+..+++.+... +.++|++..+++-+ .--+...++++..|+.+++.
T Consensus 89 ~~~~~a~i~~TSG-TTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESGG-TTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEECC----CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECCC-CCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4566676655432 33333 3578888888887777777777 99999999999863 23344455568999966664
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCeeEEEEccce
Q 007595 264 ADSFAAR-----------------------EIATRLRVSKAKGIFTQDFI 290 (597)
Q Consensus 264 ~p~~~~~-----------------------~l~~~l~~~~~~~vl~~~~~ 290 (597)
+ +.+. ++...+++.++.++++.+.+
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 3 3333 66668899999999887653
No 60
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=66.30 E-value=23 Score=37.51 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=67.9
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++. . +-.+|.+.+...+... ....++.++|++...++-+.... ..+++++..|+..+..+.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV-VALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEcCC
Confidence 467777653 1 1257887775444333 34568999999998888775543 346788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSL 455 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~ 455 (597)
....+++...++..++.++.....+
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7778899999999999998877654
No 61
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=66.14 E-value=21 Score=37.33 Aligned_cols=94 Identities=7% Similarity=-0.073 Sum_probs=68.0
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++.. | ..+|++.+...+... ....++.++|++...++-+...- ..+++++..|+..+..+.
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP-VAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH-HHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCceEEecCc
Confidence 4577776521 1 347887775444333 34568999999998888776543 336788999999998877
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSLVK 457 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~ 457 (597)
...+.++...+++.++..++..+....
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 132 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQ 132 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhh
Confidence 777788999999999999888766543
No 62
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=65.11 E-value=23 Score=37.27 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=66.2
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHH---HhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++- + +-.+|.+.+...+.. .....++.++|++...++-+...- ..+++++..|+..+..+.
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY-IVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHhCcEEecCCC
Confidence 567788763 1 345788877544433 334568999999998888775543 336788999998887776
Q ss_pred CCChhhHHHHHHHcCCeEEEecH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVP 453 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~P 453 (597)
.....++...+++.++.++...+
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 66778899999999999988765
No 63
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=64.56 E-value=30 Score=39.45 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=70.0
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHH---HhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++. +.+| ..+|++.+...+.. .....++.++|++...++-+...- ..+++++..|+..+..+.
T Consensus 74 ~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~-v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFV-LSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHH-HHHHHHHHcCCEEEeeCC
Confidence 567888664 2222 35788776544433 334568999999998888775433 346788999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSLV 456 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~l 456 (597)
...++++...+++.++.+++..+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 77888999999999999998876543
No 64
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=63.98 E-value=22 Score=37.52 Aligned_cols=84 Identities=6% Similarity=-0.071 Sum_probs=63.3
Q ss_pred EEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEE
Q 007595 374 IPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLG 450 (597)
Q Consensus 374 V~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~ 450 (597)
..+|++.+...+... ....++.++|++...++-+..... .+++++..|+..+..+.....+++...++..++.+++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~-~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFI-PVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHH-HHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH-HHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 357887775544433 344689999999998887765443 4678899999999888777788999999999999998
Q ss_pred ecHHHHHH
Q 007595 451 TVPSLVKA 458 (597)
Q Consensus 451 ~~Ps~l~~ 458 (597)
+.+.....
T Consensus 130 ~~~~~~~~ 137 (548)
T 2d1s_A 130 SSKKGLDK 137 (548)
T ss_dssp ECTTTHHH
T ss_pred EcHHHHHH
Confidence 87654433
No 65
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=63.10 E-value=28 Score=36.27 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=69.3
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++.- | +...+|.+.+...+... ....++.++|++...++-+..... .+++++..|+..+..+.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~-~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCC-LFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH-HHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHH-HHHHHHHhCcEEEecCc
Confidence 4577776642 1 12468888775444333 345689999999998887755433 36788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSLV 456 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~l 456 (597)
....+++..+++..++.++...+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 77788899999999999998776543
No 66
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=60.44 E-value=50 Score=34.58 Aligned_cols=90 Identities=12% Similarity=0.008 Sum_probs=65.5
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++- + +..+|.+.+...+... ....++.++|++...++-+.... ..+++++..|+..+..+.
