Query 007599
Match_columns 596
No_of_seqs 643 out of 4427
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qtf_A Protein HFLX, GTP-bindi 100.0 1.2E-58 4.2E-63 493.2 26.2 295 78-426 10-307 (364)
2 3gee_A MNME, tRNA modification 99.9 5.3E-23 1.8E-27 226.0 17.3 220 172-426 135-358 (476)
3 1xzp_A Probable tRNA modificat 99.9 2.8E-22 9.6E-27 220.5 13.6 213 172-425 147-364 (482)
4 3geh_A MNME, tRNA modification 99.8 6.9E-21 2.4E-25 208.4 10.9 219 171-428 126-347 (462)
5 2e87_A Hypothetical protein PH 99.8 2.8E-19 9.5E-24 189.1 19.8 169 248-426 119-295 (357)
6 4a9a_A Ribosome-interacting GT 99.8 7.4E-20 2.5E-24 195.1 14.6 163 257-425 34-196 (376)
7 2rdo_7 EF-G, elongation factor 99.8 7.9E-20 2.7E-24 209.6 14.9 246 296-563 9-288 (704)
8 1dar_A EF-G, elongation factor 99.8 4.8E-20 1.6E-24 211.1 10.2 246 296-563 11-282 (691)
9 2xex_A Elongation factor G; GT 99.8 6.8E-20 2.3E-24 209.8 10.8 246 296-563 9-280 (693)
10 3iev_A GTP-binding protein ERA 99.8 2.4E-18 8.1E-23 178.6 19.2 124 296-425 9-136 (308)
11 3tr5_A RF-3, peptide chain rel 99.8 5.1E-20 1.7E-24 204.7 7.1 235 297-563 13-277 (528)
12 2gj8_A MNME, tRNA modification 99.8 1.7E-18 5.7E-23 163.3 15.6 124 297-424 4-128 (172)
13 1lnz_A SPO0B-associated GTP-bi 99.8 5E-19 1.7E-23 186.7 12.2 126 297-426 158-289 (342)
14 2wji_A Ferrous iron transport 99.8 3.3E-18 1.1E-22 159.6 15.4 120 297-425 3-122 (165)
15 3iby_A Ferrous iron transport 99.8 5.6E-19 1.9E-23 178.9 10.2 120 298-426 2-125 (256)
16 2dyk_A GTP-binding protein; GT 99.8 2E-17 6.8E-22 151.5 17.5 120 298-426 2-123 (161)
17 3i8s_A Ferrous iron transport 99.8 9E-19 3.1E-23 178.8 8.7 121 297-426 3-127 (274)
18 3vqt_A RF-3, peptide chain rel 99.7 1.4E-18 4.9E-23 193.9 10.4 233 298-563 32-295 (548)
19 3a1s_A Iron(II) transport prot 99.7 7.2E-18 2.5E-22 170.8 14.4 120 297-425 5-124 (258)
20 4dhe_A Probable GTP-binding pr 99.7 3.9E-18 1.3E-22 165.9 11.8 126 296-428 28-161 (223)
21 2lkc_A Translation initiation 99.7 6.6E-18 2.3E-22 157.6 12.8 117 295-426 6-122 (178)
22 3tkl_A RAS-related protein RAB 99.7 1.7E-17 5.9E-22 157.4 15.7 121 296-427 15-137 (196)
23 1mky_A Probable GTP-binding pr 99.7 9.5E-18 3.2E-22 182.2 15.7 120 298-424 2-123 (439)
24 1wf3_A GTP-binding protein; GT 99.7 7.8E-18 2.7E-22 174.4 14.1 124 297-426 7-132 (301)
25 2h5e_A Peptide chain release f 99.7 4.3E-18 1.5E-22 189.3 12.8 235 297-563 13-278 (529)
26 3tw8_B RAS-related protein RAB 99.7 6.3E-18 2.1E-22 157.6 11.6 119 296-426 8-128 (181)
