Query 007599
Match_columns 596
No_of_seqs 643 out of 4427
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2262 HflX GTPases [General 100.0 7.3E-81 1.6E-85 652.6 36.7 319 60-428 2-321 (411)
2 PRK11058 GTPase HflX; Provisio 100.0 1.1E-68 2.3E-73 581.2 38.9 317 59-425 6-323 (426)
3 TIGR03156 GTP_HflX GTP-binding 100.0 1.1E-67 2.3E-72 561.2 38.3 314 63-425 1-315 (351)
4 KOG0410 Predicted GTP binding 100.0 2.2E-58 4.8E-63 466.9 21.5 399 77-592 4-407 (410)
5 PF13167 GTP-bdg_N: GTP-bindin 99.9 5.7E-27 1.2E-31 203.0 8.5 90 77-188 6-95 (95)
6 cd01878 HflX HflX subfamily. 99.9 8.3E-25 1.8E-29 214.3 24.2 167 251-426 1-168 (204)
7 cd01886 EF-G Elongation factor 99.9 9.4E-26 2E-30 232.2 12.9 241 299-561 1-267 (270)
8 PRK05291 trmE tRNA modificatio 99.9 2.2E-24 4.8E-29 236.8 23.3 216 172-425 117-335 (449)
9 cd04170 EF-G_bact Elongation f 99.9 1.1E-22 2.3E-27 208.8 13.1 239 299-561 1-265 (268)
10 cd04168 TetM_like Tet(M)-like 99.9 1.2E-22 2.6E-27 205.4 12.7 215 299-561 1-234 (237)
11 cd04169 RF3 RF3 subfamily. Pe 99.9 1.5E-21 3.1E-26 200.9 16.7 231 298-561 3-264 (267)
12 KOG1532 GTPase XAB1, interacts 99.9 6.1E-23 1.3E-27 205.3 4.5 205 296-570 18-272 (366)
13 PF02421 FeoB_N: Ferrous iron 99.8 3.5E-21 7.5E-26 182.4 11.5 120 299-427 2-121 (156)
14 COG0486 ThdF Predicted GTPase 99.8 2E-19 4.4E-24 193.0 23.4 221 172-429 119-342 (454)
15 PRK12299 obgE GTPase CgtA; Rev 99.8 2.3E-19 4.9E-24 190.1 17.8 129 296-426 157-286 (335)
16 TIGR00484 EF-G translation elo 99.8 5.7E-20 1.2E-24 211.9 13.7 246 296-563 9-280 (689)
17 COG1160 Predicted GTPases [Gen 99.8 2.6E-19 5.5E-24 191.7 16.6 121 298-425 4-126 (444)
18 PRK00007 elongation factor G; 99.8 9.4E-20 2E-24 210.1 14.1 246 296-563 9-281 (693)
19 COG1159 Era GTPase [General fu 99.8 3.9E-19 8.4E-24 181.5 14.7 125 296-428 5-131 (298)
20 PRK12739 elongation factor G; 99.8 2.5E-19 5.3E-24 206.7 13.4 246 296-563 7-279 (691)
21 TIGR00436 era GTP-binding prot 99.8 2.1E-18 4.6E-23 177.4 18.6 118 299-425 2-121 (270)
22 PRK12296 obgE GTPase CgtA; Rev 99.8 1E-18 2.2E-23 192.4 16.8 130 296-426 158-299 (500)
23 PRK12298 obgE GTPase CgtA; Rev 99.8 2.6E-18 5.7E-23 185.4 17.9 126 297-426 159-290 (390)
24 cd01898 Obg Obg subfamily. Th 99.8 3E-18 6.5E-23 161.6 15.6 124 299-426 2-129 (170)
25 PRK12297 obgE GTPase CgtA; Rev 99.8 4.7E-18 1E-22 184.8 18.5 125 297-423 158-286 (424)
26 TIGR02729 Obg_CgtA Obg family 99.8 4E-18 8.7E-23 180.3 17.1 129 296-426 156-288 (329)
27 TIGR00450 mnmE_trmE_thdF tRNA 99.8 3.3E-17 7.2E-22 179.6 24.3 213 172-425 109-324 (442)
28 PF00009 GTP_EFTU: Elongation 99.8 1.3E-18 2.8E-23 169.1 11.8 114 296-424 2-135 (188)
29 KOG1489 Predicted GTP-binding 99.8 1.8E-18 3.9E-23 176.8 11.3 129 296-426 195-327 (366)
30 cd01897 NOG NOG1 is a nucleola 99.8 1.2E-17 2.7E-22 157.3 16.1 126 298-426 1-128 (168)
31 PRK15494 era GTPase Era; Provi 99.8 2.7E-17 5.9E-22 174.7 18.8 121 297-425 52-174 (339)
32 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.1E-17 4.6E-22 155.3 15.6 113 298-425 1-116 (168)
33 PRK00741 prfC peptide chain re 99.7 8.1E-18 1.8E-22 187.9 14.3 227 297-563 10-275 (526)
34 cd04171 SelB SelB subfamily. 99.7 2.4E-17 5.2E-22 153.8 14.7 114 299-426 2-119 (164)
35 PRK13351 elongation factor G; 99.7 6.7E-18 1.4E-22 194.9 12.7 246 296-563 7-279 (687)
36 TIGR00491 aIF-2 translation in 99.7 2.1E-17 4.6E-22 186.4 16.2 117 296-427 3-137 (590)
37 COG0532 InfB Translation initi 99.7 1.6E-17 3.4E-22 180.7 14.4 117 296-427 4-123 (509)
38 cd01879 FeoB Ferrous iron tran 99.7 7.1E-17 1.5E-21 149.9 14.8 116 302-426 1-116 (158)
39 PRK00089 era GTPase Era; Revie 99.7 1.1E-16 2.4E-21 166.1 17.8 120 297-425 5-127 (292)
40 cd01894 EngA1 EngA1 subfamily. 99.7 1.2E-16 2.5E-21 147.9 16.0 117 301-425 1-119 (157)
41 cd04164 trmE TrmE (MnmE, ThdF, 99.7 3.3E-16 7.1E-21 144.6 18.3 119 298-425 2-121 (157)
42 cd01896 DRG The developmentall 99.7 1.7E-16 3.6E-21 160.3 17.6 126 299-427 2-137 (233)
43 PRK03003 GTP-binding protein D 99.7 1.2E-16 2.6E-21 176.9 17.9 124 296-426 210-337 (472)
44 COG1084 Predicted GTPase [Gene 99.7 4.9E-16 1.1E-20 160.2 20.5 169 253-429 125-298 (346)
45 cd01888 eIF2_gamma eIF2-gamma 99.7 6.5E-17 1.4E-21 159.5 13.2 115 299-426 2-152 (203)
46 cd01889 SelB_euk SelB subfamil 99.7 1.2E-16 2.5E-21 155.6 14.4 113 299-426 2-135 (192)
47 TIGR03594 GTPase_EngA ribosome 99.7 2.3E-16 5E-21 172.0 18.3 122 296-424 171-296 (429)
48 COG1160 Predicted GTPases [Gen 99.7 1E-16 2.2E-21 171.8 14.7 125 296-427 177-305 (444)
49 COG0480 FusA Translation elong 99.7 4E-17 8.6E-22 186.1 12.3 244 296-563 9-279 (697)
50 cd01861 Rab6 Rab6 subfamily. 99.7 2.6E-16 5.6E-21 147.0 15.5 116 299-425 2-119 (161)
51 cd04163 Era Era subfamily. Er 99.7 4.3E-16 9.2E-21 144.2 16.5 121 297-425 3-125 (168)
52 TIGR03594 GTPase_EngA ribosome 99.7 4.2E-16 9E-21 170.1 18.7 119 299-425 1-121 (429)
53 cd04109 Rab28 Rab28 subfamily. 99.7 4.4E-16 9.6E-21 154.6 17.0 119 299-425 2-123 (215)
54 PRK00093 GTP-binding protein D 99.7 3.2E-16 6.9E-21 171.4 17.5 123 296-425 172-298 (435)
55 PRK03003 GTP-binding protein D 99.7 5.2E-16 1.1E-20 171.8 19.3 122 296-425 37-160 (472)
56 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.8E-16 3.9E-21 155.9 13.6 114 298-425 3-132 (195)
57 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 5.8E-16 1.3E-20 146.0 16.3 118 298-426 3-122 (166)
58 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.7E-16 5.9E-21 148.0 14.0 117 299-426 1-122 (167)
59 cd01864 Rab19 Rab19 subfamily. 99.7 5.4E-16 1.2E-20 146.2 16.0 119 297-426 3-123 (165)
60 COG0536 Obg Predicted GTPase [ 99.7 1.4E-16 3E-21 164.8 12.8 129 297-427 159-291 (369)
61 cd01868 Rab11_like Rab11-like. 99.7 6.6E-16 1.4E-20 145.3 16.0 119 297-426 3-123 (165)
62 cd01862 Rab7 Rab7 subfamily. 99.7 1.4E-15 3E-20 143.5 18.0 119 299-425 2-123 (172)
63 PRK09518 bifunctional cytidyla 99.7 4E-16 8.8E-21 180.7 17.4 124 296-426 449-576 (712)
64 cd04142 RRP22 RRP22 subfamily. 99.7 1.4E-15 3.1E-20 149.6 18.4 127 299-425 2-130 (198)
65 cd01895 EngA2 EngA2 subfamily. 99.7 8.6E-16 1.9E-20 143.7 16.0 123 297-426 2-128 (174)
66 PRK04004 translation initiatio 99.7 3.4E-16 7.3E-21 177.0 15.7 116 296-426 5-138 (586)
67 cd00881 GTP_translation_factor 99.7 7.4E-16 1.6E-20 147.1 15.7 113 299-426 1-129 (189)
68 cd01881 Obg_like The Obg-like 99.7 3.3E-16 7E-21 148.1 13.0 124 302-428 1-137 (176)
69 cd01865 Rab3 Rab3 subfamily. 99.7 1E-15 2.2E-20 144.7 16.2 118 298-426 2-121 (165)
70 smart00175 RAB Rab subfamily o 99.7 1E-15 2.2E-20 143.0 16.0 117 299-426 2-120 (164)
71 cd04119 RJL RJL (RabJ-Like) su 99.7 1.7E-15 3.7E-20 141.6 16.7 119 299-425 2-124 (168)
72 PRK05306 infB translation init 99.7 5.9E-16 1.3E-20 179.0 16.5 116 296-426 289-404 (787)
73 COG0370 FeoB Fe2+ transport sy 99.7 3.1E-16 6.6E-21 174.9 13.6 120 298-426 4-123 (653)
74 cd01866 Rab2 Rab2 subfamily. 99.7 1.7E-15 3.7E-20 143.8 16.7 118 297-425 4-123 (168)
75 PRK00093 GTP-binding protein D 99.7 1.7E-15 3.6E-20 165.8 18.8 120 298-425 2-123 (435)
76 cd01867 Rab8_Rab10_Rab13_like 99.7 1.6E-15 3.5E-20 143.6 16.2 119 297-426 3-123 (167)
77 KOG1144 Translation initiation 99.7 8.9E-17 1.9E-21 177.4 8.4 199 295-564 473-689 (1064)
78 smart00173 RAS Ras subfamily o 99.7 2.7E-15 5.8E-20 140.8 17.3 117 299-426 2-120 (164)
79 TIGR00503 prfC peptide chain r 99.7 6.7E-16 1.5E-20 172.6 15.4 228 297-563 11-276 (527)
80 PRK09866 hypothetical protein; 99.7 1.8E-15 3.9E-20 168.2 18.4 61 254-332 44-105 (741)
81 cd04166 CysN_ATPS CysN_ATPS su 99.7 3.8E-16 8.1E-21 154.6 11.6 113 299-425 1-144 (208)
82 TIGR00487 IF-2 translation ini 99.7 7.4E-16 1.6E-20 174.0 15.2 115 296-425 86-201 (587)
83 PRK04213 GTP-binding protein; 99.7 2E-15 4.3E-20 147.4 16.2 120 297-426 9-145 (201)
84 cd04157 Arl6 Arl6 subfamily. 99.7 2.3E-15 4.9E-20 140.6 15.9 117 299-425 1-118 (162)
85 TIGR00475 selB selenocysteine- 99.7 8.7E-16 1.9E-20 173.8 15.6 114 299-427 2-119 (581)
86 cd04122 Rab14 Rab14 subfamily. 99.7 2.5E-15 5.4E-20 142.0 16.2 118 298-426 3-122 (166)
87 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.1E-15 6.7E-20 139.0 16.5 117 298-425 2-120 (162)
88 PRK10512 selenocysteinyl-tRNA- 99.7 1E-15 2.2E-20 174.1 15.9 114 299-426 2-119 (614)
89 cd04144 Ras2 Ras2 subfamily. 99.7 3.1E-15 6.8E-20 145.3 17.2 118 299-425 1-120 (190)
90 cd04140 ARHI_like ARHI subfami 99.7 3.3E-15 7.2E-20 141.2 16.9 118 298-425 2-122 (165)
91 cd04124 RabL2 RabL2 subfamily. 99.7 2.2E-15 4.8E-20 142.2 15.6 114 299-424 2-117 (161)
92 cd04136 Rap_like Rap-like subf 99.7 3.2E-15 7E-20 139.7 16.5 117 298-425 2-120 (163)
93 cd04114 Rab30 Rab30 subfamily. 99.7 4.2E-15 9.1E-20 140.2 16.8 120 296-426 6-127 (169)
94 PRK09518 bifunctional cytidyla 99.6 3E-15 6.5E-20 173.4 18.9 122 296-425 274-397 (712)
95 cd04145 M_R_Ras_like M-Ras/R-R 99.6 5.7E-15 1.2E-19 138.2 17.3 118 298-426 3-122 (164)
96 PRK09554 feoB ferrous iron tra 99.6 1.7E-15 3.7E-20 175.8 16.7 119 298-425 4-126 (772)
97 cd04125 RabA_like RabA-like su 99.6 5.3E-15 1.1E-19 143.1 17.2 116 299-425 2-119 (188)
98 cd04139 RalA_RalB RalA/RalB su 99.6 6E-15 1.3E-19 137.6 16.9 116 299-425 2-119 (164)
99 COG1163 DRG Predicted GTPase [ 99.6 1.6E-15 3.4E-20 156.0 13.8 152 258-417 28-180 (365)
100 cd01890 LepA LepA subfamily. 99.6 3.4E-15 7.4E-20 142.3 15.3 112 299-425 2-133 (179)
101 PRK12740 elongation factor G; 99.6 5.3E-16 1.1E-20 178.7 11.6 237 303-563 1-263 (668)
102 cd04113 Rab4 Rab4 subfamily. 99.6 3.5E-15 7.6E-20 139.8 15.1 116 299-425 2-119 (161)
103 CHL00189 infB translation init 99.6 1.9E-15 4E-20 173.6 15.8 116 296-426 243-362 (742)
104 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 7.9E-15 1.7E-19 143.8 17.9 119 299-425 2-124 (201)
105 cd01863 Rab18 Rab18 subfamily. 99.6 4.9E-15 1.1E-19 138.6 15.6 116 299-424 2-119 (161)
106 cd00879 Sar1 Sar1 subfamily. 99.6 6.7E-15 1.5E-19 142.1 16.9 115 297-425 19-134 (190)
107 cd04112 Rab26 Rab26 subfamily. 99.6 9.9E-15 2.1E-19 142.0 18.0 116 299-425 2-120 (191)
108 cd04156 ARLTS1 ARLTS1 subfamil 99.6 5.6E-15 1.2E-19 138.1 15.7 112 300-425 2-115 (160)
109 KOG1145 Mitochondrial translat 99.6 1.7E-15 3.7E-20 163.7 13.5 117 296-427 152-269 (683)
110 cd04151 Arl1 Arl1 subfamily. 99.6 6.9E-15 1.5E-19 137.9 16.1 113 299-425 1-114 (158)
111 cd04106 Rab23_lke Rab23-like s 99.6 7.4E-15 1.6E-19 137.3 16.1 116 299-426 2-121 (162)
112 cd04123 Rab21 Rab21 subfamily. 99.6 8.9E-15 1.9E-19 136.0 16.5 116 299-425 2-119 (162)
113 cd01860 Rab5_related Rab5-rela 99.6 6.7E-15 1.5E-19 137.7 15.8 117 298-425 2-120 (163)
114 TIGR03598 GTPase_YsxC ribosome 99.6 3.3E-15 7.1E-20 143.9 14.0 122 296-427 17-145 (179)
115 PRK15467 ethanolamine utilizat 99.6 4.2E-15 9.2E-20 141.0 14.4 103 299-425 3-105 (158)
116 cd04110 Rab35 Rab35 subfamily. 99.6 1.2E-14 2.5E-19 142.6 17.9 119 296-426 5-125 (199)
117 cd04154 Arl2 Arl2 subfamily. 99.6 7.6E-15 1.6E-19 140.0 16.1 116 296-425 13-129 (173)
118 cd04175 Rap1 Rap1 subgroup. T 99.6 1.2E-14 2.7E-19 136.7 16.9 117 298-425 2-120 (164)
119 cd04165 GTPBP1_like GTPBP1-lik 99.6 3.7E-15 8E-20 149.7 14.1 115 299-428 1-155 (224)
120 cd00154 Rab Rab family. Rab G 99.6 9.2E-15 2E-19 134.2 15.5 115 299-424 2-118 (159)
121 COG0218 Predicted GTPase [Gene 99.6 1.1E-14 2.5E-19 141.7 16.7 124 296-429 23-153 (200)
122 PRK00454 engB GTP-binding prot 99.6 5.4E-15 1.2E-19 143.1 14.4 122 296-427 23-151 (196)
123 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 9.6E-15 2.1E-19 141.2 16.1 115 298-425 4-123 (183)
124 PRK12317 elongation factor 1-a 99.6 2E-15 4.4E-20 165.0 12.4 116 296-425 5-153 (425)
125 cd04159 Arl10_like Arl10-like 99.6 1.6E-14 3.5E-19 132.9 16.5 114 300-426 2-116 (159)
126 PTZ00369 Ras-like protein; Pro 99.6 1.3E-14 2.9E-19 140.8 16.8 118 297-425 5-124 (189)
127 cd01891 TypA_BipA TypA (tyrosi 99.6 8.9E-15 1.9E-19 142.6 15.4 114 297-425 2-131 (194)
128 PTZ00327 eukaryotic translatio 99.6 2.8E-15 6E-20 164.9 13.1 118 296-426 33-186 (460)
129 smart00178 SAR Sar1p-like memb 99.6 1.2E-14 2.6E-19 140.8 16.0 115 297-425 17-132 (184)
130 CHL00071 tufA elongation facto 99.6 4.2E-15 9.1E-20 161.8 14.3 116 296-426 11-143 (409)
131 cd04158 ARD1 ARD1 subfamily. 99.6 1.7E-14 3.6E-19 137.4 16.5 113 299-425 1-114 (169)
132 cd04149 Arf6 Arf6 subfamily. 99.6 1.9E-14 4E-19 137.4 16.9 116 296-425 8-124 (168)
133 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1.9E-14 4.2E-19 134.3 16.6 114 299-426 1-115 (158)
134 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.8E-14 4E-19 135.1 16.4 116 299-426 2-122 (164)
135 PLN03118 Rab family protein; P 99.6 3.1E-14 6.8E-19 140.7 18.9 119 297-426 14-135 (211)
136 cd00880 Era_like Era (E. coli 99.6 2.1E-14 4.6E-19 130.8 16.3 120 302-429 1-122 (163)
137 PF01926 MMR_HSR1: 50S ribosom 99.6 9.4E-15 2E-19 130.7 13.6 114 299-420 1-116 (116)
138 cd04120 Rab12 Rab12 subfamily. 99.6 1.9E-14 4.2E-19 142.3 17.2 116 299-425 2-119 (202)
139 PRK12736 elongation factor Tu; 99.6 5.1E-15 1.1E-19 160.4 14.1 116 296-426 11-143 (394)
140 cd04150 Arf1_5_like Arf1-Arf5- 99.6 2.1E-14 4.7E-19 135.6 16.6 113 299-425 2-115 (159)
141 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 2.2E-14 4.8E-19 137.3 16.7 114 298-425 16-130 (174)
142 PLN03110 Rab GTPase; Provision 99.6 1.9E-14 4.1E-19 143.3 16.7 118 297-425 12-131 (216)
143 cd04127 Rab27A Rab27a subfamil 99.6 2.1E-14 4.7E-19 137.1 16.4 119 297-426 4-135 (180)
144 cd00876 Ras Ras family. The R 99.6 2.3E-14 5E-19 132.9 15.7 116 299-425 1-118 (160)
145 KOG1191 Mitochondrial GTPase [ 99.6 2.8E-14 6.1E-19 153.4 18.2 127 298-426 269-404 (531)
146 cd01883 EF1_alpha Eukaryotic e 99.6 6.6E-15 1.4E-19 147.0 12.6 115 299-426 1-152 (219)
147 cd04176 Rap2 Rap2 subgroup. T 99.6 3E-14 6.5E-19 133.7 16.3 117 298-425 2-120 (163)
148 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.4E-14 5.2E-19 137.0 15.6 117 299-426 2-121 (170)
149 smart00177 ARF ARF-like small 99.6 4.8E-14 1E-18 135.4 17.6 115 297-425 13-128 (175)
150 cd04116 Rab9 Rab9 subfamily. 99.6 4.7E-14 1E-18 133.5 17.1 121 296-424 4-127 (170)
151 cd01893 Miro1 Miro1 subfamily. 99.6 3.6E-14 7.8E-19 134.4 15.9 114 299-426 2-118 (166)
152 cd04155 Arl3 Arl3 subfamily. 99.6 5.5E-14 1.2E-18 133.2 17.2 116 297-426 14-130 (173)
153 TIGR02528 EutP ethanolamine ut 99.6 1.6E-14 3.5E-19 132.8 12.6 101 299-425 2-102 (142)
154 cd04147 Ras_dva Ras-dva subfam 99.6 3.8E-14 8.2E-19 138.8 15.7 117 299-426 1-119 (198)
155 TIGR00437 feoB ferrous iron tr 99.6 1.2E-14 2.7E-19 164.7 14.0 113 304-425 1-113 (591)
156 cd00877 Ran Ran (Ras-related n 99.6 5.2E-14 1.1E-18 133.9 16.1 112 299-424 2-117 (166)
157 cd04137 RheB Rheb (Ras Homolog 99.6 8.4E-14 1.8E-18 133.2 17.4 116 298-425 2-120 (180)
158 cd04117 Rab15 Rab15 subfamily. 99.6 5E-14 1.1E-18 133.1 15.5 117 299-426 2-120 (161)
159 cd01892 Miro2 Miro2 subfamily. 99.6 8.5E-14 1.8E-18 132.9 17.3 118 296-426 3-123 (169)
160 TIGR03680 eif2g_arch translati 99.6 1.5E-14 3.2E-19 157.4 13.6 118 296-426 3-149 (406)
161 cd04118 Rab24 Rab24 subfamily. 99.6 7.7E-14 1.7E-18 135.2 17.0 115 299-426 2-120 (193)
162 PRK12735 elongation factor Tu; 99.6 1.7E-14 3.6E-19 156.5 13.6 115 296-425 11-142 (396)
163 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 9.3E-14 2E-18 133.1 17.2 116 298-425 3-121 (172)
164 PLN00223 ADP-ribosylation fact 99.6 1.2E-13 2.6E-18 133.7 18.0 115 297-425 17-132 (181)
165 cd04111 Rab39 Rab39 subfamily. 99.6 7.7E-14 1.7E-18 138.5 16.9 118 298-426 3-124 (211)
166 KOG0465 Mitochondrial elongati 99.6 1E-15 2.2E-20 167.0 3.7 245 296-562 38-308 (721)
167 PLN03126 Elongation factor Tu; 99.6 3.3E-14 7.1E-19 157.3 15.4 116 296-426 80-212 (478)
168 PRK00049 elongation factor Tu; 99.6 2.3E-14 4.9E-19 155.5 13.9 115 296-425 11-142 (396)
169 KOG1423 Ras-like GTPase ERA [C 99.6 1.5E-14 3.2E-19 147.6 11.5 127 296-428 71-202 (379)
170 TIGR00485 EF-Tu translation el 99.6 2.8E-14 6E-19 154.7 14.3 117 296-426 11-143 (394)
171 PTZ00133 ADP-ribosylation fact 99.6 1.3E-13 2.7E-18 133.6 17.4 114 298-425 18-132 (182)
172 PLN03108 Rab family protein; P 99.6 7.6E-14 1.7E-18 138.3 16.2 118 297-425 6-125 (210)
173 PRK04000 translation initiatio 99.6 2.5E-14 5.5E-19 155.8 13.9 118 296-426 8-154 (411)
174 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.2E-13 2.6E-18 131.4 16.6 120 298-426 3-124 (170)
175 PTZ00141 elongation factor 1- 99.6 2.6E-14 5.7E-19 157.2 13.8 116 296-424 6-158 (446)
176 cd00157 Rho Rho (Ras homology) 99.6 6.9E-14 1.5E-18 131.7 14.9 119 299-429 2-122 (171)
177 cd01874 Cdc42 Cdc42 subfamily. 99.6 5.6E-14 1.2E-18 135.1 14.1 116 298-426 2-120 (175)
178 TIGR00231 small_GTP small GTP- 99.5 5.4E-14 1.2E-18 128.1 13.1 118 298-426 2-123 (161)
179 cd04128 Spg1 Spg1p. Spg1p (se 99.5 7.7E-14 1.7E-18 135.3 14.9 115 299-425 2-118 (182)
180 cd04121 Rab40 Rab40 subfamily. 99.5 2.1E-13 4.5E-18 133.4 18.1 117 297-425 6-124 (189)
181 cd04177 RSR1 RSR1 subgroup. R 99.5 1.2E-13 2.5E-18 131.0 15.6 118 298-426 2-121 (168)
182 PLN03127 Elongation factor Tu; 99.5 5.4E-14 1.2E-18 154.6 15.2 115 296-425 60-191 (447)
183 cd01870 RhoA_like RhoA-like su 99.5 5.2E-14 1.1E-18 133.6 13.1 117 298-427 2-121 (175)
184 cd04132 Rho4_like Rho4-like su 99.5 1.3E-13 2.8E-18 132.8 16.0 116 299-426 2-120 (187)
185 cd01899 Ygr210 Ygr210 subfamil 99.5 8.4E-14 1.8E-18 146.7 15.9 87 300-387 1-111 (318)
186 TIGR01394 TypA_BipA GTP-bindin 99.5 6.4E-14 1.4E-18 158.7 15.9 114 298-426 2-131 (594)
187 cd04126 Rab20 Rab20 subfamily. 99.5 2.1E-13 4.5E-18 136.7 17.8 114 299-426 2-115 (220)
188 cd01876 YihA_EngB The YihA (En 99.5 1.2E-13 2.5E-18 128.3 14.9 119 300-428 2-127 (170)
189 cd04146 RERG_RasL11_like RERG/ 99.5 1.2E-13 2.5E-18 130.3 14.9 118 299-425 1-120 (165)
190 cd04143 Rhes_like Rhes_like su 99.5 2.2E-13 4.8E-18 138.8 17.7 118 299-425 2-127 (247)
191 cd04161 Arl2l1_Arl13_like Arl2 99.5 1.5E-13 3.2E-18 130.9 15.2 115 299-427 1-116 (167)
192 PRK10218 GTP-binding protein; 99.5 9.7E-14 2.1E-18 157.3 16.2 116 296-426 4-135 (607)
193 smart00174 RHO Rho (Ras homolo 99.5 8.4E-14 1.8E-18 132.1 13.0 115 300-426 1-117 (174)
194 TIGR02034 CysN sulfate adenyly 99.5 3.8E-14 8.2E-19 154.3 11.7 114 299-426 2-148 (406)
195 TIGR00483 EF-1_alpha translati 99.5 4.4E-14 9.6E-19 154.6 12.3 117 296-425 6-155 (426)
196 cd04135 Tc10 TC10 subfamily. 99.5 7.3E-14 1.6E-18 132.5 12.1 116 299-427 2-120 (174)
197 cd01871 Rac1_like Rac1-like su 99.5 1.2E-13 2.6E-18 132.8 13.2 115 298-425 2-119 (174)
198 cd04148 RGK RGK subfamily. Th 99.5 4.9E-13 1.1E-17 133.7 17.5 115 299-426 2-121 (221)
199 PRK05124 cysN sulfate adenylyl 99.5 7.5E-14 1.6E-18 154.6 12.7 116 296-425 26-174 (474)
200 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 3.5E-13 7.7E-18 128.0 15.2 113 300-426 2-114 (164)
201 PF10662 PduV-EutP: Ethanolami 99.5 1.5E-13 3.2E-18 128.2 12.2 102 298-425 2-103 (143)
202 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.4E-13 5.2E-18 133.1 14.0 125 299-427 2-132 (196)
203 PLN00043 elongation factor 1-a 99.5 1.4E-13 3E-18 151.5 13.4 116 296-424 6-158 (447)
204 PRK05506 bifunctional sulfate 99.5 8.2E-14 1.8E-18 159.6 12.0 116 296-425 23-171 (632)
205 cd04134 Rho3 Rho3 subfamily. 99.5 2.7E-13 5.8E-18 131.8 13.9 117 299-427 2-120 (189)
206 PLN03071 GTP-binding nuclear p 99.5 4.9E-13 1.1E-17 133.6 16.1 117 296-424 12-130 (219)
207 TIGR01393 lepA GTP-binding pro 99.5 2.3E-13 4.9E-18 154.5 15.4 115 296-425 2-136 (595)
208 KOG0084 GTPase Rab1/YPT1, smal 99.5 6.8E-13 1.5E-17 128.1 14.7 123 296-429 8-132 (205)
209 PRK14845 translation initiatio 99.5 4E-13 8.8E-18 158.8 14.7 114 296-428 464-595 (1049)
210 PRK05433 GTP-binding protein L 99.5 7.1E-13 1.5E-17 150.6 16.2 115 296-425 6-140 (600)
211 cd01875 RhoG RhoG subfamily. 99.5 8.2E-13 1.8E-17 128.8 14.4 117 298-426 4-122 (191)
212 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.2E-12 2.7E-17 124.8 15.0 115 299-426 2-119 (173)
213 KOG0092 GTPase Rab5/YPT51 and 99.5 4.2E-13 9.1E-18 129.1 11.5 122 297-429 5-128 (200)
214 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 5.6E-12 1.2E-16 127.4 20.1 116 297-425 13-131 (232)
215 PRK09602 translation-associate 99.5 1.7E-12 3.7E-17 140.6 17.3 88 298-386 2-113 (396)
216 cd04129 Rho2 Rho2 subfamily. 99.4 2.1E-12 4.6E-17 125.2 15.6 116 299-426 3-120 (187)
217 cd04131 Rnd Rnd subfamily. Th 99.4 2.1E-12 4.6E-17 124.8 15.0 115 298-425 2-119 (178)
218 cd04133 Rop_like Rop subfamily 99.4 2.6E-12 5.6E-17 124.3 15.4 117 298-426 2-120 (176)
219 cd00882 Ras_like_GTPase Ras-li 99.4 2.8E-12 6.2E-17 114.9 14.2 116 302-428 1-119 (157)
220 smart00176 RAN Ran (Ras-relate 99.4 4E-12 8.6E-17 125.6 15.9 108 303-424 1-112 (200)
221 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 4.2E-12 9.2E-17 123.4 15.8 116 297-425 5-123 (182)
222 cd04103 Centaurin_gamma Centau 99.4 2.5E-12 5.4E-17 121.9 13.6 109 299-424 2-112 (158)
223 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 5.6E-12 1.2E-16 126.6 16.4 116 298-426 2-120 (222)
224 cd04105 SR_beta Signal recogni 99.4 2.4E-12 5.1E-17 127.2 12.6 120 298-429 1-127 (203)
225 PF00025 Arf: ADP-ribosylation 99.4 7.3E-12 1.6E-16 120.7 14.4 117 296-426 13-130 (175)
226 cd01885 EF2 EF2 (for archaea a 99.4 3.7E-12 8.1E-17 127.9 12.2 112 299-425 2-139 (222)
227 COG4108 PrfC Peptide chain rel 99.4 6.4E-12 1.4E-16 133.6 14.4 241 298-576 13-290 (528)
228 KOG1490 GTP-binding protein CR 99.4 8.3E-12 1.8E-16 134.4 15.4 164 257-429 129-299 (620)
229 PF00071 Ras: Ras family; Int 99.4 1.5E-11 3.3E-16 115.1 15.0 116 299-425 1-118 (162)
230 KOG0462 Elongation factor-type 99.4 2.2E-12 4.8E-17 140.0 10.3 118 296-428 59-194 (650)
231 cd04104 p47_IIGP_like p47 (47- 99.4 1.3E-11 2.9E-16 121.2 14.8 117 298-426 2-122 (197)
232 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 1.4E-11 3.1E-16 118.8 13.5 121 297-429 22-146 (221)
233 KOG0078 GTP-binding protein SE 99.3 3.1E-11 6.7E-16 118.0 15.8 123 296-429 11-135 (207)
234 cd01873 RhoBTB RhoBTB subfamil 99.3 1.9E-11 4.1E-16 120.2 12.5 113 298-425 3-134 (195)
235 PTZ00132 GTP-binding nuclear p 99.3 1.1E-10 2.4E-15 115.6 17.9 116 296-425 8-127 (215)
236 KOG0073 GTP-binding ADP-ribosy 99.3 6E-11 1.3E-15 111.5 14.8 115 298-426 17-132 (185)
237 cd04167 Snu114p Snu114p subfam 99.3 2.2E-11 4.8E-16 120.9 12.7 113 299-426 2-138 (213)
238 COG5256 TEF1 Translation elong 99.3 1.6E-11 3.4E-16 130.5 11.7 118 296-426 6-160 (428)
239 KOG0098 GTPase Rab2, small G p 99.3 3.8E-11 8.3E-16 115.0 12.8 121 297-429 6-129 (216)
240 COG3276 SelB Selenocysteine-sp 99.3 2.1E-11 4.5E-16 130.4 11.2 116 299-428 2-120 (447)
241 cd01900 YchF YchF subfamily. 99.2 3.4E-11 7.4E-16 124.4 11.6 86 300-386 1-103 (274)
242 PTZ00258 GTP-binding protein; 99.2 4.7E-11 1E-15 128.7 13.0 90 296-386 20-126 (390)
243 PF08477 Miro: Miro-like prote 99.2 2.5E-11 5.5E-16 108.1 9.0 115 299-422 1-119 (119)
244 cd01853 Toc34_like Toc34-like 99.2 3.4E-10 7.3E-15 115.7 17.1 132 296-429 30-167 (249)
245 COG3596 Predicted GTPase [Gene 99.2 8.1E-11 1.8E-15 119.5 12.4 125 296-426 38-163 (296)
246 COG0481 LepA Membrane GTPase L 99.2 2.5E-11 5.4E-16 130.1 8.9 118 296-428 8-145 (603)
247 KOG0394 Ras-related GTPase [Ge 99.2 1.3E-10 2.9E-15 111.1 12.2 124 296-427 8-134 (210)
248 PRK09601 GTP-binding protein Y 99.2 1.2E-10 2.6E-15 124.3 12.9 88 298-386 3-107 (364)
249 cd04102 RabL3 RabL3 (Rab-like3 99.2 2.8E-10 6.1E-15 112.7 14.0 118 299-427 2-145 (202)
250 KOG0087 GTPase Rab11/YPT3, sma 99.2 6.3E-11 1.4E-15 115.7 9.1 119 297-426 14-134 (222)
251 COG5257 GCD11 Translation init 99.2 4.4E-11 9.4E-16 123.1 8.3 121 296-429 9-158 (415)
252 PRK09435 membrane ATPase/prote 99.2 3.2E-10 6.9E-15 120.1 14.6 28 537-564 235-262 (332)
253 KOG1486 GTP-binding protein DR 99.2 4.8E-11 1E-15 119.1 7.5 124 294-420 59-182 (364)
254 smart00053 DYNc Dynamin, GTPas 99.2 5.2E-10 1.1E-14 113.5 15.1 126 296-427 25-208 (240)
255 PLN00116 translation elongatio 99.2 1E-10 2.2E-15 138.1 11.3 114 296-424 18-163 (843)
256 COG1100 GTPase SAR1 and relate 99.1 1.3E-09 2.8E-14 107.5 16.8 120 298-429 6-129 (219)
257 PTZ00416 elongation factor 2; 99.1 1.4E-10 3.1E-15 136.6 11.7 114 296-424 18-157 (836)
258 COG2229 Predicted GTPase [Gene 99.1 1E-09 2.2E-14 105.3 14.8 119 296-429 9-139 (187)
259 cd01850 CDC_Septin CDC/Septin. 99.1 7.9E-10 1.7E-14 114.6 14.4 126 297-429 4-161 (276)
260 KOG0090 Signal recognition par 99.1 1.7E-10 3.7E-15 112.9 8.8 123 298-429 39-163 (238)
261 KOG0086 GTPase Rab4, small G p 99.1 6.6E-10 1.4E-14 103.3 12.1 121 297-429 9-132 (214)
262 KOG0464 Elongation factor G [T 99.1 3.6E-12 7.7E-17 134.0 -3.3 253 297-578 37-325 (753)
263 TIGR00991 3a0901s02IAP34 GTP-b 99.1 1.2E-09 2.6E-14 114.2 15.5 129 296-428 37-170 (313)
264 cd01882 BMS1 Bms1. Bms1 is an 99.1 9.7E-10 2.1E-14 110.5 14.3 107 296-426 38-148 (225)
265 KOG0088 GTPase Rab21, small G 99.1 8.9E-11 1.9E-15 109.6 6.1 120 297-429 13-136 (218)
266 PLN00023 GTP-binding protein; 99.1 6.5E-10 1.4E-14 116.9 13.1 123 296-426 20-166 (334)
267 KOG0080 GTPase Rab18, small G 99.1 8.7E-10 1.9E-14 103.4 12.0 118 297-425 11-131 (209)
268 PF00350 Dynamin_N: Dynamin fa 99.1 6.4E-10 1.4E-14 105.3 11.1 112 300-421 1-168 (168)
269 PF03029 ATP_bind_1: Conserved 99.1 3.4E-11 7.4E-16 122.1 1.3 80 345-427 92-172 (238)
270 PRK07560 elongation factor EF- 99.1 5.7E-10 1.2E-14 130.0 11.0 117 296-427 19-155 (731)
271 KOG0461 Selenocysteine-specifi 99.1 1.2E-09 2.5E-14 113.4 11.8 117 298-429 8-140 (522)
272 TIGR00490 aEF-2 translation el 99.0 6.4E-10 1.4E-14 129.4 11.0 117 296-427 18-154 (720)
273 TIGR02836 spore_IV_A stage IV 99.0 2.3E-09 5.1E-14 114.8 14.0 123 296-424 16-193 (492)
274 COG1703 ArgK Putative periplas 99.0 3.7E-10 8.1E-15 115.9 7.4 28 538-565 230-257 (323)
275 KOG0095 GTPase Rab30, small G 99.0 7.3E-10 1.6E-14 102.6 8.2 122 297-429 7-130 (213)
276 COG1217 TypA Predicted membran 99.0 8.5E-10 1.8E-14 118.3 9.6 118 296-428 4-137 (603)
277 TIGR00750 lao LAO/AO transport 99.0 6.2E-09 1.3E-13 109.1 15.6 27 538-564 214-240 (300)
278 COG0050 TufB GTPases - transla 99.0 1.6E-09 3.4E-14 110.6 9.9 120 296-429 11-146 (394)
279 KOG0458 Elongation factor 1 al 99.0 1.2E-09 2.6E-14 120.1 9.7 121 296-429 176-333 (603)
280 PF09439 SRPRB: Signal recogni 99.0 1.1E-09 2.4E-14 106.4 8.4 119 298-428 4-129 (181)
281 COG0012 Predicted GTPase, prob 99.0 1.2E-09 2.5E-14 115.7 8.5 87 298-387 3-109 (372)
282 PRK13768 GTPase; Provisional 99.0 1.1E-09 2.4E-14 112.1 8.1 78 345-429 98-180 (253)
283 PF04548 AIG1: AIG1 family; I 99.0 1.1E-08 2.4E-13 101.9 14.3 127 299-428 2-133 (212)
284 KOG0079 GTP-binding protein H- 98.9 3.6E-09 7.8E-14 98.0 9.3 117 298-428 9-129 (198)
285 KOG0093 GTPase Rab3, small G p 98.9 1E-08 2.2E-13 95.0 11.8 122 297-429 21-144 (193)
286 KOG0070 GTP-binding ADP-ribosy 98.9 1E-08 2.2E-13 98.6 11.3 119 296-428 16-135 (181)
287 COG4917 EutP Ethanolamine util 98.9 6.2E-09 1.3E-13 94.2 8.3 105 298-427 2-106 (148)
288 PF03308 ArgK: ArgK protein; 98.9 1.4E-09 3.1E-14 110.3 4.6 27 538-564 206-232 (266)
289 TIGR00073 hypB hydrogenase acc 98.9 1.8E-08 4E-13 99.8 12.3 26 295-320 20-45 (207)
290 KOG2486 Predicted GTPase [Gene 98.9 1E-08 2.2E-13 104.3 9.8 123 296-428 135-265 (320)
291 TIGR00993 3a0901s04IAP86 chlor 98.8 4.1E-08 8.9E-13 110.6 14.9 127 298-426 119-251 (763)
292 TIGR00092 GTP-binding protein 98.8 1.6E-08 3.5E-13 108.2 11.0 89 298-387 3-109 (368)
293 KOG0097 GTPase Rab14, small G 98.8 2E-08 4.3E-13 92.4 9.9 121 297-429 11-134 (215)
294 KOG0091 GTPase Rab39, small G 98.8 3.5E-08 7.6E-13 93.0 10.2 120 298-429 9-134 (213)
295 COG2895 CysN GTPases - Sulfate 98.8 1.4E-08 3E-13 106.2 8.3 120 296-429 5-157 (431)
296 KOG0076 GTP-binding ADP-ribosy 98.8 2.1E-08 4.5E-13 95.4 8.1 122 296-429 16-144 (197)
297 KOG1491 Predicted GTP-binding 98.7 1.5E-08 3.2E-13 105.5 7.1 89 296-387 19-126 (391)
298 PTZ00099 rab6; Provisional 98.7 1.2E-07 2.6E-12 91.8 12.8 78 337-425 20-99 (176)
299 KOG0395 Ras-related GTPase [Ge 98.7 5.8E-08 1.3E-12 95.8 10.5 121 297-429 3-126 (196)
300 PF05049 IIGP: Interferon-indu 98.7 1.1E-07 2.4E-12 102.0 12.9 110 298-423 36-153 (376)
301 PRK10463 hydrogenase nickel in 98.7 9.2E-08 2E-12 99.4 11.7 25 296-320 103-127 (290)
302 KOG0468 U5 snRNP-specific prot 98.7 4.4E-08 9.6E-13 108.6 9.2 115 296-425 127-263 (971)
303 TIGR00101 ureG urease accessor 98.7 1.4E-07 3.1E-12 93.2 11.8 26 536-561 170-195 (199)
304 PF04670 Gtr1_RagA: Gtr1/RagA 98.7 6E-08 1.3E-12 98.1 8.9 126 299-429 1-129 (232)
305 KOG0460 Mitochondrial translat 98.6 7E-08 1.5E-12 100.4 8.3 120 296-429 53-188 (449)
306 COG5258 GTPBP1 GTPase [General 98.6 4E-08 8.6E-13 103.5 6.5 119 296-429 116-273 (527)
307 KOG0075 GTP-binding ADP-ribosy 98.6 1.4E-07 3.1E-12 87.6 8.9 116 298-427 21-138 (186)
308 KOG0083 GTPase Rab26/Rab37, sm 98.6 2.5E-08 5.3E-13 91.0 3.8 115 302-429 2-121 (192)
309 PF00735 Septin: Septin; Inte 98.4 6.5E-07 1.4E-11 93.2 9.5 124 298-429 5-160 (281)
310 cd04178 Nucleostemin_like Nucl 98.4 5E-07 1.1E-11 87.4 8.0 56 296-354 116-172 (172)
311 KOG3883 Ras family small GTPas 98.4 2.5E-06 5.3E-11 79.9 11.7 124 297-429 9-136 (198)
312 KOG0077 Vesicle coat complex C 98.4 8.3E-07 1.8E-11 84.2 8.0 117 297-427 20-137 (193)
313 KOG0072 GTP-binding ADP-ribosy 98.4 4.2E-07 9.1E-12 84.2 5.7 115 298-426 19-134 (182)
314 cd03112 CobW_like The function 98.4 9.9E-07 2.1E-11 84.0 8.1 69 345-423 88-158 (158)
315 TIGR03596 GTPase_YlqF ribosome 98.4 1.8E-06 3.8E-11 89.6 10.5 58 296-356 117-175 (276)
316 cd01858 NGP_1 NGP-1. Autoanti 98.4 5.4E-07 1.2E-11 85.1 6.0 54 298-354 103-157 (157)
317 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.7E-06 3.6E-11 90.3 10.1 58 296-356 120-178 (287)
318 KOG0081 GTPase Rab27, small G 98.4 9.5E-07 2.1E-11 83.0 7.1 120 299-429 11-142 (219)
319 cd01851 GBP Guanylate-binding 98.3 1E-05 2.2E-10 81.5 13.8 91 295-387 5-103 (224)
320 cd01849 YlqF_related_GTPase Yl 98.3 3E-06 6.4E-11 80.0 9.2 56 296-354 99-155 (155)
321 KOG0071 GTP-binding ADP-ribosy 98.3 5.7E-06 1.2E-10 76.5 10.5 116 298-428 18-135 (180)
322 KOG0467 Translation elongation 98.3 1.6E-06 3.5E-11 98.0 8.0 116 295-425 7-138 (887)
323 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.3E-06 2.9E-11 81.1 6.1 54 299-355 85-139 (141)
324 cd01855 YqeH YqeH. YqeH is an 98.3 8.1E-07 1.7E-11 86.5 4.7 54 298-354 128-190 (190)
325 COG0378 HypB Ni2+-binding GTPa 98.2 3.8E-06 8.2E-11 82.1 8.7 27 535-561 174-200 (202)
326 KOG4252 GTP-binding protein [S 98.2 8.5E-07 1.9E-11 84.9 3.9 120 297-429 20-142 (246)
327 KOG0074 GTP-binding ADP-ribosy 98.2 5.7E-06 1.2E-10 76.6 8.9 119 297-429 17-137 (185)
328 KOG1487 GTP-binding protein DR 98.2 8.2E-07 1.8E-11 89.6 3.5 124 296-423 58-181 (358)
329 cd01856 YlqF YlqF. Proteins o 98.2 6.1E-06 1.3E-10 79.2 9.2 55 297-354 115-170 (171)
330 PF03193 DUF258: Protein of un 98.2 2E-06 4.3E-11 82.3 5.5 59 298-357 36-100 (161)
331 KOG0393 Ras-related small GTPa 98.1 1.7E-06 3.7E-11 85.0 4.1 118 297-426 4-124 (198)
332 COG1121 ZnuC ABC-type Mn/Zn tr 98.1 3.2E-06 7E-11 86.3 6.0 102 298-411 31-134 (254)
333 COG1161 Predicted GTPases [Gen 98.1 5.5E-06 1.2E-10 87.9 7.8 57 297-356 132-189 (322)
334 PRK12288 GTPase RsgA; Reviewed 98.1 2.9E-06 6.4E-11 90.8 5.0 58 299-357 207-270 (347)
335 TIGR00157 ribosome small subun 98.1 3.1E-06 6.8E-11 86.4 4.6 55 299-357 122-184 (245)
336 COG5192 BMS1 GTP-binding prote 98.0 1.1E-05 2.3E-10 88.6 8.0 143 296-462 68-214 (1077)
337 KOG0466 Translation initiation 98.0 2.2E-06 4.7E-11 88.3 1.9 120 297-429 38-197 (466)
338 TIGR03348 VI_IcmF type VI secr 98.0 3.5E-05 7.6E-10 94.6 12.6 126 296-427 110-259 (1169)
339 KOG0410 Predicted GTP binding 98.0 1.2E-06 2.7E-11 90.9 -0.1 100 160-259 15-127 (410)
340 cd01859 MJ1464 MJ1464. This f 98.0 1.9E-05 4.1E-10 74.3 7.9 44 375-425 12-55 (156)
341 KOG1707 Predicted Ras related/ 98.0 4.4E-05 9.5E-10 84.8 11.2 121 296-429 8-133 (625)
342 TIGR03597 GTPase_YqeH ribosome 98.0 8.9E-06 1.9E-10 87.6 5.5 56 298-356 155-216 (360)
343 PRK12289 GTPase RsgA; Reviewed 98.0 1.5E-05 3.2E-10 85.5 7.1 56 299-357 174-237 (352)
344 KOG1143 Predicted translation 97.9 7.2E-06 1.6E-10 86.4 4.5 117 298-429 168-321 (591)
345 cd01858 NGP_1 NGP-1. Autoanti 97.9 2.6E-05 5.5E-10 73.7 7.8 53 370-427 3-55 (157)
346 KOG1954 Endocytosis/signaling 97.9 0.0001 2.2E-09 78.0 12.6 128 296-429 57-229 (532)
347 COG1162 Predicted GTPases [Gen 97.9 1.2E-05 2.6E-10 83.7 5.5 59 298-357 165-229 (301)
348 KOG3886 GTP-binding protein [S 97.9 8.8E-06 1.9E-10 81.1 4.0 128 298-429 5-134 (295)
349 PRK13796 GTPase YqeH; Provisio 97.9 1.2E-05 2.6E-10 86.7 4.9 55 299-356 162-222 (365)
350 PF00448 SRP54: SRP54-type pro 97.9 1.7E-05 3.7E-10 78.3 5.3 118 298-426 2-155 (196)
351 TIGR00064 ftsY signal recognit 97.9 9.6E-05 2.1E-09 76.7 11.1 71 345-426 156-232 (272)
352 COG5019 CDC3 Septin family pro 97.9 7.3E-05 1.6E-09 79.3 10.0 125 297-429 23-180 (373)
353 TIGR01425 SRP54_euk signal rec 97.8 0.00012 2.7E-09 80.2 12.0 118 297-426 100-254 (429)
354 COG1120 FepC ABC-type cobalami 97.8 7.2E-06 1.6E-10 84.0 2.2 36 298-344 29-64 (258)
355 PRK10416 signal recognition pa 97.8 4.4E-05 9.5E-10 80.9 8.2 120 296-425 113-273 (318)
356 PRK14974 cell division protein 97.8 3.4E-05 7.4E-10 82.3 7.2 70 345-425 224-293 (336)
357 cd01854 YjeQ_engC YjeQ/EngC. 97.8 2.3E-05 5E-10 81.8 5.7 56 298-356 162-225 (287)
358 cd01856 YlqF YlqF. Proteins o 97.8 5.2E-05 1.1E-09 72.7 7.4 56 361-425 5-60 (171)
359 PRK11537 putative GTP-binding 97.8 7.6E-05 1.7E-09 79.1 9.1 122 296-427 3-166 (318)
360 KOG2655 Septin family protein 97.8 0.00011 2.3E-09 78.5 10.0 125 297-429 21-176 (366)
361 PRK14722 flhF flagellar biosyn 97.8 0.0004 8.6E-09 75.1 14.2 126 298-426 138-296 (374)
362 TIGR03596 GTPase_YlqF ribosome 97.8 9.9E-05 2.1E-09 76.6 9.3 53 364-425 10-62 (276)
363 PRK00098 GTPase RsgA; Reviewed 97.8 7E-05 1.5E-09 78.6 8.1 56 298-356 165-228 (298)
364 COG0523 Putative GTPases (G3E 97.7 9E-05 2E-09 78.6 8.6 123 297-429 1-163 (323)
365 PRK09563 rbgA GTPase YlqF; Rev 97.7 9.3E-05 2E-09 77.3 8.5 53 364-425 13-65 (287)
366 KOG0463 GTP-binding protein GP 97.7 6.3E-05 1.4E-09 79.5 6.8 72 345-429 220-291 (641)
367 cd01859 MJ1464 MJ1464. This f 97.7 8.6E-05 1.9E-09 69.8 7.1 55 297-354 101-156 (156)
368 KOG0447 Dynamin-like GTP bindi 97.7 0.00099 2.1E-08 73.5 15.9 129 295-428 306-496 (980)
369 KOG1424 Predicted GTP-binding 97.7 4E-05 8.8E-10 84.0 5.3 57 297-356 314-371 (562)
370 cd03115 SRP The signal recogni 97.7 9.5E-05 2.1E-09 70.8 7.3 72 345-427 84-155 (173)
371 PF02492 cobW: CobW/HypB/UreG, 97.7 2.4E-05 5.3E-10 75.7 3.1 119 298-427 1-157 (178)
372 cd01849 YlqF_related_GTPase Yl 97.7 0.00012 2.7E-09 68.9 7.4 43 377-426 1-44 (155)
373 cd01855 YqeH YqeH. YqeH is an 97.7 0.00014 2.9E-09 70.8 7.9 25 538-562 101-125 (190)
374 PRK11889 flhF flagellar biosyn 97.6 8E-05 1.7E-09 80.6 6.6 118 297-425 241-391 (436)
375 PRK14721 flhF flagellar biosyn 97.6 0.00016 3.6E-09 79.2 8.3 119 297-426 191-341 (420)
376 COG1116 TauB ABC-type nitrate/ 97.6 0.00011 2.4E-09 74.5 6.2 36 298-344 30-65 (248)
377 PRK05703 flhF flagellar biosyn 97.6 0.00055 1.2E-08 75.4 11.9 118 298-425 222-371 (424)
378 PRK12727 flagellar biosynthesi 97.6 0.001 2.2E-08 74.6 13.9 23 297-319 350-372 (559)
379 COG4559 ABC-type hemin transpo 97.5 8.1E-05 1.7E-09 73.9 4.4 36 298-344 28-63 (259)
380 cd03114 ArgK-like The function 97.5 0.00067 1.4E-08 64.0 10.4 20 300-319 2-21 (148)
381 PRK12289 GTPase RsgA; Reviewed 97.5 0.00015 3.2E-09 77.9 6.6 48 373-426 87-135 (352)
382 TIGR00157 ribosome small subun 97.5 0.00025 5.4E-09 72.4 7.7 49 372-426 33-82 (245)
383 TIGR02475 CobW cobalamin biosy 97.5 0.00022 4.7E-09 76.4 7.6 25 296-320 3-27 (341)
384 KOG0448 Mitofusin 1 GTPase, in 97.5 0.0014 3E-08 74.3 13.9 119 297-427 109-277 (749)
385 KOG1547 Septin CDC10 and relat 97.5 0.00058 1.3E-08 68.7 9.6 123 298-429 47-202 (336)
386 PRK12724 flagellar biosynthesi 97.4 0.00058 1.3E-08 74.7 9.8 118 298-425 224-373 (432)
387 PRK01889 GTPase RsgA; Reviewed 97.4 0.00014 3E-09 78.3 4.4 24 298-321 196-219 (356)
388 PRK00098 GTPase RsgA; Reviewed 97.4 0.00029 6.3E-09 74.0 6.2 47 373-425 78-125 (298)
389 PRK12726 flagellar biosynthesi 97.3 0.00087 1.9E-08 72.4 9.5 24 296-319 205-228 (407)
390 PRK14723 flhF flagellar biosyn 97.3 0.00065 1.4E-08 79.2 9.2 120 298-426 186-338 (767)
391 COG1419 FlhF Flagellar GTP-bin 97.3 0.00046 1E-08 74.6 7.3 118 297-425 203-352 (407)
392 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0034 7.3E-08 58.7 12.3 36 298-344 27-62 (144)
393 COG3523 IcmF Type VI protein s 97.3 0.00052 1.1E-08 83.0 8.2 132 296-428 124-273 (1188)
394 KOG0469 Elongation factor 2 [T 97.3 0.00036 7.7E-09 76.2 6.1 113 296-423 18-162 (842)
395 PRK00771 signal recognition pa 97.3 0.00049 1.1E-08 75.9 7.0 70 345-425 177-246 (437)
396 cd03216 ABC_Carb_Monos_I This 97.3 0.0013 2.7E-08 62.8 8.8 36 298-344 27-62 (163)
397 PRK12723 flagellar biosynthesi 97.2 0.00067 1.5E-08 73.8 7.7 120 297-426 174-327 (388)
398 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00059 1.3E-08 71.3 6.9 48 373-426 76-124 (287)
399 KOG2485 Conserved ATP/GTP bind 97.2 0.00052 1.1E-08 71.6 6.2 61 296-357 142-209 (335)
400 KOG2743 Cobalamin synthesis pr 97.2 0.00034 7.3E-09 72.4 4.6 127 295-429 55-229 (391)
401 COG0411 LivG ABC-type branched 97.2 0.00011 2.3E-09 74.3 0.7 38 298-346 31-68 (250)
402 TIGR00959 ffh signal recogniti 97.2 0.00081 1.7E-08 74.1 7.5 69 345-424 184-252 (428)
403 COG1122 CbiO ABC-type cobalt t 97.2 0.00058 1.3E-08 69.4 5.9 93 298-408 31-130 (235)
404 PRK06731 flhF flagellar biosyn 97.1 0.0025 5.4E-08 66.2 10.0 118 297-425 75-225 (270)
405 COG0410 LivF ABC-type branched 97.1 0.00053 1.2E-08 68.9 4.8 38 298-346 30-67 (237)
406 PRK06995 flhF flagellar biosyn 97.1 0.00099 2.1E-08 74.3 7.0 23 298-320 257-279 (484)
407 cd03261 ABC_Org_Solvent_Resist 97.1 0.00065 1.4E-08 68.3 5.0 36 298-344 27-62 (235)
408 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00068 1.5E-08 67.2 4.9 36 298-344 31-66 (218)
409 TIGR00960 3a0501s02 Type II (G 97.0 0.00069 1.5E-08 67.2 4.9 36 298-344 30-65 (216)
410 COG0552 FtsY Signal recognitio 97.0 0.0014 3.1E-08 69.2 7.2 114 296-423 138-296 (340)
411 cd03225 ABC_cobalt_CbiO_domain 97.0 0.0007 1.5E-08 66.8 4.7 23 298-320 28-50 (211)
412 TIGR01166 cbiO cobalt transpor 97.0 0.00076 1.7E-08 65.6 4.9 36 298-344 19-54 (190)
413 PF00005 ABC_tran: ABC transpo 97.0 0.00063 1.4E-08 62.1 4.0 36 298-344 12-47 (137)
414 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00077 1.7E-08 66.4 4.9 36 298-344 27-62 (205)
415 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00073 1.6E-08 65.7 4.5 36 298-344 26-61 (177)
416 cd03265 ABC_DrrA DrrA is the A 97.0 0.00083 1.8E-08 66.9 5.0 23 298-320 27-49 (220)
417 PRK09536 btuD corrinoid ABC tr 97.0 0.00074 1.6E-08 73.9 5.0 23 298-320 30-52 (402)
418 smart00275 G_alpha G protein a 97.0 0.0081 1.8E-07 64.5 12.8 54 373-426 205-266 (342)
419 PRK12288 GTPase RsgA; Reviewed 97.0 0.002 4.3E-08 69.2 8.1 48 373-426 118-165 (347)
420 cd03259 ABC_Carb_Solutes_like 97.0 0.00086 1.9E-08 66.4 4.9 36 298-344 27-62 (213)
421 cd03269 ABC_putative_ATPase Th 97.0 0.0009 1.9E-08 66.1 5.0 35 298-343 27-61 (210)
422 PRK10867 signal recognition pa 97.0 0.0018 3.8E-08 71.5 7.7 69 345-424 185-253 (433)
423 PF09547 Spore_IV_A: Stage IV 97.0 0.0044 9.5E-08 67.4 10.4 40 537-584 210-249 (492)
424 COG1136 SalX ABC-type antimicr 97.0 0.00084 1.8E-08 67.7 4.7 35 298-343 32-66 (226)
425 TIGR03608 L_ocin_972_ABC putat 97.0 0.00093 2E-08 65.6 4.9 36 298-344 25-60 (206)
426 COG1135 AbcC ABC-type metal io 97.0 0.00091 2E-08 69.9 5.0 42 298-350 33-74 (339)
427 COG3840 ThiQ ABC-type thiamine 97.0 0.00082 1.8E-08 65.5 4.3 23 298-320 26-48 (231)
428 cd03264 ABC_drug_resistance_li 96.9 0.00085 1.8E-08 66.3 4.5 35 299-344 27-61 (211)
429 TIGR02673 FtsE cell division A 96.9 0.00094 2E-08 66.0 4.8 23 298-320 29-51 (214)
430 cd03258 ABC_MetN_methionine_tr 96.9 0.00096 2.1E-08 66.9 4.9 23 298-320 32-54 (233)
431 COG1131 CcmA ABC-type multidru 96.9 0.00093 2E-08 70.1 4.9 35 298-343 32-66 (293)
432 cd03292 ABC_FtsE_transporter F 96.9 0.001 2.3E-08 65.6 5.0 36 298-344 28-63 (214)
433 cd03263 ABC_subfamily_A The AB 96.9 0.00098 2.1E-08 66.2 4.8 23 298-320 29-51 (220)
434 KOG2484 GTPase [General functi 96.9 0.00073 1.6E-08 72.4 4.0 58 296-356 251-309 (435)
435 cd03293 ABC_NrtD_SsuB_transpor 96.9 0.0011 2.3E-08 66.1 5.0 23 298-320 31-53 (220)
436 cd03218 ABC_YhbG The ABC trans 96.9 0.00098 2.1E-08 66.8 4.8 23 298-320 27-49 (232)
437 cd03262 ABC_HisP_GlnQ_permease 96.9 0.00098 2.1E-08 65.8 4.7 23 298-320 27-49 (213)
438 TIGR02211 LolD_lipo_ex lipopro 96.9 0.001 2.2E-08 66.2 4.8 23 298-320 32-54 (221)
439 COG1118 CysA ABC-type sulfate/ 96.9 0.0028 6E-08 66.3 8.0 36 298-344 29-64 (345)
440 cd03229 ABC_Class3 This class 96.9 0.0011 2.5E-08 63.9 5.0 23 298-320 27-49 (178)
441 cd01857 HSR1_MMR1 HSR1/MMR1. 96.9 0.0013 2.9E-08 60.9 5.2 56 367-427 3-58 (141)
442 cd03266 ABC_NatA_sodium_export 96.9 0.0011 2.3E-08 65.8 4.9 23 298-320 32-54 (218)
443 cd03224 ABC_TM1139_LivF_branch 96.9 0.001 2.2E-08 66.2 4.7 23 298-320 27-49 (222)
444 TIGR02315 ABC_phnC phosphonate 96.9 0.001 2.2E-08 67.1 4.8 36 298-344 29-64 (243)
445 cd03257 ABC_NikE_OppD_transpor 96.9 0.001 2.2E-08 66.3 4.7 23 298-320 32-54 (228)
446 PRK10908 cell division protein 96.9 0.0012 2.7E-08 65.7 5.2 36 298-344 29-64 (222)
447 PRK11629 lolD lipoprotein tran 96.9 0.0012 2.5E-08 66.5 5.0 36 298-344 36-71 (233)
448 COG3839 MalK ABC-type sugar tr 96.9 0.00099 2.2E-08 71.0 4.7 24 298-321 30-53 (338)
449 PRK13541 cytochrome c biogenes 96.9 0.0012 2.5E-08 64.7 4.8 23 298-320 27-49 (195)
450 TIGR01189 ccmA heme ABC export 96.9 0.0012 2.6E-08 64.7 4.9 23 298-320 27-49 (198)
451 KOG4423 GTP-binding protein-li 96.9 4.3E-05 9.2E-10 74.0 -5.2 122 297-426 25-150 (229)
452 cd03296 ABC_CysA_sulfate_impor 96.9 0.0012 2.6E-08 66.7 4.9 23 298-320 29-51 (239)
453 TIGR01188 drrA daunorubicin re 96.9 0.0011 2.5E-08 69.5 5.0 23 298-320 20-42 (302)
454 PRK10584 putative ABC transpor 96.9 0.0012 2.7E-08 66.0 4.9 36 298-344 37-72 (228)
455 cd03219 ABC_Mj1267_LivG_branch 96.9 0.0011 2.4E-08 66.5 4.6 23 298-320 27-49 (236)
456 cd03235 ABC_Metallic_Cations A 96.9 0.0011 2.3E-08 65.6 4.4 35 298-343 26-60 (213)
457 KOG0096 GTPase Ran/TC4/GSP1 (n 96.9 0.0021 4.6E-08 62.7 6.1 116 297-427 10-130 (216)
458 cd03256 ABC_PhnC_transporter A 96.9 0.0012 2.6E-08 66.4 4.8 23 298-320 28-50 (241)
459 cd03268 ABC_BcrA_bacitracin_re 96.9 0.0013 2.9E-08 64.7 5.0 36 298-344 27-62 (208)
460 cd03301 ABC_MalK_N The N-termi 96.8 0.0013 2.9E-08 64.9 5.0 23 298-320 27-49 (213)
461 PRK11248 tauB taurine transpor 96.8 0.0012 2.6E-08 67.6 4.8 23 298-320 28-50 (255)
462 cd03260 ABC_PstB_phosphate_tra 96.8 0.0013 2.9E-08 65.7 4.8 23 298-320 27-49 (227)
463 TIGR03864 PQQ_ABC_ATP ABC tran 96.8 0.0014 3.1E-08 65.9 5.0 23 298-320 28-50 (236)
464 cd03215 ABC_Carb_Monos_II This 96.8 0.0014 3E-08 63.5 4.7 23 298-320 27-49 (182)
465 PRK13538 cytochrome c biogenes 96.8 0.0014 3E-08 64.6 4.7 23 298-320 28-50 (204)
466 PRK13540 cytochrome c biogenes 96.8 0.0015 3.2E-08 64.2 4.9 36 298-344 28-63 (200)
467 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0062 1.3E-07 57.3 8.9 23 298-320 26-48 (157)
468 PRK01889 GTPase RsgA; Reviewed 96.8 0.0039 8.5E-08 67.2 8.3 48 373-426 110-157 (356)
469 cd03297 ABC_ModC_molybdenum_tr 96.8 0.0015 3.2E-08 64.8 4.7 23 298-320 24-46 (214)
470 COG1134 TagH ABC-type polysacc 96.8 0.0013 2.8E-08 66.7 4.3 36 298-344 54-89 (249)
471 PRK13638 cbiO cobalt transport 96.8 0.0015 3.1E-08 67.5 4.8 23 298-320 28-50 (271)
472 TIGR01184 ntrCD nitrate transp 96.8 0.0015 3.2E-08 65.8 4.7 23 298-320 12-34 (230)
473 PRK11124 artP arginine transpo 96.8 0.0016 3.5E-08 65.8 5.0 23 298-320 29-51 (242)
474 cd03295 ABC_OpuCA_Osmoprotecti 96.8 0.0015 3.3E-08 66.0 4.8 23 298-320 28-50 (242)
475 TIGR03410 urea_trans_UrtE urea 96.8 0.0015 3.2E-08 65.5 4.6 23 298-320 27-49 (230)
476 PRK13539 cytochrome c biogenes 96.8 0.0016 3.4E-08 64.4 4.8 23 298-320 29-51 (207)
477 PRK10895 lipopolysaccharide AB 96.8 0.0015 3.3E-08 65.9 4.8 23 298-320 30-52 (241)
478 cd03230 ABC_DR_subfamily_A Thi 96.8 0.0017 3.8E-08 62.3 4.9 23 298-320 27-49 (173)
479 COG1101 PhnK ABC-type uncharac 96.8 0.0014 3.1E-08 65.4 4.3 36 298-344 33-68 (263)
480 cd03298 ABC_ThiQ_thiamine_tran 96.8 0.0016 3.5E-08 64.3 4.8 23 298-320 25-47 (211)
481 PRK15056 manganese/iron transp 96.8 0.0016 3.4E-08 67.3 4.9 36 298-344 34-69 (272)
482 cd03294 ABC_Pro_Gly_Bertaine T 96.7 0.0016 3.6E-08 67.1 4.9 23 298-320 51-73 (269)
483 PRK13641 cbiO cobalt transport 96.7 0.0016 3.4E-08 67.9 4.8 36 298-344 34-69 (287)
484 TIGR01288 nodI ATP-binding ABC 96.7 0.0016 3.6E-08 68.3 5.0 23 298-320 31-53 (303)
485 PRK13543 cytochrome c biogenes 96.7 0.0017 3.8E-08 64.5 4.9 23 298-320 38-60 (214)
486 KOG1707 Predicted Ras related/ 96.7 0.0094 2E-07 66.8 10.9 119 295-428 423-543 (625)
487 cd03251 ABCC_MsbA MsbA is an e 96.7 0.0016 3.5E-08 65.3 4.6 23 298-320 29-51 (234)
488 PRK11264 putative amino-acid A 96.7 0.0018 3.8E-08 65.7 5.0 23 298-320 30-52 (250)
489 cd03231 ABC_CcmA_heme_exporter 96.7 0.0017 3.8E-08 63.8 4.8 23 298-320 27-49 (201)
490 PRK14250 phosphate ABC transpo 96.7 0.0017 3.7E-08 65.7 4.8 36 298-344 30-65 (241)
491 PRK09493 glnQ glutamine ABC tr 96.7 0.0018 4E-08 65.2 5.0 23 298-320 28-50 (240)
492 PRK13652 cbiO cobalt transport 96.7 0.0018 3.8E-08 67.1 4.9 36 298-344 31-66 (277)
493 PRK13536 nodulation factor exp 96.7 0.0018 3.8E-08 69.4 5.0 23 298-320 68-90 (340)
494 PRK13648 cbiO cobalt transport 96.7 0.0018 3.9E-08 66.7 4.9 36 298-344 36-71 (269)
495 PRK13649 cbiO cobalt transport 96.7 0.0018 3.9E-08 67.1 4.9 36 298-344 34-69 (280)
496 PRK15112 antimicrobial peptide 96.7 0.0016 3.6E-08 67.0 4.6 36 298-344 40-75 (267)
497 PRK13646 cbiO cobalt transport 96.7 0.0017 3.7E-08 67.6 4.8 36 298-344 34-69 (286)
498 TIGR03740 galliderm_ABC gallid 96.7 0.002 4.2E-08 64.3 5.0 23 298-320 27-49 (223)
499 TIGR02770 nickel_nikD nickel i 96.7 0.0019 4.1E-08 64.8 4.9 23 298-320 13-35 (230)
500 PRK13537 nodulation ABC transp 96.7 0.0019 4.1E-08 68.1 5.0 23 298-320 34-56 (306)
No 1
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=7.3e-81 Score=652.58 Aligned_cols=319 Identities=43% Similarity=0.632 Sum_probs=292.2
Q ss_pred CCCeEEEEeeccCCCCChhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHH
Q 007599 60 DPPRLFLVQPRLKPPTFLQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIK 139 (596)
Q Consensus 60 ~~~~~~~v~~~~~~~~~~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~ 139 (596)
.+.++++|++..... ..+.+|+|+.+||+|+| | .|+..++|+ +.+|||+||||+||++||+
T Consensus 2 ~~~r~~~v~v~~~~~-~~~~~leEl~~La~tag-----~---------~v~~~~~q~----r~~pdp~~~iG~GK~eEi~ 62 (411)
T COG2262 2 KGERALLVGVSKDQD-DFEESLEELAELAETAG-----Y---------EVVEVVTQK----RERPDPKTYIGSGKLEEIA 62 (411)
T ss_pred CccceEEEEeccccc-cchhhHHHHHHHHHHcC-----C---------eEeeeEEEe----ccCCCcceecCcchHHHHH
Confidence 357889999888653 46889999999999985 3 378889997 4568999999999999999
Q ss_pred HHHhcccccCCCcEEEECCCCCHHHHHHHHHHhCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCC
Q 007599 140 CHINGAESKGELDAIFVNAILSGIQQRNLERAWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPD 219 (596)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~~Lsp~Q~~nle~~~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~ 219 (596)
..++. .+||+||||++|||+|++|||++|||+|+||++||||||++||+|+|||||||||||+|++|||++.|.++
T Consensus 63 ~~v~~----~~ad~VIf~~~LsP~Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l 138 (411)
T COG2262 63 EAVEE----TGADLVIFDHELSPSQLRNLEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHL 138 (411)
T ss_pred HHHHh----cCCCEEEECCcCCHHHHHHHHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhc
Confidence 99985 49999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCcccccCchhhhhhhccCCCCCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeE
Q 007599 220 GRLTFGETGEAEVVSARGRGSGGRGFISGAGETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLAT 299 (596)
Q Consensus 220 ~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~gE~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~ 299 (596)
+ +.| ||+|| +||||+++|.+||.|+.||.+|+++|++++++|+.+|++|.++ ++|.
