Query 007597
Match_columns 596
No_of_seqs 186 out of 1137
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099 Glycogen phosphorylase 100.0 5E-195 1E-199 1540.6 36.3 581 10-595 6-594 (843)
2 TIGR02093 P_ylase glycogen/sta 100.0 9E-182 2E-186 1521.9 50.2 554 36-595 1-558 (794)
3 cd04300 GT1_Glycogen_Phosphory 100.0 2E-180 4E-185 1516.6 52.1 557 33-595 1-561 (797)
4 PRK14985 maltodextrin phosphor 100.0 5E-180 1E-184 1506.0 50.8 556 27-595 5-560 (798)
5 PRK14986 glycogen phosphorylas 100.0 3E-179 7E-184 1504.1 53.6 569 19-595 4-574 (815)
6 PF00343 Phosphorylase: Carboh 100.0 1E-159 3E-164 1330.5 34.5 474 116-596 1-476 (713)
7 COG0058 GlgP Glucan phosphoryl 100.0 3E-144 7E-149 1208.0 30.3 514 28-595 5-518 (750)
8 cd04299 GT1_Glycogen_Phosphory 100.0 5.4E-97 1E-101 843.1 31.0 424 55-594 58-507 (778)
9 TIGR02094 more_P_ylases alpha- 100.0 5.1E-95 1.1E-99 812.8 27.5 397 87-595 1-419 (601)
10 cd03791 GT1_Glycogen_synthase_ 99.2 9.2E-11 2E-15 128.1 14.7 307 134-591 11-322 (476)
11 TIGR02095 glgA glycogen/starch 99.2 3.9E-10 8.5E-15 123.9 15.7 301 135-591 13-317 (473)
12 PRK00654 glgA glycogen synthas 98.9 2.3E-08 5.1E-13 110.1 16.3 205 298-591 99-308 (466)
13 PRK14098 glycogen synthase; Pr 98.8 9.2E-08 2E-12 106.5 16.3 207 297-591 121-333 (489)
14 PLN02939 transferase, transfer 98.7 6E-07 1.3E-11 105.7 21.1 348 50-590 448-804 (977)
15 PRK14099 glycogen synthase; Pr 98.2 3.5E-06 7.6E-11 93.9 9.5 206 298-591 112-321 (485)
16 PF08323 Glyco_transf_5: Starc 98.1 7.4E-06 1.6E-10 83.5 7.1 213 136-463 13-228 (245)
17 PLN02316 synthase/transferase 97.5 0.0011 2.4E-08 79.8 14.5 173 304-591 693-866 (1036)
18 COG0297 GlgA Glycogen synthase 96.8 0.017 3.8E-07 64.8 13.6 210 297-592 108-321 (487)
19 PF11897 DUF3417: Protein of u 96.2 0.0025 5.4E-08 58.6 2.2 44 54-100 73-118 (118)
20 cd03793 GT1_Glycogen_synthase_ 84.7 3 6.4E-05 48.2 8.0 107 441-593 217-327 (590)
21 PF05693 Glycogen_syn: Glycoge 45.0 59 0.0013 38.1 7.2 186 303-593 121-322 (633)
22 PF14474 RTC4: RTC4-like domai 34.8 29 0.00064 32.2 2.4 32 344-375 85-117 (124)
23 PF00782 DSPc: Dual specificit 33.4 1E+02 0.0022 27.5 5.7 37 332-372 74-113 (133)
24 cd00127 DSPc Dual specificity 31.7 73 0.0016 28.6 4.4 38 331-372 81-121 (139)
25 smart00195 DSPc Dual specifici 30.0 78 0.0017 28.7 4.3 39 331-373 78-119 (138)
26 PF14407 Frankia_peptide: Ribo 29.3 15 0.00033 30.2 -0.4 41 92-132 2-42 (61)
27 TIGR02149 glgA_Coryne glycogen 27.6 1.1E+02 0.0025 32.0 5.7 44 447-494 141-184 (388)
28 COG0380 OtsA Trehalose-6-phosp 26.7 81 0.0017 36.0 4.5 55 332-407 147-201 (486)
29 cd03788 GT1_TPS Trehalose-6-Ph 23.7 1.4E+02 0.003 33.5 5.6 56 331-407 130-185 (460)
30 PF03474 DMA: DMRTA motif; In 22.7 75 0.0016 24.0 2.2 29 388-423 3-31 (39)
31 TIGR02472 sucr_P_syn_N sucrose 21.9 1.3E+02 0.0029 32.9 5.1 35 332-381 114-148 (439)
32 PF11212 DUF2999: Protein of u 21.3 76 0.0016 27.1 2.2 20 112-131 59-78 (82)
33 COG5405 HslV ATP-dependent pro 20.1 91 0.002 30.7 2.8 37 350-386 136-176 (178)
No 1
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-195 Score=1540.61 Aligned_cols=581 Identities=52% Similarity=0.903 Sum_probs=568.7
Q ss_pred chhhhhcccccccCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEE
Q 007597 10 NEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89 (596)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ik~~i~~~l~~~~gk~~~~as~~~~Y~Ala~~vrd~l~~~W~~T~~~~~~~~~k~vyY 89 (596)
.+.++|+||||++.+...++.++++.|.+|+++++.+++..+++.+.|.|+|.+|||.|..+|++|++.|++.++|||||
T Consensus 6 ~~~~~r~qis~r~~~~~~~~~e~~~~f~~H~~ftl~k~~~~~~~~~~yfA~a~tvRD~Lv~~W~rTqqhy~~~dpKrvYY 85 (843)
T KOG2099|consen 6 IDSEKRKQISVRGIAGVEDVAEVKKSFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRVYY 85 (843)
T ss_pred cccchhhhcchhcccCCccHHHHHHHHHhheeeeeecCcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeE
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhccccchHHHhhcCCcHHHHHHHHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCc
Q 007597 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYG 169 (596)
Q Consensus 90 ~SmEfl~gr~l~nnl~nLg~~~~~~~~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~G 169 (596)
|||||+|||+|+|.++||||+..|.+||.+||+|+++|+|+|+|||||||||||||+||||||||||+|++||||||+||
T Consensus 86 LSlEf~mGRaL~Ntm~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyG 165 (843)
T KOG2099|consen 86 LSLEFYMGRALQNTMINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYG 165 (843)
T ss_pred eehHHhhhhHHHHHHHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCeeeeecccccccCCCcccccCCeEEEEEECCeEEECCCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEE
Q 007597 170 LFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRL 249 (596)
Q Consensus 170 yF~Q~I~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrL 249 (596)
+|+|+|.+|||+|.||+||+.|||||+.|+++++||+|+|+|+...+| .+|++++.|.|+|||+|||||+|++||+|||
T Consensus 166 iF~QkI~~g~Q~E~~ddWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g-~kWid~q~V~A~~YD~PvPGyk~n~vntlRL 244 (843)
T KOG2099|consen 166 IFKQKITDGWQVEEPDDWLRYGNPWEKARPEVMLPVHFYGKVEHTPDG-SKWIDTQVVLAMPYDTPVPGYKNNTVNTLRL 244 (843)
T ss_pred hHHHHhcCCccccchHHHHHcCCchhhcCcceEeEEEEEEEEEeCCCc-ceeecceeEEEeccCCCCCCcccCcceeeee
Confidence 999999999999999999999999999999999999999999987777 5799999999999999999999999999999
Q ss_pred EecccCCccccccccCcchhhhHHhhhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccC-----
Q 007597 250 WDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324 (596)
Q Consensus 250 W~a~v~~~~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~----- 324 (596)
|+|+ ++++|||..||.|+|.+|+.+++.+++||.+|||+|+..+||+||||||||+|+||+|||||||+...+|
T Consensus 245 Wsak-a~~df~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~ 323 (843)
T KOG2099|consen 245 WSAK-APNDFDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPV 323 (843)
T ss_pred eccC-CCCCCCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCccccc
Confidence 9999 7779999999999999999999999999999999999999999999999999999999999999865543
Q ss_pred -cccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHH
Q 007597 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEI 403 (596)
Q Consensus 325 -~~l~~l~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~i 403 (596)
..+++||++++||||||||+||||||||+|||.+||+|++||+||.+||+|||||++|||+|+||++||+++||||++|
T Consensus 324 ~~~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~AWdit~kT~AYTNHTVlpEALErWp~~L~e~LLPRHleI 403 (843)
T KOG2099|consen 324 RTNFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKAWDITQKTCAYTNHTVLPEALERWPVSLMEKLLPRHLEI 403 (843)
T ss_pred ccchhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHHHHHhhhheeeccccccHHHHHHhhHHHHHHhhhHHHHH
Confidence 3499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCC--eeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCC
Q 007597 404 IEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKP--VVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKL 481 (596)
Q Consensus 404 i~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~--~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~ 481 (596)
||+||.+|++.+.+.+|.|.|++++|||+++ +++ ++|||+||+++||.|||||++||+|+|+.+|+||+++||+||
T Consensus 404 Iy~In~~~l~~i~~~fp~D~drlrrmsiiee--~~~~k~i~MA~L~ivgsHaVNGVa~iHSeilK~~~F~Df~e~~P~KF 481 (843)
T KOG2099|consen 404 IYEINQRFLQTVAAKFPGDVDRLRRMSIIEE--NSPEKRINMAHLCIVGSHAVNGVAEIHSEILKQSVFKDFYELEPEKF 481 (843)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHhhhhhhhc--CCccceeeeeeeeeecccccccHHHHHHHHHHHHHHHHHHHhChHHh
Confidence 9999999999999999999999999999998 534 999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 007597 482 QNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTID 561 (596)
Q Consensus 482 ~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ld 561 (596)
+|+||||||||||.+|||.|+++|++.||+ +|++|+++|.+|.++++|++|+++|+++|++||.+|++||++.+|+.+|
T Consensus 482 qNkTNGITPRRWL~~cnP~LadlI~e~ige-~~i~dl~~l~~L~~~a~d~~f~~~~a~vK~~NKlk~a~~le~e~~v~in 560 (843)
T KOG2099|consen 482 QNKTNGITPRRWLLLCNPGLADLITEKIGE-EWITDLDQLTKLRKFADDEEFQREWAKVKQENKLKLAAYLEKEYGVKIN 560 (843)
T ss_pred ccccCCcCHHHHHHhcCchHHHHHHHHhhh-HhhhhHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHHHHHHhCcccC
Confidence 999999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred CCCccccceeccccccccccchhhHHHHHHHhhc
Q 007597 562 PNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKV 595 (596)
Q Consensus 562 p~~lfd~~arR~heYKRq~Lnil~~i~ry~~ik~ 595 (596)
|++|||+|+||+||||||+||+||+|+||++||+
T Consensus 561 p~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~ 594 (843)
T KOG2099|consen 561 PSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKE 594 (843)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999985
No 2
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=8.9e-182 Score=1521.94 Aligned_cols=554 Identities=54% Similarity=0.915 Sum_probs=541.2
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEechhccccchHHHhhcCCcHHHHHH
Q 007597 36 ISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYAD 115 (596)
Q Consensus 36 i~~~l~~~~gk~~~~as~~~~Y~Ala~~vrd~l~~~W~~T~~~~~~~~~k~vyY~SmEfl~gr~l~nnl~nLg~~~~~~~ 115 (596)
|.+||++++|+++++||+.++|+|||.+|||+++++|.+|++.+.+.+.|+||||||||||||+|.|||+|||+++++++
T Consensus 1 ~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~nlgl~~~~~~ 80 (794)
T TIGR02093 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVRDRLVDRWLETQEKYRDNNQKQVYYLSAEFLMGRLLGNNLLNLGLYDEVKE 80 (794)
T ss_pred CHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEEehhhhcchHHHHHHHhCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCcc
Q 007597 116 ALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWE 195 (596)
Q Consensus 116 ~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~QvE~pd~Wl~~~~pwe 195 (596)
||++||+++++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.||||+|.||+|+..++|||
T Consensus 81 ~l~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~~~pwe 160 (794)
T TIGR02093 81 ALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWE 160 (794)
T ss_pred HHHHhCCCHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEcCCCcCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEEECCeEEECCC-Ccee--eeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcchhhhH
Q 007597 196 VVRHDVVFPVRFFGSVMVNPN-GTRK--WVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESA 272 (596)
Q Consensus 196 ~~r~~~~~~V~f~g~v~~~~~-g~~~--~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~~y~~a 272 (596)
++|++.+++|+|+|+|+...+ |+.+ |++++.|+|+|||+|||||+++++|+||||+++ +.+.|||..||.|+|.++
T Consensus 161 ~~r~~~~~~V~f~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LRLW~a~-~~~~f~l~~fn~gdy~~a 239 (794)
T TIGR02093 161 IRRPDRSYEVRFGGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFNAGDYYEA 239 (794)
T ss_pred eecCCcEEEEEeCCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEEEEEec-CccccCHhhccCccHhhh
Confidence 999999999999999986544 6444 999999999999999999999999999999999 677899999999999999
Q ss_pred HhhhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHHHHH
Q 007597 273 AQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMR 352 (596)
Q Consensus 273 ~~~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~ElmR 352 (596)
+++++.+|+||++|||+|++++||++||||||||||||+|||||+|++.+ .+|+.|+++++||||||||||++|||||
T Consensus 240 ~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~--~~l~~l~~~~~ihlNDtHpalai~ElmR 317 (794)
T TIGR02093 240 VEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETH--PDLSDFPKKVAIQLNDTHPALAIPELMR 317 (794)
T ss_pred hhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHhC--CChhhCCcceEEEecCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 5899999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccc
Q 007597 353 LLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCIL 432 (596)
Q Consensus 353 ~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii 432 (596)
+|||++|++||+||++|+++|+||||||||||||+||++||+++||||++||++||++|+..++..+|.|++++.+||||
T Consensus 318 ~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~fl~~~~~~~p~d~~~~~~~sii 397 (794)
T TIGR02093 318 LLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSII 397 (794)
T ss_pred HHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHHHHHHHHhCCCcHHHHhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-eeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCC
Q 007597 433 DNNPKKP-VVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKT 511 (596)
Q Consensus 433 ~~~~~~~-~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~ 511 (596)
++ ++. +|+||+||+++||+|||||+||++|+|+++|++|+.+||+||+|||||||+|||+.+|||+|++||+++||+
T Consensus 398 ~~--~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~ 475 (794)
T TIGR02093 398 EE--GQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGD 475 (794)
T ss_pred ec--CCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCc
Confidence 97 444 899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHH
Q 007597 512 DQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 591 (596)
Q Consensus 512 ~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~ 591 (596)
+|.+|++.|++|+++++|++|+++|+++|++||++|++||++++|+.+||++|||+|||||||||||+||+|++++||.