T Consensus 38 ~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 107 (539)
T 1mdb_A 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF-EVIFALFRLGALPVFALP 107 (539)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCeEEecCCC
Confidence 356777653 1 2457887775444333 34568999999999888775543 346788999999888776
Q ss_pred CCChhhHHHHHHHcCCeEEEecH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVP 453 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~P 453 (597)
.....++...++..++..++..+
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 108 SHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCHHHHHHHHHhCCCCEEEecc
Confidence 66778899999999999988765
No 67
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=59.06 E-value=4.1 Score=43.54 Aligned_cols=31 Identities=35% Similarity=0.379 Sum_probs=26.4
Q ss_pred CCCCCeEEEEecCCCC-CCceEEEeCCchHHH
Q 007595 353 RPVDSVINILFSSGTT-GEPKAIPWTQLSPIR 383 (597)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~th~~l~~ 383 (597)
..++.+.++.-||||| |+||-+.+|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 4567778999999999 889999999987644
No 68
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=57.89 E-value=26 Score=36.27 Aligned_cols=78 Identities=8% Similarity=-0.020 Sum_probs=59.1
Q ss_pred EeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEecH
Q 007595 375 PWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVP 453 (597)
Q Consensus 375 ~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P 453 (597)
.+|++.+...+......+.-.++|++...++-+...- ..+++++..|+..+..+....+.++...++..+++++.+..
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSI-ILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHHHH-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESS
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcc
Confidence 5788887666555544433338999998888775543 34678899999999988777788999999999999887653
No 69
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=57.10 E-value=33 Score=35.67 Aligned_cols=89 Identities=11% Similarity=-0.054 Sum_probs=63.8
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++. . +-.+|.+.+...+... ....++.++|++...++-+... +..+++++..|+..+..+.
T Consensus 14 ~p~~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~-~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVW-R--------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEM-IINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEe-C--------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCC
Confidence 457777653 1 1247887775444333 3446788999988887766543 3346788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEec
Q 007595 431 SPLERSFGKFVQDSGVSVLGTV 452 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~ 452 (597)
....+++..+++..++..+...
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 7778899999999999888764
No 70
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=51.08 E-value=80 Score=33.09 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=65.5
Q ss_pred CCCCeEEEEecCCCCCCce--EEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEee
Q 007595 354 PVDSVINILFSSGTTGEPK--AIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALY 428 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PK--gV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~ 428 (597)
.|+.+|++.. .|..+..+ +-.+|++.+...+... ....++ ++|++...++-+...-. .+++++..|+..+..
T Consensus 33 ~p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~-~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFA-IIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHH-HHHHHHHTTCEEEEC
T ss_pred CCCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHH-HHHHHHHhCCEEEec
Confidence 4677876643 33333332 3567888775444333 234566 79999988887765433 367889999999988
Q ss_pred CCCCChhhHHHHHHHcCCeEEEecH
Q 007595 429 HGSPLERSFGKFVQDSGVSVLGTVP 453 (597)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~~~~~P 453 (597)
+......++...++..++.+++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 7777788899999999998877653
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=48.42 E-value=43 Score=34.84 Aligned_cols=78 Identities=9% Similarity=-0.092 Sum_probs=58.9
Q ss_pred EeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEe
Q 007595 375 PWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 451 (597)
Q Consensus 375 ~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~ 451 (597)
.+|.+.+...+... ....++.++|++...++-+...- ..+++++..|+..+..+....++++..+++..++..+..
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDML-ATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHH-HHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 47887775444433 34568899999888887765433 346788999999998877777889999999999998886
Q ss_pred cH
Q 007595 452 VP 453 (597)
Q Consensus 452 ~P 453 (597)
..