27 4fn5_A EF-G 1, elongation fact 99.7 2.8E-18 9.6E-23 197.0 10.1 246 296-563 12-291 (709)
28 1z0j_A RAB-22, RAS-related pro 99.7 2.7E-17 9.1E-22 151.8 14.8 119 297-426 6-126 (170)
29 2oil_A CATX-8, RAS-related pro 99.7 2.2E-17 7.5E-22 157.0 14.0 120 296-426 24-145 (193)
30 2efe_B Small GTP-binding prote 99.7 4.1E-17 1.4E-21 152.6 15.4 119 297-426 12-132 (181)
31 1ky3_A GTP-binding protein YPT 99.7 2.6E-17 9E-22 153.5 14.0 123 296-426 7-133 (182)
32 3k53_A Ferrous iron transport 99.7 1.1E-17 3.9E-22 169.7 12.1 122 297-426 3-124 (271)
33 1z0f_A RAB14, member RAS oncog 99.7 5.2E-17 1.8E-21 151.1 15.6 119 296-425 14-134 (179)
34 3b1v_A Ferrous iron uptake tra 99.7 1E-17 3.6E-22 171.1 11.8 119 297-425 3-121 (272)
35 3q85_A GTP-binding protein REM 99.7 3.9E-17 1.3E-21 151.0 14.4 120 297-426 2-124 (169)
36 2hjg_A GTP-binding protein ENG 99.7 3.2E-17 1.1E-21 177.8 16.1 125 296-427 174-302 (436)
37 2il1_A RAB12; G-protein, GDP, 99.7 2.8E-17 9.5E-22 157.1 13.7 118 297-425 26-145 (192)
38 2y8e_A RAB-protein 6, GH09086P 99.7 1.2E-17 4.2E-22 155.4 10.9 118 298-426 15-134 (179)
39 2nzj_A GTP-binding protein REM 99.7 4.2E-17 1.4E-21 151.4 14.5 122 296-426 3-126 (175)
40 2fu5_C RAS-related protein RAB 99.7 4.9E-18 1.7E-22 159.7 8.2 119 297-426 8-128 (183)
41 1g16_A RAS-related protein SEC 99.7 1.9E-17 6.6E-22 152.7 12.0 116 297-423 3-120 (170)
42 2dy1_A Elongation factor G; tr 99.7 5.8E-18 2E-22 193.1 10.3 242 296-563 8-274 (665)
43 1r2q_A RAS-related protein RAB 99.7 3.8E-17 1.3E-21 150.5 13.9 118 297-425 6-125 (170)
44 2bme_A RAB4A, RAS-related prot 99.7 2.4E-17 8.3E-22 155.1 12.9 119 296-425 9-129 (186)
45 1ek0_A Protein (GTP-binding pr 99.7 1.7E-17 5.7E-22 152.9 11.4 118 298-426 4-123 (170)
46 3clv_A RAB5 protein, putative; 99.7 6.7E-17 2.3E-21 152.9 15.7 114 296-422 6-158 (208)
47 4dsu_A GTPase KRAS, isoform 2B 99.7 3.9E-17 1.3E-21 153.5 13.7 118 297-425 4-123 (189)
48 2wjg_A FEOB, ferrous iron tran 99.7 3.1E-17 1.1E-21 154.8 13.0 121 296-425 6-126 (188)
49 1u8z_A RAS-related protein RAL 99.7 8.8E-17 3E-21 147.4 15.6 118 297-426 4-124 (168)
50 3j25_A Tetracycline resistance 99.7 1.1E-18 3.9E-23 198.0 3.5 219 297-563 2-239 (638)
51 1z08_A RAS-related protein RAB 99.7 1.6E-17 5.4E-22 153.6 10.5 119 297-426 6-126 (170)
52 3pqc_A Probable GTP-binding pr 99.7 1.7E-16 5.8E-21 149.9 17.8 124 295-428 21-150 (195)
53 2g6b_A RAS-related protein RAB 99.7 5.5E-17 1.9E-21 151.6 14.2 120 296-426 9-131 (180)
54 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.1E-16 3.6E-21 149.2 16.1 121 296-424 6-129 (177)
