BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007599
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 297 LATVAVVGYTNAGKSTLVXXXXXXXXXXXXXXXATLDPRLKSVVLPSGKVLLSDTVGFIS 356
+ ++ +VGYTN+GK++L T+ P+ ++ + + K++L DTVGFI
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238
Query: 357 DLPLQLVDAFHATLEEVVEADLLVHVLDCT 386
+P Q+VDAF TL E +D L+ V+D T
Sbjct: 239 GIPPQIVDAFFVTLSEAKYSDALILVIDST 268
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 167 NLERAW-GKPVLDRVGLIIEIFNAHAHTXXXXXXXXXXXXMYK---------KSRLVRVR 216
N+ R GK VLD++ L++EIF HA + Y+ KS++ +
Sbjct: 73 NIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIKETYTKSKIGEQQ 132
Query: 217 GPDGRLTFG 225
GP G T+G
Sbjct: 133 GPLGAGTYG 141
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 297 LATVAVVGYTNAGKSTLVXXXXXXXXXXXXXXXATLDPRLKSVVLPSGKVLLSDTVGFIS 356
+ ++ +VGYTN+GK++L T+ P+ ++ + + K++L DTV FI
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIR 238
Query: 357 DLPLQLVDAFHATLEEVVEADLLVHVLDCT 386
+P Q+VDAF TL E +D L+ V+D T
Sbjct: 239 GIPPQIVDAFFVTLSEAKYSDALILVIDST 268
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 167 NLERAW-GKPVLDRVGLIIEIFNAHAHTXXXXXXXXXXXXMYK---------KSRLVRVR 216
N+ R GK VLD++ L++EIF HA + Y+ KS++ +
Sbjct: 73 NIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIKETYTKSKIGEQQ 132
Query: 217 GPDGRLTFG 225
GP G T+G
Sbjct: 133 GPLGAGTYG 141
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 297 LATVAVVGYTNAGKSTLVXXXXXXXXXXXXXXXATLDPRLKSVVLPSGKVLLSDTVGFIS 356
+ ++ +VGYTN+GK++L T+ P+ ++ + + K++L DTV FI
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIR 238
Query: 357 DLPLQLVDAFHATLEEVVEADLLVHVLDCT 386
+P Q+VDAF TL E +D L+ V+D T
Sbjct: 239 GIPPQIVDAFFVTLSEAKYSDALILVIDST 268
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 167 NLERAW-GKPVLDRVGLIIEIFNAHAHTXXXXXXXXXXXXMYK---------KSRLVRVR 216
N+ R GK VLD++ L++EIF HA + Y+ KS++ +
Sbjct: 73 NIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIKETYTKSKIGEQQ 132
Query: 217 GPDGRLTFG 225
GP G T+G
Sbjct: 133 GPLGAGTYG 141
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 295 RGLATVAVVGYTNAGKSTLVXXXXXXXXXXXXXXXATLDPRLKSVVLPSGKVL-LSDTVG 353
RGL V +VG N GKSTL+ T + ++ G + + DT G
Sbjct: 242 RGLRMV-IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG 300
Query: 354 FIS---DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRXXXXXXXXXXGVSEEK 410
S DL +L TL+E+ +AD+++ VLD ++P EE R E+
Sbjct: 301 VRSETNDLVERL--GIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-----------ER 347
Query: 411 LKN--MIEVWNKIDYHDEEMGDVEYIDGDDISN 441
+KN + V NK+D VE I+ ++I N
Sbjct: 348 IKNKRYLVVINKVDV-------VEKINEEEIKN 373
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 297 LATVAVVGYTNAGKSTLVXXXXXXXXXXXXXXXATLDPRLKSVVLPSGKVLL-SDTVGFI 355
LA V +VG+ + GKSTL+ TL P L V G+ + +D G I
Sbjct: 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLI 217
Query: 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTA 387
Q V H L + ++VHV+D +
Sbjct: 218 EG-AHQGVGLGHQFLRHIERTRVIVHVIDXSG 248
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 18/148 (12%)
Query: 49 DVVTL---FNRDPDDPPRLFLVQPR---LKPPTFLQAKLNEALCLANSLEEQRDGYFDTD 102
DV++L NRD + P R L +PR L+P T+L A+ +L +G D +
Sbjct: 169 DVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLE 228
Query: 103 F----------FDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELD 152
D EL ++ P + +G + G + C G + L
Sbjct: 229 VALDVWEGEPQADPELAARCLIATPHI-AGYSLEGKLRGTAQIYQAYCAWRGIAERVSLQ 287
Query: 153 AIFVNAILSGIQ-QRNLERAWGKPVLDR 179
+ L+G+Q + AW L R
Sbjct: 288 DVLPETWLAGLQLNPGCDPAWALATLCR 315
>pdb|1SSY|A Chain A, Crystal Structure Of Phage T4 Lysozyme Mutant
G28aI29AG30AC54TC97A
pdb|1SSY|B Chain B, Crystal Structure Of Phage T4 Lysozyme Mutant
G28aI29AG30AC54TC97A
Length = 164
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYTIAAAHLLTKSPSLNAAKSELDKAIGRNT--------NGVITKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|249L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYTAGIGHLLTKSPSLNAAKSELDKAIGRNT--------NGVATKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|248L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYTAGAGHLLTKSPSLNAAKSELDKAIGRNT--------NGVITKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|250L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYTIGAGHLLTKSPSLNAAKSELDKAIGRNT--------NGVATKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|240L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYTAGIGHLLTKSPSLNAAKSELDKAIGRNT--------NGVITKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|241L|A Chain A, The Response Of T4 Lysozyme To Large-To-Small