T Consensus 108 ~~ 109 (521)
T 3l8c_A 108 IE 109 (521)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 72
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=46.24 E-value=76 Score=33.26 Aligned_cols=86 Identities=8% Similarity=-0.060 Sum_probs=62.8
Q ss_pred EEEeCCchHHHHHHHH---hhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCCCC-------hhhHHHHHH
Q 007595 373 AIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPL-------ERSFGKFVQ 442 (597)
Q Consensus 373 gV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~-------~~~l~~~i~ 442 (597)
+-.+|++.+...+... ....++.++|++...++-+.... ..+++++..|+..+..+.... ..++...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFV-EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 4568888775544433 34568999999999888776543 346788999999888864433 467888999
Q ss_pred HcCCeEEEecHHHHHHH
Q 007595 443 DSGVSVLGTVPSLVKAW 459 (597)
Q Consensus 443 ~~~vt~~~~~Ps~l~~l 459 (597)
..++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999887655544
No 73
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=44.78 E-value=72 Score=34.01 Aligned_cols=89 Identities=15% Similarity=0.022 Sum_probs=65.1
Q ss_pred CCCeEEEEecCCCCCCceEEEeCCchHHHHHHH---HhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCC
Q 007595 355 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS 431 (597)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~ 431 (597)
|+.+|.+- | +-.+|.+.+...+.. .....++.++|++..+++-+...-. .+++.+..|+..+..+..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vv-a~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYI-TFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH-HHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHH-HHHHHHhcCeEEccCCcc
Confidence 57777652 1 235788777544433 3345689999999998887755433 367899999998888766
Q ss_pred CChhhHHHHHHHcCCeEEEecH
Q 007595 432 PLERSFGKFVQDSGVSVLGTVP 453 (597)
Q Consensus 432 ~~~~~l~~~i~~~~vt~~~~~P 453 (597)
....++...++..++.++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 6778899999999999888764
No 74
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=43.70 E-value=7 Score=41.56 Aligned_cols=31 Identities=39% Similarity=0.423 Sum_probs=25.7
Q ss_pred CCCCCeEEEEecCCCC-CCceEEEeCCchHHH
Q 007595 353 RPVDSVINILFSSGTT-GEPKAIPWTQLSPIR 383 (597)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~th~~l~~ 383 (597)
..++.+.+..-||||| |++|-+.+|...+-.
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 4556678999999999 889999999987643
No 75
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=42.66 E-value=68 Score=33.17 Aligned_cols=89 Identities=12% Similarity=-0.040 Sum_probs=62.5
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHHHhh----hcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG----HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~ 429 (597)
.|+.+|++- + +-.+|.+.+...+..... ..+..+++++...++-+... +..+++++..|+..+..+
T Consensus 14 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~ 83 (511)
T 3e7w_A 14 YPQTDAFRS---Q------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHM-IVSFLGSVKAGHPYIPVD 83 (511)
T ss_dssp STTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHH-HHHHHHHHHHTCCEEEEE
T ss_pred CCCCeEEEc---C------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHH-HHHHHHHHHhCCEEEecC
Confidence 456777542 1 245888887655544433 24566778887777655433 334678899999999888
Q ss_pred CCCChhhHHHHHHHcCCeEEEec
Q 007595 430 GSPLERSFGKFVQDSGVSVLGTV 452 (597)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~~~~~ 452 (597)
.....+++...++..+++++...
T Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~ 106 (511)
T 3e7w_A 84 LSIPSERIAKIIESSGAELLIHA 106 (511)
T ss_dssp TTSCHHHHHHHHHHHTCCEEEES
T ss_pred CCChHHHHHHHHHhCCCCEEEec
Confidence 77778899999999999988863
No 76
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=41.34 E-value=8.4 Score=41.00 Aligned_cols=31 Identities=29% Similarity=0.526 Sum_probs=25.7
Q ss_pred CCCCCeEEEEecCCCC-CCceEEEeCCchHHH
Q 007595 353 RPVDSVINILFSSGTT-GEPKAIPWTQLSPIR 383 (597)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~th~~l~~ 383 (597)
..++.+.+..-||||| |++|-+.+|...+-.