T Consensus 476 -~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~ 554 (794)
T TIGR02093 476 -DWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYN 554 (794)
T ss_pred -hhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 007597 592 KLKV 595 (596)
Q Consensus 592 ~ik~ 595 (596)
+||+
T Consensus 555 ~i~~ 558 (794)
T TIGR02093 555 RIKE 558 (794)
T ss_pred HHHh
Confidence 9986
No 3
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=1.7e-180 Score=1516.58 Aligned_cols=557 Identities=54% Similarity=0.903 Sum_probs=543.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEechhccccchHHHhhcCCcHHH
Q 007597 33 ASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNA 112 (596)
Q Consensus 33 k~~i~~~l~~~~gk~~~~as~~~~Y~Ala~~vrd~l~~~W~~T~~~~~~~~~k~vyY~SmEfl~gr~l~nnl~nLg~~~~ 112 (596)
++.|.+||.+++|+++++||+.++|+|||.+|||+++++|.+|++.+.+.+.|+||||||||||||+|.|||+||||+++
T Consensus 1 ~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~L~nnl~nLgl~~~ 80 (797)
T cd04300 1 KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSLEFLMGRLLGNNLLNLGLYDE 80 (797)
T ss_pred ChHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEchhhhcchHHHHHHHhCCcHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCC
Q 007597 113 YADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFS 192 (596)
Q Consensus 113 ~~~~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~QvE~pd~Wl~~~~ 192 (596)
+++||++||+++++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|++|||+|.||+|+..++
T Consensus 81 ~~~~L~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl~~~~ 160 (797)
T cd04300 81 VREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGN 160 (797)
T ss_pred HHHHHHHhCCCHHHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCeEEEEEECCeEEECCC-Ccee--eeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcchh
Q 007597 193 PWEVVRHDVVFPVRFFGSVMVNPN-GTRK--WVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269 (596)
Q Consensus 193 pwe~~r~~~~~~V~f~g~v~~~~~-g~~~--~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~~y 269 (596)
|||+++++.+++|+|+|+++...+ |+.+ |++++.|+|+|||+|||||+++++|+||||+++ +...|||+.||.|+|
T Consensus 161 pwe~~r~~~~~~V~f~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~-~~~~~dl~~fn~gdy 239 (797)
T cd04300 161 PWEIRRPDVAVPVRFGGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAE-ASEEFDLDAFNRGDY 239 (797)
T ss_pred CceEecCCcEEEEEECCEEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEEEEEee-CCCCcCHHHhcCCch
Confidence 999999999999999999975443 6544 999999999999999999999999999999999 667899999999999
Q ss_pred hhHHhhhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHH
Q 007597 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPE 349 (596)
Q Consensus 270 ~~a~~~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~E 349 (596)
.+++++++.+|+||++|||+|++++||+|||+|||||||||+|||||+|++.+ .+++.|+++++||||||||||++||
T Consensus 240 ~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~--~~~~~l~~~~~ihlNDtHpalai~E 317 (797)
T cd04300 240 IRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTH--GPLSEFPDKVAIQLNDTHPALAIPE 317 (797)
T ss_pred hhHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhC--CChhhCCCceEEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 4799999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhccc
Q 007597 350 LMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSM 429 (596)
Q Consensus 350 lmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l 429 (596)
|||+|||++|++|++||+||+++|+||||||||||||+||++||+++||||++||++||++|++.++..+|.+++++.+|
T Consensus 318 lmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~~~~~~~~~~~~~~~~~~l 397 (797)
T cd04300 318 LMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRM 397 (797)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC-eeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccccccChhHHHHHHHh
Q 007597 430 CILDNNPKKP-VVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKW 508 (596)
Q Consensus 430 ~ii~~~~~~~-~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ 508 (596)
|||++ ++. +||||+||+++||+|||||+||++|+|+++|++|+++||+||+|||||||+|||+.+|||+|++||+++
T Consensus 398 ~ii~~--~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ 475 (797)
T cd04300 398 SIIEE--GGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITET 475 (797)
T ss_pred ccccc--CCCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhHHHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHh
Confidence 99987 433 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHH
Q 007597 509 LKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIY 588 (596)
Q Consensus 509 ig~~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ 588 (596)
||+ +|.+|++.|++|+++++|++|+++|+++|++||++|++||++++|+.+||++|||||||||||||||+||+|++++
T Consensus 476 ig~-~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~ 554 (797)
T cd04300 476 IGD-DWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIH 554 (797)
T ss_pred cCc-hhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHH
Confidence 997 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 007597 589 RYKKLKV 595 (596)
Q Consensus 589 ry~~ik~ 595 (596)
||.+||+
T Consensus 555 ~y~~i~~ 561 (797)
T cd04300 555 LYNRIKE 561 (797)
T ss_pred HHHHHHh
Confidence 9999986
No 4
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=4.8e-180 Score=1506.00 Aligned_cols=556 Identities=42% Similarity=0.743 Sum_probs=543.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEechhccccchHHHhhc
Q 007597 27 NEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGS 106 (596)
Q Consensus 27 ~~~~~ik~~i~~~l~~~~gk~~~~as~~~~Y~Ala~~vrd~l~~~W~~T~~~~~~~~~k~vyY~SmEfl~gr~l~nnl~n 106 (596)
.++++|++.|.+||.+++|+++.+||+.++|+|+|.+|||+|+++ ++.+.+.+.|+||||||||||||+|.|||+|
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~----~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~n 80 (798)
T PRK14985 5 FNKKQFQAALTRQWQRFGLNSAAEMTPRQWWQAVSAALAELLRAQ----PAAKPVANQRHVNYISMEFLIGRLTGNNLLN 80 (798)
T ss_pred CCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHH----HHHHhhcCCcEEEEechhhhccHHHHHHHHh
Confidence 478899999999999999999999999999999999999999998 5667788899999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeeccc
Q 007597 107 LDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAED 186 (596)
Q Consensus 107 Lg~~~~~~~~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~QvE~pd~ 186 (596)
||++++++|||++||+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|+||||+|.||.
T Consensus 81 lgl~~~~~~al~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~pd~ 160 (798)
T PRK14985 81 LGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDD 160 (798)
T ss_pred cCCHHHHHHHHHHcCCCHHHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccCCeEEEEEECCeEEECCCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCc
Q 007597 187 WLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFND 266 (596)
Q Consensus 187 Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~ 266 (596)
|+..++|||+++++..++|+|+|+|+.. +|+.+|++++.|.|+|||+|||||+|+++|+||||++++ ..+|||..||.
T Consensus 161 Wl~~~~pwe~~r~~~~~~V~f~G~v~~~-~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~~-~~~~~l~~fn~ 238 (798)
T PRK14985 161 WHRDSYPWFRHNEALDVQVGIGGKVTKQ-DGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQATH-AHPFDLTKFND 238 (798)
T ss_pred cccCCCCceecCCCceEEEeeCCEEEee-CCcEEEECCEEEEEEeccccccCCCCCceEEEEEeEcCC-CCccCHHHcCC
Confidence 9999999999999999999999999754 788899999999999999999999999999999999995 55999999999
Q ss_pred chhhhHHhhhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhh
Q 007597 267 GQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLA 346 (596)
Q Consensus 267 ~~y~~a~~~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpala 346 (596)
|+|.+++++++.+|+||++|||+|++++||+|||+|||||||||+|||||+|++.+ ++|+.|+++++|||||||||||
T Consensus 239 gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~--~~l~~l~~~~~ihlNDtHpala 316 (798)
T PRK14985 239 GDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAG--RKLHELPDYEVIQLNDTHPTIA 316 (798)
T ss_pred cchhhccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhhCCCCcEEEecCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999866 6899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhh
Q 007597 347 IPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKI 426 (596)
Q Consensus 347 i~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~ 426 (596)
+|||||+|||++|++||+||++|+++|+||||||||||||+||++||+++||||++||++||++|+..+...+|.+.+++
T Consensus 317 i~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in~~fl~~~~~~~~~d~~~~ 396 (798)
T PRK14985 317 IPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEINTRFKTLVEKTWPGDKKVW 396 (798)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCcHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCeeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccccccChhHHHHHH
Q 007597 427 PSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIIT 506 (596)
Q Consensus 427 ~~l~ii~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~ 506 (596)
.+||||++ + +||||+||+++||+|||||+||++|+++.||++|+++||++|+|||||||+|||+.+|||+|++||+
T Consensus 397 ~~~sii~~--~--~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~df~~l~p~kf~nvTNGVt~rrWl~~~np~L~~Li~ 472 (798)
T PRK14985 397 AKLAVVHD--K--QVRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLD 472 (798)
T ss_pred hhhhhccC--C--eeehHHHHHHhcchhHhhHHHHhchhHHhhhhhhHhhCCCccCCcCCCcCcchhhhhhCHHHHHHHH
Confidence 99999998 5 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhH
Q 007597 507 KWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGA 586 (596)
Q Consensus 507 ~~ig~~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~ 586 (596)
++||+ +|.+|++.|++|+++.+|++|+++|+++|++||.+|++||++++|+.+||++|||||||||||||||+||+|++
T Consensus 473 ~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~i 551 (798)
T PRK14985 473 KTLKK-EWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHI 551 (798)
T ss_pred HhcCc-chhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchhhHhhhhhhhhhhhHhhhh
Confidence 99997 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 007597 587 IYRYKKLKV 595 (596)
Q Consensus 587 i~ry~~ik~ 595 (596)
++||.+||+
T Consensus 552 i~~y~~i~~ 560 (798)
T PRK14985 552 LALYKEIRE 560 (798)
T ss_pred HHHHHHHHh
Confidence 999999986
No 5
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=3.3e-179 Score=1504.13 Aligned_cols=569 Identities=43% Similarity=0.764 Sum_probs=553.7
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEechhcccc
Q 007597 19 PAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGR 98 (596)
Q Consensus 19 ~~~~~~~~~~~~~ik~~i~~~l~~~~gk~~~~as~~~~Y~Ala~~vrd~l~~~W~~T~~~~~~~~~k~vyY~SmEfl~gr 98 (596)
|.+-....+++++|+++|.+||++++|+++++||+.++|+|||.+|||+++++|.+|++.+.+.+.|+||||||||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr 83 (815)
T PRK14986 4 PFTYASPTLSVEALKHSIAYKLMFTIGKDPVIANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGR 83 (815)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcEEEEEchhhhccH
Confidence 44555667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhcCCcHHHHHHHHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCC
Q 007597 99 TLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQ 178 (596)
Q Consensus 99 ~l~nnl~nLg~~~~~~~~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG 178 (596)
+|.|||+|||+++++++||++||+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.||
T Consensus 84 ~l~nnl~nlg~~~~~~~al~~lg~~l~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG 163 (815)
T PRK14986 84 TLSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNG 163 (815)
T ss_pred HHHHHHHhcCcHHHHHHHHHHcCCCHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccccccCCCcccccCCeEEEEEECCeEEECCCCce-eeeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCc
Q 007597 179 GQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTR-KWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAE 257 (596)
Q Consensus 179 ~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~-~~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~ 257 (596)
||+|.||+|+..++|||++|++.+++|+|+|+++.. |.. +|++++.|+|||||+|||||+|+++|+||||+++ +.+
T Consensus 164 ~Q~E~pd~w~~~~~pwe~~r~~~~~~V~f~g~~~~~--g~~~~w~~~~~v~avpyD~pipgy~t~~vn~lRLW~a~-~~~ 240 (815)
T PRK14986 164 RQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQE--GKKTRWIETEEILAVAYDQIIPGYDTDATNTLRLWSAQ-ASS 240 (815)
T ss_pred EEEEcCCCccCCCCceeEecCCcEEEEEeCCEEEec--CceeEeeCCeeEEEEeCCccccCCCCCceEEEEEEEee-cCc
Confidence 999999999999999999999999999999999753 633 3999999999999999999999999999999999 677
Q ss_pred cccccccCcchhhhHHhhhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEE
Q 007597 258 DFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQ 337 (596)
Q Consensus 258 ~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ih 337 (596)
+||+..||.|+|..++.+++.+|+||++|||+|++++||++||+|||||||||+|||||+|++.+ ++|+.|+++++||
T Consensus 241 ~fd~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di~r~~~~~~--~~l~~l~~~v~ih 318 (815)
T PRK14986 241 EINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQLH--KTYDNLADKIAIH 318 (815)
T ss_pred ccCHhhcccccHHHHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHHHHHHHHhC--CCHhhCCcccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999987 6899999999999
Q ss_pred eCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHh
Q 007597 338 LNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRS 417 (596)
Q Consensus 338 lNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~ 417 (596)
||||||||++|||||+|||++|++|++||++|+++|+||||||||||||+||++||+++||||++||++||++|+..++.
