BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007597
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A
With Amp And Glucose
Length = 842
Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/571 (46%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 26 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 85
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 86 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 145
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI+ Q E A+DWL +PWE R + PV F+G
Sbjct: 146 DSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 205
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 206 HVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 263
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 264 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 323
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E + WD+AWD+T RT AYTNHTVLPE
Sbjct: 324 RTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWDKAWDVTVRTCAYTNHTVLPE 383
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 384 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 442
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 443 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 502
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
+I + + D ++++LD L L F D+ + K +K A Y+ R V I+PN
Sbjct: 503 VIAERIGED-FISDLDQLRKLLSFVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 561
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFDIQVKRIHEYKRQLLN L I Y ++K
Sbjct: 562 SLFDIQVKRIHEYKRQLLNCLHVITLYNRIK 592
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone
Derivatives To Glycogen Phosphorylase: A New Class Of
Inhibitors
Length = 841
Score = 495 bits (1275), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 24 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 83
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 84 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 143
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 144 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 203
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 204 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 261
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 262 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 321
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 322 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 381
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 382 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 440
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 441 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 500
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 501 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 559
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 560 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 590
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucose At 100 K
pdb|2PYI|A Chain A, Crystal Structure Of Glycogen Phosphorylase In Complex
With Glucosyl Triazoleacetamide
pdb|3L79|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk1 Complex
pdb|3L7A|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk2 Complex
pdb|3L7B|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk3 Complex
pdb|3L7C|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk4 Complex
pdb|3L7D|A Chain A, Crystal Structure Of Glycogen Phosphorylase Dk5 Complex
Length = 843
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 26 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 85
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 86 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 145
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 146 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 205
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 206 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 263
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 264 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 323
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 324 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 383
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 384 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 442
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 443 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 502
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 503 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 561
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 562 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 592
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug And Caffeine
pdb|1LWN|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|1LWO|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
A In Complex With A Potential Hypoglycaemic Drug At 2.0
A Resolution
pdb|3AMV|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
pdb|2GPA|A Chain A, Allosteric Inhibition Of Glycogen Phosphorylase A By A
Potential Antidiabetic Drug
Length = 842
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 25 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 84
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 85 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 144
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 145 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 204
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 205 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 262
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 263 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 323 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 382
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 383 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 441
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 442 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 501
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 502 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 560
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 561 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 591
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab
Complex
pdb|2G9R|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol
pdb|2G9U|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r,
4r,5r)-5-Hydroxymethyl-1-(3-Phenylpropyl)-Piperidine-3,
4-Diol And Phosphate
pdb|2G9V|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex
With (3r, 4r,5r)-5-Hydroxymethylpiperidine-3,4-Diol And
Phosphate
pdb|2OFF|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With A Potent Allosteric Inhibitor
pdb|2QN1|A Chain A, Glycogen Phosphorylase B In Complex With Asiatic Acid
pdb|2QN2|A Chain A, Glycogen Phosphorylase B In Complex With Maslinic Acid
pdb|2QLM|A Chain A, Glycogen Phosphorylase In Complex With Fn67
pdb|2QLN|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Phenylbenzoyl- N'-Beta-D-Glucopyranosyl Urea
pdb|2QN3|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Chlorobenzoyl-N- Beta-D-Glucopyranosyl Urea
pdb|2QNB|A Chain A, Glycogen Phosphorylase B In Complex With
N-Benzoyl-N'-Beta- D-Glucopyranosyl Urea
pdb|2QRM|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Nitrophenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,
5'-Isoxazoline]
pdb|2QRP|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(2-
Naphthyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|2QRQ|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methylphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRG|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-(4-
Methoxyphenyl)-Spiro[1,5-Anhydro-D-Glucitol-1,5'-
Isoxazoline]
pdb|2QRH|A Chain A, Glycogen Phosphorylase B In Complex With (1r)-3'-
Phenylspiro[1,5-Anhydro-D-Glucitol-1,5'-Isoxazoline]
pdb|3BCR|A Chain A, Glycogen Phosphorylase B In Complex With Azt
pdb|3BCS|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Uracil
pdb|3BCU|A Chain A, Glucogen Phosphorylase Complex With Thymidine
pdb|3BD6|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Ribofuranosyl)
Cyanuric Acid
pdb|3E3L|A Chain A, The R-state Glycogen Phosphorylase
pdb|3E3L|B Chain B, The R-state Glycogen Phosphorylase
pdb|3E3L|C Chain C, The R-state Glycogen Phosphorylase
pdb|3E3L|D Chain D, The R-state Glycogen Phosphorylase
pdb|3CUT|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamide
pdb|3CUU|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3CUV|A Chain A, Tracking Structure Activity Relationships Of Glycogen
Phosphorylase Inhibitors: Synthesis, Kinetic And
Crystallographic Evaluation Of Analogues Of N-(-D-
Glucopyranosyl)-N'-Oxamides
pdb|3CUW|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With N-(-D-Glucopyranosyl)-N'-(2-Naphthyl)oxamides