Substitutions Within The Core And Its Relation To The
Hydrophobic Effect
Length = 164
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYTIGAGHLLTKSPSLNAAKSELDKAIGRNT--------NGVITKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|1QT4|A Chain A, T26q Mutant Of T4 Lysozyme
Length = 164
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYQIGIGHLLTKSPSLNAAKSELDKAIGRNT--------NGVITKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|1D2W|A Chain A, N-Terminal Domain Core Methionine Mutation
Length = 164
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYTMGIGHLLTKSPSLNAAKSELDKAIGRNT--------NGVITKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|148L|E Chain E, A Covalent Enzyme-Substrate Intermediate With Saccharide
Distortion In A Mutant T4 Lysozyme
pdb|180L|A Chain A, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|180L|B Chain B, Protein Flexibility And Adaptability Seen In 25 Crystal
Forms Of T4 Lysozyme
pdb|1QTV|A Chain A, T26e Apo Structure Of T4 Lysozyme
Length = 164
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYEIGIGHLLTKSPSLNAAKSELDKAIGRNT--------NGVITKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 298 ATVAVVGYTNAGKSTLVXXXXXXXXXXXXXXXA-TLDPRLKSVVLPSGKVLLSDTVGFIS 356
ATV +VG N GKSTL T DP +V L DT G +
Sbjct: 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCG-VF 60
Query: 357 DLPLQLVD--AFHATLEEVVEADLLVHVLD 384
D P ++ TL + EADL++ V+D
Sbjct: 61 DNPQDIISQKXKEVTLNXIREADLVLFVVD 90
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 538 PDVKISARTGVGLQELLEIIDERLKTL 564
P VK SA+TG+G++EL E + ++ T+
Sbjct: 148 PIVKTSAKTGMGIEELKEYLKGKISTM 174
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 297 LATVAVVGYTNAGKSTLVXXXXXXXXXXXXXXXATLDPRLKSV-VLPSGKVLLSDTVGFI 355
+A V +VGY NAGKS+L+ TL P L V V + L+D G I
Sbjct: 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 216
Query: 356 ------SDLPLQLVDAFHATLEEVVEADLLVHVLDCT 386
L L+ L + +L++VLD
Sbjct: 217 EGASEGKGLGLEF-------LRHIARTRVLLYVLDAA 246
>pdb|3NOS|A Chain A, Human Endothelial Nitric Oxide Synthase With Arginine
Substrate
pdb|3NOS|B Chain B, Human Endothelial Nitric Oxide Synthase With Arginine
Substrate
pdb|3EAH|A Chain A, Structure Of Inhibited Human Enos Oxygenase Domain
pdb|3EAH|B Chain B, Structure Of Inhibited Human Enos Oxygenase Domain
Length = 427
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 DVVTLFNRDPDDPPRLFLVQPRL 71
DV+ L + PD+PP LFL+ P L
Sbjct: 222 DVLPLLLQAPDEPPELFLLPPEL 244
>pdb|1M9M|A Chain A, Human Endothelial Nitric Oxide Synthase With 6-
Nitroindazole Bound
pdb|1M9M|B Chain B, Human Endothelial Nitric Oxide Synthase With 6-
Nitroindazole Bound
pdb|1M9Q|A Chain A, Human Endothelial Nitric Oxide Synthase With 5-
Nitroindazole Bound
pdb|1M9Q|B Chain B, Human Endothelial Nitric Oxide Synthase With 5-
Nitroindazole Bound
pdb|1M9J|A Chain A, Human Endothelial Nitric Oxide Synthase With Chlorzoxazone
Bound
pdb|1M9J|B Chain B, Human Endothelial Nitric Oxide Synthase With Chlorzoxazone
Bound
pdb|1M9K|A Chain A, Human Endothelial Nitric Oxide Synthase With 7-
Nitroindazole Bound
pdb|1M9K|B Chain B, Human Endothelial Nitric Oxide Synthase With 7-
Nitroindazole Bound
pdb|1M9R|A Chain A, Human Endothelial Nitric Oxide Synthase With 3-Bromo-7-
Nitroindazole Bound
pdb|1M9R|B Chain B, Human Endothelial Nitric Oxide Synthase With 3-Bromo-7-
Nitroindazole Bound
Length = 415
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 49 DVVTLFNRDPDDPPRLFLVQPRL 71
DV+ L + PD+PP LFL+ P L
Sbjct: 221 DVLPLLLQAPDEPPELFLLPPEL 243
>pdb|131L|A Chain A, Structures Of Randomly Generated Mutants Of T4 Lysozyme
Show That Protein Stability Can Be Enhanced By
Relaxation Of Strain And By Improved Hydrogen Bonding
Via Bound Solvent
Length = 164
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 98 YFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIF-- 155
Y DT+ + H++ ++PSL + K+ D G T NG +K E + +F
Sbjct: 18 YKDTEGYYSIGIGHLLTKSPSLNAAKSELDKAIGRNT--------NGVITKDEAEKLFNQ 69
Query: 156 -VNAILSGIQQRNLERAWGKPVLD------RVGLIIEIF 187
V+A + GI L A KPV D R LI +F
Sbjct: 70 DVDAAVRGI----LRNAKLKPVYDSLDAVRRAALINMVF 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,096,940
Number of Sequences: 62578
Number of extensions: 571489
Number of successful extensions: 1007
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 28
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)