55 3cph_A RAS-related protein SEC 99.7 4.8E-17 1.7E-21 156.6 14.2 117 296-423 19-137 (213)
56 1upt_A ARL1, ADP-ribosylation 99.7 1.2E-16 4E-21 147.9 16.2 117 296-426 6-123 (171)
57 2bcg_Y Protein YP2, GTP-bindin 99.7 4.6E-17 1.6E-21 156.6 13.8 120 296-426 7-128 (206)
58 2fn4_A P23, RAS-related protei 99.7 3.7E-17 1.3E-21 152.4 12.7 119 296-426 8-129 (181)
59 1x3s_A RAS-related protein RAB 99.7 9.9E-17 3.4E-21 151.8 15.7 117 297-424 15-134 (195)
60 4dcu_A GTP-binding protein ENG 99.7 6.8E-17 2.3E-21 176.3 16.4 125 296-427 194-322 (456)
61 1svi_A GTP-binding protein YSX 99.7 1.2E-16 4.2E-21 151.6 16.1 122 296-427 22-150 (195)
62 1z2a_A RAS-related protein RAB 99.7 3.2E-17 1.1E-21 151.0 11.5 118 297-426 5-124 (168)
63 2h57_A ADP-ribosylation factor 99.7 6.7E-17 2.3E-21 153.5 13.9 120 296-425 20-140 (190)
64 3bc1_A RAS-related protein RAB 99.7 9.1E-17 3.1E-21 151.2 14.6 120 296-425 10-141 (195)
65 2hxs_A RAB-26, RAS-related pro 99.7 2E-17 7E-22 154.3 10.0 121 296-425 5-129 (178)
66 1zj6_A ADP-ribosylation factor 99.7 1.9E-16 6.5E-21 150.0 16.8 116 296-425 15-131 (187)
67 2hjg_A GTP-binding protein ENG 99.7 2.8E-17 9.6E-22 178.3 12.5 121 297-425 3-125 (436)
68 1zbd_A Rabphilin-3A; G protein 99.7 1.3E-16 4.4E-21 152.9 15.8 119 297-426 8-128 (203)
69 1vg8_A RAS-related protein RAB 99.7 5.8E-17 2E-21 155.4 13.1 121 296-424 7-130 (207)
70 2qu8_A Putative nucleolar GTP- 99.7 1.1E-16 3.7E-21 157.5 15.3 132 295-428 27-159 (228)
71 1kao_A RAP2A; GTP-binding prot 99.7 1.1E-16 3.8E-21 146.6 14.1 116 298-425 4-122 (167)
72 3dz8_A RAS-related protein RAB 99.7 5.3E-17 1.8E-21 154.6 12.3 120 296-426 22-143 (191)
73 3q72_A GTP-binding protein RAD 99.7 1.4E-16 4.6E-21 147.0 14.6 116 298-426 3-121 (166)
74 1ksh_A ARF-like protein 2; sma 99.7 1.6E-16 5.3E-21 150.0 15.3 117 296-426 17-134 (186)
75 1c1y_A RAS-related protein RAP 99.7 1.4E-16 4.7E-21 146.5 14.6 117 298-426 4-123 (167)
76 2bov_A RAla, RAS-related prote 99.7 1.6E-16 5.6E-21 151.9 15.6 120 296-426 13-134 (206)
77 2f7s_A C25KG, RAS-related prot 99.7 1.5E-16 5.1E-21 154.3 15.5 119 296-425 24-155 (217)
78 2p5s_A RAS and EF-hand domain 99.7 1.2E-16 4.2E-21 153.3 14.7 119 296-425 27-147 (199)
79 2a9k_A RAS-related protein RAL 99.7 2.2E-16 7.5E-21 147.9 15.9 118 297-426 18-138 (187)
80 2fg5_A RAB-22B, RAS-related pr 99.7 1.2E-16 4.1E-21 152.4 14.2 118 297-425 23-142 (192)
81 2a5j_A RAS-related protein RAB 99.7 7.4E-17 2.5E-21 153.6 12.7 118 297-425 21-140 (191)