T Consensus 319 lNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~fl~~~~~ 398 (815)
T PRK14986 319 LNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQE 398 (815)
T ss_pred ecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChhhhcccccccCCCCCC-eeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccccc
Q 007597 418 TRSDLESKIPSMCILDNNPKKP-VVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRF 496 (596)
Q Consensus 418 ~~~~~~~~~~~l~ii~~~~~~~-~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl~~ 496 (596)
++|.+.+++.+||||++ ++. +||||+||+++||+|||||+||++|+++.||+||+.+||+||.|||||||+|||+.+
T Consensus 399 ~~~~~~~~~~~~sii~~--~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~df~~l~P~kf~niTNGV~~rrWl~~ 476 (815)
T PRK14986 399 QYPNDTDLLGRASIIDE--SNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFCNVTNGVTPRRWLAL 476 (815)
T ss_pred hCCCcHHHHhhhhcccc--CCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHHHHHHhhCCCcccccCCCCChhhHhhh
Confidence 99999999999999997 433 899999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHhcCCcccccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccc
Q 007597 497 CNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEY 576 (596)
Q Consensus 497 ~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heY 576 (596)
|||+|++||+++||+ +|.+|++.+++|+++.+|++|+++|+++|+++|.+|+++|++++|+.+||++||||||||||||
T Consensus 477 ~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~qakR~heY 555 (815)
T PRK14986 477 ANPSLSAVLDEHIGR-TWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEY 555 (815)
T ss_pred cCHHHHHHHHHhcCc-hhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceeeeehhhhhh
Confidence 999999999999997 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhhc
Q 007597 577 KRQLLNILGAIYRYKKLKV 595 (596)
Q Consensus 577 KRq~Lnil~~i~ry~~ik~ 595 (596)
|||+||+|++++||.+||+
T Consensus 556 KRq~LNil~~i~ry~~i~~ 574 (815)
T PRK14986 556 KRQLMNVLHVITRYNRIKA 574 (815)
T ss_pred hhhhHHHhhhHHHHHHHHh
Confidence 9999999999999999985
No 6
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=1.3e-159 Score=1330.50 Aligned_cols=474 Identities=54% Similarity=0.941 Sum_probs=436.3
Q ss_pred HHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCcc
Q 007597 116 ALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWE 195 (596)
Q Consensus 116 ~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~QvE~pd~Wl~~~~pwe 195 (596)
||++||+++++|+++|+||||||||||||||||||||||||+|++||||||+||+|+|+|.||+|+|.||+||..|||||
T Consensus 1 Al~~lg~~~~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pWe 80 (713)
T PF00343_consen 1 ALKELGFDLEELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPWE 80 (713)
T ss_dssp HHHHTT--HHHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TTS
T ss_pred ChhHhCCCHHHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEEECCeEEECCCCcee-eeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcchhhhHHh
Q 007597 196 VVRHDVVFPVRFFGSVMVNPNGTRK-WVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQ 274 (596)
Q Consensus 196 ~~r~~~~~~V~f~g~v~~~~~g~~~-~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~~y~~a~~ 274 (596)
++|++.+|+|+|+|+|+ +.+|+.. |+++++|+|+|||+|||||+|++||+||||+|+ ++++|||..||.|+|.+|++
T Consensus 81 ~~r~~~~~~V~f~G~v~-~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~vn~LRLw~a~-~~~~fd~~~fn~gdy~~a~~ 158 (713)
T PF00343_consen 81 IRRPDESYEVKFGGRVE-DDGGRKVRWEDGETVLAVPYDMPIPGYRTKTVNTLRLWSAE-PSEEFDLESFNRGDYIKAVE 158 (713)
T ss_dssp EEEGGGEEEEEESEEEE--EETTEEEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-ESSSTTHHHHHTTCHHHHHH
T ss_pred EecCCceEEEeccceEE-ecCCCcccccCCeEEEEEecCceeecCCCCceEEEEEeccC-CCcccChhhcCCCcHHHHHH
Confidence 99999999999999998 4445544 999999999999999999999999999999999 88899999999999999999
Q ss_pred hhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHHHHHHH
Q 007597 275 LHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLL 354 (596)
Q Consensus 275 ~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~ElmR~l 354 (596)
+++.+++||++|||+|++++||+|||||||||||||+|||||+|++.+ .+++.||++++||||||||||++|||||+|
T Consensus 159 ~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lqdiir~~~~~~--~~~~~~~~~~~ihlNdtHpa~ai~ElmR~L 236 (713)
T PF00343_consen 159 EKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKSH--GDLREFPDKVVIHLNDTHPAFAIPELMRIL 236 (713)
T ss_dssp HHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGHHHHEEEEEESSTTTTHHHHHHHHH
T ss_pred HHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHHHHHHHHHHhC--CChHHCCcceEEeecCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccC
Q 007597 355 MDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDN 434 (596)
Q Consensus 355 ~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~ 434 (596)
||++|++|++||+||+++|+||||||||||||+||++||+++||||++||++||++|+..+...+|.|.+++.+|+++++
T Consensus 237 ~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~d~~~~~~l~ii~~ 316 (713)
T PF00343_consen 237 MDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPGDEDQIRRLSIIEE 316 (713)
T ss_dssp HHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHSSEET
T ss_pred HHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcCcchhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCC-eeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcc
Q 007597 435 NPKKP-VVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQ 513 (596)
Q Consensus 435 ~~~~~-~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~ 513 (596)
+++ .||||+||+++||+|||||+|||+|+|+++|++|+++||++|+|||||||+|||+++|||+|++||+++||+ +
T Consensus 317 --~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~-~ 393 (713)
T PF00343_consen 317 --GNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGD-D 393 (713)
T ss_dssp --SSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTS-G
T ss_pred --cchhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhcc-c
Confidence 545 999999999999999999999999999999999999999999999999999999999999999999999996 9
Q ss_pred cccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHHHh
Q 007597 514 WVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKL 593 (596)
Q Consensus 514 W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~~i 593 (596)
|.+|++.|++|.++++|+.|+++|.++|+++|.+|+++|++++|+.+||++|||+|||||||||||+||+|++++||.+|
T Consensus 394 W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~ri 473 (713)
T PF00343_consen 394 WRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRI 473 (713)
T ss_dssp GGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 007597 594 KVL 596 (596)
Q Consensus 594 k~~ 596 (596)
|++
T Consensus 474 k~~ 476 (713)
T PF00343_consen 474 KNN 476 (713)
T ss_dssp HHS
T ss_pred Hhc
Confidence 863
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-144 Score=1207.97 Aligned_cols=514 Identities=46% Similarity=0.756 Sum_probs=492.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEechhccccchHHHhhcC
Q 007597 28 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSL 107 (596)
Q Consensus 28 ~~~~ik~~i~~~l~~~~gk~~~~as~~~~Y~Ala~~vrd~l~~~W~~T~~~~~~~~~k~vyY~SmEfl~gr~l~nnl~nL 107 (596)
+.++|+..|..++.+..|+++..||+++||.|++..||+.+..+|.+|++.+.+++.|+|||+|||||+||++.|||.|+
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~yy~s~efL~grl~~~~l~n~ 84 (750)
T COG0058 5 RLEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQVYYLSMEFLIGRLLGNNLWNL 84 (750)
T ss_pred cHHHHHHHHHHHHHHHhccChhhCCHHHHHHHhhHHHHHHHhcCHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcchhhh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccc
Q 007597 108 DIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDW 187 (596)
Q Consensus 108 g~~~~~~~~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~QvE~pd~W 187 (596)
|+++.++++|+++|+++.|+.+.|+||++| ||||||||||||||||||+|++||||+|+||||+|++.||||+|.|+.|
T Consensus 85 g~~~~~~~~l~~~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w 163 (750)
T COG0058 85 GIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEW 163 (750)
T ss_pred cchHHHHhhHHhhhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999998899999999999
Q ss_pred cccCCCcccccCCeEEEEEECCeEEECCCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcc
Q 007597 188 LEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDG 267 (596)
Q Consensus 188 l~~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~ 267 (596)
+..++|||+.|.. + |+|||+||+||++ ++|++|||+++++..+|+|..||.+
T Consensus 164 ~~~~~pwe~~r~~------------------------~---a~~~d~~V~g~~~-~~~~lrlW~a~~~~~~~~l~~~n~~ 215 (750)
T COG0058 164 LKYGNPWEFLRDA------------------------E---GVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVG 215 (750)
T ss_pred hccCCcceeeccc------------------------C---CceeeeeEEeccC-cEEEEEEEEEecCccceEeecCCCc
Confidence 9999999987640 1 5899999999999 9999999999977768888888877
Q ss_pred hhhhHHhhhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhH
Q 007597 268 QYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAI 347 (596)
Q Consensus 268 ~y~~a~~~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai 347 (596)
++.+++|+||++|||+|| +++||+|||||||||+|+|+++++..++ +++.++ .|||||||||++
T Consensus 216 ------e~~~~~~~iT~~LYp~Ds----~elRl~Qeyfl~~agvq~I~~~~~~~~~--~~~~~~----~~lNdtHpa~~i 279 (750)
T COG0058 216 ------ENKNDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH--DLDVLA----DHLNDTHPALAI 279 (750)
T ss_pred ------ccchhhhhHHhhcCCCCc----HHHHHhhhheeeeHHHHHHHHHhhhccc--cccchh----hhhcCCChhHhH
Confidence 356889999999999998 7999999999999999999999655542 555554 569999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhc
Q 007597 348 PELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIP 427 (596)
Q Consensus 348 ~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~ 427 (596)
|||||+|+|++|++|++||++|+++|+||||||||||||+||++||+++||||++||++||.+|+..++..++++ ++.
T Consensus 280 ~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~~l~~~~~~~~~~--~~~ 357 (750)
T COG0058 280 PELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFLPEVRLLYLGD--LIR 357 (750)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhhhhHHHHhhcccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred ccccccCCCCCCeeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccccccChhHHHHHHH
Q 007597 428 SMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITK 507 (596)
Q Consensus 428 ~l~ii~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~ 507 (596)
++++|++ |+||+||+++||+|||||+||+||+|+|.|++|+.+||+||+|||||||+|||+.+|||+|++++++
T Consensus 358 ~~~~i~~------v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~p~~i~nvTNGIt~rrWl~~~n~~L~~~~~~ 431 (750)
T COG0058 358 RGSPIEE------VNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDE 431 (750)
T ss_pred cCCcccc------eehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccCccccccccCCcCCchhhhhhhHHHHHHHhh
Confidence 9999874 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHH
Q 007597 508 WLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAI 587 (596)
Q Consensus 508 ~ig~~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i 587 (596)
.+|+ .|..+++.+.++..+++|+.|++.|+++|.+||++|++++++++|+.+||++|||||||||||||||+||+++++
T Consensus 432 ~ig~-~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRiheYKRq~Lnl~~i~ 510 (750)
T COG0058 432 KIGD-EWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRIHEYKRQLLNLLDIE 510 (750)
T ss_pred hhhh-hhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceeeeehhhhhhhhhHHhHhhHH
Confidence 9997 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 007597 588 YRYKKLKV 595 (596)
Q Consensus 588 ~ry~~ik~ 595 (596)
++|..||+
T Consensus 511 ~ly~~i~~ 518 (750)
T COG0058 511 RLYRILKE 518 (750)
T ss_pred HHHHHHhc
Confidence 99999983
No 8
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=5.4e-97 Score=843.12 Aligned_cols=424 Identities=25% Similarity=0.399 Sum_probs=361.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhcccCCCcEEEEEechhccccchHHHhhcCCcHHHHHHHHHHcCCChHHHHhhhcc
Q 007597 55 QAFFATAESVRDRLIQ-QWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 133 (596)
Q Consensus 55 ~~Y~Ala~~vrd~l~~-~W~~T~~~~~~~~~k~vyY~SmEfl~gr~l~nnl~nLg~~~~~~~~l~~lg~~l~~l~~~E~d 133 (596)
..|.++....++++.+ .|..+. . ....+.++||||||++..+|+
T Consensus 58 ~~~~~~~~~~~~y~~~~~~~~~~-~--~~~~~~~aYFs~E~gl~~~lp-------------------------------- 102 (778)
T cd04299 58 ARYDRVLEDFDAYLEEPTWYQGR-N--DGEPLVAAYFSMEFGLHESLP-------------------------------- 102 (778)
T ss_pred HHHHHHHHHHHHHhccCcccccc-c--cCCCCeeEEeccccccCCCCC--------------------------------
Confidence 3444555555555432 244321 1 123456669999999999984
Q ss_pred CCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEe-CCeeeeecccccccCCCcccccCCeEEEEEECCeEE
Q 007597 134 AALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKIT-KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVM 212 (596)
Q Consensus 134 ~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~-dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~g~v~ 212 (596)
+||||||||||||||||||||+|++||||+|+||||+|+|+ ||||+|.++.|...+.||+..
