Query 007598
Match_columns 596
No_of_seqs 211 out of 886
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7.6E-53 2.6E-57 401.3 14.2 135 6-142 11-145 (174)
2 1ut7_A No apical meristem prot 100.0 1.1E-52 3.6E-57 399.0 12.4 134 6-141 13-146 (171)
3 1cmb_A Met APO-repressor; DNA- 13.9 1.6E+02 0.0055 25.7 3.9 39 17-59 50-88 (104)
4 1jgn_B PAIP2, polyadenylate-bi 13.3 1E+02 0.0035 20.9 1.9 19 447-465 4-22 (26)
5 2oh5_A Polyhedrin, C-polyhedri 8.4 1.9E+02 0.0066 27.8 2.7 28 90-117 140-168 (248)
6 2li5_B Ubiquitin-like modifier 7.7 1.2E+02 0.0041 21.6 0.7 10 225-234 22-31 (34)
7 3nr5_A MAF1, repressor of RNA 6.9 1.1E+02 0.0039 28.9 0.4 13 42-54 119-131 (164)
8 1jb0_X Photosystem I subunit P 5.7 3.1E+02 0.011 20.0 2.0 21 566-586 8-28 (35)
9 1ldd_A APC2WHB, anaphase promo 5.6 2.9E+02 0.0098 22.9 2.1 27 11-38 37-64 (74)
10 2w91_A Endo-beta-N-acetylgluco 5.3 2.8E+02 0.0097 31.3 2.5 23 342-364 224-246 (653)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.6e-53 Score=401.29 Aligned_cols=135 Identities=53% Similarity=1.017 Sum_probs=123.0
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCCCCeeeccCCCCCCCCCCCcCCcCCCCcceEeeeccccccCCCCCcc
Q 007598 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTN 85 (596)
Q Consensus 6 a~~~LPPGFRF~PTDEELV~~YLkrKI~G~plp~~~I~EvDVY~~ePWdLP~~s~~k~~d~eWYFFSpr~rKy~nG~R~n 85 (596)
+...|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+.. ++.+||||+++++||++|.|.+
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence 56899999999999999999999999999999999999999999999999998753 4679999999999999999999
Q ss_pred cccccceeEecCCcceeecCCeEEEEEEEEEeeeCCCCCCCCcCeEEEEEEeCCCch
Q 007598 86 RATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDDL 142 (596)
Q Consensus 86 RatggGyWKatGkdK~I~~~G~vVG~KKtLvFy~GrapkG~RTdWVMhEYrL~~~~l 142 (596)
|+|++||||+||++++|..+|.+||+||+|+||.|++|++.||+|+||||+|.+...
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~ 145 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGR 145 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCC
Confidence 999999999999999999889999999999999999999999999999999998753
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.1e-52 Score=399.02 Aligned_cols=134 Identities=51% Similarity=0.952 Sum_probs=120.7
Q ss_pred CCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCCCCeeeccCCCCCCCCCCCcCCcCCCCcceEeeeccccccCCCCCcc
Q 007598 6 ASTSLAPGFRFHPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKSSLKTRDKEWYFFSMLDKKYGNGSRTN 85 (596)
Q Consensus 6 a~~~LPPGFRF~PTDEELV~~YLkrKI~G~plp~~~I~EvDVY~~ePWdLP~~s~~k~~d~eWYFFSpr~rKy~nG~R~n 85 (596)
+...|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.+. .++.+||||+++++||++|.|++
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence 4688999999999999999999999999999999999999999999999999864 34789999999999999999999
Q ss_pred cccccceeEecCCcceeecCCeEEEEEEEEEeeeCCCCCCCCcCeEEEEEEeCCCc
Q 007598 86 RATEKGYWKTTGKDRPVHHNTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRLTDDD 141 (596)
Q Consensus 86 RatggGyWKatGkdK~I~~~G~vVG~KKtLvFy~GrapkG~RTdWVMhEYrL~~~~ 141 (596)
|+|++||||+||++++|..++.+||+||+|+||.|++|++.||+|+||||+|....