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 4566677999999999 789999999987643
No 77
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=40.69 E-value=89 Score=30.59 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=60.1
Q ss_pred eecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCeeEEEEc
Q 007595 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287 (597)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~~~~~l~~~l~~~~~~~vl~~ 287 (597)
+=||++-- ..+.+.....+. +++|.+..+....+-.-+..-+++.+.|.-++.+-|...+......++..++++++++
T Consensus 62 tGSfK~Rg-A~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~ 140 (344)
T 3vc3_A 62 TASIADRP-AYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTD 140 (344)
T ss_dssp TSBTTHHH-HHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEEC
T ss_pred CCCcHHHH-HHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEEC
Confidence 34555422 235566666666 8888877778878888888889999999988888787777777788999999999986
Q ss_pred c
Q 007595 288 D 288 (597)
Q Consensus 288 ~ 288 (597)
.
T Consensus 141 ~ 141 (344)
T 3vc3_A 141 P 141 (344)
T ss_dssp G
T ss_pred C
Confidence 5
No 78
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=40.13 E-value=85 Score=33.55 Aligned_cols=89 Identities=7% Similarity=-0.162 Sum_probs=64.5
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHHH---HhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|++- . +-.+|++.+...+.. .....++.++|++..+++-+...- ..+++.+..|+..+..+.
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-va~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESI-TCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCc
Confidence 467777653 1 124788777544433 334568999999998888775543 336788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEec
Q 007595 431 SPLERSFGKFVQDSGVSVLGTV 452 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~ 452 (597)
....+++..++++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 6677889999999999988744
No 79
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=40.00 E-value=67 Score=33.22 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=58.1
Q ss_pred EEeCCchHHHHHHHHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCCCCChhhHHHHHHHcCCeEEEecH
Q 007595 374 IPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVP 453 (597)
Q Consensus 374 V~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P 453 (597)
-.+|.+.+...+......+ ..++++...++-+.... ..+++++..|+..+..+.....+++..++++.++.++...+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~~~-~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAMETG-VAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHHHH-HHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 4688888877776665544 46788888887765543 34678899999999988777788999999999999998865
Q ss_pred H
Q 007595 454 S 454 (597)
Q Consensus 454 s 454 (597)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 3
No 80
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=35.17 E-value=1.3e+02 Score=29.20 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=54.2
Q ss_pred ecHHHHHHHHHHHHHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCeeEEEEcc
Q 007595 210 MTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (597)
Q Consensus 210 lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~~~~~l~~~l~~~~~~~vl~~~ 288 (597)
-|++.-.. ...+.....+- +++|+.|.+....+-.-...-+++.+.|.-++.+-|...+......++..++++++++.
T Consensus 48 GSfK~R~a-~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 48 ASVKDRLG-FAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp SBTHHHHH-HHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred cCcHHHHH-HHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 35655422 23344444444 78899865555667777777888888898877666665555666778899999999975
Q ss_pred c
Q 007595 289 F 289 (597)
Q Consensus 289 ~ 289 (597)
.
T Consensus 127 ~ 127 (334)
T 3tbh_A 127 A 127 (334)
T ss_dssp G
T ss_pred C
Confidence 3
No 81
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=32.60 E-value=2.7e+02 Score=24.90 Aligned_cols=89 Identities=7% Similarity=-0.113 Sum_probs=51.6
Q ss_pred CEEEEecCc--hhhhhHHHHHHHH-HhCCeEEeeCCCCChhhHHHHHHHcCCeEEEe------cHHH--HHHHHhcCccC
Q 007595 398 DVYCWPTNL--GWVMGPIILFSSF-LSGAALALYHGSPLERSFGKFVQDSGVSVLGT------VPSL--VKAWKNTNCLQ 466 (597)
Q Consensus 398 d~~l~~~~~--~~~~~~~~i~~~L-~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~------~Ps~--l~~l~~~~~~~ 466 (597)
.+++..++. .|+.|...+-..| .+|..++....+..++.+.+.+.++++.++.+ ++++ +..+.+.-...