T Consensus 103 --iYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~--------------- 165 (778)
T cd04299 103 --IYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV--------------- 165 (778)
T ss_pred --ccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE---------------
Confidence 99999999999999999999999999999999999999998 999999999999998898641
Q ss_pred ECCCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcchhhhHHhhhhhhccceeeecCCCCc
Q 007597 213 VNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDST 292 (596)
Q Consensus 213 ~~~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~D~~ 292 (596)
.+.+|+. .++ .+|++|+ .+++|+|.++++ .+++++||++.+.|. ..+|.||++||++|+
T Consensus 166 ~~~~G~~------~~v----~v~l~g~----~v~~rvw~~~vg--~v~lylLDtd~~~n~----~~~R~iT~~LYg~D~- 224 (778)
T cd04299 166 RDADGEP------VRV----SVELPGR----TVYARVWKAQVG--RVPLYLLDTDIPENS----PDDRGITDRLYGGDQ- 224 (778)
T ss_pred ecCCCCe------EEE----EEeeCCC----ceEEEEEEEEcC--CCCEEEecCCccccc----hhhcccccCCCCCcH-
Confidence 2345652 232 4778887 689999999976 488999999998664 678999999999984
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhc
Q 007597 293 EEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRT 372 (596)
Q Consensus 293 ~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~ 372 (596)
++||+||||||+||++.+ +++ | + ++.+|||||+||||+++||||+||+++|++|++||++|+.+
T Consensus 225 ----~~Rl~Qe~~Lg~agl~~L-r~l----g---~----~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~ 288 (778)
T cd04299 225 ----ETRIQQEILLGIGGVRAL-RAL----G---I----KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRAS 288 (778)
T ss_pred ----HHHHHHHHHHHHHHHHHH-HHh----C---C----CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCe
Confidence 789999999999999854 443 1 1 58899999999999999999999998899999999999999
Q ss_pred eeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCC--Ceeeeehhhhhc
Q 007597 373 VAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKK--PVVRMANLCVVS 450 (596)
Q Consensus 373 ~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~--~~~~Ma~LAl~~ 450 (596)
|+||||||+|+|||+||.++|+++||+|++ .+|++++.+..+++..+ ++ ..|||+++||++
T Consensus 289 tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~---------------~lgl~~~~~~~lg~e~~--~~~~~~~nM~~laL~~ 351 (778)
T cd04299 289 TVFTTHTPVPAGHDRFPPDLVERYFGPYAR---------------ELGLSRDRFLALGRENP--GDDPEPFNMAVLALRL 351 (778)
T ss_pred EEEecCCchHHHhhhCCHHHHHHHhhHHHH---------------HcCCCHHHHhhhccccc--cCccCceeHHHHHHHh
Confidence 999999999999999999999999998744 36889999999998764 22 279999999999
Q ss_pred CCchHhHHHHhHHHHHHhhhcchhhhcCCC---CcccccccCccccccccChhHHHHHHHhcCCcccccCcchHH--hhh
Q 007597 451 AHTVNGVAQLHSDILKADLFADYVSLWPNK---LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLV--GLR 525 (596)
Q Consensus 451 S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k---~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~--~l~ 525 (596)
|++|||||+||++|+|+ ||++|+..+|.+ |++||||||++||+ ||++.+||++++|+ +|.++++... +..
T Consensus 352 S~~vNgVS~lHg~vsr~-mf~~~~~g~p~~~~~i~~ITNGVh~~~W~---~P~~~~l~~~~~g~-~w~~~~~~~~~~~~~ 426 (778)
T cd04299 352 AQRANGVSRLHGEVSRE-MFAGLWPGFPVEEVPIGHVTNGVHVPTWV---APEMRELYDRYLGG-DWRERPTDPELWEAV 426 (778)
T ss_pred cCeeeeecHHHHHHHHH-HhhhhhccCCcccCceeceeCCcchhhhc---CHHHHHHHHHhcCc-chhhccchHHHHhhh
Confidence 99999999999999997 688888888765 99999999999998 79999999999997 8999887533 333
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------CCcCCCCCccccceeccccccccccchhhHHH
Q 007597 526 QFADNTELQAEWESAKMASKKHLADYIWRVT-----------------GVTIDPNSLFDIQVKRIHEYKRQLLNILGAIY 588 (596)
Q Consensus 526 ~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~-----------------g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ 588 (596)
..++|+++ | ++|+++|.+|+++|++++ +..+||++||||||||||+|||++| +|++++
T Consensus 427 ~~i~d~~l---w-~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~L-il~dl~ 501 (778)
T cd04299 427 DDIPDEEL---W-EVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARRFATYKRATL-LLRDPE 501 (778)
T ss_pred cCCCcHHH---H-HHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeecchhhhhHHH-HHHHHH
Confidence 34678886 7 699999999999999887 5679999999999999999999999 999999
Q ss_pred HHHHhh
Q 007597 589 RYKKLK 594 (596)
Q Consensus 589 ry~~ik 594 (596)
||.+|+
T Consensus 502 rl~~il 507 (778)
T cd04299 502 RLKRLL 507 (778)
T ss_pred HHHHHh
Confidence 999986
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=5.1e-95 Score=812.78 Aligned_cols=397 Identities=23% Similarity=0.385 Sum_probs=348.1
Q ss_pred EEEEechhccccchHHHhhcCCcHHHHHHHHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEecc
Q 007597 87 TYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRY 166 (596)
Q Consensus 87 vyY~SmEfl~gr~l~nnl~nLg~~~~~~~~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y 166 (596)
|+||||||.+..+|+ +||||||||||||||||||||+|++||||+|
T Consensus 1 ~ayf~~E~g~~~~~p----------------------------------~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y 46 (601)
T TIGR02094 1 VAYFSMEYGLHESLP----------------------------------IYSGGLGVLAGDHLKSASDLGLPLVAVGLLY 46 (601)
T ss_pred CeEEeeccccCCCCC----------------------------------ccCchHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 689999999988884 9999999999999999999999999999999
Q ss_pred CCcceEEEEe-CCeeeeecccccccCCCcccccCCeEEEEEECCeEEECCCCceeeeCCeEEEEEEEeeccCCCCCCceE
Q 007597 167 RYGLFKQKIT-KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTI 245 (596)
Q Consensus 167 ~~GyF~Q~I~-dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~ 245 (596)
+||||+|+|+ ||||+|.|++|+..+.||+. | .+.+|+ . ++|++|++|. ++
T Consensus 47 ~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~--------~-------~~~~g~-------~---~~~~v~i~g~----~~ 97 (601)
T TIGR02094 47 KQGYFRQRLDEDGWQQEAYPNNDFESLPIEK--------V-------LDTDGK-------W---LKISVRIRGR----DV 97 (601)
T ss_pred CCCceeEEECCCCceeecCCccccCCCceEE--------E-------ecCCCC-------e---EEEEEecCCc----EE
Confidence 9999999998 99999999999999999975 1 234564 2 4789999994 89
Q ss_pred EEEEEecccCCccccccccCcchhhhHHhhhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCc
Q 007597 246 SLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGR 325 (596)
Q Consensus 246 ~lrLW~a~v~~~~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~ 325 (596)
++|+|+++++ .+++++||++...| ...+|.||++|||+|. ++|++||||||+||+|++ +
T Consensus 98 ~~rlw~~~~~--~v~lylld~~~~~n----~~~~R~it~~LY~~D~-----~~R~~Qe~fl~~a~l~~l-~--------- 156 (601)
T TIGR02094 98 YAKVWRVQVG--RVPLYLLDTNIPEN----SEDDRWITGRLYGGDK-----EMRIAQEIVLGIGGVRAL-R--------- 156 (601)
T ss_pred EEEEEEEEeC--CCCEEEecCCCccc----chhhcCccCCCCCCCH-----HHHHHHHHHHHHHHHHHH-H---------
Confidence 9999999975 58889999887444 5778999999999984 789999999999999864 2
Q ss_pred ccccCC-CCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHH
Q 007597 326 QWSEFP-SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEII 404 (596)
Q Consensus 326 ~l~~l~-~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii 404 (596)
.++ ++.+||+||+||||+++||||+++ ++|++|++||++|+.+|+||||||+|+|+|+||.++|.++||+ ++++
T Consensus 157 ---~l~~~pdviH~ND~Htal~~~el~r~l~-~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~-~~~~ 231 (601)
T TIGR02094 157 ---ALGIDPDVYHLNEGHAAFVTLERIRELI-AQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGD-YAAN 231 (601)
T ss_pred ---HcCCCceEEEeCCchHHHHHHHHHHHHH-HcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhh-hhhH
Confidence 222 789999999999999999999999 7899999999999999999999999999999999999999998 4666
Q ss_pred HHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCC---C
Q 007597 405 EEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK---L 481 (596)
Q Consensus 405 ~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k---~ 481 (596)
.+|+.+++..+...++ + ...+|||+++||++|++|||||++|+++++ .+|++|++++|.+ |
T Consensus 232 ~gl~~~~~~~~~~~~~-------------~--~~~~vnm~~lai~~S~~vngVS~lh~~v~~-~l~~~l~~~~~~~~~~i 295 (601)
T TIGR02094 232 LGLPREQLLALGRENP-------------D--DPEPFNMTVLALRLSRIANGVSKLHGEVSR-KMWQFLYPGYEEEEVPI 295 (601)
T ss_pred hCCCHHHHHhhhhhcc-------------C--ccCceeHHHHHHHhCCeeeeecHHHHHHHH-HHHHhhhhhcccccCCc
Confidence 6666666554332221 0 112799999999999999999999999998 6799999999987 9
Q ss_pred cccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--
Q 007597 482 QNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVT-- 559 (596)
Q Consensus 482 ~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~-- 559 (596)
.+||||||+++|. ||.++.|+++++++ +|.+++++++.|.++ |....+++.++|++||.+|+++|++++|+.
T Consensus 296 ~gItNGId~~~W~---~~~~~~l~~~y~~~-~w~~~~~~~~~~~~~--~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~ 369 (601)
T TIGR02094 296 GYVTNGVHNPTWV---APELRDLYERYLGE-NWRELLADEELWEAI--DDIPDEELWEVHLKLKARLIDYIRRRLRERWL 369 (601)
T ss_pred cceeCCccccccC---CHHHHHHHHHhCCc-chhccchhhhhhhhc--ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999998 79999999999997 899999998888775 222334444799999999999999998877
Q ss_pred ---------------CCCCCccccceeccccccccccchhhHHHHHHHhhc
Q 007597 560 ---------------IDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKV 595 (596)
Q Consensus 560 ---------------ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~~ik~ 595 (596)
+||+++||+||||||+||||+| ||+++++|.+|+.
T Consensus 370 ~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~~yKr~dL-il~~i~~l~~i~~ 419 (601)
T TIGR02094 370 RRGADAAILMATDRFLDPDVLTIGFARRFATYKRADL-IFRDLERLARILN 419 (601)
T ss_pred hccCcchhhhhhccccCCCCcEEEEEEcchhhhhHHH-HHHHHHHHHHHhh
Confidence 9999999999999999999999 9999999999863
No 10
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.23 E-value=9.2e-11 Score=128.09 Aligned_cols=307 Identities=18% Similarity=0.166 Sum_probs=182.1
Q ss_pred CCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCcccccCCeEEEEEECCeEEE
Q 007597 134 AALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMV 213 (596)
Q Consensus 134 ~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~g~v~~ 213 (596)
|-.-.||||...++.-++++.+|..+..+.-+|..+.-+. ..+.+. ...+.|.++++
T Consensus 11 p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~----~~~~~~----------------~~~~~~~~~~~--- 67 (476)
T cd03791 11 PFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDEL----RGQLLV----------------LRLFGVPVGGR--- 67 (476)
T ss_pred ccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHh----ccCeEE----------------EEEEeeccCCc---
Confidence 4447999999999999999999999999999998653110 000000 00112222221
Q ss_pred CCCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcchhhhHHhhhhhhccceeeecCCCCch
Q 007597 214 NPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTE 293 (596)
Q Consensus 214 ~~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~D~~~ 293 (596)
...+++|...++. ++++.++...+.+ +......+...|.+
T Consensus 68 ------------------------------~~~~~~~~~~~~g--v~~~~l~~~~~~~----~~~~~~~~~~~~~~---- 107 (476)
T cd03791 68 ------------------------------PEYVGVFELPVDG--VPVYFLDNPDYFD----RPGLYDDSGYDYED---- 107 (476)
T ss_pred ------------------------------eeEEEEEEEEeCC--ceEEEEcChHHcC----CCCCCCccCCCCcc----
Confidence 2233444333221 2233333222211 01111123344432
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccC-CCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhc
Q 007597 294 EGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEF-PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRT 372 (596)
Q Consensus 294 ~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l-~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~ 372 (596)
+..+..+|+.|+++ ++ ..+ .++.+||.||.|++++...+-+...+ . ...+..