pdb|3E3N|A Chain A, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|B Chain B, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|C Chain C, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|D Chain D, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|E Chain E, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|F Chain F, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|G Chain G, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3E3N|H Chain H, The Glycogen Phosphorylase B R State- Amp Complex
pdb|3EBO|A Chain A, Glycogen Phosphorylase B/chrysin Complex
pdb|3EBP|A Chain A, Glycogen Phosphorylase B/flavopiridol Complex
pdb|3G2H|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2I|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2J|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2K|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazole
pdb|3G2L|A Chain A, Crystal Structure Of 1-(Beta-D-Glucopyranosyl)-4-
Substituted-1,2,3-Triazoles In Complex With Glycogen
Phosphorylase
pdb|3G2N|A Chain A, Crystal Structure Of N-Acylglucosylamine With Glycogen
Phosphorylase
pdb|3MQF|A Chain A, Glycogen Phosphorylase Complexed With
4-Fluorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MRT|A Chain A, Glycogen Phosphorylase Complexed With
4-Pyridinecarboxaldehyde-4- (Beta-D-Glucopyranosyl)
Thiosemicarbazone
pdb|3MRV|A Chain A, Glycogen Phosphorylase Complexed With
3-Hydroxybenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MRX|A Chain A, Glycogen Phosphorylase Complexed With
4-Methoxybenzaldehyde-4-(2,3,4,
6-Tetra-O-Acetyl-Beta-D-Glucopyranosyl)-
Thiosemicarbazone
pdb|3MS2|A Chain A, Glycogen Phosphorylase Complexed With
4-Methylbenzaldehyde-4-(Beta-D- Glucopyranosyl)
Thiosemicarbazone
pdb|3MS4|A Chain A, Glycogen Phosphorylase Complexed With
4-Trifluoromethylbenzaldehyde-4-
(Beta-D-Glucopyranosyl)-Thiosemicarbazone
pdb|3MS7|A Chain A, Glycogen Phosphorylase Complexed With
2-Chlorobenzaldehyde-4-(2,3,4,6-
Tetra-O-Acetyl-Beta-D-Glucopyranosyl) Thiosemicarbazone
pdb|3MT7|A Chain A, Glycogen Phosphorylase Complexed With
4-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT8|A Chain A, Glycogen Phosphorylase Complexed With
4-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MT9|A Chain A, Glycogen Phosphorylase Complexed With
4-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTA|A Chain A, Glycogen Phosphorylase Complexed With
3-Bromobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTB|A Chain A, Glycogen Phosphorylase Complexed With
3-Chlorobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MTD|A Chain A, Glycogen Phosphorylase Complexed With
4-Hydroxybenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3MSC|A Chain A, Glycogen Phosphorylase Complexed With
2-Nitrobenzaldehyde-4-(Beta-D-
Glucopyranosyl)-Thiosemicarbazone
pdb|3NP7|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-3-(Beta-D- Glucopyranosyl)-Chlorobenzene
And 2,5-Dihydroxy-4-(Beta-D-
Glucopyranosyl)-Chlorobenzene
pdb|3NP9|A Chain A, Glycogen Phosphorylase Complexed With
3-(Beta-D-Glucopyranosyl)-2-
Hydroxy-5-Methoxy-Chlorobenzene
pdb|3NPA|A Chain A, Glycogen Phosphorylase Complexed With
2,5-Dihydroxy-4-(Beta-D- Glucopyranosyl)-Bromo-Benzene
pdb|3S0J|A Chain A, The Crystal Structure Of Glycogen Phosphorylase B In
Complex With 2,5-
Dihydroxy-4-(Beta-D-Glucopyranosyl)-Chlorobenzene
pdb|3SYM|A Chain A, Glycogen Phosphorylase B In Complex With 3
-C-(Hydroxymethyl)-Beta-D- Glucopyranonucleoside Of
5-Fluorouracil
pdb|3SYR|A Chain A, Glycogen Phosphorylase B In Complex With
Beta-D-Glucopyranonucleoside 5-Fluorouracil
pdb|3T3D|A Chain A, Glycogen Phosphorylase B In Complex With Glcu
pdb|3T3E|A Chain A, Glycogen Phosphorylase B In Complex With Glcclu
pdb|3T3G|A Chain A, Glycogen Phosphorylase B In Complex With Glcbru
pdb|3T3H|A Chain A, Glycogen Phosphorylase B In Complex With Glciu
pdb|3T3I|A Chain A, Glycogen Phosphorylase B In Complex With Glccf3u
Length = 842
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 25 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 84
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 85 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 144
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 145 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 204
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 205 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 262
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 263 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 323 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 382
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 383 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 441
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 442 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 501
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 502 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 560
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 561 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 591
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10
pdb|4EKE|A Chain A, Crystal Structure Of Gpb In Complex With Dk11
pdb|4EKY|A Chain A, Crystal Structure Of Gpb In Complex With Dk15
pdb|4EL0|A Chain A, Crystal Structure Of Gpb In Complex With Dk16
pdb|4EL5|A Chain A, Crystal Structure Of Gpb In Complex With Dk12
Length = 825
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 14 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 73
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 74 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 133
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 134 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 193
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 194 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 251
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 252 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 311
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 312 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 371
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 372 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 430
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 431 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 490
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 491 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 549
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 550 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 580
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|B Chain B, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|C Chain C, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|1PYG|D Chain D, Structural Basis For The Activation Of Glycogen
Phosphorylase B By Adenosine Monophosphate
pdb|2AMV|A Chain A, The Structure Of Glycogen Phosphorylase B With An Alkyl-
Dihydropyridine-Dicarboxylic Acid
pdb|1E1Y|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1UZU|A Chain A, Glycogen Phosphorylase B In Complex With Indirubin-5'-
Sulphonate
pdb|1XC7|A Chain A, Binding Of Beta-D-Glucopyranosyl Bismethoxyphosphoramidate
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1XKX|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL0|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1XL1|A Chain A, Kinetic And Crystallographic Studies On
2-(Beta-D-Glucopyranosyl)-5-
Methyl-1,3,4-Oxadiazole,-Benzothiazole,
And-Benzimidazole, Inhibitors Of Muscle Glycogen
Phosphorylase B. Evidence For A New Binding Site.
pdb|1Z62|A Chain A, Indirubin-3'-aminooxy-acetate Inhibits Glycogen
Phosphorylase By Binding At The Inhibitor And The
Allosteric Site. Broad Specificities Of The Two Sites
pdb|2F3P|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)oxamic Acid Complex
pdb|2F3Q|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
METHYL-N-(Beta-D- Glucopyranosyl)oxamate Complex
pdb|2F3S|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
ETHYL-N- (Beta-D-Glucopyranosyl)oxamate Complex
pdb|2F3U|A Chain A, Crystal Structure Of The Glycogen Phosphorylase B
N-(Beta-D- Glucopyranosyl)-N'-Cyclopropyl Oxalamide
Complex
pdb|2FET|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|2FF5|A Chain A, Synthesis Of C-D-Glycopyranosyl-Hydroquinones
And-Benzoquinones. Inhibition Of Ptp1b. Inhibition Of
And Binding To Glycogen Phosphorylase In The Crystal
pdb|1AXR|A Chain A, Cooperativity Between Hydrogen-Bonding And Charge-Dipole
Interactions In The Inhibition Of Beta-Glycosidases By
Azolopyridines: Evidence From A Study With Glycogen
Phosphorylase B
pdb|1GPY|A Chain A, Crystallographic Binding Studies On The Allosteric
Inhibitor Glucose- 6-Phosphate To T State Glycogen
Phosphorylase B
pdb|3BD7|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Thymine
pdb|3BD8|A Chain A, Glucogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cytosine