T Consensus 139 --------------~--~~G-ggiG~-rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~------~~p~ 194 (411)
T COG2262 139 --------------S--RLG-GGIGF-RGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRS------GIPL 194 (411)
T ss_pred --------------c--ccc-CCCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------CCCe
Confidence 2 222 45565 5999999999999999999999999999999999999999876 8999
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
|+++||||||||||||+|++..+.+.+++|+|++|+.+.+.++++ .+++.||+|||+++|+.++++|++|++++..||+
T Consensus 195 vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDl 274 (411)
T COG2262 195 VALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADL 274 (411)
T ss_pred EEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCE
Confidence 999999999999999999999999999999999999999999976 9999999999999999999999999999999999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
++||||+|+|...++.+.+.++|.++++.. .|+|+|+||+|++.+..
T Consensus 275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~---~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 275 LLHVVDASDPEILEKLEAVEDVLAEIGADE---IPIILVLNKIDLLEDEE 321 (411)
T ss_pred EEEEeecCChhHHHHHHHHHHHHHHcCCCC---CCEEEEEecccccCchh
Confidence 999999999999999999999999999876 59999999999877543
No 2
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=1.1e-68 Score=581.22 Aligned_cols=317 Identities=36% Similarity=0.512 Sum_probs=277.7
Q ss_pred CCCCeEEEEeeccCCCCChhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHH
Q 007599 59 DDPPRLFLVQPRLKPPTFLQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETI 138 (596)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el 138 (596)
...+|++||++..+.. ..+..|+|+..||+|+|. .|+..++|+ +.+|+|+||||+||++||
T Consensus 6 ~~~~~~~l~~~~~~~~-~~~~~~~El~~L~~~~g~--------------~v~~~~~q~----~~~~~~~~~~g~gk~~e~ 66 (426)
T PRK11058 6 EAGEQAVLVHIYFSQD-KDMEDLQEFESLVSSAGV--------------EALQVITGS----RKAPHPKYFVGEGKAVEI 66 (426)
T ss_pred CCCceEEEEEecCCCC-chhhhHHHHHHHHHHCCC--------------EEEEEEEEe----cCCCCCCeeecccHHHHH
Confidence 3447999999876543 346789999999999953 388899997 346899999999999999
Q ss_pred HHHHhcccccCCCcEEEECCCCCHHHHHHHHHHhCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCC
Q 007599 139 KCHINGAESKGELDAIFVNAILSGIQQRNLERAWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGP 218 (596)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~~~~Lsp~Q~~nle~~~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~ 218 (596)
++++++ .++|+||||++|||+|+||||++||++|+|||.|||+||++||+|+|||||||||+|+|++|||.+.|.+
T Consensus 67 ~~~~~~----~~~~~vi~~~~lsp~q~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~ 142 (426)
T PRK11058 67 AEAVKA----TGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTH 142 (426)
T ss_pred HHHHHh----cCCCEEEECCCCCHHHHHHHHHHHCCeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccc
Confidence 999986 4999999999999999999999999999999999999999999999999999999999999999876644
Q ss_pred CCCcccccCchhhhhhhccCCCCCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 007599 219 DGRLTFGETGEAEVVSARGRGSGGRGFISGAGETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLA 298 (596)
Q Consensus 219 ~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~gE~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~ 298 (596)
++ +++ ||+|+ +||||+++|.+||.+..+|+.++++|+++.+++...|..|.+. +.|
T Consensus 143 l~---------------~~~--gg~g~-~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~------~~p 198 (426)
T PRK11058 143 LE---------------RQK--GGIGL-RGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKA------DVP 198 (426)
T ss_pred hh---------------hhc--CCCCC-CCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc------CCC
Confidence 32 332 45564 6999999999999999999999999999999888777665543 678
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
.|+|+|++|||||||||+|++.++.+.+.+|+|++++.+.+.+++. .+.++||||+++.+|++++++|..++.++..||
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~AD 278 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQAT 278 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999998888889999999999999998876 899999999999889999999999999999999
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 378 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 378 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
++++|+|++++....+...+.++|..++.. ..|+|+|+||+|+.+
T Consensus 279 lIL~VvDaS~~~~~e~l~~v~~iL~el~~~---~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 279 LLLHVVDAADVRVQENIEAVNTVLEEIDAH---EIPTLLVMNKIDMLD 323 (426)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHHhccC---CCCEEEEEEcccCCC
Confidence 999999999987666666677788877542 359999999999854
No 3
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=1.1e-67 Score=561.16 Aligned_cols=314 Identities=45% Similarity=0.624 Sum_probs=275.3
Q ss_pred eEEEEeeccCCCCChhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHHHHH
Q 007599 63 RLFLVQPRLKPPTFLQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHI 142 (596)
Q Consensus 63 ~~~~v~~~~~~~~~~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~~~~ 142 (596)
|++||++........+.+|+|+.+||+|+| | .|+.+++|+ +.+|+|+||||+||++||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~E~~~L~~~~~-----~---------~v~~~~~~~----~~~~~~~~~~g~gk~~e~~~~~ 62 (351)
T TIGR03156 1 RAILVGVDLPEEDDEEESLEELAELAETAG-----A---------EVVGTVTQK----RSRPDPATYIGKGKVEEIAELV 62 (351)
T ss_pred CEEEEEEecCCCcchhhhHHHHHHHHHHCC-----C---------EEEEEEEEe----cCCCCCCeEecccHHHHHHHHH
Confidence 588999876543334578999999999995 3 378889997 3468999999999999999999
Q ss_pred hcccccCCCcEEEECCCCCHHHHHHHHHHhCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCc
Q 007599 143 NGAESKGELDAIFVNAILSGIQQRNLERAWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRL 222 (596)
Q Consensus 143 ~~~~~~~~~~~v~~~~~Lsp~Q~~nle~~~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~ 222 (596)
++ .++|+||||++|||+|+||||++||++|+||++|||+||++||+|+||||||+||+|.|.+||+.+.|.+
T Consensus 63 ~~----~~~~~vi~~~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~---- 134 (351)
T TIGR03156 63 EE----LEADLVIFDHELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTH---- 134 (351)
T ss_pred Hh----cCCCEEEECCCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHH----
Confidence 85 4999999999999999999999999999999999999999999999999999999999999999765422
Q ss_pred ccccCchhhhhhhccCCCCCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEE
Q 007599 223 TFGETGEAEVVSARGRGSGGRGFISGAGETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAV 302 (596)
Q Consensus 223 ~~~~~g~~e~~~~~~~~~g~~g~~~g~gE~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaL 302 (596)
++ +.+ |++|+ +||||++++.+||.|++||..|+++|+++.+++..+|..|.+. +.+.|++
T Consensus 135 ----------l~-~~~--~~i~~-~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~------~~~~Val 194 (351)
T TIGR03156 135 ----------LS-RQG--GGIGT-RGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRA------DVPTVAL 194 (351)
T ss_pred ----------HH-hhc--CCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc------CCcEEEE
Confidence 22 222 45666 6999999999999999999999999999999999888776554 6799999
Q ss_pred EcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEE
Q 007599 303 VGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVH 381 (596)
Q Consensus 303 VG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~ 381 (596)
+|++|||||||+|+|++....+.+.+|+|++++.+.+.++++ .+.++||||+++.+|+++++.|..+++++..||++++
T Consensus 195 vG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~ 274 (351)
T TIGR03156 195 VGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLH 274 (351)
T ss_pred ECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999998877788999999999999999766 9999999999998999999999999999999999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 382 VLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 382 VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|+|++++....+...+.++|..++.. ..|+|+|+||+|+.+
T Consensus 275 VvD~s~~~~~~~~~~~~~~L~~l~~~---~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 275 VVDASDPDREEQIEAVEKVLEELGAE---DIPQLLVYNKIDLLD 315 (351)
T ss_pred EEECCCCchHHHHHHHHHHHHHhccC---CCCEEEEEEeecCCC
Confidence 99999887666666667788887643 259999999999854
No 4
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=100.00 E-value=2.2e-58 Score=466.87 Aligned_cols=399 Identities=41% Similarity=0.565 Sum_probs=316.4
Q ss_pred hhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHHHHHhcccccCCCcEEEE
Q 007599 77 LQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIFV 156 (596)
Q Consensus 77 ~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~~~~v~~ 156 (596)
.+.+++|+.+|+.+++.| .+...++.+. .+++++|||+|++++|...+.+. .++++|.
T Consensus 4 ae~qleea~aLvdtl~~~--------------nvv~t~~kpv----~~~rk~~~gsGn~e~Li~~i~aa----~at~~f~ 61 (410)
T KOG0410|consen 4 AEVQLEEANALVDTLQQR--------------NVVRTWAKPV----LDNRKTYIGSGNVEELIIEIFAA----HATTKFA 61 (410)
T ss_pred HHHHHHHHHHHHHhhccc--------------hhhhheeeec----cCCcceeeecCcHHHHHHHHhcC----ccceeee
Confidence 467899999999999855 3334455544 34789999999999999999864 6899999
Q ss_pred CC-CCCHHHHHHHHHHhCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCchhhhhhh
Q 007599 157 NA-ILSGIQQRNLERAWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSA 235 (596)
Q Consensus 157 ~~-~Lsp~Q~~nle~~~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~ 235 (596)
|. .++|.|+++++..|+++|+||+.+||+||.++|.|+||+|||.||+++|.++|+.+.|.++ .
T Consensus 62 nv~a~~a~~~~ek~r~~~VrvfDr~~~vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl---------------~ 126 (410)
T KOG0410|consen 62 NVQAELAALMYEKSRLVRVRVFDRRHTVLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHL---------------R 126 (410)
T ss_pred cccccchhHHHHHhhhcceeeecchhhHHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHH---------------H
Confidence 96 7999999999999999999999999999999999999999999999999999998875432 2
Q ss_pred ccCCCCCCCccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHH
Q 007599 236 RGRGSGGRGFISGAGETELQLQR-RRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLV 314 (596)
Q Consensus 236 ~~~~~g~~g~~~g~gE~~~e~~r-r~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLL 314 (596)
++ .|++ ..|+||.+++.+. |.++.++..++++|+.+++.| ..|.+|... ..|+|++|||||||||||+
T Consensus 127 r~--~g~~--v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr-~~r~gr~~~------s~pviavVGYTNaGKsTLi 195 (410)
T KOG0410|consen 127 RQ--SGGQ--VKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKR-QRRVGREGE------SSPVIAVVGYTNAGKSTLI 195 (410)
T ss_pred hc--CCCc--ccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccccC------CCceEEEEeecCccHHHHH
Confidence 33 3444 4699999999887 666889999999999999988 434444332 6799999999999999999
Q ss_pred HHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHH
Q 007599 315 SALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEH 393 (596)
Q Consensus 315 NaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~ 393 (596)
|+|++..+.+++++|+|+||+.+...++++ .+++.||+||++++|+.++.+|.+|++++..+|+++||+|+|+|..+.+
T Consensus 196 kaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q 275 (410)
T KOG0410|consen 196 KALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQ 275 (410)
T ss_pred HHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHH
Confidence 999999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC-cccCCcEEEEEecCCCCCcccccccccccccccccccccccCCCccccccccccCCCCCCCCCCC
Q 007599 394 RTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYHDEEMGDVEYIDGDDISNFSRAEDKDTTSEPVDVECIDNYGGDDADNND 472 (596)
Q Consensus 394 ~~~v~~iL~~lgi~-~~~~~PiIvVlNKiDlv~~~~~~~~~~~~~~~~~~~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~ 472 (596)
.+.+..+|.++|+. ......+|-|.||+|......- . ......-.+++.++|..+++....-...+... ..
T Consensus 276 ~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-~----E~n~~v~isaltgdgl~el~~a~~~kv~~~t~--~~- 347 (410)
T KOG0410|consen 276 RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-E----EKNLDVGISALTGDGLEELLKAEETKVASETT--VD- 347 (410)
T ss_pred HHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-c----ccCCccccccccCccHHHHHHHHHHHhhhhhe--ee-
Confidence 99999999999995 4445578999999998765432 1 11124667888888888873221100000000 00
Q ss_pred CCCccchhhhhhccccccchhhhccCCCCCCchhhhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHH
Q 007599 473 GFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQE 552 (596)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~e 552 (596)
+..+.....+...+|+..++ -+|.+-++++-|
T Consensus 348 -------e~~Lr~d~gd~~~~wly~e~--------------------------------------~vvk~~~i~eng--- 379 (410)
T KOG0410|consen 348 -------EDQLRNDDGDDADGWLYSED--------------------------------------EVVKVDAINENG--- 379 (410)
T ss_pred -------eEEeecCCCccchhheeecc--------------------------------------eEEEeeccCCCC---
Confidence 01111122333344443222 278888999999
Q ss_pred HHHHHHHHHhhcccccCCCCcccccc-cccccCCCCCCCCc
Q 007599 553 LLEIIDERLKTLDDKQKSPNVVERDF-FNKKWRPPRTEDSS 592 (596)
Q Consensus 553 Ll~~I~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 592 (596)
++.+...+++++- -..+|+||+.++++
T Consensus 380 -------------~~l~~~vi~~~SelgKfrk~f~~~~~~~ 407 (410)
T KOG0410|consen 380 -------------KKLKSPVIVERSELGKFRKRFPRNDDEE 407 (410)
T ss_pred -------------ceEecceeecHHhhcchhhhCCCCcchh
Confidence 4455567777775 78899999998865
No 5
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=99.94 E-value=5.7e-27 Score=203.02 Aligned_cols=90 Identities=40% Similarity=0.507 Sum_probs=82.9
Q ss_pred hhhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHHHHHhcccccCCCcEEEE
Q 007599 77 LQAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIFV 156 (596)
Q Consensus 77 ~~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~~~~v~~ 156 (596)
.+++|+|+.+||+|+| | .|++.++|+ +++|+|+||||+||++||+++++. .++|+|||
T Consensus 6 ~~~~l~El~~L~~t~g-----~---------~vv~~~~q~----~~~~~p~~~iG~GK~eei~~~~~~----~~~d~vvf 63 (95)
T PF13167_consen 6 FEESLEELEELAETAG-----Y---------EVVGTVVQK----RRKPDPKTYIGSGKVEEIKELIEE----LDADLVVF 63 (95)
T ss_pred HHHHHHHHHHHHHHCC-----C---------eEEEEEEec----CCCCCcceeechhHHHHHHHHHhh----cCCCEEEE
Confidence 5789999999999985 3 378899997 457999999999999999999975 59999999
Q ss_pred CCCCCHHHHHHHHHHhCCCccchhHHHHHHHH
Q 007599 157 NAILSGIQQRNLERAWGKPVLDRVGLIIEIFN 188 (596)
Q Consensus 157 ~~~Lsp~Q~~nle~~~~~~v~DR~~lIL~IF~ 188 (596)
|++|||+|+||||++||++|+||+.|||+|||
T Consensus 64 d~~Lsp~Q~rNLe~~~~~~V~DRt~LIL~IFA 95 (95)
T PF13167_consen 64 DNELSPSQQRNLEKALGVKVIDRTQLILEIFA 95 (95)
T ss_pred CCCCCHHHHHHHHHHHCCeeeccccHHHHHcC
Confidence 99999999999999999999999999999997
No 6
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=8.3e-25 Score=214.33 Aligned_cols=167 Identities=54% Similarity=0.828 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccc
Q 007599 251 ETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFA 330 (596)
Q Consensus 251 E~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~ 330 (596)
||++|.+++.++++++.++++|+.+.+++...+..|.++ +.++|+|+|++|||||||+|+|++......+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~ 74 (204)
T cd01878 1 ETQLETDRRLIRERIAKLRRELEKVKKQRELQRRRRKRS------GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFA 74 (204)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc------CCCeEEEECCCCCCHHHHHHHHhcchhccCCccce
Confidence 689999999999999999999999999987777655433 67999999999999999999999987777777888
Q ss_pred eecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcc
Q 007599 331 TLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEE 409 (596)
Q Consensus 331 Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~ 409 (596)
|.++....+.+.+. .+.+|||||+....+......+..++..+..+|++++|+|++++........+.+++..++..
T Consensus 75 t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~-- 152 (204)
T cd01878 75 TLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE-- 152 (204)
T ss_pred eccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--
Confidence 99988888888776 899999999987666666666776776778899999999999876555555666777776543
Q ss_pred cCCcEEEEEecCCCCCc
Q 007599 410 KLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 410 ~~~PiIvVlNKiDlv~~ 426 (596)
..|+++|+||+|+.+.
T Consensus 153 -~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 153 -DIPMILVLNKIDLLDD 168 (204)
T ss_pred -CCCEEEEEEccccCCh
Confidence 2599999999998654
No 7
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.93 E-value=9.4e-26 Score=232.17 Aligned_cols=241 Identities=17% Similarity=0.126 Sum_probs=180.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC------------------cccccccceecCeeEEEEECCceeEeeeccceeeccch
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL------------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL 360 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v------------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~ 360 (596)
+|+++|++|||||||+++|+.... ..+...+.|++.....+.+.+.++.++||||+..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 489999999999999999963210 12335567788888888887779999999998642
Q ss_pred hhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccccc-
Q 007599 361 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDGDD- 438 (596)
Q Consensus 361 ~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~~~- 438 (596)
.......+..+|++++|+|+..+. ..+...+++.+...++ |+|+|+||+|+.+.+... .+.+...+
T Consensus 78 -----~~~~~~~l~~aD~ailVVDa~~g~-~~~t~~~~~~~~~~~~------p~ivviNK~D~~~a~~~~~~~~l~~~l~ 145 (270)
T cd01886 78 -----TIEVERSLRVLDGAVAVFDAVAGV-EPQTETVWRQADRYNV------PRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred -----HHHHHHHHHHcCEEEEEEECCCCC-CHHHHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 122344566799999999998864 4455666677776664 899999999998653210 11221111
Q ss_pred -----cccccc-ccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhhccc
Q 007599 439 -----ISNFSR-AEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAA 512 (596)
Q Consensus 439 -----~~~~~s-a~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~~~~ 512 (596)
.....+ .....|+.++++++++.|....+.......+|.++.+.+.+.++++++.+. +.|+++| ++|++++
T Consensus 146 ~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~va-e~dd~L~--e~yl~~~ 222 (270)
T cd01886 146 ANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLA-EFDDELM--EKYLEGE 222 (270)
T ss_pred CCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh-cCCHHHH--HHHhCCC
Confidence 111122 235788999999999877332233233345677778888889999999886 6788888 9999999
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHH
Q 007599 513 EDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERL 561 (596)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~ 561 (596)
+++.+++..++++++..|.++| |+++||.+|.|++.||+.|...+
T Consensus 223 ~~~~~el~~~l~~~~~~~~~~P----V~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 223 EITEEEIKAAIRKGTIANKIVP----VLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred CCCHHHHHHHHHHHHHcCcEEE----EEeCcCCCCcCHHHHHHHHHHhc
Confidence 9999999999999999999999 99999999999999999998754
No 8
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=2.2e-24 Score=236.78 Aligned_cols=216 Identities=25% Similarity=0.253 Sum_probs=163.3
Q ss_pred hCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCch
Q 007599 172 WGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAGE 251 (596)
Q Consensus 172 ~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~gE 251 (596)
.|+-.+.+++.|.++.. ...+..+|++|++|.|.+++++..|.. +++.....-...+ .+|+|
T Consensus 117 ngk~dL~qaEai~~li~---a~t~~~~~~al~~l~G~l~~~~~~~r~------------~l~~~~a~iea~i---Df~ee 178 (449)
T PRK05291 117 NGKLDLTQAEAIADLID---AKTEAAARLALRQLQGALSKLINELRE------------ELLELLALVEAAI---DFPEE 178 (449)
T ss_pred cCCcCHHHHHHHHHHHh---CCCHHHHHHHHHhcCcHHHHHHHHHHH------------HHHHHHHHheEEc---cCCCC
Confidence 48999999999999998 445678899999999999998765421 1111111111123 36888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccc
Q 007599 252 TELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFA 330 (596)
Q Consensus 252 ~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~ 330 (596)
...+.+++.+..++..++++|+++.+++...+. .+ ..++|+++|++|||||||+|+|++.+. .+.+.+++
T Consensus 179 ~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~--~~-------~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gt 249 (449)
T PRK05291 179 DIEFLSDEKILEKLEELIAELEALLASARQGEI--LR-------EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGT 249 (449)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-------cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc
Confidence 878899999999999999999999887754332 22 237899999999999999999999775 46778899
Q ss_pred eecCeeEEEEECCceeEeeeccceeeccchhhHHH--HHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc
Q 007599 331 TLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDA--FHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE 408 (596)
Q Consensus 331 Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~a--f~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~ 408 (596)
|.+.....+.+.+..+.++||||+.. +.+.++. +..++..+..+|++++|+|++++...... .++..
T Consensus 250 T~d~~~~~i~~~g~~i~l~DT~G~~~--~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~----~~l~~----- 318 (449)
T PRK05291 250 TRDVIEEHINLDGIPLRLIDTAGIRE--TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD----EILEE----- 318 (449)
T ss_pred ccccEEEEEEECCeEEEEEeCCCCCC--CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH----HHHHh-----
Confidence 99998888888666999999999864 4455444 45677888999999999999887544332 22222
Q ss_pred ccCCcEEEEEecCCCCC
Q 007599 409 EKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 409 ~~~~PiIvVlNKiDlv~ 425 (596)
....|+++|+||+|+.+
T Consensus 319 ~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 319 LKDKPVIVVLNKADLTG 335 (449)
T ss_pred cCCCCcEEEEEhhhccc
Confidence 12359999999999864
No 9
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.88 E-value=1.1e-22 Score=208.85 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=165.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCccc------------------ccccceecCeeEEEEECCceeEeeeccceeeccch
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSD------------------ARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL 360 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~------------------~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~ 360 (596)
+|+++|++|||||||+|+|++....+. ...+.|+......+.+.+..+.++||||+..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 489999999999999999975321100 01234455555666665558999999998532
Q ss_pred hhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccccc-
Q 007599 361 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDGDD- 438 (596)
Q Consensus 361 ~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~~~- 438 (596)
...+...+..+|.+++|+|++.+. ..+...+++.+...++ |+++|+||+|+....... .+.+...+
T Consensus 78 -----~~~~~~~l~~aD~~i~Vvd~~~g~-~~~~~~~~~~~~~~~~------p~iivvNK~D~~~~~~~~~~~~l~~~~~ 145 (268)
T cd04170 78 -----VGETRAALRAADAALVVVSAQSGV-EVGTEKLWEFADEAGI------PRIIFINKMDRERADFDKTLAALQEAFG 145 (268)
T ss_pred -----HHHHHHHHHHCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCC------CEEEEEECCccCCCCHHHHHHHHHHHhC
Confidence 123344566799999999998864 3344455566666554 899999999998754210 12221111
Q ss_pred ---cccccccc---ccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhhccc
Q 007599 439 ---ISNFSRAE---DKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAA 512 (596)
Q Consensus 439 ---~~~~~sa~---~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~~~~ 512 (596)
.....+.. ...|+.+++....+.+.. +........|.++.......+.++++.+. +.|+++| ++|++++
T Consensus 146 ~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~e~~a-~~dd~l~--e~yl~~~ 220 (268)
T cd04170 146 RPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSP--GAPSEEIEIPEELKEEVAEAREELLEAVA-ETDDELM--EKYLEGG 220 (268)
T ss_pred CCeEEEEecccCCCceeEEEEcccCEEEEccC--CCcceeccCCHHHHHHHHHHHHHHHHHHh-hCCHHHH--HHHhCCC
Confidence 11222233 244566666666665522 11122233556666667777888888764 7777888 9999999
Q ss_pred cCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHH
Q 007599 513 EDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERL 561 (596)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~ 561 (596)
+++.+++..++++++..|.++| |+++||.+|.|+++||++|.+.+
T Consensus 221 ~~~~~~l~~~l~~~~~~~~~~p----v~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 221 ELTEEELHAGLRRALRAGLLVP----VLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred CCCHHHHHHHHHHHHHhCCEEE----EEEeeCCCCcCHHHHHHHHHHhC
Confidence 9999999999999999999999 99999999999999999998754
No 10
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.88 E-value=1.2e-22 Score=205.35 Aligned_cols=215 Identities=18% Similarity=0.186 Sum_probs=148.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcc------------------cccccceecCeeEEEEECCceeEeeeccceeeccch
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFS------------------DARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL 360 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~------------------~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~ 360 (596)
+|+++|+.|+|||||+++|+.....+ +.....|+......+.+.+.++.++||||+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 48999999999999999998642110 1122334445556666666699999999997531
Q ss_pred hhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-ccccccccc
Q 007599 361 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDGDDI 439 (596)
Q Consensus 361 ~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~~~~ 439 (596)
..+...+..+|.+++|+|++++. ..+...+++.+...++ |+++|+||+|+...+... .+++...+.
T Consensus 79 ------~~~~~~l~~aD~~IlVvd~~~g~-~~~~~~~~~~~~~~~~------P~iivvNK~D~~~a~~~~~~~~i~~~~~ 145 (237)
T cd04168 79 ------AEVERSLSVLDGAILVISAVEGV-QAQTRILWRLLRKLNI------PTIIFVNKIDRAGADLEKVYQEIKEKLS 145 (237)
T ss_pred ------HHHHHHHHHhCeEEEEEeCCCCC-CHHHHHHHHHHHHcCC------CEEEEEECccccCCCHHHHHHHHHHHHC
Confidence 22334556799999999999864 4556667777776654 899999999998654220 222222221
Q ss_pred cccccccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhhccccCCCccc
Q 007599 440 SNFSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQPES 519 (596)
Q Consensus 440 ~~~~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~~~~~~~~~~~ 519 (596)
....+.+.. ++... . .......+++++.+. +.|+++| ++|+++++++++++
T Consensus 146 ~~~~~~~~p-~~~~~-------~------------------~~~~~~~~~l~e~va-e~dd~l~--e~yl~~~~~~~~el 196 (237)
T cd04168 146 SDIVPMQKV-GLAPN-------I------------------CETNEIDDEFWETLA-EGDDELL--EKYLEGGPIEELEL 196 (237)
T ss_pred CCeEEEECC-cEeee-------e------------------eeeeeccHHHHHHHh-cCCHHHH--HHHhCCCCCCHHHH
Confidence 111111110 00000 0 011123355666554 6777888 99999999999999
Q ss_pred chhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHH
Q 007599 520 TKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERL 561 (596)
Q Consensus 520 ~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~ 561 (596)
.+++++++..|+++| |+++||.++.|++.||+.|.+.+
T Consensus 197 ~~~l~~~~~~~~~~P----v~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 197 DNELSARIAKRKVFP----VYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred HHHHHHHHHhCCeEE----EEEccccCCcCHHHHHHHHHHhc
Confidence 999999999999999 99999999999999999998754
No 11
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.87 E-value=1.5e-21 Score=200.86 Aligned_cols=231 Identities=16% Similarity=0.050 Sum_probs=152.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCccc----------------------ccccceecCeeEEEEECCceeEeeecccee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSD----------------------ARLFATLDPRLKSVVLPSGKVLLSDTVGFI 355 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~----------------------~~~f~Tld~t~~~i~l~~~~i~liDTpG~i 355 (596)
++|+|+|++|||||||+++|+.....+. .....|+......+.+.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5899999999999999999985321110 011223333444566655599999999986
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYI 434 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~ 434 (596)
.+. ..+...+..+|.+++|+|++.+. ..+...+++.+...++ |+++|+||+|+....... .+.+
T Consensus 83 df~--------~~~~~~l~~aD~~IlVvda~~g~-~~~~~~i~~~~~~~~~------P~iivvNK~D~~~a~~~~~~~~l 147 (267)
T cd04169 83 DFS--------EDTYRTLTAVDSAVMVIDAAKGV-EPQTRKLFEVCRLRGI------PIITFINKLDREGRDPLELLDEI 147 (267)
T ss_pred HHH--------HHHHHHHHHCCEEEEEEECCCCc-cHHHHHHHHHHHhcCC------CEEEEEECCccCCCCHHHHHHHH
Confidence 431 12344566799999999998763 4455556666655543 899999999987664310 1122
Q ss_pred cccc----ccccc---cccccCCCccccccccccCCCCCCC-CCCCCCCccchhhhhhccccccchhhhccCCCCCCchh
Q 007599 435 DGDD----ISNFS---RAEDKDTTSEPVDVECIDNYGGDDA-DNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEE 506 (596)
Q Consensus 435 ~~~~----~~~~~---sa~~~~gi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~ 506 (596)
...+ ..... ......|+.++++++++.|....+. ......+|.++.+. +.+.+++++ +
T Consensus 148 ~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~------------~~e~~~~l~--e 213 (267)
T cd04169 148 EEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPK------------LDELGGDLA--E 213 (267)
T ss_pred HHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHH------------HHhcCHHHH--H
Confidence 1111 11112 2334678889988888877322122 12222223333322 234455555 7
Q ss_pred hhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHH
Q 007599 507 EFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERL 561 (596)
Q Consensus 507 ~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~ 561 (596)
+|+++.++..++....+++++..+.++| |+++||.+|.|++.||++|...+
T Consensus 214 ~~~e~~~~~~~~~~~~~~~~~~~~~~~P----v~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 214 QLREELELLEGAGPEFDQEAFLAGELTP----VFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred HHhCCCccchhhhHHHhHHHHHcCCEEE----EEecccccCcCHHHHHHHHHHHC
Confidence 7888888888888888999999999999 99999999999999999998754
No 12
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.87 E-value=6.1e-23 Score=205.30 Aligned_cols=205 Identities=21% Similarity=0.307 Sum_probs=147.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccc-cccceecCeeEEEEECCc------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDA-RLFATLDPRLKSVVLPSG------------------------------ 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~-~~f~Tld~t~~~i~l~~~------------------------------ 344 (596)
..++|.++|+.|+||||++++|...-..... .-...+||.+..+.++-+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNL 97 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNL 97 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHH
Confidence 4578999999999999999999763211111 111223443332222111
Q ss_pred -------------------eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcC
Q 007599 345 -------------------KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVG 405 (596)
Q Consensus 345 -------------------~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lg 405 (596)
+..++||||+|+.+.|...+++...........++++|+|..+ .......+.++|..+.
T Consensus 98 F~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~r--s~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 98 FATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPR--STSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCc--CCCchhHHHHHHHHHH
Confidence 3569999999998888766665443334455788999999855 3456778899999999
Q ss_pred CCcccCCcEEEEEecCCCCCcccccccccccccccccccccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhc
Q 007599 406 VSEEKLKNMIEVWNKIDYHDEEMGDVEYIDGDDISNFSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNK 485 (596)
Q Consensus 406 i~~~~~~PiIvVlNKiDlv~~~~~~~~~~~~~~~~~~~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (596)
+..+...|+|+|+||+|+.+...+ .+|+..|..++.. +.+
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa------~eWm~DfE~FqeA----------------------------------l~~ 215 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFA------LEWMTDFEAFQEA----------------------------------LNE 215 (366)
T ss_pred HHHhccCCeEEEEecccccccHHH------HHHHHHHHHHHHH----------------------------------HHh
Confidence 988888999999999999998877 7777777665443 222
Q ss_pred cccccchhhhccCCCCCCchhhhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhhcc
Q 007599 486 NHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKTLD 565 (596)
Q Consensus 486 ~~~~~~e~~~~e~d~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~~~ 565 (596)
....+.+... .++.++ .++||++.+ .|+|||+||.|+++++.+|+++++||+
T Consensus 216 ~~~~y~s~l~--~SmSL~-leeFY~~lr-------------------------tv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 216 AESSYMSNLT--RSMSLM-LEEFYRSLR-------------------------TVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred hccchhHHhh--hhHHHH-HHHHHhhCc-------------------------eEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 2333444443 445566 789997655 999999999999999999999999998
Q ss_pred cccCC
Q 007599 566 DKQKS 570 (596)
Q Consensus 566 ~~~~~ 570 (596)
+.|++
T Consensus 268 ~~ykp 272 (366)
T KOG1532|consen 268 EEYKP 272 (366)
T ss_pred HHhhh
Confidence 88876
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=3.5e-21 Score=182.45 Aligned_cols=120 Identities=26% Similarity=0.274 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
.||++|.||+|||||||+|+|....+.+.+++|.+...+.+.+.+..+.++||||..+-.+....+............|+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ 81 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDL 81 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCE
Confidence 69999999999999999999999889999999999999999998889999999998765444433444333333457999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+++|+|+++ .+.... +...|.++|+ |+|+|+||+|+....
T Consensus 82 ii~VvDa~~--l~r~l~-l~~ql~e~g~------P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 82 IIVVVDATN--LERNLY-LTLQLLELGI------PVVVVLNKMDEAERK 121 (156)
T ss_dssp EEEEEEGGG--HHHHHH-HHHHHHHTTS------SEEEEEETHHHHHHT
T ss_pred EEEECCCCC--HHHHHH-HHHHHHHcCC------CEEEEEeCHHHHHHc
Confidence 999999986 344443 4445556775 999999999986643
No 14
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=2e-19 Score=192.95 Aligned_cols=221 Identities=26% Similarity=0.233 Sum_probs=147.8
Q ss_pred hCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCch
Q 007599 172 WGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAGE 251 (596)
Q Consensus 172 ~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~gE 251 (596)
.|+-++.+++.|.|+..+ +| +....+.+.+|.-.++.+...|... .+...++.|+ .++ .|-|
T Consensus 119 NgK~DLtqAEai~dLI~A--~t-e~a~r~A~~~l~G~ls~~i~~lr~~-li~~~a~vEa-----------~ID---fpee 180 (454)
T COG0486 119 NGKLDLTQAEAIADLIDA--KT-EQAARIALRQLQGALSQLINELREA-LLELLAQVEA-----------NID---FPEE 180 (454)
T ss_pred cCCccHHHHHHHHHHHhC--CC-HHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHHheE-----------eCC---CCcc
Confidence 389999999999999973 33 4444566777766666654332110 0111111121 233 3544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccc
Q 007599 252 TELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFA 330 (596)
Q Consensus 252 ~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~ 330 (596)
..-+.....+..++..++++|+++...-. +....+ .-..++|+|.||+|||||+|+|++.+. .+.+.+++
T Consensus 181 di~~~~~~~i~~~l~~~~~~l~~ll~~~~--~g~ilr-------~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT 251 (454)
T COG0486 181 DIEELVLEKIREKLEELIAELDELLATAK--QGKILR-------EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT 251 (454)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhh--hhhhhh-------cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC
Confidence 12234445566666777777777655422 222222 236899999999999999999999885 56788999
Q ss_pred eecCeeEEEEECCceeEeeeccceeeccchhhHHH--HHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc
Q 007599 331 TLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDA--FHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE 408 (596)
Q Consensus 331 Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~a--f~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~ 408 (596)
|.|.-...+.+.+-++.++||+|+.. ..+.++. ...+...+..||++++|+|++.+........+ . ..
T Consensus 252 TRDviee~i~i~G~pv~l~DTAGiRe--t~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~----~----~~ 321 (454)
T COG0486 252 TRDVIEEDINLNGIPVRLVDTAGIRE--TDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALI----E----LL 321 (454)
T ss_pred ccceEEEEEEECCEEEEEEecCCccc--CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHH----H----hc
Confidence 99998889999777999999999974 3455655 46678889999999999999986333333222 1 11
Q ss_pred ccCCcEEEEEecCCCCCcccc
Q 007599 409 EKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 409 ~~~~PiIvVlNKiDlv~~~~~ 429 (596)
...+|+++|+||+|+......
T Consensus 322 ~~~~~~i~v~NK~DL~~~~~~ 342 (454)
T COG0486 322 PKKKPIIVVLNKADLVSKIEL 342 (454)
T ss_pred ccCCCEEEEEechhccccccc
Confidence 233589999999999876443
No 15
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2.3e-19 Score=190.12 Aligned_cols=129 Identities=34% Similarity=0.367 Sum_probs=97.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
-++-|+|||++|||||||||+|++....+.+++|+|+.|..+.+.+.+. .+.++||||++...... ..-....+..+.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~-~gLg~~flrhie 235 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG-AGLGHRFLKHIE 235 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc-ccHHHHHHHHhh
Confidence 3578999999999999999999998888889999999999999988655 89999999998643221 111223456677
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+++++||+|+++....+....+.+.|....- ....+|+|+|+||+|+.+.
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~-~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP-ELADKPRILVLNKIDLLDE 286 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh-hcccCCeEEEEECcccCCc
Confidence 89999999999876444444555555554421 1124699999999998654
No 16
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.82 E-value=5.7e-20 Score=211.89 Aligned_cols=246 Identities=17% Similarity=0.083 Sum_probs=166.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc------c------------cccccceecCeeEEEEECCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF------S------------DARLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~------~------------~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
++++|+|+|++|+|||||+|+|+..... . +...+.|++.....+.+.+..+.++||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 5789999999999999999999743211 1 113566777777888887679999999999753
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 436 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~ 436 (596)
. ......+..+|++++|+|+..+. ..+...++..+...++ |+|+|+||+|+...+... .+.+..
T Consensus 89 ~--------~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~------p~ivviNK~D~~~~~~~~~~~~i~~ 153 (689)
T TIGR00484 89 T--------VEVERSLRVLDGAVAVLDAVGGV-QPQSETVWRQANRYEV------PRIAFVNKMDKTGANFLRVVNQIKQ 153 (689)
T ss_pred h--------HHHHHHHHHhCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHHH
Confidence 2 12334456689999999998864 3444556666666554 899999999998654110 112211
Q ss_pred ccc------ccccccc-ccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhh
Q 007599 437 DDI------SNFSRAE-DKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFW 509 (596)
Q Consensus 437 ~~~------~~~~sa~-~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~ 509 (596)
.+. ....++. ...|+.++......-+...........+.+.++.+.+...+..+.+.+. +.|++++ ++|+
T Consensus 154 ~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~-e~dd~ll--e~yl 230 (689)
T TIGR00484 154 RLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVA-EFDEELM--EKYL 230 (689)
T ss_pred HhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHH-hcCHHHH--HHHh
Confidence 110 0111111 1233444444333322211111222223444555566667777777665 6666777 8899
Q ss_pred ccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 510 NAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
++.+++.+++.+.+++++..+.++| |+++||.+|.|++.||++|-..+-.
T Consensus 231 e~~~~~~~~l~~~l~~~~~~~~~~P----V~~gSa~~~~Gv~~LLd~I~~~lPs 280 (689)
T TIGR00484 231 EGEELTIEEIKNAIRKGVLNCEFFP----VLCGSAFKNKGVQLLLDAVVDYLPS 280 (689)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEE----EEeccccCCccHHHHHHHHHHHCCC
Confidence 9999999999999999999999999 9999999999999999999987654
No 17
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=2.6e-19 Score=191.71 Aligned_cols=121 Identities=26% Similarity=0.280 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~~ 375 (596)
|+|||||.||+|||||||+|+|... .+++.+++|.|...+...+.+..+.++||.|+....+..+.... ..++.++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999875 57899999999999999998889999999999854434444433 568888899
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
||++++|+|...+... ..+.+.++|...+ +|+|+|+||+|-..
T Consensus 84 ADvilfvVD~~~Git~-~D~~ia~~Lr~~~------kpviLvvNK~D~~~ 126 (444)
T COG1160 84 ADVILFVVDGREGITP-ADEEIAKILRRSK------KPVILVVNKIDNLK 126 (444)
T ss_pred CCEEEEEEeCCCCCCH-HHHHHHHHHHhcC------CCEEEEEEcccCch
Confidence 9999999999887544 4455667776443 49999999999763
No 18
>PRK00007 elongation factor G; Reviewed
Probab=99.81 E-value=9.4e-20 Score=210.09 Aligned_cols=246 Identities=18% Similarity=0.116 Sum_probs=168.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC---c---------------ccccccceecCeeEEEEECCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL---F---------------SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v---~---------------~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
++++|+|+|++|+|||||+|+|+.... . .+...+.|++.....+.+.+..+.++||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 578999999999999999999973210 0 1135667888888888887779999999998643
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 436 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~ 436 (596)
. ..+...+..+|++++|+|+..+. ..+...++..+...++ |+|+|+||+|+..++... .+.+..
T Consensus 89 -----~---~ev~~al~~~D~~vlVvda~~g~-~~qt~~~~~~~~~~~~------p~iv~vNK~D~~~~~~~~~~~~i~~ 153 (693)
T PRK00007 89 -----T---IEVERSLRVLDGAVAVFDAVGGV-EPQSETVWRQADKYKV------PRIAFVNKMDRTGADFYRVVEQIKD 153 (693)
T ss_pred -----H---HHHHHHHHHcCEEEEEEECCCCc-chhhHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHHH
Confidence 1 12445566799999999998773 5566667777877775 889999999998754221 111111
Q ss_pred cc------ccccccccc-cCCCccccccccccCCCC-CCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhh
Q 007599 437 DD------ISNFSRAED-KDTTSEPVDVECIDNYGG-DDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEF 508 (596)
Q Consensus 437 ~~------~~~~~sa~~-~~gi~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y 508 (596)
.+ .....++.. ..|+.++.......+... .+........+....+.+...+..+++.+. +.|++++ ++|
T Consensus 154 ~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~-e~dd~ll--e~y 230 (693)
T PRK00007 154 RLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAA-EADEELM--EKY 230 (693)
T ss_pred HhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHH-ccCHHHH--HHH
Confidence 11 111222332 244556655444443211 111111112233334444455666666665 5566666 889
Q ss_pred hccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 509 WNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+++.+++.+++...+++++..+.++| |+++||.+|.|+..||++|.+.+-.
T Consensus 231 le~~~l~~~~l~~~l~~~~~~~~~~P----v~~gSa~~~~Gv~~LLd~I~~~lPs 281 (693)
T PRK00007 231 LEGEELTEEEIKAALRKATIANEIVP----VLCGSAFKNKGVQPLLDAVVDYLPS 281 (693)
T ss_pred hCcCCCCHHHHHHHHHHHHhcCcEEE----EEecccccCcCHHHHHHHHHHHCCC
Confidence 99999999999999999999999999 9999999999999999999987653
No 19
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=3.9e-19 Score=181.46 Aligned_cols=125 Identities=24% Similarity=0.277 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc-cccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~ 373 (596)
....||++|.||+|||||+|+|.|..+.+ ++.+.+|.....+-+...+.+++++||||+... .+.+.... +.....+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p-k~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP-KHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc-chHHHHHHHHHHHHHh
Confidence 34689999999999999999999999865 455555555555555544449999999999764 23332222 3455667
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
..+|++++|+|+.++. ....+.+.+.|.... .|+|+++||+|+.....
T Consensus 84 ~dvDlilfvvd~~~~~-~~~d~~il~~lk~~~------~pvil~iNKID~~~~~~ 131 (298)
T COG1159 84 KDVDLILFVVDADEGW-GPGDEFILEQLKKTK------TPVILVVNKIDKVKPKT 131 (298)
T ss_pred ccCcEEEEEEeccccC-CccHHHHHHHHhhcC------CCeEEEEEccccCCcHH
Confidence 7799999999999863 345566666666633 39999999999988655
No 20
>PRK12739 elongation factor G; Reviewed
Probab=99.80 E-value=2.5e-19 Score=206.66 Aligned_cols=246 Identities=17% Similarity=0.107 Sum_probs=165.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC------------------cccccccceecCeeEEEEECCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL------------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v------------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
.+++|+|+|+.|+|||||+++|+.... ..+...+.|++.....+.+.+..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 578999999999999999999975311 01135677888888888887669999999998642
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 436 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~ 436 (596)
...+...+..+|++++|+|+..+. ..+...++..+...++ |+|+++||+|+...+... .+++..
T Consensus 87 --------~~e~~~al~~~D~~ilVvDa~~g~-~~qt~~i~~~~~~~~~------p~iv~iNK~D~~~~~~~~~~~~i~~ 151 (691)
T PRK12739 87 --------TIEVERSLRVLDGAVAVFDAVSGV-EPQSETVWRQADKYGV------PRIVFVNKMDRIGADFFRSVEQIKD 151 (691)
T ss_pred --------HHHHHHHHHHhCeEEEEEeCCCCC-CHHHHHHHHHHHHcCC------CEEEEEECCCCCCCCHHHHHHHHHH
Confidence 123455566799999999998874 4555666677776664 899999999998654210 111111
Q ss_pred ccc------cccccc-cccCCCccccccccccCCCC-CCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhh
Q 007599 437 DDI------SNFSRA-EDKDTTSEPVDVECIDNYGG-DDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEF 508 (596)
Q Consensus 437 ~~~------~~~~sa-~~~~gi~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y 508 (596)
.+. ....++ ....|+.++.+...+.+... .+........+..+.+.+...+..+.+.+. +.|+.++ ++|
T Consensus 152 ~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~-e~dd~ll--e~y 228 (691)
T PRK12739 152 RLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVA-EVDEELM--EKY 228 (691)
T ss_pred HhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhh-hcCHHHH--HHH
Confidence 110 001111 12334445544444433221 111111112233344444445555666554 4555666 889
Q ss_pred hccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 509 WNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+++.+++.+++...+.+++..+.++| |+++||.+|.|+..||++|...+-.
T Consensus 229 l~~~~~~~~~l~~~l~~~~~~~~~~P----v~~gSa~~~~Gv~~LLd~I~~~lPs 279 (691)
T PRK12739 229 LEGEEITEEEIKAAIRKATINMEFFP----VLCGSAFKNKGVQPLLDAVVDYLPS 279 (691)
T ss_pred hccCCCCHHHHHHHHHHHHHcCCEEE----EEeccccCCccHHHHHHHHHHHCCC
Confidence 99999999999999999999999999 9999999999999999999987644
No 21
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=2.1e-18 Score=177.45 Aligned_cols=118 Identities=24% Similarity=0.286 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~~a 376 (596)
.|+++|++|||||||+|+|+|..+. +.+.+++|.+...+.....+.++.++||||+... ...+...+ ..+...+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK-KHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC-cchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998754 4566677766544333333338999999998753 22222222 2345566789
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++.+.... ..+.+.+...+ .|+++|+||+|+.+
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~~~------~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQNLK------RPVVLTRNKLDNKF 121 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHhcC------CCEEEEEECeeCCC
Confidence 9999999998764332 44555555543 49999999999864
No 22
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=1e-18 Score=192.41 Aligned_cols=130 Identities=28% Similarity=0.328 Sum_probs=94.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
-...|+|||++|||||||||+|++....+.+++|+|+.|..+.+.+.+..+.++||||++...... .......+..+..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g-~gLg~~fLrhier 236 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG-KGLGLDFLRHIER 236 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchh-hHHHHHHHHHHHh
Confidence 457899999999999999999999888888999999999999998877799999999997532111 1111234666778
Q ss_pred cCEEEEEEeCCCC----ChHHHHHHHHHHHHHcCC--------CcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAP----NLEEHRTTVLQVLQQVGV--------SEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~----~~~~~~~~v~~iL~~lgi--------~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|+++||+|++.. ........+.+.|..+.. .....+|+|+|+||+|+.+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 9999999999752 122333444444443321 01234699999999998643
No 23
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2.6e-18 Score=185.42 Aligned_cols=126 Identities=29% Similarity=0.360 Sum_probs=93.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccch--hhHHHHHHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPL--QLVDAFHATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~--~lv~af~~tl~e~ 373 (596)
+.-|+|||++|||||||||+|++....+.+++|+|+.+..+.+.+.+. .++++||||++..... .+.. ..+..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~---~~l~~i 235 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGI---RFLKHL 235 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHH---HHHHHH
Confidence 458999999999999999999998888899999999999999988766 6999999999853221 1222 234567
Q ss_pred HhcCEEEEEEeCCC---CChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTA---PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~---~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++. .........+.+.|..+.. ....+|+|+|+||+|+...
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~-~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP-KLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh-hhcCCCEEEEEeCCccCCh
Confidence 78999999999873 2233334444444444321 1123599999999998643
No 24
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.78 E-value=3e-18 Score=161.60 Aligned_cols=124 Identities=35% Similarity=0.416 Sum_probs=90.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccch--hhHHHHHHhHHHHHh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPL--QLVDAFHATLEEVVE 375 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~--~lv~af~~tl~e~~~ 375 (596)
.|+++|++|||||||+|+|++....+...++.|.++..+.+.+.+. .+.++||||+...... .+. ...+..+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~---~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG---HRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCch---HHHHHHHHh
Confidence 4899999999999999999997766667778888888888888776 9999999998642111 122 223444567
Q ss_pred cCEEEEEEeCCCC-ChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAP-NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~-~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++ ........+.+.+..... .....|+++|+||+|+.+.
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNP-ELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc-cccccccEEEEEchhcCCc
Confidence 9999999999987 444444555555554421 1123689999999998654
No 25
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=4.7e-18 Score=184.76 Aligned_cols=125 Identities=29% Similarity=0.349 Sum_probs=93.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC-ceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~-~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+.-|+|||++|||||||||+|++....+.+++|+|+.|..+.+.+.+ ..+.++||||++...... ..-....+..+..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~-~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEG-VGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCccccccc-chHHHHHHHHHhh
Confidence 45899999999999999999999887788899999999999988874 489999999997532221 1112234566777
Q ss_pred cCEEEEEEeCCCC---ChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 376 ADLLVHVLDCTAP---NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 376 aDliL~VvDas~~---~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
+++++||+|+++. ...+....+.+.|....- ....+|+|+|+||+|+
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~-~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP-RLLERPQIVVANKMDL 286 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhch-hccCCcEEEEEeCCCC
Confidence 9999999999753 233444555555555421 1234699999999997
No 26
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=4e-18 Score=180.29 Aligned_cols=129 Identities=32% Similarity=0.355 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC-ceeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GKVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~-~~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
-++-|+|||++|||||||+|+|++....+.+++|+|+.|+.+.+.+.+ ..+.++||||++...... .......++.+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~-~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG-AGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc-ccHHHHHHHHHH
Confidence 357899999999999999999999877788999999999999999887 499999999997542221 111223455667
Q ss_pred hcCEEEEEEeCCCC---ChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAP---NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~---~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|+++. ...+....+.+.|..+.- ....+|+|+|+||+|+.+.