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 345444433 3888876543333 46666665554667889999999999997777 2322 22222211111
Q ss_pred CCCC-CCccEEEeeCCCCCcchHH
Q 007595 467 GLDW-TKIRSFASTGETSNVDDDL 489 (597)
Q Consensus 467 ~~~l-~sLr~v~~gGe~l~~~~~~ 489 (597)
. + ..++ +++||.+++++..+
T Consensus 173 ~--~~~~v~-v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 173 K--LRDSVK-CMFGGAPVSDKWIE 193 (215)
T ss_dssp T--CGGGSE-EEEESSSCCHHHHH
T ss_pred C--CCCCCE-EEEECCCCCHHHHH
Confidence 1 1 1233 78899999865433
No 82
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=30.72 E-value=1.5e+02 Score=28.65 Aligned_cols=62 Identities=23% Similarity=0.175 Sum_probs=39.4
Q ss_pred cCCCCEEEEECCCCH------HHHHHHHHHH-HcCCEEEecCC------------CCCHHHHHHHHHhcCeeEEEEccce
Q 007595 230 FSKGDAIAIDMPMTV------HAVIIYLAII-LAGYVVVSIAD------------SFAAREIATRLRVSKAKGIFTQDFI 290 (597)
Q Consensus 230 v~~gd~Vai~~~~s~------e~i~a~LA~~-k~Ga~~vpl~p------------~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (597)
+++||+|+|+.|.+. +.+-.-+..+ ..|.-++.-.. ....+++..+++|-++++|+|...-
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 789999999999752 3333333333 34655543221 1234566677888999999998654
Q ss_pred e
Q 007595 291 L 291 (597)
Q Consensus 291 ~ 291 (597)
.
T Consensus 89 ~ 89 (327)
T 4h1h_A 89 F 89 (327)
T ss_dssp S
T ss_pred h
Confidence 3
No 83
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=25.55 E-value=1.7e+02 Score=34.56 Aligned_cols=92 Identities=15% Similarity=0.029 Sum_probs=66.8
Q ss_pred CCCCeEEEEecCCCCCCceEEEeCCchHHHHHH---HHhhhcCCCCCCEEEEecCchhhhhHHHHHHHHHhCCeEEeeCC
Q 007595 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (597)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~th~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 430 (597)
.|+.+|.+ +. +-.+|.+.+...+. ......++++++++..+++-+...-+ .+++.+.+|+..|..+.
T Consensus 477 ~p~~~Av~-~~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv-~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALT-YS--------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVI-GILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEE-SS--------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHH-HHHHHHHTTCEEEECCT
T ss_pred CCCCeEEE-EC--------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHH-HHHHHHHHCCEEEEECC
Confidence 46777754 31 12478877644443 33345689999999998887765443 36788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEEecHHH
Q 007595 431 SPLERSFGKFVQDSGVSVLGTVPSL 455 (597)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~~~~~Ps~ 455 (597)
....+++..+++..++.++.+.+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 6677889999999999998876654
No 84
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.88 E-value=2.2e+02 Score=27.62 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=40.3
Q ss_pred cCCCCEEEEECCCCH------HHHHHHHHHHH-cCCEEEecCC---------CC---CHHHHHHHHHhcCeeEEEEccce
Q 007595 230 FSKGDAIAIDMPMTV------HAVIIYLAIIL-AGYVVVSIAD---------SF---AAREIATRLRVSKAKGIFTQDFI 290 (597)
Q Consensus 230 v~~gd~Vai~~~~s~------e~i~a~LA~~k-~Ga~~vpl~p---------~~---~~~~l~~~l~~~~~~~vl~~~~~ 290 (597)
+++||+|+|+.|.+. +.+-.-+..++ .|.-++.-.. .. ..+++...++|-++++|+|...-
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 789999999998864 33434444454 5666553321 11 33455567778899999998654
Q ss_pred e
Q 007595 291 L 291 (597)
Q Consensus 291 ~ 291 (597)
.