pdb|3BDA|A Chain A, Glycogen Phosphorylase Complex With 1(-D-Glucopyranosyl)
Cyanuric Acid
Length = 842
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 25 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 84
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 85 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 144
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 145 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 204
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 205 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 262
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 263 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 323 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 382
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 383 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 441
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 442 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 501
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 502 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 560
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 561 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 591
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Thienopyrrole
Length = 825
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 14 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 73
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 74 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 133
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 134 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 193
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 194 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 251
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 252 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 311
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 312 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 371
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 372 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 430
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 431 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 490
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 491 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 549
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 550 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 580
>pdb|2FFR|A Chain A, Crystallographic Studies On
N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of
Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D-
Glucopyranosylamine
Length = 825
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 14 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 73
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 74 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 133
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 134 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 193
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 194 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 251
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 252 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPR 311
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 312 VTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 371
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 372 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 430
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 431 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 490
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 491 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 549
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 550 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 580
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In
Complex With Ligand
Length = 824
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 14 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 73
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 74 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 133
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 134 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 193
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 194 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 251
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 252 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 311
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTVLPE
Sbjct: 312 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 371
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 372 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 430
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 431 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 490
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 491 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 549
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 550 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 580
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex
pdb|1Z6Q|A Chain A, Glycogen Phosphorylase With Inhibitor In The Amp Site
pdb|1A8I|A Chain A, Spirohydantoin Inhibitor Of Glycogen Phosphorylase
pdb|2GPN|A Chain A, 100 K Structure Of Glycogen Phosphorylase At 2.0 Angstroms
Resolution
pdb|3E3O|A Chain A, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|B Chain B, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|C Chain C, Glycogen Phosphorylase R State-Imp Complex
pdb|3E3O|D Chain D, Glycogen Phosphorylase R State-Imp Complex
Length = 842
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 25 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 84
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 85 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 144
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 145 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 204
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 205 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 262
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 263 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTV+PE
Sbjct: 323 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPE 382
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 383 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 441
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 442 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 501
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 502 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 560
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 561 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 591
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|1GPA|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
Length = 842
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 25 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 84
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 85 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 144
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 145 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 204
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 205 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 262
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 263 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTV+PE
Sbjct: 323 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPE 382
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 383 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 441
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 442 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 501
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 502 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 560
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 561 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 591
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|B Chain B, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|C Chain C, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|7GPB|D Chain D, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|9GPB|A Chain A, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|B Chain B, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|C Chain C, The Allosteric Transition Of Glycogen Phosphorylase
pdb|9GPB|D Chain D, The Allosteric Transition Of Glycogen Phosphorylase
pdb|1B4D|A Chain A, Amidocarbamate Inhibitor Of Glycogen Phosphorylase
pdb|1BX3|A Chain A, Effects Of Commonly Used Cryoprotectants On Glycogen
Phosphorylase Activity And Structure
pdb|2PRI|A Chain A, Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen
Phosphorylase B