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-ELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-hhccCCEEEEEeCccCCCh
Confidence 79999999999865 233444445455544421 1124699999999998654
No 27
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=3.3e-17 Score=179.64 Aligned_cols=213 Identities=19% Similarity=0.197 Sum_probs=136.8
Q ss_pred hCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCch
Q 007599 172 WGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAGE 251 (596)
Q Consensus 172 ~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~gE 251 (596)
.|+-.+.+++.|.++.. |+|. ..++..+.+|.-.+++.+..|.. .++.....-...++| |-|
T Consensus 109 NGk~DL~qaEav~dlI~--a~t~-~~~~~A~~~l~G~ls~~~~~~r~------------~l~~~~a~iea~iDf---~ee 170 (442)
T TIGR00450 109 NGKMDLTQAEAINELIL--APNN-KVKDIALNKLAGELDQKIEAIRK------------SLLQLLAQVEVNIDY---EED 170 (442)
T ss_pred cCCccHHHHHHHHHHHh--CCCH-HHHHHHHHhcCcHHHHHHHHHHH------------HHHHHHHHeeEECCc---CCC
Confidence 38899999999999998 3443 34455777777766654332210 011111110112344 433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccc
Q 007599 252 TELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFA 330 (596)
Q Consensus 252 ~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~ 330 (596)
. .+. ..+..++..+..+|+++-... . + .+.+ ...+|+++|++|+|||||+|+|++... .+.+.+++
T Consensus 171 ~-~~~--~~~~~~l~~~~~~l~~ll~~~-~-~-~~~~-------~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgt 237 (442)
T TIGR00450 171 D-DEQ--DSLNQLLLSIIAELKDILNSY-K-L-EKLD-------DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGT 237 (442)
T ss_pred C-ccH--HHHHHHHHHHHHHHHHHHHHH-H-H-HHhh-------cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc
Confidence 2 111 266666677777777765544 1 1 2221 347899999999999999999999763 56777888
Q ss_pred eecCeeEEEEECCceeEeeeccceeeccchhhHHH--HHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc
Q 007599 331 TLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDA--FHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE 408 (596)
Q Consensus 331 Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~a--f~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~ 408 (596)
|.+.....+.+.+..+.+|||||+... .+.++. +..+...+..+|++++|+|++++...... ++..+..
T Consensus 238 Trd~~~~~i~~~g~~v~l~DTaG~~~~--~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-----~l~~~~~-- 308 (442)
T TIGR00450 238 TRDVVEGDFELNGILIKLLDTAGIREH--ADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-----LIIDLNK-- 308 (442)
T ss_pred EEEEEEEEEEECCEEEEEeeCCCcccc--hhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-----HHHHHhh--
Confidence 888888888887668999999998643 222232 23456677889999999999876443322 2333221
Q ss_pred ccCCcEEEEEecCCCCC
Q 007599 409 EKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 409 ~~~~PiIvVlNKiDlv~ 425 (596)
...|+|+|+||+|+..
T Consensus 309 -~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 309 -SKKPFILVLNKIDLKI 324 (442)
T ss_pred -CCCCEEEEEECccCCC
Confidence 1359999999999853
No 28
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.77 E-value=1.3e-18 Score=169.09 Aligned_cols=114 Identities=25% Similarity=0.345 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc------------------ccccccceecCeeEEEE--ECCceeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF------------------SDARLFATLDPRLKSVV--LPSGKVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~------------------~~~~~f~Tld~t~~~i~--l~~~~i~liDTpG~i 355 (596)
..++|+++|+.|+|||||+++|++.... .+.....|.+.....+. ..+..+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999864321 11223556666666666 445599999999995
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
.+ ...+...+..+|++++|+|+..+. ..+.......+...++ |+|+|+||+|+.
T Consensus 82 ~f--------~~~~~~~~~~~D~ailvVda~~g~-~~~~~~~l~~~~~~~~------p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DF--------IKEMIRGLRQADIAILVVDANDGI-QPQTEEHLKILRELGI------PIIVVLNKMDLI 135 (188)
T ss_dssp HH--------HHHHHHHHTTSSEEEEEEETTTBS-THHHHHHHHHHHHTT-------SEEEEEETCTSS
T ss_pred ce--------eecccceecccccceeeeeccccc-cccccccccccccccc------ceEEeeeeccch
Confidence 42 334555677899999999998874 4556666677888876 899999999998
No 29
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=1.8e-18 Score=176.81 Aligned_cols=129 Identities=26% Similarity=0.294 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
-+.-|++||+||||||||+|+|+.....+.++.|+|+.|..+.+.+.+. ++.+.|.||+|.....+ .+--..-++.+.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n-kGlG~~FLrHiE 273 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN-KGLGYKFLRHIE 273 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCcccccccccc-CcccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999887 79999999999753322 111233477888
Q ss_pred hcCEEEEEEeCCCC---ChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAP---NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~---~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.++.+++|+|++.+ ..-++...++..|+.++- ....+|.++|.||+|+.++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek-~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK-GLADRPALIVANKIDLPEA 327 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh-hhccCceEEEEeccCchhH
Confidence 89999999999987 444455555555544432 1234699999999998643
No 30
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.76 E-value=1.2e-17 Score=157.29 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHH-Hh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEV-VE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~-~~ 375 (596)
|+|+++|++|+|||||+|+|++........++.|.......+.+.+.++.+|||||+... +......+ ..+.... ..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDR-PLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCc-cccCCchHHHHHHHHHHhc
Confidence 579999999999999999999987655566777777776666665458999999998532 11100000 1111111 23
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|+++.... .......++..+.-.. ...|+|+|+||+|+...
T Consensus 80 ~d~~l~v~d~~~~~~~-~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 80 RAAVLFLFDPSETCGY-SLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTF 128 (168)
T ss_pred cCcEEEEEeCCccccc-chHHHHHHHHHHHhhc-CcCCeEEEEEccccCch
Confidence 6899999999875321 1111223333332111 13599999999998653
No 31
>PRK15494 era GTPase Era; Provisional
Probab=99.75 E-value=2.7e-17 Score=174.75 Aligned_cols=121 Identities=23% Similarity=0.313 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeeccchhhHH-HHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVD-AFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~-af~~tl~e~~ 374 (596)
...|+++|++|||||||+|+|++..+. +...+.+|.+...+.+.+++.++.+|||||+..... .+.. ..+.....+.
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~-~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG-SLEKAMVRCAWSSLH 130 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc-cHHHHHHHHHHHHhh
Confidence 468999999999999999999998754 345566777766666777666999999999864321 2222 2334455577
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++.+. ......+.+.+...+ .|.|+|+||+|+.+
T Consensus 131 ~aDvil~VvD~~~s~-~~~~~~il~~l~~~~------~p~IlViNKiDl~~ 174 (339)
T PRK15494 131 SADLVLLIIDSLKSF-DDITHNILDKLRSLN------IVPIFLLNKIDIES 174 (339)
T ss_pred hCCEEEEEEECCCCC-CHHHHHHHHHHHhcC------CCEEEEEEhhcCcc
Confidence 899999999987642 233334445554443 37789999999853
No 32
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.75 E-value=2.1e-17 Score=155.28 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC---CceeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP---SGKVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~---~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
|+|+++|++|+|||||+|+|++..+......+.|.+.....+... +..+.++||||+... .......+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~~ 72 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF--------TNMRARGAS 72 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH--------HHHHHHHHh
Confidence 579999999999999999999877655555556665555555554 238999999998532 111122346
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++...... .....+...+ .|+++|+||+|+..
T Consensus 73 ~~d~il~v~d~~~~~~~~~~-~~~~~~~~~~------~p~ivv~NK~Dl~~ 116 (168)
T cd01887 73 LTDIAILVVAADDGVMPQTI-EAIKLAKAAN------VPFIVALNKIDKPN 116 (168)
T ss_pred hcCEEEEEEECCCCccHHHH-HHHHHHHHcC------CCEEEEEEceeccc
Confidence 79999999999876433322 2334454444 48999999999864
No 33
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.75 E-value=8.1e-18 Score=187.92 Aligned_cols=227 Identities=16% Similarity=0.061 Sum_probs=140.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCc----------------------ccccccceecCeeEEEEECCceeEeeeccce
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLF----------------------SDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~----------------------~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
..+|+|+|+.|||||||+++|+..... .+...+.|+......+.+.+..+.++||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 469999999999999999999732110 0111223344444556665558999999999
Q ss_pred eeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-ccc
Q 007599 355 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEY 433 (596)
Q Consensus 355 i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~ 433 (596)
..+. ..+...+..+|.+++|+|++.+. ..+...+++.+...++ |+|+++||+|+....... .++
T Consensus 90 ~df~--------~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~~~i------Piiv~iNK~D~~~a~~~~~l~~ 154 (526)
T PRK00741 90 EDFS--------EDTYRTLTAVDSALMVIDAAKGV-EPQTRKLMEVCRLRDT------PIFTFINKLDRDGREPLELLDE 154 (526)
T ss_pred hhhH--------HHHHHHHHHCCEEEEEEecCCCC-CHHHHHHHHHHHhcCC------CEEEEEECCcccccCHHHHHHH
Confidence 6431 22344556799999999998763 4555666666666554 999999999987654310 122
Q ss_pred ccccc----cccccc---ccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchh
Q 007599 434 IDGDD----ISNFSR---AEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEE 506 (596)
Q Consensus 434 ~~~~~----~~~~~s---a~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~ 506 (596)
+...+ .....+ .....|+.++.+...+.+....+.... ..+. +.+.|+.++ +
T Consensus 155 i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~------------------~~e~-~~~~dd~ll--e 213 (526)
T PRK00741 155 IEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQ------------------EVEI-IKGLDNPEL--D 213 (526)
T ss_pred HHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcce------------------eeee-ccCCCHHHH--H
Confidence 22211 111122 234667777766666555221111000 0000 112222233 4
Q ss_pred hhhccc---------cCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 507 EFWNAA---------EDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 507 ~y~~~~---------~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+|+.++ ++.+++.......++..|.++| |+++||.+|.||++||++|.+.+-.
T Consensus 214 ~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~~~P----V~~GSA~~n~Gv~~LLd~i~~~~P~ 275 (526)
T PRK00741 214 ELLGEDLAEQLREELELVQGASNEFDLEAFLAGELTP----VFFGSALNNFGVQEFLDAFVEWAPA 275 (526)
T ss_pred HHhcccHHHHHHHHHHhhhhcccchhHHHHhcCCeEE----EEEeecccCcCHHHHHHHHHHHCCC
Confidence 455443 3333333444588999999999 9999999999999999999998754
No 34
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=2.4e-17 Score=153.82 Aligned_cols=114 Identities=24% Similarity=0.316 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCeeEEEEEC-CceeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLP-SGKVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t~~~i~l~-~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+|+++|++|||||||+|+|++... ..+...+.|.+.....+.+. +..+.+|||||+..+ .......+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~--------~~~~~~~~~ 73 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF--------IKNMLAGAG 73 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH--------HHHHHhhhh
Confidence 699999999999999999998532 22223456777666666665 348999999998432 122334566
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++...... .....+...+. +|+|+|+||+|+.+.
T Consensus 74 ~ad~ii~V~d~~~~~~~~~~-~~~~~~~~~~~-----~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 74 GIDLVLLVVAADEGIMPQTR-EHLEILELLGI-----KRGLVVLTKADLVDE 119 (164)
T ss_pred cCCEEEEEEECCCCccHhHH-HHHHHHHHhCC-----CcEEEEEECccccCH
Confidence 79999999999874322222 22234444442 389999999998654
No 35
>PRK13351 elongation factor G; Reviewed
Probab=99.74 E-value=6.7e-18 Score=194.88 Aligned_cols=246 Identities=16% Similarity=0.131 Sum_probs=159.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc------------c------cccccceecCeeEEEEECCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF------------S------DARLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~------------~------~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
..++|+++|+.|+|||||+++|+..... . +.....|+......+.+.+..+.+|||||+..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4679999999999999999999853210 0 112344555556667776569999999999642
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 436 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~ 436 (596)
...+...+..+|++++|+|++.+.. .+...++..+...++ |+++|+||+|+...+... .+++..
T Consensus 87 --------~~~~~~~l~~aD~~ilVvd~~~~~~-~~~~~~~~~~~~~~~------p~iiviNK~D~~~~~~~~~~~~i~~ 151 (687)
T PRK13351 87 --------TGEVERSLRVLDGAVVVFDAVTGVQ-PQTETVWRQADRYGI------PRLIFINKMDRVGADLFKVLEDIEE 151 (687)
T ss_pred --------HHHHHHHHHhCCEEEEEEeCCCCCC-HHHHHHHHHHHhcCC------CEEEEEECCCCCCCCHHHHHHHHHH
Confidence 1223445567999999999988643 334455555555553 899999999998764211 122211
Q ss_pred cc----ccccccccc---cCCCccccccccccCCCCC-CCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhh
Q 007599 437 DD----ISNFSRAED---KDTTSEPVDVECIDNYGGD-DADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEF 508 (596)
Q Consensus 437 ~~----~~~~~sa~~---~~gi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y 508 (596)
.+ ...+.+... ..|+.++.....+.+.... ........++..+.+.+...+..+.+.+. +.|++++ ++|
T Consensus 152 ~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~-~~d~~ll--e~~ 228 (687)
T PRK13351 152 RFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALA-EFDDELL--ELY 228 (687)
T ss_pred HHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHH-hcCHHHH--HHH
Confidence 11 111122211 2344455444443332111 00011112233344444455666666654 4555666 899
Q ss_pred hccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 509 WNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+++..++.+++..+++.++..+.++| |+++||.+|.|++.||++|-..+-.
T Consensus 229 l~~~~l~~~~l~~~~~~~~~~~~~~P----V~~gSA~~~~Gv~~LLd~I~~~lPs 279 (687)
T PRK13351 229 LEGEELSAEQLRAPLREGTRSGHLVP----VLFGSALKNIGIEPLLDAVVDYLPS 279 (687)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCEEE----EEecccCcCccHHHHHHHHHHHCCC
Confidence 99999999999999999999999999 9999999999999999999987644
No 36
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.74 E-value=2.1e-17 Score=186.35 Aligned_cols=117 Identities=20% Similarity=0.151 Sum_probs=76.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC------------------CceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP------------------SGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~------------------~~~i~liDTpG~i~~ 357 (596)
+.|+|+++|++|+|||||+|+|++..+......+.|.+.....+... ...+.+|||||+..+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 46999999999999999999999986644333333332211111111 013889999998543
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
. ......+..+|++++|+|++++...+..+ ...++...+ .|+|+|+||+|+.+.+
T Consensus 83 ~--------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i~~l~~~~------vpiIVv~NK~Dl~~~~ 137 (590)
T TIGR00491 83 T--------NLRKRGGALADLAILIVDINEGFKPQTQE-ALNILRMYK------TPFVVAANKIDRIPGW 137 (590)
T ss_pred H--------HHHHHHHhhCCEEEEEEECCcCCCHhHHH-HHHHHHHcC------CCEEEEEECCCccchh
Confidence 1 11223456799999999998764333333 334555444 4899999999997643
No 37
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.6e-17 Score=180.66 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC--C-ceeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--S-GKVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~--~-~~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
+.|+|+++||..+||||||..|.+.++......+.|.+.....+.++ + ..++|+|||||..+. .+..+.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt--------~mRaRG 75 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT--------AMRARG 75 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH--------HHHhcC
Confidence 56999999999999999999999999988888889988888888885 2 389999999996431 112234
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
..-+|++++|||+.++.+++ +....+.++..+. |+|++.||+|+++.+
T Consensus 76 a~vtDIaILVVa~dDGv~pQ-TiEAI~hak~a~v------P~iVAiNKiDk~~~n 123 (509)
T COG0532 76 ASVTDIAILVVAADDGVMPQ-TIEAINHAKAAGV------PIVVAINKIDKPEAN 123 (509)
T ss_pred CccccEEEEEEEccCCcchh-HHHHHHHHHHCCC------CEEEEEecccCCCCC
Confidence 45689999999999985544 4444577888886 999999999998654
No 38
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.72 E-value=7.1e-17 Score=149.94 Aligned_cols=116 Identities=22% Similarity=0.226 Sum_probs=81.4
Q ss_pred EEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEE
Q 007599 302 VVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVH 381 (596)
Q Consensus 302 LVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~ 381 (596)
|+|++|+|||||+|+|++........+++|.+.....+.+++..+.++||||+....+......+.........+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999987666677888888888888887668999999999754333221222111111147999999
Q ss_pred EEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 382 VLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 382 VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|+|++++. ... .....+...+ .|+|+|+||+|+.+.
T Consensus 81 v~d~~~~~--~~~-~~~~~~~~~~------~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 81 VVDATNLE--RNL-YLTLQLLELG------LPVVVALNMIDEAEK 116 (158)
T ss_pred EeeCCcch--hHH-HHHHHHHHcC------CCEEEEEehhhhccc
Confidence 99998752 222 2222333333 499999999998654
No 39
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=1.1e-16 Score=166.08 Aligned_cols=120 Identities=28% Similarity=0.343 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcc-cccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHH-HHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAF-HATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af-~~tl~e~ 373 (596)
...|+|+|++|||||||+|+|+|..+.. ...+.+|.+.. ..+...++ ++.++||||+.... ..+...+ ......+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i-~~i~~~~~~qi~~iDTPG~~~~~-~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI-RGIVTEDDAQIIFVDTPGIHKPK-RALNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE-EEEEEcCCceEEEEECCCCCCch-hHHHHHHHHHHHHHH
Confidence 4689999999999999999999987643 33444444433 33333343 89999999986532 1222222 3345566
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++. ......+.+.+...+ .|+++|+||+|+..
T Consensus 83 ~~~D~il~vvd~~~~~-~~~~~~i~~~l~~~~------~pvilVlNKiDl~~ 127 (292)
T PRK00089 83 KDVDLVLFVVDADEKI-GPGDEFILEKLKKVK------TPVILVLNKIDLVK 127 (292)
T ss_pred hcCCEEEEEEeCCCCC-ChhHHHHHHHHhhcC------CCEEEEEECCcCCC
Confidence 7899999999998742 233344444444322 49999999999974
No 40
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=1.2e-16 Score=147.86 Aligned_cols=117 Identities=25% Similarity=0.248 Sum_probs=84.0
Q ss_pred EEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHHhcCE
Q 007599 301 AVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVVEADL 378 (596)
Q Consensus 301 aLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~~aDl 378 (596)
+++|++|+|||||+|+|++... .....+++|.+.......+.+..+.++||||+....+ .+...+ ..+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999999753 3455667777776667766666899999999976533 222222 233445677999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|+.++..... ..+..++...+ .|+++|+||+|+.+
T Consensus 80 ii~v~d~~~~~~~~~-~~~~~~~~~~~------~piiiv~nK~D~~~ 119 (157)
T cd01894 80 ILFVVDGREGLTPAD-EEIAKYLRKSK------KPVILVVNKVDNIK 119 (157)
T ss_pred EEEEEeccccCCccH-HHHHHHHHhcC------CCEEEEEECcccCC
Confidence 999999987543332 33456666554 49999999999865
No 41
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.72 E-value=3.3e-16 Score=144.62 Aligned_cols=119 Identities=29% Similarity=0.250 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
.+|+++|++|+|||||+|+|++... .....+++|.+.....+.+.+.++.++||||+......-....+..+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 4799999999999999999999764 345566667676666666655589999999986543211112233455666789
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++.+....... .+.. ....|+++|+||+|+.+
T Consensus 82 ~~~v~v~d~~~~~~~~~~~----~~~~-----~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLE----ILEL-----PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CEEEEEEECCCCCCHHHHH----HHHh-----hcCCCEEEEEEchhcCC
Confidence 9999999999764433332 2222 12259999999999864
No 42
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.72 E-value=1.7e-16 Score=160.25 Aligned_cols=126 Identities=29% Similarity=0.333 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|++|+|||||+|+|++....+.+.+|+|.++..+.+.+.+..+.++||||+++..+... ......+..+..+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK-GRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch-hHHHHHHHhhccCCE
Confidence 6899999999999999999998777788899999999888888766999999999875432211 112234556778999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcE----------EEEEecCCCCCcc
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM----------IEVWNKIDYHDEE 427 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~Pi----------IvVlNKiDlv~~~ 427 (596)
+++|+|++++ ..+...+.+.|+..|+......|. |-+.+++|+.+.+
T Consensus 81 il~V~D~t~~--~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~ 137 (233)
T cd01896 81 ILMVLDATKP--EGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLD 137 (233)
T ss_pred EEEEecCCcc--hhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCC
Confidence 9999999864 446777889999999854333342 2234566666544
No 43
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1.2e-16 Score=176.92 Aligned_cols=124 Identities=27% Similarity=0.371 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhh-HHHHH--HhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQL-VDAFH--ATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~l-v~af~--~tl~ 371 (596)
..++|+++|++|+|||||+|+|++... .+...+++|.++....+.+.+..+.+|||||+........ .+.+. .+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 458999999999999999999999864 4567788888887777777666899999999865432221 12222 2344
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+..+|++++|+|++++....... +...+...+ .|+|+|+||+|+.+.
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~~------~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIEAG------RALVLAFNKWDLVDE 337 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHcC------CCEEEEEECcccCCh
Confidence 567899999999999875544433 333333333 499999999999753
No 44
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.9e-16 Score=160.23 Aligned_cols=169 Identities=22% Similarity=0.274 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCCccccccccee
Q 007599 253 ELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL 332 (596)
Q Consensus 253 ~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tl 332 (596)
+....||....|++.+.+++..--......|.. .+..+..+.+.|+|.|.||||+|||||+++|++....+.+++|+|-
T Consensus 125 ~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~-l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK 203 (346)
T COG1084 125 EANQLRRQAFGRVASIIKKIDDDLEFLRKARDH-LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTK 203 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccc
Confidence 445566666666665544444322222222222 2235567778999999999999999999999999999999999999
Q ss_pred cCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHH-HhcCEEEEEEeCCCCC---hHHHHHHHHHHHHHcCCC
Q 007599 333 DPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEV-VEADLLVHVLDCTAPN---LEEHRTTVLQVLQQVGVS 407 (596)
Q Consensus 333 d~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~-~~aDliL~VvDas~~~---~~~~~~~v~~iL~~lgi~ 407 (596)
...++++.....+++++||||+... |-+-...+ +.+..++ ...++|+|++|.|..+ .+.|..-..++-..+.
T Consensus 204 ~i~vGhfe~~~~R~QvIDTPGlLDR-Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-- 280 (346)
T COG1084 204 GIHVGHFERGYLRIQVIDTPGLLDR-PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-- 280 (346)
T ss_pred ceeEeeeecCCceEEEecCCcccCC-ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--
Confidence 9999999987779999999999754 22211111 1222222 3478999999998642 3444433333333333
Q ss_pred cccCCcEEEEEecCCCCCcccc
Q 007599 408 EEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 408 ~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.|+++|+||+|..+.+..
T Consensus 281 ----~p~v~V~nK~D~~~~e~~ 298 (346)
T COG1084 281 ----APIVVVINKIDIADEEKL 298 (346)
T ss_pred ----CCeEEEEecccccchhHH
Confidence 489999999999876654
No 45
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.71 E-value=6.5e-17 Score=159.49 Aligned_cols=115 Identities=24% Similarity=0.250 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCeeEEEEEC---------------------------C-----
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLP---------------------------S----- 343 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t~~~i~l~---------------------------~----- 343 (596)
+|+++|++|+|||||+.+|++... ..+...+.|+......+.+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 699999999999999999988621 11112222333322222221 2
Q ss_pred -ceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 344 -GKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 344 -~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
..+.+|||||+... ....+..+..+|++++|+|++++....+....+..+...++ .|+|+|+||+|
T Consensus 82 ~~~i~~iDtPG~~~~--------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~-----~~iiivvNK~D 148 (203)
T cd01888 82 VRHVSFVDCPGHEIL--------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGL-----KHIIIVQNKID 148 (203)
T ss_pred ccEEEEEECCChHHH--------HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCC-----CcEEEEEEchh
Confidence 36899999997422 23345566679999999999875322233334445555554 37899999999
Q ss_pred CCCc
Q 007599 423 YHDE 426 (596)
Q Consensus 423 lv~~ 426 (596)
+.+.
T Consensus 149 l~~~ 152 (203)
T cd01888 149 LVKE 152 (203)
T ss_pred ccCH
Confidence 9753
No 46
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.71 E-value=1.2e-16 Score=155.62 Aligned_cols=113 Identities=28% Similarity=0.308 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCC-------CcccccccceecCeeEEEEEC--------------CceeEeeeccceeec
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSD-------LFSDARLFATLDPRLKSVVLP--------------SGKVLLSDTVGFISD 357 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~-------v~~~~~~f~Tld~t~~~i~l~--------------~~~i~liDTpG~i~~ 357 (596)
+|+++|++|+|||||+++|++.. ...+...+.|.+.....+.+. +..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 69999999999999999999731 122334556777766666554 23889999999842
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+ ..........+|.+++|+|++.+....... ...++...+ .|+++|+||+|+...
T Consensus 81 ----~---~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~~~~~~~------~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 ----L---IRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLVIGEILC------KKLIVVLNKIDLIPE 135 (192)
T ss_pred ----H---HHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHHHHHHcC------CCEEEEEECcccCCH
Confidence 2 223334456699999999998753322222 223333333 389999999998754
No 47
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=2.3e-16 Score=172.05 Aligned_cols=122 Identities=30% Similarity=0.324 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchh-hHHHH--HHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ-LVDAF--HATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~-lv~af--~~tl~ 371 (596)
+..+|+++|++|+|||||+|+|++.+. .+.+.+++|.++....+...+..+.++||||+....... ..+.+ ..++.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 457899999999999999999999763 456677888888777777766689999999986542211 12222 34566
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
.+..+|++++|+|++++..... ..+...+...+ .|+|+|+||+|++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~-~~~~~~~~~~~------~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQD-LRIAGLILEAG------KALVIVVNKWDLV 296 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHH-HHHHHHHHHcC------CcEEEEEECcccC
Confidence 7788999999999998754433 34444444434 4899999999997
No 48
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=1e-16 Score=171.80 Aligned_cols=125 Identities=24% Similarity=0.330 Sum_probs=100.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-CcccccccceecCeeEEEEECCceeEeeeccceeeccchh-hHH--HHHHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ-LVD--AFHATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~-lv~--af~~tl~ 371 (596)
....||++|.||+|||||+|+|+|.+ +.+.+.+++|.|+....+.+.+..+.++||+|.....-.. ..+ +...++.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 35899999999999999999999987 5678889999999988999888899999999986432211 111 2346788
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+..+|++++|+|++.+. .++...+..+..+.| +++|+|+||+|++..+
T Consensus 257 aI~~a~vvllviDa~~~~-~~qD~~ia~~i~~~g------~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 257 AIERADVVLLVIDATEGI-SEQDLRIAGLIEEAG------RGIVIVVNKWDLVEED 305 (444)
T ss_pred HHhhcCEEEEEEECCCCc-hHHHHHHHHHHHHcC------CCeEEEEEccccCCch
Confidence 888999999999999985 455566666666666 4899999999998864
No 49
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4e-17 Score=186.11 Aligned_cols=244 Identities=18% Similarity=0.118 Sum_probs=179.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC------------------cccccccceecCeeEEEEECC-ceeEeeeccceee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL------------------FSDARLFATLDPRLKSVVLPS-GKVLLSDTVGFIS 356 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v------------------~~~~~~f~Tld~t~~~i~l~~-~~i~liDTpG~i~ 356 (596)
++++|+|+||.+||||||..+|+-..- ..+...+.|+.....++.+.+ ..++++|||||+.
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 678999999999999999999974321 123345677777888888886 6999999999996
Q ss_pred ccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-ccccc
Q 007599 357 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYID 435 (596)
Q Consensus 357 ~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~ 435 (596)
+. . -..+.++.+|.++.|+|+..+ ...+.+.+|..+...++ |.|+++||+|+...+... ...+.
T Consensus 89 Ft-----~---EV~rslrvlDgavvVvdaveG-V~~QTEtv~rqa~~~~v------p~i~fiNKmDR~~a~~~~~~~~l~ 153 (697)
T COG0480 89 FT-----I---EVERSLRVLDGAVVVVDAVEG-VEPQTETVWRQADKYGV------PRILFVNKMDRLGADFYLVVEQLK 153 (697)
T ss_pred cH-----H---HHHHHHHhhcceEEEEECCCC-eeecHHHHHHHHhhcCC------CeEEEEECccccccChhhhHHHHH
Confidence 51 1 223445569999999999987 57788889998888887 899999999999877431 22222
Q ss_pred ccccc----cccc---ccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhh
Q 007599 436 GDDIS----NFSR---AEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEF 508 (596)
Q Consensus 436 ~~~~~----~~~s---a~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y 508 (596)
..+.. .... .....|+.++..+.++.+.. +.......+|.+......+.+..+.+.+. +.|++++ +.|
T Consensus 154 ~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~--~~~~~~~~ip~~~~~~~~e~r~~~~e~i~-e~de~l~--e~y 228 (697)
T COG0480 154 ERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGD--GAKYEWIEIPADLKEIAEEAREKLLEALA-EFDEELM--EKY 228 (697)
T ss_pred HHhCCCceeeeccccCccccCceeEhhhcCeEEEcC--CcccceeeCCHHHHhHHHHHHHHHHHHHh-hcCHHHH--HHH
Confidence 22211 1112 22366777888888877753 22222233444444444445555666554 4555566 889
Q ss_pred hccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 509 WNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+++.+++.+++...++..+..+.++| +++.||.+|.|++.||++|-+.+-.
T Consensus 229 l~g~e~~~~~i~~~i~~~~~~~~~~p----vl~gsa~kn~gv~~lLdav~~~lPs 279 (697)
T COG0480 229 LEGEEPTEEEIKKALRKGTIAGKIVP----VLCGSAFKNKGVQPLLDAVVDYLPS 279 (697)
T ss_pred hcCCCccHHHHHHHHHHhhhccceee----EEeeecccCCcHHHHHHHHHHHCCC
Confidence 99999999999999999999999999 9999999999999999999998755
No 50
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.70 E-value=2.6e-16 Score=147.04 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=82.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||+|+|++........+..+.+.....+.+++. .+.+|||||.... .......+..+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~~~~ 73 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF--------RSLIPSYIRDS 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHhccC
Confidence 6899999999999999999998776666777777777777777665 6889999997432 11122335679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++.... .+..++..+........|+++|+||+|+..
T Consensus 74 ~~ii~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 74 SVAVVVYDITNRQSFD---NTDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred CEEEEEEECcCHHHHH---HHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 9999999998753322 333344433221112359999999999864
No 51
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=4.3e-16 Score=144.17 Aligned_cols=121 Identities=26% Similarity=0.303 Sum_probs=77.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccc-cccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDA-RLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~-~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~ 374 (596)
..+|+++|++|||||||+|+|++..+.... ...++...........+..+.++||||+....... ...+ ........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL-GERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH-HHHHHHHHHHHHH
Confidence 468999999999999999999998653322 22333322222222222378999999986432111 1112 12334567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++. ......+.+.+...+ .|+++|+||+|+..
T Consensus 82 ~~d~i~~v~d~~~~~-~~~~~~~~~~~~~~~------~~~iiv~nK~Dl~~ 125 (168)
T cd04163 82 DVDLVLFVVDASEPI-GEGDEFILELLKKSK------TPVILVLNKIDLVK 125 (168)
T ss_pred hCCEEEEEEECCCcc-CchHHHHHHHHHHhC------CCEEEEEEchhccc
Confidence 799999999998862 233334445555443 38999999999864
No 52
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=4.2e-16 Score=170.05 Aligned_cols=119 Identities=28% Similarity=0.276 Sum_probs=91.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~~a 376 (596)
+|+++|++|+|||||+|+|++... .+.+.++.|.+.....+.+.+..+.++||||+... ...+...+ ..+...+..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED-DDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc-chhHHHHHHHHHHHHHhhC
Confidence 489999999999999999999764 45677888888888888887669999999998532 22333333 3456677889
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|+..+... ....+.++|...+ +|+++|+||+|+..
T Consensus 80 d~vl~vvD~~~~~~~-~d~~i~~~l~~~~------~piilVvNK~D~~~ 121 (429)
T TIGR03594 80 DVILFVVDGREGLTP-EDEEIAKWLRKSG------KPVILVANKIDGKK 121 (429)
T ss_pred CEEEEEEeCCCCCCH-HHHHHHHHHHHhC------CCEEEEEECccCCc
Confidence 999999999876433 3345667777654 49999999999764
No 53
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.70 E-value=4.4e-16 Score=154.57 Aligned_cols=119 Identities=22% Similarity=0.196 Sum_probs=83.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+|+++|++|+|||||+++|++..+.....+..+.+.....+.++++ .+.+|||+|... +..+... .+..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~--~~~l~~~------~~~~ 73 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI--GGKMLDK------YIYG 73 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH--HHHHHHH------Hhhc
Confidence 6899999999999999999987665555556666766677777653 788999999742 1222222 2567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++...+....+...+...........|+|+|+||+|+..
T Consensus 74 ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 74 AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 99999999998875444444444555444322123347999999999864
No 54
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.2e-16 Score=171.45 Aligned_cols=123 Identities=25% Similarity=0.284 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchh-hHHHH--HHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ-LVDAF--HATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~-lv~af--~~tl~ 371 (596)
..+.|+++|++|+|||||+|+|++.+. .+.+.+++|.+.....+...+..+.++||||+....... ..+.+ ..++.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 358999999999999999999999763 456677777777666666655589999999986543322 12222 34566
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+..+|++++|+|++.+... +...+...+...+ +|+|+|+||+|+.+
T Consensus 252 ~~~~ad~~ilViD~~~~~~~-~~~~i~~~~~~~~------~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 252 AIERADVVLLVIDATEGITE-QDLRIAGLALEAG------RALVIVVNKWDLVD 298 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCH-HHHHHHHHHHHcC------CcEEEEEECccCCC
Confidence 77889999999999987543 3344445554444 48999999999874
No 55
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=5.2e-16 Score=171.85 Aligned_cols=122 Identities=28% Similarity=0.266 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHH-HhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFH-ATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~-~tl~e~ 373 (596)
+.|+|+|+|.+|+|||||+|+|++... .+.+.++.|.+.....+.+.+..+.+|||||+... ...+...+. .+...+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPD-AKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCc-chhHHHHHHHHHHHHH
Confidence 468999999999999999999999764 35667777877777777776668999999998632 122222232 244457
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++.+.... ...+.++|...+ .|+|+|+||+|+..
T Consensus 116 ~~aD~il~VvD~~~~~s~~-~~~i~~~l~~~~------~piilV~NK~Dl~~ 160 (472)
T PRK03003 116 RTADAVLFVVDATVGATAT-DEAVARVLRRSG------KPVILAANKVDDER 160 (472)
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHcC------CCEEEEEECccCCc
Confidence 7899999999999864433 344556665433 59999999999853
No 56
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=1.8e-16 Score=155.93 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC----------------cccccccceecCeeEEEEECCceeEeeeccceeeccchh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ 361 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v----------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~ 361 (596)
.+|+++|+.|+|||||+++|++... ..+...+.|.+.....+...+..+.++||||+..+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 6899999999999999999986310 11224566666655555544448999999998532
Q ss_pred hHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 362 LVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 362 lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
...+...+..+|++++|+|+..+. ..+...++..+...++ .++|+|+||+|++.
T Consensus 79 ----~~~~~~~~~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~-----~~iIvviNK~D~~~ 132 (195)
T cd01884 79 ----IKNMITGAAQMDGAILVVSATDGP-MPQTREHLLLARQVGV-----PYIVVFLNKADMVD 132 (195)
T ss_pred ----HHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCC-----CcEEEEEeCCCCCC
Confidence 233455667799999999998763 4555666677877775 13789999999974
No 57
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.69 E-value=5.8e-16 Score=145.99 Aligned_cols=118 Identities=23% Similarity=0.191 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||++++.+........+..+.+.....+.+.+. .+.+|||||.... .......+..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~ 74 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF--------RTITSSYYRG 74 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH--------HHHHHHHhCc
Confidence 57999999999999999999987544333333333444455555554 6889999997532 1111233457
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++. ....+.+++..+........|+++|.||+|+...
T Consensus 75 ~~~ii~v~d~~~~~---s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 75 AHGIIIVYDVTDQE---SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred CCEEEEEEECcCHH---HHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 99999999998753 3334444544442211223599999999998653
No 58
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=2.7e-16 Score=147.98 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCc----ccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLF----SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~----~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+|+++|++|+|||||+|+|++.... .......|.....+.+.+.+..+.+|||||+... .......+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL--------RSLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh--------HHHHHHHhC
Confidence 3899999999999999999875321 1223344555556677776558999999998532 111223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++.+.. ......++..+ ........|+++|+||+|+...
T Consensus 73 ~~~~~v~vvd~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 73 ECHAIIYVIDSTDRER---FEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred CCCEEEEEEECchHHH---HHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 7999999999976532 22222333222 1111223599999999998653
No 59
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=5.4e-16 Score=146.23 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=78.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||++++.+...........+.+.....+.+.+. .+.+|||||+... .......+.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~~ 74 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF--------RTITQSYYR 74 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH--------HHHHHHHhc
Confidence 368999999999999999999876543333223333444555666554 7789999997432 111233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++... ..+..++..+........|+|+|.||+|+...
T Consensus 75 ~~d~~llv~d~~~~~s~---~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 75 SANGAIIAYDITRRSSF---ESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred cCCEEEEEEECcCHHHH---HhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 69999999999876332 33334444432222234689999999998654
No 60
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.4e-16 Score=164.83 Aligned_cols=129 Identities=33% Similarity=0.354 Sum_probs=100.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+.-|++||.||||||||+++++.....+.+++|+|+.|..+.+...+. .+++.|.||+|+.-... ..--..-+.++..
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G-~GLG~~FLrHIER 237 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG-VGLGLRFLRHIER 237 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccC-CCccHHHHHHHHh
Confidence 356899999999999999999999999999999999999999998555 79999999999753221 1111233777888
Q ss_pred cCEEEEEEeCCCCC---hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 376 ADLLVHVLDCTAPN---LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 376 aDliL~VvDas~~~---~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+-+++||+|++... ..+....+.+-|+.++.. ...+|.++|+||+|++.+.
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~-L~~K~~ivv~NKiD~~~~~ 291 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPK-LAEKPRIVVLNKIDLPLDE 291 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHH-hccCceEEEEeccCCCcCH
Confidence 99999999998643 355667777777776532 2346999999999966544
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.69 E-value=6.6e-16 Score=145.27 Aligned_cols=119 Identities=20% Similarity=0.149 Sum_probs=81.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|||||||+++|++........+..+.+.....+...+. .+.+|||||.... .......+.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~ 74 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY--------RAITSAYYR 74 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH--------HHHHHHHHC
Confidence 368999999999999999999987765555555555556666777665 6889999997532 011123345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.++.+++|+|++++.. ...+.+++..+........|+++|+||+|+...
T Consensus 75 ~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 75 GAVGALLVYDITKKQT---FENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred CCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 6899999999987533 333444444432211223599999999998653
No 62
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=1.4e-15 Score=143.50 Aligned_cols=119 Identities=22% Similarity=0.184 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|||||||+|+|++...........+.+.....+.+++. .+.+|||||+..+. ......+..+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~~ 73 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ--------SLGVAFYRGA 73 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH--------hHHHHHhcCC
Confidence 6899999999999999999987543332222223334445666665 56799999975321 1122345669
Q ss_pred CEEEEEEeCCCCChHHHHHHH-HHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v-~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++........+ ..++..+........|+++|+||+|+..
T Consensus 74 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 74 DCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 999999999876432222222 2334444333333569999999999975
No 63
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=4e-16 Score=180.66 Aligned_cols=124 Identities=27% Similarity=0.377 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhh-HHHHH--HhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQL-VDAFH--ATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~l-v~af~--~tl~ 371 (596)
+.++|+++|++|||||||+|+|++.+. .+.+.+++|.++....+.+.+..+.+|||||+........ .+.+. .+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 458999999999999999999999874 4567788888887777777766899999999864322221 12221 2345
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+..+|++++|+|++++....... +...+...+ +|+|+|+||+|+.+.
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~~~------~piIiV~NK~DL~~~ 576 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVDAG------RALVLVFNKWDLMDE 576 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHcC------CCEEEEEEchhcCCh
Confidence 567899999999999875444433 334443333 499999999999753
No 64
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.68 E-value=1.4e-15 Score=149.56 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+|+|.+|+|||||++++.+........+..+.+.....+.+.+. .+.+|||||...+-.....+........+..+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999987654333333333333345556554 67899999975431111111111233446779
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++...+....+.+.+...........|+|+|.||+|+..
T Consensus 82 d~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 82 RAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 9999999998764333333333333222110123369999999999854
No 65
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=8.6e-16 Score=143.74 Aligned_cols=123 Identities=25% Similarity=0.299 Sum_probs=83.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchh-hHHHH--HHhHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ-LVDAF--HATLEE 372 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~-lv~af--~~tl~e 372 (596)
.++|+++|++|+|||||+|+|++... ...+.+++|.......+...+..+.+|||||+....... ..+.+ ...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 36899999999999999999999763 344556666666555666655589999999986432111 11111 223445
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+..+|++++|+|++++..... ..+...+...+ .|+++|+||+|+.+.
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~------~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IERADVVLLVIDATEGITEQD-LRIAGLILEEG------KALVIVVNKWDLVEK 128 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhH-HHHHHHHHhcC------CCEEEEEeccccCCc
Confidence 667999999999988754332 23333333323 489999999998765
No 66
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.68 E-value=3.4e-16 Score=177.01 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEE------------------CCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL------------------PSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l------------------~~~~i~liDTpG~i~~ 357 (596)
+.|+|+++|++|+|||||+|+|++..+........|.+.....+.. .-..+.+|||||+..+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 5699999999999999999999987654333222221111000000 0012789999999643
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
. ......+..+|++++|+|++++...+.. .....+...+ .|+++|+||+|+...
T Consensus 85 ~--------~~~~~~~~~aD~~IlVvDa~~g~~~qt~-e~i~~~~~~~------vpiIvviNK~D~~~~ 138 (586)
T PRK04004 85 T--------NLRKRGGALADIAILVVDINEGFQPQTI-EAINILKRRK------TPFVVAANKIDRIPG 138 (586)
T ss_pred H--------HHHHHhHhhCCEEEEEEECCCCCCHhHH-HHHHHHHHcC------CCEEEEEECcCCchh
Confidence 1 1122345679999999999876333333 3334555444 489999999998643
No 67
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.68 E-value=7.4e-16 Score=147.10 Aligned_cols=113 Identities=21% Similarity=0.199 Sum_probs=77.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCccc----------------ccccceecCeeEEEEECCceeEeeeccceeeccchhh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSD----------------ARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQL 362 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~----------------~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~l 362 (596)
+|+++|.+|||||||+|+|++...... ...+.|.+.....+.+.+..+.++||||+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 389999999999999999998654321 12334555555555555558999999998532
Q ss_pred HHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 363 VDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 363 v~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.......+..+|.+++|+|++++..... ......+...+ .|+++|+||+|+...
T Consensus 76 ---~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~------~~i~iv~nK~D~~~~ 129 (189)
T cd00881 76 ---SSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIAREGG------LPIIVAINKIDRVGE 129 (189)
T ss_pred ---HHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHHCC------CCeEEEEECCCCcch
Confidence 1123344567999999999988643332 23333343322 499999999999874
No 68
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=3.3e-16 Score=148.09 Aligned_cols=124 Identities=31% Similarity=0.408 Sum_probs=83.8
Q ss_pred EEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC-CceeEeeeccceeeccch--hhHHHHHHhHHHHHhcCE
Q 007599 302 VVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SGKVLLSDTVGFISDLPL--QLVDAFHATLEEVVEADL 378 (596)
Q Consensus 302 LVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~-~~~i~liDTpG~i~~lp~--~lv~af~~tl~e~~~aDl 378 (596)
++|++|||||||+|+|++....+.+.+++|.++..+.+.+. +..+.++||||+...... .+.. .....+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~---~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGN---QFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccH---HHHHHHhccCE
Confidence 58999999999999999987666777888988888888777 459999999998542211 1111 12334566999
Q ss_pred EEEEEeCCCCC------hHHHHHHHHHHHHHcCCC----cccCCcEEEEEecCCCCCccc
Q 007599 379 LVHVLDCTAPN------LEEHRTTVLQVLQQVGVS----EEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 379 iL~VvDas~~~------~~~~~~~v~~iL~~lgi~----~~~~~PiIvVlNKiDlv~~~~ 428 (596)
+++|+|++++. .......+...+...... .....|+++|+||+|+.....
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH
Confidence 99999998762 222322222222221100 012469999999999976433
No 69
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.68 E-value=1e-15 Score=144.71 Aligned_cols=118 Identities=21% Similarity=0.158 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|+|||||+++|++........+..+.+.....+..++. .+.+|||||.... .......+..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~--------~~~~~~~~~~ 73 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY--------RTITTAYYRG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------HHHHHHHccC
Confidence 57999999999999999999987643322222222222334444443 7889999997532 1112334567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++. ..+.+.+++..+........|+++|+||+|+.+.
T Consensus 74 ~~~~l~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 74 AMGFILMYDITNEE---SFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred CcEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 99999999998653 3444455555543222234689999999998653
No 70
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=1e-15 Score=143.02 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|||||||+++|++...........+.+.....+.+.+. .+.+|||||...+ .......+..+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~~ 73 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF--------RSITSSYYRGA 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------HHHHHHHhCCC
Confidence 6899999999999999999987664444444445555556666654 7889999997432 11122234569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++++...+ .+..++..+........|+++|+||+|+...
T Consensus 74 d~~ilv~d~~~~~s~~---~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 74 VGALLVYDITNRESFE---NLKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred CEEEEEEECCCHHHHH---HHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 9999999998764333 3334444432211124699999999997653
No 71
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.67 E-value=1.7e-15 Score=141.62 Aligned_cols=119 Identities=21% Similarity=0.185 Sum_probs=76.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||...+. ......+..+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~~ 73 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL--------EVRNEFYKDT 73 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH--------HHHHHHhccC
Confidence 6899999999999999999997654433333334444455666554 78899999984321 1112234569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCC--cccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS--EEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~--~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++........+...+...... .....|+++|+||+|+.+
T Consensus 74 d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 74 QGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 9999999998763333322222222222111 113469999999999864
No 72
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.67 E-value=5.9e-16 Score=179.01 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+.|+|+++|+.|+|||||+++|.+..+......+.|.+.....+.+.+..+.||||||+..+. ......+..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~--------~m~~rga~~ 360 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT--------AMRARGAQV 360 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccch--------hHHHhhhhh
Confidence 469999999999999999999998777666666777777767777766689999999997541 111234566
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|+.++...+. ...+..+...++ |+|+|+||+|+...
T Consensus 361 aDiaILVVdAddGv~~qT-~e~i~~a~~~~v------PiIVviNKiDl~~a 404 (787)
T PRK05306 361 TDIVVLVVAADDGVMPQT-IEAINHAKAAGV------PIIVAINKIDKPGA 404 (787)
T ss_pred CCEEEEEEECCCCCCHhH-HHHHHHHHhcCC------cEEEEEECcccccc
Confidence 999999999988644333 334455555554 89999999999653
No 73
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.67 E-value=3.1e-16 Score=174.86 Aligned_cols=120 Identities=28% Similarity=0.295 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
..||++|.||+|||||+|+|||.+..+.+.++.|.+-..+.+.+.++.+.++|.||..+-.+.+..+......-.-..+|
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D 83 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPD 83 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCC
Confidence 56999999999999999999999999999999999999999999988999999999988777666565544444445689
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 378 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 378 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+++.|+|++. .+....-..+++ ++|. |+|+++|++|....
T Consensus 84 ~ivnVvDAtn--LeRnLyltlQLl-E~g~------p~ilaLNm~D~A~~ 123 (653)
T COG0370 84 LIVNVVDATN--LERNLYLTLQLL-ELGI------PMILALNMIDEAKK 123 (653)
T ss_pred EEEEEcccch--HHHHHHHHHHHH-HcCC------CeEEEeccHhhHHh
Confidence 9999999986 355555554544 5665 89999999997554
No 74
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.67 E-value=1.7e-15 Score=143.80 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=81.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||++++++........+..+.+.....+...+. .+.+|||||.... .......+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~ 75 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF--------RSITRSYYR 75 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHhc
Confidence 468999999999999999999987654444444444544455566554 7889999996421 112334456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++. ....+..++..+........|+|+|.||+|+..
T Consensus 76 ~~d~il~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 76 GAAGALLVYDITRRE---TFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred cCCEEEEEEECCCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 799999999998653 334455555544322223469999999999864
No 75
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=1.7e-15 Score=165.78 Aligned_cols=120 Identities=27% Similarity=0.264 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~~ 375 (596)
++|+++|.+|+|||||+|+|++... .+.+.++.|.+.....+.+.+..+.+|||||+... ...+...+ ..+...+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD-DDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc-chhHHHHHHHHHHHHHHh
Confidence 6899999999999999999999764 45667788888888888887669999999999752 12222222 334556778
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++.... ...+.++|...+ .|+|+|+||+|+..
T Consensus 81 ad~il~vvd~~~~~~~~-~~~~~~~l~~~~------~piilv~NK~D~~~ 123 (435)
T PRK00093 81 ADVILFVVDGRAGLTPA-DEEIAKILRKSN------KPVILVVNKVDGPD 123 (435)
T ss_pred CCEEEEEEECCCCCCHH-HHHHHHHHHHcC------CcEEEEEECccCcc
Confidence 99999999998764333 334556777654 49999999999644
No 76
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=1.6e-15 Score=143.61 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||++++++........+..+.+.....+.+.+. .+.+|||||.... . ......+.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--~------~~~~~~~~ 74 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF--R------TITTAYYR 74 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH--H------HHHHHHhC
Confidence 478999999999999999999987644332333233333445566665 6889999997432 0 11223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++. ....+.+++..+........|+++|.||+|+.+.
T Consensus 75 ~ad~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 75 GAMGIILVYDITDEK---SFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred CCCEEEEEEECcCHH---HHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 799999999998753 3344445554443222234699999999998653
No 77
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=8.9e-17 Score=177.40 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=127.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCCcccc------cccceecCee------------EEEEECCceeEeeeccceee
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDA------RLFATLDPRL------------KSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~------~~f~Tld~t~------------~~i~l~~~~i~liDTpG~i~ 356 (596)
-+.|++||+||..+|||-|+..|.+.++.... +.++|..|.. ..-.+.-..+++|||||+.+
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 35799999999999999999999998876444 4444444421 00001111478999999975
Q ss_pred ccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccccccccc
Q 007599 357 DLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGDVEYIDG 436 (596)
Q Consensus 357 ~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~~~~~~~ 436 (596)
+ .++ .-+....||++|+|+|+.|+. +.+.-...++|..-. .|+|+++||+|++..|.. .
T Consensus 553 F--tnl------RsrgsslC~~aIlvvdImhGl-epqtiESi~lLR~rk------tpFivALNKiDRLYgwk~-~----- 611 (1064)
T KOG1144|consen 553 F--TNL------RSRGSSLCDLAILVVDIMHGL-EPQTIESINLLRMRK------TPFIVALNKIDRLYGWKS-C----- 611 (1064)
T ss_pred h--hhh------hhccccccceEEEEeehhccC-CcchhHHHHHHHhcC------CCeEEeehhhhhhccccc-C-----
Confidence 4 122 122344599999999999984 444434445665544 499999999999998865 1
Q ss_pred ccccccccccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhhccccCCC
Q 007599 437 DDISNFSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQ 516 (596)
Q Consensus 437 ~~~~~~~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~~~~~~~~ 516 (596)
....++..+... ...+-.........++.+..+..++..-||.+.+..
T Consensus 612 p~~~i~~~lkkQ-------------------------------~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~- 659 (1064)
T KOG1144|consen 612 PNAPIVEALKKQ-------------------------------KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMG- 659 (1064)
T ss_pred CCchHHHHHHHh-------------------------------hHHHHHHHHHHHHHHHHHHHHcccchhheeeccccc-
Confidence 000011110000 000111122233445555555556677889887755
Q ss_pred cccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 517 PESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 517 ~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
..+++||+||++|+||++||.+|-+..+..
T Consensus 660 ------------------~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 660 ------------------ETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred ------------------ceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 566799999999999999999988765543
No 78
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.67 E-value=2.7e-15 Score=140.79 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|||||||+|++.+..... ....++.+.....+...+. .+.+|||||..... .+ ....+..+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--~~------~~~~~~~~ 72 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS--AM------RDQYMRTG 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch--HH------HHHHHhhC
Confidence 68999999999999999999865432 2222222333334445444 67899999986531 11 12234569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|.+++|+|++++........+...+.... .....|+|+|.||+|+...
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 73 EGFLLVYSITDRQSFEEIKKFREQILRVK--DRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECcccccc
Confidence 99999999987643333333333333221 1123599999999998653
No 79
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=6.7e-16 Score=172.61 Aligned_cols=228 Identities=13% Similarity=0.058 Sum_probs=128.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCC--Cc----c----------------cccccceecCeeEEEEECCceeEeeeccce
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSD--LF----S----------------DARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~--v~----~----------------~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
.++|+|+|++|||||||+++|+... +. + +...+.|+......+.+.+..+.++||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 4699999999999999999986321 10 0 111233333444555555558999999999
Q ss_pred eeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-ccc
Q 007599 355 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEY 433 (596)
Q Consensus 355 i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~ 433 (596)
..+ . ..+...+..+|++++|+|++.+ ...+...+++.+...+ .|+|+|+||+|+...+... .+.
T Consensus 91 ~df-----~---~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~~~------~PiivviNKiD~~~~~~~~ll~~ 155 (527)
T TIGR00503 91 EDF-----S---EDTYRTLTAVDNCLMVIDAAKG-VETRTRKLMEVTRLRD------TPIFTFMNKLDRDIRDPLELLDE 155 (527)
T ss_pred hhH-----H---HHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHhcC------CCEEEEEECccccCCCHHHHHHH
Confidence 532 1 2244456679999999999876 3455566666665544 4999999999997543210 111
Q ss_pred ccccc----cccccc---ccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchh
Q 007599 434 IDGDD----ISNFSR---AEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEE 506 (596)
Q Consensus 434 ~~~~~----~~~~~s---a~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~ 506 (596)
+...+ .....+ .....|+.+++....+.|....+...... + ......+...+.++..+ . .+
T Consensus 156 i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~----~---~~~~~~~~~~e~~~~~~---~--~~ 223 (527)
T TIGR00503 156 VENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAV----R---QVKGLNNPALDSAVGSD---L--AQ 223 (527)
T ss_pred HHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEe----e---hhccCCChhhhhhhhHH---H--HH
Confidence 11111 011112 22355666676655554422111111100 0 00000111111110000 0 01
Q ss_pred hh------hcc--ccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 507 EF------WNA--AEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 507 ~y------~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+| ++. .+++ .+++..|.++| |+++||++|.||++||+.|.+.+-.
T Consensus 224 ~~~~~le~~~~~~~~~~--------~~~~~~~~~~P----V~~GSA~~n~Gv~~LLd~i~~~~Ps 276 (527)
T TIGR00503 224 QLRDELELVEGASNEFD--------LAAFHGGEMTP----VFFGTALGNFGVDHFLDGLLQWAPK 276 (527)
T ss_pred HHHHHHHHHhhhccccC--------HHHHhcCCeeE----EEEeecccCccHHHHHHHHHHHCCC
Confidence 11 110 0111 47788899988 9999999999999999999998754
No 80
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=1.8e-15 Score=168.16 Aligned_cols=61 Identities=28% Similarity=0.486 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCCccc-cccccee
Q 007599 254 LQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATL 332 (596)
Q Consensus 254 ~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~-~~~f~Tl 332 (596)
+..+||.|+++|..|+++|+++.+.+ ++++++|++|+|||||+|+|+|..+.+. +.+++++
T Consensus 44 ~~~drR~i~~ri~~L~~~L~Kv~~~~------------------~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 44 LPWSQPNIAERHAMLNNELRKISRLE------------------MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhccc------------------eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 34689999999999999999997642 7999999999999999999999876544 4444443
No 81
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.66 E-value=3.8e-16 Score=154.62 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcc-------------------------------cccccceecCeeEEEEECCceeE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFS-------------------------------DARLFATLDPRLKSVVLPSGKVL 347 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~-------------------------------~~~~f~Tld~t~~~i~l~~~~i~ 347 (596)
+|+++|++|||||||+++|+.....+ +...+.|.+.....+.+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 38999999999999999998643221 11256678887777777666999
Q ss_pred eeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 348 LSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 348 liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
++||||+..+ ...+...+..+|++++|+|++.+. ..+......++...+. +++|+|+||+|+.+
T Consensus 81 liDTpG~~~~--------~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~~~~~~~~~~~-----~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQY--------TRNMVTGASTADLAILLVDARKGV-LEQTRRHSYILSLLGI-----RHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHH--------HHHHHHhhhhCCEEEEEEECCCCc-cHhHHHHHHHHHHcCC-----CcEEEEEEchhccc
Confidence 9999998532 122344566799999999998864 3333444556665553 25788999999865
No 82
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.66 E-value=7.4e-16 Score=174.04 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+.|+|+++|++|+|||||+++|.+..+......+.|.+.....+.+.++ .+.+|||||+..+. ......+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~--------~~r~rga~ 157 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT--------SMRARGAK 157 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchh--------hHHHhhhc
Confidence 5689999999999999999999998776666667777776667777666 89999999997541 11223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++...+..+ ....+...++ |+|+|+||+|+..
T Consensus 158 ~aDiaILVVda~dgv~~qT~e-~i~~~~~~~v------PiIVviNKiDl~~ 201 (587)
T TIGR00487 158 VTDIVVLVVAADDGVMPQTIE-AISHAKAANV------PIIVAINKIDKPE 201 (587)
T ss_pred cCCEEEEEEECCCCCCHhHHH-HHHHHHHcCC------CEEEEEECccccc
Confidence 799999999998765444333 3344444443 8999999999854
No 83
>PRK04213 GTP-binding protein; Provisional
Probab=99.66 E-value=2e-15 Score=147.44 Aligned_cols=120 Identities=25% Similarity=0.279 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeecccee--eccchhhHHHHHHh----H
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFI--SDLPLQLVDAFHAT----L 370 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i--~~lp~~lv~af~~t----l 370 (596)
.+.|+++|++|+|||||+|+|++........+++|..+.. +.+ +.+.+|||||+. ...+....+.++.. +
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDW--GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eee--cceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999987655566677766532 222 268999999962 22222223334332 1
Q ss_pred H-HHHhcCEEEEEEeCCCCCh----------HHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 371 E-EVVEADLLVHVLDCTAPNL----------EEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 371 ~-e~~~aDliL~VvDas~~~~----------~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
. .+..++++++|+|.+.... ......+...+...+ .|+++|+||+|+.+.
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG------IPPIVAVNKMDKIKN 145 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC------CCeEEEEECccccCc
Confidence 1 2345689999999864210 011123344444433 499999999998653
No 84
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.66 E-value=2.3e-15 Score=140.63 Aligned_cols=117 Identities=17% Similarity=0.114 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
.|+++|++|||||||+++|++........ ..|.......+...+..+.++||||..... ......+..+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~-~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~~d~ 71 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQII-VPTVGFNVESFEKGNLSFTAFDMSGQGKYR--------GLWEHYYKNIQG 71 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCccee-cCccccceEEEEECCEEEEEEECCCCHhhH--------HHHHHHHccCCE
Confidence 37899999999999999999864322211 223333233333333388999999986421 111223567999
Q ss_pred EEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|++++...... ..+..++....+. ....|+++|+||+|+.+
T Consensus 72 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 72 IIFVIDSSDRLRLVVVKDELELLLNHPDIK-HRRVPILFFANKMDLPD 118 (162)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccc-cCCCCEEEEEeCccccC
Confidence 9999999875322211 1222222211111 13469999999999865
No 85
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=8.7e-16 Score=173.81 Aligned_cols=114 Identities=25% Similarity=0.273 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCC---CcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSD---LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~---v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+|+++|++|+|||||+|+|+|.. ...+...+.|.+.....+.+++..+.+|||||+..+ ...+...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f--------~~~~~~g~~~ 73 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF--------ISNAIAGGGG 73 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH--------HHHHHhhhcc
Confidence 79999999999999999999854 223445677887777777776668999999998532 2344556778
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCCcc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDEE 427 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~~~ 427 (596)
+|++++|+|++++...+..++ ..++..+++ | +|+|+||+|+++.+
T Consensus 74 aD~aILVVDa~~G~~~qT~eh-l~il~~lgi------~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 74 IDAALLVVDADEGVMTQTGEH-LAVLDLLGI------PHTIVVITKADRVNEE 119 (581)
T ss_pred CCEEEEEEECCCCCcHHHHHH-HHHHHHcCC------CeEEEEEECCCCCCHH
Confidence 999999999998654444433 356766665 5 99999999997643
No 86
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=2.5e-15 Score=142.02 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||++++.+........+....+.....+.+.+. .+.+|||||...+ .......+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~ 74 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF--------RAVTRSYYRG 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHhcC
Confidence 57999999999999999999986543322211112222334455554 6789999997532 1112334567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++.. ...+..++..+........|+++|.||+|+...
T Consensus 75 ~~~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 75 AAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred CCEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 999999999987533 334445554432211233589999999998653
No 87
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=3.1e-15 Score=139.05 Aligned_cols=117 Identities=21% Similarity=0.144 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||+|+|++..... ....++.+.....+.+.+. .+.+|||+|..... .+ ....+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~l------~~~~~~~ 72 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--AM------RDQYMRT 72 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC-CcCCcchheEEEEEEECCEEEEEEEEECCCCcchH--HH------HHHHHhc
Confidence 479999999999999999999865332 2222222222334455554 57789999985431 11 1223456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|.+++|+|+++.........+...+.... .....|+++|+||+|+..