T Consensus 108 -----~~~~~~~f~~~~~~-~l------------~~~~~~pDviH~hd~~t~~~~~~l~~~~~~-~--------~~~~~~ 160 (476)
T cd03791 108 -----NAERFALFSRAALE-LL------------RRLGWKPDIIHCHDWHTGLVPALLKEKYAD-P--------FFKNIK 160 (476)
T ss_pred -----HHHHHHHHHHHHHH-HH------------HhcCCCCcEEEECchHHHHHHHHHHHhhcc-c--------cCCCCC
Confidence 34445788888874 22 222 36789999999999888766543321 0 112457
Q ss_pred eeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCC
Q 007597 373 VAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAH 452 (596)
Q Consensus 373 ~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~ 452 (596)
++||.|++.+.| .+|...+...... ++....+.-.. ....++|...++..|.
T Consensus 161 ~v~tiH~~~~~g--~~~~~~~~~~~~~-----------------------~~~~~~~~~~~---~~~~~~~~~~~~~~ad 212 (476)
T cd03791 161 TVFTIHNLAYQG--VFPLEALEDLGLP-----------------------WEELFHIDGLE---FYGQVNFLKAGIVYAD 212 (476)
T ss_pred EEEEeCCCCCCC--CCCHHHHHHcCCC-----------------------ccchhhhcccc---cCCcccHHHHHHHhcC
Confidence 999999998888 4666655543211 00001111011 1117899999999999
Q ss_pred chHhHHHHhHHHHHHhhh----cchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccC
Q 007597 453 TVNGVAQLHSDILKADLF----ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFA 528 (596)
Q Consensus 453 ~vNGVS~lH~ev~k~~~f----~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~ 528 (596)
.++.||..+.+.+.+..+ ..+....+.++..|+|||+...|-....+.+...++
T Consensus 213 ~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~---------------------- 270 (476)
T cd03791 213 AVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYS---------------------- 270 (476)
T ss_pred cCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCC----------------------
Confidence 999999998886653210 001122357899999999999996322222111100
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHH
Q 007597 529 DNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 591 (596)
Q Consensus 529 ~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~ 591 (596)
... + ..|..+|..| +++.|...+++..+.+++-|+.++|+..+ ++..+.+..
T Consensus 271 -~~~----~-~~~~~~k~~l----~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~-li~a~~~l~ 322 (476)
T cd03791 271 -ADD----L-EGKAENKAAL----QEELGLPVDPDAPLFGFVGRLTEQKGIDL-LLEALPELL 322 (476)
T ss_pred -ccc----c-ccHHHHHHHH----HHHcCCCcCCCCCEEEEEeeccccccHHH-HHHHHHHHH
Confidence 111 3 3566777665 46778888899999999999999999998 888877654
No 11
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.17 E-value=3.9e-10 Score=123.86 Aligned_cols=301 Identities=15% Similarity=0.158 Sum_probs=179.0
Q ss_pred CCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCcccccCCeEEEEEECCeEEEC
Q 007597 135 ALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVN 214 (596)
Q Consensus 135 ~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~ 214 (596)
-.-.||||.-.++.-++++.+|.-+..+.-+|....-+ |. .. . .......|.++|
T Consensus 13 ~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~--------------~~---~~--~-~~~~~~~~~~~~----- 67 (473)
T TIGR02095 13 FAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDE--------------VD---DQ--V-KVVELVDLSVGP----- 67 (473)
T ss_pred ccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhh--------------hc---cC--e-EEEEEEEEeecC-----
Confidence 35589999999999999999999999999999864210 00 00 0 000111222222
Q ss_pred CCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcchhhhHHhhhhhhccceeeecCCCCchh
Q 007597 215 PNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEE 294 (596)
Q Consensus 215 ~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~D~~~~ 294 (596)
...++++|...++. ++++.++...|.+ |. ..+|++|..
T Consensus 68 ----------------------------~~~~~~~~~~~~~~--v~~~~i~~~~~~~--------r~--~~~y~~~~~-- 105 (473)
T TIGR02095 68 ----------------------------RTLYVKVFEGVVEG--VPVYFIDNPSLFD--------RP--GGIYGDDYP-- 105 (473)
T ss_pred ----------------------------ceeEEEEEEEEECC--ceEEEEECHHHcC--------CC--CCCCCCCCC--
Confidence 13445566554432 3343343333222 11 247875221
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhcee
Q 007597 295 GKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVA 374 (596)
Q Consensus 295 GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~ 374 (596)
-.+.+-.+|+.|+++ ++++. . ..+.+||.||.|++++...+ +... +.. +..++
T Consensus 106 ---d~~~r~~~f~~a~~~-~~~~~---------~--~~~DiiH~hdw~~~~~~~~l-~~~~---~~~--------~~~~v 158 (473)
T TIGR02095 106 ---DNAERFAFFSRAAAE-LLSGL---------G--WQPDVVHAHDWHTALVPALL-KAVY---RPN--------PIKTV 158 (473)
T ss_pred ---CHHHHHHHHHHHHHH-HHHhc---------C--CCCCEEEECCcHHHHHHHHH-Hhhc---cCC--------CCCEE
Confidence 123334789988875 22221 0 25679999999999887654 2221 110 35689
Q ss_pred eeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCCch
Q 007597 375 YTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTV 454 (596)
Q Consensus 375 fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~~v 454 (596)
||.|++...| .+|.+.+..+ +.+.+.+.... .+. ...++|...++..|..+
T Consensus 159 ~TiH~~~~~g--~~~~~~~~~~-----------------------~~~~~~~~~~~-~~~---~~~~~~~k~~~~~ad~v 209 (473)
T TIGR02095 159 FTIHNLAYQG--VFPADDFSEL-----------------------GLPPEYFHMEG-LEF---YGRVNFLKGGIVYADRV 209 (473)
T ss_pred EEcCCCccCC--cCCHHHHHHc-----------------------CCChHHcCchh-hhc---CCchHHHHHHHHhCCcC
Confidence 9999998766 4666655431 11111110000 111 11688888999999999
Q ss_pred HhHHHHhHHHHHHhhhcc----hhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCC
Q 007597 455 NGVAQLHSDILKADLFAD----YVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530 (596)
Q Consensus 455 NGVS~lH~ev~k~~~f~~----~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d 530 (596)
+.||.-+.+-+.+..+.. +....+.++.-|.|||+..+|- |.-.. ++.. . +..+
T Consensus 210 ~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~----p~~~~----~~~~-~-------------~~~~ 267 (473)
T TIGR02095 210 TTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWN----PATDP----YLKA-N-------------YSAD 267 (473)
T ss_pred eecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccC----CCCCc----cccc-C-------------cCcc
Confidence 999998877554321110 1122467899999999999994 54211 1111 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHH
Q 007597 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 591 (596)
Q Consensus 531 ~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~ 591 (596)
.| +-|..+|..| +++.|+..+++..+.+++-|+.++|...+ ++..+.++.
T Consensus 268 -----~~-~~k~~~k~~l----~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~-li~a~~~l~ 317 (473)
T TIGR02095 268 -----DL-AGKAENKEAL----QEELGLPVDDDVPLFGVISRLTQQKGVDL-LLAALPELL 317 (473)
T ss_pred -----ch-hhhhhhHHHH----HHHcCCCccCCCCEEEEEecCccccChHH-HHHHHHHHH
Confidence 13 2455555544 66778888889999999999999999998 888877664
No 12
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.91 E-value=2.3e-08 Score=110.08 Aligned_cols=205 Identities=19% Similarity=0.205 Sum_probs=127.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhccCcccccC-CCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeee
Q 007597 298 LRLKQQFFLCSASLQDMILRFKERKSGRQWSEF-PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYT 376 (596)
Q Consensus 298 lRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l-~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fT 376 (596)
+|+. ||+.|+++- + ..+ .++.+||.||.|++++...+-+.+ . .+ .....++||
T Consensus 99 ~r~~---~f~~~~~~~-~------------~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~-~~--------~~~~~~v~T 152 (466)
T PRK00654 99 ERFA---FFSWAAAEF-A------------EGLDPRPDIVHAHDWHTGLIPALLKEKY-W-RG--------YPDIKTVFT 152 (466)
T ss_pred HHHH---HHHHHHHHH-H------------HhcCCCCceEEECCcHHHHHHHHHHHhh-h-cc--------CCCCCEEEE
Confidence 5764 899988852 2 222 267899999999999877654322 1 11 123469999
Q ss_pred eccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCCchHh
Q 007597 377 NHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNG 456 (596)
Q Consensus 377 nHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~~vNG 456 (596)
.|++...| .|+.+.+..+ +.+.+.+. ....+. ...+++...+++.|..++.
T Consensus 153 iH~~~~~g--~~~~~~~~~~-----------------------~~~~~~~~-~~~~~~---~~~~~~~~~~~~~ad~vit 203 (466)
T PRK00654 153 IHNLAYQG--LFPAEILGEL-----------------------GLPAEAFH-LEGLEF---YGQISFLKAGLYYADRVTT 203 (466)
T ss_pred cCCCcCCC--cCCHHHHHHc-----------------------CCChHHcC-chhhhc---CCcccHHHHHHHhcCcCee
Confidence 99997666 4666655432 11111110 000000 0157888889999999999
Q ss_pred HHHHhHHHHHHhhhc----chhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCCHH
Q 007597 457 VAQLHSDILKADLFA----DYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTE 532 (596)
Q Consensus 457 VS~lH~ev~k~~~f~----~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d~~ 532 (596)
||.-+.+-+++..+. .+....++|+.-|.|||+...|- |.-.. .+.. .+ +..
T Consensus 204 vS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~----p~~~~----~~~~--------------~~--~~~ 259 (466)
T PRK00654 204 VSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWN----PETDP----LLAA--------------NY--SAD 259 (466)
T ss_pred eCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccC----CccCc----cccc--------------cc--Chh
Confidence 999887755532221 11223467899999999999994 53211 1110 00 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHH
Q 007597 533 LQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 591 (596)
Q Consensus 533 ~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~ 591 (596)
.+ +-|..+|..| +++.|+. +++..+.+++-|+.++|...+ ++..+.++.
T Consensus 260 ---~~-~~k~~~k~~l----~~~~gl~-~~~~~~i~~vGRl~~~KG~~~-li~a~~~l~ 308 (466)
T PRK00654 260 ---DL-EGKAENKRAL----QERFGLP-DDDAPLFAMVSRLTEQKGLDL-VLEALPELL 308 (466)
T ss_pred ---hh-hchHHHHHHH----HHHhCCC-CCCCcEEEEeeccccccChHH-HHHHHHHHH
Confidence 13 2456666554 4566765 457889999999999999998 888776654
No 13
>PRK14098 glycogen synthase; Provisional
Probab=98.80 E-value=9.2e-08 Score=106.54 Aligned_cols=207 Identities=17% Similarity=0.220 Sum_probs=134.2
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCC-CCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceee
Q 007597 297 LLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP-SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAY 375 (596)
Q Consensus 297 elRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~-~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~f 375 (596)
-.|+ .||+.|.++- +..++ .+.+||.||-|++++.+ +++....... .+ .+-.++|
T Consensus 121 ~~rf---~~f~~a~l~~-------------~~~~~~~pDiiH~hdw~t~l~~~-~l~~~~~~~~-----~~--~~~~~V~ 176 (489)
T PRK14098 121 AEKV---IFFNVGVLET-------------LQRLGWKPDIIHCHDWYAGLVPL-LLKTVYADHE-----FF--KDIKTVL 176 (489)
T ss_pred HHHH---HHHHHHHHHH-------------HHhcCCCCCEEEecCcHHHHHHH-HHHHHhhhcc-----cc--CCCCEEE
Confidence 3566 6898888742 22233 67899999999999877 4544321110 00 1346999
Q ss_pred eeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCCchH
Q 007597 376 TNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVN 455 (596)
Q Consensus 376 TnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~~vN 455 (596)
|.|++...| .||...+..++|..+ ...+ .... + .+|+...+++.|..|+
T Consensus 177 TiHn~~~qg--~~~~~~~~~~~~~~~----------~~~~--------------~~~~---~--~~n~lk~~i~~ad~Vi 225 (489)
T PRK14098 177 TIHNVYRQG--VLPFKVFQKLLPEEV----------CSGL--------------HREG---D--EVNMLYTGVEHADLLT 225 (489)
T ss_pred EcCCCcccC--CCCHHHHHHhCCHHh----------hhhh--------------hhcC---C--cccHHHHHHHhcCcce
Confidence 999987766 477777766665421 1110 0000 2 6888899999999999
Q ss_pred hHHHHhHHHHHHh-hh----cchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCC
Q 007597 456 GVAQLHSDILKAD-LF----ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530 (596)
Q Consensus 456 GVS~lH~ev~k~~-~f----~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d 530 (596)
.||.-..+-+++. .+ +..-...+.++.-|.|||....|- |.-...+.+. +-.+
T Consensus 226 tVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~----p~~d~~~~~~------------------~~~~ 283 (489)
T PRK14098 226 TTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWN----PSTDKLIKKR------------------YSIE 283 (489)
T ss_pred eeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccC----Cccccccccc------------------CCcc
Confidence 9998887755531 10 111111367899999999999994 5321111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHH
Q 007597 531 TELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 591 (596)
Q Consensus 531 ~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~ 591 (596)
. + +-|..+|..| +++.|...+++....+++-|+..+|...+ ++..+.++.