82 2iwr_A Centaurin gamma 1; ANK 99.7 8E-17 2.7E-21 150.7 12.7 115 296-425 6-122 (178)
83 1moz_A ARL1, ADP-ribosylation 99.7 5.5E-17 1.9E-21 152.2 11.6 117 296-426 17-134 (183)
84 1mky_A Probable GTP-binding pr 99.7 1.2E-16 4.1E-21 173.5 15.9 124 296-426 179-307 (439)
85 4bas_A ADP-ribosylation factor 99.7 1.3E-16 4.4E-21 151.7 14.1 122 296-426 16-142 (199)
86 2ew1_A RAS-related protein RAB 99.7 9.4E-17 3.2E-21 155.7 13.3 118 297-425 26-145 (201)
87 1r8s_A ADP-ribosylation factor 99.7 2.5E-16 8.5E-21 144.9 15.5 114 299-426 2-116 (164)
88 2gf9_A RAS-related protein RAB 99.7 8.1E-17 2.8E-21 152.8 12.1 119 296-425 21-141 (189)
89 1fzq_A ADP-ribosylation factor 99.7 4.3E-16 1.5E-20 147.6 17.1 117 296-426 15-132 (181)
90 1zd9_A ADP-ribosylation factor 99.7 2.6E-16 9E-21 149.6 15.6 118 296-426 21-139 (188)
91 2erx_A GTP-binding protein DI- 99.7 1.5E-16 5.2E-21 146.7 13.4 119 297-426 3-124 (172)
92 2ce2_X GTPase HRAS; signaling 99.7 3.5E-16 1.2E-20 142.9 15.6 117 298-425 4-122 (166)
93 2o52_A RAS-related protein RAB 99.7 5.8E-17 2E-21 156.1 10.7 119 296-425 24-144 (200)
94 2hup_A RAS-related protein RAB 99.7 2.4E-16 8.4E-21 152.0 15.0 118 297-425 29-148 (201)
95 1wb1_A Translation elongation 99.7 8.7E-17 3E-21 176.9 13.1 116 296-426 18-140 (482)
96 3j2k_7 ERF3, eukaryotic polype 99.7 8.7E-17 3E-21 174.9 12.5 118 296-426 16-170 (439)
97 3kkq_A RAS-related protein M-R 99.7 4E-16 1.4E-20 146.6 15.2 119 296-426 17-138 (183)
98 1s0u_A EIF-2-gamma, translatio 99.7 2E-16 6.8E-21 170.2 14.9 120 295-427 6-151 (408)
99 2b6h_A ADP-ribosylation factor 99.7 4.1E-16 1.4E-20 149.3 15.4 117 296-426 28-145 (192)
100 3con_A GTPase NRAS; structural 99.7 4.4E-16 1.5E-20 147.4 14.7 118 297-425 21-140 (190)
101 3sjy_A Translation initiation 99.7 1.9E-16 6.6E-21 170.1 13.7 120 296-428 7-146 (403)
102 1kk1_A EIF2gamma; initiation o 99.7 2.1E-16 7.2E-21 170.0 13.9 119 296-427 9-153 (410)
103 1z06_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 148.6 13.7 121 296-426 19-142 (189)
104 4djt_A GTP-binding nuclear pro 99.7 1.2E-16 4E-21 155.1 10.6 120 296-426 10-132 (218)
105 2gf0_A GTP-binding protein DI- 99.7 4.6E-16 1.6E-20 147.9 14.5 119 296-425 7-128 (199)
106 4dcu_A GTP-binding protein ENG 99.7 1.2E-16 4.1E-21 174.3 11.7 122 296-425 22-145 (456)
107 3cbq_A GTP-binding protein REM 99.7 5.2E-16 1.8E-20 149.3 14.7 121 296-426 22-145 (195)
108 2h17_A ADP-ribosylation factor 99.7 3.6E-16 1.2E-20 147.5 13.3 116 296-425 20-136 (181)