T Consensus 73 ~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 73 GEGFLCVFAINSRKSFEDIHTYREQIKRVK--DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccc
Confidence 999999999987532222222222222221 122459999999999865
No 88
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.66 E-value=1e-15 Score=174.06 Aligned_cols=114 Identities=23% Similarity=0.251 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+|+++|+.|+|||||+++|+|.+. ..+...+.|++.....+..+++ .+.++||||+..+ ...+...+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f--------i~~m~~g~~ 73 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF--------LSNMLAGVG 73 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH--------HHHHHHHhh
Confidence 799999999999999999998542 3344467787776666655555 7899999999532 244566677
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|+.++... +......++..+++ .++|+|+||+|+++.
T Consensus 74 ~~D~~lLVVda~eg~~~-qT~ehl~il~~lgi-----~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 74 GIDHALLVVACDDGVMA-QTREHLAILQLTGN-----PMLTVALTKADRVDE 119 (614)
T ss_pred cCCEEEEEEECCCCCcH-HHHHHHHHHHHcCC-----CeEEEEEECCccCCH
Confidence 89999999999887544 44444567777775 246899999999754
No 89
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=3.1e-15 Score=145.34 Aligned_cols=118 Identities=19% Similarity=0.106 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|.+|+|||||+++|.+..+. .....++.+.....+.+.+. .+.+|||||...+. ......+..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~a 71 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT--------ALRDQWIREG 71 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHHHHhC
Confidence 3899999999999999999875432 22333333333334555554 57899999975431 1112345679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++........+.+.+...........|+|+|+||+|+..
T Consensus 72 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 72 EGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 9999999998764434434343434333221123469999999999865
No 90
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.66 E-value=3.3e-15 Score=141.21 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCe-eEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR-LKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t-~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
.+|+++|++|+|||||++++++...... +. .|.... ...+..... .+.++||||+..+. ........
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YI-PTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cC-CcchheEEEEEEECCEEEEEEEEECCCCCcch--------HHHHHHhh
Confidence 4799999999999999999998654321 11 122222 222333333 68899999986531 11122345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|.+++|+|++++........+.+.+..+.-......|+++|.||+|+..
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 699999999998865444445555555554322223469999999999855
No 91
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.66 E-value=2.2e-15 Score=142.18 Aligned_cols=114 Identities=19% Similarity=0.082 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|.+|+|||||++++.+...................+.+.+. .+.+|||+|+..+. ......+..+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~ 73 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ--------TMHASYYHKA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHHHhCCC
Confidence 6899999999999999999986543222111111112223344443 67899999985421 1122345679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
|++++|+|++++........+...+.... ...|+++|+||+|+.
T Consensus 74 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 74 HACILVFDVTRKITYKNLSKWYEELREYR----PEIPCIVVANKIDLD 117 (161)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCcEEEEEECccCc
Confidence 99999999987643333333333333221 235999999999973
No 92
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.66 E-value=3.2e-15 Score=139.71 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|||||||++++.+.... .....++.+.....+.+.+. .+.+|||||...+. . . .-..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~----~--~~~~~~~ 72 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT--A----M--RDLYIKN 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCccccc--h----H--HHHHhhc
Confidence 57999999999999999999976432 22222333333444555554 57789999986431 1 1 1123456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|.+++|+|++++...+....+.+.+.... .....|+|+|+||+|+.+
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 73 GQGFVLVYSITSQSSFNDLQDLREQILRVK--DTENVPMVLVGNKCDLED 120 (163)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccc
Confidence 999999999987643333333333333322 113469999999999865
No 93
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=4.2e-15 Score=140.15 Aligned_cols=120 Identities=22% Similarity=0.164 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..++|+++|++|||||||+++|++........+..+.+.....+.+.+. .+.++||||+... .......+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 77 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF--------RSITQSYY 77 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHh
Confidence 3589999999999999999999975544333333334444555666554 5788999997432 11112345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+...+..+. ....|+++|+||+|+.+.
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 78 RSANALILTYDITCEESFRCLPEWLREIEQYA---NNKVITILVGNKIDLAER 127 (169)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECcccccc
Confidence 67999999999986533222233333333332 223589999999998653
No 94
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=3e-15 Score=173.44 Aligned_cols=122 Identities=26% Similarity=0.261 Sum_probs=89.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~ 373 (596)
..++|+++|++|+|||||+|+|++... .+.+.+++|.+.......+.+..+.+|||||+... ...+...+ ..+...+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD-VEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCC-CccHHHHHHHHHHHHH
Confidence 458999999999999999999999764 45667888887776666666668999999998642 12233333 3345567
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++.+.. .....+.+.|...+ +|+|+|+||+|+..
T Consensus 353 ~~aD~iL~VvDa~~~~~-~~d~~i~~~Lr~~~------~pvIlV~NK~D~~~ 397 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT-STDERIVRMLRRAG------KPVVLAVNKIDDQA 397 (712)
T ss_pred HhCCEEEEEEECCCCCC-HHHHHHHHHHHhcC------CCEEEEEECccccc
Confidence 78999999999987533 33334556665433 59999999999753
No 95
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.65 E-value=5.7e-15 Score=138.19 Aligned_cols=118 Identities=19% Similarity=0.107 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||++++.+.... .....++.+.....+.+.+. .+.+|||||+.... .+ ....+..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~~~~ 73 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV-TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS--AM------REQYMRT 73 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceEEEEEEECCEEEEEEEEECCCCcchh--HH------HHHHHhh
Confidence 58999999999999999999986532 22222222222334445554 67899999986431 11 1233456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|.+++|+|++++........+...+... ......|+|+|+||+|+...
T Consensus 74 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 74 GEGFLLVFSVTDRGSFEEVDKFHTQILRV--KDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHH--hCCCCCCEEEEeeCcccccc
Confidence 99999999998753322222222222221 11223599999999998643
No 96
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.65 E-value=1.7e-15 Score=175.78 Aligned_cols=119 Identities=23% Similarity=0.258 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccc----hhhHHHHHHhHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP----LQLVDAFHATLEEV 373 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp----~~lv~af~~tl~e~ 373 (596)
.+|+++|++|||||||+|+|+|....+.+.+++|.+...+.+.+.+.++.++||||+.+..+ ....+.........
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 68999999999999999999998888888899999988888877666999999999976432 12222222222223
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|+++. +.... +...+.+.++ |+|+|+||+|+.+
T Consensus 84 ~~aD~vI~VvDat~l--er~l~-l~~ql~e~gi------PvIvVlNK~Dl~~ 126 (772)
T PRK09554 84 GDADLLINVVDASNL--ERNLY-LTLQLLELGI------PCIVALNMLDIAE 126 (772)
T ss_pred cCCCEEEEEecCCcc--hhhHH-HHHHHHHcCC------CEEEEEEchhhhh
Confidence 469999999999874 22222 3334455553 9999999999854
No 97
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=5.3e-15 Score=143.11 Aligned_cols=116 Identities=18% Similarity=0.158 Sum_probs=75.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|.+|+|||||+++|++........+..+.+.....+.+.+. .+.+|||+|.... -......+..+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~~~~~~~~~ 73 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF--------RSLNNSYYRGA 73 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------HhhHHHHccCC
Confidence 6999999999999999999987653322222223333345555554 6789999997432 01123345679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++. ....+..++..+........|+|+|+||+|+.+
T Consensus 74 d~iilv~d~~~~~---s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 74 HGYLLVYDVTDQE---SFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred CEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 9999999998753 334444455444322222358999999999864
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=6e-15 Score=137.59 Aligned_cols=116 Identities=21% Similarity=0.148 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||+++|++.... .+..+++.+.....+...+. .+.++||||+.... . . ....+..+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~----~--~~~~~~~~ 72 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA--A----I--RDNYHRSG 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh--H----H--HHHHhhcC
Confidence 6899999999999999999986432 33444444444444455444 68899999985431 1 1 12234568
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|.+++|+|++++..-.........+..... ....|+++|+||+|+..
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 73 EGFLLVFSITDMESFTATAEFREQILRVKD--DDNVPLLLVGNKCDLED 119 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEcccccc
Confidence 999999999875322222222222222211 22369999999999865
No 99
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=156.03 Aligned_cols=152 Identities=24% Similarity=0.293 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCee
Q 007599 258 RRRILERRSHLLSQIEEVRRTRAVQRAARRR-HGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL 336 (596)
Q Consensus 258 rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r-~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~ 336 (596)
.-.+..++++|+++|++-+ ++.+... .-...+.|...|++||+|++|||||||+||+....+.+++|+|+.+..
T Consensus 28 ig~lKaklA~Lr~El~~~~-----~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VP 102 (365)
T COG1163 28 IGLLKAKLAELREELEKRK-----SKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVP 102 (365)
T ss_pred HHHHHHHHHHHHHHHhhhh-----hcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceeccccc
Confidence 3455555666666666541 1111110 001155788999999999999999999999999999999999999999
Q ss_pred EEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEE
Q 007599 337 KSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIE 416 (596)
Q Consensus 337 ~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIv 416 (596)
+.+.+.+-.++++|+||++....... +..+..+..++.||++++|+|+..+ ..+.+.+...|+..|+.....+|-|.
T Consensus 103 G~l~Y~ga~IQild~Pgii~gas~g~-grG~~vlsv~R~ADlIiiVld~~~~--~~~~~~i~~ELe~~GIrlnk~~p~V~ 179 (365)
T COG1163 103 GMLEYKGAQIQLLDLPGIIEGASSGR-GRGRQVLSVARNADLIIIVLDVFED--PHHRDIIERELEDVGIRLNKRPPDVT 179 (365)
T ss_pred ceEeecCceEEEEcCcccccCcccCC-CCcceeeeeeccCCEEEEEEecCCC--hhHHHHHHHHHHhcCeEecCCCCceE
Confidence 99999888999999999987643332 1123355667789999999999865 34477888999999987666556554
Q ss_pred E
Q 007599 417 V 417 (596)
Q Consensus 417 V 417 (596)
+
T Consensus 180 I 180 (365)
T COG1163 180 I 180 (365)
T ss_pred E
Confidence 3
No 100
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.64 E-value=3.4e-15 Score=142.30 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcc---------------cccccceecCeeEEEEE---CCc--eeEeeeccceeecc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFS---------------DARLFATLDPRLKSVVL---PSG--KVLLSDTVGFISDL 358 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~---------------~~~~f~Tld~t~~~i~l---~~~--~i~liDTpG~i~~l 358 (596)
+|+++|++|+|||||+++|++..... +...+.|..+....+.+ .+. .+.+|||||+..+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 69999999999999999998743111 01122344433333433 223 6889999999643
Q ss_pred chhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 359 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 359 p~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
. ..+...+..+|++++|+|++++........+. .+...+ .|+|+|+||+|+.+
T Consensus 81 ----~---~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~~~------~~iiiv~NK~Dl~~ 133 (179)
T cd01890 81 ----S---YEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALENN------LEIIPVINKIDLPS 133 (179)
T ss_pred ----H---HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHHcC------CCEEEEEECCCCCc
Confidence 1 12233456799999999998764333333332 222222 48999999999854
No 101
>PRK12740 elongation factor G; Reviewed
Probab=99.64 E-value=5.3e-16 Score=178.67 Aligned_cols=237 Identities=15% Similarity=0.099 Sum_probs=144.8
Q ss_pred EcCCCCCHHHHHHHHHCCCCc------------------ccccccceecCeeEEEEECCceeEeeeccceeeccchhhHH
Q 007599 303 VGYTNAGKSTLVSALSDSDLF------------------SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVD 364 (596)
Q Consensus 303 VG~tgAGKSTLLNaLtg~~v~------------------~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~ 364 (596)
+|+.|+|||||+++|+..... .+...+.|+......+.+.+..+.++||||+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 699999999999999543211 1112345555566677776669999999999642
Q ss_pred HHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccccc----c
Q 007599 365 AFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDGDD----I 439 (596)
Q Consensus 365 af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~~~----~ 439 (596)
...+...+..+|++++|+|++.+.. .+...++..+...+ .|+|+|+||+|+....... .+.+...+ .
T Consensus 74 -~~~~~~~l~~aD~vllvvd~~~~~~-~~~~~~~~~~~~~~------~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~ 145 (668)
T PRK12740 74 -TGEVERALRVLDGAVVVVCAVGGVE-PQTETVWRQAEKYG------VPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVV 145 (668)
T ss_pred -HHHHHHHHHHhCeEEEEEeCCCCcC-HHHHHHHHHHHHcC------CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCce
Confidence 1223344567999999999987643 33444445555544 3899999999997644210 11111111 1
Q ss_pred cccccccccC---CCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhhccccCCC
Q 007599 440 SNFSRAEDKD---TTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQ 516 (596)
Q Consensus 440 ~~~~sa~~~~---gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~~~~~~~~ 516 (596)
....+...+. |+.+++....+.+. ..........+....+.+...+..+.+.+. +.|++++ ++|+++.+++.
T Consensus 146 ~~~~p~~~~~~~~~~id~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~-~~d~~~l--e~~l~~~~l~~ 220 (668)
T PRK12740 146 PLQLPIGEGDDFTGVVDLLSMKAYRYD--EGGPSEEIEIPAELLDRAEEAREELLEALA-EFDDELM--EKYLEGEELSE 220 (668)
T ss_pred eEEecccCCCCceEEEECccceEEEec--CCCeeEEecCCHHHHHHHHHHHHHHHHHHH-hcCHHHH--HHHHCCCCCCH
Confidence 1112222222 22233222222221 111111111222223333334444444443 3444554 88999988888
Q ss_pred cccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 517 PESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 517 ~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+++...+++++..+.++| |+++||.+|.|++.||++|...+-.
T Consensus 221 ~~~~~~~~~~~~~~~~~P----v~~gSA~~~~Gv~~LLd~i~~~lPs 263 (668)
T PRK12740 221 EEIKAGLRKATLAGEIVP----VFCGSALKNKGVQRLLDAVVDYLPS 263 (668)
T ss_pred HHHHHHHHHHHHcCCEEE----EEeccccCCccHHHHHHHHHHHCCC
Confidence 889999999999999999 9999999999999999999987654
No 102
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.64 E-value=3.5e-15 Score=139.78 Aligned_cols=116 Identities=20% Similarity=0.115 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||+++|.+...........+.+.....+.+.+. .+.+|||||+... .......+..+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~~~~ 73 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF--------RSVTRSYYRGA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH--------HHhHHHHhcCC
Confidence 6899999999999999999987654443333333334444555554 7889999998532 11122345679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|.+++|+|++++.. ...+..++..+........|+++|+||+|+..
T Consensus 74 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 74 AGALLVYDITNRTS---FEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred CEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 99999999987533 33344454443222223469999999999865
No 103
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.64 E-value=1.9e-15 Score=173.58 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC--C--ceeEeeeccceeeccchhhHHHHHHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--S--GKVLLSDTVGFISDLPLQLVDAFHATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~--~--~~i~liDTpG~i~~lp~~lv~af~~tl~ 371 (596)
+.|+|+|+|++|+|||||+++|++..+......+.|.+.....+.+. + ..+.+|||||+..+ ......
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F--------~~mr~r 314 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF--------SSMRSR 314 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHH--------HHHHHH
Confidence 46899999999999999999999877655555566665554444443 2 38999999998532 112234
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+..+|++++|+|++++...+..+ .+..+...+ .|+|+|+||+|+...
T Consensus 315 g~~~aDiaILVVDA~dGv~~QT~E-~I~~~k~~~------iPiIVViNKiDl~~~ 362 (742)
T CHL00189 315 GANVTDIAILIIAADDGVKPQTIE-AINYIQAAN------VPIIVAINKIDKANA 362 (742)
T ss_pred HHHHCCEEEEEEECcCCCChhhHH-HHHHHHhcC------ceEEEEEECCCcccc
Confidence 567799999999998764433333 334444444 499999999998653
No 104
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=7.9e-15 Score=143.77 Aligned_cols=119 Identities=19% Similarity=0.101 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC-Cc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~-~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+|+++|.+|+|||||+++|++........+....+.....+.+. +. .+.+|||||...+. ......+..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~~~ 73 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG--------GMTRVYYRG 73 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh--------hhHHHHhCC
Confidence 68999999999999999999865433333333334444456665 33 68899999984320 112233567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++..-+....+...+.. +........|+|+|+||+|+.+
T Consensus 74 a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 74 AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 9999999999876433332222222222 1222224469999999999864
No 105
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.64 E-value=4.9e-15 Score=138.57 Aligned_cols=116 Identities=22% Similarity=0.185 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|||||||+|+|++........+..+.+.....+.+.+. .+.++||||.... .......+..+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~~ 73 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF--------RTLTSSYYRGA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh--------hhhhHHHhCCC
Confidence 6899999999999999999987544333333333333334445443 7899999997432 11112234569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
|++++|+|++++........+.+.+.... .....|+++|+||+|+.
T Consensus 74 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 74 QGVILVYDVTRRDTFTNLETWLNELETYS--TNNDIVKMLVGNKIDKE 119 (161)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhC--CCCCCcEEEEEECCccc
Confidence 99999999987643333333333333322 12345899999999986
No 106
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.64 E-value=6.7e-15 Score=142.15 Aligned_cols=115 Identities=24% Similarity=0.235 Sum_probs=77.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
..+|+++|++|||||||+++|.+.... ....|..+....+.+.+..+.++||||.... .......+..+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~a 87 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQA--------RRLWKDYFPEV 87 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHHH--------HHHHHHHhccC
Confidence 368899999999999999999986532 2234566666777776558999999997432 11122335678
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|.+++|+|+++.... ......+.. ++.......|+++|+||+|+..
T Consensus 88 d~iilV~D~~~~~s~---~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 88 DGIVFLVDAADPERF---QESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred CEEEEEEECCcHHHH---HHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 999999999865221 112222222 2222223469999999999864
No 107
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=9.9e-15 Score=141.97 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCccccccccee-cCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL-DPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tl-d~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+|+++|.+|+|||||++++.+.......+..++. +.....+.+.+. .+.+|||||.... .......+..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~ 73 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF--------RSVTHAYYRD 73 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH--------HHhhHHHccC
Confidence 5899999999999999999987654433333322 222223455444 7889999997432 1112234566
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++........+...+.... ....|+++|+||+|+..
T Consensus 74 ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 74 AHALLLLYDITNKASFDNIRAWLTEIKEYA---QEDVVIMLLGNKADMSG 120 (191)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEcccchh
Confidence 999999999987543333333333333332 22359999999999865
No 108
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.63 E-value=5.6e-15 Score=138.06 Aligned_cols=112 Identities=21% Similarity=0.193 Sum_probs=71.7
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
|+++|++|+|||||+++|++..... . ..|.......+..... .+.++||||.... .......+..+|+
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~-~--~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~~~~~~ 70 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVT-T--IPTVGFNVEMLQLEKHLSLTVWDVGGQEKM--------RTVWKCYLENTDG 70 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-c--cCccCcceEEEEeCCceEEEEEECCCCHhH--------HHHHHHHhccCCE
Confidence 7899999999999999999876432 1 2233333444555444 8999999998532 1111223566999
Q ss_pred EEEEEeCCCCChHH-HHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|++++.... ....+.+++.... ....|+++|+||+|+..
T Consensus 71 iv~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 71 LVYVVDSSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPG 115 (160)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECccccc
Confidence 99999998763211 1222333332211 12369999999999854
No 109
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.7e-15 Score=163.71 Aligned_cols=117 Identities=22% Similarity=0.244 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+.|+|.|+||..+||||||.+|.+..+......+.|.......+.+++| .++|.|||||..+ -.+..+...
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF--------~aMRaRGA~ 223 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF--------SAMRARGAN 223 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHH--------HHHHhccCc
Confidence 5799999999999999999999999988888888898888888899888 9999999999643 122344566
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+|++++||.+.++.+++..+.+ +..+..+. |+|+++||||+...+
T Consensus 224 vtDIvVLVVAadDGVmpQT~EaI-khAk~A~V------piVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMPQTLEAI-KHAKSANV------PIVVAINKIDKPGAN 269 (683)
T ss_pred cccEEEEEEEccCCccHhHHHHH-HHHHhcCC------CEEEEEeccCCCCCC
Confidence 68999999999988665544443 44555554 999999999987654
No 110
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.63 E-value=6.9e-15 Score=137.90 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|++|+|||||+++|+...... ...|+......+...+..+.+|||||...+. ......+..+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~~~~ 69 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT---TIPTIGFNVETVTYKNLKFQVWDLGGQTSIR--------PYWRCYYSNTDA 69 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC---cCCccCcCeEEEEECCEEEEEEECCCCHHHH--------HHHHHHhcCCCE
Confidence 38999999999999999997654321 1234444444555544489999999985321 111233567999
Q ss_pred EEEEEeCCCCChHH-HHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|++++.... ....+..++..... ...|+++|+||+|+.+
T Consensus 70 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 70 IIYVVDSTDRDRLGTAKEELHAMLEEEEL---KGAVLLVFANKQDMPG 114 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhh---cCCcEEEEEeCCCCCC
Confidence 99999998752211 12233333332221 2369999999999864
No 111
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.63 E-value=7.4e-15 Score=137.33 Aligned_cols=116 Identities=23% Similarity=0.169 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC--Cc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--SG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~--~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+|+++|.+|+|||||++++++........+..+.+.....+.+. +. .+.+|||||...+ .......+.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~ 73 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF--------DAITKAYYR 73 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH--------HHhHHHHhc
Confidence 69999999999999999999865433222222333333445554 33 7899999997432 111233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|.+++|+|++++.. ...+..++..+... ....|+|+|+||+|+...
T Consensus 74 ~~~~~v~v~d~~~~~s---~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 74 GAQACILVFSTTDRES---FEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred CCCEEEEEEECCCHHH---HHHHHHHHHHHHHh-CCCCCEEEEEEChhcccc
Confidence 7999999999987533 33334444443211 123599999999998653
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.63 E-value=8.9e-15 Score=135.96 Aligned_cols=116 Identities=21% Similarity=0.151 Sum_probs=73.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||+|+|.+...........+.......+.+.+. .+.+|||||.... ..+ .-..+..+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~------~~~~~~~~ 73 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--HAL------GPIYYRDA 73 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHH--HHh------hHHHhccC
Confidence 6899999999999999999987654332222222333344555444 6889999997432 111 11224569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|.+++|+|++++...+....+...+..... ...|+++|+||+|+..
T Consensus 74 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~D~~~ 119 (162)
T cd04123 74 DGAILVYDITDADSFQKVKKWIKELKQMRG---NNISLVIVGNKIDLER 119 (162)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccc
Confidence 999999999876433333333333333221 1469999999999864
No 113
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.63 E-value=6.7e-15 Score=137.74 Aligned_cols=117 Identities=20% Similarity=0.106 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||+|+|++........+..........+.+.+. .+.+|||||...+. ......+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~ 73 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR--------SLAPMYYRG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHH--------HHHHHHhcc
Confidence 47999999999999999999997654322221111222344555554 78899999974320 111223456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++..-.....+...+.... ....|+++|.||+|+..
T Consensus 74 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 74 AAAAIVVYDITSEESFEKAKSWVKELQRNA---SPNIIIALVGNKADLES 120 (163)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccc
Confidence 999999999987533333333323333322 13358999999999865
No 114
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.63 E-value=3.3e-15 Score=143.86 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-C-cccccccceecCeeEEEEECCceeEeeeccceeecc-chhhHHHHH----H
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-L-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDL-PLQLVDAFH----A 368 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l-p~~lv~af~----~ 368 (596)
+.+.|+++|++|+|||||+|+|++.. + .....++.|.+.... .. ++.+.++||||+.... +......+. .
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFF--EV-NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEE--Ee-CCcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 56899999999999999999999975 2 233344445443322 22 2479999999975321 111112222 1
Q ss_pred hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 369 TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 369 tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+.....+|.+++|+|++.+..... ..+.+++...+ .|+++|+||+|+..+.
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~-~~~~~~~~~~~------~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELD-LEMLEWLRERG------IPVLIVLTKADKLKKS 145 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHH-HHHHHHHHHcC------CCEEEEEECcccCCHH
Confidence 2222234689999999987643333 34445665544 4899999999997643
No 115
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.63 E-value=4.2e-15 Score=140.98 Aligned_cols=103 Identities=29% Similarity=0.347 Sum_probs=66.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|++|+|||||+|+|+|.... ......+.+... .+|||||+....+.. +......+..+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~---------~~~~~~v~~~~~--~~iDtpG~~~~~~~~----~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL---------ARKTQAVEFNDK--GDIDTPGEYFSHPRW----YHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc---------CccceEEEECCC--CcccCCccccCCHHH----HHHHHHHHhcCCE
Confidence 6999999999999999999986421 122233444333 269999985432221 2223344677999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|++.+..... ..+..+.. ..|+++|+||+|+.+
T Consensus 68 il~v~d~~~~~s~~~-----~~~~~~~~----~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 68 LIYVHGANDPESRLP-----AGLLDIGV----SKRQIAVISKTDMPD 105 (158)
T ss_pred EEEEEeCCCcccccC-----HHHHhccC----CCCeEEEEEccccCc
Confidence 999999987632211 12223321 248999999999743
No 116
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.63 E-value=1.2e-14 Score=142.62 Aligned_cols=119 Identities=20% Similarity=0.145 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
....|+++|++|+|||||++++.+..+.....+..+.+.....+.+.+. .+.+|||||...+ .......+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~ 76 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF--------RTITSTYY 76 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH--------HHHHHHHh
Confidence 4579999999999999999999986543222222222333344555554 6789999997532 01122335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++.. ...+..++..+... ....|+++|+||+|+...
T Consensus 77 ~~a~~iilv~D~~~~~s---~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 77 RGTHGVIVVYDVTNGES---FVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPER 125 (199)
T ss_pred CCCcEEEEEEECCCHHH---HHHHHHHHHHHHHh-CCCCCEEEEEECcccccc
Confidence 66899999999987533 33344444443211 123589999999998653
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.63 E-value=7.6e-15 Score=139.99 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
..++|+++|++|||||||+++|++..+.. ...|.......+.+.+..+.+|||||..... . .....+..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~---~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~--~------~~~~~~~~ 81 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT---ISPTLGFQIKTLEYEGYKLNIWDVGGQKTLR--P------YWRNYFES 81 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEECCEEEEEEECCCCHHHH--H------HHHHHhCC
Confidence 34789999999999999999999874321 1123333344555544488999999985320 0 11223557
Q ss_pred cCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++..... ...+..++... .....|+++|+||+|+..
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 82 TDALIWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPG 129 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECccccc
Confidence 999999999987632222 22222333211 113469999999999865
No 118
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.62 E-value=1.2e-14 Score=136.65 Aligned_cols=117 Identities=21% Similarity=0.134 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|||||||++++.... .......++.+.....+.+.+. .+.+|||||+..+. . . .-..+..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~----~--~~~~~~~ 72 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT--A----M--RDLYMKN 72 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccch--h----H--HHHHHhh
Confidence 479999999999999999998643 2333333333333345556554 56799999985431 1 1 1223566
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++...+....+...+... ......|+++|+||+|+..
T Consensus 73 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 73 GQGFVLVYSITAQSTFNDLQDLREQILRV--KDTEDVPMILVGNKCDLED 120 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEECCcchh
Confidence 99999999997653322222222222221 1123469999999999865
No 119
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.62 E-value=3.7e-15 Score=149.69 Aligned_cols=115 Identities=24% Similarity=0.241 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcc--------------cccccceec------------------------CeeEEEE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFS--------------DARLFATLD------------------------PRLKSVV 340 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~--------------~~~~f~Tld------------------------~t~~~i~ 340 (596)
+|+++|+.++|||||+++|+...... +...+.|.. .....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 37899999999999999998532110 000111110 0001122
Q ss_pred ECCceeEeeeccceeeccchhhHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 341 LPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 341 l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
..+..+.++||||+..+ .+.+...+. .+|++++|+|+.++. ..+...+..++...++ |+|+|+
T Consensus 81 ~~~~~i~liDtpG~~~~--------~~~~~~~~~~~~~D~~llVvda~~g~-~~~d~~~l~~l~~~~i------p~ivvv 145 (224)
T cd04165 81 KSSKLVTFIDLAGHERY--------LKTTLFGLTGYAPDYAMLVVAANAGI-IGMTKEHLGLALALNI------PVFVVV 145 (224)
T ss_pred eCCcEEEEEECCCcHHH--------HHHHHHhhcccCCCEEEEEEECCCCC-cHHHHHHHHHHHHcCC------CEEEEE
Confidence 22337899999998643 122333332 589999999998864 4555566677777775 899999
Q ss_pred ecCCCCCccc
Q 007599 419 NKIDYHDEEM 428 (596)
Q Consensus 419 NKiDlv~~~~ 428 (596)
||+|+.+...
T Consensus 146 NK~D~~~~~~ 155 (224)
T cd04165 146 TKIDLAPANI 155 (224)
T ss_pred ECccccCHHH
Confidence 9999976543
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.62 E-value=9.2e-15 Score=134.24 Aligned_cols=115 Identities=20% Similarity=0.165 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||+|+|.+...........+.+.....+...+. .+.++||||+.... ......+..+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~~ 73 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR--------SITPSYYRGA 73 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH--------HHHHHHhcCC
Confidence 6899999999999999999987655443333334444444555443 78899999984321 1123345569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
|++++|+|++++.. ...+..++..+........|+++|+||+|+.
T Consensus 74 d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 74 HGAILVYDITNRES---FENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred CEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999987532 2333333333322111235999999999986
No 121
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=141.69 Aligned_cols=124 Identities=22% Similarity=0.320 Sum_probs=91.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC--CcccccccceecCeeEEEEECCceeEeeecccee-eccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD--LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFI-SDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~--v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i-~~lp~~lv~af~~tl~e 372 (596)
+.|-||++|.+|+|||||+|+|++.. ..++..|+.|.......+ +..+.++|.|||- ...|....+.+...+.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cCcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999999976 456777777765543222 2358999999983 34455555555443333
Q ss_pred H----HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 373 V----VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 373 ~----~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+ .....+++++|+.++.. .....+.++|...++ |+++|+||+|++.....
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~-~~D~em~~~l~~~~i------~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPK-DLDREMIEFLLELGI------PVIVVLTKADKLKKSER 153 (200)
T ss_pred HHhhchhheEEEEEEECCCCCc-HHHHHHHHHHHHcCC------CeEEEEEccccCChhHH
Confidence 2 23567888999999854 444577789999887 89999999999986544
No 122
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.62 E-value=5.4e-15 Score=143.15 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=75.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-C-cccccccceecCeeEEEEECCceeEeeeccceeec-cchhhHHHHH----H
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-L-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD-LPLQLVDAFH----A 368 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~-lp~~lv~af~----~ 368 (596)
..+.|+++|++|||||||+|+|++.. . .....++.|...... .+ +.++.+|||||+... .+......+. .
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF--EV-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEE--ec-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 46899999999999999999999964 2 223334444333221 11 348999999997421 1211112221 1
Q ss_pred hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 369 TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 369 tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+.....++++++|+|++.+.... ...+..++...++ |+++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~-~~~i~~~l~~~~~------~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKEL-DLQMIEWLKEYGI------PVLIVLTKADKLKKG 151 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHH-HHHHHHHHHHcCC------cEEEEEECcccCCHH
Confidence 222223457888999987753322 2334456655543 899999999987653
No 123
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.62 E-value=9.6e-15 Score=141.21 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC--c-eeEeeeccceeeccchhhHHHHHH-hHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS--G-KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 373 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~--~-~i~liDTpG~i~~lp~~lv~af~~-tl~e~ 373 (596)
..|+++|++|+|||||++++.+.... ...+..+.+.....+...+ + .+.+|||||.... .. ....+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~~~~~~~~ 73 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---------RPLWKSYT 73 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH---------HHHHHHHh
Confidence 57999999999999999999886533 2222222222222333222 2 7899999998432 11 11224
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++... ..+..++..+. .......|+++|+||+|+..
T Consensus 74 ~~~d~ii~v~D~~~~~~~---~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 74 RCTDGIVFVVDSVDVERM---EEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred ccCCEEEEEEECCCHHHH---HHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 569999999999875322 22222222221 11122469999999999854
No 124
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.62 E-value=2e-15 Score=164.99 Aligned_cols=116 Identities=21% Similarity=0.178 Sum_probs=83.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc-------------------------------ccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-------------------------------SDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~-------------------------------~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|++|+|||||+++|+..... .+...+.|.+.....+...+.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4578999999999999999999854311 112567788888777776655
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCC--CChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTA--PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~--~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
.+.++||||+..+. ..+...+..+|++++|+|+++ +. ..+......++..++. .|+|+|+||+|
T Consensus 85 ~i~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~~~~~~~~~~~~~-----~~iivviNK~D 150 (425)
T PRK12317 85 YFTIVDCPGHRDFV--------KNMITGASQADAAVLVVAADDAGGV-MPQTREHVFLARTLGI-----NQLIVAINKMD 150 (425)
T ss_pred EEEEEECCCcccch--------hhHhhchhcCCEEEEEEEcccCCCC-CcchHHHHHHHHHcCC-----CeEEEEEEccc
Confidence 99999999985431 223334567999999999987 42 2333334455666654 36899999999
Q ss_pred CCC
Q 007599 423 YHD 425 (596)
Q Consensus 423 lv~ 425 (596)
+.+
T Consensus 151 l~~ 153 (425)
T PRK12317 151 AVN 153 (425)
T ss_pred ccc
Confidence 975
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=1.6e-14 Score=132.85 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=71.3
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEE
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLL 379 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDli 379 (596)
|+++|++|||||||+|+|++........+ |.......+...+..+.++||||.... .......+..+|.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~d~i 71 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGNVTLKVWDLGGQPRF--------RSMWERYCRGVNAI 71 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECCEEEEEEECCCCHhH--------HHHHHHHHhcCCEE
Confidence 79999999999999999999764433222 333333344443337899999998532 11122335669999
Q ss_pred EEEEeCCCCChHHH-HHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 380 VHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 380 L~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
++|+|++.+..... ...+..++... .....|+++|+||+|+.+.
T Consensus 72 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 72 VYVVDAADRTALEAAKNELHDLLEKP---SLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC
Confidence 99999986422111 12222222211 1123599999999998653
No 126
>PTZ00369 Ras-like protein; Provisional
Probab=99.62 E-value=1.3e-14 Score=140.83 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||++++.+...... ...++.......+.+++. .+.+|||||+..+. .+ ....+.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~l------~~~~~~ 75 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDE-YDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS--AM------RDQYMR 75 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCchhhEEEEEEEECCEEEEEEEEeCCCCccch--hh------HHHHhh
Confidence 47899999999999999999998653221 111111222334455555 57789999986431 11 112345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++........+...+.... .....|+|+|.||+|+.+
T Consensus 76 ~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~--~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 76 TGQGFLCVYSITSRSSFEEIASFREQILRVK--DKDRVPMILVGNKCDLDS 124 (189)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccc
Confidence 6999999999987643333333333332221 122459999999999854
No 127
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.61 E-value=8.9e-15 Score=142.62 Aligned_cols=114 Identities=24% Similarity=0.264 Sum_probs=75.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCC-Ccccc---------------cccceecCeeEEEEECCceeEeeeccceeeccch
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSD-LFSDA---------------RLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL 360 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~-v~~~~---------------~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~ 360 (596)
+++|+++|++|+|||||+++|++.. ..... ..+.|.......+...+..+.++||||+..+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~-- 79 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG-- 79 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH--
Confidence 3589999999999999999999631 11111 13344444444555544489999999986431
Q ss_pred hhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 361 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 361 ~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
......+..+|++++|+|++++.. .+...+...+...+ .|+++|+||+|+..
T Consensus 80 ------~~~~~~~~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~~~------~p~iiv~NK~Dl~~ 131 (194)
T cd01891 80 ------GEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALELG------LKPIVVINKIDRPD 131 (194)
T ss_pred ------HHHHHHHHhcCEEEEEEECCCCcc-HHHHHHHHHHHHcC------CCEEEEEECCCCCC
Confidence 122334567999999999987532 23333333333333 48999999999865
No 128
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.61 E-value=2.8e-15 Score=164.85 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCeeEEE---------------EEC---------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSV---------------VLP--------------- 342 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t~~~i---------------~l~--------------- 342 (596)
...+|+++||..+|||||+.+|+|... ..+...+.|++...... .++
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 457899999999999999999998653 22333344433322211 011
Q ss_pred ---CceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEe
Q 007599 343 ---SGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 419 (596)
Q Consensus 343 ---~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlN 419 (596)
...+.++||||+..+ .+.++..+..+|.+++|+|+..+....+......++..+++ +|+|+|+|
T Consensus 113 ~~~~~~i~~IDtPGH~~f--------i~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi-----~~iIVvlN 179 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDIL--------MATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKL-----KHIIILQN 179 (460)
T ss_pred ccccceEeeeeCCCHHHH--------HHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCC-----CcEEEEEe
Confidence 125889999998532 34556667789999999999875323344444567777776 37899999
Q ss_pred cCCCCCc
Q 007599 420 KIDYHDE 426 (596)
Q Consensus 420 KiDlv~~ 426 (596)
|+|+++.
T Consensus 180 KiDlv~~ 186 (460)
T PTZ00327 180 KIDLVKE 186 (460)
T ss_pred cccccCH
Confidence 9999764
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=1.2e-14 Score=140.81 Aligned_cols=115 Identities=21% Similarity=0.158 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
.+.|+++|.+|||||||+|+|.+..+.. ...|..++...+.+.+.++.++||||+.... ......+..+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~a 85 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEELAIGNIKFTTFDLGGHQQAR--------RLWKDYFPEV 85 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEEEEECCEEEEEEECCCCHHHH--------HHHHHHhCCC
Confidence 3789999999999999999999864321 1335566666666654589999999985320 1112234679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~ 425 (596)
|.+++|+|++++.. .......+..+ ........|+++|+||+|+..
T Consensus 86 d~ii~vvD~~~~~~---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 86 NGIVYLVDAYDKER---FAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred CEEEEEEECCcHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 99999999987532 22222222222 111123469999999999854
No 130
>CHL00071 tufA elongation factor Tu
Probab=99.61 E-value=4.2e-15 Score=161.84 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC----------------cccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v----------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+++|++|+|||||+++|++... ..+...+.|.+.....+...+..+.++||||+..+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~-- 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY-- 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH--
Confidence 457899999999999999999997421 12223566777655554444448999999997522
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCCc
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDE 426 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~~ 426 (596)
...+...+..+|++++|+|+..+. ..+...+...+..+++ | +|+|+||+|+++.
T Consensus 89 ------~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~~g~------~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 89 ------VKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQVGV------PNIVVFLNKEDQVDD 143 (409)
T ss_pred ------HHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCC------CEEEEEEEccCCCCH
Confidence 334455667899999999998764 4455555677777775 6 7789999999764
No 131
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.61 E-value=1.7e-14 Score=137.38 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|++|+|||||+++|.+... . . ...|.......+...+-.+.++||||..... ......+..+|.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~-~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~--------~~~~~~~~~ad~ 69 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-M-Q-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR--------PLWKHYYLNTQA 69 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-C-C-cCCcCceeEEEEEECCEEEEEEECCCChhcc--------hHHHHHhccCCE
Confidence 378999999999999999998632 1 1 2334443334455444489999999985431 112233566999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCC-CcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGV-SEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi-~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|++++. ....+..++..+-- ......|+++|.||+|+.+
T Consensus 70 ii~V~D~s~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 70 VVFVVDSSHRD---RVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred EEEEEeCCcHH---HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 99999998753 22223333333321 1122359999999999854
No 132
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.61 E-value=1.9e-14 Score=137.44 Aligned_cols=116 Identities=18% Similarity=0.123 Sum_probs=72.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|++|+|||||+++|...... .. ..|.......+...+-.+.+|||||..... ......+..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~--~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ 76 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TT--IPTVGFNVETVTYKNVKFNVWDVGGQDKIR--------PLWRHYYTG 76 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cc--cCCcccceEEEEECCEEEEEEECCCCHHHH--------HHHHHHhcc
Confidence 3478999999999999999999865432 11 123223333444433389999999985321 111223567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++.. ...+.+++.++ .-......|+++|+||+|+..
T Consensus 77 a~~ii~v~D~t~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 77 TQGLIFVVDSADRDR---IDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred CCEEEEEEeCCchhh---HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 999999999987532 22222333222 111112359999999999854
No 133
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.61 E-value=1.9e-14 Score=134.33 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|++|+|||||++++++.... ....|.......+.+.+..+.+|||||+.... . . ....+..+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--~----~--~~~~~~~~~~ 69 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR--P----L--WKHYYENTNG 69 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEEEEECCEEEEEEECCCChhhH--H----H--HHHHhccCCE
Confidence 3899999999999999999997621 22334445555566554589999999986430 1 1 1223456899
Q ss_pred EEEEEeCCCCChHHH-HHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 379 LVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 379 iL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+++|+|++.+..... ...+..++... .....|+++|+||+|+...
T Consensus 70 ~i~v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 70 IIFVVDSSDRERIEEAKEELHKLLNEE---ELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEeeccCCccc
Confidence 999999987632222 22222222222 1234699999999998654
No 134
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.61 E-value=1.8e-14 Score=135.13 Aligned_cols=116 Identities=21% Similarity=0.245 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCC-Ccccccccce-ecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSD-LFSDARLFAT-LDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~-v~~~~~~f~T-ld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
+|+++|++|||||||+++|.... .....+.+++ .+.....+.+.++ .+.+|||||.... ..+ ....+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~------~~~~~ 73 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY--SDM------VSNYW 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH--HHH------HHHHh
Confidence 68999999999999999998642 2333333332 2333334444432 7899999997421 111 12234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++... ..+..++..+.... ...|+|+|+||+|+.+.
T Consensus 74 ~~~d~ii~v~d~~~~~s~---~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 74 ESPSVFILVYDVSNKASF---ENCSRWVNKVRTAS-KHMPGVLVGNKMDLADK 122 (164)
T ss_pred CCCCEEEEEEECcCHHHH---HHHHHHHHHHHHhC-CCCCEEEEEECcccccc
Confidence 679999999999875332 33334444432211 23599999999998654
No 135
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=3.1e-14 Score=140.72 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+++|++..+. ...+..+.+.....+.+.+. .+.+|||||+..+- . .....+.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--~------~~~~~~~ 84 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR--T------LTSSYYR 84 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhH--H------HHHHHHh
Confidence 468999999999999999999986542 11122222233344555554 78899999986431 1 1223356
Q ss_pred hcCEEEEEEeCCCCChHHHHHH-HHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTT-VLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~-v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........ +...+..... ....|+|+|.||+|+...
T Consensus 85 ~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~--~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 85 NAQGIILVYDVTRRETFTNLSDVWGKEVELYST--NQDCVKMLVGNKVDRESE 135 (211)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccc
Confidence 7999999999987633333222 2222332211 123589999999998653
No 136
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.61 E-value=2.1e-14 Score=130.80 Aligned_cols=120 Identities=32% Similarity=0.297 Sum_probs=82.1
Q ss_pred EEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEE
Q 007599 302 VVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLL 379 (596)
Q Consensus 302 LVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDli 379 (596)
++|++|||||||+|+|++.... .....+.|............. .+.++||||+......... ........+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~-~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE-REELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh-HHHHHHHHHHhCCEE
Confidence 5899999999999999997755 556666677776666665534 8999999998764332211 012233455679999
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 380 VHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 380 L~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
++|+|++.+....... +...+...+ .|+++|+||+|+......
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~~~------~~~ivv~nK~D~~~~~~~ 122 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRERG------KPVLLVLNKIDLLPEEEE 122 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcC------CeEEEEEEccccCChhhH
Confidence 9999999875433332 222222233 489999999998775443
No 137
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.61 E-value=9.4e-15 Score=130.69 Aligned_cols=114 Identities=31% Similarity=0.405 Sum_probs=85.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhh-HHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQL-VDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~l-v~af~~tl~e~~~a 376 (596)
.|+|+|++|||||||+|+|++... .+...+++|..+....+.+.+..+.++||||+........ ...+...++.+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 489999999999999999999653 5677788888887677777777889999999976533332 12455677777889
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEec
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 420 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNK 420 (596)
|++++|+|++++ .......+.+.|+ ..+|+++|+||
T Consensus 81 d~ii~vv~~~~~-~~~~~~~~~~~l~-------~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP-ITEDDKNILRELK-------NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH-SHHHHHHHHHHHH-------TTSEEEEEEES
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHh-------cCCCEEEEEcC
Confidence 999999998763 2333344444442 23599999998
No 138
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.61 E-value=1.9e-14 Score=142.25 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
.|+++|..|+|||||++++....+.....+..+.+.....+.+.+. .+.+|||+|...+- ......+..+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~--------~l~~~y~~~a 73 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN--------SITSAYYRSA 73 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH--------HHHHHHhcCC
Confidence 5899999999999999999976543322222233444456677664 78899999985420 1122345679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++...+....+.+.+.... ....|+|+|.||+|+..
T Consensus 74 d~iIlVfDvtd~~Sf~~l~~w~~~i~~~~---~~~~piilVgNK~DL~~ 119 (202)
T cd04120 74 KGIILVYDITKKETFDDLPKWMKMIDKYA---SEDAELLLVGNKLDCET 119 (202)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCcEEEEEECccccc
Confidence 99999999998644444333333343332 23469999999999864
No 139
>PRK12736 elongation factor Tu; Reviewed
Probab=99.61 E-value=5.1e-15 Score=160.42 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC----------------cccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v----------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+++|+.++|||||+++|++... ..+...+.|++.....+...+..+.++||||+..+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH--
Confidence 457899999999999999999987311 11224556666544333333338999999998633
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCCc
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDE 426 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~~ 426 (596)
...+...+..+|++++|+|+..+.. .+......++..+++ | +|+|+||+|+++.
T Consensus 89 ------~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~g~------~~~IvviNK~D~~~~ 143 (394)
T PRK12736 89 ------VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQVGV------PYLVVFLNKVDLVDD 143 (394)
T ss_pred ------HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHcCC------CEEEEEEEecCCcch
Confidence 2344555667999999999987643 444455566777775 5 6889999998753
No 140
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.61 E-value=2.1e-14 Score=135.56 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|.+|+|||||++++...... . . ..|+......+....-.+.+|||||+... .......+..+|+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~-~-~pt~g~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~ad~ 70 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKNISFTVWDVGGQDKI--------RPLWRHYFQNTQG 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-c-c-CCCCCcceEEEEECCEEEEEEECCCCHhH--------HHHHHHHhcCCCE
Confidence 6899999999999999999654432 2 1 22333333345544338899999998532 1112234577999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|+++... ...+.+.+..+ .-......|+++|+||+|+.+
T Consensus 71 ~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 71 LIFVVDSNDRER---IGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred EEEEEeCCCHHH---HHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 999999987532 22222323222 111112359999999999854
No 141
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.60 E-value=2.2e-14 Score=137.35 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
.+|+++|++|+|||||+++|++..... ...|.......+.+.+..+.++||||+... . ......+..+|
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-----~---~~~~~~~~~~d 84 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVEEIVYKNIRFLMWDIGGQESL-----R---SSWNTYYTNTD 84 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEECCeEEEEEECCCCHHH-----H---HHHHHHhhcCC
Confidence 689999999999999999998754321 133444555556665458999999998532 1 11122356799
Q ss_pred EEEEEEeCCCCChH-HHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 378 LLVHVLDCTAPNLE-EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 378 liL~VvDas~~~~~-~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
++++|+|++++... .....+.+++...+. ...|+++|+||+|+..
T Consensus 85 ~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~---~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 85 AVILVIDSTDRERLPLTKEELYKMLAHEDL---RKAVLLVLANKQDLKG 130 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhchhh---cCCCEEEEEECCCCCC
Confidence 99999999875321 122223333332221 2369999999999854
No 142
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=1.9e-14 Score=143.28 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=80.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+++|++........+....+.....+.+.+. .+.+|||+|.... .......+.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~~ 83 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY--------RAITSAYYR 83 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHhC
Confidence 468999999999999999999987654444444444555566666654 7889999997532 111223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.++++++|+|++++...+. +..++..+.-......|+++|+||+|+..
T Consensus 84 ~~~~~ilv~d~~~~~s~~~---~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 84 GAVGALLVYDITKRQTFDN---VQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred CCCEEEEEEECCChHHHHH---HHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 7999999999987643333 33444333221123359999999999854
No 143
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.60 E-value=2.1e-14 Score=137.09 Aligned_cols=119 Identities=21% Similarity=0.161 Sum_probs=74.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC----------c--eeEeeeccceeeccchhhHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS----------G--KVLLSDTVGFISDLPLQLVD 364 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~----------~--~i~liDTpG~i~~lp~~lv~ 364 (596)
..+|+++|.+|+|||||++++.+........+..+.+.....+.+.. . .+.+|||||....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------- 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------
Confidence 36899999999999999999998654322222222222223333321 1 6789999997432
Q ss_pred HHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC-cccCCcEEEEEecCCCCCc
Q 007599 365 AFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 365 af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~-~~~~~PiIvVlNKiDlv~~ 426 (596)
.......+..+|++++|+|++++. ....+..++..+... .....|+++|.||+|+.+.
T Consensus 77 -~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 77 -RSLTTAFFRDAMGFLLIFDLTNEQ---SFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ 135 (180)
T ss_pred -HHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc
Confidence 111233456799999999998753 333444455443211 1123589999999998653
No 144
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.60 E-value=2.3e-14 Score=132.87 Aligned_cols=116 Identities=19% Similarity=0.128 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|||||||+++|++.. .......++.+.....+...+. .+.++|+||.... .......+..+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~~ 71 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF--------SAMRDLYIRQG 71 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH--------HHHHHHHHhcC
Confidence 38999999999999999999875 3333344444444445555543 6889999998542 11122335569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|.+++........++..+..... ....|+++|+||+|+..
T Consensus 72 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 72 DGFILVYSITDRESFEEIKGYREQILRVKD--DEDIPIVLVGNKCDLEN 118 (160)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCcEEEEEECCcccc
Confidence 999999999876443344444444433321 12359999999999866
No 145
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.8e-14 Score=153.37 Aligned_cols=127 Identities=27% Similarity=0.319 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHH--HHHHhHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVD--AFHATLEEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~--af~~tl~e~~ 374 (596)
+.|+|+|+||+|||||+|+|+..+. .+.+.+++|.|.....+.+++-++.++||+|+.+. ..+-++ .+......+.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEALGIERARKRIE 347 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc-cCChhHHHhHHHHHHHHh
Confidence 7899999999999999999999886 45677888888877777766669999999999762 112222 2455666778
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccc------CCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEK------LKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~------~~PiIvVlNKiDlv~~ 426 (596)
.||++++|+|+...... ....+.+.|...+..... .+|+|+|.||+|+...
T Consensus 348 ~advi~~vvda~~~~t~-sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTE-SDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred hcCEEEEEecccccccc-cchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 89999999999554332 233344666666543322 3689999999999876
No 146
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.60 E-value=6.6e-15 Score=146.96 Aligned_cols=115 Identities=23% Similarity=0.204 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCC-------------------------------CcccccccceecCeeEEEEECCceeE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSD-------------------------------LFSDARLFATLDPRLKSVVLPSGKVL 347 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~-------------------------------v~~~~~~f~Tld~t~~~i~l~~~~i~ 347 (596)
+|+++|+.|+|||||+.+|+... ...+...+.|.+.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999995321 01223456677777777777666999
Q ss_pred eeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCC------hHHHHHHHHHHHHHcCCCcccCCcEEEEEecC
Q 007599 348 LSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN------LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 421 (596)
Q Consensus 348 liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~------~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKi 421 (596)
++||||+..+. ......+..+|++++|+|++++. ...+.......+..++. +|+|+|+||+
T Consensus 81 liDtpG~~~~~--------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHRDFV--------PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGV-----KQLIVAVNKM 147 (219)
T ss_pred EEECCChHHHH--------HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCC-----CeEEEEEEcc
Confidence 99999985431 22344566799999999998742 12223333344444443 4799999999
Q ss_pred CCCCc
Q 007599 422 DYHDE 426 (596)
Q Consensus 422 Dlv~~ 426 (596)
|+...
T Consensus 148 Dl~~~ 152 (219)
T cd01883 148 DDVTV 152 (219)
T ss_pred ccccc
Confidence 99753
No 147
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=3e-14 Score=133.73 Aligned_cols=117 Identities=17% Similarity=0.102 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|+|||||++++........ ...+..+.....+.+.+. .+.+|||||...+.+ + ....+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~------~~~~~~~ 72 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS--M------RDLYIKN 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCchhheEEEEEEECCEEEEEEEEECCCcccccc--h------HHHHHhh
Confidence 4799999999999999999998654322 222222233345555554 577899999854311 1 1112456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|.+++|+|++++..-.....+...+.... .....|+++|+||+|+..
T Consensus 73 ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 73 GQGFIVVYSLVNQQTFQDIKPMRDQIVRVK--GYEKVPIILVGNKVDLES 120 (163)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccchh
Confidence 999999999987643333333333333321 123469999999999854
No 148
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.59 E-value=2.4e-14 Score=136.98 Aligned_cols=117 Identities=18% Similarity=0.097 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|.+|+|||||++++.+.....+..+....+.....+.+.+. .+.+|||||...+ .......+..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~a 73 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF--------KCIASTYYRGA 73 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH--------HhhHHHHhcCC
Confidence 5899999999999999999986543222222222333344555553 7899999998542 11123345679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++++. ....+.+++..+. .......|+|+|.||+|+.+.
T Consensus 74 d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 74 QAIIIVFDLTDVA---SLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred CEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 9999999997642 2333344444331 111122478999999998543
No 149
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.59 E-value=4.8e-14 Score=135.39 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=72.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
..+|+++|..|+|||||++++..... .. . ..|.......+...+-.+.+|||||.... .......+..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~-~-~~t~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~~~a 81 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VT-T-IPTIGFNVETVTYKNISFTVWDVGGQDKI--------RPLWRHYYTNT 81 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CC-c-CCccccceEEEEECCEEEEEEECCCChhh--------HHHHHHHhCCC
Confidence 47899999999999999999964332 11 1 12333333344444338999999998532 11122235779
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++.. ...+.+++..+- -......|+++|+||+|+.+
T Consensus 82 d~ii~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 82 QGLIFVVDSNDRDR---IDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred CEEEEEEECCCHHH---HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 99999999987532 222233333321 11112359999999999854
No 150
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.59 E-value=4.7e-14 Score=133.49 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||++++.+........+..+.+.....+.+.+. .+.+|||||.... .......+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF--------RSLRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH--------HHhHHHHh
Confidence 3578999999999999999999986543332222222333344555554 6789999997532 11122345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHH-HHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVL-QVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~-~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
..+|++++|+|++++........+. +++...........|+++|+||+|+.
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 6799999999998764333332222 22332222222346999999999985
No 151
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=3.6e-14 Score=134.42 Aligned_cols=114 Identities=22% Similarity=0.255 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|.+|||||||+|+|.+...... . ..+.........+.+. .+.+|||||.... .......+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~a 71 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-V-PRVLPEITIPADVTPERVPTTIVDTSSRPQD--------RANLAAEIRKA 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-C-CCcccceEeeeeecCCeEEEEEEeCCCchhh--------hHHHhhhcccC
Confidence 689999999999999999998654322 2 2233333333333333 7889999998532 11122335679
Q ss_pred CEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++++...... ..+...+..... ..|+++|+||+|+.+.
T Consensus 72 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~----~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 72 NVICLVYSVDRPSTLERIRTKWLPLIRRLGV----KVPIILVGNKSDLRDG 118 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC----CCCEEEEEEchhcccc
Confidence 999999999876443332 223344444321 3599999999999654
No 152
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.58 E-value=5.5e-14 Score=133.25 Aligned_cols=116 Identities=20% Similarity=0.183 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
..+|+++|++|||||||+++|.+..... ...|.......+.+.+..+.++||||.... .. .....+..+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~-----~~---~~~~~~~~~ 82 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRAI-----RP---YWRNYFENT 82 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHHH-----HH---HHHHHhcCC
Confidence 4789999999999999999999964321 122222333356665558999999997431 11 112234568
Q ss_pred CEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|.+++|+|++....... ...+...+... .....|+++|+||+|+...
T Consensus 83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 83 DCLIYVIDSADKKRLEEAGAELVELLEEE---KLAGVPVLVFANKQDLATA 130 (173)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECCCCccC
Confidence 99999999986422111 11222222211 1123599999999998654
No 153
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.58 E-value=1.6e-14 Score=132.82 Aligned_cols=101 Identities=22% Similarity=0.266 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|.+|+|||||+|+|++..... .++ ..+.+.. .++||||.... ....+......+..+|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~--------~~t-~~~~~~~---~~iDt~G~~~~----~~~~~~~~~~~~~~ad~ 65 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY--------KKT-QAVEYND---GAIDTPGEYVE----NRRLYSALIVTAADADV 65 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc--------ccc-eeEEEcC---eeecCchhhhh----hHHHHHHHHHHhhcCCE
Confidence 58999999999999999999874311 111 1223322 68999997321 11224444445788999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|++++..... . .++..++ .|+|+|+||+|+.+
T Consensus 66 vilv~d~~~~~s~~~-~---~~~~~~~------~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 66 IALVQSATDPESRFP-P---GFASIFV------KPVIGLVTKIDLAE 102 (142)
T ss_pred EEEEecCCCCCcCCC-h---hHHHhcc------CCeEEEEEeeccCC
Confidence 999999988743222 1 2222222 38999999999854
No 154
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.58 E-value=3.8e-14 Score=138.79 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=73.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||++++++..... ....++.+.....+.+.+. .+.++||||+..+.. .....+..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~a 71 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP-KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA--------MRKLSIQNS 71 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc-cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH--------HHHHHhhcC
Confidence 38999999999999999999865332 2222222333344555553 678999999864310 111235679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++++...+....+...+.... .....|+|+|+||+|+...
T Consensus 72 d~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 72 DAFALVYAVDDPESFEEVERLREEILEVK--EDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEEccccccc
Confidence 99999999987533333333322222221 1123699999999998653
No 155
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.58 E-value=1.2e-14 Score=164.69 Aligned_cols=113 Identities=24% Similarity=0.263 Sum_probs=82.4
Q ss_pred cCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEE
Q 007599 304 GYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVL 383 (596)
Q Consensus 304 G~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~Vv 383 (596)
|.+|+|||||+|+|+|....+.+.+++|.+...+.+.+.+..+.++||||+.+..+....+...........+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999998877888899999988888888766899999999976544332222322222234689999999
Q ss_pred eCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 384 DCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 384 Das~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|+++. +.......+. .+.+ .|+++|+||+|+.+
T Consensus 81 Dat~l--er~l~l~~ql-~~~~------~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 81 DASNL--ERNLYLTLQL-LELG------IPMILALNLVDEAE 113 (591)
T ss_pred cCCcc--hhhHHHHHHH-HhcC------CCEEEEEehhHHHH
Confidence 99864 2232222222 2233 49999999999854
No 156
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.58 E-value=5.2e-14 Score=133.90 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEE--EECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSV--VLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i--~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+|+++|.+|||||||+++++....... ...|.......+ ...++ .+.+|||||..... .+.. ..+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~~~~------~~~~ 71 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG--GLRD------GYYI 71 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc--cccH------HHhc
Confidence 689999999999999999986543221 122332222222 22333 78899999985421 1111 1245
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
.+|++++|+|++++... ..+..++..+..... ..|+|+|.||+|+.
T Consensus 72 ~~d~~i~v~d~~~~~s~---~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~ 117 (166)
T cd00877 72 GGQCAIIMFDVTSRVTY---KNVPNWHRDLVRVCG-NIPIVLCGNKVDIK 117 (166)
T ss_pred CCCEEEEEEECCCHHHH---HHHHHHHHHHHHhCC-CCcEEEEEEchhcc
Confidence 69999999999876333 333344444322111 46999999999986
No 157
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.57 E-value=8.4e-14 Score=133.17 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||++++++.... .....++.......+.+.+. .+.++||||+....+ + .......
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~--~~~~~~~ 72 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI------L--PQKYSIG 72 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH------H--HHHHHhh
Confidence 47999999999999999999986532 22223333333455555544 578999999854210 1 1123456
Q ss_pred cCEEEEEEeCCCCChHHHHHHH-HHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v-~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|.+++|+|+++....+....+ ..++...+. ...|+|+|.||+|+..
T Consensus 73 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 73 IHGYILVYSVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHT 120 (180)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhh
Confidence 8999999999875333333322 223333222 2359999999999854
No 158
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.57 E-value=5e-14 Score=133.08 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||++++.+........+....+.....+.+.+. .+.+|||+|...+ ..........+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~~~~~~~~ 73 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY--------QTITKQYYRRA 73 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH--------HhhHHHHhcCC
Confidence 5899999999999999999986543332222222333345555554 6789999997532 11122235679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++++.. ...+..++..+........|+++|.||+|+...
T Consensus 74 ~~~i~v~d~~~~~s---f~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 74 QGIFLVYDISSERS---YQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120 (161)
T ss_pred cEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 99999999987533 333444554432222234699999999998543
No 159
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.57 E-value=8.5e-14 Score=132.93 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccce-ecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFAT-LDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~T-ld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
+..+|+++|.+|+|||||++++++.......+.+++ .+.....+.+.+. .+.++||+|..... ......