pdb|2PRJ|A Chain A, Binding Of N-Acetyl-Beta-D-Glucopyranosylamine To Glycogen
Phosphorylase B
pdb|2SKC|A Chain A, Pyridoxal Phosphorylase B In Complex With Fluorophosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKD|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphate,
Glucose And Inosine-5'-Monophosphate
pdb|2SKE|A Chain A, Pyridoxal Phosphorylase B In Complex With Phosphite,
Glucose And Inosine-5'-monophosphate
pdb|1C8K|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GFZ|A Chain A, Flavopiridol Inhibits Glycogen Phosphorylase By Binding At
The Inhibitor Site
pdb|1GG8|A Chain A, Design Of Inhibitors Of Glycogen Phosphorylase: A Study Of
Alpha-And Beta-C-Glucosides And 1-Thio-Beta-D-Glucose
Compounds
pdb|1FS4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTQ|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTW|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FTY|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU4|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU7|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1FU8|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1GGN|A Chain A, Structures Of Glycogen Phosphorylase-Inhibitor Complexes
And The Implications For Structure-Based Drug Design
pdb|1HLF|A Chain A, Binding Of Glucopyranosylidene-Spiro-Thiohydantoin To
Glycogen Phosphorylase B: Kinetic And Crystallographic
Stud
pdb|1H5U|A Chain A, The 1.76 A Resolution Crystal Structure Of Glycogen
Phosphorylase B Complexed With Glucose And Cp320626, A
Potential Antidiabetic Drug
pdb|1K06|A Chain A, Crystallographic Binding Study Of 100 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1K08|A Chain A, Crystallographic Binding Study Of 10 Mm
N-Benzoyl-N'-Beta-D- Glucopyranosyl Urea To Glycogen
Phosphorylase B
pdb|1KTI|A Chain A, Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea
To Glycogen Phosphorylase B: Kinetic And
Crystallographic Studies
pdb|1P29|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltopentaose
pdb|1P2B|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Maltoheptaose
pdb|1P2D|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Beta Cyclodextrin
pdb|1P2G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With Gamma Cyclodextrin
pdb|1P4G|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Azido-Alpha-D-Glucopyranosyl)formamide
pdb|1P4H|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Acetamido-alpha-d-glucopyranosyl) Formamide
pdb|1P4J|A Chain A, Crystal Structure Of Glycogen Phosphorylase B In Complex
With C-(1- Hydroxy-Beta-D-Glucopyranosyl)formamide
pdb|1WUT|A Chain A, Acyl Ureas As Human Liver Glycogen Phosphorylase
Inhibitors For The Treatment Of Type 2 Diabetes
pdb|1WUY|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV0|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogen Phosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WV1|A Chain A, Crystallographic Studies On Acyl Ureas, A New Class Of
Inhibitors Of Glycogenphosphorylase. Broad Specificity
Of The Allosteric Site
pdb|1WW2|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|1WW3|A Chain A, Crystallographic Studies On Two Bioisosteric Analogues,
N-Acetyl-Beta- D-Glucopyranosylamine And
N-Trifluoroacetyl-Beta-D- Glucopyranosylamine, Potent
Inhibitors Of Muscle Glycogen Phosphorylase
pdb|2IEG|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEG|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|A Chain A, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|2IEI|B Chain B, Crystal Structure Of Rabbit Muscle Glycogen Phosphorylase
In Complex With 3,4-Dihydro-2-Quinolone
pdb|1GPB|A Chain A, Glycogen Phosphorylase B: Description Of The Protein
Structure
pdb|2GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|3GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|4GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|5GPB|A Chain A, Comparison Of The Binding Of Glucose And
Glucose-1-Phosphate Derivatives To T-State Glycogen
Phosphorylase B
pdb|6GPB|A Chain A, Refined Crystal Structure Of The Phosphorylase-Heptulose
2-Phosphate- Oligosaccharide-Amp Complex
pdb|8GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By
Phosphorylation And Amp
pdb|2QN7|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-Hydroxybenzoyl-N'-4-Beta- D-Glucopyranosyl Urea
pdb|2QN8|A Chain A, Glycogen Phosphorylase B In Complex With
N-4-nitrobenzoyl-n'-beta-d- Glucopyranosyl Urea
pdb|2QN9|A Chain A, Glycogen Phosphorylase In Complex With
N-4-Aminobenzoyl-N'-Beta-D- Glucopyranosyl Urea
Length = 842
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 25 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 84
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 85 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 144
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 145 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 204
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 205 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 262
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 263 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTV+PE
Sbjct: 323 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPE 382
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 383 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 441
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 442 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 501
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 502 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 560
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 561 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 591
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|B Chain B, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|C Chain C, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
pdb|1ABB|D Chain D, Control Of Phosphorylase B Conformation By A Modified
Cofactor: Crystallographic Studies On R-State Glycogen
Phosphorylase Reconstituted With Pyridoxal
5'-Diphosphate
Length = 828
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 16 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 75
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 76 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 135
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 136 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 195
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 196 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 253
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 254 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 313
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTV+PE
Sbjct: 314 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPE 373
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 374 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 432
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 433 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 492
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 493 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 551
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 552 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 582
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|B Chain B, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|C Chain C, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOI|D Chain D, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
And R States
pdb|1NOJ|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
pdb|1NOK|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State
Analogue Nojirimycin Tetrazole And Phosphate In The T
State
Length = 842
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 25 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 84
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 85 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 144
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 145 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 204
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 205 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 262
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 263 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 322
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTV+PE
Sbjct: 323 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPE 382
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 383 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 441
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 442 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 501
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 502 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 560
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 561 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 591