T Consensus 284 -~----~-~~k~~~k~~l----~~~lgl~~~~~~~~i~~vgRl~~~KG~d~-li~a~~~l~ 333 (489)
T PRK14098 284 -R----L-DGKLENKKAL----LEEVGLPFDEETPLVGVIINFDDFQGAEL-LAESLEKLV 333 (489)
T ss_pred -h----h-hhHHHHHHHH----HHHhCCCCccCCCEEEEeccccccCcHHH-HHHHHHHHH
Confidence 1 3 3567777655 45679888999999999999999999988 888777654
No 14
>PLN02939 transferase, transferring glycosyl groups
Probab=98.74 E-value=6e-07 Score=105.74 Aligned_cols=348 Identities=16% Similarity=0.216 Sum_probs=204.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEechhccccchHHHhhcCCcHHHHHHHHHHcCCChHHHHh
Q 007597 50 KFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAE 129 (596)
Q Consensus 50 ~as~~~~Y~Ala~~vrd~l~~~W~~T~~~~~~~~~k~vyY~SmEfl~gr~l~nnl~nLg~~~~~~~~l~~lg~~l~~l~~ 129 (596)
+....+.|..+...=-..+.......... ....+-+|-++|.|..
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~mkILfVasE~a---------------------------------- 492 (977)
T PLN02939 448 DGRIREAYLSCKGKNEREAVENFLKLTLS-GTSSGLHIVHIAAEMA---------------------------------- 492 (977)
T ss_pred hhhHHHHHHHHhcCchHHHHHHHHHhccC-CCCCCCEEEEEEcccc----------------------------------
Confidence 34556667766665555555555544432 2245678999999982
Q ss_pred hhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCcccccCCeEEEEEECC
Q 007597 130 QEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209 (596)
Q Consensus 130 ~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~g 209 (596)
|-.=.||||--++..=++++.+|.-+..+--.|. ++..+.+.+ .+ ..+..+.+.|+|
T Consensus 493 ----P~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~-~i~~~~~~~-~~-----------------~~~~~~~~~~~g 549 (977)
T PLN02939 493 ----PVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD-CMQYDQIRN-LK-----------------VLDVVVESYFDG 549 (977)
T ss_pred ----cccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc-ccChhhhhc-cc-----------------ccceEEEEeecC
Confidence 2234899999999999999999999999999997 343221111 00 001111222322
Q ss_pred eEEECCCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcchhhhHHhhhhhhccceeeecCC
Q 007597 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPG 289 (596)
Q Consensus 210 ~v~~~~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~ 289 (596)
... +..+| ...+.| +++.+.+..-+. ..|+++ .+|+.
T Consensus 550 ~~~----~~~v~-----------~~~~~G------V~vyfId~~~~~-----~fF~R~-----------------~iYg~ 586 (977)
T PLN02939 550 NLF----KNKIW-----------TGTVEG------LPVYFIEPQHPS-----KFFWRA-----------------QYYGE 586 (977)
T ss_pred cee----EEEEE-----------EEEECC------eeEEEEecCCch-----hccCCC-----------------CCCCC
Confidence 110 00001 111112 334444321010 012211 34532
Q ss_pred -CCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccC-CCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHH
Q 007597 290 -DSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEF-PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWD 367 (596)
Q Consensus 290 -D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l-~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~ 367 (596)
|+ -.|+ .||+-|++. +++ .+ ..+.+||+||-|.|++.|-+++.... .|+
T Consensus 587 ~Dn-----~~RF---~~FsrAaLe-~~~------------~~~~~PDIIH~HDW~TaLV~pll~~~y~~-~~~------- 637 (977)
T PLN02939 587 HDD-----FKRF---SYFSRAALE-LLY------------QSGKKPDIIHCHDWQTAFVAPLYWDLYAP-KGF------- 637 (977)
T ss_pred ccH-----HHHH---HHHHHHHHH-HHH------------hcCCCCCEEEECCccHHHHHHHHHHHHhh-ccC-------
Confidence 33 2466 689998884 221 12 25779999999999988777654332 222
Q ss_pred HhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhccccccc-CCCCCCeeeeehh
Q 007597 368 ITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILD-NNPKKPVVRMANL 446 (596)
Q Consensus 368 iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~-~~~~~~~~~Ma~L 446 (596)
..-.++||.|...=-| .||.+.+.. + |.+++.+.+....+ +..+ .+|+-..
T Consensus 638 -~~~ktVfTIHNl~yQG--~f~~~~l~~-l----------------------GL~~~~l~~~d~le~~~~~--~iN~LK~ 689 (977)
T PLN02939 638 -NSARICFTCHNFEYQG--TAPASDLAS-C----------------------GLDVHQLDRPDRMQDNAHG--RINVVKG 689 (977)
T ss_pred -CCCcEEEEeCCCcCCC--cCCHHHHHH-c----------------------CCCHHHccChhhhhhccCC--chHHHHH
Confidence 1235999999997666 556555532 1 22222221111111 1002 7888888
Q ss_pred hhhcCCchHhHHHHhHHHHHHhhhc----chhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHH
Q 007597 447 CVVSAHTVNGVAQLHSDILKADLFA----DYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLV 522 (596)
Q Consensus 447 Al~~S~~vNGVS~lH~ev~k~~~f~----~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~ 522 (596)
+++.|..|+.||.-+.+-+.+. +- ......+.++.-|-|||....| ||.- +.+|..
T Consensus 690 GIv~AD~VtTVSptYA~EI~te-~G~GL~~~L~~~~~Kl~gIlNGID~e~w----nPat----D~~L~~----------- 749 (977)
T PLN02939 690 AIVYSNIVTTVSPTYAQEVRSE-GGRGLQDTLKFHSKKFVGILNGIDTDTW----NPST----DRFLKV----------- 749 (977)
T ss_pred HHHhCCeeEeeeHHHHHHHHHH-hccchHHHhccccCCceEEecceehhhc----CCcc----cccccc-----------
Confidence 9999999999999888755542 21 1123457899999999999999 4643 112211
Q ss_pred hhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccceeccccccccccchhhHHHHH
Q 007597 523 GLRQF-ADNTELQAEWESAKMASKKHLADYIWRVTGVTID-PNSLFDIQVKRIHEYKRQLLNILGAIYRY 590 (596)
Q Consensus 523 ~l~~~-~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ld-p~~lfd~~arR~heYKRq~Lnil~~i~ry 590 (596)
.| ++| | +-|..+|..| +++.|..-+ |+..+.+++-|+++.|...+ ++..+.+.
T Consensus 750 ---~Ys~~d------l-~GK~~nK~aL----RkelGL~~~d~d~pLIg~VGRL~~QKGiDl-LleA~~~L 804 (977)
T PLN02939 750 ---QYNAND------L-QGKAANKAAL----RKQLGLSSADASQPLVGCITRLVPQKGVHL-IRHAIYKT 804 (977)
T ss_pred ---ccChhh------h-hhhhhhhHHH----HHHhCCCcccccceEEEEeecCCcccChHH-HHHHHHHH
Confidence 11 111 4 3567777654 567787653 78889999999999999998 88777654
No 15
>PRK14099 glycogen synthase; Provisional
Probab=98.23 E-value=3.5e-06 Score=93.91 Aligned_cols=206 Identities=18% Similarity=0.144 Sum_probs=127.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeee
Q 007597 298 LRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTN 377 (596)
Q Consensus 298 lRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTn 377 (596)
.|+ .||+-|.+. +.+.. ... -++.+||.||.|++++..-+ +.. + ...-.++||.
T Consensus 112 ~rf---~~f~~a~~~-~~~~~--------~~~-~~pDIiH~Hdw~~~l~~~~l-~~~----~--------~~~~~~V~Ti 165 (485)
T PRK14099 112 QRF---AALARAAAA-IGQGL--------VPG-FVPDIVHAHDWQAGLAPAYL-HYS----G--------RPAPGTVFTI 165 (485)
T ss_pred HHH---HHHHHHHHH-HHhhh--------ccC-CCCCEEEECCcHHHHHHHHH-HhC----C--------CCCCCEEEeC
Confidence 466 799998874 22211 001 25789999999999876433 310 0 0123489999
Q ss_pred ccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCCchHhH
Q 007597 378 HTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGV 457 (596)
Q Consensus 378 HTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~~vNGV 457 (596)
|+..-.+ .||..++..+ +.+++.+...++... + .+++...+++.|..|+.|
T Consensus 166 Hn~~~qg--~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--~--~~~~~k~~i~~ad~vitV 216 (485)
T PRK14099 166 HNLAFQG--QFPRELLGAL-----------------------GLPPSAFSLDGVEYY--G--GIGYLKAGLQLADRITTV 216 (485)
T ss_pred CCCCCCC--cCCHHHHHHc-----------------------CCChHHcCchhhhhC--C--CccHHHHHHHhcCeeeec
Confidence 9996444 4776665542 111111110010000 2 567788899999999999
Q ss_pred HHHhHHHHHHhhh----cchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCCHHH
Q 007597 458 AQLHSDILKADLF----ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTEL 533 (596)
Q Consensus 458 S~lH~ev~k~~~f----~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d~~~ 533 (596)
|.-..+-+++..+ .......++++.-|.|||....| ||.-...+... -+.+
T Consensus 217 S~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f----~p~~~~~~~~~--------------------~~~~- 271 (485)
T PRK14099 217 SPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVW----NPATDELIAAT--------------------YDVE- 271 (485)
T ss_pred ChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhc----cccccchhhhc--------------------CChh-
Confidence 9888775553211 00112346789999999999999 45422111100 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHH
Q 007597 534 QAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 591 (596)
Q Consensus 534 ~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~ 591 (596)
.+ +.|..+|..| +++.|...+|+.++.+++-|+.+.|...+ ++..+.+..
T Consensus 272 --~~-~~k~~~k~~l----~~~~gl~~~~~~~li~~VgRL~~~KG~d~-Li~A~~~l~ 321 (485)
T PRK14099 272 --TL-AARAANKAAL----QARFGLDPDPDALLLGVISRLSWQKGLDL-LLEALPTLL 321 (485)
T ss_pred --HH-HhHHHhHHHH----HHHcCCCcccCCcEEEEEecCCccccHHH-HHHHHHHHH
Confidence 13 4566666654 56789888889999999999999999988 777776553
No 16
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=98.06 E-value=7.4e-06 Score=83.47 Aligned_cols=213 Identities=13% Similarity=0.162 Sum_probs=113.0
Q ss_pred CCCCCchhchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeee-eecccccccCCCcccccCCeEEEEEECCeEEEC
Q 007597 136 LGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQE-EVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVN 214 (596)
Q Consensus 136 LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~GyF~Q~I~dG~Qv-E~pd~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~ 214 (596)
.-.||||..+++.-++++.+|..+..+--+|.. + +....+...+ +.+. ..+ . .++|.. .
T Consensus 13 ~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~-~-~~~~~~~~~~~~~~~------~~~-----~-~v~~~~-~----- 72 (245)
T PF08323_consen 13 AKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGF-I-DEEYFQLEPVRRLSV------PFG-----G-PVPVGV-W----- 72 (245)
T ss_dssp B-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THH-H-HHHCTTEEEEEEES-------STT-----C-EEEEE--------
T ss_pred cccCcHhHHHHHHHHHHHhcCCeEEEEEccchh-h-hhhhhcceEEEEecc------ccc-----c-cccccc-c-----
Confidence 569999999999999999999999999998832 2 2211011100 0100 000 0 111110 0
Q ss_pred CCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEEEecccCCccccccccCcchhhhHHhhhhhhccceeeecCCC-Cch
Q 007597 215 PNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGD-STE 293 (596)
Q Consensus 215 ~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrLW~a~v~~~~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~D-~~~ 293 (596)
..+++|+.... .++.+.++...|.+ |. .+|++. ..+
T Consensus 73 ------------------------------~~~~v~~~~~~--~v~v~~i~~~~~f~--------r~---~iY~~~~~~~ 109 (245)
T PF08323_consen 73 ------------------------------YEVRVYRYPVD--GVPVYFIDNPEYFD--------RP---GIYGDNGGDY 109 (245)
T ss_dssp --------------------------------EEEEEEEET--TEEEEEEESHHHHG--------SS---SSSBSTSSBH
T ss_pred ------------------------------eEEEEEEEEcC--CccEEEecChhhcc--------cc---ceeccCCCcc
Confidence 22445554432 23344444333322 11 288651 111
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCC-CCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhc
Q 007597 294 EGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP-SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRT 372 (596)
Q Consensus 294 ~GkelRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~-~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~ 372 (596)
.....|. .||+.|++. .+..++ .+.+||+||-|.|++.+.+ |.. ...+..+ ....