T Consensus 89 ~ 89 (331)
T 4e5s_A 89 Y 89 (331)
T ss_dssp S
T ss_pred c
Confidence 3
No 85
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=24.66 E-value=2.5e+02 Score=29.13 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=39.6
Q ss_pred EEEEecCchhhhhH--HHHHHHHHhCCeEEeeCCCCCh---hhHHHHHHHcC-----CeEEEecHHHHHHHHhc
Q 007595 399 VYCWPTNLGWVMGP--IILFSSFLSGAALALYHGSPLE---RSFGKFVQDSG-----VSVLGTVPSLVKAWKNT 462 (597)
Q Consensus 399 ~~l~~~~~~~~~~~--~~i~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~-----vt~~~~~Ps~l~~l~~~ 462 (597)
+++..+|..|-..+ +.+..+|.+|.++|+-+....| ..+.+++.+.+ ++++.........|.++
T Consensus 165 VV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~ 238 (521)
T 4e4g_A 165 IGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTH 238 (521)
T ss_dssp EEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTC
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhC
Confidence 55666666665443 4577889999999997644433 35667777764 23333334455666654
No 86
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=24.18 E-value=4.8e+02 Score=25.26 Aligned_cols=143 Identities=11% Similarity=-0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEECCCCHH-HHHHHHHHHHcCCEEEecCCCC--CHHHHHHHHHhcCeeEEEEccceeccCc
Q 007595 219 VMLVANALDTMFSKGDAIAIDMPMTVH-AVIIYLAIILAGYVVVSIADSF--AAREIATRLRVSKAKGIFTQDFILRGGR 295 (597)
Q Consensus 219 a~~lA~~L~~~v~~gd~Vai~~~~s~e-~i~a~LA~~k~Ga~~vpl~p~~--~~~~l~~~l~~~~~~~vl~~~~~~~~~~ 295 (597)
+..+...+...+++||.|.+.-+.... .+...+....+-.+++|+++.. ..+.+...++..++++|+...-.-..+.
T Consensus 72 t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~ 151 (416)
T 3isl_A 72 RAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGR 151 (416)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCce
Q ss_pred cccchhhHHhcCCCeEEEEecCCCccccccccCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEecCCCC---CCce
Q 007595 296 KFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTT---GEPK 372 (597)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTT---G~PK 372 (597)
..+ ++++.+.+...-+.+..++. .............+.-+++++..-+ +.+-
T Consensus 152 ~~~-l~~i~~l~~~~~~~li~D~a------------------------~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~ 206 (416)
T 3isl_A 152 IHP-LKAIGEACRTEDALFIVDAV------------------------ATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGM 206 (416)
T ss_dssp ECC-CHHHHHHHHHTTCEEEEECT------------------------TTTTTSCCCTTTTTCSEEECCSSSTTCCCSSE
T ss_pred ecC-HHHHHHHHHHcCCEEEEECC------------------------ccccCCCcchhhcCCCEEEecCccccCCCCCe
Q ss_pred EEEeCCchHHHHHH
Q 007595 373 AIPWTQLSPIRCAA 386 (597)
Q Consensus 373 gV~~th~~l~~~~~ 386 (597)
|+++....++..+.