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel
Allosteric Binding Site Of Glycogen Phosphorylase B
Length = 830
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/571 (45%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30 SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
+ + N + H+ ++ P +FA A +VRD L+ +W T H+ + DPK+ YY
Sbjct: 13 TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 72
Query: 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
LS+EF GRTL N + +L ++NA +A LG +EE+ E E+D +CFL
Sbjct: 73 LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 132
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
DSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE R + PV F+G
Sbjct: 133 DSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 192
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
V G KWV +VV A+ YD P+PGY+ ++RLW AKA DFNL FN G Y
Sbjct: 193 RVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 250
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I RFK K G
Sbjct: 251 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 310
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
+ FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T +T AYTNHTV+PE
Sbjct: 311 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVIPE 370
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
ALE+W ++ LLPRH++II EI++RF+ V + ++ M +++ K + M
Sbjct: 371 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 429
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
A+LC+ +H VNGVA++HS+ILK +F D+ L P+K QNKTNGITPRRWL CNP L++
Sbjct: 430 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 489
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
II + + ++++++LD L L + D+ + K +K A Y+ R V I+PN
Sbjct: 490 IIAERI-GEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 548
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
SLFD+QVKRIHEYKRQLLN L I Y ++K
Sbjct: 549 SLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 579
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 258/567 (45%), Positives = 359/567 (63%), Gaps = 32/567 (5%)
Query: 56 AFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNA--- 112
A+ A + S+RD L+ WN+T F DPK+ YYLS+EFL GR L NA+ ++ I++
Sbjct: 68 AYEAASMSIRDNLVIDWNKTQQKFTTRDPKRVYYLSLEFLMGRALDNALINMKIEDPEDP 127
Query: 113 ----------YADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGY 162
AL+ LG LE++ +QE D +CF+DSMAT +PAWGY
Sbjct: 128 AASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGY 187
Query: 163 GLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTR--- 219
GLRY YG+F QKI Q E + WL +PWE+ R++V PV F+G V P G +
Sbjct: 188 GLRYEYGIFAQKIIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYVD-RPEGGKTTL 246
Query: 220 ---KWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLH 276
+W+GGE V AVAYD P+PG+KT N +LRLW A+ + E F+L +FN+G Y+++
Sbjct: 247 SASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQARPTTE-FDLNKFNNGDYKNSVAQQ 305
Query: 277 SRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAV 336
RA+ I AVLYP D+ +GK LRLKQQ+F C+ASL D++ RFK KS R W+EFP +VA+
Sbjct: 306 QRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFK--KSKRPWTEFPDQVAI 363
Query: 337 QLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKL 396
QLNDTHPTLAI EL R+L+D E L W EAWDI T+T AYTNHTV+ EALEKW + + L
Sbjct: 364 QLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHL 423
Query: 397 LPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNG 456
LPRH+EII +I+ F+ V + + I++ N + +RMA L +V +H VNG
Sbjct: 424 LPRHLEIIYDINWFFLEDVAKKFPKDVDLLSRISIIEENSPERQIRMAFLAIVGSHKVNG 483
Query: 457 VAQLHSDILKADLFADYVSLW-PNKLQNKTNGITPRRWLRFCNPELSKIITKWLK--TDQ 513
V +LHS+++K +F D++ + P+K N TNGITPRRWL+ NP L+K+I++ L T++
Sbjct: 484 VVELHSELIKTTIFKDFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEE 543
Query: 514 WVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVT-GVTID-----PNSLFD 567
++ ++ L L ++ ++ E +W K+ +K L D I + GV I ++LFD
Sbjct: 544 YLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFD 603
Query: 568 IQVKRIHEYKRQLLNILGAIYRYKKLK 594
+QVKRIHEYKRQ LN+ G IYRY +K
Sbjct: 604 MQVKRIHEYKRQQLNVFGIIYRYLAMK 630
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 344/544 (63%), Gaps = 10/544 (1%)
Query: 57 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADA 116
+FA A +VRD L+ +W T H+ PK+ YYLS+EF GRTL N + +L +QNA +A
Sbjct: 53 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEA 112
Query: 117 LNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
+ LG +EE+ E E+D +CFLDSMATL L A+GYG+RY YG+F QKI
Sbjct: 113 IYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIR 172
Query: 177 KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPI 236
Q E A+DWL +PWE R + + PV F+G V GT KW+ +VV A+ YD P+
Sbjct: 173 DGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGT-KWIDTQVVLALPYDTPV 231
Query: 237 PGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGK 296
PGY ++RLW A+A DFNL FN G Y A + A+ I VLYP D+ EGK
Sbjct: 232 PGYMNNTVNTMRLWSARAP-NDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGK 290
Query: 297 LLRLKQQFFLCSASLQDMILRFKE------RKSGRQWSEFPSKVAVQLNDTHPTLAIPEL 350
LRLKQ++F+ +A+LQD+I RFK R +G + FP +VA+QLNDTHP LAIPEL
Sbjct: 291 ELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPEL 350
Query: 351 MRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 410
MR+ +D E L W +AW++T +T AYTNHTVLPEALE+W ++ KLLPRH+EII EI+++
Sbjct: 351 MRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQK 410
Query: 411 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLF 470
+ + + ++ M +++ K + MA+LC+V +H VNGVA++HSDI+K +F
Sbjct: 411 HLDRIVALFPKDVDRLRRMSLIEEEGSKR-INMAHLCIVGSHAVNGVAKIHSDIVKTKVF 469
Query: 471 ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530
D+ L P+K QNKTNGITPRRWL CNP L+++I + + D +V +L L L F +
Sbjct: 470 KDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGED-YVKDLSQLTKLHSFLGD 528
Query: 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY 590
E K +K + ++ V I+P+S+FD+QVKRIHEYKRQLLN L I Y
Sbjct: 529 DVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMY 588
Query: 591 KKLK 594
++K
Sbjct: 589 NRIK 592
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 344/544 (63%), Gaps = 10/544 (1%)
Query: 57 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADA 116
+FA A +VRD L+ +W T H+ PK+ YYLS+EF GRTL N + +L +QNA +A
Sbjct: 53 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEA 112
Query: 117 LNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
+ LG +EE+ E E+D +CFLDSMATL L A+GYG+RY YG+F QKI
Sbjct: 113 IYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIR 172
Query: 177 KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPI 236
Q E A+DWL +PWE R + + PV F+G V GT KW+ +VV A+ YD P+
Sbjct: 173 DGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGT-KWIDTQVVLALPYDTPV 231
Query: 237 PGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGK 296
PGY ++RLW A+A DFNL FN G Y A + A+ I VLYP D+ EGK
Sbjct: 232 PGYMNNTVNTMRLWSARAP-NDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGK 290
Query: 297 LLRLKQQFFLCSASLQDMILRFKE------RKSGRQWSEFPSKVAVQLNDTHPTLAIPEL 350
LRLKQ++F+ +A+LQD+I RFK R +G + FP +VA+QLNDTHP LAIPEL
Sbjct: 291 ELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPEL 350
Query: 351 MRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 410
MR+ +D E L W +AW++T +T AYTNHTVLPEALE+W ++ KLLPRH+EII EI+++
Sbjct: 351 MRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQK 410
Query: 411 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLF 470
+ + + ++ M +++ K + MA+LC+V +H VNGVA++HSDI+K +F
Sbjct: 411 HLDRIVALFPKDVDRLRRMSLIEEEGSKR-INMAHLCIVGSHAVNGVAKIHSDIVKTKVF 469
Query: 471 ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530
D+ L P+K QNKTNGITPRRWL CNP L+++I + + D +V +L L L F +
Sbjct: 470 KDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGED-YVKDLSQLTKLHSFLGD 528
Query: 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY 590
E K +K + ++ V I+P+S+FD+QVKRIHEYKRQLLN L I Y
Sbjct: 529 DVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMY 588
Query: 591 KKLK 594
++K
Sbjct: 589 NRIK 592
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 344/544 (63%), Gaps = 10/544 (1%)
Query: 57 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADA 116
+FA A +VRD L+ +W T H+ PK+ YYLS+EF GRTL N + +L +QNA +A
Sbjct: 55 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEA 114
Query: 117 LNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
+ LG +EE+ E E+D +CFLDSMATL L A+GYG+RY YG+F QKI
Sbjct: 115 IYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIR 174
Query: 177 KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPI 236
Q E A+DWL +PWE R + + PV F+G V GT KW+ +VV A+ YD P+
Sbjct: 175 DGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGT-KWIDTQVVLALPYDTPV 233
Query: 237 PGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGK 296
PGY ++RLW A+A DFNL FN G Y A + A+ I VLYP D+ EGK