T Consensus 110 ~d~~~rf---~~fs~a~le-------------~~~~l~~~pDIIH~hDW~tal~p~~l-k~~-----~~~~~~~--~~~~ 165 (245)
T PF08323_consen 110 PDNAERF---AFFSRAALE-------------LLKKLGWKPDIIHCHDWHTALAPLYL-KER-----YQQDPFF--ANIP 165 (245)
T ss_dssp TTHHHHH---HHHHHHHHH-------------HHCTCT-S-SEEEEECGGGTTHHHHH-HHC-----CSS--------SE
T ss_pred hhHHHHH---HHHHHHHHH-------------HHHhhCCCCCEEEecCchHHHHHHHh-ccc-----ccccccc--ccce
Confidence 1124565 588888884 344554 6889999999999998776 332 1111111 2567
Q ss_pred eeeeeccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCC
Q 007597 373 VAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAH 452 (596)
Q Consensus 373 ~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~ 452 (596)
++||.|.+.-.|. ||.+.+ . .++.+++.+..+.-.+. ...+||-..||..|.
T Consensus 166 ~v~TIHN~~yqg~--~~~~~~-~----------------------~~gl~~~~~~~~~~~~~---~~~in~lk~gi~~AD 217 (245)
T PF08323_consen 166 TVFTIHNLEYQGI--FPPEDL-K----------------------ALGLPDEYFQNLDEYEF---YGQINFLKAGIVYAD 217 (245)
T ss_dssp EEEEESSTT---E--EEGGGG-G----------------------CTT-GGGGS-STTTTEE---TTEEEHHHHHHHHSS
T ss_pred eEEEEcccccCCc--CCHHHH-H----------------------HcCCCHHHhcccccccc---ccccCHHHHHHHhcC
Confidence 9999999766663 443332 1 12333333323332322 128999999999999
Q ss_pred chHhHHHHhHH
Q 007597 453 TVNGVAQLHSD 463 (596)
Q Consensus 453 ~vNGVS~lH~e 463 (596)
.||.||.-..+
T Consensus 218 ~v~TVS~~Ya~ 228 (245)
T PF08323_consen 218 KVTTVSPTYAR 228 (245)
T ss_dssp EEEESSHHHHH
T ss_pred EeeeCCHHHHH
Confidence 99999887754
No 17
>PLN02316 synthase/transferase
Probab=97.53 E-value=0.0011 Score=79.84 Aligned_cols=173 Identities=20% Similarity=0.237 Sum_probs=103.4
Q ss_pred hhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeecccccc
Q 007597 304 FFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383 (596)
Q Consensus 304 yfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpe 383 (596)
.||+-|.++- +++ .| ..+.+||.||-|++++..-+ +......++ .+-.++||.|.+.
T Consensus 693 ~~F~~Aale~-l~~----~~-------~~PDIIHaHDW~talva~ll-k~~~~~~~~--------~~~p~V~TiHnl~-- 749 (1036)
T PLN02316 693 GFFCHAALEF-LLQ----SG-------FHPDIIHCHDWSSAPVAWLF-KDHYAHYGL--------SKARVVFTIHNLE-- 749 (1036)
T ss_pred HHHHHHHHHH-HHh----cC-------CCCCEEEECCChHHHHHHHH-HHhhhhhcc--------CCCCEEEEeCCcc--
Confidence 7899988852 211 00 15779999999999987654 332111122 2346999999753
Q ss_pred ccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCCchHhHHHHhHH
Q 007597 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSD 463 (596)
Q Consensus 384 glE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~e 463 (596)
+... ++ ..++..|..|..||.-..+
T Consensus 750 ----~~~n-------------------~l--------------------------------k~~l~~AD~ViTVS~tya~ 774 (1036)
T PLN02316 750 ----FGAN-------------------HI--------------------------------GKAMAYADKATTVSPTYSR 774 (1036)
T ss_pred ----cchh-------------------HH--------------------------------HHHHHHCCEEEeCCHHHHH
Confidence 1100 00 0145677788888776554
Q ss_pred HHHHh-hhcchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCCHHHHHHHHHHHH
Q 007597 464 ILKAD-LFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKM 542 (596)
Q Consensus 464 v~k~~-~f~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~ 542 (596)
-+... .+ ...++|+.-|-|||...+|- |.-... +.. .|. ++| +.+-|.
T Consensus 775 EI~~~~~l----~~~~~Kl~vI~NGID~~~w~----P~tD~~----lp~-~y~------------~~~------~~~gK~ 823 (1036)
T PLN02316 775 EVSGNSAI----APHLYKFHGILNGIDPDIWD----PYNDNF----IPV-PYT------------SEN------VVEGKR 823 (1036)
T ss_pred HHHhccCc----ccccCCEEEEECCccccccC----Cccccc----ccc-cCC------------chh------hhhhhh
Confidence 33321 11 11247899999999999994 542111 110 000 111 112355
Q ss_pred HHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHH
Q 007597 543 ASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYK 591 (596)
Q Consensus 543 ~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~ 591 (596)
.+|..| +++.|+. +++....+++-|+++.|-..+ ++..+.+..
T Consensus 824 ~~k~~L----r~~lGL~-~~d~plVg~VGRL~~qKGvdl-Li~Al~~ll 866 (1036)
T PLN02316 824 AAKEAL----QQRLGLK-QADLPLVGIITRLTHQKGIHL-IKHAIWRTL 866 (1036)
T ss_pred hhHHHH----HHHhCCC-cccCeEEEEEeccccccCHHH-HHHHHHHHh
Confidence 555554 5567876 457889999999999999988 888777654
No 18
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.017 Score=64.84 Aligned_cols=210 Identities=20% Similarity=0.129 Sum_probs=130.6
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeee
Q 007597 297 LLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYT 376 (596)
Q Consensus 297 elRLkQeyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fT 376 (596)
.+|+ -+|+-|+++. .-. + ... ..+.++|.||=|.+|+...+ +..- . ....-.++||
T Consensus 108 ~~Rf---~~F~~a~~~~-~~~----~----~~~-~~pDIvH~hDWqt~L~~~~l-k~~~--~--------~~~~i~tVfT 163 (487)
T COG0297 108 AERF---AFFSLAAAEL-APL----G----LIS-WLPDIVHAHDWQTGLLPAYL-KQRY--R--------SGYIIPTVFT 163 (487)
T ss_pred HHHH---HHHHHHHHHH-hhh----c----CCC-CCCCEEEeecHHHHHHHHHH-hhcc--c--------ccccCCeEEE
Confidence 3677 6777777741 101 0 111 36789999999999998765 2210 0 0124568999
Q ss_pred eccccccccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhcCCchHh
Q 007597 377 NHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNG 456 (596)
Q Consensus 377 nHTpvpeglE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~S~~vNG 456 (596)
-|+..=.|.=. ...+-.-=||. +... +-..+ ....+++...+|..|..|+.
T Consensus 164 IHNl~~qG~~~-~~~~~~lgLp~------------------------~~~~-~~~l~---~~~~~~~lK~gi~~ad~vtt 214 (487)
T COG0297 164 IHNLAYQGLFR-LQYLEELGLPF------------------------EAYA-SFGLE---FYGQISFLKGGLYYADAVTT 214 (487)
T ss_pred Eeeceeecccc-hhhHHHhcCCH------------------------HHhh-hceee---ecCcchhhhhhheeccEEEE
Confidence 99998877655 11111111332 1111 00011 01168888899999999999
Q ss_pred HHHHhHHHHHHhhh----cchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCCHH
Q 007597 457 VAQLHSDILKADLF----ADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTE 532 (596)
Q Consensus 457 VS~lH~ev~k~~~f----~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d~~ 532 (596)
||.=+.+=+....| .++-.....+++.|-|||.---| ||+-...+. . .+ +.+
T Consensus 215 VSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~w----np~~d~~~~---------------~---~y--~~~ 270 (487)
T COG0297 215 VSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLW----NPETDPYIA---------------A---NY--SAE 270 (487)
T ss_pred ECHHHHHhhccccccccchhhhhhccccEEEEEeeEEeccc----Ccccccchh---------------c---cC--Ccc
Confidence 99888763332212 12223345678899999999999 464322221 0 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccceeccccccccccchhhHHHHHHH
Q 007597 533 LQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKK 592 (596)
Q Consensus 533 ~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arR~heYKRq~Lnil~~i~ry~~ 592 (596)
. |. .|.+||..|-. +.|...+.+....+++-|+.++|=-+| ++..|+....
T Consensus 271 ~---~~-~k~~nk~~L~~----~~gL~~~~~~pl~~~vsRl~~QKG~dl-~~~~i~~~l~ 321 (487)
T COG0297 271 V---LP-AKAENKVALQE----RLGLDVDLPGPLFGFVSRLTAQKGLDL-LLEAIDELLE 321 (487)
T ss_pred c---hh-hhHHHHHHHHH----HhCCCCCCCCcEEEEeeccccccchhH-HHHHHHHHHH
Confidence 1 42 37778877654 458888999999999999999999999 8888876543
No 19
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=96.24 E-value=0.0025 Score=58.60 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhhcccCCCcEEEEEechhccccch
Q 007597 54 EQAFFATAESVRDRLIQ--QWNETYHHFNKVDPKQTYYLSMEFLQGRTL 100 (596)
Q Consensus 54 ~~~Y~Ala~~vrd~l~~--~W~~T~~~~~~~~~k~vyY~SmEfl~gr~l 100 (596)
...|.++....++++.. .|..+ ......+.|+||||||+++.+|
T Consensus 73 l~~~~~v~~~f~~Ym~~~~~W~~~---~~~~~~~~IAYFSmEfGlhesL 118 (118)
T PF11897_consen 73 LARYDRVYARFEEYMSQKPTWFQE---PGDTPNPPIAYFSMEFGLHESL 118 (118)
T ss_pred HHHHHHHHHHHHHHHcCCCccccC---CCCCCCCCEEEEcccccccccC
Confidence 34455555556666643 35544 2334578999999999998875
No 20
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=84.71 E-value=3 Score=48.19 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=73.5
Q ss_pred eeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcch
Q 007597 441 VRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDL 520 (596)
Q Consensus 441 ~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~ 520 (596)
..|=..|...|+.+-.||..-..=++ .++..-|++ =+-|||.+..|-.
T Consensus 217 ~~iE~~aa~~Ad~fttVS~it~~E~~-----~Ll~~~pd~--ViPNGid~~~f~~------------------------- 264 (590)
T cd03793 217 YCIERAAAHCAHVFTTVSEITAYEAE-----HLLKRKPDV--VLPNGLNVKKFSA------------------------- 264 (590)
T ss_pred HHHHHHHHhhCCEEEECChHHHHHHH-----HHhCCCCCE--EeCCCcchhhccc-------------------------
Confidence 33444677889999999554444333 355666777 4459999988842
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CcCCCCCccccc-eecccc-ccccccchhhHHHHHHHh
Q 007597 521 LVGLRQFADNTELQAEWESAKMASKKHLADYIWRVT-G-VTIDPNSLFDIQ-VKRIHE-YKRQLLNILGAIYRYKKL 593 (596)
Q Consensus 521 l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~-g-~~ldp~~lfd~~-arR~he-YKRq~Lnil~~i~ry~~i 593 (596)
..+ |...|...|+++.++++... | ..+||+..+..| +=|+.- -|=..+ ++.-+.|+++.
T Consensus 265 ---------~~e----~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f~~GR~e~~nKGiDv-lIeAl~rLn~~ 327 (590)
T cd03793 265 ---------LHE----FQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFFTAGRYEFSNKGADM-FLEALARLNYL 327 (590)
T ss_pred ---------chh----hhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEEEeeccccccCCHHH-HHHHHHHHHHH
Confidence 122 44678999999999975432 3 357888777777 799975 677777 77777777764
No 21
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=44.99 E-value=59 Score=38.06 Aligned_cols=186 Identities=14% Similarity=0.165 Sum_probs=96.4
Q ss_pred hhhhhhhhHHHHHHHHHHhccCcccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccc
Q 007597 303 QFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLP 382 (596)
Q Consensus 303 eyfl~~a~lqdiir~~~~~~g~~~l~~l~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvp 382 (596)
-..||-+.. ..|..|.+... ...+++.|.||-=.+++++-+=+.. ..=.++||||.-++
T Consensus 121 a~~Fgyava-~fi~~f~~~~~------~~~~ViaHfHEWmaG~gll~lr~~~--------------~~VaTvFTTHAT~l 179 (633)
T PF05693_consen 121 AVMFGYAVA-WFIEEFYKFYE------EKPKVIAHFHEWMAGVGLLYLRKRK--------------PDVATVFTTHATLL 179 (633)
T ss_dssp HHHHHHHHH-HHHHHHHHH-S-------SEEEEEEEESGGGTTHHHHHHHTT---------------SCEEEEEESS-HH
T ss_pred HHHHHHHHH-HHHHHHHHhhc------CCCcEEEEechHhHhHHHHHHhccC--------------CCeeEEEEecccch
Confidence 355666553 36666654431 1567889999999888887652222 24569999997543
Q ss_pred -----c-------ccccccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeeeehhhhhc
Q 007597 383 -----E-------ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVS 450 (596)
Q Consensus 383 -----e-------glE~wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~Ma~LAl~~ 450 (596)
+ -+++|+.+.+..- .+|- . +.+|=..|...