109 2x77_A ADP-ribosylation factor 99.7 2.9E-16 9.9E-21 148.8 12.6 117 296-426 21-138 (189)
110 3cpj_B GTP-binding protein YPT 99.7 1.7E-16 5.9E-21 155.3 11.2 119 296-425 12-132 (223)
111 1mh1_A RAC1; GTP-binding, GTPa 99.7 2E-16 6.7E-21 148.3 11.1 118 297-427 5-125 (186)
112 3t5g_A GTP-binding protein RHE 99.7 1.8E-16 6.2E-21 148.7 10.7 119 296-426 5-126 (181)
113 1f6b_A SAR1; gtpases, N-termin 99.7 4.7E-16 1.6E-20 149.8 13.6 115 297-425 25-140 (198)
114 2www_A Methylmalonic aciduria 99.7 2E-16 6.9E-21 167.1 11.6 144 254-425 25-226 (349)
115 3l0i_B RAS-related protein RAB 99.7 1E-17 3.5E-22 160.8 1.5 121 296-427 32-154 (199)
116 3ihw_A Centg3; RAS, centaurin, 99.7 6.6E-16 2.3E-20 147.0 13.8 112 296-425 19-133 (184)
117 3izy_P Translation initiation 99.7 1.6E-17 5.4E-22 184.6 2.9 116 296-426 3-119 (537)
118 1ega_A Protein (GTP-binding pr 99.7 2E-16 6.9E-21 163.6 10.8 120 297-425 8-130 (301)
119 3oes_A GTPase rhebl1; small GT 99.7 1.3E-16 4.3E-21 153.4 8.3 119 296-426 23-144 (201)
120 3p26_A Elongation factor 1 alp 99.6 2.2E-16 7.5E-21 173.6 10.8 118 296-426 32-186 (483)
121 1m2o_B GTP-binding protein SAR 99.6 9.4E-16 3.2E-20 146.6 13.7 114 298-425 24-138 (190)
122 3qq5_A Small GTP-binding prote 99.6 1.3E-16 4.6E-21 172.6 8.7 121 296-426 33-155 (423)
123 3reg_A RHO-like small GTPase; 99.6 3.8E-16 1.3E-20 148.8 10.8 117 297-426 23-142 (194)
124 1g7s_A Translation initiation 99.6 9.3E-17 3.2E-21 180.7 7.4 117 296-427 4-138 (594)
125 2xtp_A GTPase IMAP family memb 99.6 5.3E-16 1.8E-20 155.7 12.1 126 296-425 21-153 (260)
126 2gco_A H9, RHO-related GTP-bin 99.6 9.9E-16 3.4E-20 147.3 13.3 118 297-427 25-145 (201)
127 2fv8_A H6, RHO-related GTP-bin 99.6 6.9E-16 2.3E-20 149.1 11.8 117 298-427 26-145 (207)
128 2atv_A RERG, RAS-like estrogen 99.6 1.7E-15 6E-20 144.6 14.2 118 297-426 28-147 (196)
129 4gzl_A RAS-related C3 botulinu 99.6 1.8E-16 6.3E-21 153.2 7.3 119 297-428 30-151 (204)
130 2atx_A Small GTP binding prote 99.6 1.4E-15 4.8E-20 144.6 13.3 118 297-427 18-138 (194)
131 3t1o_A Gliding protein MGLA; G 99.6 1.1E-15 3.7E-20 144.5 12.4 122 296-426 13-150 (198)
132 2q3h_A RAS homolog gene family 99.6 9E-16 3.1E-20 146.8 12.0 118 296-426 19-139 (201)
133 2yc2_C IFT27, small RAB-relate 99.6 2.5E-16 8.7E-21 150.5 8.0 121 297-425 20-146 (208)
134 2fh5_B SR-beta, signal recogni 99.6 2.5E-15 8.7E-20 145.3 15.0 119 297-428 7-132 (214)
135 3lvq_E ARF-GAP with SH3 domain 99.6 1.1E-15 3.7E-20 168.0 13.4 117 296-426 321-438 (497)
136 3lxw_A GTPase IMAP family memb 99.6 1E-15 3.5E-20 153.7 12.1 127 296-425 20-153 (247)