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~~~~ 74 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI--------LLNDAE 74 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc--------ccchhh
Confidence 468999999999999999999998764413333322 2222345566554 67889999975431 112223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+..+|++++|+|++++ .....+..++..+.. ....|+++|+||+|+.+.
T Consensus 75 ~~~~d~~llv~d~~~~---~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 75 LAACDVACLVYDSSDP---KSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred hhcCCEEEEEEeCCCH---HHHHHHHHHHHHhcc--CCCCeEEEEEEccccccc
Confidence 4679999999999875 333344455554421 123699999999998543
No 160
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.57 E-value=1.5e-14 Score=157.41 Aligned_cols=118 Identities=21% Similarity=0.220 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc---ccccccceecCeeEEEE--------------------E------CCcee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---SDARLFATLDPRLKSVV--------------------L------PSGKV 346 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~---~~~~~f~Tld~t~~~i~--------------------l------~~~~i 346 (596)
...+|+++|+.|+|||||+++|++.... .+...+.|+........ . .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3478999999999999999999875321 11122333332211110 0 01278
Q ss_pred EeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 347 LLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 347 ~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.++||||+..+ ...+...+..+|++++|+|++++....+.......+..+++ +|+|+|+||+|+++.
T Consensus 83 ~liDtPGh~~f--------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi-----~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHETL--------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGI-----KNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHHH--------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCC-----CeEEEEEEccccCCH
Confidence 99999998543 23345556679999999999976412333333445666665 378999999999764
No 161
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.57 E-value=7.7e-14 Score=135.25 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecC--eeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDP--RLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~--t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+|+++|.+|+|||||++++++.......+. .|... ....+.+++. .+.+|||+|....- . . ....+.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--~----~--~~~~~~ 72 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQ-NTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE--A----M--SRIYYR 72 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcc-cceeeEEEEEEEEECCEEEEEEEEECCCchhhh--h----h--hHhhcC
Confidence 689999999999999999998654332222 22221 2234555554 56799999975320 1 1 112244
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++... +.+..++..+... ....|+++|+||+|+...
T Consensus 73 ~~d~iilv~d~~~~~s~---~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 73 GAKAAIVCYDLTDSSSF---ERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred CCCEEEEEEECCCHHHH---HHHHHHHHHHHhc-CCCCCEEEEEEccccccc
Confidence 69999999999875332 2233344433211 123599999999998653
No 162
>PRK12735 elongation factor Tu; Reviewed
Probab=99.57 E-value=1.7e-14 Score=156.53 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-------C---------cccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-------L---------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-------v---------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+++|++|+|||||+++|++.. . ..+...+.|++.....+...+..+.++||||+..+
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY-- 88 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH--
Confidence 45789999999999999999999621 0 11224566666554444433348999999998532
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcE-EEEEecCCCCC
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM-IEVWNKIDYHD 425 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~Pi-IvVlNKiDlv~ 425 (596)
...+...+..+|++++|+|+..+.. .+.......+...++ |. |+|+||+|+.+
T Consensus 89 ------~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~gi------~~iivvvNK~Dl~~ 142 (396)
T PRK12735 89 ------VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVGV------PYIVVFLNKCDMVD 142 (396)
T ss_pred ------HHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHcCC------CeEEEEEEecCCcc
Confidence 2344556677999999999987643 344445566666665 64 46899999975
No 163
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.57 E-value=9.3e-14 Score=133.13 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceec-CeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLD-PRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld-~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
.+|+++|..|+|||||++++.+...... . ..|+. .....+.+.+. .+.+|||||...+ .. .....+.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~-~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~------l~~~~~~ 72 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDY-H-DPTIEDAYKQQARIDNEPALLDILDTAGQAEF--TA------MRDQYMR 72 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC-c-CCcccceEEEEEEECCEEEEEEEEeCCCchhh--HH------HhHHHhh
Confidence 5799999999999999999997654321 1 12222 22234555554 6789999998542 11 1122345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|.+++|+|++++........+...+..... ....|+|+|.||+|+..
T Consensus 73 ~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 73 CGEGFIICYSVTDRHSFQEASEFKKLITRVRL--TEDIPLVLVGNKVDLES 121 (172)
T ss_pred cCCEEEEEEECCchhHHHHHHHHHHHHHHhcC--CCCCCEEEEEEChhhhh
Confidence 69999999999887554444444455555422 12369999999999864
No 164
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.57 E-value=1.2e-13 Score=133.72 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
..+|+++|..|+|||||++++...... .. ..|.......+...+-.+.+|||||.... .......+..+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~--~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~--------~~~~~~~~~~a 85 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNISFTVWDVGGQDKI--------RPLWRHYFQNT 85 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cc--cCCcceeEEEEEECCEEEEEEECCCCHHH--------HHHHHHHhccC
Confidence 368999999999999999999864432 21 23333333344444348999999997432 11122235679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCC-CcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGV-SEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi-~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++.. ...+...+..+-- ......|+++|+||+|+..
T Consensus 86 ~~iI~V~D~s~~~s---~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 86 QGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CEEEEEEeCCcHHH---HHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 99999999987532 2223333333211 1112469999999999854
No 165
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=7.7e-14 Score=138.49 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
.+|+++|.+|+|||||+++|++........+..+.+.....+.+.++ .+.+|||+|.... .......+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~ 74 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF--------RSITRSYYR 74 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH--------HHHHHHHhc
Confidence 57999999999999999999987643333322223333445555433 6889999998532 111223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC-cccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~-~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++.. ...+.+++..+... .....|+++|.||+|+...
T Consensus 75 ~~d~iilv~D~~~~~S---f~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 75 NSVGVLLVFDITNRES---FEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQ 124 (211)
T ss_pred CCcEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence 7999999999987533 33344444443211 1123478999999998653
No 166
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1e-15 Score=166.98 Aligned_cols=245 Identities=18% Similarity=0.122 Sum_probs=187.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC------------------cccccccceecCeeEEEEECCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL------------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v------------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
...+|+++-|-.||||||-++++-... ..+...+.|+......+.|.+..+.+|||||++.+
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 456899999999999999998864321 12334455665555666666559999999999875
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 436 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~ 436 (596)
. .+ . -+.++..|..+.|+|+..+ .+.+...++..+...++ |.|..+||+|+...+... .+.+..
T Consensus 118 T-~E----V---eRALrVlDGaVlvl~aV~G-VqsQt~tV~rQ~~ry~v------P~i~FiNKmDRmGa~~~~~l~~i~~ 182 (721)
T KOG0465|consen 118 T-FE----V---ERALRVLDGAVLVLDAVAG-VESQTETVWRQMKRYNV------PRICFINKMDRMGASPFRTLNQIRT 182 (721)
T ss_pred E-EE----e---hhhhhhccCeEEEEEcccc-eehhhHHHHHHHHhcCC------CeEEEEehhhhcCCChHHHHHHHHh
Confidence 2 11 1 2234458889999999876 67888889999988886 899999999999876432 122211
Q ss_pred cc------ccc-cccccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhh
Q 007599 437 DD------ISN-FSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFW 509 (596)
Q Consensus 437 ~~------~~~-~~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~ 509 (596)
.+ .+. +-+.....|+.+|+.++++-+.++.+.....+.+|+++.+.+.+.+..+++-+. ..|+++. +.|+
T Consensus 183 kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~la-d~DE~l~--e~fL 259 (721)
T KOG0465|consen 183 KLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLA-DVDETLA--EMFL 259 (721)
T ss_pred hcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHh-hhhHHHH--HHHh
Confidence 11 111 122336889999999999988887777777788999999999999999988775 4455555 7899
Q ss_pred ccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHh
Q 007599 510 NAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLK 562 (596)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~ 562 (596)
+..+++...+...++++...+.|.| |+++||..+.|++.||++|-+-|-
T Consensus 260 ee~~ps~~~l~~aIRr~Ti~r~fvP----Vl~GSAlKNkGVQPlLDAVvdYLP 308 (721)
T KOG0465|consen 260 EEEEPSAQQLKAAIRRATIKRSFVP----VLCGSALKNKGVQPLLDAVVDYLP 308 (721)
T ss_pred ccCCCCHHHHHHHHHHHHhhcceee----EEechhhcccCcchHHHHHHHhCC
Confidence 9999999999999999999999998 999999999999999999988653
No 167
>PLN03126 Elongation factor Tu; Provisional
Probab=99.56 E-value=3.3e-14 Score=157.33 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC----------------cccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v----------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+++|++|+|||||+++|++... ..+...+.|++.....+...+..+.++||||+..+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f-- 157 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY-- 157 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH--
Confidence 468899999999999999999995211 12333556666665555555558999999999643
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCCc
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDE 426 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~~ 426 (596)
...+...+..+|++++|+|+..+. ..+....+.++..+++ | +|+|+||+|+++.
T Consensus 158 ------~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~~gi------~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 158 ------VKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQVGV------PNMVVFLNKQDQVDD 212 (478)
T ss_pred ------HHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCC------CeEEEEEecccccCH
Confidence 234455666799999999998874 3445555567777776 5 7889999998763
No 168
>PRK00049 elongation factor Tu; Reviewed
Probab=99.56 E-value=2.3e-14 Score=155.52 Aligned_cols=115 Identities=18% Similarity=0.162 Sum_probs=82.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC----------------cccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v----------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+++|+.|+|||||+++|++... ..+...+.|++.....+...+..+.++||||+..+
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f-- 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH--
Confidence 457899999999999999999997310 11224566777654444433348999999998522
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEE-EEEecCCCCC
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI-EVWNKIDYHD 425 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiI-vVlNKiDlv~ 425 (596)
...+...+..+|++++|+|+..+. ..+...++..+...++ |.+ +|+||+|+++
T Consensus 89 ------~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~~g~------p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 ------VKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGV------PYIVVFLNKCDMVD 142 (396)
T ss_pred ------HHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHHcCC------CEEEEEEeecCCcc
Confidence 233445567799999999998764 3455556677777775 765 6899999975
No 169
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.56 E-value=1.5e-14 Score=147.56 Aligned_cols=127 Identities=25% Similarity=0.294 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc-cccccceecCeeEEEEECCceeEeeeccceeeccch---hhHHHH-HHhH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL---QLVDAF-HATL 370 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~---~lv~af-~~tl 370 (596)
..-.||++|.||+|||||.|.+.|..+.+ .....+|.....+.+.-..-++++.||||.+..-.+ .+..++ ....
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 45789999999999999999999998755 444555555555555443339999999999864322 222222 3345
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 371 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 371 ~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
..+..||+++.|+|++.+. ....-.++.+|+.... .|-|+|+||+|++....
T Consensus 151 ~a~q~AD~vvVv~Das~tr-~~l~p~vl~~l~~ys~-----ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATR-TPLHPRVLHMLEEYSK-----IPSILVMNKIDKLKQKR 202 (379)
T ss_pred HHHhhCCEEEEEEeccCCc-CccChHHHHHHHHHhc-----CCceeeccchhcchhhh
Confidence 6678899999999998642 2223445667776643 48899999999887653
No 170
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.56 E-value=2.8e-14 Score=154.73 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=80.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC----------------CcccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD----------------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~----------------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+++|+.|+|||||+++|++.. ...+...+.|.+.....+...+..+.++||||+..+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f-- 88 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY-- 88 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH--
Confidence 45789999999999999999998430 012233566777654444333337999999999643
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
...+...+..+|.+++|+|+..+.. .+......++...++ .++|+|+||+|+++.
T Consensus 89 ------~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~gi-----~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 89 ------VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQVGV-----PYIVVFLNKCDMVDD 143 (394)
T ss_pred ------HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCC-----CEEEEEEEecccCCH
Confidence 2334555667999999999988643 344445566666665 135578999999764
No 171
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.56 E-value=1.3e-13 Score=133.63 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
.+|+++|++|+|||||++++...... . . ..|.......+...+-.+.+|||||.... .......+..+|
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~-~-~-~~T~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~ad 86 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV-T-T-IPTIGFNVETVEYKNLKFTMWDVGGQDKL--------RPLWRHYYQNTN 86 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c-c-CCccccceEEEEECCEEEEEEECCCCHhH--------HHHHHHHhcCCC
Confidence 68999999999999999999654332 1 1 12333333445443338999999998432 111233456799
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCC
Q 007599 378 LLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 378 liL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~ 425 (596)
++++|+|++++.. ...+...+..+ .-......|+|+|+||+|+..
T Consensus 87 ~iI~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 87 GLIFVVDSNDRER---IGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred EEEEEEeCCCHHH---HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 9999999987532 22222333332 111123469999999999854
No 172
>PLN03108 Rab family protein; Provisional
Probab=99.56 E-value=7.6e-14 Score=138.27 Aligned_cols=118 Identities=20% Similarity=0.153 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+|+|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||+|..... ..+...+.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~--------~~~~~~~~ 77 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR--------SITRSYYR 77 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH--------HHHHHHhc
Confidence 468999999999999999999987654433333333333445666554 67899999985421 11233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|.+++|+|++.+..... +.+++..+........|+++|+||+|+..
T Consensus 78 ~ad~~vlv~D~~~~~s~~~---l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 78 GAAGALLVYDITRRETFNH---LASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred cCCEEEEEEECCcHHHHHH---HHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 7999999999987643333 33333332111112459999999999865
No 173
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.56 E-value=2.5e-14 Score=155.83 Aligned_cols=118 Identities=24% Similarity=0.289 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCeeEEEEE------------------C--------Ccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVL------------------P--------SGKV 346 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t~~~i~l------------------~--------~~~i 346 (596)
...+|+++|+.++|||||+.+|++... ..+...+.|++.......+ + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 457899999999999999999987421 1222345555543322111 0 1268
Q ss_pred EeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 347 LLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 347 ~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.++||||+..+ ...++..+..+|++++|+|++++....+.......+..+++ +|+++|+||+|+.+.
T Consensus 88 ~liDtPG~~~f--------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i-----~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 88 SFVDAPGHETL--------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGI-----KNIVIVQNKIDLVSK 154 (411)
T ss_pred EEEECCCHHHH--------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCC-----CcEEEEEEeeccccc
Confidence 99999998532 23345556678999999999976422333334456666654 368999999999764
No 174
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=1.2e-13 Score=131.37 Aligned_cols=120 Identities=21% Similarity=0.148 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||++++++........+..+.+.....+.+.+. .+.+|||+|...+. .. .....+..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~------~~~~~~~~ 75 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR-KS------MVQHYYRN 75 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH-Hh------hHHHhhcC
Confidence 68999999999999999999986543333332233334445566554 78899999975320 00 11122456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++........+.+.+..... ....|+|+|+||+|+...
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 76 VHAVVFVYDVTNMASFHSLPSWIEECEQHSL--PNEVPRILVGNKCDLREQ 124 (170)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhcC--CCCCCEEEEEECccchhh
Confidence 9999999999876444443333333333221 134699999999998653
No 175
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.56 E-value=2.6e-14 Score=157.16 Aligned_cols=116 Identities=22% Similarity=0.195 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-------------------------------cccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|+.++|||||+.+|+...- ..+...+.|++.....+.+.+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 457899999999999999999974210 1123345677776666666555
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCCh------HHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL------EEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~------~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.++||||+..+ ...+...+..+|.+++|+|+..+.+ ..+....+.++..+|+. ++|+|+
T Consensus 86 ~i~lIDtPGh~~f--------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~-----~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGHRDF--------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK-----QMIVCI 152 (446)
T ss_pred EEEEEECCChHHH--------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC-----eEEEEE
Confidence 8999999998643 2344555677999999999988643 24666667788888872 478999
Q ss_pred ecCCCC
Q 007599 419 NKIDYH 424 (596)
Q Consensus 419 NKiDlv 424 (596)
||+|+.
T Consensus 153 NKmD~~ 158 (446)
T PTZ00141 153 NKMDDK 158 (446)
T ss_pred Eccccc
Confidence 999954
No 176
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.56 E-value=6.9e-14 Score=131.72 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|||||||+++|++....... ..+..+.....+..++. .+.+|||||+..... . ....+..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~------~--~~~~~~~~ 72 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEY-VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR------L--RPLSYPNT 72 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeeEEEEEECCEEEEEEEEeCCCcccccc------c--chhhcCCC
Confidence 6899999999999999999987642221 12222223333444443 788999999875311 1 11123569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
|++++|+|++++.... .....++..+.... ...|+++|+||+|+......
T Consensus 73 ~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 73 DVFLICFSVDSPSSFE--NVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENT 122 (171)
T ss_pred CEEEEEEECCCHHHHH--HHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhh
Confidence 9999999998753222 22222333322211 14699999999999876543
No 177
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.55 E-value=5.6e-14 Score=135.11 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|+|||||++++..... ...+..+..+.....+.+.+. .+.+|||+|...+- ......+..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD--------RLRPLSYPQ 72 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh--------hhhhhhccc
Confidence 4799999999999999999998653 223323322323334555554 67899999986431 111223457
Q ss_pred cCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++....... .+...+.... ...|+|+|.||+|+.+.
T Consensus 73 a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 73 TDVFLVCFSVVSPSSFENVKEKWVPEITHHC----PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhC
Confidence 99999999998764333322 2222232221 23699999999998654
No 178
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.55 E-value=5.4e-14 Score=128.09 Aligned_cols=118 Identities=22% Similarity=0.167 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
++|+++|++|+|||||+|+|++........++.|.+.....+.+.+. .+.++||||+....+.. . .....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~------~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR--R------LYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH--H------HHHhh
Confidence 57999999999999999999998755555566666666655666653 68899999976542111 1 11223
Q ss_pred cCEEEEEEeCCCC-C-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAP-N-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~-~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
++.++.++|.... . ...........+..... . ..|+++|+||+|+...
T Consensus 74 ~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 74 VESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--S-NVPIILVGNKIDLRDA 123 (161)
T ss_pred hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--c-CCcEEEEEEcccCCcc
Confidence 4455555554332 0 01111011112222211 1 3599999999998653
No 179
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.55 E-value=7.7e-14 Score=135.29 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=71.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|..|+|||||++++.+........+....+.....+.+.+. .+.+|||+|...+. . .....+..+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~--~------~~~~~~~~a 73 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI--N------MLPLVCNDA 73 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH--H------hhHHHCcCC
Confidence 6899999999999999999886543221111112222345666654 68899999985421 1 111235679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++... ..+..++..+........| |+|.||+|+..
T Consensus 74 ~~iilv~D~t~~~s~---~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 74 VAILFMFDLTRKSTL---NSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred CEEEEEEECcCHHHH---HHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 999999999876333 3333444433211112235 68899999864
No 180
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.55 E-value=2.1e-13 Score=133.44 Aligned_cols=117 Identities=19% Similarity=0.117 Sum_probs=76.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|..|+|||||++++..........+..+.+.....+.+.+. .+.+|||+|...+- ......+.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~--------~l~~~~~~ 77 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC--------TIFRSYSR 77 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH--------HHHHHHhc
Confidence 478999999999999999999985432221122223333344555554 78899999985420 11123346
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++...+. +..++.++... ....|+|+|.||+|+..
T Consensus 78 ~ad~illVfD~t~~~Sf~~---~~~w~~~i~~~-~~~~piilVGNK~DL~~ 124 (189)
T cd04121 78 GAQGIILVYDITNRWSFDG---IDRWIKEIDEH-APGVPKILVGNRLHLAF 124 (189)
T ss_pred CCCEEEEEEECcCHHHHHH---HHHHHHHHHHh-CCCCCEEEEEECccchh
Confidence 7999999999988644333 34444444221 13469999999999854
No 181
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.55 E-value=1.2e-13 Score=131.00 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|||||||++++.+..... ....++.+.....+.+.+. .+.+|||||+..+. .+ .-..+..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~~~~ 72 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE-SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT--AM------RELYIKS 72 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcchheEEEEEEECCEEEEEEEEeCCCcccch--hh------hHHHHhh
Confidence 469999999999999999999765322 2212222222344555554 67899999986531 11 1122456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
++.+++|+|++++..-+....+...+... ......|+++|.||+|+...
T Consensus 73 ~~~~vlv~~~~~~~s~~~~~~~~~~i~~~--~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 73 GQGFLLVYSVTSEASLNELGELREQVLRI--KDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh--hCCCCCCEEEEEEChhcccc
Confidence 89999999998763333333222333222 11234699999999998543
No 182
>PLN03127 Elongation factor Tu; Provisional
Probab=99.55 E-value=5.4e-14 Score=154.62 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC------C----------CcccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS------D----------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~------~----------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+++|+.|+|||||+++|++. . ...+...+.|++.....+...+.++.++||||+..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f-- 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY-- 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch--
Confidence 4588999999999999999999842 1 012334677777765555544448999999999643
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCC
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 425 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~ 425 (596)
...+...+..+|++++|+|+..+. ..+...+..++..+++ | +|+|+||+|+++
T Consensus 138 ------~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~~gi------p~iIvviNKiDlv~ 191 (447)
T PLN03127 138 ------VKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGV------PSLVVFLNKVDVVD 191 (447)
T ss_pred ------HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHcCC------CeEEEEEEeeccCC
Confidence 233344556699999999998764 3445556677777775 6 578999999975
No 183
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.54 E-value=5.2e-14 Score=133.63 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|||||||++++.+.... ..+..+..+.....+.+.+. .+.+|||+|..... .+ ....+..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~--~~~~~~~ 72 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD------RL--RPLSYPD 72 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhh------hc--cccccCC
Confidence 47999999999999999999986432 22222222333345566554 67899999984321 01 1123456
Q ss_pred cCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 376 ADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+|++++|+|+++........ .+...+... ....|+++|.||+|+.+.+
T Consensus 73 ~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 73 TDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhcccCh
Confidence 89999999998653222221 122222221 1235999999999987543
No 184
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=1.3e-13 Score=132.84 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC-Cc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~-~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+|+++|.+|+|||||+++|.+.... .....++.......+... +. .+.+|||||..... ......+..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD--------RLRPLSYPD 72 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH--------HHHHHhCCC
Confidence 6899999999999999999986543 223233223333445554 33 68899999975321 111123567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++...+... ..++..+... ....|+|+|.||+|+...
T Consensus 73 ad~ii~v~d~~~~~s~~~~~--~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 73 VDVLLICYAVDNPTSLDNVE--DKWFPEVNHF-CPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred CCEEEEEEECCCHHHHHHHH--HHHHHHHHHh-CCCCCEEEEEeChhhhhC
Confidence 99999999998753322221 1233322111 123599999999998654
No 185
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.54 E-value=8.4e-14 Score=146.69 Aligned_cols=87 Identities=29% Similarity=0.393 Sum_probs=68.7
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC---------------------C-c--eeEeeecccee
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP---------------------S-G--KVLLSDTVGFI 355 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~---------------------~-~--~i~liDTpG~i 355 (596)
|+++|.+|+|||||||+|++....+.+++|+|.+|..+...+. + . ++.++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999998888999999999998876651 1 1 68999999997
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTA 387 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~ 387 (596)
.... ...+-....+..++.||+++||+|++.
T Consensus 81 ~ga~-~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAH-EGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCcc-chhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5321 111112345677889999999999974
No 186
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.54 E-value=6.4e-14 Score=158.73 Aligned_cols=114 Identities=21% Similarity=0.188 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCc----------------ccccccceecCeeEEEEECCceeEeeeccceeeccchh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ 361 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~----------------~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~ 361 (596)
++|+++||.+||||||+++|+..... .+...+.|+......+.+.+..+.++||||+..+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF---- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF---- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH----
Confidence 58999999999999999999853211 1223456777777778887669999999999643
Q ss_pred hHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 362 LVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 362 lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
. ......+..+|.+++|+|++.+. ..+...++..+...++ |+|+|+||+|+.+.
T Consensus 78 -~---~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~~i------p~IVviNKiD~~~a 131 (594)
T TIGR01394 78 -G---GEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALELGL------KPIVVINKIDRPSA 131 (594)
T ss_pred -H---HHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHCCC------CEEEEEECCCCCCc
Confidence 1 12334456799999999998764 4555666677777665 88999999998654
No 187
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.54 E-value=2.1e-13 Score=136.73 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=71.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|.+|+|||||++++.+..+.. . ..|+........+..-.+.+|||+|+..+- .+ ....+..+|+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~-~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~--~l------~~~~~~~ad~ 70 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--T-VSTVGGAFYLKQWGPYNISIWDTAGREQFH--GL------GSMYCRGAAA 70 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--C-CCccceEEEEEEeeEEEEEEEeCCCcccch--hh------HHHHhccCCE
Confidence 58999999999999999999875431 1 223322222222222278999999986431 11 1123567999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+++|+|++++.........+..+.... ....|+|+|.||+|+.+.
T Consensus 71 ~IlV~Dvt~~~Sf~~l~~~~~~l~~~~---~~~~piIlVgNK~DL~~~ 115 (220)
T cd04126 71 VILTYDVSNVQSLEELEDRFLGLTDTA---NEDCLFAVVGNKLDLTEE 115 (220)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEECcccccc
Confidence 999999987643333332222222221 223589999999999763
No 188
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=1.2e-13 Score=128.29 Aligned_cols=119 Identities=21% Similarity=0.232 Sum_probs=72.8
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCC--cccccccceecCeeEEEEECCceeEeeeccceeec-cchhhHHHHH----HhHHH
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDL--FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD-LPLQLVDAFH----ATLEE 372 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v--~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~-lp~~lv~af~----~tl~e 372 (596)
|+++|++|||||||+|.|++... ......+.|.... .+.. ++.+.++||||+... .|......+. ..+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN--FFNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE--EEEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999995332 2333333333222 1222 238899999997532 1211111121 12222
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
...++.+++|+|...+.. .....+.+++...+. |+++|+||+|+.....
T Consensus 79 ~~~~~~~~~v~d~~~~~~-~~~~~~~~~l~~~~~------~vi~v~nK~D~~~~~~ 127 (170)
T cd01876 79 RENLKGVVLLIDSRHGPT-EIDLEMLDWLEELGI------PFLVVLTKADKLKKSE 127 (170)
T ss_pred ChhhhEEEEEEEcCcCCC-HhHHHHHHHHHHcCC------CEEEEEEchhcCChHH
Confidence 234678899999876532 333445567766653 8999999999876543
No 189
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.54 E-value=1.2e-13 Score=130.34 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||++++..... ...+..++.......+.+.+. .+.+|||||....... .....+..+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~~ 72 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE-------QLERSIRWA 72 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc-------hHHHHHHhC
Confidence 389999999999999999987433 223333332233344555554 6789999998642111 122335669
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++...+....+...+..... .....|+|+|+||+|+..
T Consensus 73 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 73 DGFVLVYSITDRSSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLH 120 (165)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHH
Confidence 999999999876444444444444544321 022369999999999754
No 190
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.54 E-value=2.2e-13 Score=138.81 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|..|+|||||++++.+..... .+..++-+.....+.+.+. .+.+|||+|...+- .. ....+..+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~------~~--~~~~~~~a 72 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP------AM--RRLSILTG 72 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh------HH--HHHHhccC
Confidence 58999999999999999998754332 2222222333444555554 67899999985320 11 11234579
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCC------CcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGV------SEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi------~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|+++....+....+.+.+..... ......|+|+|+||+|+..
T Consensus 73 d~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 73 DVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 999999999875333333323233322210 1123469999999999865
No 191
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.53 E-value=1.5e-13 Score=130.91 Aligned_cols=115 Identities=26% Similarity=0.211 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|++|||||||+++|++.. . .....|.......+.+.+..+.++||||.... .......+..+|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~-~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~a~~ 69 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--P-KKVAPTVGFTPTKLRLDKYEVCIFDLGGGANF--------RGIWVNYYAEAHG 69 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--C-ccccCcccceEEEEEECCEEEEEEECCCcHHH--------HHHHHHHHcCCCE
Confidence 37999999999999999999862 1 12233444444556654448999999997432 1112334567999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCC-CcccCCcEEEEEecCCCCCcc
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGV-SEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi-~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+++|+|++++. ....+..++..+.- ......|+++|+||+|+....
T Consensus 70 ii~V~D~s~~~---s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 70 LVFVVDSSDDD---RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred EEEEEECCchh---HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 99999998753 23333344443321 112346999999999986643
No 192
>PRK10218 GTP-binding protein; Provisional
Probab=99.53 E-value=9.7e-14 Score=157.29 Aligned_cols=116 Identities=19% Similarity=0.143 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc----------------ccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~----------------~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
.+.+|+++|+.|+|||||+++|+..... .+...+.|+......+.+.+..+.+|||||+..+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~- 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG- 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH-
Confidence 5689999999999999999999963211 11234556666656666655599999999997542
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
......+..+|.+++|+|++.+. ..+...++..+...++ |.|+|+||+|+..+
T Consensus 83 -------~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~~gi------p~IVviNKiD~~~a 135 (607)
T PRK10218 83 -------GEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFAYGL------KPIVVINKVDRPGA 135 (607)
T ss_pred -------HHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHHcCC------CEEEEEECcCCCCC
Confidence 12233456799999999998764 3455556666666665 88999999998754
No 193
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.53 E-value=8.4e-14 Score=132.09 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=71.9
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
|+++|.+|+|||||++++.+...... ...+..+.....+.+.+. .+.+|||||..... . .....+..+|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~------~~~~~~~~~d 71 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED-YVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD--R------LRPLSYPDTD 71 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC-CCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc--h------hchhhcCCCC
Confidence 58999999999999999998654322 222222333334555554 68899999985431 1 1112345699
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 378 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 378 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
++++|+|++++..-+... ..++..+... ....|+|+|.||+|+...
T Consensus 72 ~~ilv~d~~~~~s~~~~~--~~~~~~i~~~-~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 72 VFLICFSVDSPASFENVK--EKWYPEVKHF-CPNTPIILVGTKLDLRED 117 (174)
T ss_pred EEEEEEECCCHHHHHHHH--HHHHHHHHhh-CCCCCEEEEecChhhhhC
Confidence 999999998753322221 1233333211 124699999999998753
No 194
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.53 E-value=3.8e-14 Score=154.28 Aligned_cols=114 Identities=22% Similarity=0.245 Sum_probs=81.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCc---------------------------------ccccccceecCeeEEEEECCce
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLF---------------------------------SDARLFATLDPRLKSVVLPSGK 345 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~---------------------------------~~~~~f~Tld~t~~~i~l~~~~ 345 (596)
+|+++|+.|||||||+++|+...-. .+...+.|++.....+.+.+..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 5899999999999999999743211 1122344566666666665558
Q ss_pred eEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 346 VLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 346 i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+.++||||+..+ ...+...+..+|++++|+|+..+.. .+....+.++..+++ +++|+|+||+|+++
T Consensus 82 ~~liDtPGh~~f--------~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~~~-----~~iivviNK~D~~~ 147 (406)
T TIGR02034 82 FIVADTPGHEQY--------TRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLLGI-----RHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEeCCCHHHH--------HHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHcCC-----CcEEEEEEeccccc
Confidence 999999998543 1233445677999999999988743 344445567777775 36899999999875
Q ss_pred c
Q 007599 426 E 426 (596)
Q Consensus 426 ~ 426 (596)
.
T Consensus 148 ~ 148 (406)
T TIGR02034 148 Y 148 (406)
T ss_pred c
Confidence 3
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.53 E-value=4.4e-14 Score=154.57 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc-------------------------------ccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-------------------------------SDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~-------------------------------~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|+.|+|||||+++|+..... .+...+.|++.....+.+.+.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 4578999999999999999999852111 112346677777766666555
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChH--HHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE--EHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~--~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
.+.+|||||+..+ ...+...+..+|++++|+|++++... .+......++..++. .|+|+|+||+|
T Consensus 86 ~i~iiDtpGh~~f--------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~-----~~iIVviNK~D 152 (426)
T TIGR00483 86 EVTIVDCPGHRDF--------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGI-----NQLIVAINKMD 152 (426)
T ss_pred EEEEEECCCHHHH--------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCC-----CeEEEEEEChh
Confidence 8999999998532 22334456679999999999886321 122222234444553 37899999999
Q ss_pred CCC
Q 007599 423 YHD 425 (596)
Q Consensus 423 lv~ 425 (596)
+.+
T Consensus 153 l~~ 155 (426)
T TIGR00483 153 SVN 155 (426)
T ss_pred ccC
Confidence 975
No 196
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.52 E-value=7.3e-14 Score=132.49 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||++++.+..... ....++.+.....+.+.+. .+.+|||||...+.. . .-.....+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~--~~~~~~~~ 72 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPE-EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR------L--RPLSYPMT 72 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc------c--ccccCCCC
Confidence 68999999999999999999865432 2222222333334555554 577999999854311 1 11124568
Q ss_pred CEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 377 DLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
|++++|+|++++...... ..+...+... ....|+++|+||+|+.+..
T Consensus 73 ~~~ilv~~~~~~~s~~~~~~~~~~~l~~~----~~~~piivv~nK~Dl~~~~ 120 (174)
T cd04135 73 DVFLICFSVVNPASFQNVKEEWVPELKEY----APNVPYLLVGTQIDLRDDP 120 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEeEchhhhcCh
Confidence 999999999876432222 1233334332 2346999999999986543
No 197
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.52 E-value=1.2e-13 Score=132.76 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|+|||||+.++...... ..+..+..+.....+.+.+. .+.+|||+|....- ......+..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD--------RLRPLSYPQ 72 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh--------hhhhhhcCC
Confidence 47999999999999999999985432 22222222222234445444 78899999975321 111223557
Q ss_pred cCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++....... .+...+... ....|+|+|.||+|+.+
T Consensus 73 ~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~----~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 73 TDVFLICFSLVSPASFENVRAKWYPEVRHH----CPNTPIILVGTKLDLRD 119 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHh----CCCCCEEEEeeChhhcc
Confidence 99999999998864333321 222333321 12369999999999864
No 198
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.51 E-value=4.9e-13 Score=133.73 Aligned_cols=115 Identities=21% Similarity=0.159 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCccccccccee--cCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL--DPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tl--d~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+|+++|.+|+|||||++++++........ ..|. +.....+.+.+. .+.+|||||.... +.. ....
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~----~~~------~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAY-DASGDDDTYERTVSVDGEESTLVVIDHWEQEMW----TED------SCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCc-CCCccccceEEEEEECCEEEEEEEEeCCCcchH----HHh------HHhh
Confidence 68999999999999999997654331221 1222 334445566554 7889999998611 111 1123
Q ss_pred -hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 -EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 -~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........+...+.... .....|+|+|+||+|+...
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~--~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNR--QLEDRPIILVGNKSDLARS 121 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEEChhcccc
Confidence 6999999999988643333333333333322 1124699999999998654
No 199
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.51 E-value=7.5e-14 Score=154.63 Aligned_cols=116 Identities=21% Similarity=0.251 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc---------------------------------cccccceecCeeEEEEEC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS---------------------------------DARLFATLDPRLKSVVLP 342 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~---------------------------------~~~~f~Tld~t~~~i~l~ 342 (596)
...+|+++|+.|||||||+++|+...-.+ +...+.|++.....+...
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 45899999999999999999998543111 112234556555555555
Q ss_pred CceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 343 SGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 343 ~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
+..+.++||||+..+ ...+...+..+|++++|+|+..+.. .+......++..+++ +|+|+|+||+|
T Consensus 106 ~~~i~~iDTPGh~~f--------~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~l~~~lg~-----~~iIvvvNKiD 171 (474)
T PRK05124 106 KRKFIIADTPGHEQY--------TRNMATGASTCDLAILLIDARKGVL-DQTRRHSFIATLLGI-----KHLVVAVNKMD 171 (474)
T ss_pred CcEEEEEECCCcHHH--------HHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHHHHHHhCC-----CceEEEEEeec
Confidence 558999999997532 1233444677999999999987643 333334456666664 37899999999
Q ss_pred CCC
Q 007599 423 YHD 425 (596)
Q Consensus 423 lv~ 425 (596)
+++
T Consensus 172 ~~~ 174 (474)
T PRK05124 172 LVD 174 (474)
T ss_pred ccc
Confidence 975
No 200
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.51 E-value=3.5e-13 Score=128.01 Aligned_cols=113 Identities=18% Similarity=0.121 Sum_probs=71.7
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEE
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLL 379 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDli 379 (596)
|+++|.+|+|||||++++.+...... + ..|.......+...+..+.+|||+|..... ......+..+|++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~-~-~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ad~i 71 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES-V-VPTTGFNSVAIPTQDAIMELLEIGGSQNLR--------KYWKRYLSGSQGL 71 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc-c-cccCCcceEEEeeCCeEEEEEECCCCcchh--------HHHHHHHhhCCEE
Confidence 78999999999999999998643222 1 122222222333333388999999985421 1122346679999
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 380 VHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 380 L~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
++|+|++++. ....+..++..+... ....|+++|.||+|+...
T Consensus 72 i~V~D~t~~~---s~~~~~~~l~~~~~~-~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 72 IFVVDSADSE---RLPLARQELHQLLQH-PPDLPLVVLANKQDLPAA 114 (164)
T ss_pred EEEEECCCHH---HHHHHHHHHHHHHhC-CCCCcEEEEEeCcCCcCC
Confidence 9999998753 222333344443211 134699999999998654
No 201
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.50 E-value=1.5e-13 Score=128.21 Aligned_cols=102 Identities=24% Similarity=0.292 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
.+|.++|++|||||||+++|.+..... ..+..+.+.+ .++||||-.-..|+. ..+.......||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~---------~KTq~i~~~~---~~IDTPGEyiE~~~~----y~aLi~ta~dad 65 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY---------KKTQAIEYYD---NTIDTPGEYIENPRF----YHALIVTAQDAD 65 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc---------CccceeEecc---cEEECChhheeCHHH----HHHHHHHHhhCC
Confidence 379999999999999999999975321 1122334432 359999964333433 222233445699
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 378 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 378 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++|.|++.+...-.- .....+ .+|+|-|+||+|+..
T Consensus 66 ~V~ll~dat~~~~~~pP----~fa~~f------~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 66 VVLLLQDATEPRSVFPP----GFASMF------NKPVIGVITKIDLPS 103 (143)
T ss_pred EEEEEecCCCCCccCCc----hhhccc------CCCEEEEEECccCcc
Confidence 99999999886321110 111222 259999999999984
No 202
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.50 E-value=2.4e-13 Score=133.12 Aligned_cols=125 Identities=21% Similarity=0.209 Sum_probs=83.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccc--cccceecCeeEEEEECCceeEeeeccceeeccc--hhhHHHHHH-hHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDA--RLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP--LQLVDAFHA-TLEEV 373 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~--~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp--~~lv~af~~-tl~e~ 373 (596)
+|+|+|.+|+|||||+|+|+|....... ..+.|.........+.+..+.++||||+..... ......+.. .....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 6999999999999999999998754333 346677777777777666999999999975421 122222211 11223
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCcccCCcEEEEEecCCCCCcc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
..+|++++|+|+.+ ....... +.+.+.. +|- ...+++|+|+|++|.+...
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~-~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQ-AVETLQELFGE--KVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHH-HHHHHHHHhCh--HhHhcEEEEEECccccCCC
Confidence 45799999999987 3344433 3444444 452 2224799999999987654
No 203
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.50 E-value=1.4e-13 Score=151.48 Aligned_cols=116 Identities=22% Similarity=0.177 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-------------------------------cccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|+.++|||||+-+|+...- ..+...+.|++.....+...+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 457899999999999999998863110 1122345566666555555545
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChH------HHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE------EHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~------~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.++||||+..+ ...+...+..+|.+++|+|+..+..+ .+....+.++..+++ +++|+|+
T Consensus 86 ~i~liDtPGh~df--------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi-----~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGHRDF--------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV-----KQMICCC 152 (447)
T ss_pred EEEEEECCCHHHH--------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCC-----CcEEEEE
Confidence 8999999999654 33445556779999999999875332 455555667777887 2578999
Q ss_pred ecCCCC
Q 007599 419 NKIDYH 424 (596)
Q Consensus 419 NKiDlv 424 (596)
||+|+.
T Consensus 153 NKmD~~ 158 (447)
T PLN00043 153 NKMDAT 158 (447)
T ss_pred EcccCC
Confidence 999986
No 204
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.50 E-value=8.2e-14 Score=159.60 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCccc---------------------------------ccccceecCeeEEEEEC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSD---------------------------------ARLFATLDPRLKSVVLP 342 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~---------------------------------~~~f~Tld~t~~~i~l~ 342 (596)
....|+++|++|||||||+++|+.....+. ...+.|++.....+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 346899999999999999999986432111 11334555555566665
Q ss_pred CceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 343 SGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 343 ~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
+.++.++||||+..+ .......+..+|++++|+|+..+.. .+......++..++. +|+|+|+||+|
T Consensus 103 ~~~~~liDtPG~~~f--------~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~~~-----~~iivvvNK~D 168 (632)
T PRK05506 103 KRKFIVADTPGHEQY--------TRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLLGI-----RHVVLAVNKMD 168 (632)
T ss_pred CceEEEEECCChHHH--------HHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHhCC-----CeEEEEEEecc
Confidence 558999999998532 1223345677999999999987643 333334456666664 37899999999
Q ss_pred CCC
Q 007599 423 YHD 425 (596)
Q Consensus 423 lv~ 425 (596)
+++
T Consensus 169 ~~~ 171 (632)
T PRK05506 169 LVD 171 (632)
T ss_pred ccc
Confidence 975
No 205
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.50 E-value=2.7e-13 Score=131.82 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|.+|+|||||++++.+...... ...+........+...+. .+.+|||+|...+- . . ....+..+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~----l--~~~~~~~a 72 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD--R----L--RSLSYADT 72 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc-cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc--c----c--ccccccCC
Confidence 689999999999999999998654322 111111222234445543 78899999985421 0 1 11134569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
|++++|+|++++...+.... .++..+... ....|+|+|.||+|+....
T Consensus 73 ~~~ilv~dv~~~~sf~~~~~--~~~~~i~~~-~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 73 DVIMLCFSVDSPDSLENVES--KWLGEIREH-CPGVKLVLVALKCDLREAR 120 (189)
T ss_pred CEEEEEEECCCHHHHHHHHH--HHHHHHHHh-CCCCCEEEEEEChhhccCh
Confidence 99999999987643332221 123332211 1246999999999997643
No 206
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.50 E-value=4.9e-13 Score=133.56 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|..|+|||||++++..........+....+.....+...+. .+.+|||+|...+. . + ....+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~----~--~~~~~ 83 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--G----L--RDGYY 83 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh--h----h--hHHHc
Confidence 4579999999999999999998765432221111111222223333443 78899999986431 1 1 11234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
..+|++++|+|++++... ..+..++..+.-. ....|+++|.||+|+.
T Consensus 84 ~~~~~~ilvfD~~~~~s~---~~i~~w~~~i~~~-~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 84 IHGQCAIIMFDVTARLTY---KNVPTWHRDLCRV-CENIPIVLCGNKVDVK 130 (219)
T ss_pred ccccEEEEEEeCCCHHHH---HHHHHHHHHHHHh-CCCCcEEEEEEchhhh
Confidence 569999999999876333 3334444443211 1236999999999984
No 207
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.50 E-value=2.3e-13 Score=154.51 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc---------------cccccceecCeeEEEEEC--C-c--eeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS---------------DARLFATLDPRLKSVVLP--S-G--KVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~---------------~~~~f~Tld~t~~~i~l~--~-~--~i~liDTpG~i 355 (596)
.+++|+++|+.|+|||||+++|+.....+ +...+.|.......+.+. + . .+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 46799999999999999999998642111 112355555555555553 3 2 78999999997
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+ .. .....+..+|++++|+|++++...+....+..++ ..+ .|+|+|+||+|+.+
T Consensus 82 dF-----~~---~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~~~------ipiIiViNKiDl~~ 136 (595)
T TIGR01393 82 DF-----SY---EVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-END------LEIIPVINKIDLPS 136 (595)
T ss_pred HH-----HH---HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-HcC------CCEEEEEECcCCCc
Confidence 53 11 1233456799999999999875444433333332 233 38999999999854
No 208
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=6.8e-13 Score=128.09 Aligned_cols=123 Identities=20% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
-..+|.|+|..|+|||.|+.++.+.............|...+.+.+.+. ++.+|||+|+.++ ...+....
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERF--------rtit~syY 79 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF--------RTITSSYY 79 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHH--------hhhhHhhc
Confidence 3589999999999999999999987654444444457888899999887 8999999999653 23356677
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+.|+.||+|.|++. ......+..|+.++.-......|.++|.||+|+.+....
T Consensus 80 R~ahGii~vyDiT~---~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v 132 (205)
T KOG0084|consen 80 RGAHGIIFVYDITK---QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVV 132 (205)
T ss_pred cCCCeEEEEEEccc---HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheec
Confidence 88999999999987 355667777888876554455699999999999876555
No 209
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.46 E-value=4e-13 Score=158.85 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc------------------eeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG------------------KVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~------------------~i~liDTpG~i~~ 357 (596)
+.+--++++| |||||.+|.+.++......+.|.+.....+.++.. .+.++||||+..+
T Consensus 464 ~~~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F 539 (1049)
T PRK14845 464 NFIANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF 539 (1049)
T ss_pred cceeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH
Confidence 4455556654 99999999999987777777777766655555421 2799999998532
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
. .........+|++++|+|++++... +.......+...+ .|+|+|+||+|+.+.+.
T Consensus 540 ~--------~lr~~g~~~aDivlLVVDa~~Gi~~-qT~e~I~~lk~~~------iPiIVViNKiDL~~~~~ 595 (1049)
T PRK14845 540 T--------SLRKRGGSLADLAVLVVDINEGFKP-QTIEAINILRQYK------TPFVVAANKIDLIPGWN 595 (1049)
T ss_pred H--------HHHHhhcccCCEEEEEEECcccCCH-hHHHHHHHHHHcC------CCEEEEEECCCCccccc
Confidence 1 1112234569999999999876433 3333445666554 38999999999976544
No 210
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.46 E-value=7.1e-13 Score=150.64 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc---------------ccccccceecCeeEEEEEC---C-c-eeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---------------SDARLFATLDPRLKSVVLP---S-G-KVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~---------------~~~~~f~Tld~t~~~i~l~---~-~-~i~liDTpG~i 355 (596)
.+++|+|+|+.++|||||+++|+..... .+...+.|+......+.+. + . .+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 5679999999999999999999763211 1123355666555555553 2 2 78999999997
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+. .. ....+..+|.+++|+|++++...+... .+..+...+ .|+|+|+||+|+..
T Consensus 86 dF~-----~~---v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~~~~~------lpiIvViNKiDl~~ 140 (600)
T PRK05433 86 DFS-----YE---VSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEND------LEIIPVLNKIDLPA 140 (600)
T ss_pred HHH-----HH---HHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHHCC------CCEEEEEECCCCCc
Confidence 531 11 223355699999999999864333322 233333333 38999999999854
No 211
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.46 E-value=8.2e-13 Score=128.83 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|..|+|||||++++....... .+..+.-+.....+.+.+. .+.+|||+|...+. .. .-..+..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~------~l--~~~~~~~ 74 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPK-EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD------RL--RTLSYPQ 74 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCc-CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhh------hh--hhhhccC
Confidence 689999999999999999999764322 2211111222223445544 68899999996431 01 1123467
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++..-+.... .++..+.-. ....|+|+|.||+|+.+.
T Consensus 75 a~~~ilvydit~~~Sf~~~~~--~w~~~i~~~-~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 75 TNVFIICFSIASPSSYENVRH--KWHPEVCHH-CPNVPILLVGTKKDLRND 122 (191)
T ss_pred CCEEEEEEECCCHHHHHHHHH--HHHHHHHhh-CCCCCEEEEEeChhhhcC
Confidence 999999999987643333221 233322111 123699999999998543
No 212
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.46 E-value=1.2e-12 Score=124.75 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|.+|+|||||++++.+... ...+..++.+.....+.+.+. .+.+|||||+..... + .-..+..+
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~--~~~~~~~a 72 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK------L--RPLCYPDT 72 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc------c--cccccCCC
Confidence 589999999999999999987543 333333333433345556554 678999999854311 1 11134579
Q ss_pred CEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++++...+.. ..+...+... ....|+++|.||+|+...
T Consensus 73 ~~~i~v~d~~~~~sf~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 73 DVFLLCFSVVNPSSFQNISEKWIPEIRKH----NPKAPIILVGTQADLRTD 119 (173)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEeeChhhccC
Confidence 999999999876433222 2222223221 123599999999998653
No 213
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.2e-13 Score=129.09 Aligned_cols=122 Identities=19% Similarity=0.099 Sum_probs=81.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+|+|..|+|||||+-++....+.....+......-+..+.+.+. ++.+|||+|+.++ +.+ .-..++
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy--~sl------apMYyR 76 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERY--HSL------APMYYR 76 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccc--ccc------ccceec
Confidence 368999999999999999998876543322211111222334555554 7889999999864 121 223467
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.|+.+|+|.|+++. +....+.+|++++.-....+.-+.+|.||+|+.+....
T Consensus 77 gA~AAivvYDit~~---~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V 128 (200)
T KOG0092|consen 77 GANAAIVVYDITDE---ESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV 128 (200)
T ss_pred CCcEEEEEEecccH---HHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc
Confidence 79999999999875 55566667777765433322335569999999875444
No 214
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=5.6e-12 Score=127.40 Aligned_cols=116 Identities=13% Similarity=0.121 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|..|+|||||++++.+..... .+..+........+.+.+. .+.+|||+|...+ . ......+.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~-~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~------~--~~~~~~~~ 83 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY------D--NVRPLCYS 83 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCC-CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh------H--HHHHHHcC
Confidence 3689999999999999999999865332 2222222222234555554 7889999998532 0 11223457
Q ss_pred hcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++..... ...+...+.... ...|+|+|.||+|+..
T Consensus 84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 131 (232)
T cd04174 84 DSDAVLLCFDISRPETVDSALKKWKAEIMDYC----PSTRILLIGCKTDLRT 131 (232)
T ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccccc
Confidence 7999999999987643332 122233333221 2358999999999854
No 215
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.45 E-value=1.7e-12 Score=140.63 Aligned_cols=88 Identities=30% Similarity=0.418 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC--------------------Cc----eeEeeeccc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP--------------------SG----KVLLSDTVG 353 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~--------------------~~----~i~liDTpG 353 (596)
..|+|||.+|+|||||||+|++....+.+++|+|++|..+.+..+ ++ .+.++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 479999999999999999999988888899999999998876531 11 578999999
Q ss_pred eeeccchhhHHHHHHhHHHHHhcCEEEEEEeCC
Q 007599 354 FISDLPLQLVDAFHATLEEVVEADLLVHVLDCT 386 (596)
Q Consensus 354 ~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas 386 (596)
++...... .+-....+..+..+|+++||+|++
T Consensus 82 l~~ga~~g-~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEG-RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccch-hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 97532111 112234567788899999999997
No 216
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.44 E-value=2.1e-12 Score=125.19 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|++|+|||||+++|....... ....++.+.....+.+.+. .+.++||+|...... + ....+..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~--~~~~~~~a 73 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER------L--RPLSYSKA 73 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChhccc------c--chhhcCCC
Confidence 79999999999999999998544322 2212222222334455544 578999999854311 0 01124568
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++......... ..++..+... ....|+|+|.||+|+.+.
T Consensus 74 ~~~llv~~i~~~~s~~~~~--~~~~~~i~~~-~~~~piilvgnK~Dl~~~ 120 (187)
T cd04129 74 HVILIGFAVDTPDSLENVR--TKWIEEVRRY-CPNVPVILVGLKKDLRQD 120 (187)
T ss_pred CEEEEEEECCCHHHHHHHH--HHHHHHHHHh-CCCCCEEEEeeChhhhhC
Confidence 9999999997653322221 1233332111 123699999999998543
No 217
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=2.1e-12 Score=124.85 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|+|||||++++.+.... ..+..+........+.+.+. .+.+|||+|...+. ......+..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~--------~~~~~~~~~ 72 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD--------NVRPLCYPD 72 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhh--------hcchhhcCC
Confidence 47999999999999999999986532 22222222222334556555 78899999985321 011223567
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++..-... ..+...+.... ...|+|+|.||+|+.+
T Consensus 73 a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~ 119 (178)
T cd04131 73 SDAVLICFDISRPETLDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRT 119 (178)
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhc
Confidence 9999999999876443332 23333333321 2359999999999854
No 218
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.43 E-value=2.6e-12 Score=124.32 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|+|||||+.++...... ..+..+.-+.....+.+.+. .+.+|||+|...+- ......+..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLRPLSYRG 72 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCcccc--------ccchhhcCC
Confidence 47999999999999999999986542 22222222223334555554 78899999986431 112224567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|.+++|+|++++..-+... ..++..+.... ...|+|+|.||+|+.+.
T Consensus 73 a~~~ilvyd~~~~~Sf~~~~--~~w~~~i~~~~-~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 73 ADVFVLAFSLISRASYENVL--KKWVPELRHYA-PNVPIVLVGTKLDLRDD 120 (176)
T ss_pred CcEEEEEEEcCCHHHHHHHH--HHHHHHHHHhC-CCCCEEEEEeChhhccC
Confidence 99999999998764433321 23333332111 23699999999999553
No 219
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.43 E-value=2.8e-12 Score=114.89 Aligned_cols=116 Identities=25% Similarity=0.215 Sum_probs=71.8
Q ss_pred EEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEE
Q 007599 302 VVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLL 379 (596)
Q Consensus 302 LVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDli 379 (596)
++|++|+|||||+|+|.+..........+..+........... .+.++||||..... .........+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~~~~~ 72 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR--------SLRRLYYRGADGI 72 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHH--------hHHHHHhcCCCEE
Confidence 5899999999999999997652222222223333333333332 88999999986431 1123345679999
Q ss_pred EEEEeCCCCChHHHHHHH-HHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 380 VHVLDCTAPNLEEHRTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 380 L~VvDas~~~~~~~~~~v-~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
++|+|++.+......... ...+... .....|+++|+||+|+.....
T Consensus 73 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~nk~D~~~~~~ 119 (157)
T cd00882 73 ILVYDVTDRESFENVKEWLLLILINK---EGENIPIILVGNKIDLPEERV 119 (157)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhh---ccCCCcEEEEEeccccccccc
Confidence 999999886433332222 1111111 223369999999999876543
No 220
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.42 E-value=4e-12 Score=125.59 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=67.9
Q ss_pred EcCCCCCHHHHHHHHHCCCCccccccccee--cCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 303 VGYTNAGKSTLVSALSDSDLFSDARLFATL--DPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 303 VG~tgAGKSTLLNaLtg~~v~~~~~~f~Tl--d~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|..|+|||||++++....... .+ ..|+ +.....+.+.+. .+.+|||+|...+ .......+..+|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-~~-~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~--------~~l~~~~~~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-KY-VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF--------GGLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-CC-CCceeEEEEEEEEEECCEEEEEEEEECCCchhh--------hhhhHHHhcCCCE
Confidence 6999999999999999654322 21 1232 222233444444 7899999998542 1112234667999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++|+|+++.........+...+.... ...|+|+|.||+|+.
T Consensus 71 ~ilV~D~t~~~S~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~ 112 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccc
Confidence 999999987643333333333233321 235999999999984
No 221
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.42 E-value=4.2e-12 Score=123.40 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=74.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|..|+|||||++++...... ..+..+........+.+.+. .+.+|||+|...+. ......+.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~--------~~~~~~~~ 75 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--------NVRPLSYP 75 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEECCEEEEEEEEECCCchhhH--------hhhhhhcC
Confidence 368999999999999999999986432 22222222222334555554 78899999985320 11122356
Q ss_pred hcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++...... ..+...+.... ...|+|+|.||+|+.+
T Consensus 76 ~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~ 123 (182)
T cd04172 76 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRT 123 (182)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhc
Confidence 79999999999876433332 23333333321 2359999999999854
No 222
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.41 E-value=2.5e-12 Score=121.88 Aligned_cols=109 Identities=16% Similarity=0.098 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|.+|+|||||++++....... ... ++.......+.+.+. .+.+|||+|.... .....+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~-~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-------------~~~~~~ 66 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ-LES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-------------QFASWV 66 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC-CCC-CCccceEEEEEECCEEEEEEEEECCCCCch-------------hHHhcC
Confidence 58999999999999999887654322 111 122223345666664 6889999999521 112458
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
|.+++|+|+++...-+....+...+.... .....|+++|.||+|+.
T Consensus 67 ~~~ilv~d~~~~~sf~~~~~~~~~i~~~~--~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 67 DAVIFVFSLENEASFQTVYNLYHQLSSYR--NISEIPLILVGTQDAIS 112 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEeeHHHhh
Confidence 99999999988644333332323332221 11335999999999974
No 223
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.41 E-value=5.6e-12 Score=126.56 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|..|+|||||++++++.... ..+..+........+.+.+. .+.+|||+|...+. ......+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~--------~l~~~~~~~ 72 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD--------NVRPLAYPD 72 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHH--------HHhHHhccC
Confidence 47899999999999999999986532 33333322333334555554 78899999985321 111223567
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++...+.. ..+...+... ....|+|+|.||+|+...
T Consensus 73 ~d~illvfdis~~~Sf~~i~~~w~~~~~~~----~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 73 SDAVLICFDISRPETLDSVLKKWQGETQEF----CPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhh----CCCCCEEEEEECcccccc
Confidence 9999999999886433332 1222222221 123599999999998653
No 224
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.40 E-value=2.4e-12 Score=127.25 Aligned_cols=120 Identities=20% Similarity=0.293 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC----CceeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP----SGKVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~----~~~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
|.|+++|++|||||||+++|.+...... .+++.+........ +..+.+|||||+... . ......+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----~---~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-----R---DKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcEeecceEEEeecCCCCceEEEEECCCCHHH-----H---HHHHHHH
Confidence 4799999999999999999998643211 11223333333332 237899999998642 1 1123334
Q ss_pred Hhc-CEEEEEEeCCCCC--hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 374 VEA-DLLVHVLDCTAPN--LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~a-DliL~VvDas~~~--~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
..+ +.+++|+|++... .......+..++..... .....|+++|.||+|+..+...
T Consensus 70 ~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a~~~ 127 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTAKPA 127 (203)
T ss_pred hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhcccCCH
Confidence 556 9999999998751 11122223333332211 1134699999999999875543
No 225
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.38 E-value=7.3e-12 Score=120.72 Aligned_cols=117 Identities=22% Similarity=0.325 Sum_probs=78.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|..|||||||+++|....... ...|.......+.+.+..+.++|..|....-+. ... .+..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~-----w~~---y~~~ 81 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPL-----WKS---YFQN 81 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETTEEEEEEEESSSGGGGGG-----GGG---GHTT
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeeeCcEEEEEEecccccccccc-----cee---eccc
Confidence 34789999999999999999998753221 233455556677776669999999998532111 111 1345
Q ss_pred cCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|.+++|+|+++.. ..+....+.++|.. ......|+++++||+|+.+.
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~---~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLND---PELKDIPILILANKQDLPDA 130 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTS---GGGTTSEEEEEEESTTSTTS
T ss_pred cceeEEEEecccceeecccccchhhhcch---hhcccceEEEEeccccccCc
Confidence 89999999998753 23333333344432 22235699999999998764
No 226
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.37 E-value=3.7e-12 Score=127.85 Aligned_cols=112 Identities=21% Similarity=0.154 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCc----------------ccccccceecCeeEEEEEC----------CceeEeeecc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLP----------SGKVLLSDTV 352 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~----------------~~~~~f~Tld~t~~~i~l~----------~~~i~liDTp 352 (596)
+|+++|+.++|||||+++|+..... .+...+.|+..+...+.+. +..+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999754311 1222344555554445554 2278899999
Q ss_pred ceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 353 GFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 353 G~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|+..+ ...+...+..+|.+++|+|+..+... +...+...+...++ |+|+|+||+|+..
T Consensus 82 G~~~f--------~~~~~~~l~~aD~~ilVvD~~~g~~~-~t~~~l~~~~~~~~------p~ilviNKiD~~~ 139 (222)
T cd01885 82 GHVDF--------SSEVTAALRLCDGALVVVDAVEGVCV-QTETVLRQALKERV------KPVLVINKIDRLI 139 (222)
T ss_pred Ccccc--------HHHHHHHHHhcCeeEEEEECCCCCCH-HHHHHHHHHHHcCC------CEEEEEECCCcch
Confidence 99754 12344556779999999999987543 33444444444443 8999999999863
No 227
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=6.4e-12 Score=133.60 Aligned_cols=241 Identities=17% Similarity=0.143 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC--CC--------------------cccccccceecCeeEEEEECCceeEeeecccee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS--DL--------------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFI 355 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~--~v--------------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i 355 (596)
++.||+-||.||||||-..|+-. .+ .++...+.++..++..+.+.+..+.|.|||||.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 47999999999999999888621 11 144556667777778888887799999999997
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYI 434 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~ 434 (596)
.+ .+ .|++.+..+|.++.|+|+..+ .+.++..+.++++.-++ |++-++||+|+...+... .+++
T Consensus 93 DF-----SE---DTYRtLtAvDsAvMVIDaAKG-iE~qT~KLfeVcrlR~i------PI~TFiNKlDR~~rdP~ELLdEi 157 (528)
T COG4108 93 DF-----SE---DTYRTLTAVDSAVMVIDAAKG-IEPQTLKLFEVCRLRDI------PIFTFINKLDREGRDPLELLDEI 157 (528)
T ss_pred cc-----ch---hHHHHHHhhheeeEEEecccC-ccHHHHHHHHHHhhcCC------ceEEEeeccccccCChHHHHHHH
Confidence 54 22 245555569999999999987 56676666676665555 999999999998766442 3333
Q ss_pred cccc----cccccc---ccccCCCccccccccccCCCCCCCCCCC-CCCccchhhhhhcc-----ccccchhhhc-cCCC
Q 007599 435 DGDD----ISNFSR---AEDKDTTSEPVDVECIDNYGGDDADNND-GFVSEDLGESMNKN-----HNDYSDGWLL-SGDE 500 (596)
Q Consensus 435 ~~~~----~~~~~s---a~~~~gi~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~e~~~~-e~d~ 500 (596)
...+ ....++ .+...|+-.+.+.....|.......... ..........++.. .+++.+.+-. .+.-
T Consensus 158 E~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~ 237 (528)
T COG4108 158 EEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAG 237 (528)
T ss_pred HHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhc
Confidence 3333 122233 3356777777666555443321111110 00000000011111 1111111100 1111
Q ss_pred CCCchhhhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhhcccccCCCCcccc
Q 007599 501 QDNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKTLDDKQKSPNVVER 576 (596)
Q Consensus 501 ~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~~~~~~~~~~~~~~ 576 (596)
..+..+.|+ .|+. .||+-+||+++.|++.||+.+-+-+-.=.........+|.