Sbjct: 234 PGYMNNTVNTMRLWSARAP-NDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGK 292
Query: 297 LLRLKQQFFLCSASLQDMILRFK------ERKSGRQWSEFPSKVAVQLNDTHPTLAIPEL 350
LRLKQ++F+ +A+LQD+I RFK R +G + FP +VA+QLNDTHP LAIPEL
Sbjct: 293 ELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPEL 352
Query: 351 MRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 410
MR+ +D E L W +AW++T +T AYTNHTVLPEALE+W ++ KLLPRH+EII EI+++
Sbjct: 353 MRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQK 412
Query: 411 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLF 470
+ + + ++ M +++ K + MA+LC+V +H VNGVA++HSDI+K +F
Sbjct: 413 HLDRIVALFPKDVDRLRRMSLIEEEGSKR-INMAHLCIVGSHAVNGVAKIHSDIVKTKVF 471
Query: 471 ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530
D+ L P+K QNKTNGITPRRWL CNP L+++I + + D +V +L L L F +
Sbjct: 472 KDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGED-YVKDLSQLTKLHSFLGD 530
Query: 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY 590
E K +K + ++ V I+P+S+FD+QVKRIHEYKRQLLN L I Y
Sbjct: 531 DVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMY 590
Query: 591 KKLK 594
++K
Sbjct: 591 NRIK 594
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 344/544 (63%), Gaps = 10/544 (1%)
Query: 57 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADA 116
+FA A +VRD L+ +W T H+ PK+ YYLS+EF GRTL N + +L +QNA +A
Sbjct: 52 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEA 111
Query: 117 LNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
+ LG +EE+ E E+D +CFLDSMATL L A+GYG+RY YG+F QKI
Sbjct: 112 IYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIR 171
Query: 177 KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPI 236
Q E A+DWL +PWE R + + PV F+G V GT KW+ +VV A+ YD P+
Sbjct: 172 DGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGT-KWIDTQVVLALPYDTPV 230
Query: 237 PGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGK 296
PGY ++RLW A+A DFNL FN G Y A + A+ I VLYP D+ EGK
Sbjct: 231 PGYMNNTVNTMRLWSARAP-NDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGK 289
Query: 297 LLRLKQQFFLCSASLQDMILRFKE------RKSGRQWSEFPSKVAVQLNDTHPTLAIPEL 350
LRLKQ++F+ +A+LQD+I RFK R +G + FP +VA+QLNDTHP LAIPEL
Sbjct: 290 ELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPEL 349
Query: 351 MRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 410
MR+ +D E L W +AW++T +T AYTNHTVLPEALE+W ++ KLLPRH+EII EI+++
Sbjct: 350 MRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQK 409
Query: 411 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLF 470
+ + + ++ M +++ K + MA+LC+V +H VNGVA++HSDI+K +F
Sbjct: 410 HLDRIVALFPKDVDRLRRMSLIEEEGSKR-INMAHLCIVGSHAVNGVAKIHSDIVKTKVF 468
Query: 471 ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530
D+ L P+K QNKTNGITPRRWL CNP L+++I + + D +V +L L L F +
Sbjct: 469 KDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGED-YVKDLSQLTKLHSFLGD 527
Query: 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY 590
E K +K + ++ V I+P+S+FD+QVKRIHEYKRQLLN L I Y
Sbjct: 528 DVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMY 587
Query: 591 KKLK 594
++K
Sbjct: 588 NRIK 591
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 344/544 (63%), Gaps = 10/544 (1%)
Query: 57 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADA 116
+FA A +VRD L+ +W T H+ PK+ YYLS+EF GRTL N + +L +QNA +A
Sbjct: 52 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEA 111
Query: 117 LNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
+ LG +EE+ E E+D +CFLDSMATL L A+GYG+RY YG+F QKI
Sbjct: 112 IYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIR 171
Query: 177 KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPI 236
Q E A+DWL +PWE R + + PV F+G V GT KW+ +VV A+ YD P+
Sbjct: 172 DGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGT-KWIDTQVVLALPYDTPV 230
Query: 237 PGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGK 296
PGY ++RLW A+A DFNL FN G Y A + A+ I VLYP D+ EGK
Sbjct: 231 PGYMNNTVNTMRLWSARAP-NDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGK 289
Query: 297 LLRLKQQFFLCSASLQDMILRFKE------RKSGRQWSEFPSKVAVQLNDTHPTLAIPEL 350
LRLKQ++F+ +A+LQD+I RFK R +G + FP +VA+QLNDTHP LAIPEL
Sbjct: 290 ELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPEL 349
Query: 351 MRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 410
MR+ +D E L W +AW++T +T AYTNHTVLPEALE+W ++ KLLPRH+EII EI+++
Sbjct: 350 MRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQK 409
Query: 411 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLF 470
+ + + ++ M +++ K + MA+LC+V +H VNGVA++HSDI+K +F
Sbjct: 410 HLDRIVALFPKDVDRLRRMSLIEEEGSKR-INMAHLCIVGSHAVNGVAKIHSDIVKTKVF 468
Query: 471 ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530
D+ L P+K QNKTNGITPRRWL CNP L+++I + + D +V +L L L F +
Sbjct: 469 KDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGED-YVKDLSQLTKLHSFLGD 527
Query: 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY 590
E K +K + ++ V I+P+S+FD+QVKRIHEYKRQLLN L I Y
Sbjct: 528 DVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMY 587
Query: 591 KKLK 594
++K
Sbjct: 588 NRIK 591
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 344/544 (63%), Gaps = 10/544 (1%)
Query: 57 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADA 116
+FA A +VRD L+ +W T H+ PK+ YYLS+EF GRTL N + +L +QNA +A
Sbjct: 54 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEA 113
Query: 117 LNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
+ LG +EE+ E E+D +CFLDSMATL L A+GYG+RY YG+F QKI
Sbjct: 114 IYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIR 173
Query: 177 KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPI 236
Q E A+DWL +PWE R + + PV F+G V GT KW+ +VV A+ YD P+
Sbjct: 174 DGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGT-KWIDTQVVLALPYDTPV 232
Query: 237 PGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGK 296
PGY ++RLW A+A DFNL FN G Y A + A+ I VLYP D+ EGK
Sbjct: 233 PGYMNNTVNTMRLWSARAP-NDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGK 291
Query: 297 LLRLKQQFFLCSASLQDMILRFKE------RKSGRQWSEFPSKVAVQLNDTHPTLAIPEL 350
LRLKQ++F+ +A+LQD+I RFK R +G + FP +VA+QLNDTHP LAIPEL
Sbjct: 292 ELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPEL 351
Query: 351 MRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 410
MR+ +D E L W +AW++T +T AYTNHTVLPEALE+W ++ KLLPRH+EII EI+++
Sbjct: 352 MRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQK 411
Query: 411 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLF 470
+ + + ++ M +++ K + MA+LC+V +H VNGVA++HSDI+K +F
Sbjct: 412 HLDRIVALFPKDVDRLRRMSLIEEEGSKR-INMAHLCIVGSHAVNGVAKIHSDIVKTKVF 470
Query: 471 ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530
D+ L P+K QNKTNGITPRRWL CNP L+++I + + D +V +L L L F +
Sbjct: 471 KDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGED-YVKDLSQLTKLHSFLGD 529
Query: 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY 590
E K +K + ++ V I+P+S+FD+QVKRIHEYKRQLLN L I Y
Sbjct: 530 DVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMY 589
Query: 591 KKLK 594
++K
Sbjct: 590 NRIK 593
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 475 bits (1222), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 344/544 (63%), Gaps = 10/544 (1%)
Query: 57 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADA 116
+FA A +VRD L+ +W T H+ PK+ YYLS+EF GRTL N + +L +QNA +A
Sbjct: 30 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEA 89
Query: 117 LNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
+ LG +EE+ E E+D +CFLDSMATL L A+GYG+RY YG+F QKI
Sbjct: 90 IYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIR 149
Query: 177 KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPI 236
Q E A+DWL +PWE R + + PV F+G V GT KW+ +VV A+ YD P+
Sbjct: 150 DGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGT-KWIDTQVVLALPYDTPV 208
Query: 237 PGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGK 296
PGY ++RLW A+A DFNL FN G Y A + A+ I VLYP D+ EGK
Sbjct: 209 PGYMNNTVNTMRLWSARAP-NDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGK 267
Query: 297 LLRLKQQFFLCSASLQDMILRFK------ERKSGRQWSEFPSKVAVQLNDTHPTLAIPEL 350
LRLKQ++F+ +A+LQD+I RFK R +G + FP +VA+QLNDTHP LAIPEL
Sbjct: 268 ELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPEL 327
Query: 351 MRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 410
MR+ +D E L W +AW++T +T AYTNHTVLPEALE+W ++ KLLPRH+EII EI+++
Sbjct: 328 MRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQK 387
Query: 411 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLF 470
+ + + ++ M +++ K + MA+LC+V +H VNGVA++HSDI+K +F
Sbjct: 388 HLDRIVALFPKDVDRLRRMSLIEEEGSKR-INMAHLCIVGSHAVNGVAKIHSDIVKTKVF 446
Query: 471 ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530
D+ L P+K QNKTNGITPRRWL CNP L+++I + + D +V +L L L F +
Sbjct: 447 KDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGED-YVKDLSQLTKLHSFLGD 505
Query: 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY 590