137 1zo1_I IF2, translation initia 99.6 8.6E-17 2.9E-21 177.4 4.2 116 296-426 3-118 (501)
138 2j1l_A RHO-related GTP-binding 99.6 2.3E-15 7.9E-20 146.5 13.8 118 297-427 34-154 (214)
139 3o47_A ADP-ribosylation factor 99.6 2.2E-15 7.5E-20 157.7 14.0 117 296-426 164-281 (329)
140 2elf_A Protein translation elo 99.6 1.7E-15 5.7E-20 161.4 12.8 102 298-423 22-125 (370)
141 3c5c_A RAS-like protein 12; GD 99.6 1.8E-15 6E-20 144.1 11.7 117 296-425 20-141 (187)
142 3bwd_D RAC-like GTP-binding pr 99.6 5.7E-16 2E-20 144.9 8.1 119 296-427 7-128 (182)
143 2c78_A Elongation factor TU-A; 99.6 1E-15 3.5E-20 164.4 10.8 115 296-425 10-142 (405)
144 3izq_1 HBS1P, elongation facto 99.6 4.1E-16 1.4E-20 176.2 7.8 118 296-426 166-320 (611)
145 4dkx_A RAS-related protein RAB 99.6 2.2E-15 7.4E-20 148.8 12.0 118 298-426 14-133 (216)
146 2j0v_A RAC-like GTP-binding pr 99.6 1.5E-15 5.2E-20 146.6 10.5 118 296-426 8-128 (212)
147 3t5d_A Septin-7; GTP-binding p 99.6 9.4E-16 3.2E-20 155.9 9.0 125 297-428 8-161 (274)
148 2cxx_A Probable GTP-binding pr 99.6 4.9E-15 1.7E-19 139.5 12.9 117 298-426 2-137 (190)
149 1jwy_B Dynamin A GTPase domain 99.6 4.1E-15 1.4E-19 153.0 12.7 126 296-427 23-214 (315)
150 1udx_A The GTP-binding protein 99.6 3.2E-15 1.1E-19 161.5 12.0 125 297-426 157-284 (416)
151 3llu_A RAS-related GTP-binding 99.6 1E-14 3.4E-19 139.7 13.9 122 296-427 19-145 (196)
152 3q3j_B RHO-related GTP-binding 99.6 4E-15 1.4E-19 145.1 10.8 117 297-426 27-146 (214)
153 1d2e_A Elongation factor TU (E 99.6 2.7E-15 9.3E-20 160.9 10.4 114 297-425 3-133 (397)
154 2aka_B Dynamin-1; fusion prote 99.6 1.6E-14 5.3E-19 147.2 15.5 125 296-426 25-207 (299)
155 3gj0_A GTP-binding nuclear pro 99.6 2.2E-15 7.7E-20 146.8 8.5 116 296-425 14-133 (221)
156 2cjw_A GTP-binding protein GEM 99.6 2.7E-14 9.2E-19 136.9 15.5 121 296-425 5-128 (192)
157 2g3y_A GTP-binding protein GEM 99.6 1.1E-14 3.6E-19 143.2 12.6 120 296-425 36-159 (211)
158 3th5_A RAS-related C3 botulinu 99.3 1.9E-16 6.6E-21 152.2 0.0 119 297-427 30-150 (204)
159 2wkq_A NPH1-1, RAS-related C3 99.6 1.9E-14 6.6E-19 147.9 14.6 117 297-426 155-274 (332)
160 1zun_B Sulfate adenylate trans 99.6 7.6E-15 2.6E-19 159.2 12.0 117 296-426 23-172 (434)
161 3mca_A HBS1, elongation factor 99.6 2.9E-16 9.9E-21 176.8 -0.1 118 295-425 175-329 (592)
162 1m7b_A RND3/RHOE small GTP-bin 99.6 2.5E-15 8.6E-20 142.1 6.0 118 296-426 6-126 (184)
163 2ywe_A GTP-binding protein LEP 99.5 1.4E-14 4.9E-19 162.9 13.0 116 296-426 5-140 (600)