T Consensus 238 ~~Fd~~~fl-------------------~G~~----TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p 290 (528)
T COG4108 238 NEFDLEAFL-------------------AGEL----TPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEP 290 (528)
T ss_pred cccCHHHHh-------------------cCCc----cceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccC
Confidence 111123333 3444 4599999999999999999998876553333333334443
No 228
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.37 E-value=8.3e-12 Score=134.38 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCee
Q 007599 257 QRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL 336 (596)
Q Consensus 257 ~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~ 336 (596)
..+....|+..+.+++...-...++.|+.-. +.+..+...+++.|+|++|+||||++|.++..++.+.++.|+|....+
T Consensus 129 lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~-rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~v 207 (620)
T KOG1490|consen 129 LKRAALGRMATIIKRQKSSLEYLEQVRQHLS-RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLV 207 (620)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhh
Confidence 3344444444443333332222233333222 234466678999999999999999999999999999999999999988
Q ss_pred EEEEECCceeEeeeccceeeccch---hhHHHHH-HhHHHHHhcCEEEEEEeCCCCC---hHHHHHHHHHHHHHcCCCcc
Q 007599 337 KSVVLPSGKVLLSDTVGFISDLPL---QLVDAFH-ATLEEVVEADLLVHVLDCTAPN---LEEHRTTVLQVLQQVGVSEE 409 (596)
Q Consensus 337 ~~i~l~~~~i~liDTpG~i~~lp~---~lv~af~-~tl~e~~~aDliL~VvDas~~~---~~~~~~~v~~iL~~lgi~~~ 409 (596)
+++.+.--.++++||||+... |. +.++... ..+.++. ..|||++|.|..+ ..+|.. +..-++.+-
T Consensus 208 GH~dykYlrwQViDTPGILD~-plEdrN~IEmqsITALAHLr--aaVLYfmDLSe~CGySva~Qvk-LfhsIKpLF---- 279 (620)
T KOG1490|consen 208 GHLDYKYLRWQVIDTPGILDR-PEEDRNIIEMQIITALAHLR--SAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLF---- 279 (620)
T ss_pred hhhhhheeeeeecCCccccCc-chhhhhHHHHHHHHHHHHhh--hhheeeeechhhhCCCHHHHHH-HHHHhHHHh----
Confidence 888776668999999999754 22 2222222 2233333 2588999998742 233332 223333322
Q ss_pred cCCcEEEEEecCCCCCcccc
Q 007599 410 KLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 410 ~~~PiIvVlNKiDlv~~~~~ 429 (596)
.++|+|+|+||||....+..
T Consensus 280 aNK~~IlvlNK~D~m~~edL 299 (620)
T KOG1490|consen 280 ANKVTILVLNKIDAMRPEDL 299 (620)
T ss_pred cCCceEEEeecccccCcccc
Confidence 23699999999999887766
No 229
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.36 E-value=1.5e-11 Score=115.05 Aligned_cols=116 Identities=22% Similarity=0.233 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|+++|..|+|||||++++.+........+....+.....+...+. .+.+|||+|.... .... ......+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~------~~~~--~~~~~~~ 72 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF------DSLR--DIFYRNS 72 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG------HHHH--HHHHTTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc------cccc--ccccccc
Confidence 5899999999999999999986543322222123444555666555 7889999997543 1111 1235679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|.+++ .....+..++..+........|+++|.||+|+.+
T Consensus 73 ~~~ii~fd~~~~---~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 73 DAIIIVFDVTDE---ESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp SEEEEEEETTBH---HHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccc---ccccccccccccccccccccccceeeeccccccc
Confidence 999999999775 3444444555544321122359999999999866
No 230
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.2e-12 Score=140.03 Aligned_cols=118 Identities=20% Similarity=0.270 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC---------------CcccccccceecCeeEEEEECCc---eeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD---------------LFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~---------------v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~ 357 (596)
++++++||-|..+|||||..+|+... ...+-..+.|+...+..+.+.++ .+.+||||||..+
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 56789999999999999999997432 12455678898888888888874 7889999999864
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
. ...... +..||.+++|||++.+. ..|+.......-+.++ .+|.|+||+|+..++.
T Consensus 139 s-----~EVsRs---laac~G~lLvVDA~qGv-qAQT~anf~lAfe~~L------~iIpVlNKIDlp~adp 194 (650)
T KOG0462|consen 139 S-----GEVSRS---LAACDGALLVVDASQGV-QAQTVANFYLAFEAGL------AIIPVLNKIDLPSADP 194 (650)
T ss_pred c-----ceeheh---hhhcCceEEEEEcCcCc-hHHHHHHHHHHHHcCC------eEEEeeeccCCCCCCH
Confidence 1 222222 33499999999999984 4444433333334555 6899999999987753
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.35 E-value=1.3e-11 Score=121.16 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=68.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCccccccc-ceecCee--EEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLF-ATLDPRL--KSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f-~Tld~t~--~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..|+++|.+|+|||||+|+|+|.......... .....+. ..+..+.. .+.++||||+..... . .+.+.. ...+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~-~-~~~~l~-~~~~ 78 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAF-P-PDDYLE-EMKF 78 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccC-C-HHHHHH-HhCc
Confidence 57999999999999999999996432111100 0011111 11221222 789999999854211 1 111111 1124
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|.|. + .......+.+.+...+ +|+++|+||+|+...
T Consensus 79 ~~~d~~l~v~~~--~-~~~~d~~~~~~l~~~~------~~~ilV~nK~D~~~~ 122 (197)
T cd04104 79 SEYDFFIIISST--R-FSSNDVKLAKAIQCMG------KKFYFVRTKVDRDLS 122 (197)
T ss_pred cCcCEEEEEeCC--C-CCHHHHHHHHHHHHhC------CCEEEEEecccchhh
Confidence 468888887543 2 2334445556666654 489999999999654
No 232
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.4e-11 Score=118.81 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=87.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHH-hHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~-tl~e~ 373 (596)
..+|+++|..++|||||+++++-..+...-.....+|.-...+.+.+. .+.+|||+|+.+ |++ .-..+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQER---------FrslipsY~ 92 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 92 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHH---------Hhhhhhhhc
Confidence 368999999999999999999986655544555557777788888887 889999999965 433 23356
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccc-CCcEEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEK-LKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~-~~PiIvVlNKiDlv~~~~~ 429 (596)
+++.+++.|.|+++...-++. .+||+.+.-.... ..-+++|.||.||.+..+.
T Consensus 93 Rds~vaviVyDit~~~Sfe~t---~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv 146 (221)
T KOG0094|consen 93 RDSSVAVIVYDITDRNSFENT---SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV 146 (221)
T ss_pred cCCeEEEEEEeccccchHHHH---HHHHHHHHhccCCCceEEEEEcccccccchhhh
Confidence 789999999999876444433 3444443222222 1357889999999987655
No 233
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3.1e-11 Score=118.03 Aligned_cols=123 Identities=20% Similarity=0.139 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|.++|.+|+|||+|+-++..............++.....+.+++. .+.+|||.|+.++ ...+-..+
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf--------~ti~~sYy 82 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERF--------RTITTAYY 82 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhH--------HHHHHHHH
Confidence 3578999999999999999999987544433333447888889999887 7899999999653 23355567
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+.|+.+++|+|++.. ...+.+..|++.+........|.++|.||+|+......
T Consensus 83 rgA~gi~LvyDitne---~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V 135 (207)
T KOG0078|consen 83 RGAMGILLVYDITNE---KSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQV 135 (207)
T ss_pred hhcCeeEEEEEccch---HHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccc
Confidence 789999999999874 44455555666665444445799999999998774443
No 234
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.30 E-value=1.9e-11 Score=120.19 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCCHHHHHH-HHHCCCC----ccccccccee---cCeeEE--------EEECCc--eeEeeeccceeeccc
Q 007599 298 ATVAVVGYTNAGKSTLVS-ALSDSDL----FSDARLFATL---DPRLKS--------VVLPSG--KVLLSDTVGFISDLP 359 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLN-aLtg~~v----~~~~~~f~Tl---d~t~~~--------i~l~~~--~i~liDTpG~i~~lp 359 (596)
.+|+++|..|+|||||++ ++.+... ....+. .|+ +..... +.+.+. .+.+|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~-pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHV-PTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccC-CceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 579999999999999996 5554321 111111 122 111111 133443 7889999998532
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+. ...+..+|++++|+|++++..-.... .+...+.... ...|+|+|.||+|+..
T Consensus 80 ------~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 ------DR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRY 134 (195)
T ss_pred ------hh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccc
Confidence 11 11356799999999998764433332 2223333321 2359999999999865
No 235
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.30 E-value=1.1e-10 Score=115.59 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEE--EECCc--eeEeeeccceeeccchhhHHHHHHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSV--VLPSG--KVLLSDTVGFISDLPLQLVDAFHATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i--~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~ 371 (596)
...+|+++|++|||||||++++....... ....|........ ...++ .+.+|||+|...+ .. . ...
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--~~----~--~~~ 77 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEK--KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--GG----L--RDG 77 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCeEEEEEEEECCCchhh--hh----h--hHH
Confidence 34789999999999999997654432211 1122333333332 23333 7889999997532 11 1 112
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
....++.+++|+|+++... ...+..++..+.-. ....|+++|+||+|+.+
T Consensus 78 ~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRIT---YKNVPNWHRDIVRV-CENIPIVLVGNKVDVKD 127 (215)
T ss_pred HhccCCEEEEEEECcCHHH---HHHHHHHHHHHHHh-CCCCCEEEEEECccCcc
Confidence 2446899999999987533 23333333332110 12358999999999753
No 236
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.30 E-value=6e-11 Score=111.53 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
.+|.++|..||||||++++|.+... +..-.|.-....++.+++-.+.+||.-|+.. +....+..+ ..+|
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~-----lr~~W~nYf---estd 85 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEYKGYTLNIWDVGGQKT-----LRSYWKNYF---ESTD 85 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEecceEEEEEEcCCcch-----hHHHHHHhh---hccC
Confidence 6899999999999999999999752 2223345555667777777999999988853 222233332 3489
Q ss_pred EEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 378 LLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 378 liL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+++|+|.+++. +.+....+.+.|.+-.+ ...|++++.||.|+..+
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerl---aG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERL---AGAPLLVLANKQDLPGA 132 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhh---cCCceEEEEecCcCccc
Confidence 999999998763 23333444444443222 23589999999998743
No 237
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.29 E-value=2.2e-11 Score=120.86 Aligned_cols=113 Identities=21% Similarity=0.199 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCccc-------------------ccccceecCeeEEEEECC----c-eeEeeeccce
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSD-------------------ARLFATLDPRLKSVVLPS----G-KVLLSDTVGF 354 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~-------------------~~~f~Tld~t~~~i~l~~----~-~i~liDTpG~ 354 (596)
+|+++|+.|+|||||+++|+....... ...+.|.......+.+.+ . .+.++||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987432211 112334444444443332 2 7899999999
Q ss_pred eeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 355 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 355 i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+ ...+...+..+|++++|+|++++.... ...+...+...+ .|+++|+||+|++..
T Consensus 82 ~~f--------~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~~------~p~iiviNK~D~~~~ 138 (213)
T cd04167 82 VNF--------MDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILEG------LPIVLVINKIDRLIL 138 (213)
T ss_pred cch--------HHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHcC------CCEEEEEECcccCcc
Confidence 753 122345566799999999998764332 223333333222 489999999998743
No 238
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.6e-11 Score=130.48 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=86.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-------------------------------CcccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-------------------------------LFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-------------------------------v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+++++||++||||||+-+|+-.. ...+-..+.|++.....+..+..
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 45789999999999999999986321 11344557777777666666544
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCC------hHHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN------LEEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~------~~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.++|+||+..+ +..+...+..||+.++|||++.+. ...|.....-+...+|+. .+|+++
T Consensus 86 ~~tIiDaPGHrdF--------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~-----~lIVav 152 (428)
T COG5256 86 NFTIIDAPGHRDF--------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK-----QLIVAV 152 (428)
T ss_pred eEEEeeCCchHHH--------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc-----eEEEEE
Confidence 8999999997543 455566677899999999999873 233333333456667864 589999
Q ss_pred ecCCCCCc
Q 007599 419 NKIDYHDE 426 (596)
Q Consensus 419 NKiDlv~~ 426 (596)
||+|.++.
T Consensus 153 NKMD~v~w 160 (428)
T COG5256 153 NKMDLVSW 160 (428)
T ss_pred Eccccccc
Confidence 99999883
No 239
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.8e-11 Score=115.02 Aligned_cols=121 Identities=21% Similarity=0.171 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHH-hHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~-tl~e~ 373 (596)
..++.++|.+|+|||.||.+++...+.+.......++...+.+.+.+. ++.+|||.|+.+ |++ +-..+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~---------frsv~~syY 76 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQES---------FRSVTRSYY 76 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHH---------HHHHHHHHh
Confidence 478999999999999999999997755544444456667778888776 889999999954 333 44556
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+.|-.+|+|.|+... +...++..||.++.-....+.-++++.||+||......
T Consensus 77 r~a~GalLVydit~r---~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~V 129 (216)
T KOG0098|consen 77 RGAAGALLVYDITRR---ESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREV 129 (216)
T ss_pred ccCcceEEEEEccch---hhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccc
Confidence 778899999999764 55666667777765433334468889999999776544
No 240
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.1e-11 Score=130.44 Aligned_cols=116 Identities=23% Similarity=0.232 Sum_probs=94.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCC---CcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSD---LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~---v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+|+..|+..+|||||+++++|.. .......+.|+|.........++.+.++|+||+..+ ....+..+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~--------i~~miag~~~ 73 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF--------ISNLLAGLGG 73 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH--------HHHHHhhhcC
Confidence 68999999999999999999965 345677899999988888887778999999999643 4455666677
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.|.+++|||+.++.. .+.-....+|+.+|+. ..|+|+||+|++++..
T Consensus 74 ~d~alLvV~~deGl~-~qtgEhL~iLdllgi~-----~giivltk~D~~d~~r 120 (447)
T COG3276 74 IDYALLVVAADEGLM-AQTGEHLLILDLLGIK-----NGIIVLTKADRVDEAR 120 (447)
T ss_pred CceEEEEEeCccCcc-hhhHHHHHHHHhcCCC-----ceEEEEeccccccHHH
Confidence 999999999987754 4444455889999984 4699999999987643
No 241
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.25 E-value=3.4e-11 Score=124.39 Aligned_cols=86 Identities=27% Similarity=0.443 Sum_probs=70.5
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-----------------eeEeeeccceeeccchhh
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-----------------KVLLSDTVGFISDLPLQL 362 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-----------------~i~liDTpG~i~~lp~~l 362 (596)
|+|||.+|+|||||||+|++....+.+++|+|+++..+.+.+++. .+.++||||++......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~- 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG- 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh-
Confidence 589999999999999999999998899999999999999988764 38999999998643221
Q ss_pred HHHHHHhHHHHHhcCEEEEEEeCC
Q 007599 363 VDAFHATLEEVVEADLLVHVLDCT 386 (596)
Q Consensus 363 v~af~~tl~e~~~aDliL~VvDas 386 (596)
.+-....+..+..+|+++||||+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 111234466778899999999985
No 242
>PTZ00258 GTP-binding protein; Provisional
Probab=99.25 E-value=4.7e-11 Score=128.68 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-----------------eeEeeeccceeecc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-----------------KVLLSDTVGFISDL 358 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-----------------~i~liDTpG~i~~l 358 (596)
+...|+|||.||+|||||||+|++..+.+.+++|+|++|..+.+.+++. ++.++||||++...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 4578999999999999999999999999999999999999999887642 48999999998543
Q ss_pred chhhHHHHHHhHHHHHhcCEEEEEEeCC
Q 007599 359 PLQLVDAFHATLEEVVEADLLVHVLDCT 386 (596)
Q Consensus 359 p~~lv~af~~tl~e~~~aDliL~VvDas 386 (596)
... .......+..+..+|+++||+|+.
T Consensus 100 ~~g-~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEG-EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cch-hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 221 111234566778899999999985
No 243
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.24 E-value=2.5e-11 Score=108.13 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcc--cccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFS--DARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~--~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+|+|+|..|+|||||+++|.+..... .................... .+.++|++|........ ...+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--------QFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--------HHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--------cchhh
Confidence 48999999999999999999875431 11111111111122333333 57899999985431111 11155
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
.+|++++|+|++++........+..+|..+.-. ....|+|+|.||.|
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 699999999998764344444444455555321 12259999999998
No 244
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.22 E-value=3.4e-10 Score=115.67 Aligned_cols=132 Identities=19% Similarity=0.123 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeeccchh-hHHH-HHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ-LVDA-FHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~-lv~a-f~~tl~e 372 (596)
...+|+|+|.+|+|||||+|+|+|.... +......|...........+..+.++||||+....... .... .......
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 4589999999999999999999998753 33344456555544444444489999999997542111 1111 1111111
Q ss_pred H--HhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCcccCCcEEEEEecCCCCCcccc
Q 007599 373 V--VEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 373 ~--~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+ ...|++++|..++..........+.+.+.+ +|.. ...++|+|+||+|...++..
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCCCCC
Confidence 1 257889888766543322332333444443 5521 12479999999999876544
No 245
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.22 E-value=8.1e-11 Score=119.48 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=88.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
...+|.++|.||||||||+|+|.+.++...+..+++.+++.+....-++ .+.+|||||+......+- +-.....+.+.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~-~~r~~~~d~l~ 116 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA-EHRQLYRDYLP 116 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH-HHHHHHHHHhh
Confidence 3466779999999999999999987776666667777776655444444 899999999965322220 11122344556
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..|++++++|+.++...-....+.+++.... . +++|+|+|.+|+..+
T Consensus 117 ~~DLvL~l~~~~draL~~d~~f~~dVi~~~~-~----~~~i~~VtQ~D~a~p 163 (296)
T COG3596 117 KLDLVLWLIKADDRALGTDEDFLRDVIILGL-D----KRVLFVVTQADRAEP 163 (296)
T ss_pred hccEEEEeccCCCccccCCHHHHHHHHHhcc-C----ceeEEEEehhhhhcc
Confidence 6999999999988765555566666654432 1 489999999998654
No 246
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=2.5e-11 Score=130.12 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC---------------CcccccccceecCeeEEEEECC--c---eeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD---------------LFSDARLFATLDPRLKSVVLPS--G---KVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~---------------v~~~~~~f~Tld~t~~~i~l~~--~---~i~liDTpG~i 355 (596)
++++++++-|..+|||||-.+|.... ...+...+.|+....-.+.+.. + .+.++|||||+
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 56789999999999999999997532 1245566788877776666653 2 67899999998
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.+. .+ ...+ +..|..+++|||++.+.-.+....+.-.++ .++ -+|-|+||+||..++.
T Consensus 88 DFs-YE----VSRS---LAACEGalLvVDAsQGveAQTlAN~YlAle-~~L------eIiPViNKIDLP~Adp 145 (603)
T COG0481 88 DFS-YE----VSRS---LAACEGALLVVDASQGVEAQTLANVYLALE-NNL------EIIPVLNKIDLPAADP 145 (603)
T ss_pred ceE-EE----ehhh---HhhCCCcEEEEECccchHHHHHHHHHHHHH-cCc------EEEEeeecccCCCCCH
Confidence 651 11 1222 334889999999998743333333332222 222 5899999999988764
No 247
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=111.12 Aligned_cols=124 Identities=21% Similarity=0.179 Sum_probs=84.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|.++|.+|+|||||+|.+...............+.....+.+.+. .+++|||+|+.++ +.+ ...-+
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERF--qsL------g~aFY 79 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERF--QSL------GVAFY 79 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHh--hhc------cccee
Confidence 5789999999999999999999886543222222234556667777766 7889999999754 122 12335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHH-HHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVL-QVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~-~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+.||..++|.|+..+...+....+. +.|..........=|+|++.||+|+....
T Consensus 80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~ 134 (210)
T KOG0394|consen 80 RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK 134 (210)
T ss_pred cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc
Confidence 6799999999998764433333322 23444443333345899999999986654
No 248
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.20 E-value=1.2e-10 Score=124.26 Aligned_cols=88 Identities=27% Similarity=0.432 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-----------------eeEeeeccceeeccch
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-----------------KVLLSDTVGFISDLPL 360 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-----------------~i~liDTpG~i~~lp~ 360 (596)
..|+|||.||+|||||||+|++....+.+++|+|++|..+.+.+++. .+.++||||++.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 57999999999999999999999888899999999999988887763 4899999999854222
Q ss_pred hhHHHHHHhHHHHHhcCEEEEEEeCC
Q 007599 361 QLVDAFHATLEEVVEADLLVHVLDCT 386 (596)
Q Consensus 361 ~lv~af~~tl~e~~~aDliL~VvDas 386 (596)
. ..-....+..+..+|+++||||+.
T Consensus 83 g-~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 G-EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred H-HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 122234577788899999999985
No 249
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.19 E-value=2.8e-10 Score=112.72 Aligned_cols=118 Identities=18% Similarity=0.093 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC-----Cc--eeEeeeccceeeccchhhHHHHHHhHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-----SG--KVLLSDTVGFISDLPLQLVDAFHATLE 371 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~-----~~--~i~liDTpG~i~~lp~~lv~af~~tl~ 371 (596)
+|+++|.+|+|||||++++.+........+....+.....+.+. +. .+.+|||+|...+ ......
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l~~~ 73 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KSTRAV 73 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHHHHH
Confidence 68999999999999999999865433222211122233344443 22 6789999998543 111223
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC-------------------CcccCCcEEEEEecCCCCCcc
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV-------------------SEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi-------------------~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+..+|++++|+|++++...+. +..|+.++.. ......|+|+|.||+|+.+..
T Consensus 74 ~yr~ad~iIlVyDvtn~~Sf~~---l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 74 FYNQVNGIILVHDLTNRKSSQN---LQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred HhCcCCEEEEEEECcChHHHHH---HHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 3567999999999998644433 3344443311 011246999999999997653
No 250
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=6.3e-11 Score=115.68 Aligned_cols=119 Identities=19% Similarity=0.142 Sum_probs=96.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
.++|+++|.+|+|||-|+.+++..++..++.........++.+.+.+. +.+||||+|+.++ -..+-...+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy--------rAitSaYYr 85 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY--------RAITSAYYR 85 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhh--------ccccchhhc
Confidence 578999999999999999999998888888777778888888888877 8899999999764 122344566
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.|-.+++|.|++.. ...+.+..||.++.-......++++|.||+||..-
T Consensus 86 gAvGAllVYDITr~---~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l 134 (222)
T KOG0087|consen 86 GAVGALLVYDITRR---QTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL 134 (222)
T ss_pred ccceeEEEEechhH---HHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence 78889999999764 45567778888886655556789999999999763
No 251
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=4.4e-11 Score=123.08 Aligned_cols=121 Identities=25% Similarity=0.265 Sum_probs=82.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCe-----e---------------EEEEECC------cee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPR-----L---------------KSVVLPS------GKV 346 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t-----~---------------~~i~l~~------~~i 346 (596)
...+|+++||..+|||||.++|+|-.. ..+-..+.|+... . ......+ ..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 457999999999999999999998531 1111122221110 0 0011111 156
Q ss_pred EeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 347 LLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 347 ~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.|+|.||+.- + ....+......|.+++|++++.|..+.|...-+-.|+-+|+ +.+|+|-||+|+++.
T Consensus 89 SfVDaPGHe~-----L---MATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi-----k~iiIvQNKIDlV~~ 155 (415)
T COG5257 89 SFVDAPGHET-----L---MATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI-----KNIIIVQNKIDLVSR 155 (415)
T ss_pred EEeeCCchHH-----H---HHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc-----ceEEEEecccceecH
Confidence 7999999942 1 23345566668999999999998776776666677888887 469999999999998
Q ss_pred ccc
Q 007599 427 EMG 429 (596)
Q Consensus 427 ~~~ 429 (596)
+.+
T Consensus 156 E~A 158 (415)
T COG5257 156 ERA 158 (415)
T ss_pred HHH
Confidence 766
No 252
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.17 E-value=3.2e-10 Score=120.13 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.1
Q ss_pred CCEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 537 APDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 537 ~~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
.||+++||.+|.||++|++.|.++++-+
T Consensus 235 ~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 235 PPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999999987743
No 253
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.17 E-value=4.8e-11 Score=119.06 Aligned_cols=124 Identities=27% Similarity=0.318 Sum_probs=99.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 294 GRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 294 ~~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
+.|...|+++|+|.+|||||+..|++..-....+.|+|+....+.+.+++..+++.|.||+|+...+. .+..+......
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqg-kGRGRQviavA 137 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQG-KGRGRQVIAVA 137 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccC-CCCCceEEEEe
Confidence 35678999999999999999999999888888999999999999999988899999999998653222 11122333344
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEec
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 420 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNK 420 (596)
+.||++++|+|++.. +.+...+...|+.+|+...+.+|-|.+--|
T Consensus 138 rtaDlilMvLDatk~--e~qr~~le~ELe~vGiRLNk~~Pniy~k~k 182 (364)
T KOG1486|consen 138 RTADLILMVLDATKS--EDQREILEKELEAVGIRLNKRKPNIYFKKK 182 (364)
T ss_pred ecccEEEEEecCCcc--hhHHHHHHHHHHHhceeccCCCCCeEEEee
Confidence 569999999999875 677778888999999987777777665443
No 254
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.16 E-value=5.2e-10 Score=113.51 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCe----------------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR---------------------------------------- 335 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t---------------------------------------- 335 (596)
..|.++++|++||||||++++|+|..+........|..|+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999997422111111111110
Q ss_pred ---------eEEEEE--CCc-eeEeeeccceeec----cchhhHHHHHH-hHHHHH-hcCEEEEEEeCCCCChHHHHHHH
Q 007599 336 ---------LKSVVL--PSG-KVLLSDTVGFISD----LPLQLVDAFHA-TLEEVV-EADLLVHVLDCTAPNLEEHRTTV 397 (596)
Q Consensus 336 ---------~~~i~l--~~~-~i~liDTpG~i~~----lp~~lv~af~~-tl~e~~-~aDliL~VvDas~~~~~~~~~~v 397 (596)
.-.+.+ ++. .+.++||||+... .+..+...+.. +...+. ..+++++|+|+...........+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 001222 222 6789999999742 12333333333 444455 34699999998765333332344
Q ss_pred HHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 398 LQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 398 ~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+.+...+ +|.|+|+||+|..+..
T Consensus 185 a~~ld~~~------~rti~ViTK~D~~~~~ 208 (240)
T smart00053 185 AKEVDPQG------ERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHcC------CcEEEEEECCCCCCcc
Confidence 44454444 4899999999998653
No 255
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.16 E-value=1e-10 Score=138.13 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc----------------ccccccceecCeeEEEEEC---------------Cc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLP---------------SG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~----------------~~~~~f~Tld~t~~~i~l~---------------~~ 344 (596)
.+++|+|+|+.|+|||||+++|+..... .+...+.|+......+.+. .+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 5789999999999999999999854311 1222344555444455552 12
Q ss_pred -eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 345 -KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 345 -~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
.+.++||||+..+ ...+...+..+|.+++|+|+..+. ..+...++..+...++ |+|+++||+|+
T Consensus 98 ~~inliDtPGh~dF--------~~e~~~al~~~D~ailVvda~~Gv-~~~t~~~~~~~~~~~~------p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI------RPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHHH--------HHHHHHHHhhcCEEEEEEECCCCC-cccHHHHHHHHHHCCC------CEEEEEECCcc
Confidence 6889999999753 233345567799999999999874 4556666676666664 89999999999
Q ss_pred C
Q 007599 424 H 424 (596)
Q Consensus 424 v 424 (596)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 8
No 256
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.15 E-value=1.3e-09 Score=107.50 Aligned_cols=120 Identities=23% Similarity=0.182 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC--c-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS--G-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~--~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
.+|+++|..|||||||+++|.+........+..+.. ......... . ++.+|||+|+.+. -...-....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~~Dt~gq~~~--------~~~~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNL-DPAKTIEPYRRNIKLQLWDTAGQEEY--------RSLRPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeee-eEEEEEEeCCCEEEEEeecCCCHHHH--------HHHHHHHhc
Confidence 689999999999999999999975443333222222 222222222 2 6889999999642 111223446
Q ss_pred hcCEEEEEEeCCC-CChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 375 EADLLVHVLDCTA-PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 375 ~aDliL~VvDas~-~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.++.+++|+|... ....+....+...+....- ...|+|+|.||+|+......
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAP---DDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCC---CCceEEEEecccccccchhH
Confidence 7999999999876 3344444444444444332 22499999999999876543
No 257
>PTZ00416 elongation factor 2; Provisional
Probab=99.15 E-value=1.4e-10 Score=136.65 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=81.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc----------------ccccccceecCeeEEEEEC----------CceeEee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLP----------SGKVLLS 349 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~----------------~~~~~f~Tld~t~~~i~l~----------~~~i~li 349 (596)
.+++|+++|+.|+|||||+++|+..... .+...+.|+..+...+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 4679999999999999999999864311 1222344555444445554 2268999
Q ss_pred eccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 350 DTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 350 DTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
||||+..+ .......+..+|.+++|+|+..+. ..+...++..+...++ |+|+|+||+|+.
T Consensus 98 DtPG~~~f--------~~~~~~al~~~D~ailVvda~~g~-~~~t~~~~~~~~~~~~------p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDF--------SSEVTAALRVTDGALVVVDCVEGV-CVQTETVLRQALQERI------RPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhH--------HHHHHHHHhcCCeEEEEEECCCCc-CccHHHHHHHHHHcCC------CEEEEEEChhhh
Confidence 99999653 222345567799999999999874 4556667777666654 899999999997
No 258
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.14 E-value=1e-09 Score=105.33 Aligned_cols=119 Identities=25% Similarity=0.191 Sum_probs=84.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc-------ccc---cccceecCeeEEEEECCc-eeEeeeccceeeccchhhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-------SDA---RLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVD 364 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~-------~~~---~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~ 364 (596)
...+|+++|+.|+||||++.+++..... ... ...+|.-...+.+.+.++ .+.+.||||+.++
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------- 81 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------- 81 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH-------
Confidence 3579999999999999999999876421 111 123566666778888775 8999999999764
Q ss_pred HHHHhHH-HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 365 AFHATLE-EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 365 af~~tl~-e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
...++ ....+..+++++|.+.+... ....+.+.+....- .|++++.||.|+.+.+..
T Consensus 82 --~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-----ip~vVa~NK~DL~~a~pp 139 (187)
T COG2229 82 --KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-----IPVVVAINKQDLFDALPP 139 (187)
T ss_pred --HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-----CCEEEEeeccccCCCCCH
Confidence 22222 23458899999999988544 44444455544431 499999999999876543
No 259
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.12 E-value=7.9e-10 Score=114.60 Aligned_cols=126 Identities=21% Similarity=0.255 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCccccc--------ccce--ecCeeEEEEECCc--eeEeeeccceeeccch----
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDAR--------LFAT--LDPRLKSVVLPSG--KVLLSDTVGFISDLPL---- 360 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~--------~f~T--ld~t~~~i~l~~~--~i~liDTpG~i~~lp~---- 360 (596)
..+|+++|.+|+|||||+|+|.+..+..... ...| +......+...+. .+.++|||||-.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 3689999999999999999999987543321 1222 2222333443333 6899999998543221
Q ss_pred -----hhHHHHHHhHHH---------H--HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 361 -----QLVDAFHATLEE---------V--VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 361 -----~lv~af~~tl~e---------~--~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
.+...|...+.+ + ..+|+++++++.+......... ++++.+.- ..|+|+|+||+|++
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~---~~lk~l~~----~v~vi~VinK~D~l 156 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDI---EFMKRLSK----RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHH---HHHHHHhc----cCCEEEEEECCCcC
Confidence 111122221111 0 1378899999876422222222 33333321 24899999999998
Q ss_pred Ccccc
Q 007599 425 DEEMG 429 (596)
Q Consensus 425 ~~~~~ 429 (596)
...+.
T Consensus 157 ~~~e~ 161 (276)
T cd01850 157 TPEEL 161 (276)
T ss_pred CHHHH
Confidence 75544
No 260
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.7e-10 Score=112.93 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
+.|.++|+.|||||+||-.|.... ...-++++.|..+...+.++.+.++|.||+.+- ...+.+.+.. ...+-
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rl-R~kl~e~~~~----~~~ak 110 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRLGSENVTLVDLPGHSRL-RRKLLEYLKH----NYSAK 110 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEeecCcceEEEeCCCcHHH-HHHHHHHccc----cccce
Confidence 689999999999999998887642 122244567777777777778899999999642 2222222221 12478
Q ss_pred EEEEEEeCCCC--ChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 378 LLVHVLDCTAP--NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 378 liL~VvDas~~--~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.++||||+..- +.....+.+..+|-.... .....|++++.||.|+..+...
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~ 163 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTA 163 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcH
Confidence 89999998643 222223333344433322 2344689999999999877654
No 261
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=6.6e-10 Score=103.29 Aligned_cols=121 Identities=21% Similarity=0.147 Sum_probs=89.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHH-hHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~-tl~e~ 373 (596)
..++.++|+.|.|||.|+..+......-.......++...+.+...+. ++.+|||+|+.+ |++ +....
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr---------FRSVtRsYY 79 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER---------FRSVTRSYY 79 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHH---------HHHHHHHHh
Confidence 468999999999999999999886544333333345556666666555 889999999954 443 44456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+.|-..++|.|++.. +....+.+||...........-+|++.||.|+.+..+.
T Consensus 80 RGAAGAlLVYD~Tsr---dsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V 132 (214)
T KOG0086|consen 80 RGAAGALLVYDITSR---DSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV 132 (214)
T ss_pred ccccceEEEEeccch---hhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh
Confidence 778889999999763 56677778888877655555567888999999776555
No 262
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.6e-12 Score=133.96 Aligned_cols=253 Identities=17% Similarity=0.137 Sum_probs=143.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCC--------C----------cccccccceecCeeEEEEECCceeEeeeccceeecc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSD--------L----------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDL 358 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~--------v----------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l 358 (596)
+++|+++.+..|||||.-.+|+-.. + ..+...+.|+....-.+.|.+.++.++||||++.+-
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 4579999999999999988886321 1 123345666666666667766799999999998641
Q ss_pred chhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc-cccccccc
Q 007599 359 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG-DVEYIDGD 437 (596)
Q Consensus 359 p~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~-~~~~~~~~ 437 (596)
-. . -+-++..|.++.|+|++.+ .+.+.-.+|.--..+.+ |.+.++||+|+..++.. .++.+...
T Consensus 117 -le----v---erclrvldgavav~dasag-ve~qtltvwrqadk~~i------p~~~finkmdk~~anfe~avdsi~ek 181 (753)
T KOG0464|consen 117 -LE----V---ERCLRVLDGAVAVFDASAG-VEAQTLTVWRQADKFKI------PAHCFINKMDKLAANFENAVDSIEEK 181 (753)
T ss_pred -EE----H---HHHHHHhcCeEEEEeccCC-cccceeeeehhccccCC------chhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 11 1 1223447899999999987 45565566665555554 88999999999887643 13333332
Q ss_pred cc----ccccccccc----CCCccccccccccC--CCCCCCCCCCCC-----CccchhhhhhccccccchhhhccCCC-C
Q 007599 438 DI----SNFSRAEDK----DTTSEPVDVECIDN--YGGDDADNNDGF-----VSEDLGESMNKNHNDYSDGWLLSGDE-Q 501 (596)
Q Consensus 438 ~~----~~~~sa~~~----~gi~~L~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~e~~~~e~d~-~ 501 (596)
+. ....+..+. .|+-+++..+-... .+.++.+.+..+ +|+ +-+...+.+..+.+......++ .
T Consensus 182 l~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpe-l~e~~ae~knal~~qlad~~~dfa 260 (753)
T KOG0464|consen 182 LGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPE-LAEELAEAKNALCEQLADLDADFA 260 (753)
T ss_pred hCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHH-HHHHHHHHHHHHHHHHhhccHHHH
Confidence 21 112222222 33333333222222 333333333222 122 2222333444444444322221 1
Q ss_pred CCchhhhhcccc-CCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhhcccccCCCCcccccc
Q 007599 502 DNVEEEFWNAAE-DQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKTLDDKQKSPNVVERDF 578 (596)
Q Consensus 502 l~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~~~~~~~~~~~~~~~~ 578 (596)
..+.++|..+-+ +...++...+++..+..+..| |.|+||+++.||+.||+++.--+-. ..||+|
T Consensus 261 d~~ldef~~n~d~i~a~elksai~~lt~aq~a~~----i~cgsaiknkgiqplldavtmylps---------peerny 325 (753)
T KOG0464|consen 261 DKFLDEFDENFDKIDAEELKSAIHELTCAQKAAP----ILCGSAIKNKGIQPLLDAVTMYLPS---------PEERNY 325 (753)
T ss_pred HHHHHHhhccccccCHHHHHHHHHHHhhhhhhcc----eehhhhhcccCccchhhhhhhccCC---------hhhcch
Confidence 112334443322 222333333444445555555 9999999999999999998654432 568898
No 263
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.12 E-value=1.2e-09 Score=114.17 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc-cccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHH--
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEE-- 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e-- 372 (596)
...+|+++|.+|+|||||+|+|+|..+.. +.....|..++.......+..+.++||||+.... ...+.....+..
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHHHHHh
Confidence 45799999999999999999999987533 3333334444444444444499999999997531 111111111111
Q ss_pred -HHhcCEEEEEEeCCCCChH-HHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 373 -VVEADLLVHVLDCTAPNLE-EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 373 -~~~aDliL~VvDas~~~~~-~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
....|++++|......... .....+..+...+|- ....++|+|++++|..+++.
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~~pd~ 170 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK--DIWRKSLVVLTHAQFSPPDG 170 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh--hhhccEEEEEECCccCCCCC
Confidence 1258999999654332222 223333333334442 12247999999999886543
No 264
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.11 E-value=9.7e-10 Score=110.50 Aligned_cols=107 Identities=23% Similarity=0.271 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeE--EEE-ECCceeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLK--SVV-LPSGKVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~--~i~-l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...+|+++|++|+|||||+|+|.+..... +.....+ .+. ..+.++.++||||.+ ...+..
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~------~~~~~~g~i~i~~~~~~~i~~vDtPg~~-----------~~~l~~ 100 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQ------NISDIKGPITVVTGKKRRLTFIECPNDI-----------NAMIDI 100 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccC------ccccccccEEEEecCCceEEEEeCCchH-----------HHHHHH
Confidence 45789999999999999999998852110 1111111 112 223389999999864 223444
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~~ 426 (596)
+..+|++++|+|++.+. ..+...++.++...+. | +|+|+||+|+++.
T Consensus 101 ak~aDvVllviDa~~~~-~~~~~~i~~~l~~~g~------p~vi~VvnK~D~~~~ 148 (225)
T cd01882 101 AKVADLVLLLIDASFGF-EMETFEFLNILQVHGF------PRVMGVLTHLDLFKK 148 (225)
T ss_pred HHhcCEEEEEEecCcCC-CHHHHHHHHHHHHcCC------CeEEEEEeccccCCc
Confidence 56799999999998764 3344556677776664 5 4569999998854
No 265
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.11 E-value=8.9e-11 Score=109.60 Aligned_cols=120 Identities=19% Similarity=0.144 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecC--eeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDP--RLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~--t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
.++++++|..-+|||||+-+.....+. .....|+.. ....+.+.+. ++.+|||+|+.++ +.+ ..-.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErf--HAL------GPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERF--HAL------GPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHHHHhhcccccccceeeeeeeeccchHhh--hcc------CceE
Confidence 378999999999999999887765432 122233322 2344555554 7899999999654 111 1122
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
++.++.+++|.|+++. ...+.+.+|..++........-+++|.||+|+......
T Consensus 83 YRgSnGalLVyDITDr---dSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V 136 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDR---DSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV 136 (218)
T ss_pred EeCCCceEEEEeccch---HHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhh
Confidence 4568999999999875 44555666666655444444578999999998665444
No 266
>PLN00023 GTP-binding protein; Provisional
Probab=99.11 E-value=6.5e-10 Score=116.85 Aligned_cols=123 Identities=19% Similarity=0.102 Sum_probs=75.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC-------------c--eeEeeeccceeeccch
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-------------G--KVLLSDTVGFISDLPL 360 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~-------------~--~i~liDTpG~i~~lp~ 360 (596)
...+|+|+|..|+|||||++++.+........+....+.....+.+.+ . .+.||||+|...+-
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr-- 97 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK-- 97 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh--
Confidence 457899999999999999999998653322222111222233444431 1 58899999986431
Q ss_pred hhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC---------cccCCcEEEEEecCCCCCc
Q 007599 361 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS---------EEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 361 ~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~---------~~~~~PiIvVlNKiDlv~~ 426 (596)
. . .-..+..+|++++|+|+++.........+.+.+...+-. .....|+|+|.||+|+...
T Consensus 98 s----L--~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 D----C--RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred h----h--hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 1 1 112356799999999998754433333333333332110 0123589999999999664
No 267
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=8.7e-10 Score=103.37 Aligned_cols=118 Identities=19% Similarity=0.112 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|.++|.+|+|||||+-+++...+..........|..+..+.+.+. ++.+|||+|+.++ ...|....+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErF--------RtLTpSyyR 82 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERF--------RTLTPSYYR 82 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhh--------hccCHhHhc
Confidence 478999999999999999999886544333333446777777888776 8899999999653 122555677
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc-ccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE-EKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~-~~~~PiIvVlNKiDlv~ 425 (596)
.|..+++|.|++..+. ...+..|++++.... ..+.-.++|.||+|+.+
T Consensus 83 gaqGiIlVYDVT~Rdt---f~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 83 GAQGIILVYDVTSRDT---FVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred cCceeEEEEEccchhh---HHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 8999999999987543 334445566655422 12223578999999654
No 268
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.09 E-value=6.4e-10 Score=105.26 Aligned_cols=112 Identities=29% Similarity=0.262 Sum_probs=69.1
Q ss_pred EEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeE------------------------------------------
Q 007599 300 VAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLK------------------------------------------ 337 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~------------------------------------------ 337 (596)
|+++|..+||||||+|+|+|..+...+...+|..++.-
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999875433333333222110
Q ss_pred -----------EEE--ECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHH
Q 007599 338 -----------SVV--LPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ 403 (596)
Q Consensus 338 -----------~i~--l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~ 403 (596)
.+. .... .+.|+||||+-....... ..+.+.+..+|++++|+++.+.........+.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~----~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~ 156 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT----EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP 156 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS----HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH----HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC
Confidence 000 0111 567999999965322111 3344555779999999999886555555555444433
Q ss_pred cCCCcccCCcEEEEEecC
Q 007599 404 VGVSEEKLKNMIEVWNKI 421 (596)
Q Consensus 404 lgi~~~~~~PiIvVlNKi 421 (596)
.. ..+|+|+||+
T Consensus 157 ~~------~~~i~V~nk~ 168 (168)
T PF00350_consen 157 DK------SRTIFVLNKA 168 (168)
T ss_dssp TC------SSEEEEEE-G
T ss_pred CC------CeEEEEEcCC
Confidence 22 2589999995
No 269
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.06 E-value=3.4e-11 Score=122.13 Aligned_cols=80 Identities=19% Similarity=0.141 Sum_probs=38.3
Q ss_pred eeEeeeccceeeccchhhH-HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 345 KVLLSDTVGFISDLPLQLV-DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv-~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
.+.++||||+++...+.-. ..+-..+.. ...-++++++|+.... .....+..+|..+.+......|.|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~--~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCS--DPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-S--SHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEeccccc--ChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence 4679999999876444321 112222221 2345788999987542 23333344343332222223499999999999
Q ss_pred CCcc
Q 007599 424 HDEE 427 (596)
Q Consensus 424 v~~~ 427 (596)
++..
T Consensus 169 ~~~~ 172 (238)
T PF03029_consen 169 LSKY 172 (238)
T ss_dssp S-HH
T ss_pred ccch
Confidence 8854
No 270
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.05 E-value=5.7e-10 Score=130.05 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc----------------ccccccceecCeeEEEEE--C--CceeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVL--P--SGKVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~----------------~~~~~f~Tld~t~~~i~l--~--~~~i~liDTpG~i 355 (596)
++++|+++||.++|||||+++|+...-. .+...+.|+......+.+ . +..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4679999999999999999999753211 111233455555445544 3 2278999999997
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+ ...+...+..+|++++|+|+..+. ..+...++..+...++ |.|+|+||+|+...+
T Consensus 99 df--------~~~~~~~l~~~D~avlVvda~~g~-~~~t~~~~~~~~~~~~------~~iv~iNK~D~~~~~ 155 (731)
T PRK07560 99 DF--------GGDVTRAMRAVDGAIVVVDAVEGV-MPQTETVLRQALRERV------KPVLFINKVDRLIKE 155 (731)
T ss_pred Ch--------HHHHHHHHHhcCEEEEEEECCCCC-CccHHHHHHHHHHcCC------CeEEEEECchhhccc
Confidence 53 122344556799999999998763 4455556665555554 779999999987543
No 271
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.2e-09 Score=113.38 Aligned_cols=117 Identities=24% Similarity=0.332 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC-------CcccccccceecCeeEEEEEC------Cc---eeEeeeccceeeccchh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD-------LFSDARLFATLDPRLKSVVLP------SG---KVLLSDTVGFISDLPLQ 361 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~-------v~~~~~~f~Tld~t~~~i~l~------~~---~i~liDTpG~i~~lp~~ 361 (596)
.+++++||..+|||||-++|+... ...+-..+.|+|.....+... .+ ++.++|.||+.+
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----- 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----- 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence 689999999999999999997542 112223456666654444332 22 578999999953
Q ss_pred hHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 362 LVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 362 lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+ ++..+....-.|+.++|+|+..+. ..+.... -++.++-. +..|+|+||+|.+++.+.
T Consensus 83 L---IRtiiggaqiiDlm~lviDv~kG~-QtQtAEc-Liig~~~c-----~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 83 L---IRTIIGGAQIIDLMILVIDVQKGK-QTQTAEC-LIIGELLC-----KKLVVVINKIDVLPENQR 140 (522)
T ss_pred H---HHHHHhhhheeeeeeEEEehhccc-ccccchh-hhhhhhhc-----cceEEEEeccccccchhh
Confidence 2 333344555689999999998763 2222221 12222211 368999999999988665
No 272
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.05 E-value=6.4e-10 Score=129.38 Aligned_cols=117 Identities=19% Similarity=0.096 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC----------------cccccccceecCeeEEE--EECC--ceeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSV--VLPS--GKVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v----------------~~~~~~f~Tld~t~~~i--~l~~--~~i~liDTpG~i 355 (596)
.+++|+++|+.|+|||||+++|+.... ..+...+.|+....... .+.+ ..+.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 357999999999999999999974210 01111344544433332 1222 289999999997
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+. ..+...+..+|++++|+|+..+. ..+...++..+...++ |.|+|+||+|+...+
T Consensus 98 ~f~--------~~~~~al~~aD~~llVvda~~g~-~~~t~~~~~~~~~~~~------p~ivviNKiD~~~~~ 154 (720)
T TIGR00490 98 DFG--------GDVTRAMRAVDGAIVVVCAVEGV-MPQTETVLRQALKENV------KPVLFINKVDRLINE 154 (720)
T ss_pred ccH--------HHHHHHHHhcCEEEEEEecCCCC-CccHHHHHHHHHHcCC------CEEEEEEChhcccch
Confidence 531 22344567799999999998763 3344444454444443 788999999997654
No 273
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.04 E-value=2.3e-09 Score=114.81 Aligned_cols=123 Identities=24% Similarity=0.286 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC----CCc------------cccccc---ceecCee---EEEEEC--C---ceeEe
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS----DLF------------SDARLF---ATLDPRL---KSVVLP--S---GKVLL 348 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~----~v~------------~~~~~f---~Tld~t~---~~i~l~--~---~~i~l 348 (596)
|-..|+++|+.|+|||||+|++++. ++. +.+..+ +|++|.. ..+.+. + +++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4578999999999999999999998 332 445556 7888876 444432 2 38999
Q ss_pred eeccceeec---------------cchh-----hHHH-HHHhHHHHH-hcCEEEEEE-eCCC-----CChHHHHHHHHHH
Q 007599 349 SDTVGFISD---------------LPLQ-----LVDA-FHATLEEVV-EADLLVHVL-DCTA-----PNLEEHRTTVLQV 400 (596)
Q Consensus 349 iDTpG~i~~---------------lp~~-----lv~a-f~~tl~e~~-~aDliL~Vv-Das~-----~~~~~~~~~v~~i 400 (596)
+||+|+... .||. +.++ ---|...+. .+|+.++|. |.+- .........+.+.
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999998521 1111 0111 112555666 799999998 7751 1233445666677
Q ss_pred HHHcCCCcccCCcEEEEEecCCCC
Q 007599 401 LQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 401 L~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
|++++. |+|+|+||+|-.
T Consensus 176 Lk~~~k------PfiivlN~~dp~ 193 (492)
T TIGR02836 176 LKELNK------PFIILLNSTHPY 193 (492)
T ss_pred HHhcCC------CEEEEEECcCCC
Confidence 888775 999999999944
No 274
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.03 E-value=3.7e-10 Score=115.95 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=26.2
Q ss_pred CEEEccCCCCCCHHHHHHHHHHHHhhcc
Q 007599 538 PDVKISARTGVGLQELLEIIDERLKTLD 565 (596)
Q Consensus 538 ~vv~vSA~tG~Gi~eLl~~I~~~~~~~~ 565 (596)
||+.+||.+|+|+++|+++|+++.+...
T Consensus 230 pv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 230 PVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred ceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999988864
No 275
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=7.3e-10 Score=102.62 Aligned_cols=122 Identities=22% Similarity=0.166 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|++||..|+|||.|+.+++..-+.+..-.....+.-..++.+.+. ++.+|||+|+.++ ...|....+
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerf--------rsitqsyyr 78 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERF--------RSITQSYYR 78 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHH--------HHHHHHHhh
Confidence 478999999999999999999976444444333445666777888776 7899999999643 122555667
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.|+.+++|.|++-.. ...-+-+||.++.-....+.--|+|.||+|+.+..+.
T Consensus 79 sahalilvydiscqp---sfdclpewlreie~yan~kvlkilvgnk~d~~drrev 130 (213)
T KOG0095|consen 79 SAHALILVYDISCQP---SFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREV 130 (213)
T ss_pred hcceEEEEEecccCc---chhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhh
Confidence 799999999998543 3334455666654322223346899999999876554
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.02 E-value=8.5e-10 Score=118.26 Aligned_cols=118 Identities=21% Similarity=0.231 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC----------------cccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL----------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v----------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
.+++|||+-|..+|||||++.|+.... ..+...+.|+-.....+.|++-.|.++|||||..+-
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG- 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG- 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc-
Confidence 567999999999999999999986531 123345677766667788877799999999997542
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
+... +.+.-.|.++++||++++.+++..-.+.+.| +.|+ +.|+|+||+|+..+..
T Consensus 83 ----GEVE---Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl-~~gL------~PIVVvNKiDrp~Arp 137 (603)
T COG1217 83 ----GEVE---RVLSMVDGVLLLVDASEGPMPQTRFVLKKAL-ALGL------KPIVVINKIDRPDARP 137 (603)
T ss_pred ----chhh---hhhhhcceEEEEEEcccCCCCchhhhHHHHH-HcCC------CcEEEEeCCCCCCCCH
Confidence 1121 2234489999999999987655544444444 4565 5689999999987653
No 277
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.01 E-value=6.2e-09 Score=109.12 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.1
Q ss_pred CEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 538 PDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 538 ~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
|++++||.+|.|+++|++.|.++....
T Consensus 214 ~v~~iSA~~g~Gi~~L~~~i~~~~~~~ 240 (300)
T TIGR00750 214 PVLTTSAVEGRGIDELWDAIEEHKTFL 240 (300)
T ss_pred CEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999986643
No 278
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.6e-09 Score=110.57 Aligned_cols=120 Identities=20% Similarity=0.226 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC----------------CcccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD----------------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~----------------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+.+||.++|||||..+|++.- ...+...+.|+.+..-.....+..+-.+|.||+..+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY-- 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY-- 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH--
Confidence 46899999999999999999998531 123445677777765555555558899999999644
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.+..+.....+|..++|+.+.++.+.+..++++ +..+.|+. .+++++||+|++++.+.
T Consensus 89 ------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larqvGvp-----~ivvflnK~Dmvdd~el 146 (394)
T COG0050 89 ------VKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQVGVP-----YIVVFLNKVDMVDDEEL 146 (394)
T ss_pred ------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhhcCCc-----EEEEEEecccccCcHHH
Confidence 556666677799999999999988877777663 45667773 47889999999986555
No 279
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.2e-09 Score=120.08 Aligned_cols=121 Identities=24% Similarity=0.246 Sum_probs=87.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-------------------------------CcccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-------------------------------LFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-------------------------------v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
....++++|+.+||||||+-+|+-.- ...+...+.|.+..+..+.-+..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 45789999999999999999986320 11334456666666656554334
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCCh------HHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL------EEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~------~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.|+|+||+-.+.|. +......||+.++|+|++.+.+ ..+......+|..+|+. .+|+++
T Consensus 256 ~~tliDaPGhkdFi~n--------mi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~-----qlivai 322 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPN--------MISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS-----QLIVAI 322 (603)
T ss_pred eEEEecCCCccccchh--------hhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc-----eEEEEe
Confidence 8999999997655333 3444556999999999987633 33556666889999974 589999
Q ss_pred ecCCCCCcccc
Q 007599 419 NKIDYHDEEMG 429 (596)
Q Consensus 419 NKiDlv~~~~~ 429 (596)
||+|+++..+.
T Consensus 323 NKmD~V~Wsq~ 333 (603)
T KOG0458|consen 323 NKMDLVSWSQD 333 (603)
T ss_pred ecccccCccHH
Confidence 99999987654
No 280
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.99 E-value=1.1e-09 Score=106.42 Aligned_cols=119 Identities=21% Similarity=0.306 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEE--CCc-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL--PSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l--~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+.|.|+|++|||||+|+..|...... .-.+.+.+.. ...+ ..+ .+.++|+||+.+- ...+.. .+....
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~---~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rl-r~~~~~----~~~~~~ 74 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV---PTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRL-RSKLLD----ELKYLS 74 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEE-ECCGSSTCGTCECEEEETT-HCC-CHHHHH----HHHHHG
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC---CeeccccCCc-eEEeecCCCCEEEEEECCCcHHH-HHHHHH----hhhchh
Confidence 68999999999999999999976311 0011121211 1222 122 8999999999642 222222 222356
Q ss_pred hcCEEEEEEeCCCCChHHHH----HHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 375 EADLLVHVLDCTAPNLEEHR----TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~----~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.+..|+||+|++. ..... +.+.++|...... ....|++++.||.|+..+..
T Consensus 75 ~~k~IIfvvDSs~--~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 75 NAKGIIFVVDSST--DQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp GEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT---
T ss_pred hCCEEEEEEeCcc--chhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCccccccCC
Confidence 6899999999874 22333 3344444443322 23469999999999987653
No 281
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.2e-09 Score=115.67 Aligned_cols=87 Identities=30% Similarity=0.518 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc------------------eeEeeeccceeeccc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG------------------KVLLSDTVGFISDLP 359 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~------------------~i~liDTpG~i~~lp 359 (596)
..++|||-||+|||||||+||...+.+.++||+|++|..+.+..++. .+.++|.+|.+..-.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 57999999999999999999999988899999999999998876531 356899999975422
Q ss_pred --hhhHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007599 360 --LQLVDAFHATLEEVVEADLLVHVLDCTA 387 (596)
Q Consensus 360 --~~lv~af~~tl~e~~~aDliL~VvDas~ 387 (596)
..+-..| |..++.+|.++||||++.
T Consensus 83 ~GeGLGNkF---L~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKF---LDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHH---HHhhhhcCeEEEEEEecC
Confidence 2333334 677788999999999984
No 282
>PRK13768 GTPase; Provisional
Probab=98.97 E-value=1.1e-09 Score=112.08 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=45.7
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHh--cCEEEEEEeCCCCChHHHHHHHHHHHH---HcCCCcccCCcEEEEEe
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVE--ADLLVHVLDCTAPNLEEHRTTVLQVLQ---QVGVSEEKLKNMIEVWN 419 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~--aDliL~VvDas~~~~~~~~~~v~~iL~---~lgi~~~~~~PiIvVlN 419 (596)
+++++||||.++...+. .......+.+.. ++++++|+|+++.......... .++. ... ...|+|+|+|
T Consensus 98 ~~~~~d~~g~~~~~~~~--~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~-~~l~~~~~~~----~~~~~i~v~n 170 (253)
T PRK13768 98 DYVLVDTPGQMELFAFR--ESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSL-LLLALSVQLR----LGLPQIPVLN 170 (253)
T ss_pred CEEEEeCCcHHHHHhhh--HHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHH-HHHHHHHHHH----cCCCEEEEEE
Confidence 57899999987643221 112222222322 8999999999765333332222 1121 111 1259999999
Q ss_pred cCCCCCcccc
Q 007599 420 KIDYHDEEMG 429 (596)
Q Consensus 420 KiDlv~~~~~ 429 (596)
|+|+++..+.
T Consensus 171 K~D~~~~~~~ 180 (253)
T PRK13768 171 KADLLSEEEL 180 (253)
T ss_pred hHhhcCchhH
Confidence 9999876544
No 283
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.96 E-value=1.1e-08 Score=101.86 Aligned_cols=127 Identities=18% Similarity=0.215 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccc--cccceecCeeEEEEECCceeEeeeccceeecc--chhhHHHHHHhHH-HH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDA--RLFATLDPRLKSVVLPSGKVLLSDTVGFISDL--PLQLVDAFHATLE-EV 373 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~--~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l--p~~lv~af~~tl~-e~ 373 (596)
+|.|+|.+||||||+.|.|+|...+... ....|.........+.+..+.++||||+...- +......+...+. ..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 6899999999999999999998765433 23445666666666666699999999985421 1122222222121 22
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
...+++++|+..... .......+..+.+.+|-. ..+.+|+|++..|...+..
T Consensus 82 ~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 82 PGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp T-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTT
T ss_pred CCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHH--HHhHhhHHhhhcccccccc
Confidence 357999999998743 444555555555556632 2347999999999776544
No 284
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.94 E-value=3.6e-09 Score=98.02 Aligned_cols=117 Identities=22% Similarity=0.253 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCccccc-ccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHH-hHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDAR-LFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 373 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~-~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~-tl~e~ 373 (596)
....|+|.+|+|||+|+.++.... +..++ ..+..|...+++.+++. ++.||||+|... |+. +-...
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqEr---------Frtitstyy 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQER---------FRTITSTYY 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHH---------HHHHHHHHc
Confidence 456789999999999999998864 33333 33347888899999876 889999999954 322 22345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
...+.++.|.|++.+ +....+..||+++.-... ..|-++|.||+|......
T Consensus 79 rgthgv~vVYDVTn~---ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~Rrv 129 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNG---ESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRV 129 (198)
T ss_pred cCCceEEEEEECcch---hhhHhHHHHHHHHHhcCc-cccceecccCCCCcccee
Confidence 668899999999875 556667788888754322 358899999999866543
No 285
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1e-08 Score=95.00 Aligned_cols=122 Identities=20% Similarity=0.166 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..++.++|...+|||||+-+.++....+.-.....++....++.-.+. ++.+|||.|+.+. -..|...++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEry--------rtiTTayyR 92 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERY--------RTITTAYYR 92 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhh--------hHHHHHHhh
Confidence 358999999999999999999997655433333345666666665555 8899999999753 223556678
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.|+.++++.|+++. +....+..+...+......+.|+|+|.||||+.++...
T Consensus 93 gamgfiLmyDitNe---eSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvi 144 (193)
T KOG0093|consen 93 GAMGFILMYDITNE---ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVI 144 (193)
T ss_pred ccceEEEEEecCCH---HHHHHHHHHHHHheeeeccCceEEEEecccCCccceee
Confidence 89999999999864 55666667776665544445699999999998765443
No 286
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1e-08 Score=98.62 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.-..|.++|--||||||++..|--.++... -.|+...+..+.+.+-.+.+||.-|+.+.-|. . ......