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~ 146 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS 146 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCc
Confidence 99999999999999999998999999999999999999999999999999998775
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=13.93 E-value=1.6e+02 Score=25.70 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCCCeeeccCCCCCCCCCCCcC
Q 007598 17 HPTDEELVRYYLKRKVCHRSLRFNPICVTDIYKSEPWDLPDKS 59 (596)
Q Consensus 17 ~PTDEELV~~YLkrKI~G~plp~~~I~EvDVY~~ePWdLP~~s 59 (596)
|-|-.||++.-...-..|+|+|. +.|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 67888998877778889999998 6799999999999754
No 4
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=13.33 E-value=1e+02 Score=20.92 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.1
Q ss_pred cCCCCcccccccCCCChhH
Q 007598 447 SEQKPDIVKSESDVKYPFL 465 (596)
Q Consensus 447 s~~~~~~~~f~~~~~~~~~ 465 (596)
|.-+|++.+|.++++|--+
T Consensus 4 s~lnp~akef~pgvkygni 22 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKYGNI 22 (26)
T ss_dssp CSSCTTCCCCCTTSCTTCC
T ss_pred ccCCcchhhcCCCceecce
Confidence 4458999999999999543
No 5
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=8.40 E-value=1.9e+02 Score=27.78 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.3
Q ss_pred cceeEecC-CcceeecCCeEEEEEEEEEe
Q 007598 90 KGYWKTTG-KDRPVHHNTRTVGMKKTLVY 117 (596)
Q Consensus 90 gGyWKatG-kdK~I~~~G~vVG~KKtLvF 117 (596)
.--|.+|| +-|.|..+|++||+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 45699999 56889999999999988765
No 6
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=7.70 E-value=1.2e+02 Score=21.55 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=7.1
Q ss_pred cccccccccc
Q 007598 225 EEEWEDDEAV 234 (596)
Q Consensus 225 e~~~~~~~~~ 234 (596)
-.||+|||..
T Consensus 22 vfeweddesd 31 (34)
T 2li5_B 22 VFEWEDDESD 31 (34)
T ss_dssp GCCSSCTTSG
T ss_pred cccccccccc
Confidence 3579998753
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=6.92 E-value=1.1e+02 Score=28.92 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.0
Q ss_pred eeeccCCCCCCCC
Q 007598 42 ICVTDIYKSEPWD 54 (596)
Q Consensus 42 I~EvDVY~~ePWd 54 (596)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 6788999999983
No 8
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.66 E-value=3.1e+02 Score=19.98 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=15.4
Q ss_pred chhhhHHHHHHHHHHHHHhhe
Q 007598 566 SVVFRSLWLLLFLWIIILSVG 586 (596)
Q Consensus 566 ~~v~r~~~~~~f~~~~~l~~s 586 (596)
|-++|.+|-++++.+=+|.-+
T Consensus 8 ~y~frt~WalllLaINflVAa 28 (35)
T 1jb0_X 8 TYAFRTFWAVLLLAINFLVAA 28 (35)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 567999999877776666444
No 9
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=5.61 E-value=2.9e+02 Score=22.91 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.0
Q ss_pred CCCceeCC-ChHHHHHHHHHHhhcCCCCC
Q 007598 11 APGFRFHP-TDEELVRYYLKRKVCHRSLR 38 (596)
Q Consensus 11 PPGFRF~P-TDEELV~~YLkrKI~G~plp 38 (596)
|.|+.|.. |++||-. ||.+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899999 8888877 699999877654
No 10
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted, oxazoline, NAG-thiazoline, substrate-participation; 1.40A {Streptococcus pneumoniae} PDB: 2w92_A*
Probab=5.30 E-value=2.8e+02 Score=31.25 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.7
Q ss_pred ccccccCCCCCCCCCCcceeecc
Q 007598 342 LNEPYLDATDNPQFSDGLYLEAN 364 (596)
Q Consensus 342 ~~~~f~Da~~n~~~~Dg~fle~N 364 (596)
.|.+|+++..+.+.+||.||+.|
T Consensus 224 ~N~~ff~~~~~~~~~D~~FlNY~ 246 (653)
T 2w91_A 224 YNYQFMQPEGDKVPADNFFANFN 246 (653)
T ss_dssp TTGGGTCCBTTBCSCSEEEECSC
T ss_pred hHHHHHhccCCCcccceEEEecC
Confidence 38899999988899999999998
Done!