E K +K + ++ V I+P+S+FD+QVKRIHEYKRQLLN L I Y
Sbjct: 506 DVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMY 565
Query: 591 KKLK 594
++K
Sbjct: 566 NRIK 569
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 474 bits (1220), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/544 (46%), Positives = 343/544 (63%), Gaps = 10/544 (1%)
Query: 57 FFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADA 116
+FA A +VRD L+ +W T H+ PK+ YYLS+EF GRTL N + +L +QNA +A
Sbjct: 52 YFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEA 111
Query: 117 LNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKIT 176
+ LG +EE+ E E+D +CFLDSMATL L A+GYG+RY YG+F QKI
Sbjct: 112 IYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIR 171
Query: 177 KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPI 236
Q E A+DWL +PWE R + + PV F+G V GT KW+ +VV A+ YD P+
Sbjct: 172 DGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGT-KWIDTQVVLALPYDTPV 230
Query: 237 PGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGK 296
PGY ++RLW A+A DFNL FN G Y A + A+ I VLYP D+ EGK
Sbjct: 231 PGYMNNTVNTMRLWSARAP-NDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGK 289
Query: 297 LLRLKQQFFLCSASLQDMILRFKERKSGRQ------WSEFPSKVAVQLNDTHPTLAIPEL 350
LRLKQ++F+ +A+LQD+I RFK K G + FP +VA+QLNDTHP LAIPEL
Sbjct: 290 ELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAATVFDAFPDQVAIQLNDTHPALAIPEL 349
Query: 351 MRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKR 410
MR+ +D E L W +AW++T +T AYTNHTVLPEALE+W ++ KLLPRH+EII EI+++
Sbjct: 350 MRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQK 409
Query: 411 FIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLF 470
+ + + ++ M +++ K + MA+LC+V +H VNGVA++HSDI+K +F
Sbjct: 410 HLDRIVALFPKDVDRLRRMSLIEEEGSKR-INMAHLCIVGSHAVNGVAKIHSDIVKTKVF 468
Query: 471 ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530
D+ L P+K QNKTNGITPRRWL CNP L+++I + + D +V +L L L F +
Sbjct: 469 KDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGED-YVKDLSQLTKLHSFLGD 527
Query: 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRY 590
E K +K + ++ V I+P+S+FD+QVKRIHEYKRQLLN L I Y
Sbjct: 528 DVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMY 587
Query: 591 KKLK 594
++K
Sbjct: 588 NRIK 591
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/550 (40%), Positives = 321/550 (58%), Gaps = 20/550 (3%)
Query: 47 SPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNK--VDPKQTYYLSMEFLQGRTLTNAI 104
S + P Q + A +E++ + L Q F K + + Y+SMEFL GR N +
Sbjct: 25 SAAEMTPRQWWLAVSEALAEMLRAQ------PFAKPVANQRHVNYISMEFLIGRLTGNNL 78
Query: 105 GSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGL 164
+L D+L L ++ E+E D +CFLDSMAT+ A GYGL
Sbjct: 79 LNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGL 138
Query: 165 RYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGG 224
Y+YGLF+Q Q E +DW PW RH+ V+ V +G +W
Sbjct: 139 NYQYGLFRQSFVDGKQVEAPDDWHRSNYPW--FRHNEALDVQVGIGGKVTKDG--RWEPE 194
Query: 225 EVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICA 284
+ A+D+P+ GY+ LRLW A A F+L +FNDG + A Q A+++
Sbjct: 195 FTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFDLTKFNDGDFLRAEQQGINAEKLTK 253
Query: 285 VLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPT 344
VLYP D+ EGK LRL QQ+F C+ S+ D++ R +GR+ E +QLNDTHPT
Sbjct: 254 VLYPNDNAFEGKKLRLMQQYFQCACSVADILRR--HHLAGRKLHELADYEVIQLNDTHPT 311
Query: 345 LAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEII 404
+AIPEL+R+L+DE + WD+AW IT++T AYTNHT++PEALE+W ++ LLPRHM+II
Sbjct: 312 IAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQII 371
Query: 405 EEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDI 464
EI+ RF +V T E + ++ + V MANLCVV VNGVA LHSD+
Sbjct: 372 NEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQ----VHMANLCVVGGFAVNGVAALHSDL 427
Query: 465 LKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGL 524
+ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K L+ +W +LD L+ L
Sbjct: 428 VVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQK-EWANDLDQLINL 486
Query: 525 RQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNIL 584
+FAD+ + + ++ K A+K LA+++ TG+ I+P ++FDIQ+KR+HEYKRQ LN+L
Sbjct: 487 EKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLL 546
Query: 585 GAIYRYKKLK 594
+ YK+++
Sbjct: 547 HILALYKEIR 556
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/550 (40%), Positives = 320/550 (58%), Gaps = 20/550 (3%)
Query: 47 SPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNK--VDPKQTYYLSMEFLQGRTLTNAI 104
S + P Q + A +E++ + L Q F K + + Y+SMEFL GR N +
Sbjct: 25 SAAEMTPRQWWLAVSEALAEMLRAQ------PFAKPVANQRHVNYISMEFLIGRLTGNNL 78
Query: 105 GSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGL 164
+L D+L L ++ E+E D +CFLDSMAT+ A GYGL
Sbjct: 79 LNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGL 138
Query: 165 RYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGG 224
Y+YGLF+Q Q E +DW PW RH+ V+ V +G +W
Sbjct: 139 NYQYGLFRQSFVDGKQVEAPDDWHRSNYPW--FRHNEALDVQVGIGGKVTKDG--RWEPE 194
Query: 225 EVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICA 284
+ A+D+P+ GY+ LRLW A A F+L +FNDG + A Q A+++
Sbjct: 195 FTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFDLTKFNDGDFLRAEQQGINAEKLTK 253
Query: 285 VLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPT 344
VLYP D+ GK LRL QQ+F C+ S+ D++ R +GR+ E +QLNDTHPT
Sbjct: 254 VLYPNDNHTAGKKLRLMQQYFQCACSVADILRR--HHLAGRKLHELADYEVIQLNDTHPT 311
Query: 345 LAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEII 404
+AIPEL+R+L+DE + WD+AW IT++T AYTNHT++PEALE+W ++ LLPRHM+II
Sbjct: 312 IAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQII 371
Query: 405 EEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDI 464
EI+ RF +V T E + ++ + V MANLCVV VNGVA LHSD+
Sbjct: 372 NEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQ----VHMANLCVVGGFAVNGVAALHSDL 427
Query: 465 LKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGL 524
+ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K L+ +W +LD L+ L
Sbjct: 428 VVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQK-EWANDLDQLINL 486
Query: 525 RQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNIL 584
+FAD+ + + ++ K A+K LA+++ TG+ I+P ++FDIQ+KR+HEYKRQ LN+L
Sbjct: 487 EKFADDAKFRDQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLL 546
Query: 585 GAIYRYKKLK 594
+ YK+++
Sbjct: 547 HILALYKEIR 556
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/550 (40%), Positives = 318/550 (57%), Gaps = 20/550 (3%)
Query: 47 SPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNK--VDPKQTYYLSMEFLQGRTLTNAI 104
S + P Q + A +E++ + L Q F K + + Y+SMEFL GR N +
Sbjct: 26 SAAEMTPRQWWLAVSEALAEMLRAQ------PFAKPVANQRHVNYISMEFLIGRLTGNNL 79
Query: 105 GSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGL 164
+L D+L L ++ E+E D +CFLDSMAT+ A GYGL
Sbjct: 80 LNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGAGGLGRLAACFLDSMATVGQSATGYGL 139
Query: 165 RYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGG 224
Y+YGLF+Q Q E +DW PW RH+ V+ V +G +W
Sbjct: 140 NYQYGLFRQSFVDGKQVEAPDDWHRSNYPW--FRHNEALDVQVGIGGAVTKDG--RWEPE 195
Query: 225 EVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICA 284
+ A+D+P+ GY+ LRLW A A F+L +FNDG + A Q A+++
Sbjct: 196 FTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFDLTKFNDGDFLRAEQQGINAEKLTK 254
Query: 285 VLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPT 344
VLYP D+ GK LRL QQ+F C+ S+ D++ R +GR+ E +QLNDTHPT
Sbjct: 255 VLYPNDNHTAGKKLRLMQQYFQCACSVADILRR--HHLAGRELHELADYEVIQLNDTHPT 312
Query: 345 LAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEII 404
+AIPEL+R+L+DE + WD+AW IT++T AYTNHT++PEALE+W ++ LLPRHM+II
Sbjct: 313 IAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQII 372
Query: 405 EEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDI 464
EI+ RF +V T E + ++ + V MANLCVV VNGVA LHSD+
Sbjct: 373 NEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQ----VHMANLCVVGGFAVNGVAALHSDL 428
Query: 465 LKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGL 524
+ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K L+ +W +LD L+ L
Sbjct: 429 VVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQK-EWANDLDQLINL 487
Query: 525 RQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNIL 584
+ AD+ + + + K A+K LA+++ TG+ I+P ++FDIQ+KR+HEYKRQ LN+L
Sbjct: 488 VKLADDAKFRDLYRVIKQANKVRLAEFVKVRTGIDINPQAIFDIQIKRLHEYKRQHLNLL 547
Query: 585 GAIYRYKKLK 594
+ YK+++
Sbjct: 548 RILALYKEIR 557
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/550 (40%), Positives = 318/550 (57%), Gaps = 20/550 (3%)
Query: 47 SPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNK--VDPKQTYYLSMEFLQGRTLTNAI 104
S + P Q + A +E++ + L Q F K + + Y+SMEFL GR N +
Sbjct: 25 SAAEMTPRQWWLAVSEALAEMLRAQ------PFAKPVANQRHVNYISMEFLIGRLTGNNL 78
Query: 105 GSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGL 164
+L D+L L ++ E+E D +CFLDSMAT+ A GYGL
Sbjct: 79 LNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGL 138