T Consensus 207 g~~~~~~~~~~~~~ 220 (416)
T 3isl_A 207 APITYNERVADVIA 220 (416)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEECHHHHHHhh
No 87
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=24.00 E-value=3.1e+02 Score=27.50 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=33.2
Q ss_pred cCCCCEEEEECCCCHHHHHHHH-HHHHcCCEEEecCCCCCHHHHHHHHHhcCeeEEEEc
Q 007595 230 FSKGDAIAIDMPMTVHAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287 (597)
Q Consensus 230 v~~gd~Vai~~~~s~e~i~a~L-A~~k~Ga~~vpl~p~~~~~~l~~~l~~~~~~~vl~~ 287 (597)
+++||.|.+.-+.-......+- .+.+.|+.++.++.. ..+.++..++. +.++|+.+
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e 174 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLE 174 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEE
Confidence 6788887665554444333332 455677777766655 55666666643 56666654
No 88
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=23.98 E-value=2.1e+02 Score=28.04 Aligned_cols=62 Identities=15% Similarity=0.012 Sum_probs=41.6
Q ss_pred HHHHHhh-cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCC-----CCCHHHHHHHHHhcC--eeEEEEc
Q 007595 223 ANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD-----SFAAREIATRLRVSK--AKGIFTQ 287 (597)
Q Consensus 223 A~~L~~~-v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p-----~~~~~~l~~~l~~~~--~~~vl~~ 287 (597)
...|... +++||.|.+-.+.-+... -++...|+.++.++. ....+.+...+...+ .++|+..
T Consensus 67 ~~al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 67 MAAIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 3445666 899999988876655443 346678987665543 246788888774444 7777744
No 89
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.17 E-value=1.8e+02 Score=28.67 Aligned_cols=62 Identities=15% Similarity=0.032 Sum_probs=40.1
Q ss_pred cCCCCEEEEECCCCH------HHHHHHHHHHH-cCCEEEecCC---------C---CCHHHHHHHHHhcCeeEEEEccce
Q 007595 230 FSKGDAIAIDMPMTV------HAVIIYLAIIL-AGYVVVSIAD---------S---FAAREIATRLRVSKAKGIFTQDFI 290 (597)
Q Consensus 230 v~~gd~Vai~~~~s~------e~i~a~LA~~k-~Ga~~vpl~p---------~---~~~~~l~~~l~~~~~~~vl~~~~~ 290 (597)
+++||+|+|+.|.++ +.+-.-+..++ .|.-++.-.. . ...+++..+++|-++++|+|...-
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 899999999999874 33333344444 5666553321 1 133455566778899999998654
Q ss_pred e
Q 007595 291 L 291 (597)
Q Consensus 291 ~ 291 (597)
.
T Consensus 120 y 120 (371)
T 3tla_A 120 D 120 (371)
T ss_dssp S
T ss_pred c
Confidence 3
No 90
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=22.74 E-value=1.2e+02 Score=25.37 Aligned_cols=52 Identities=13% Similarity=-0.027 Sum_probs=37.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCeeEE
Q 007595 232 KGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (597)
Q Consensus 232 ~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~~~~~~l~~~l~~~~~~~v 284 (597)
+=|.|.|+.|. ....-++..|.++|.-.+.+++....+++...++..+.+++
T Consensus 70 ~~Dlvii~vp~-~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 70 KVDMVDVFRNS-EAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CCSEEECCSCS-THHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 34778888773 44455555677788766777787778888888888888765
No 91
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=22.23 E-value=3.5e+02 Score=25.81 Aligned_cols=58 Identities=7% Similarity=-0.037 Sum_probs=39.0
Q ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCC--C--CCHHHHHHHHHhcCeeEEEEcc
Q 007595 230 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIAD--S--FAAREIATRLRVSKAKGIFTQD 288 (597)
Q Consensus 230 v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p--~--~~~~~l~~~l~~~~~~~vl~~~ 288 (597)
.++||.|.+.-+..+.+...+.++...|+.++.++. + ...+.+...++. ++++|+...