T Consensus 180 GR~l~~~~~~~Y~~L~~~~~d~eA~~--------------------------------~~i~-~-----k~~iEraaA~~ 221 (633)
T PF05693_consen 180 GRYLAANNKDFYNNLDKFNGDQEAGE--------------------------------RNIY-H-----KHSIERAAAHY 221 (633)
T ss_dssp HHHHTTTSS-TTTSGTTS-HHHHHHH--------------------------------TT-H-H-----HHHHHHHHHHH
T ss_pred hhHhhcCCCcHHHHhhccCccccccC--------------------------------ccch-H-----HHHHHHHHHHh
Confidence 1 1233333322211 1111 0 34555556667
Q ss_pred CCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCC
Q 007597 451 AHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADN 530 (596)
Q Consensus 451 S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d 530 (596)
++-.=.||.+=..=.+. +-.--|+-+. -||+.....- ..
T Consensus 222 AdvFTTVSeITa~Ea~~-----LL~r~pDvV~--pNGl~v~~~~----------------------------------~~ 260 (633)
T PF05693_consen 222 ADVFTTVSEITAKEAEH-----LLKRKPDVVT--PNGLNVDKFP----------------------------------AL 260 (633)
T ss_dssp SSEEEESSHHHHHHHHH-----HHSS--SEE------B-GGGTS----------------------------------ST
T ss_pred cCeeeehhhhHHHHHHH-----HhCCCCCEEc--CCCccccccc----------------------------------cc
Confidence 77777775443332221 1111233332 3787765442 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-C-CcCCCC-Cccccceeccc-cccccccchhhHHHHHHHh
Q 007597 531 TELQAEWESAKMASKKHLADYIWRVT-G-VTIDPN-SLFDIQVKRIH-EYKRQLLNILGAIYRYKKL 593 (596)
Q Consensus 531 ~~~~~~~~~~k~~~K~~L~~~i~~~~-g-~~ldp~-~lfd~~arR~h-eYKRq~Lnil~~i~ry~~i 593 (596)
.+ |...|...|+++.++++... | ..+||| +|+..-+-|.- .-|=-++ .+--+.|+++.
T Consensus 261 ~e----fqnl~~~~k~ki~~fv~~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~-fieAL~rLn~~ 322 (633)
T PF05693_consen 261 HE----FQNLHAKAKEKIHEFVRGHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDV-FIEALARLNHR 322 (633)
T ss_dssp TH----HHHHHHHHHHHHHHHHHHHSTT---S-GGGEEEEEEESSS-TTTTTHHH-HHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEeeeceeeecCCccH-HHHHHHHHHHH
Confidence 44 55789999999999999875 4 477876 45555556652 2344455 55666666553
No 22
>PF14474 RTC4: RTC4-like domain
Probab=34.77 E-value=29 Score=32.19 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=25.2
Q ss_pred hhhHHHHH-HHHHHhcCCCHHHHHHHhhhceee
Q 007597 344 TLAIPELM-RLLMDEEGLGWDEAWDITTRTVAY 375 (596)
Q Consensus 344 alai~Elm-R~l~de~gl~~~~A~~iv~~~~~f 375 (596)
.+++||++ |.-+++-+++.++|.+|.+.+.-|
T Consensus 85 ~VLvPEl~~~LI~EDm~v~~~~A~~il~eS~~~ 117 (124)
T PF14474_consen 85 YVLVPELAVRLIMEDMGVDDEEARQILEESSEY 117 (124)
T ss_pred HHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46789985 455667799999999999887654
No 23
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=33.39 E-value=1e+02 Score=27.55 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCeEEEeCCCc---hhhhHHHHHHHHHHhcCCCHHHHHHHhhhc
Q 007597 332 SKVAVQLNDTH---PTLAIPELMRLLMDEEGLGWDEAWDITTRT 372 (596)
Q Consensus 332 ~~~~ihlNdtH---palai~ElmR~l~de~gl~~~~A~~iv~~~ 372 (596)
.++.||..-|. |++++.-||+ ..|++.++|++.+++.
T Consensus 74 ~~VlVHC~~G~~RS~~v~~ayLm~----~~~~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 74 GKVLVHCKAGLSRSGAVAAAYLMK----KNGMSLEEAIEYVRSR 113 (133)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHH----HHTSSHHHHHHHHHHH
T ss_pred ceeEEEeCCCcccchHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 56899999999 7888877764 5799999999999773
No 24
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=31.71 E-value=73 Score=28.60 Aligned_cols=38 Identities=32% Similarity=0.361 Sum_probs=29.9
Q ss_pred CCCeEEEeCCCc---hhhhHHHHHHHHHHhcCCCHHHHHHHhhhc
Q 007597 331 PSKVAVQLNDTH---PTLAIPELMRLLMDEEGLGWDEAWDITTRT 372 (596)
Q Consensus 331 ~~~~~ihlNdtH---palai~ElmR~l~de~gl~~~~A~~iv~~~ 372 (596)
+.++.||.+.|+ +++++.-+|+ ..++++++|++.+++.
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~----~~~~~~~~a~~~vr~~ 121 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMK----TLGLSLREAYEFVKSR 121 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 478899999998 4566655554 4599999999998873
No 25
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=30.04 E-value=78 Score=28.69 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCCeEEEeCCCc---hhhhHHHHHHHHHHhcCCCHHHHHHHhhhce
Q 007597 331 PSKVAVQLNDTH---PTLAIPELMRLLMDEEGLGWDEAWDITTRTV 373 (596)
Q Consensus 331 ~~~~~ihlNdtH---palai~ElmR~l~de~gl~~~~A~~iv~~~~ 373 (596)
+.++.+|...|. +++++.-||+ ..|+++++|++.+++.-
T Consensus 78 ~~~VlVHC~~G~~RS~~v~~~yl~~----~~~~~~~~A~~~v~~~R 119 (138)
T smart00195 78 GGKVLVHCQAGVSRSATLIIAYLMK----YRNLSLNDAYDFVKDRR 119 (138)
T ss_pred CCeEEEECCCCCchHHHHHHHHHHH----HhCCCHHHHHHHHHHHC
Confidence 478999999996 4555555554 57999999999988644
No 26
>PF14407 Frankia_peptide: Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
Probab=29.30 E-value=15 Score=30.18 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=31.1
Q ss_pred chhccccchHHHhhcCCcHHHHHHHHHHcCCChHHHHhhhc
Q 007597 92 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEK 132 (596)
Q Consensus 92 mEfl~gr~l~nnl~nLg~~~~~~~~l~~lg~~l~~l~~~E~ 132 (596)
||.+|||.+...=--.-+...-.++.++.+++.++|...|.
T Consensus 2 ~e~lIgrAv~D~~FRqqllad~~~A~~~Y~Lt~eeL~al~~ 42 (61)
T PF14407_consen 2 VERLIGRAVTDEAFRQQLLADPEEACKEYDLTPEELQALER 42 (61)
T ss_pred HHHHHHHHHcCHHHHHHHhcCHHHHHhhCCCCHHHHHHHHH
Confidence 78899998865544444444556688999999999999985
No 27
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=27.64 E-value=1.1e+02 Score=31.96 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=24.8
Q ss_pred hhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCCcccccccCccccc
Q 007597 447 CVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWL 494 (596)
Q Consensus 447 Al~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~~niTNGV~~rrWl 494 (596)
++..+..+..||+--.+-+++. +..+-+.++.-|-|||+...|-
T Consensus 141 ~~~~ad~vi~~S~~~~~~~~~~----~~~~~~~~i~vi~ng~~~~~~~ 184 (388)
T TIGR02149 141 AIEAADRVIAVSGGMREDILKY----YPDLDPEKVHVIYNGIDTKEYK 184 (388)
T ss_pred HHhhCCEEEEccHHHHHHHHHH----cCCCCcceEEEecCCCChhhcC
Confidence 3444556666654433333322 1122346788889999998885
No 28
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=26.68 E-value=81 Score=36.02 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=43.6
Q ss_pred CCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHH
Q 007597 332 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEI 407 (596)
Q Consensus 332 ~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~i 407 (596)
+-.+|=++|-|= +++|.++|.++. ...+.|+-|+|.|- .++|+ .||.+-+|+..+
T Consensus 147 ~gDiIWVhDYhL-~L~P~mlR~~~~-------------~~~IgfFlHiPfPs------sEvfr-~lP~r~eIl~gl 201 (486)
T COG0380 147 PGDIIWVHDYHL-LLVPQMLRERIP-------------DAKIGFFLHIPFPS------SEVFR-CLPWREEILEGL 201 (486)
T ss_pred CCCEEEEEechh-hhhHHHHHHhCC-------------CceEEEEEeCCCCC------HHHHh-hCchHHHHHHHh
Confidence 446778999884 677999998875 55899999999884 36665 589999998776
No 29
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=23.70 E-value=1.4e+02 Score=33.45 Aligned_cols=56 Identities=20% Similarity=0.397 Sum_probs=37.6
Q ss_pred CCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHHHHHH
Q 007597 331 PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEI 407 (596)
Q Consensus 331 ~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~ii~~i 407 (596)
.+..+|+++|-|..+ +|.++|... .+..++|+-|||.|.. ++ -+.+|..-+|+..+
T Consensus 130 ~~~d~iwihDyhl~l-lp~~lr~~~-------------~~~~i~~f~HipfP~~------e~-~~~lp~~~~ll~~~ 185 (460)
T cd03788 130 RPGDLVWVHDYHLLL-LPQMLRERG-------------PDARIGFFLHIPFPSS------EI-FRCLPWREELLRGL 185 (460)
T ss_pred CCCCEEEEeChhhhH-HHHHHHhhC-------------CCCeEEEEEeCCCCCh------HH-HhhCCChHHHHHHH
Confidence 356799999999654 457777543 1568999999998654 22 33456655555554
No 30
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=22.67 E-value=75 Score=23.98 Aligned_cols=29 Identities=3% Similarity=0.182 Sum_probs=22.9
Q ss_pred ccHHHHHHhchhHHHHHHHHHHHHHHHHHhhCCCCh
Q 007597 388 WSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLE 423 (596)
Q Consensus 388 wp~~l~~~~lpr~~~ii~~in~~~~~~~~~~~~~~~ 423 (596)
=|++++.++||.| .+..++.+.+.+++|.
T Consensus 3 ~pidiL~rvFP~~-------kr~~Le~iL~~C~GDv 31 (39)
T PF03474_consen 3 SPIDILTRVFPHQ-------KRSVLELILQRCNGDV 31 (39)
T ss_pred CHHHHHHHHCCCC-------ChHHHHHHHHHcCCcH
Confidence 3789999999987 5567778888887753
No 31
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=21.87 E-value=1.3e+02 Score=32.91 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeecccc
Q 007597 332 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVL 381 (596)
Q Consensus 332 ~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpv 381 (596)
++.+||.+..+++++..-+-|. ....+++|.|+..
T Consensus 114 ~~DvIH~h~~~~~~~~~~~~~~---------------~~~p~V~t~H~~~ 148 (439)
T TIGR02472 114 LPDLIHAHYADAGYVGARLSRL---------------LGVPLIFTGHSLG 148 (439)
T ss_pred CCCEEEEcchhHHHHHHHHHHH---------------hCCCEEEeccccc
Confidence 5789999988887776544332 2345899999753
No 32
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.30 E-value=76 Score=27.11 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCChHHHHhhh
Q 007597 112 AYADALNNLGHVLEEIAEQE 131 (596)
Q Consensus 112 ~~~~~l~~lg~~l~~l~~~E 131 (596)
.++||..|||+||+.+++.-
T Consensus 59 LikeAv~ELgLDFsKve~Ak 78 (82)
T PF11212_consen 59 LIKEAVEELGLDFSKVEAAK 78 (82)
T ss_pred HHHHHHHHhCCcHHHHHHHH
Confidence 47999999999999998753
No 33
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.10 E-value=91 Score=30.66 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCHH----HHHHHhhhceeeeeccccccccc
Q 007597 350 LMRLLMDEEGLGWD----EAWDITTRTVAYTNHTVLPEALE 386 (596)
Q Consensus 350 lmR~l~de~gl~~~----~A~~iv~~~~~fTnHTpvpeglE 386 (596)
-+|-|++-.+++-+ ++++|.-..|+||||.++-|-+|
T Consensus 136 AarAl~~~~~lsA~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 136 AARALMENTELSAREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHhccCCCHHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 37778776688765 57788899999999998877654
Done!