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~l-----W---~~Y~~~ 84 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNISFTVWDVGGQEKLRPL-----W---KHYFQN 84 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcceEEEEEecCCCcccccc-----h---hhhccC
Confidence 447899999999999999998866554332 34566667788888669999999998543111 1 122455
Q ss_pred cCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 376 ADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 376 aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.+.+++|+|.++.. ..+..+.+..+|..-. ....|++++.||.|+..+-.
T Consensus 85 t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~---l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 85 TQGLIFVVDSSDRERIEEAKEELHRMLAEPE---LRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc---cCCceEEEEechhhccccCC
Confidence 89999999998752 2333344444443332 24469999999999877644
No 287
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.88 E-value=6.2e-09 Score=94.19 Aligned_cols=105 Identities=26% Similarity=0.332 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
.++++||..|+|||||+++|.|... +--.+..+.+++. ..+||||-.-.-|.. +.+.+--...+|
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~---------lykKTQAve~~d~--~~IDTPGEy~~~~~~----Y~aL~tt~~dad 66 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT---------LYKKTQAVEFNDK--GDIDTPGEYFEHPRW----YHALITTLQDAD 66 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh---------hhcccceeeccCc--cccCCchhhhhhhHH----HHHHHHHhhccc
Confidence 3689999999999999999999752 2223345555433 357999965332222 222233345699
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 378 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 378 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
++++|..+.++...- .- ++.....+|+|-|++|+|+..+.
T Consensus 67 vi~~v~~and~~s~f-----~p-----~f~~~~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 67 VIIYVHAANDPESRF-----PP-----GFLDIGVKKVIGVVTKADLAEDA 106 (148)
T ss_pred eeeeeecccCccccC-----Cc-----ccccccccceEEEEecccccchH
Confidence 999999888763211 01 22222335899999999997643
No 288
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.88 E-value=1.4e-09 Score=110.31 Aligned_cols=27 Identities=48% Similarity=0.610 Sum_probs=25.0
Q ss_pred CEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 538 PDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 538 ~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
||+.|||.+|.||++|++.|+++.+.+
T Consensus 206 pV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 206 PVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999987665
No 289
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.87 E-value=1.8e-08 Score=99.76 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+++++|+++|+.|||||||++++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999999754
No 290
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.85 E-value=1e-08 Score=104.32 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc---cccccceecCeeEEEEECCceeEeeeccc-----eeeccchhhHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS---DARLFATLDPRLKSVVLPSGKVLLSDTVG-----FISDLPLQLVDAFH 367 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~---~~~~f~Tld~t~~~i~l~~~~i~liDTpG-----~i~~lp~~lv~af~ 367 (596)
+.|.++++|.+|+|||+|||.++...... ....+.| ..-....-+..+.++|.|| +-..+|.+....-.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 45899999999999999999998764221 1111111 1111112234889999999 44445555544444
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 368 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 368 ~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.++.+-...-.+.+.+|++.+. ........+++.+.++ |+.+|+||||+...-.
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i-~~~D~~~i~~~ge~~V------P~t~vfTK~DK~k~~~ 265 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPI-QPTDNPEIAWLGENNV------PMTSVFTKCDKQKKVK 265 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCC-CCCChHHHHHHhhcCC------CeEEeeehhhhhhhcc
Confidence 4444444444566678888763 2233334578888776 9999999999876543
No 291
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.84 E-value=4.1e-08 Score=110.58 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeecc-chhhHHHHHHhH-HHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDL-PLQLVDAFHATL-EEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l-p~~lv~af~~tl-~e~~ 374 (596)
.+|+|+|.+|+|||||+|.|+|..+. +......|...........+..+.++||||+.... .......+...+ ..+.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Ls 198 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIK 198 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHh
Confidence 68999999999999999999998754 33333344443322333444489999999997532 111112222212 1222
Q ss_pred --hcCEEEEEEeCCCCChH-HHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 --EADLLVHVLDCTAPNLE-EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 --~aDliL~VvDas~~~~~-~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++|+|......... +....+..+-+-+|- .....+|+|++..|.+++
T Consensus 199 k~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~--~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 199 KNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP--SIWFNAIVTLTHAASAPP 251 (763)
T ss_pred cCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH--HhHcCEEEEEeCCccCCC
Confidence 47999998876533222 233333333344552 222479999999999874
No 292
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.83 E-value=1.6e-08 Score=108.20 Aligned_cols=89 Identities=24% Similarity=0.303 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCc-----------------eeEeeeccceeeccc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSG-----------------KVLLSDTVGFISDLP 359 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~-----------------~i~liDTpG~i~~lp 359 (596)
..++|||.||+|||||||+|++... .+.+++|+|++|..+.+.+++. .+.++|.||.+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 4799999999999999999999988 8899999999999999988773 478999999986422
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTA 387 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~ 387 (596)
.. .+--...+..++.+|+++||+|+..
T Consensus 83 ~g-~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KG-EGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cc-cCcchHHHHHHHhCCEEEEEEeCCC
Confidence 11 0111234667788999999999864
No 293
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2e-08 Score=92.37 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHH-hHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~-tl~e~ 373 (596)
+.+..++|.-|+|||.|+..++...+...-..........+.+...+. ++.+|||+|+.+ |+. |....
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqer---------fravtrsyy 81 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER---------FRAVTRSYY 81 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHH---------HHHHHHHHh
Confidence 567889999999999999999987654444444445666677777776 789999999964 333 44456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+.+...++|.|++.. ....++..||....-...++.-++++.||.|+....+.
T Consensus 82 rgaagalmvyditrr---stynhlsswl~dar~ltnpnt~i~lignkadle~qrdv 134 (215)
T KOG0097|consen 82 RGAAGALMVYDITRR---STYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDV 134 (215)
T ss_pred ccccceeEEEEehhh---hhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccC
Confidence 778889999999764 45566777777654333333457889999998665444
No 294
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.78 E-value=3.5e-08 Score=92.97 Aligned_cols=120 Identities=21% Similarity=0.195 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHH-hHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 373 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~-tl~e~ 373 (596)
..+.++|.+-+|||+|+..++......-..+....|...+-+.+..+ ++.+|||+|+.+ |++ |....
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqer---------frsitksyy 79 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQER---------FRSITKSYY 79 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHH---------HHHHHHHHh
Confidence 56889999999999999999976544333333344444555666655 789999999964 433 55566
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcc-cCCc-EEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEE-KLKN-MIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~-~~~P-iIvVlNKiDlv~~~~~ 429 (596)
+++-.+++|.|+++. +..+++.+|+++..+... +.++ +.+|..|+|+....+.
T Consensus 80 rnsvgvllvyditnr---~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV 134 (213)
T KOG0091|consen 80 RNSVGVLLVYDITNR---ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV 134 (213)
T ss_pred hcccceEEEEeccch---hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc
Confidence 778889999999864 556777778777544322 2233 6789999999765444
No 295
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.4e-08 Score=106.16 Aligned_cols=120 Identities=21% Similarity=0.215 Sum_probs=90.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC---------------------------------CcccccccceecCeeEEEEEC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD---------------------------------LFSDARLFATLDPRLKSVVLP 342 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~---------------------------------v~~~~~~f~Tld~t~~~i~l~ 342 (596)
...++..+|...-|||||+-+|+-.. ...+..-+.|+|...+.+.-+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45688999999999999999997431 013344567888777776666
Q ss_pred CceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 343 SGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 343 ~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
..++++.|||||..+ -+.+.....-||+++++||+..+. .+|...-.-+...+|+. .+++++||||
T Consensus 85 KRkFIiADTPGHeQY--------TRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLGIr-----hvvvAVNKmD 150 (431)
T COG2895 85 KRKFIIADTPGHEQY--------TRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLGIR-----HVVVAVNKMD 150 (431)
T ss_pred cceEEEecCCcHHHH--------hhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhCCc-----EEEEEEeeec
Confidence 669999999999754 344445556699999999998874 45555555777888984 5899999999
Q ss_pred CCCcccc
Q 007599 423 YHDEEMG 429 (596)
Q Consensus 423 lv~~~~~ 429 (596)
|++-++.
T Consensus 151 Lvdy~e~ 157 (431)
T COG2895 151 LVDYSEE 157 (431)
T ss_pred ccccCHH
Confidence 9987654
No 296
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.1e-08 Score=95.44 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=79.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-----CcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-----LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATL 370 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-----v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl 370 (596)
....|.|+|.-|||||||+.++-..- ....+...+|.....+++.+.+..+.+||.-|+.. .++..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~---------lrSlw 86 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES---------LRSLW 86 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH---------HHHHH
Confidence 34689999999999999998874321 11223344566667778888755999999988842 22222
Q ss_pred H-HHHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 371 E-EVVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 371 ~-e~~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
. .+..++.+++|+|++++. .+........++..-.+. ..|+++.+||-|+.++...
T Consensus 87 ~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~le---g~p~L~lankqd~q~~~~~ 144 (197)
T KOG0076|consen 87 KKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLE---GAPVLVLANKQDLQNAMEA 144 (197)
T ss_pred HHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhc---CCchhhhcchhhhhhhhhH
Confidence 1 234599999999999852 333333333444332222 2499999999998776544
No 297
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.75 E-value=1.5e-08 Score=105.47 Aligned_cols=89 Identities=27% Similarity=0.405 Sum_probs=73.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-----------------eeEeeeccceeecc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-----------------KVLLSDTVGFISDL 358 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-----------------~i~liDTpG~i~~l 358 (596)
....++|||.+|+|||||||+|+.....+.+.+|+|++|....+..++. .+.+.|.+|.+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 3469999999999999999999999988999999999999988877642 36789999997542
Q ss_pred c--hhhHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007599 359 P--LQLVDAFHATLEEVVEADLLVHVLDCTA 387 (596)
Q Consensus 359 p--~~lv~af~~tl~e~~~aDliL~VvDas~ 387 (596)
. ..+-..| +..++.+|.++|||++..
T Consensus 99 s~G~GLGN~F---Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKF---LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHH---HHhhhhccceeEEEEecC
Confidence 2 2444445 667778999999999865
No 298
>PTZ00099 rab6; Provisional
Probab=98.74 E-value=1.2e-07 Score=91.82 Aligned_cols=78 Identities=23% Similarity=0.144 Sum_probs=47.8
Q ss_pred EEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcE
Q 007599 337 KSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM 414 (596)
Q Consensus 337 ~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~Pi 414 (596)
..+.+.+. .+.+|||+|...+. . ..-..+..+|++++|+|++++..-.. +..++..+........|+
T Consensus 20 ~~~~~~~~~v~l~iwDt~G~e~~~--~------~~~~~~~~ad~~ilv~D~t~~~sf~~---~~~w~~~i~~~~~~~~pi 88 (176)
T PTZ00099 20 KTLYLDEGPVRLQLWDTAGQERFR--S------LIPSYIRDSAAAIVVYDITNRQSFEN---TTKWIQDILNERGKDVII 88 (176)
T ss_pred EEEEECCEEEEEEEEECCChHHhh--h------ccHHHhCCCcEEEEEEECCCHHHHHH---HHHHHHHHHHhcCCCCeE
Confidence 34555554 78899999985431 1 11223567999999999987533222 223333221111123589
Q ss_pred EEEEecCCCCC
Q 007599 415 IEVWNKIDYHD 425 (596)
Q Consensus 415 IvVlNKiDlv~ 425 (596)
|+|.||+|+..
T Consensus 89 ilVgNK~DL~~ 99 (176)
T PTZ00099 89 ALVGNKTDLGD 99 (176)
T ss_pred EEEEECccccc
Confidence 99999999854
No 299
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.73 E-value=5.8e-08 Score=95.82 Aligned_cols=121 Identities=21% Similarity=0.114 Sum_probs=80.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHH-hHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHA-TLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~-tl~e~ 373 (596)
...|+++|.+|+|||+|...+.+.. ++..+..+.-+.....+.+.+. .+.++||+|...+ .. .-..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~-f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~---------~~~~~~~~ 72 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR-FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEF---------SAMRDLYI 72 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc-cccccCCCccccceEEEEECCEEEEEEEEcCCCcccC---------hHHHHHhh
Confidence 3689999999999999998888854 3344444444556667777765 7789999995432 11 11235
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
..+|..++|+++++..+.+....+.+.+.. .......|+|+|.||+|+......
T Consensus 73 ~~~~gF~lVysitd~~SF~~~~~l~~~I~r--~~~~~~~PivlVGNK~Dl~~~R~V 126 (196)
T KOG0395|consen 73 RNGDGFLLVYSITDRSSFEEAKQLREQILR--VKGRDDVPIILVGNKCDLERERQV 126 (196)
T ss_pred ccCcEEEEEEECCCHHHHHHHHHHHHHHHH--hhCcCCCCEEEEEEcccchhcccc
Confidence 568999999999876444443333333322 122223599999999999775443
No 300
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.72 E-value=1.1e-07 Score=101.97 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCccc-----ccccceecCeeEEEEECCc-eeEeeeccceeec--cchhhHHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSD-----ARLFATLDPRLKSVVLPSG-KVLLSDTVGFISD--LPLQLVDAFHAT 369 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~-----~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~--lp~~lv~af~~t 369 (596)
..|||+|.+|+|||||+|+|.|..-... ...-+|..++ ....+.. .+.+||.||.-.. -+......
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~---- 109 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIGTPNFPPEEYLKE---- 109 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GGGSS--HHHHHHH----
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCCCCCCCHHHHHHH----
Confidence 6899999999999999999988532211 1112233333 2223333 7999999998432 11111111
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 370 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 370 l~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
..+...|+++++.+.. .......+...+..++ +|+.+|.+|+|.
T Consensus 110 -~~~~~yD~fiii~s~r---f~~ndv~La~~i~~~g------K~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 -VKFYRYDFFIIISSER---FTENDVQLAKEIQRMG------KKFYFVRTKVDS 153 (376)
T ss_dssp -TTGGG-SEEEEEESSS-----HHHHHHHHHHHHTT-------EEEEEE--HHH
T ss_pred -ccccccCEEEEEeCCC---CchhhHHHHHHHHHcC------CcEEEEEecccc
Confidence 1245689888776432 3344444556666666 489999999996
No 301
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.71 E-value=9.2e-08 Score=99.39 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+...|.|+|.+|||||||+++|.+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999988764
No 302
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=4.4e-08 Score=108.62 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc-----------------ccccccceecCeeEEEEECCc-----eeEeeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-----------------SDARLFATLDPRLKSVVLPSG-----KVLLSDTVG 353 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~-----------------~~~~~f~Tld~t~~~i~l~~~-----~i~liDTpG 353 (596)
.+.+|+++|+-++|||+|+..|.+.... .+...+.++..+.-++.+.+. -+.++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4689999999999999999999875321 122233344333344444432 467999999
Q ss_pred eeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 354 FISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 354 ~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
++.+ . ..+...+..+|.+++|+|+.++.+-.....+....+. ..|+++|+||+|++-
T Consensus 207 HVnF-----~---DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-------~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 207 HVNF-----S---DETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-------RLPIVVVINKVDRLI 263 (971)
T ss_pred cccc-----h---HHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc-------cCcEEEEEehhHHHH
Confidence 9854 1 2234456669999999999987554443333332221 248999999999753
No 303
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.69 E-value=1.4e-07 Score=93.18 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCEEEccCCCCCCHHHHHHHHHHHH
Q 007599 536 HAPDVKISARTGVGLQELLEIIDERL 561 (596)
Q Consensus 536 ~~~vv~vSA~tG~Gi~eLl~~I~~~~ 561 (596)
.+|++.|||+||+|+.+|++.|.+.+
T Consensus 170 ~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 170 EKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998754
No 304
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.68 E-value=6e-08 Score=98.07 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHH-HHHh
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLE-EVVE 375 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~-e~~~ 375 (596)
+|.++|+.||||||..+.+.+.-. .....+..|.+.....+...+. .+.+||.||+....... +....+ -...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~----~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY----FNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT----HTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc----ccccHHHHHhc
Confidence 489999999999999999987532 3345667888888777777777 99999999997543221 111111 2356
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+++++||+|+......+......+.+..+.- ..++..+-+.+.|+|++.++..
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~-~sp~~~v~vfiHK~D~l~~~~r 129 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQ-YSPNIKVFVFIHKMDLLSEDER 129 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHH-HSTT-EEEEEEE-CCCS-HHHH
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHH-hCCCCeEEEEEeecccCCHHHH
Confidence 8999999999844456666666565555422 1123468999999999987654
No 305
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=7e-08 Score=100.36 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC----------------CcccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD----------------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~----------------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+-+||..+|||||-.+|+... ...+...+.|+....-...-....+--+|.||+..+
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY-- 130 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY-- 130 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH--
Confidence 45789999999999999999998521 123344566665543333323337778999999643
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
++.........|..++||.++++.+++..+++ -+.+++|+. .+++.+||+|++++.+.
T Consensus 131 ------IKNMItGaaqMDGaILVVaatDG~MPQTrEHl-LLArQVGV~-----~ivvfiNKvD~V~d~e~ 188 (449)
T KOG0460|consen 131 ------IKNMITGAAQMDGAILVVAATDGPMPQTREHL-LLARQVGVK-----HIVVFINKVDLVDDPEM 188 (449)
T ss_pred ------HHHhhcCccccCceEEEEEcCCCCCcchHHHH-HHHHHcCCc-----eEEEEEecccccCCHHH
Confidence 55556666779999999999998887777666 456788984 58999999999965544
No 306
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.64 E-value=4e-08 Score=103.52 Aligned_cols=119 Identities=24% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC---------c-----ccccccceecCeeEEEEECCc-----------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL---------F-----SDARLFATLDPRLKSVVLPSG----------------- 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v---------~-----~~~~~f~Tld~t~~~i~l~~~----------------- 344 (596)
....|+..|+.++|||||+-+|+--.. + -+-..+-|.+.+.+-+-+.++
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 457899999999999999988853210 0 000112222333332222222
Q ss_pred ------eeEeeeccceeeccchhhHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEE
Q 007599 345 ------KVLLSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIE 416 (596)
Q Consensus 345 ------~i~liDTpG~i~~lp~~lv~af~~tl~e~~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIv 416 (596)
-+.++||.|+... .+.|++.+. ..|..++|+.+.++...-..++ +-++-.+++ |+|+
T Consensus 196 v~~aDklVsfVDtvGHEpw--------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEH-Lgi~~a~~l------PviV 260 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPW--------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH-LGIALAMEL------PVIV 260 (527)
T ss_pred hhhcccEEEEEecCCccHH--------HHHHHHHHhccccceEEEEEEccCCcchhhhHh-hhhhhhhcC------CEEE
Confidence 2468999999754 344555543 4789999999988754333333 344445554 9999
Q ss_pred EEecCCCCCcccc
Q 007599 417 VWNKIDYHDEEMG 429 (596)
Q Consensus 417 VlNKiDlv~~~~~ 429 (596)
|++|||+.+++..
T Consensus 261 vvTK~D~~~ddr~ 273 (527)
T COG5258 261 VVTKIDMVPDDRF 273 (527)
T ss_pred EEEecccCcHHHH
Confidence 9999999987644
No 307
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.62 E-value=1.4e-07 Score=87.57 Aligned_cols=116 Identities=23% Similarity=0.348 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHH-HHHhc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLE-EVVEA 376 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~-e~~~a 376 (596)
..+.++|--|||||||+|.+.... ..++ ...|.....+.+.-.+-.+.+||.+|+.. |++..+ ..+..
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~-~~ed-miptvGfnmrk~tkgnvtiklwD~gGq~r---------frsmWerycR~v 89 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQ-YLED-MIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRGV 89 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeecc-chhh-hcccccceeEEeccCceEEEEEecCCCcc---------HHHHHHHHhhcC
Confidence 468999999999999999887532 1222 23344445555543333889999999964 444444 34668
Q ss_pred CEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 377 DLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 377 DliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+++++|||++++. .......+.++|..-.+ ...|+++..||+|+..+-
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l---~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSL---TGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhh---cCCcEEEecccccCcccc
Confidence 9999999999874 34445556666655433 336999999999997753
No 308
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.62 E-value=2.5e-08 Score=91.05 Aligned_cols=115 Identities=21% Similarity=0.233 Sum_probs=70.8
Q ss_pred EEcCCCCCHHHHHHHHHCCCCcccccccce--ecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHH-hHHHHHhc
Q 007599 302 VVGYTNAGKSTLVSALSDSDLFSDARLFAT--LDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEA 376 (596)
Q Consensus 302 LVG~tgAGKSTLLNaLtg~~v~~~~~~f~T--ld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~-tl~e~~~a 376 (596)
++|.++.|||.|+-++-...+...+. ..| ++....-+...+. ++++|||+|+.+ |++ |....+.|
T Consensus 2 llgds~~gktcllir~kdgafl~~~f-istvgid~rnkli~~~~~kvklqiwdtagqer---------frsvt~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNF-ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQER---------FRSVTHAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceecCce-eeeeeeccccceeccCCcEEEEEEeeccchHH---------HhhhhHhhhccc
Confidence 68999999999976554332222111 112 3333334444444 789999999964 433 55667889
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
|.++++.|+....+ .+.+..||.++.-..+....+.++.||||+..+...
T Consensus 72 ~allllydiankas---fdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v 121 (192)
T KOG0083|consen 72 DALLLLYDIANKAS---FDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAV 121 (192)
T ss_pred ceeeeeeecccchh---HHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcc
Confidence 99999999976533 334444554443222222357889999998665433
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.45 E-value=6.5e-07 Score=93.18 Aligned_cols=124 Identities=24% Similarity=0.302 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCccccc--------ccceecCeeEEEEECC-c---eeEeeeccceeeccch-----
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDAR--------LFATLDPRLKSVVLPS-G---KVLLSDTVGFISDLPL----- 360 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~--------~f~Tld~t~~~i~l~~-~---~i~liDTpG~i~~lp~----- 360 (596)
.+|.|+|.+|+|||||+|.|.+..+..... ...|.........+.. + .+.++|||||-..+..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 689999999999999999999976543321 1112222222333332 2 7889999998543221
Q ss_pred ----hhHHHHHHhHHHHH----------hcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 361 ----QLVDAFHATLEEVV----------EADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 361 ----~lv~af~~tl~e~~----------~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+...|...+.+-. ..|++||+++.+... .+.+. +.++.+.-. .++|-|+.|+|.+.
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls~~----vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLSKR----VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHTTT----SEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhccc----ccEEeEEecccccC
Confidence 11222333332211 357889999876432 23333 345555432 37899999999999
Q ss_pred cccc
Q 007599 426 EEMG 429 (596)
Q Consensus 426 ~~~~ 429 (596)
.++.
T Consensus 157 ~~el 160 (281)
T PF00735_consen 157 PEEL 160 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8766
No 310
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.45 E-value=5e-07 Score=87.38 Aligned_cols=56 Identities=38% Similarity=0.377 Sum_probs=43.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccce
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
+...++++|++|+|||||+|+|++... .+...+++|..... +.+ +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~-~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHL-DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEe-CCCEEEEECcCC
Confidence 347899999999999999999999765 55666777765432 233 347899999995
No 311
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.43 E-value=2.5e-06 Score=79.93 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccce-ecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFAT-LDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~T-ld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
.-.|.++|.-++|||.++..|+-.+..++.....| -|.....+..+.+ .+.+.||.|.-.. +..+... .
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~eLprh------y 81 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQELPRH------Y 81 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hhhhhHh------H
Confidence 46899999999999999999876555554444444 3555666666655 7899999998654 3343222 2
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+..+|..++|.+..++.+.+..+.+...++.. .+++..|+++..||+|+.++.+.
T Consensus 82 ~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~--KdKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 82 FQFADAFVLVYSPMDPESFQRVELLKKEIDKH--KDKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred hccCceEEEEecCCCHHHHHHHHHHHHHHhhc--cccccccEEEEechhhcccchhc
Confidence 34599999999988775544445555555442 34455799999999999765544
No 312
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=8.3e-07 Score=84.15 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=80.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
.-++.+.|--|||||||++.|-..... ..-.|++|++..+.+.+-.+..+|.-|+.. +-+.-......+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~---qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~q--------Arr~wkdyf~~v 88 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELSIGGMTFTTFDLGGHLQ--------ARRVWKDYFPQV 88 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc---ccCCCcCCChHHheecCceEEEEccccHHH--------HHHHHHHHHhhh
Confidence 357999999999999999998764321 234578999999888766999999999852 122233445568
Q ss_pred CEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 377 DLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 377 DliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
|.+++.+|+.+.. ..+.......+|..-.+ ...|+++..||+|...+.
T Consensus 89 ~~iv~lvda~d~er~~es~~eld~ll~~e~l---a~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 89 DAIVYLVDAYDQERFAESKKELDALLSDESL---ATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ceeEeeeehhhHHHhHHHHHHHHHHHhHHHH---hcCcceeecccccCCCcc
Confidence 9999999997642 22222333233322222 335999999999998764
No 313
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=4.2e-07 Score=84.22 Aligned_cols=115 Identities=19% Similarity=0.281 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
.++.++|--|+||||++-++---++.... .|.......+.+.+-++.+||.-|.-+.-|- .+. ...+.|
T Consensus 19 ~rililgldGaGkttIlyrlqvgevvttk---Ptigfnve~v~yKNLk~~vwdLggqtSirPy-----WRc---Yy~dt~ 87 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVVTTK---PTIGFNVETVPYKNLKFQVWDLGGQTSIRPY-----WRC---YYADTD 87 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCcccccC---CCCCcCccccccccccceeeEccCcccccHH-----HHH---Hhcccc
Confidence 57889999999999988766433322211 1223344455665558899998887543332 222 234588
Q ss_pred EEEEEEeCCCCCh-HHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 378 LLVHVLDCTAPNL-EEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 378 liL~VvDas~~~~-~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+++|||.++.+. ......+..+|.+-.+.+ ..+++++||.|....
T Consensus 88 avIyVVDssd~dris~a~~el~~mL~E~eLq~---a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 88 AVIYVVDSSDRDRISIAGVELYSMLQEEELQH---AKLLVFANKQDYSGA 134 (182)
T ss_pred eEEEEEeccchhhhhhhHHHHHHHhccHhhcC---ceEEEEeccccchhh
Confidence 9999999987531 122233445555544433 368899999997554
No 314
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.38 E-value=9.9e-07 Score=83.96 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=42.1
Q ss_pred eeEeeeccceeeccchhhHHHH--HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af--~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
+.+++||||... |..+...+ ...+......|.++.|+|+... .........+..++...+ ++|+||+|
T Consensus 88 d~I~IEt~G~~~--p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~--~~~~~~~~~~~~Qi~~ad------~ivlnk~d 157 (158)
T cd03112 88 DRIVIETTGLAD--PGPVAQTFFMDEELAERYLLDGVITLVDAKHA--NQHLDQQTEAQSQIAFAD------RILLNKTD 157 (158)
T ss_pred CEEEEECCCcCC--HHHHHHHHhhchhhhcceeeccEEEEEEhhHh--HHHhhccHHHHHHHHHCC------EEEEeccc
Confidence 678999999974 44444443 2234455668999999998653 222211222334444332 67999999
Q ss_pred C
Q 007599 423 Y 423 (596)
Q Consensus 423 l 423 (596)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 315
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.37 E-value=1.8e-06 Score=89.58 Aligned_cols=58 Identities=29% Similarity=0.285 Sum_probs=45.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-CcccccccceecCeeEEEEECCceeEeeeccceee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
....++++|++|+|||||+|+|++.. ..+...+++|.... .+.+ +..+.++||||+..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPG~~~ 175 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKL-SDGLELLDTPGILW 175 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEe-CCCEEEEECCCccc
Confidence 34789999999999999999999876 35566777777654 3333 34689999999964
No 316
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.37 E-value=5.4e-07 Score=85.11 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
..|+++|.+|+|||||+|+|.+... .+...+++|.... .+.+ +..+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITL-MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEc-CCCEEEEECcCC
Confidence 6789999999999999999999764 4555566665432 2222 236899999995
No 317
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.36 E-value=1.7e-06 Score=90.29 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=46.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
...+++++|++|+|||||+|+|++... .+.+.+++|.... .+.+ +..+.++||||+..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKL-GKGLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEe-CCcEEEEECCCcCC
Confidence 347899999999999999999999775 5667778877754 2333 34789999999964
No 318
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=9.5e-07 Score=83.05 Aligned_cols=120 Identities=23% Similarity=0.206 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC------c-----eeEeeeccceeeccchhhHHHHH
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS------G-----KVLLSDTVGFISDLPLQLVDAFH 367 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~------~-----~i~liDTpG~i~~lp~~lv~af~ 367 (596)
+...+|.+|+||||++...+...+...-.....++.....+.+.. + .+.+|||+|+.++ ..+
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF--RSL----- 83 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF--RSL----- 83 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH--HHH-----
Confidence 455689999999999988776542211111112344444444431 1 4678999999653 122
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccc-CCcEEEEEecCCCCCcccc
Q 007599 368 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEK-LKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 368 ~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~-~~PiIvVlNKiDlv~~~~~ 429 (596)
|..-.+.|=..++++|.+. ++..-.+.+||.++....-. ..-+|+..||+|+.+....
T Consensus 84 -TTAFfRDAMGFlLiFDlT~---eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V 142 (219)
T KOG0081|consen 84 -TTAFFRDAMGFLLIFDLTS---EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV 142 (219)
T ss_pred -HHHHHHhhccceEEEeccc---hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh
Confidence 3333455667788899875 35556667788777653222 2248899999999765443
No 319
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.30 E-value=1e-05 Score=81.45 Aligned_cols=91 Identities=24% Similarity=0.073 Sum_probs=56.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCC--CCccccc-ccceecCeeEEEEEC---CceeEeeeccceeeccchhhHHHHHH
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDS--DLFSDAR-LFATLDPRLKSVVLP---SGKVLLSDTVGFISDLPLQLVDAFHA 368 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~--~v~~~~~-~f~Tld~t~~~i~l~---~~~i~liDTpG~i~~lp~~lv~af~~ 368 (596)
.+..+|+|+|++++|||||+|.|+|. .+.+... ..+|.........+. +..++++||+|+...-... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--FEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc--hhhhh
Confidence 46789999999999999999999998 4333222 334443333333332 2389999999996432111 01111
Q ss_pred hHHHHH--hcCEEEEEEeCCC
Q 007599 369 TLEEVV--EADLLVHVLDCTA 387 (596)
Q Consensus 369 tl~e~~--~aDliL~VvDas~ 387 (596)
.+..+. .+|++++.++...
T Consensus 83 ~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcc
Confidence 222222 4899999887653
No 320
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.30 E-value=3e-06 Score=79.97 Aligned_cols=56 Identities=32% Similarity=0.326 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccce
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
+...++++|++|+|||||+|+|++... .+...+++|.+.... .+ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KL-DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Ee-cCCEEEEECCCC
Confidence 357899999999999999999999763 455566777766533 22 246899999996
No 321
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=5.7e-06 Score=76.54 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHH-HHHhc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLE-EVVEA 376 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~-e~~~a 376 (596)
..|..+|-.+|||||++..|.-.... ....|....+..+.+.+-.+.+||.-|.-.. +-..+ .....
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~---~~ipTvGFnvetVtykN~kfNvwdvGGqd~i---------RplWrhYy~gt 85 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQDKI---------RPLWRHYYTGT 85 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCc---ccccccceeEEEEEeeeeEEeeeeccCchhh---------hHHHHhhccCC
Confidence 57889999999999999998754311 1123445566778887778999998887422 11111 23446
Q ss_pred CEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 377 DLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 377 DliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
..++||+|+.+.+ .++....+..++..-.+ ...|+++..||-|+.++..
T Consensus 86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em---~~~~~LvlANkQDlp~A~~ 135 (180)
T KOG0071|consen 86 QGLIFVVDSADRDRIEEARNELHRIINDREM---RDAIILILANKQDLPDAMK 135 (180)
T ss_pred ceEEEEEeccchhhHHHHHHHHHHHhCCHhh---hcceEEEEecCcccccccC
Confidence 7899999987642 33334444444433333 3458999999999987643
No 322
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.6e-06 Score=98.01 Aligned_cols=116 Identities=21% Similarity=0.184 Sum_probs=73.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCCccccc----------------ccceecCeeEEEEECCceeEeeeccceeecc
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDAR----------------LFATLDPRLKSVVLPSGKVLLSDTVGFISDL 358 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~----------------~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l 358 (596)
.++.+++++-|..+|||||...|...+..+... .+.|.....-.....+-.+.+||+|||+.+
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf- 85 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF- 85 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch-
Confidence 478999999999999999999998765333222 233333332222122237899999999864
Q ss_pred chhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 359 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 359 p~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..... .....+|.++.++|+..+...+ +..+..-...-++ .+|+|+||||++-
T Consensus 86 ----~sevs---sas~l~d~alvlvdvvegv~~q-t~~vlrq~~~~~~------~~~lvinkidrl~ 138 (887)
T KOG0467|consen 86 ----SSEVS---SASRLSDGALVLVDVVEGVCSQ-TYAVLRQAWIEGL------KPILVINKIDRLI 138 (887)
T ss_pred ----hhhhh---hhhhhcCCcEEEEeeccccchh-HHHHHHHHHHccC------ceEEEEehhhhHH
Confidence 11121 2344599999999999885443 3333331112222 5799999999643
No 323
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.27 E-value=1.3e-06 Score=81.08 Aligned_cols=54 Identities=31% Similarity=0.445 Sum_probs=40.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeecccee
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFI 355 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i 355 (596)
.++++|.+|+|||||+|+|++... .....++.|.+.. .+.+. +.+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFLT-PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceE--EEEeC-CCEEEEECCCcC
Confidence 699999999999999999999764 3444455555433 34443 368999999985
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.26 E-value=8.1e-07 Score=86.49 Aligned_cols=54 Identities=39% Similarity=0.327 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC---------cccccccceecCeeEEEEECCceeEeeeccce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL---------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v---------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
..++++|.+|+|||||+|+|.+... .+...+++|.++....+ . ..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--G-NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--C-CCCEEEeCcCC
Confidence 4799999999999999999998542 34566677777653333 2 26899999996
No 325
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.24 E-value=3.8e-06 Score=82.09 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.9
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHHHHH
Q 007599 535 QHAPDVKISARTGVGLQELLEIIDERL 561 (596)
Q Consensus 535 ~~~~vv~vSA~tG~Gi~eLl~~I~~~~ 561 (596)
.+.|++.+|++||+|++++++.|...+
T Consensus 174 p~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 174 PEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 567899999999999999999987654
No 326
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.23 E-value=8.5e-07 Score=84.86 Aligned_cols=120 Identities=20% Similarity=0.162 Sum_probs=79.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCccccc-ccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDAR-LFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~-~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+.|+|.-++||||++++.+.. ++..++ .....+...+.+.+.+. .+.+|||.|+.++ . ..|....
T Consensus 20 aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEf------D--aItkAyy 90 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF------D--AITKAYY 90 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhH------H--HHHHHHh
Confidence 478999999999999999999964 333332 23334555555555544 6779999999653 1 2244456
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+.|...++|+..++. ...+.+.+|-..+.... ...|.++|-||||+++....
T Consensus 91 rgaqa~vLVFSTTDr---~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~ 142 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDR---YSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQM 142 (246)
T ss_pred ccccceEEEEecccH---HHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhc
Confidence 678888888877664 33344444444432211 12599999999999987765
No 327
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.22 E-value=5.7e-06 Score=76.60 Aligned_cols=119 Identities=23% Similarity=0.225 Sum_probs=80.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
-.++.++|--||||||+++.|.+.++. .+..|-...+..+.+.+. .+.+||.-|....-|. ... ...+
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~~---hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpy-----WsN---Yyen 85 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDPR---HLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPY-----WSN---YYEN 85 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCChh---hccccCCcceEEEeecCcEEEEEEecCCccccchh-----hhh---hhhc
Confidence 478999999999999999999997632 112233344556667665 8999999887543222 112 2345
Q ss_pred cCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 376 ADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 376 aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.|.+++|+|..+.. .++.-+...+++++..+.. .|+.+..||-|++.+...
T Consensus 86 vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~---vpvlIfankQdlltaa~~ 137 (185)
T KOG0074|consen 86 VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE---VPVLIFANKQDLLTAAKV 137 (185)
T ss_pred cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc---cceeehhhhhHHHhhcch
Confidence 89999999976542 3333445555666555433 599999999999876544
No 328
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.21 E-value=8.2e-07 Score=89.64 Aligned_cols=124 Identities=27% Similarity=0.261 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+...|+++|.|.+|||||+..|+|..-.+..+.|+|+....+.+.+.+.++.+.|.||+|+.... -.+..+..+...+.
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakd-gkgrg~qviavart 136 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKD-GKGRGKQVIAVART 136 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhccccc-CCCCccEEEEEeec
Confidence 44689999999999999999999987778888899998888888888779999999999864221 11122233333455
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
|.+++.|+|+..|. .+...+...|+-+|+......|-|. +.|-|+
T Consensus 137 cnli~~vld~~kp~--~hk~~ie~eleg~girlnk~pp~i~-~kkKdk 181 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPL--SHKKIIEKELEGFGIRLNKQPPNIG-TKKKDK 181 (358)
T ss_pred ccEEEEEeeccCcc--cHHHHHHHhhhcceeeccCCCCCcc-cccccc
Confidence 89999999999873 4556677889999987655555544 444454
No 329
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.20 E-value=6.1e-06 Score=79.18 Aligned_cols=55 Identities=27% Similarity=0.263 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccce
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
.+.++++|.+|+|||||+|+|++... .....+++|...... .+. ..+.++||||+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~--~~~-~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWI--KIS-PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEE--Eec-CCEEEEECCCC
Confidence 47899999999999999999999764 445556777665433 332 46889999997
No 330
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.19 E-value=2e-06 Score=82.26 Aligned_cols=59 Identities=25% Similarity=0.244 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCc----cccc--ccceecCeeEEEEECCceeEeeeccceeec
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLF----SDAR--LFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~----~~~~--~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
.+++++|++|+|||||+|+|.+.... +... .+.-+.....-+.+++ ...++|||||-+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCcc
Confidence 58999999999999999999997421 1111 2211112233344433 4789999999654
No 331
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.14 E-value=1.7e-06 Score=85.01 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC-Cc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP-SG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~-~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..+++|||..++|||+|+...+.. .+.+.+..+-.+.....+... +. .+.+|||+|+..+- .++ ....
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD------rlR--plsY 74 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD------RLR--PLSY 74 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccc------ccc--ccCC
Confidence 368999999999999999888775 445555444456666777775 55 67899999997651 111 1134
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|+++.++++.++..-+. ...+|+-++.-.. +..|+|+|.+|.||.++
T Consensus 75 ~~tdvfl~cfsv~~p~S~~n--v~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 75 PQTDVFLLCFSVVSPESFEN--VKSKWIPEIKHHC-PNVPIILVGTKADLRDD 124 (198)
T ss_pred CCCCEEEEEEEcCChhhHHH--HHhhhhHHHHhhC-CCCCEEEEeehHHhhhC
Confidence 56899998888887743332 1223333332111 33599999999999843
No 332
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=3.2e-06 Score=86.25 Aligned_cols=102 Identities=22% Similarity=0.196 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchh--hHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ--LVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~--lv~af~~tl~e~~~ 375 (596)
-.++|+||||||||||+++++|. +.|..+.+.+.+..+.-......+.++|+. +...|..|..++..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl-----------l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~ 99 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL-----------LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL 99 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-----------CcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHH
Confidence 58999999999999999999996 567788888766533333322334444553 23346666666555
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKL 411 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~ 411 (596)
....-..--... ....+.+.+.+.|+.+|+.+..+
T Consensus 100 ~g~~~~~g~~~~-~~~~d~~~v~~aL~~Vgm~~~~~ 134 (254)
T COG1121 100 LGRYGKKGWFRR-LNKKDKEKVDEALERVGMEDLRD 134 (254)
T ss_pred ccCccccccccc-ccHHHHHHHHHHHHHcCchhhhC
Confidence 432211100011 13445678889999999865443
No 333
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=5.5e-06 Score=87.90 Aligned_cols=57 Identities=35% Similarity=0.415 Sum_probs=43.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceee
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
...|.++|+||+|||||+|+|.+... .++..++.|.... .+.+. ..+.++||||++-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~-~~i~LlDtPGii~ 189 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLD-DGIYLLDTPGIIP 189 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcC-CCeEEecCCCcCC
Confidence 36799999999999999999999875 5566676665543 33332 2589999999973
No 334
>PRK12288 GTPase RsgA; Reviewed
Probab=98.09 E-value=2.9e-06 Score=90.82 Aligned_cols=58 Identities=22% Similarity=0.166 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCc-ccccc---cceecCee--EEEEECCceeEeeeccceeec
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLF-SDARL---FATLDPRL--KSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~---f~Tld~t~--~~i~l~~~~i~liDTpG~i~~ 357 (596)
+++++|++|+|||||+|+|++.... +.... ....++|. .-+.++++ ..++||||+.+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~-~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG-GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC-CEEEECCCCCcc
Confidence 5799999999999999999986532 21111 11112221 22333333 459999999764
No 335
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.07 E-value=3.1e-06 Score=86.35 Aligned_cols=55 Identities=27% Similarity=0.265 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCc-cccc-------ccceecCeeEEEEECCceeEeeeccceeec
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLF-SDAR-------LFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~-------~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
.++++|++|+|||||+|+|.+.... +.+. ..+|..... +.+. ...++||||+...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~--~~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFH--GGLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcC--CcEEEeCCCcccc
Confidence 7899999999999999999986422 1111 113333322 3332 3489999999763
No 336
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.1e-05 Score=88.63 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=87.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...+||+||++|+|||||+..|...- .-.|++...+.+.+-.+ .+++...|. + +.+....
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~------tk~ti~~i~GPiTvvsgK~RRiTflEcp~-------D----l~~miDv 130 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRF------TKQTIDEIRGPITVVSGKTRRITFLECPS-------D----LHQMIDV 130 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHH------HHhhhhccCCceEEeecceeEEEEEeChH-------H----HHHHHhH
Confidence 45688899999999999999998741 11234444444444433 677766652 2 2333445
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccccccccccc-ccccccccccCCC
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGDVEYIDGDD-ISNFSRAEDKDTT 451 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~~~~~~~~~-~~~~~sa~~~~gi 451 (596)
..-||++++++|..-+- +-..-..+++|..-|++ .++.|++..|+...... ...+...+ ..+|+....+..+
T Consensus 131 aKIaDLVlLlIdgnfGf-EMETmEFLnil~~HGmP-----rvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKl 203 (1077)
T COG5192 131 AKIADLVLLLIDGNFGF-EMETMEFLNILISHGMP-----RVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKL 203 (1077)
T ss_pred HHhhheeEEEeccccCc-eehHHHHHHHHhhcCCC-----ceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceE
Confidence 56699999999998763 33334455788888873 47889999999765432 22222222 2344444444444
Q ss_pred ccccccccccC
Q 007599 452 SEPVDVECIDN 462 (596)
Q Consensus 452 ~~L~~~~~~~~ 462 (596)
-.|+.+.++.|
T Consensus 204 FylsgV~nGRY 214 (1077)
T COG5192 204 FYLSGVENGRY 214 (1077)
T ss_pred EEecccccCCC
Confidence 45554444444
No 337
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=2.2e-06 Score=88.25 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC---cccccccceec-----------------------------CeeEEEEECCc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLD-----------------------------PRLKSVVLPSG 344 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld-----------------------------~t~~~i~l~~~ 344 (596)
..+|+-+||.-+||||++++++|-.. ..+-..-.|+. +..-....++.
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 47899999999999999999998531 00000001100 00000111110
Q ss_pred --------eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEE
Q 007599 345 --------KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIE 416 (596)
Q Consensus 345 --------~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIv 416 (596)
.+.++|.||+- .. ....+....-.|.+++++.+..+..+.+...-+...+-+.+ +.+|+
T Consensus 118 ~~~~klvRHVSfVDCPGHD------iL--MaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-----khiii 184 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHD------IL--MATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-----KHIII 184 (466)
T ss_pred CCceEEEEEEEeccCCchH------HH--HHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----ceEEE
Confidence 35688888883 11 22345555567888888877776444444333333333333 46899
Q ss_pred EEecCCCCCcccc
Q 007599 417 VWNKIDYHDEEMG 429 (596)
Q Consensus 417 VlNKiDlv~~~~~ 429 (596)
+-||+|++.++++
T Consensus 185 lQNKiDli~e~~A 197 (466)
T KOG0466|consen 185 LQNKIDLIKESQA 197 (466)
T ss_pred EechhhhhhHHHH
Confidence 9999999988766
No 338
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.00 E-value=3.5e-05 Score=94.57 Aligned_cols=126 Identities=18% Similarity=0.114 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccc----eecCeeEEEEE-CCceeEeeeccceeeccc------hhhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFA----TLDPRLKSVVL-PSGKVLLSDTVGFISDLP------LQLVD 364 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~----Tld~t~~~i~l-~~~~i~liDTpG~i~~lp------~~lv~ 364 (596)
..|...|+|++||||||||+.- |........... +... ++.+.+ ...+.+++||+|....-+ ...-.
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~-t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGG-TRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCC-CcccceEecCCEEEEcCCCccccCCCcccccHHHHH
Confidence 5799999999999999999886 554432221111 1111 112222 234678999999653211 11122
Q ss_pred HHHHhHHHH---HhcCEEEEEEeCCCCC---hH-------HHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 365 AFHATLEEV---VEADLLVHVLDCTAPN---LE-------EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 365 af~~tl~e~---~~aDliL~VvDas~~~---~~-------~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.|-..+... .-.+.||+++|+.+-. .. .-...+.++...+|+. .|+-+|++|||++..-
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~----~PVYvv~Tk~Dll~GF 259 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR----FPVYLVLTKADLLAGF 259 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC----CCEEEEEecchhhcCH
Confidence 233333333 3479999999976521 11 1123344555556664 4999999999998764
No 339
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.00 E-value=1.2e-06 Score=90.89 Aligned_cols=100 Identities=56% Similarity=0.691 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHhCCCccc------hhH----HHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCch
Q 007599 160 LSGIQQRNLERAWGKPVLD------RVG----LIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGE 229 (596)
Q Consensus 160 Lsp~Q~~nle~~~~~~v~D------R~~----lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~ 229 (596)
+...|++|+.+.|-++|.| +.+ ||..||++||.+..+..|.++|-++|++.|+.+.+..-+..+++.+++
T Consensus 15 vdtl~~~nvv~t~~kpv~~~rk~~~gsGn~e~Li~~i~aa~at~~f~nv~a~~a~~~~ek~r~~~VrvfDr~~~vl~if~ 94 (410)
T KOG0410|consen 15 VDTLQQRNVVRTWAKPVLDNRKTYIGSGNVEELIIEIFAAHATTKFANVQAELAALMYEKSRLVRVRVFDRRHTVLQIFE 94 (410)
T ss_pred HHhhccchhhhheeeeccCCcceeeecCcHHHHHHHHhcCccceeeecccccchhHHHHHhhhcceeeecchhhHHHHHH
Confidence 4567999999999999999 776 999999999999999999999999999999988766555444444444
Q ss_pred hhhhhhccCC---CCCCCccCCCchhHHHHHHH
Q 007599 230 AEVVSARGRG---SGGRGFISGAGETELQLQRR 259 (596)
Q Consensus 230 ~e~~~~~~~~---~g~~g~~~g~gE~~~e~~rr 259 (596)
.+....+.+- ..+.++.+|.+++.+...+|
T Consensus 95 q~a~T~earlqvalAempy~~~rl~r~~~hl~r 127 (410)
T KOG0410|consen 95 QEAVTAEARLQVALAEMPYVGGRLERELQHLRR 127 (410)
T ss_pred HHhhhHHHHHhhhhhcCccccchHHHHHHHHHh
Confidence 4444333321 12345667888888877776
No 340
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.00 E-value=1.9e-05 Score=74.25 Aligned_cols=44 Identities=30% Similarity=0.511 Sum_probs=29.7
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++..... ..+...+...+ +|+|+|+||+|+.+
T Consensus 12 ~aD~vl~V~D~~~~~~~~~-~~l~~~~~~~~------~p~iiv~NK~Dl~~ 55 (156)
T cd01859 12 ESDVVLEVLDARDPELTRS-RKLERYVLELG------KKLLIVLNKADLVP 55 (156)
T ss_pred hCCEEEEEeeCCCCcccCC-HHHHHHHHhCC------CcEEEEEEhHHhCC
Confidence 4999999999987643222 22333333322 49999999999854
No 341
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.97 E-value=4.4e-05 Score=84.76 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=74.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccc--c-ccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDA--R-LFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~--~-~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~ 371 (596)
...+|+|+|.-|+|||||+-+|+..+...+- . +..|+... ..+.. ...++||.--... -.....
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPad----vtPe~vpt~ivD~ss~~~~--------~~~l~~ 75 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPAD----VTPENVPTSIVDTSSDSDD--------RLCLRK 75 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCc----cCcCcCceEEEecccccch--------hHHHHH
Confidence 3478999999999999999999997642211 1 11222211 11223 5788998633211 112245
Q ss_pred HHHhcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 372 EVVEADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+++.||++.+|.+++++..-+. ...++-.+.+..-. ....|+|+|.||+|.......
T Consensus 76 EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~-~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 76 EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGD-YHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCC-CccCCEEEEeeccCCcccccc
Confidence 6777999999998887633222 23333344444311 234699999999999876644
No 342
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.96 E-value=8.9e-06 Score=87.61 Aligned_cols=56 Identities=36% Similarity=0.392 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC------CcccccccceecCeeEEEEECCceeEeeeccceee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
..|.++|.+|+|||||+|+|++.. ..+...+++|++.. .+.+ ++.+.++||||+..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEe-CCCCEEEECCCCCC
Confidence 479999999999999999999853 24556677776644 2333 23578999999974
No 343
>PRK12289 GTPase RsgA; Reviewed
Probab=97.95 E-value=1.5e-05 Score=85.54 Aligned_cols=56 Identities=30% Similarity=0.295 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCC-ccccccc-------ceecCeeEEEEECCceeEeeeccceeec
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDL-FSDARLF-------ATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f-------~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
+++|+|++|+|||||+|+|.+... .+..... +|.+. .-+.++++ ..++||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~--~l~~l~~g-~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV--ELFELPNG-GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee--EEEECCCC-cEEEeCCCcccc
Confidence 589999999999999999998642 2222222 23222 22333333 479999999643
No 344
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=7.2e-06 Score=86.41 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCc--------------ccccccceecCe---------eEEEEECC-----------
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLF--------------SDARLFATLDPR---------LKSVVLPS----------- 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~--------------~~~~~f~Tld~t---------~~~i~l~~----------- 343 (596)
..||++|-..+|||||+-.|+..... -+-+.+.|.... -.-+.+..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 58999999999999999988753210 000111111110 01111111
Q ss_pred -ceeEeeeccceeeccchhhHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEec
Q 007599 344 -GKVLLSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 420 (596)
Q Consensus 344 -~~i~liDTpG~i~~lp~~lv~af~~tl~e~~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNK 420 (596)
.-+.++|.+|+..+... |...+. -.|.+++|+.+..+......+ -+.+...+++ |++++++|
T Consensus 248 SKlvTfiDLAGh~kY~~T--------Ti~gLtgY~Ph~A~LvVsA~~Gi~~tTrE-HLgl~~AL~i------PfFvlvtK 312 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKT--------TIHGLTGYTPHFACLVVSADRGITWTTRE-HLGLIAALNI------PFFVLVTK 312 (591)
T ss_pred cceEEEeecccchhhhee--------eeeecccCCCceEEEEEEcCCCCccccHH-HHHHHHHhCC------CeEEEEEe
Confidence 13678999998765322 222111 268899999988764333333 3355666665 99999999
Q ss_pred CCCCCcccc
Q 007599 421 IDYHDEEMG 429 (596)
Q Consensus 421 iDlv~~~~~ 429 (596)
+|+++....
T Consensus 313 ~Dl~~~~~~ 321 (591)
T KOG1143|consen 313 MDLVDRQGL 321 (591)
T ss_pred eccccchhH
Confidence 999987544
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.94 E-value=2.6e-05 Score=73.67 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 370 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 370 l~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+..+..+|++++|+|++.|.. .....+.+.|... ...+|+|+|+||+|+.+.+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~-~~~~~i~~~l~~~----~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMG-TRCKHVEEYLKKE----KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcc-ccCHHHHHHHHhc----cCCCCEEEEEEchhcCCHH
Confidence 345667999999999998742 2334555666542 1225899999999997543
No 346
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0001 Score=77.97 Aligned_cols=128 Identities=23% Similarity=0.297 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc---cccc------------------cccee--cC--e--------------e
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---SDAR------------------LFATL--DP--R--------------L 336 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~---~~~~------------------~f~Tl--d~--t--------------~ 336 (596)
..|.|.++|.-..||||+++.|+..+.. +... ++.++ ++ . .
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 4599999999999999999999986532 0000 00000 00 0 0
Q ss_pred EEEEECCc---eeEeeeccceeeccchhhHH--HHHHhHHH-HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccc
Q 007599 337 KSVVLPSG---KVLLSDTVGFISDLPLQLVD--AFHATLEE-VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEK 410 (596)
Q Consensus 337 ~~i~l~~~---~i~liDTpG~i~~lp~~lv~--af~~tl~e-~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~ 410 (596)
....+++. .+.++||||+.+.-.+.... .|...++. +..+|.|++++|+..-+.......+...|+. .+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~E-- 211 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HE-- 211 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Cc--
Confidence 00111221 46799999986532221111 13333332 3459999999998765555555555444432 22
Q ss_pred CCcEEEEEecCCCCCcccc
Q 007599 411 LKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 411 ~~PiIvVlNKiDlv~~~~~ 429 (596)
..+=+|+||+|.++..+.
T Consensus 212 -dkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 212 -DKIRVVLNKADQVDTQQL 229 (532)
T ss_pred -ceeEEEeccccccCHHHH
Confidence 257789999999987654
No 347
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.92 E-value=1.2e-05 Score=83.68 Aligned_cols=59 Identities=27% Similarity=0.252 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC----cccccccceecC--eeEEEEECCceeEeeeccceeec
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL----FSDARLFATLDP--RLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v----~~~~~~f~Tld~--t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
.+.+++|.+|+|||||+|+|.+... .++....-..++ ...-+.+++ .-.++|||||.+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-gG~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-GGWIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-CCEEEeCCCCCcc
Confidence 3899999999999999999998431 122222122222 233344432 3468999999654
No 348
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.90 E-value=8.8e-06 Score=81.14 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|.++|.+||||||+=..+....+ .-...+++|+|....++.+-|+ -+.+||--|+..+.-..+... .-.-...
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q---~d~iF~n 81 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQ---EDNIFRN 81 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhc---chhhhee
Confidence 5799999999999998655543221 2345678889988888888877 888999988854322111111 1112345
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.+++++|.|++......+.......|+.+-- ..+...+.+.+.|+|++..+..
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~-~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQ-NSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHh-cCCcceEEEEEeechhcccchH
Confidence 7899999999887777777777777766532 2233468889999999987654
No 349
>PRK13796 GTPase YqeH; Provisional
Probab=97.88 E-value=1.2e-05 Score=86.74 Aligned_cols=55 Identities=36% Similarity=0.388 Sum_probs=40.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCC------CcccccccceecCeeEEEEECCceeEeeeccceee
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSD------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
.+.+||.+|+|||||+|+|.+.. +.++..+++|++.. .+.+.+ ...++||||++.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~-~~~l~DTPGi~~ 222 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDD-GSFLYDTPGIIH 222 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCC-CcEEEECCCccc
Confidence 68999999999999999998642 23456677776643 233333 468999999974
No 350
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.87 E-value=1.7e-05 Score=78.34 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCe----------------eEEEEE------------------C
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPR----------------LKSVVL------------------P 342 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t----------------~~~i~l------------------~ 342 (596)
.+|++||++|+||||.+-.|...-. ........|.|.. ...... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4799999999999999988864310 0111112222220 000000 0
Q ss_pred C-ceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecC
Q 007599 343 S-GKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKI 421 (596)
Q Consensus 343 ~-~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKi 421 (596)
. .+++++||||.....+ .....+...+ .....+-+++|++++.. .+....+....+.+++. =++++|.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~-~~~~el~~~~-~~~~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~-------~lIlTKl 150 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDE-ELLEELKKLL-EALNPDEVHLVLSATMG--QEDLEQALAFYEAFGID-------GLILTKL 150 (196)
T ss_dssp TTSSEEEEEE-SSSSTHH-HHHHHHHHHH-HHHSSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTC-------EEEEEST
T ss_pred cCCCEEEEecCCcchhhH-HHHHHHHHHh-hhcCCccceEEEecccC--hHHHHHHHHHhhcccCc-------eEEEEee
Confidence 1 2689999999864322 2333344333 33467889999998764 34445566666666653 3569999
Q ss_pred CCCCc
Q 007599 422 DYHDE 426 (596)
Q Consensus 422 Dlv~~ 426 (596)
|-...
T Consensus 151 Det~~ 155 (196)
T PF00448_consen 151 DETAR 155 (196)
T ss_dssp TSSST
T ss_pred cCCCC
Confidence 97554
No 351
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.86 E-value=9.6e-05 Score=76.70 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=43.6
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHh------cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVE------ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~------aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
+++++||||.... ...+........+ ... +|.+++|+|++.+ .+....+....+.+++ .-+|+
T Consensus 156 D~ViIDT~G~~~~-d~~~~~el~~~~~-~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~-------~g~Il 224 (272)
T TIGR00064 156 DVVLIDTAGRLQN-KVNLMDELKKIKR-VIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGL-------TGIIL 224 (272)
T ss_pred CEEEEeCCCCCcc-hHHHHHHHHHHHH-HHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCC-------CEEEE
Confidence 7899999998643 2233333333222 223 7889999999754 3344444455544543 46889
Q ss_pred ecCCCCCc
Q 007599 419 NKIDYHDE 426 (596)
Q Consensus 419 NKiDlv~~ 426 (596)
||+|....
T Consensus 225 TKlDe~~~ 232 (272)
T TIGR00064 225 TKLDGTAK 232 (272)
T ss_pred EccCCCCC
Confidence 99997543
No 352
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.85 E-value=7.3e-05 Score=79.34 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCccc----cccc----ceecCeeEEEEECC-c---eeEeeeccceeeccch----
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSD----ARLF----ATLDPRLKSVVLPS-G---KVLLSDTVGFISDLPL---- 360 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~----~~~f----~Tld~t~~~i~l~~-~---~i~liDTpG~i~~lp~---- 360 (596)
..+|-++|.+|.||||++|.|.+..+..+ +... .|+........+.+ + .+.++|||||..++..
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 47999999999999999999999743222 1111 22222233333333 3 7889999999654322
Q ss_pred -----hhHHHHHHhHHHH-----------HhcCEEEEEEeCC-CCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 361 -----QLVDAFHATLEEV-----------VEADLLVHVLDCT-APNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 361 -----~lv~af~~tl~e~-----------~~aDliL~VvDas-~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
.+...|...+.+= ...+++|+.+-.+ ++...-....+..+-+.+ .+|-|+-|+|.
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v--------NlIPVI~KaD~ 174 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV--------NLIPVIAKADT 174 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc--------Ceeeeeecccc
Confidence 1111222222110 1246777777644 333344444443333332 57889999999
Q ss_pred CCcccc
Q 007599 424 HDEEMG 429 (596)
Q Consensus 424 v~~~~~ 429 (596)
+..+++
T Consensus 175 lT~~El 180 (373)
T COG5019 175 LTDDEL 180 (373)
T ss_pred CCHHHH
Confidence 988766
No 353
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.84 E-value=0.00012 Score=80.21 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=65.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH------CCCCc--cccc-c---------cce-ecCeeEEEEE----------------
Q 007599 297 LATVAVVGYTNAGKSTLVSALS------DSDLF--SDAR-L---------FAT-LDPRLKSVVL---------------- 341 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLt------g~~v~--~~~~-~---------f~T-ld~t~~~i~l---------------- 341 (596)
..+|+++|.+|+||||++..|+ |..+. ..|. . .+. ..........
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999997 43321 1111 0 000 0000000000
Q ss_pred -CCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHH-HHcCCCcccCCcEEEEEe
Q 007599 342 -PSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVL-QQVGVSEEKLKNMIEVWN 419 (596)
Q Consensus 342 -~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL-~~lgi~~~~~~PiIvVlN 419 (596)
.+.+++++||||.... -..+....... .....+|.+++|+|++.+. .....+ +.+ +.++ +--+|+|
T Consensus 180 ~~~~DvViIDTaGr~~~-d~~lm~El~~i-~~~~~p~e~lLVlda~~Gq--~a~~~a-~~F~~~~~-------~~g~IlT 247 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQ-EDSLFEEMLQV-AEAIQPDNIIFVMDGSIGQ--AAEAQA-KAFKDSVD-------VGSVIIT 247 (429)
T ss_pred hCCCCEEEEECCCCCcc-hHHHHHHHHHH-hhhcCCcEEEEEeccccCh--hHHHHH-HHHHhccC-------CcEEEEE
Confidence 0127899999997532 12333333332 2345678899999987652 222222 222 2233 4578899
Q ss_pred cCCCCCc
Q 007599 420 KIDYHDE 426 (596)
Q Consensus 420 KiDlv~~ 426 (596)
|+|-...