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 147 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMA 147 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEES
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEEC
Confidence 478999988777666655555555667887665543 2 457788877764 677777654
No 92
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=21.89 E-value=3.1e+02 Score=28.10 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=38.7
Q ss_pred EEEEecCchhhhhH--HHHHHHHHhCCeEEeeCCCCCh---hhHHHHHHHcC-----CeEEEecHHHHHHHHhc
Q 007595 399 VYCWPTNLGWVMGP--IILFSSFLSGAALALYHGSPLE---RSFGKFVQDSG-----VSVLGTVPSLVKAWKNT 462 (597)
Q Consensus 399 ~~l~~~~~~~~~~~--~~i~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~-----vt~~~~~Ps~l~~l~~~ 462 (597)
+++..+|..|-..+ +.+..+|.+|.++++-+....+ ..+.+++.+.+ ++++...+..-..|..+
T Consensus 142 Vv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~ 215 (490)
T 3ju8_A 142 VVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAH 215 (490)
T ss_dssp EEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTC
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhC
Confidence 66666776665443 4567889999999997644433 34566676653 23333334555566654
No 93
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=21.88 E-value=3.3e+02 Score=26.19 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=40.2
Q ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCC-------CCHHHHHHHHHhcCeeEEEEcc
Q 007595 230 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFTQD 288 (597)
Q Consensus 230 v~~gd~Vai~~~~s~e~i~a~LA~~k~Ga~~vpl~p~-------~~~~~l~~~l~~~~~~~vl~~~ 288 (597)
+++||.|.+.-+.-..+. -++...|+.++.++.. ...+.+...+++.++++|+...
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 679999988776665533 3456778877766542 6789999999867888876543
No 94
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=20.67 E-value=3.2e+02 Score=28.03 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=45.5
Q ss_pred CEEEEecCchhhhhH--HHHHHHHHhCCeEEeeCCCCCh---hhHHHHHHHcCC-----eEEEecHHHHHHHHhcCccCC
Q 007595 398 DVYCWPTNLGWVMGP--IILFSSFLSGAALALYHGSPLE---RSFGKFVQDSGV-----SVLGTVPSLVKAWKNTNCLQG 467 (597)
Q Consensus 398 d~~l~~~~~~~~~~~--~~i~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~v-----t~~~~~Ps~l~~l~~~~~~~~ 467 (597)
-+++..+|..|-..+ +.+..+|.+|.++++-+....| ..+.+++.+.+. +++......-..|.+++
T Consensus 143 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~---- 218 (486)
T 1t90_A 143 GVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHP---- 218 (486)
T ss_dssp SEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCT----
T ss_pred CEEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhCC----
Confidence 467777777765443 5577889999999997644333 356777777632 23333334455565542
Q ss_pred CCCCCccEEEeeCC
Q 007595 468 LDWTKIRSFASTGE 481 (597)
Q Consensus 468 ~~l~sLr~v~~gGe 481 (597)
.++.|.+.|.
T Consensus 219 ----~v~~I~fTGS 228 (486)
T 1t90_A 219 ----EIKAISFVGS 228 (486)
T ss_dssp ----TEEEEEEESC
T ss_pred ----CCCEEEEeCC
Confidence 3555555554
No 95
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=20.65 E-value=1.6e+02 Score=28.56 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=39.9
Q ss_pred cCCCCEEEEECCCCH------HHHHHHHHHHH-cCCEEEecCC---------C---CCHHHHHHHHHhcCeeEEEEccce
Q 007595 230 FSKGDAIAIDMPMTV------HAVIIYLAIIL-AGYVVVSIAD---------S---FAAREIATRLRVSKAKGIFTQDFI 290 (597)
Q Consensus 230 v~~gd~Vai~~~~s~------e~i~a~LA~~k-~Ga~~vpl~p---------~---~~~~~l~~~l~~~~~~~vl~~~~~ 290 (597)
+++||+|+|+.|.++ +.+-.-+..++ .|.-++.-.. . ...+++..+++|-++++|+|...-
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 89 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGG 89 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 799999999999883 33333344444 5766553211 1 133455567778899999998654
Q ss_pred e
Q 007595 291 L 291 (597)
Q Consensus 291 ~ 291 (597)
.
T Consensus 90 ~ 90 (336)
T 3sr3_A 90 M 90 (336)
T ss_dssp S
T ss_pred c
Confidence 3
Done!