Query: 165 RYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGG 224
Y+YGLF+Q Q E +DW PW RH+ V+ V +G +W
Sbjct: 139 NYQYGLFRQSFVDGKQVEAPDDWHRSNYPW--FRHNEALDVQVGIGGAVTKDG--RWEPE 194
Query: 225 EVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICA 284
+ A+D+P+ GY+ LRLW A A F+L +FNDG + A Q A+++
Sbjct: 195 FTITGQAWDLPVVGYRNGVAQPLRLWQA-THAHPFDLTKFNDGDFLRAEQQGINAEKLTK 253
Query: 285 VLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPT 344
VLYP D+ GK LRL QQ+F C+ S+ D++ R +GR+ E +QLNDTHPT
Sbjct: 254 VLYPNDNHTAGKKLRLMQQYFQCACSVADILRR--HHLAGRELHELADYEVIQLNDTHPT 311
Query: 345 LAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEII 404
+AIPEL+R+L+DE + WD+AW IT++T AYTNHT++PEALE+W ++ LLPRHM+II
Sbjct: 312 IAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQII 371
Query: 405 EEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDI 464
EI+ RF +V T E + ++ + V MANLCVV VNGVA LHSD+
Sbjct: 372 NEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQ----VHMANLCVVGGFAVNGVAALHSDL 427
Query: 465 LKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGL 524
+ DLF +Y LWPNK N TNGITPRRW++ CNP L+ ++ K L+ +W +LD L+ L
Sbjct: 428 VVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQK-EWANDLDQLINL 486
Query: 525 RQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNIL 584
+ AD+ + + + K A+K LA+++ TG+ I+P ++FDIQ+KR+HEYKRQ LN+L
Sbjct: 487 VKLADDAKFRDLYRVIKQANKVRLAEFVKVRTGIDINPQAIFDIQIKRLHEYKRQHLNLL 546
Query: 585 GAIYRYKKLK 594
+ YK+++
Sbjct: 547 RILALYKEIR 556
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/564 (41%), Positives = 325/564 (57%), Gaps = 29/564 (5%)
Query: 33 ASNISYHVQYSPHFSPTKFEPEQAFF-ATAESVRDRLIQQWNETYHHFNKVDPKQTYYLS 91
A+ + HV+ + +P ++ F+ + +V++R+ W T + +Q +Y S
Sbjct: 10 AALVGSHVRAAAG-TPADLATDRKFWTGLSRAVQERIADDWERTREAYGAA--RQQHYFS 66
Query: 92 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFLDS 151
EFL GR L N + +L + + A A LGH L +I E E D +CFLDS
Sbjct: 67 AEFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDS 126
Query: 152 MATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSV 211
T + P GYGL YR+GLF+Q + Q E + W E+ P+ + R V F
Sbjct: 127 AVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCF---- 182
Query: 212 MVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYES 271
+ TR A+ YD+PI GY T N +LRLW A+ E+F+ FN ++
Sbjct: 183 --DDMKTR---------AIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTD 230
Query: 272 AAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMIL-RFKERKSGRQWSEF 330
A R IC VLYP D+T EGK LR++QQ+F SASLQ MI K ++EF
Sbjct: 231 AIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLAHHKDLSNFAEF 290
Query: 331 PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQ 390
S VQLNDTHP LAIPELMRLLMDE +GW+E+W I ++T AYTNHTVL EALE+W +
Sbjct: 291 HS---VQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDE 347
Query: 391 AVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVS 450
+ +L R EII EID+RF + R+ E I M + + V MA + +
Sbjct: 348 QIFQQLFWRVWEIIAEIDRRF-RLERAADGLDEETINRMAPIQHG----TVHMAWIACYA 402
Query: 451 AHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLK 510
A+++NGVA LH++I+KA+ AD+ +LWP K NKTNG+TPRRWLR NP LS ++T+
Sbjct: 403 AYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSG 462
Query: 511 TDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQV 570
+D WVT+LD L LR +AD+ + E + K A+K+ A++I G+ IDP S+FD+Q+
Sbjct: 463 SDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQI 522
Query: 571 KRIHEYKRQLLNILGAIYRYKKLK 594
KR+HEYKRQL+N L + Y ++K
Sbjct: 523 KRLHEYKRQLMNALYVLDLYFRIK 546
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 368 ITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIP 427
+ R Y NH + E +E A + K++ H I R+I ++S ++P
Sbjct: 212 LDARDRRYKNHAAIDEVMESVKAAGVKKVILYH------ISTRYIRQLKSVIKKYREEMP 265
Query: 428 SMCILDNNPKK 438
+ IL +P+K
Sbjct: 266 DVEILYMDPRK 276
>pdb|1S72|E Chain E, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|E Chain E, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|E Chain E, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|E Chain E, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|E Chain E, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|E Chain E, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|E Chain E, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|E Chain E, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|E Chain E, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|E Chain E, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|E Chain E, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|E Chain E, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|E Chain E, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|E Chain E, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|E Chain E, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|E Chain E, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|E Chain E, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|E Chain E, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|E Chain E, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|E Chain E, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|E Chain E, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|E Chain E, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|E Chain E, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|E Chain E, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|E Chain E, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|E Chain E, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|E Chain E, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|E Chain E, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|E Chain E, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|E Chain E, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|E Chain E, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|E Chain E, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|E Chain E, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|E Chain E, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 178
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 159 AWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGT 218
W YG+ Y F ++ +G E V E++L + +P H G V +G
Sbjct: 80 GWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIH---------GDTDVEIDGE 130
Query: 219 RKWVGGEVVQAVA 231
V G ++AV
Sbjct: 131 ELTVSGPDIEAVG 143
>pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1JJ2|E Chain E, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|E Chain E, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|G Chain G, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|G Chain G, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|G Chain G, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|G Chain G, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|G Chain G, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|G Chain G, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|G Chain G, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|G Chain G, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|G Chain G, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|G Chain G, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|G Chain G, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|G Chain G, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|G Chain G, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|E Chain E, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|E Chain E, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|E Chain E, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CXC|E Chain E, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
Length = 177
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 159 AWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGT 218
W YG+ Y F ++ +G E V E++L + +P H G V +G
Sbjct: 79 GWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIH---------GDTDVEIDGE 129
Query: 219 RKWVGGEVVQAVA 231
V G ++AV
Sbjct: 130 ELTVSGPDIEAVG 142
>pdb|3G4S|E Chain E, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|E Chain E, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|E Chain E, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3OW2|E Chain E, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 172
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 159 AWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGT 218
W YG+ Y F ++ +G E V E++L + +P H G V +G
Sbjct: 79 GWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIH---------GDTDVEIDGE 129
Query: 219 RKWVGGEVVQAVA 231
V G ++AV
Sbjct: 130 ELTVSGPDIEAVG 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,484,984
Number of Sequences: 62578
Number of extensions: 707493
Number of successful extensions: 1798
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 40
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)