T Consensus 248 KlD~~ar 254 (429)
T TIGR01425 248 KLDGHAK 254 (429)
T ss_pred CccCCCC
Confidence 9997543
No 354
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.84 E-value=7.2e-06 Score=84.01 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|+||||||||+++|+|. +.|..+.+.+.+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~ 64 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGK 64 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCC
Confidence 58999999999999999999996 4566666666654
No 355
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.84 E-value=4.4e-05 Score=80.94 Aligned_cols=120 Identities=20% Similarity=0.272 Sum_probs=65.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC------Cc-ccccccce-----e-----cCeeEEEE------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD------LF-SDARLFAT-----L-----DPRLKSVV------------------ 340 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~------v~-~~~~~f~T-----l-----d~t~~~i~------------------ 340 (596)
+..+++++|++|+||||++..|++.- +. .....+.. + ......+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999997631 11 00000000 0 00000110
Q ss_pred ECCc-eeEeeeccceeeccchhhHHHHHHhHHHH-----HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcE
Q 007599 341 LPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEV-----VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM 414 (596)
Q Consensus 341 l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~-----~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~Pi 414 (596)
...+ +++++||||.... ...+.+........+ ...+-.++|+|++.+ ......+....+.++ +.
T Consensus 193 ~~~~~D~ViIDTaGr~~~-~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~~-------~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN-KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAVG-------LT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcC-CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhCC-------CC
Confidence 0122 7899999998643 223333333322221 236778899999864 233333434444443 34
Q ss_pred EEEEecCCCCC
Q 007599 415 IEVWNKIDYHD 425 (596)
Q Consensus 415 IvVlNKiDlv~ 425 (596)
-+|+||+|...
T Consensus 263 giIlTKlD~t~ 273 (318)
T PRK10416 263 GIILTKLDGTA 273 (318)
T ss_pred EEEEECCCCCC
Confidence 68999999543
No 356
>PRK14974 cell division protein FtsY; Provisional
Probab=97.83 E-value=3.4e-05 Score=82.27 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=43.5
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++++||+|.... ...+....+.. ......|.+++|+|+..+ ......+......+++ --+++||+|..
T Consensus 224 DvVLIDTaGr~~~-~~~lm~eL~~i-~~~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~-------~giIlTKlD~~ 292 (336)
T PRK14974 224 DVVLIDTAGRMHT-DANLMDELKKI-VRVTKPDLVIFVGDALAG--NDAVEQAREFNEAVGI-------DGVILTKVDAD 292 (336)
T ss_pred CEEEEECCCccCC-cHHHHHHHHHH-HHhhCCceEEEeeccccc--hhHHHHHHHHHhcCCC-------CEEEEeeecCC
Confidence 6899999998642 23444444332 234568899999998764 2333333333334443 46789999975
Q ss_pred C
Q 007599 425 D 425 (596)
Q Consensus 425 ~ 425 (596)
.
T Consensus 293 ~ 293 (336)
T PRK14974 293 A 293 (336)
T ss_pred C
Confidence 4
No 357
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.82 E-value=2.3e-05 Score=81.83 Aligned_cols=56 Identities=34% Similarity=0.405 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccc--------cceecCeeEEEEECCceeEeeeccceee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARL--------FATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~--------f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
.+++++|++|+|||||+|+|++......... .+|... ..+.+++ ...++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~--~~~~~~~-~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHR--ELFPLPG-GGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceE--EEEEcCC-CCEEEECCCCCc
Confidence 3799999999999999999999653221111 122221 2333332 347899999965
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.80 E-value=5.2e-05 Score=72.74 Aligned_cols=56 Identities=27% Similarity=0.328 Sum_probs=37.7
Q ss_pred hhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 361 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 361 ~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
++...+......+..||++++|+|++.+..... .. ++..+. .+|.|+|+||+|+.+
T Consensus 5 ~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~---i~~~~~-----~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 5 HMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PL---LEKILG-----NKPRIIVLNKADLAD 60 (171)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hh---hHhHhc-----CCCEEEEEehhhcCC
Confidence 344556667778888999999999987643221 11 222221 248999999999854
No 359
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.79 E-value=7.6e-05 Score=79.12 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC----Cc-cccccc-ceec------CeeEEEEECCc-------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD----LF-SDARLF-ATLD------PRLKSVVLPSG------------------- 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~----v~-~~~~~f-~Tld------~t~~~i~l~~~------------------- 344 (596)
.+|+..|.|+-|||||||+|.|+... +. +.+..+ ..+| .....+.+.++
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 57999999999999999999998542 11 111111 1111 11112233221
Q ss_pred ---------eeEeeeccceeeccchhhHHHHH--HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc
Q 007599 345 ---------KVLLSDTVGFISDLPLQLVDAFH--ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN 413 (596)
Q Consensus 345 ---------~i~liDTpG~i~~lp~~lv~af~--~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P 413 (596)
+.+++.|.|... |..+...|. ..+......+.++.|+|+.+.. ...........++...+
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~--p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~--~~~~~~~~~~~Qi~~AD----- 153 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMAD--PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHAD--EQMNQFTIAQSQVGYAD----- 153 (318)
T ss_pred HHhccCCCCCEEEEECCCccC--HHHHHHHHhcChhhcccEEeccEEEEEEhhhhh--hhccccHHHHHHHHhCC-----
Confidence 345666667643 444444441 1222333467899999997531 11111112234444433
Q ss_pred EEEEEecCCCCCcc
Q 007599 414 MIEVWNKIDYHDEE 427 (596)
Q Consensus 414 iIvVlNKiDlv~~~ 427 (596)
++|+||+|++++.
T Consensus 154 -~IvlnK~Dl~~~~ 166 (318)
T PRK11537 154 -RILLTKTDVAGEA 166 (318)
T ss_pred -EEEEeccccCCHH
Confidence 7899999998754
No 360
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00011 Score=78.45 Aligned_cols=125 Identities=23% Similarity=0.243 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCccc-------ccccceecCeeEEEEECC-c---eeEeeeccceeeccch-----
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSD-------ARLFATLDPRLKSVVLPS-G---KVLLSDTVGFISDLPL----- 360 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~-------~~~f~Tld~t~~~i~l~~-~---~i~liDTpG~i~~lp~----- 360 (596)
..++-++|.+|.|||||+|.|.+..+... ..+..|.........+.. + .+.++|||||-..+..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 47999999999999999999998753321 112223333333444433 3 7789999999543211
Q ss_pred ----hhHHHHHHhHHH--------HH--hcCEEEEEEeCCC-CChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 361 ----QLVDAFHATLEE--------VV--EADLLVHVLDCTA-PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 361 ----~lv~af~~tl~e--------~~--~aDliL~VvDas~-~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+...|...+.+ .. ..+++||.+..+. +..+-+...+..+-..+ ++|-|+-|+|.+.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v--------NiIPVI~KaD~lT 172 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV--------NLIPVIAKADTLT 172 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc--------cccceeeccccCC
Confidence 111222222211 11 3567777776543 23333433333332222 5788999999998
Q ss_pred cccc
Q 007599 426 EEMG 429 (596)
Q Consensus 426 ~~~~ 429 (596)
..+.
T Consensus 173 ~~El 176 (366)
T KOG2655|consen 173 KDEL 176 (366)
T ss_pred HHHH
Confidence 8765
No 361
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0004 Score=75.10 Aligned_cols=126 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcc---cccccceecCe------------------eEEEE-----------ECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFS---DARLFATLDPR------------------LKSVV-----------LPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~---~~~~f~Tld~t------------------~~~i~-----------l~~~~ 345 (596)
.+++++|++|+||||++..|.+..... ....+.|.|.. ...+. +.+.+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 589999999999999999998642111 11122233321 11111 12237
Q ss_pred eEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccC-CcEEEEEecCCCC
Q 007599 346 VLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKL-KNMIEVWNKIDYH 424 (596)
Q Consensus 346 i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~-~PiIvVlNKiDlv 424 (596)
++++||+|....- ..+.+.+. .+.....+.-.++|++++... ....+.++..-...+.+.... ..-=++++|.|-.
T Consensus 218 lVLIDTaG~~~~d-~~l~e~La-~L~~~~~~~~~lLVLsAts~~-~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 218 MVLIDTIGMSQRD-RTVSDQIA-MLHGADTPVQRLLLLNATSHG-DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred EEEEcCCCCCccc-HHHHHHHH-HHhccCCCCeEEEEecCccCh-HHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 8999999986321 12222222 222223345568899887642 222222333322222211000 0234678999965
Q ss_pred Cc
Q 007599 425 DE 426 (596)
Q Consensus 425 ~~ 426 (596)
..
T Consensus 295 ~~ 296 (374)
T PRK14722 295 SN 296 (374)
T ss_pred CC
Confidence 53
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.76 E-value=9.9e-05 Score=76.59 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=35.7
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 364 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 364 ~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+.+.....+..+|++++|+|++.|..... ..+.+.+ . .+|+|+|+||+|+++
T Consensus 10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l---~-----~kp~IiVlNK~DL~~ 62 (276)
T TIGR03596 10 KARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR---G-----NKPRLIVLNKADLAD 62 (276)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH---C-----CCCEEEEEEccccCC
Confidence 445555666778999999999987643222 2222322 1 258999999999864
No 363
>PRK00098 GTPase RsgA; Reviewed
Probab=97.75 E-value=7e-05 Score=78.63 Aligned_cols=56 Identities=32% Similarity=0.338 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcc-cccc-------cceecCeeEEEEECCceeEeeeccceee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFS-DARL-------FATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~-------f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
.+++++|++|+|||||+|+|++..... .... .+|... ..+.+++ ...++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~--~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHV--ELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccE--EEEEcCC-CcEEEECCCcCc
Confidence 378999999999999999999865321 1111 122211 2223332 358899999974
No 364
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.74 E-value=9e-05 Score=78.63 Aligned_cols=123 Identities=24% Similarity=0.294 Sum_probs=70.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC------cccccccceec-------CeeEEEEECCc-------------------
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL------FSDARLFATLD-------PRLKSVVLPSG------------------- 344 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v------~~~~~~f~Tld-------~t~~~i~l~~~------------------- 344 (596)
+|+..|.|+-|||||||+|.|+.... .++...-..+| .....+.+.+|
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 47899999999999999999986431 11111111111 11112223222
Q ss_pred -----eeEeeeccceeeccchhhHHHHHH--hHHHHHhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEE
Q 007599 345 -----KVLLSDTVGFISDLPLQLVDAFHA--TLEEVVEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIE 416 (596)
Q Consensus 345 -----~i~liDTpG~i~~lp~~lv~af~~--tl~e~~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIv 416 (596)
+.++|.|-|.-. |.-...+|.. .+......|.++-|||+.+.. .... .....-+++...+ ++
T Consensus 81 ~~~~~D~ivIEtTGlA~--P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~--~~~~~~~~~~~~Qia~AD------~i 150 (323)
T COG0523 81 RRDRPDRLVIETTGLAD--PAPVIQTFLTDPELADGVRLDGVVTVVDAAHFL--EGLDAIAELAEDQLAFAD------VI 150 (323)
T ss_pred ccCCCCEEEEeCCCCCC--CHHHHHHhccccccccceeeceEEEEEeHHHhh--hhHHHHHHHHHHHHHhCc------EE
Confidence 345777777753 4333444432 233344568899999998742 2222 1222334444433 89
Q ss_pred EEecCCCCCcccc
Q 007599 417 VWNKIDYHDEEMG 429 (596)
Q Consensus 417 VlNKiDlv~~~~~ 429 (596)
|+||+|++++...
T Consensus 151 vlNK~Dlv~~~~l 163 (323)
T COG0523 151 VLNKTDLVDAEEL 163 (323)
T ss_pred EEecccCCCHHHH
Confidence 9999999997753
No 365
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.73 E-value=9.3e-05 Score=77.25 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=35.7
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 364 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 364 ~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+.+.....+..+|++++|+|+..|..... ..+.+.+ + .+|+|+|+||+|+.+
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~---~-----~kp~iiVlNK~DL~~ 65 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII---G-----NKPRLLILNKSDLAD 65 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh---C-----CCCEEEEEEchhcCC
Confidence 445556667778999999999987643222 2222222 1 258999999999864
No 366
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.71 E-value=6.3e-05 Score=79.47 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=43.9
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
-+.++|.+|+..++.... |..|- ...|.-.+++-+..+...-..+++ .+.-.+ ..|+.+|.+|+|..
T Consensus 220 viTFIDLAGHEkYLKTTv---FGMTG---H~PDf~MLMiGaNaGIiGmTKEHL-gLALaL------~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTV---FGMTG---HMPDFTMLMIGANAGIIGMTKEHL-GLALAL------HVPVFVVVTKIDMC 286 (641)
T ss_pred eEEEEeccchhhhhheee---ecccc---CCCCceEEEecccccceeccHHhh-hhhhhh------cCcEEEEEEeeccC
Confidence 467999999987644332 22221 126777788877665332222222 221122 34999999999999
Q ss_pred Ccccc
Q 007599 425 DEEMG 429 (596)
Q Consensus 425 ~~~~~ 429 (596)
+++-+
T Consensus 287 PANiL 291 (641)
T KOG0463|consen 287 PANIL 291 (641)
T ss_pred cHHHH
Confidence 88754
No 367
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.71 E-value=8.6e-05 Score=69.78 Aligned_cols=55 Identities=33% Similarity=0.381 Sum_probs=36.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccce
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
...++++|++|+|||||+|+|.+.... .....+.|... ..+. .+..+.++||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~--~~~~-~~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGE--QLVK-ITSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeee--EEEE-cCCCEEEEECcCC
Confidence 357899999999999999999986532 23333333221 1122 2337899999995
No 368
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.70 E-value=0.00099 Score=73.48 Aligned_cols=129 Identities=19% Similarity=0.342 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCCcc--------------------------------------------------
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFS-------------------------------------------------- 324 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~-------------------------------------------------- 324 (596)
...|.|++||.-.|||||.+..+....+++
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 357999999999999999999997653221
Q ss_pred ----cccccceecCeeEEEEECCc---eeEeeeccceeeccchhh----H-HHHHHhHHHHHhcCEEEEEEeCCCCChHH
Q 007599 325 ----DARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQL----V-DAFHATLEEVVEADLLVHVLDCTAPNLEE 392 (596)
Q Consensus 325 ----~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~l----v-~af~~tl~e~~~aDliL~VvDas~~~~~~ 392 (596)
+-..+.|..+.+-.+...+. +..++|.||.|.....++ . .-+..+-..+.+...|++++- ++....
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDA 463 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDA 463 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcch
Confidence 11123444444445555443 788999999986544332 1 225566777888888888762 222344
Q ss_pred HHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 393 HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 393 ~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
....+-++...+.- ..+..|+|++|+|+...+-
T Consensus 464 ERSnVTDLVsq~DP---~GrRTIfVLTKVDlAEknl 496 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDP---HGRRTIFVLTKVDLAEKNV 496 (980)
T ss_pred hhhhHHHHHHhcCC---CCCeeEEEEeecchhhhcc
Confidence 45555566655542 2357899999999977643
No 369
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.70 E-value=4e-05 Score=83.98 Aligned_cols=57 Identities=32% Similarity=0.404 Sum_probs=44.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCC-CcccccccceecCeeEEEEECCceeEeeeccceee
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~-v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
..+|++|||+|+||||+||+|.|.. +.++.-++.|.+.. ++.+ ...+.|.|.||.+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQ--Ti~l-s~~v~LCDCPGLVf 371 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQ--TIFL-SPSVCLCDCPGLVF 371 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeE--EEEc-CCCceecCCCCccc
Confidence 6899999999999999999999987 45666677666554 3333 33688999999873
No 370
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.69 E-value=9.5e-05 Score=70.77 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=44.8
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++++||||.... .......+.. +......|.+++|+|+..+ ..........++..++ .-+|+||+|..
T Consensus 84 d~viiDt~g~~~~-~~~~l~~l~~-l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~~-------~~viltk~D~~ 152 (173)
T cd03115 84 DVVIVDTAGRLQI-DENLMEELKK-IKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALGI-------TGVILTKLDGD 152 (173)
T ss_pred CEEEEECcccchh-hHHHHHHHHH-HHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCCC-------CEEEEECCcCC
Confidence 6889999998643 2233333332 2223458899999998654 3344455555555553 46778999976
Q ss_pred Ccc
Q 007599 425 DEE 427 (596)
Q Consensus 425 ~~~ 427 (596)
...
T Consensus 153 ~~~ 155 (173)
T cd03115 153 ARG 155 (173)
T ss_pred CCc
Confidence 543
No 371
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.68 E-value=2.4e-05 Score=75.75 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC-----CCC--cccccccceecC------eeEEEEEC----------------------
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD-----SDL--FSDARLFATLDP------RLKSVVLP---------------------- 342 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg-----~~v--~~~~~~f~Tld~------t~~~i~l~---------------------- 342 (596)
|++.+.|+-|||||||++.|+. ..+ ...+..-..+|. ......+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 6889999999999999999992 211 111111011100 01111221
Q ss_pred C--c-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEe
Q 007599 343 S--G-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 419 (596)
Q Consensus 343 ~--~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlN 419 (596)
. . +.+++-|.|... |..+.. ....+......+.++.|+|+... ......-.-+..++...+ ++|+|
T Consensus 81 ~~~~~d~IiIE~sG~a~--p~~l~~-~~~~~~~~~~~~~iI~vVDa~~~--~~~~~~~~~~~~Qi~~AD------vIvln 149 (178)
T PF02492_consen 81 YEERPDRIIIETSGLAD--PAPLIL-QDPPLKEDFRLDSIITVVDATNF--DELENIPELLREQIAFAD------VIVLN 149 (178)
T ss_dssp CHGC-SEEEEEEECSSG--GGGHHH-HSHHHHHHESESEEEEEEEGTTH--GGHTTHCHHHHHHHCT-S------EEEEE
T ss_pred cCCCcCEEEECCccccc--cchhhh-ccccccccccccceeEEeccccc--cccccchhhhhhcchhcC------EEEEe
Confidence 1 2 567788888543 333311 12334445567889999999652 111112223345555544 88999
Q ss_pred cCCCCCcc
Q 007599 420 KIDYHDEE 427 (596)
Q Consensus 420 KiDlv~~~ 427 (596)
|+|+++.+
T Consensus 150 K~D~~~~~ 157 (178)
T PF02492_consen 150 KIDLVSDE 157 (178)
T ss_dssp -GGGHHHH
T ss_pred ccccCChh
Confidence 99998876
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.66 E-value=0.00012 Score=68.94 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=27.9
Q ss_pred CEEEEEEeCCCCChHHHHHHHH-HHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVL-QVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~-~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++.|..... ..+. ..+... .+|+|+|+||+|+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~-~~i~~~~~~~~------~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 1 DVILEVLDARDPLGTRS-PDIERVLIKEK------GKKLILVLNKADLVPK 44 (155)
T ss_pred CEEEEEEeccCCccccC-HHHHHHHHhcC------CCCEEEEEechhcCCH
Confidence 78999999988743222 2222 222222 2599999999998654
No 373
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.66 E-value=0.00014 Score=70.84 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.1
Q ss_pred CEEEccCCCCCCHHHHHHHHHHHHh
Q 007599 538 PDVKISARTGVGLQELLEIIDERLK 562 (596)
Q Consensus 538 ~vv~vSA~tG~Gi~eLl~~I~~~~~ 562 (596)
+++++||.+|.|+++|++.|.+.+.
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3899999999999999999988764
No 374
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=8e-05 Score=80.59 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcc-cccccceecCe------------------eEEEE-----------EC---C
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPR------------------LKSVV-----------LP---S 343 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~f~Tld~t------------------~~~i~-----------l~---~ 343 (596)
..+|+|+|++|+||||++..|+..-... ....+.+.|+. ..... +. +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 4689999999999999999997421000 00001111110 00000 01 1
Q ss_pred ceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 344 GKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 344 ~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
.+++|+||+|..... ..........+. ....+.+++|+|++.. ......+.+.+..+++ -=++++|+|-
T Consensus 321 ~DvVLIDTaGRs~kd-~~lm~EL~~~lk-~~~PdevlLVLsATtk--~~d~~~i~~~F~~~~i-------dglI~TKLDE 389 (436)
T PRK11889 321 VDYILIDTAGKNYRA-SETVEEMIETMG-QVEPDYICLTLSASMK--SKDMIEIITNFKDIHI-------DGIVFTKFDE 389 (436)
T ss_pred CCEEEEeCccccCcC-HHHHHHHHHHHh-hcCCCeEEEEECCccC--hHHHHHHHHHhcCCCC-------CEEEEEcccC
Confidence 278999999985432 233344433333 2346778889987643 2222333333344443 3477999997
Q ss_pred CC
Q 007599 424 HD 425 (596)
Q Consensus 424 v~ 425 (596)
..
T Consensus 390 T~ 391 (436)
T PRK11889 390 TA 391 (436)
T ss_pred CC
Confidence 55
No 375
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00016 Score=79.16 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcc---cccccceecCe------------------eEE-----------EEECCc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFS---DARLFATLDPR------------------LKS-----------VVLPSG 344 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~---~~~~f~Tld~t------------------~~~-----------i~l~~~ 344 (596)
..+|+++|+||+||||++..|++..+.. ......+.+.. ... ..+.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 3689999999999999999887642100 00011111110 000 001122
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++++||+|...... .+...... +.......-.++|+|++.. ......+......+++ -=++++|.|-.
T Consensus 271 d~VLIDTaGrsqrd~-~~~~~l~~-l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~~-------~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRDQ-MLAEQIAM-LSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHGI-------HGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcchH-HHHHHHHH-HhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCCC-------CEEEEEeeeCC
Confidence 678999999865422 22222222 2222224456788888743 2333333333333333 34779999975
Q ss_pred Cc
Q 007599 425 DE 426 (596)
Q Consensus 425 ~~ 426 (596)
..
T Consensus 340 ~~ 341 (420)
T PRK14721 340 AS 341 (420)
T ss_pred CC
Confidence 53
No 376
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00011 Score=74.53 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-.|+|+|++|||||||+|.++|. ..|+.+.+.+.+.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL-----------~~p~~G~V~~~g~ 65 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGL-----------EKPTSGEVLLDGR 65 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCc
Confidence 47999999999999999999998 4566677776554
No 377
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.00055 Score=75.38 Aligned_cols=118 Identities=25% Similarity=0.255 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-c--ccccccceecCe------------------eEEE-----------EECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-F--SDARLFATLDPR------------------LKSV-----------VLPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~--~~~~~f~Tld~t------------------~~~i-----------~l~~~~ 345 (596)
.+++++|++|+||||++..|+.... . -....+.+.|+. .... .+.+.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 5899999999999999888765321 0 011122222221 0000 011126
Q ss_pred eEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 346 VLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 346 i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
++++||||....-+. ....+...+.......-+.+|++++.. ......+...+..+++ -=++++|+|-..
T Consensus 302 lVlIDt~G~~~~d~~-~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~~-------~~vI~TKlDet~ 371 (424)
T PRK05703 302 VILIDTAGRSQRDKR-LIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLPL-------DGLIFTKLDETS 371 (424)
T ss_pred EEEEeCCCCCCCCHH-HHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCCC-------CEEEEecccccc
Confidence 899999998643222 222232222211123456777887643 3333444444443332 247899999744
No 378
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.001 Score=74.57 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..+|+|+|++|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 379
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=8.1e-05 Score=73.90 Aligned_cols=36 Identities=42% Similarity=0.534 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|+||||||||+++|+|. +.|..+.+.+.+.
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGe-----------l~p~~G~v~~~g~ 63 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGE-----------LSPDSGEVTLNGV 63 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCc-----------cCCCCCeEeeCCc
Confidence 58999999999999999999997 4555556655543
No 380
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.53 E-value=0.00067 Score=64.01 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHC
Q 007599 300 VAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg 319 (596)
++++|.+|+|||||+..|..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999875
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.00015 Score=77.94 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=32.2
Q ss_pred HHhcCEEEEEEeCCCCChHH-HHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+.++|.+++|+|+.++.... ............+ .|+|+|+||+|+++.
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~------ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTG------LEIVLCLNKADLVSP 135 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEEEEEchhcCCh
Confidence 67799999999998764322 2233322232333 489999999999754
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.50 E-value=0.00025 Score=72.42 Aligned_cols=49 Identities=29% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 372 EVVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+.++|.+++|+|+.+|. .......+...+...+ .|+++|+||+||.+.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~------i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQN------IEPIIVLNKIDLLDD 82 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEEEEECcccCCC
Confidence 356799999999998775 3333333333333323 489999999999654
No 383
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.50 E-value=0.00022 Score=76.40 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+..|.|+-|||||||+|.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999999999853
No 384
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0014 Score=74.27 Aligned_cols=119 Identities=26% Similarity=0.301 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccce-------------------------------------------ec
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFAT-------------------------------------------LD 333 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~T-------------------------------------------ld 333 (596)
..+|++.|.+++||||++|+++...+.+++...+| ..
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 46899999999999999999986543322222111 11
Q ss_pred CeeEEEEECCc-------eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC
Q 007599 334 PRLKSVVLPSG-------KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV 406 (596)
Q Consensus 334 ~t~~~i~l~~~-------~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi 406 (596)
+..-.+.++++ ++.++|.||.-.. ..+-..+ -.....+|++++|+.+-...+.... +.+....-
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~--se~tswi---d~~cldaDVfVlV~NaEntlt~sek----~Ff~~vs~ 259 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--SELTSWI---DSFCLDADVFVLVVNAENTLTLSEK----QFFHKVSE 259 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCc--hhhhHHH---HHHhhcCCeEEEEecCccHhHHHHH----HHHHHhhc
Confidence 12234455543 5779999998432 1111111 1123459999999987543232222 33333222
Q ss_pred CcccCCcEEEEEecCCCCCcc
Q 007599 407 SEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 407 ~~~~~~PiIvVlNKiDlv~~~ 427 (596)
. ++.+.++-||.|....+
T Consensus 260 ~---KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 260 E---KPNIFILNNKWDASASE 277 (749)
T ss_pred c---CCcEEEEechhhhhccc
Confidence 1 23577788899987764
No 385
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.48 E-value=0.00058 Score=68.75 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcc-------cccccceec--CeeEEEEECCc---eeEeeeccceeeccch----h
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFS-------DARLFATLD--PRLKSVVLPSG---KVLLSDTVGFISDLPL----Q 361 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~-------~~~~f~Tld--~t~~~i~l~~~---~i~liDTpG~i~~lp~----~ 361 (596)
++|.+||.+|.|||||+|.|....+.- ......|+. .....+. .++ ++.++|||||-.++.. +
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvie-E~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIE-EKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeee-ecceEEEEEEecCCCcccccCccchhH
Confidence 799999999999999999998754321 111122222 2222232 233 7889999999654321 1
Q ss_pred -----hHHHHHHhHHH-H------H----hcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 362 -----LVDAFHATLEE-V------V----EADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 362 -----lv~af~~tl~e-~------~----~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
..+.....+.+ + . ..+++++.+-.+... ..-+.+.+..+-+-. .+|-|+-|+|-+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv--------NvvPVIakaDtl 197 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV--------NVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh--------eeeeeEeecccc
Confidence 11111111111 1 1 245667777655432 222333333322222 578899999987
Q ss_pred Ccccc
Q 007599 425 DEEMG 429 (596)
Q Consensus 425 ~~~~~ 429 (596)
.-++.
T Consensus 198 TleEr 202 (336)
T KOG1547|consen 198 TLEER 202 (336)
T ss_pred cHHHH
Confidence 76554
No 386
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00058 Score=74.66 Aligned_cols=118 Identities=21% Similarity=0.252 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcc--cccccceecC----------------eeEEEEE------------CCceeE
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFS--DARLFATLDP----------------RLKSVVL------------PSGKVL 347 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~--~~~~f~Tld~----------------t~~~i~l------------~~~~i~ 347 (596)
.+++++|++||||||++..|+...... ......+.|+ ....... .+.+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 579999999999999999987421000 0000011111 0000000 122789
Q ss_pred eeeccceeeccchhhHHHHHHhHHHHH--hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 348 LSDTVGFISDLPLQLVDAFHATLEEVV--EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 348 liDTpG~i~~lp~~lv~af~~tl~e~~--~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
++||||+...- ......+...+.... ...-.++|+|++.. ......+......+++ -=+|++|.|-..
T Consensus 304 LIDTaGr~~rd-~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~~~-------~glIlTKLDEt~ 373 (432)
T PRK12724 304 LIDTAGYSHRN-LEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESLNY-------RRILLTKLDEAD 373 (432)
T ss_pred EEeCCCCCccC-HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCCCC-------CEEEEEcccCCC
Confidence 99999986321 123333433333221 13357789998764 2333333343444443 357899999654
No 387
>PRK01889 GTPase RsgA; Reviewed
Probab=97.39 E-value=0.00014 Score=78.32 Aligned_cols=24 Identities=50% Similarity=0.671 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
.+++++|.+|+|||||+|+|+|..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999999864
No 388
>PRK00098 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.00029 Score=74.01 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=31.7
Q ss_pred HHhcCEEEEEEeCCCCChHH-HHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 373 VVEADLLVHVLDCTAPNLEE-HRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~-~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+.++|.+++|+|+.+|.... ....+...+...+ .|+++|+||+|+.+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~------ip~iIVlNK~DL~~ 125 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANG------IKPIIVLNKIDLLD 125 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEEEEEhHHcCC
Confidence 46799999999998764322 2233333334333 48999999999963
No 389
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.00087 Score=72.44 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
+..+++++|++|+||||++..|+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999974
No 390
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.00065 Score=79.20 Aligned_cols=120 Identities=20% Similarity=0.185 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCccc---ccccceecCee--------------E-EEE--------------ECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSD---ARLFATLDPRL--------------K-SVV--------------LPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~---~~~f~Tld~t~--------------~-~i~--------------l~~~~ 345 (596)
.+|++||+||+||||++..|++...... .....|.|+.- + .+. +.+.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 5899999999999999999987431110 11122222210 0 000 11226
Q ss_pred eEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCC
Q 007599 346 VLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 346 i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv 424 (596)
++||||+|...... .+.+.... +......+-+++|+|++.. .+....+.+..... +.. +-=+|++|.|-.
T Consensus 266 ~VLIDTAGRs~~d~-~l~eel~~-l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~-----i~glIlTKLDEt 336 (767)
T PRK14723 266 LVLIDTVGMSQRDR-NVSEQIAM-LCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGED-----VDGCIITKLDEA 336 (767)
T ss_pred EEEEeCCCCCccCH-HHHHHHHH-HhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCC-----CCEEEEeccCCC
Confidence 89999999754321 23333222 2223345678889998743 22333222322222 111 234679999975
Q ss_pred Cc
Q 007599 425 DE 426 (596)
Q Consensus 425 ~~ 426 (596)
..
T Consensus 337 ~~ 338 (767)
T PRK14723 337 TH 338 (767)
T ss_pred CC
Confidence 43
No 391
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.32 E-value=0.00046 Score=74.58 Aligned_cols=118 Identities=20% Similarity=0.193 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCee-E----------------EEE------------ECCc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRL-K----------------SVV------------LPSG 344 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t~-~----------------~i~------------l~~~ 344 (596)
..+|+||||||+||||.+-.|...-. ......+.|+|..- + .+. +.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 46999999999999999998876432 11122334454420 0 111 1122
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++|+||.|.-..-+. .+.......... ...-+.+|++++.. ...+.++++.++... .-=++++|+|-.
T Consensus 283 d~ILVDTaGrs~~D~~-~i~el~~~~~~~-~~i~~~Lvlsat~K-----~~dlkei~~~f~~~~----i~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKE-KIEELKELIDVS-HSIEVYLVLSATTK-----YEDLKEIIKQFSLFP----IDGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHH-HHHHHHHHHhcc-ccceEEEEEecCcc-----hHHHHHHHHHhccCC----cceeEEEccccc
Confidence 6889999998543222 223333333322 23445667776542 233445555555432 234679999964
Q ss_pred C
Q 007599 425 D 425 (596)
Q Consensus 425 ~ 425 (596)
.
T Consensus 352 ~ 352 (407)
T COG1419 352 T 352 (407)
T ss_pred C
Confidence 4
No 392
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.32 E-value=0.0034 Score=58.70 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|+|||||++.|+|. ..+..+.+.+.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~~~ 62 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE-----------LEPDEGIVTWGST 62 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCe
Confidence 48999999999999999999997 3455666766543
No 393
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00052 Score=82.98 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccc--cceecCeeEEEEEC-CceeEeeeccceeeccc-h-hh-HHH---H
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARL--FATLDPRLKSVVLP-SGKVLLSDTVGFISDLP-L-QL-VDA---F 366 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~--f~Tld~t~~~i~l~-~~~i~liDTpG~i~~lp-~-~l-v~a---f 366 (596)
+.|...|||++|+||||++.. +|.+....... ..+..+.++.+.+. ....++|||.|-..... . .. ..+ |
T Consensus 124 eLPWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred cCCceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHH
Confidence 689999999999999999764 33332221111 11111212333322 23788999999754322 1 01 111 1
Q ss_pred HH---hHHHHHhcCEEEEEEeCCCC---ChHHH---HHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 367 HA---TLEEVVEADLLVHVLDCTAP---NLEEH---RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 367 ~~---tl~e~~~aDliL~VvDas~~---~~~~~---~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
-. ..+.....+.|++.+|+++- ...+. ...+..=|.++.-......|+.+++||+|++..-.
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~ 273 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFE 273 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHH
Confidence 11 11223346888888887552 11111 11122224444333333459999999999998643
No 394
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00036 Score=76.24 Aligned_cols=113 Identities=20% Similarity=0.263 Sum_probs=71.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-c---------------ccccccceecCeeEEEEEC-------------C--c
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-F---------------SDARLFATLDPRLKSVVLP-------------S--G 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~---------------~~~~~f~Tld~t~~~i~l~-------------~--~ 344 (596)
+++++.++.|..+|||||-..|..... . -+...+.|+..+.-.+.+. + +
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 678899999999999999999964321 1 2233445554443333321 1 1
Q ss_pred -eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 345 -KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 345 -~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
-+.++|.||++.+. ... ..+++..|..+.|||+.++..-+....+.+.+.+- + .-++|+||+|+
T Consensus 98 FLiNLIDSPGHVDFS-----SEV---TAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER-I------kPvlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFS-----SEV---TAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-I------KPVLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccch-----hhh---hheeEeccCcEEEEEccCceEechHHHHHHHHHhh-c------cceEEeehhhH
Confidence 46799999998641 112 22345589999999998875544444444444432 2 23678999996
No 395
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.27 E-value=0.00049 Score=75.95 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=41.4
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++++||||.... ...+.+.... +..+..+|.+++|+|++.+ .+....+...-..++ ..-+|+||+|-.
T Consensus 177 DvVIIDTAGr~~~-d~~lm~El~~-l~~~~~pdevlLVvda~~g--q~av~~a~~F~~~l~-------i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHAL-EEDLIEEMKE-IKEAVKPDEVLLVIDATIG--QQAKNQAKAFHEAVG-------IGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccc-hHHHHHHHHH-HHHHhcccceeEEEecccc--HHHHHHHHHHHhcCC-------CCEEEEecccCC
Confidence 6899999998643 2334333332 3445568999999998764 222222222111222 235789999964
Q ss_pred C
Q 007599 425 D 425 (596)
Q Consensus 425 ~ 425 (596)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
No 396
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.26 E-value=0.0013 Score=62.82 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|+|||||++.|+|. ..+..+.+.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~ 62 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL-----------YKPDSGEILVDGK 62 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCE
Confidence 58999999999999999999997 2345566666543
No 397
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.00067 Score=73.81 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=62.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCc-----ccccccceecCe------------------eEEEE-----------EC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLF-----SDARLFATLDPR------------------LKSVV-----------LP 342 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~-----~~~~~f~Tld~t------------------~~~i~-----------l~ 342 (596)
..+|+++|++|+||||.+..|+..-.. -......|.|+. ..... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 468999999999999999888742100 001111122210 00000 11
Q ss_pred CceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 343 SGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 343 ~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
+.+++++||+|........ .......+.......-+++|+|++.. ..... +++..+.... +-=++++|.|
T Consensus 254 ~~DlVLIDTaGr~~~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~---~~~~~~~~~~----~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMK-LAEMKELLNACGRDAEFHLAVSSTTK--TSDVK---EIFHQFSPFS----YKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCccCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH---HHHHHhcCCC----CCEEEEEecc
Confidence 2278999999986432212 22233333322212257789998764 22322 3444443211 2357899999
Q ss_pred CCCc
Q 007599 423 YHDE 426 (596)
Q Consensus 423 lv~~ 426 (596)
-...
T Consensus 324 et~~ 327 (388)
T PRK12723 324 ETTC 327 (388)
T ss_pred CCCc
Confidence 6543
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.24 E-value=0.00059 Score=71.30 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+.++|.+++|+|+..+. .....+.....+...+ .|+++|+||+|+.+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~------ip~iIVlNK~DL~~~ 124 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAG------IEPVIVLTKADLLDD 124 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcC------CCEEEEEEHHHCCCh
Confidence 45689999999998774 2233333333334333 489999999999764
No 399
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.23 E-value=0.00052 Score=71.55 Aligned_cols=61 Identities=30% Similarity=0.283 Sum_probs=45.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC------CcccccccceecCeeEEEEECCc-eeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD------LFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~------v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~ 357 (596)
..+.|-++|.||+|||||+|++.... ..+...++.|.+... .+.+... .+.++||||.+..
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCCceEEecCCCcCCC
Confidence 45899999999999999999996532 345667777766544 3444444 8999999999753
No 400
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.21 E-value=0.00034 Score=72.43 Aligned_cols=127 Identities=22% Similarity=0.295 Sum_probs=68.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCC----Cccccccc--------------------------------ceecCe-eE
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSD----LFSDARLF--------------------------------ATLDPR-LK 337 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~----v~~~~~~f--------------------------------~Tld~t-~~ 337 (596)
.++|.-.+.||-|||||||+|.++... +.+--..| .|.... ++
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvr 134 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVR 134 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHH
Confidence 478999999999999999999997532 11100001 111000 00
Q ss_pred ----EEEECCc-eeEeeeccceeeccchhhHHHHH--HhHHHHHhcCEEEEEEeCCCCCh----HHHHHHHHHHHHHcCC
Q 007599 338 ----SVVLPSG-KVLLSDTVGFISDLPLQLVDAFH--ATLEEVVEADLLVHVLDCTAPNL----EEHRTTVLQVLQQVGV 406 (596)
Q Consensus 338 ----~i~l~~~-~i~liDTpG~i~~lp~~lv~af~--~tl~e~~~aDliL~VvDas~~~~----~~~~~~v~~iL~~lgi 406 (596)
-+.-++. +.+++.|.|+....| +...|- ..+..-...|.++-|+|+-+... ....-.+.+...++..
T Consensus 135 aie~lvqkkGkfD~IllETTGlAnPaP--ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~ 212 (391)
T KOG2743|consen 135 AIENLVQKKGKFDHILLETTGLANPAP--IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIAL 212 (391)
T ss_pred HHHHHHhcCCCcceEEEeccCCCCcHH--HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhh
Confidence 0011122 557888988864322 222231 12222344789999999866310 0111223333344444
Q ss_pred CcccCCcEEEEEecCCCCCcccc
Q 007599 407 SEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 407 ~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.+ -+++||.|++..+..
T Consensus 213 AD------~II~NKtDli~~e~~ 229 (391)
T KOG2743|consen 213 AD------RIIMNKTDLVSEEEV 229 (391)
T ss_pred hh------eeeeccccccCHHHH
Confidence 32 356999999998765
No 401
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00011 Score=74.35 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCcee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKV 346 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i 346 (596)
-+++|+||||||||||||.|+|. +.|+.+.+.+.+.++
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~-----------~~P~~G~v~~~G~~i 68 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGF-----------YKPSSGTVIFRGRDI 68 (250)
T ss_pred eEEEEECCCCCCceeeeeeeccc-----------ccCCCceEEECCccc
Confidence 58999999999999999999997 567778888766533
No 402
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.18 E-value=0.00081 Score=74.08 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=41.7
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++++||||.... ...+...... +......|-+++|+|+..+ ......+......+++ .=+|+||+|-.
T Consensus 184 DvVIIDTaGr~~~-d~~l~~eL~~-i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-------~giIlTKlD~~ 252 (428)
T TIGR00959 184 DVVIVDTAGRLQI-DEELMEELAA-IKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-------TGVVLTKLDGD 252 (428)
T ss_pred CEEEEeCCCcccc-CHHHHHHHHH-HHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-------CEEEEeCccCc
Confidence 6899999997542 2233333332 3335568889999998753 3333334333344554 34679999953
No 403
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00058 Score=69.44 Aligned_cols=93 Identities=27% Similarity=0.377 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCcee-------EeeeccceeeccchhhHHHHHHhH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKV-------LLSDTVGFISDLPLQLVDAFHATL 370 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i-------~liDTpG~i~~lp~~lv~af~~tl 370 (596)
-.++++|+||||||||++.|.|. +.|+.+.+.+.+..+ .+.-.+|++.+.|.+.. |..|.
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GL-----------l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~--~~~tV 97 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGL-----------LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQL--FGPTV 97 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCc-----------CcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccc--ccCcH
Confidence 58999999999999999999997 455556665544322 23455788776665422 33333
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCc
Q 007599 371 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSE 408 (596)
Q Consensus 371 ~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~ 408 (596)
.+ |++.-.....- ..++....+.+.|..+++..
T Consensus 98 ~~----evafg~~n~g~-~~~e~~~rv~~~l~~vgl~~ 130 (235)
T COG1122 98 ED----EVAFGLENLGL-PREEIEERVAEALELVGLEE 130 (235)
T ss_pred HH----HHhhchhhcCC-CHHHHHHHHHHHHHHcCchh
Confidence 32 11111111111 23345677888899888754
No 404
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.12 E-value=0.0025 Score=66.15 Aligned_cols=118 Identities=20% Similarity=0.217 Sum_probs=63.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecC------------------eeEEEE-----------EC--Cc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDP------------------RLKSVV-----------LP--SG 344 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~------------------t~~~i~-----------l~--~~ 344 (596)
..+++++|++|+|||||+..|++.-.. .....+.+.++ ...... +. .+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 479999999999999999988753100 00000011110 000000 01 12
Q ss_pred -eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 345 -KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 345 -~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
+++++||||..... ......+...+. ....+.+++|+|++.. ..+...+.+....++ +-=++++|.|-
T Consensus 155 ~D~ViIDt~Gr~~~~-~~~l~el~~~~~-~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~~-------~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKNYRA-SETVEEMIETMG-QVEPDYICLTLSASMK--SKDMIEIITNFKDIH-------IDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCCcCC-HHHHHHHHHHHh-hhCCCeEEEEEcCccC--HHHHHHHHHHhCCCC-------CCEEEEEeecC
Confidence 78999999986432 233344433332 3456778899998643 222222223233333 34578999997
Q ss_pred CC
Q 007599 424 HD 425 (596)
Q Consensus 424 v~ 425 (596)
..
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 55
No 405
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00053 Score=68.88 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCcee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKV 346 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i 346 (596)
-+++++|+||||||||+++|+|. +.+..+.+.+.+.++
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl-----------~~~~~G~I~~~G~di 67 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGL-----------VRPRSGRIIFDGEDI 67 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCeec
Confidence 58999999999999999999997 455566777765433
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.00099 Score=74.28 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++++|+|||||||++..|++.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 58999999999999999999863
No 407
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00065 Score=68.31 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~ 62 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL-----------LRPDSGEVLIDGE 62 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCE
Confidence 48999999999999999999997 3445566666543
No 408
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.05 E-value=0.00068 Score=67.24 Aligned_cols=36 Identities=33% Similarity=0.384 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. +.+..+.+.+.+.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~ 66 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL-----------DRPTSGEVRVDGT 66 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC-----------cCCCceeEEECCE
Confidence 58999999999999999999997 3455566666543
No 409
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.05 E-value=0.00069 Score=67.17 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~ 65 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI-----------EKPTRGKIRFNGQ 65 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCE
Confidence 58999999999999999999997 3455666666543
No 410
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.0014 Score=69.17 Aligned_cols=114 Identities=23% Similarity=0.342 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC------CCc--------------------------ccccccceecCeeEEEEEC-
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS------DLF--------------------------SDARLFATLDPRLKSVVLP- 342 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~------~v~--------------------------~~~~~f~Tld~t~~~i~l~- 342 (596)
++.+|.+||-||+||||-+-.|+.. .+. +... ..-||.. +.+.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~--~G~DpAa--VafDA 213 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK--EGADPAA--VAFDA 213 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC--CCCCcHH--HHHHH
Confidence 4678999999999999999888642 110 1100 1122221 1111
Q ss_pred ------Cc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCE-----EEEEEeCCCCChHHHHHHHHHHHHHcCCCccc
Q 007599 343 ------SG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL-----LVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEK 410 (596)
Q Consensus 343 ------~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl-----iL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~ 410 (596)
.+ +++++||+|-... ..+|......-.+.+...+. +++|+|+.-+. .....+...=+..++.
T Consensus 214 i~~Akar~~DvvliDTAGRLhn-k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq--nal~QAk~F~eav~l~--- 287 (340)
T COG0552 214 IQAAKARGIDVVLIDTAGRLHN-KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ--NALSQAKIFNEAVGLD--- 287 (340)
T ss_pred HHHHHHcCCCEEEEeCcccccC-chhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh--hHHHHHHHHHHhcCCc---
Confidence 12 6899999998643 34565555444443333333 77888998762 3333333333344543
Q ss_pred CCcEEEEEecCCC
Q 007599 411 LKNMIEVWNKIDY 423 (596)
Q Consensus 411 ~~PiIvVlNKiDl 423 (596)
=++++|+|-
T Consensus 288 ----GiIlTKlDg 296 (340)
T COG0552 288 ----GIILTKLDG 296 (340)
T ss_pred ----eEEEEeccc
Confidence 467999994
No 411
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.03 E-value=0.0007 Score=66.82 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999997
No 412
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.03 E-value=0.00076 Score=65.58 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~ 54 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL-----------LRPQSGAVLIDGE 54 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEECCE
Confidence 47999999999999999999997 2345566666543
No 413
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.02 E-value=0.00063 Score=62.11 Aligned_cols=36 Identities=39% Similarity=0.545 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|+|||||+++|+|. ..+..+.+.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~-----------~~~~~G~i~~~~~ 47 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL-----------LPPDSGSILINGK 47 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS-----------SHESEEEEEETTE
T ss_pred CEEEEEccCCCccccceeeeccc-----------ccccccccccccc
Confidence 48999999999999999999997 3456667766543
No 414
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.02 E-value=0.00077 Score=66.36 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 62 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL-----------IKESSGSILLNGK 62 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCE
Confidence 48999999999999999999997 3455666666554
No 415
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.00 E-value=0.00073 Score=65.74 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 61 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ-----------LIPNGDNDEWDGI 61 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC-----------CCCCCcEEEECCE
Confidence 58999999999999999999997 3455666766543
No 416
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00083 Score=66.87 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999996
No 417
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.00 E-value=0.00074 Score=73.88 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGl 52 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGT 52 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 58999999999999999999996
No 418
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.99 E-value=0.0081 Score=64.45 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHhcCEEEEEEeCCCCC-------hHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPN-------LEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~-------~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
...++.+++|+|.++.+ ...........++.+ +-......|+++++||.|+...
T Consensus 205 f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~ 266 (342)
T smart00275 205 FDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEE 266 (342)
T ss_pred hCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHH
Confidence 44689999999998631 011122222333332 1122234699999999998654
No 419
>PRK12288 GTPase RsgA; Reviewed
Probab=96.99 E-value=0.002 Score=69.23 Aligned_cols=48 Identities=23% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+.++|.+++|.+..........+.+.......+ .|.++|+||+|+.+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~------i~~VIVlNK~DL~~~ 165 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLG------IEPLIVLNKIDLLDD 165 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcC------CCEEEEEECccCCCc
Confidence 356899888888754333333333333333333 488999999999764
No 420
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00086 Score=66.36 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~ 62 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL-----------ERPDSGEILIDGR 62 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCE
Confidence 47999999999999999999996 2345556655443
No 421
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0009 Score=66.07 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g 61 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDG 61 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECC
Confidence 47999999999999999999997 235556666654
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=96.98 E-value=0.0018 Score=71.49 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=40.0
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++++||||.... ...+...... +......+-+++|+|+..+ ......+....+.+++ .-+|+||+|-.
T Consensus 185 DvVIIDTaGrl~~-d~~lm~eL~~-i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i-------~giIlTKlD~~ 253 (433)
T PRK10867 185 DVVIVDTAGRLHI-DEELMDELKA-IKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGL-------TGVILTKLDGD 253 (433)
T ss_pred CEEEEeCCCCccc-CHHHHHHHHH-HHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCC-------CEEEEeCccCc
Confidence 6899999997542 2233333322 2334457788999998643 2333333333333433 35778999953
No 423
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.97 E-value=0.0044 Score=67.40 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCEEEccCCCCCCHHHHHHHHHHHHhhcccccCCCCcccccccccccC
Q 007599 537 APDVKISARTGVGLQELLEIIDERLKTLDDKQKSPNVVERDFFNKKWR 584 (596)
Q Consensus 537 ~~vv~vSA~tG~Gi~eLl~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (596)
+||+|++.. ...-+|....+.+.|-|. |+-|-++|=-+|-
T Consensus 210 vpVlpvnc~-~l~~~DI~~Il~~vLyEF-------PV~Ei~~~lP~Wv 249 (492)
T PF09547_consen 210 VPVLPVNCE-QLREEDITRILEEVLYEF-------PVSEININLPKWV 249 (492)
T ss_pred CcEEEeehH-HcCHHHHHHHHHHHHhcC-------CceEEEeecchHH
Confidence 569999887 588999999999999996 8999998888884
No 424
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.97 E-value=0.00084 Score=67.70 Aligned_cols=35 Identities=37% Similarity=0.535 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-.|+|+|++|||||||||.|.+.+ .|+.+.+.+.+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld-----------~pt~G~v~i~g 66 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD-----------KPTSGEVLING 66 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc-----------CCCCceEEECC
Confidence 479999999999999999999973 45666666655
No 425
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.97 E-value=0.00093 Score=65.62 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~ 60 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL-----------EKFDSGQVYLNGK 60 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCE
Confidence 47999999999999999999997 3455566666544
No 426
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00091 Score=69.88 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSD 350 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liD 350 (596)
-+++|+||+|||||||+..+.+.+ .|+.+.+.+.+.++.-.+
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN~Le-----------~PtsG~v~v~G~di~~l~ 74 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLINLLE-----------RPTSGSVFVDGQDLTALS 74 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHhccC-----------CCCCceEEEcCEecccCC
Confidence 489999999999999999999873 577788888765544333
No 427
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.96 E-value=0.00082 Score=65.48 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+|||+|++|||||||+|.+.|-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 58999999999999999999996
No 428
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.00085 Score=66.30 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
+++|+|++|||||||++.|+|. +.+..+.+.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~ 61 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL-----------TPPSSGTIRIDGQ 61 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCC
Confidence 8999999999999999999997 2345556665543
No 429
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.94 E-value=0.00094 Score=66.03 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 430
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00096 Score=66.93 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 431
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.94 E-value=0.00093 Score=70.08 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++++|++||||||||+.|+|. +.|+.+.+.+.+
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G 66 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLG 66 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcC
Confidence 58999999999999999999997 456677777765
No 432
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.93 E-value=0.001 Score=65.64 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~ 63 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE-----------ELPTSGTIRVNGQ 63 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCE
Confidence 48999999999999999999997 2345566666543
No 433
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.93 E-value=0.00098 Score=66.21 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 434
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.93 E-value=0.00073 Score=72.40 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=43.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
....|+|+|++|+||||++|+|....+ .+...++.|... +.+.+ +..+.|+|.||++-
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~sm--qeV~L-dk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSM--QEVKL-DKKIRLLDSPGIVP 309 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhh--hheec-cCCceeccCCceee
Confidence 568999999999999999999998765 344455544333 33443 44799999999974
No 435
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.0011 Score=66.11 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999997
No 436
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.92 E-value=0.00098 Score=66.77 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 437
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.92 E-value=0.00098 Score=65.78 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 438
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.92 E-value=0.001 Score=66.19 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 439
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.0028 Score=66.29 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-.+|+.|++|||||||+..|.|. ..|+.+.+.+++.
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGL-----------e~p~~G~I~~~~~ 64 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGL-----------ETPDAGRIRLNGR 64 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCc-----------CCCCCceEEECCE
Confidence 58999999999999999999998 3566677777654
No 440
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0011 Score=63.87 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 441
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.91 E-value=0.0013 Score=60.95 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=39.6
Q ss_pred HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 367 HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 367 ~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+...+.+..+|++++|+|++.|... ....+.+++.... ..+|+++|+||+|+.+.+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~-~~~~l~~~l~~~~----~~k~~iivlNK~DL~~~~ 58 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLF-RPPDLERYVKEVD----PRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCccc-CCHHHHHHHHhcc----CCCcEEEEEechhcCCHH
Confidence 3456667789999999999887432 2335556666541 125999999999997644
No 442
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.91 E-value=0.0011 Score=65.82 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999997
No 443
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.91 E-value=0.001 Score=66.18 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 444
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.91 E-value=0.001 Score=67.07 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~ 64 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRL-----------VEPSSGSILLEGT 64 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------cCCCccEEEECCE
Confidence 48999999999999999999997 2345566666543
No 445
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.90 E-value=0.001 Score=66.34 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 446
>PRK10908 cell division protein FtsE; Provisional
Probab=96.90 E-value=0.0012 Score=65.73 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~ 64 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGI-----------ERPSAGKIWFSGH 64 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCE
Confidence 58999999999999999999997 2455666666544
No 447
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0012 Score=66.49 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~ 71 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL-----------DTPTSGDVIFNGQ 71 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCE
Confidence 48999999999999999999997 3455666666553
No 448
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.00099 Score=70.98 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-.++++||+||||||||+.|+|..
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999974
No 449
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.88 E-value=0.0012 Score=64.70 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999997
No 450
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.88 E-value=0.0012 Score=64.72 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 451
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.88 E-value=4.3e-05 Score=73.96 Aligned_cols=122 Identities=20% Similarity=0.087 Sum_probs=76.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+.|+|+-|+|||+++.+-........-......+.....+.+++. ++.|||.+|+.++ ...+.-..
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerf--------g~mtrVyy 96 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERF--------GNMTRVYY 96 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhh--------cceEEEEe
Confidence 357899999999999999988765322111111122333334455554 6789999998643 12233334
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+....+|+|++.....+......+ .-..+.+......|+|+..||||.-..
T Consensus 97 kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 97 KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 56888899999988654443333222 222344555666789999999997543
No 452
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0012 Score=66.67 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 453
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.87 E-value=0.0011 Score=69.46 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 454
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.86 E-value=0.0012 Score=65.95 Aligned_cols=36 Identities=33% Similarity=0.403 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~ 72 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGL-----------DDGSSGEVSLVGQ 72 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeeEEECCE
Confidence 58999999999999999999997 3455566665443
No 455
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.86 E-value=0.0011 Score=66.54 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 47999999999999999999996
No 456
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.86 E-value=0.0011 Score=65.64 Aligned_cols=35 Identities=37% Similarity=0.451 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g 60 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL-----------LKPTSGSIRVFG 60 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECC
Confidence 48999999999999999999997 234555666554
No 457
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0021 Score=62.66 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC--c--eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS--G--KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~--~--~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...++++|..|.||||++++.+.....-.- .+|+......+.+.. + ++..|||+|...... ...- .
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y--~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg-------lrdg-y 79 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTY--PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG-------LRDG-Y 79 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecc--cCcceeEEeeeeeecccCcEEEEeeecccceeecc-------cccc-c
Confidence 578999999999999999988765432111 122222222222221 2 678899999865421 0111 1
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHH-HHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVL-QVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~-~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
...+.++++++|+.....-.....+. +.+..++ +.|+++..||+|.....
T Consensus 80 yI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 80 YIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKARK 130 (216)
T ss_pred EEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceeccccc
Confidence 22355777888886532222222222 2233222 14999999999976654
No 458
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0012 Score=66.44 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 459
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.85 E-value=0.0013 Score=64.75 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~ 62 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL-----------IKPDSGEITFDGK 62 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCC
Confidence 58999999999999999999997 2345566666543
No 460
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.85 E-value=0.0013 Score=64.92 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999997
No 461
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0012 Score=67.64 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 462
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.82 E-value=0.0013 Score=65.66 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999997
No 463
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.82 E-value=0.0014 Score=65.93 Aligned_cols=23 Identities=48% Similarity=0.533 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 464
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.81 E-value=0.0014 Score=63.47 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999997
No 465
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.81 E-value=0.0014 Score=64.64 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++|+|++|||||||++.|+|.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 466
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.81 E-value=0.0015 Score=64.21 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|+|||||++.|+|. ..+..+.+.+.+.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~ 63 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL-----------LNPEKGEILFERQ 63 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeeEEECCC
Confidence 58999999999999999999997 2345556665443
No 467
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0062 Score=57.32 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|+|||||++.|.|.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 468
>PRK01889 GTPase RsgA; Reviewed
Probab=96.78 E-value=0.0039 Score=67.19 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=34.9
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+.+.|.+++|+++..+......+.+..++...++ |.++|+||+|+.+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i------~piIVLNK~DL~~~ 157 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGA------EPVIVLTKADLCED 157 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCC------CEEEEEEChhcCCC
Confidence 3568999999998643333355666666777776 56889999999764
No 469
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0015 Score=64.78 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999997
No 470
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.0013 Score=66.66 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-.|+|+|+||||||||++.|+|. +.|+.+.+...+.
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v~G~ 89 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKVTGK 89 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCc-----------cCCCCceEEEcce
Confidence 57999999999999999999997 6788888877655
No 471
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0015 Score=67.47 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999996
No 472
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.78 E-value=0.0015 Score=65.76 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 473
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0016 Score=65.79 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 474
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0015 Score=66.01 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|+|||||++.|+|.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999997
No 475
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.77 E-value=0.0015 Score=65.49 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 476
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.77 E-value=0.0016 Score=64.41 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 477
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0015 Score=65.87 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 478
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0017 Score=62.28 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-.++|+|++|+|||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 479
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.76 E-value=0.0014 Score=65.36 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-.|.|+|.+|||||||+|+|+|. +.++.+.+.+.+.
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~Idg~ 68 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILIDGV 68 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCc-----------cccCCceEEECce
Confidence 36899999999999999999997 5666677766554
No 480
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0016 Score=64.29 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 481
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0016 Score=67.27 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 69 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGF-----------VRLASGKISILGQ 69 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCE
Confidence 58999999999999999999997 2345556655543
No 482
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0016 Score=67.10 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999997
No 483
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0016 Score=67.91 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. +.|+.+.+.+.+.
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 69 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNAL-----------LKPSSGTITIAGY 69 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCE
Confidence 47999999999999999999997 3455666666554
No 484
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.75 E-value=0.0016 Score=68.31 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999996
No 485
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.74 E-value=0.0017 Score=64.48 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|+|||||++.|+|.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47999999999999999999997
No 486
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.74 E-value=0.0094 Score=66.77 Aligned_cols=119 Identities=19% Similarity=0.140 Sum_probs=70.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
+....+-++|+.|+|||.|++++.|....-++............+...+. .+++.|..-... + +-...+
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~----~----~l~~ke- 493 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQ----D----FLTSKE- 493 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcccc----c----cccCcc-
Confidence 36789999999999999999999997644322222222333444555443 334444221111 1 111111
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
..+|++.++.|.+.+........+.+ .+... ...|++.|..|+|+-...+
T Consensus 494 -~~cDv~~~~YDsS~p~sf~~~a~v~~----~~~~~-~~~Pc~~va~K~dlDe~~Q 543 (625)
T KOG1707|consen 494 -AACDVACLVYDSSNPRSFEYLAEVYN----KYFDL-YKIPCLMVATKADLDEVPQ 543 (625)
T ss_pred -ceeeeEEEecccCCchHHHHHHHHHH----Hhhhc-cCCceEEEeeccccchhhh
Confidence 45999999999997754443333222 22222 3359999999999866543
No 487
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0016 Score=65.32 Aligned_cols=23 Identities=48% Similarity=0.605 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999997
No 488
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.74 E-value=0.0018 Score=65.74 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999997
No 489
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.73 E-value=0.0017 Score=63.84 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|+|||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 490
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0017 Score=65.72 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 65 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRL-----------IDPTEGSILIDGV 65 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCE
Confidence 47999999999999999999996 2345566666543
No 491
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.72 E-value=0.0018 Score=65.25 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999997
No 492
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0018 Score=67.14 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|+.+.+.+.+.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 66 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGI-----------LKPTSGSVLIRGE 66 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCE
Confidence 48999999999999999999997 3455566665543
No 493
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.72 E-value=0.0018 Score=69.44 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999997
No 494
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0018 Score=66.72 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..+..+.+.+.+.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~ 71 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGI-----------EKVKSGEIFYNNQ 71 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCE
Confidence 48999999999999999999997 2345566666543
No 495
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0018 Score=67.08 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~ 69 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGL-----------HVPTQGSVRVDDT 69 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCE
Confidence 47999999999999999999997 2455566666543
No 496
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.71 E-value=0.0016 Score=66.96 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+.
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 75 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGELLIDDH 75 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCE
Confidence 48999999999999999999997 3445555655443
No 497
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0017 Score=67.63 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..++.+.+.+.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~ 69 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINAL-----------LKPTTGTVTVDDI 69 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCE
Confidence 48999999999999999999997 3455666666554
No 498
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.71 E-value=0.002 Score=64.33 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|+|||||++.|+|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999996
No 499
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.70 E-value=0.0019 Score=64.85 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999997
No 500
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.70 E-value=0.0019 Score=68.10 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999997
Done!