164 1jny_A EF-1-alpha, elongation 99.5 7.9E-15 2.7E-19 159.2 9.9 118 296-426 5-159 (435)
165 2f9l_A RAB11B, member RAS onco 99.5 4.8E-14 1.6E-18 135.3 14.3 118 297-425 5-124 (199)
166 2j69_A Bacterial dynamin-like 99.5 8.4E-14 2.9E-18 159.5 18.4 120 296-426 68-245 (695)
167 3cb4_D GTP-binding protein LEP 99.5 1.9E-14 6.6E-19 161.9 12.4 116 296-426 3-138 (599)
168 1f60_A Elongation factor EEF1A 99.5 5.9E-15 2E-19 161.3 7.7 117 296-425 6-159 (458)
169 1gwn_A RHO-related GTP-binding 99.5 5.2E-15 1.8E-19 143.7 6.0 117 297-426 28-147 (205)
170 3zvr_A Dynamin-1; hydrolase, D 99.5 2.7E-14 9.2E-19 163.9 12.8 126 296-427 50-233 (772)
171 3r7w_A Gtpase1, GTP-binding pr 99.5 3.8E-14 1.3E-18 146.8 12.6 125 298-426 4-130 (307)
172 3lxx_A GTPase IMAP family memb 99.5 3.7E-14 1.3E-18 140.6 11.9 131 296-429 28-163 (239)
173 1r5b_A Eukaryotic peptide chai 99.5 8.4E-15 2.9E-19 160.5 7.8 116 296-425 42-195 (467)
174 2zej_A Dardarin, leucine-rich 99.5 2.2E-14 7.5E-19 135.9 8.4 117 298-426 3-127 (184)
175 1pui_A ENGB, probable GTP-bind 99.5 1.1E-13 3.8E-18 133.1 12.9 122 296-427 25-153 (210)
176 3avx_A Elongation factor TS, e 99.5 4.7E-14 1.6E-18 166.6 11.8 115 296-425 295-426 (1289)
177 3dpu_A RAB family protein; roc 99.5 5E-14 1.7E-18 156.5 11.3 114 296-426 40-165 (535)
178 1oix_A RAS-related protein RAB 99.5 1.6E-13 5.6E-18 131.2 13.4 118 297-425 29-148 (191)
179 3def_A T7I23.11 protein; chlor 99.5 5.4E-13 1.8E-17 134.7 16.0 128 296-427 35-167 (262)
180 2x2e_A Dynamin-1; nitration, h 99.5 6.2E-14 2.1E-18 147.9 9.3 125 296-426 30-212 (353)
181 1nrj_B SR-beta, signal recogni 99.5 3.7E-13 1.3E-17 130.4 12.8 125 296-428 11-137 (218)
182 3t34_A Dynamin-related protein 99.4 7E-13 2.4E-17 140.0 15.4 128 296-428 33-220 (360)
183 2p67_A LAO/AO transport system 99.4 1.6E-13 5.6E-18 144.2 9.0 147 254-426 17-209 (341)
184 3p32_A Probable GTPase RV1496/ 99.4 2.6E-13 9E-18 143.3 10.2 28 537-564 258-285 (355)
185 2ged_A SR-beta, signal recogni 99.4 6.1E-13 2.1E-17 126.0 10.4 126 296-429 47-174 (193)
186 1h65_A Chloroplast outer envel 99.4 2.9E-12 1E-16 129.7 16.1 130 296-428 38-171 (270)
187 2wsm_A Hydrogenase expression/ 99.4 6.8E-13 2.3E-17 129.0 8.0 28 537-564 188-215 (221)
188 1wxq_A GTP-binding protein; st 99.3 1.6E-12 5.4E-17 139.7 8.9 89 299-388 2-114 (397)
189 2qpt_A EH domain-containing pr 99.3 2.6E-12 9E-17 143.4 10.6 128 296-429 64-236 (550)
190 2qm8_A GTPase/ATPase; G protei 99.3 6E-12 2E-16 132.3 12.5 27 538-564 236-262 (337)
191 3c5h_A Glucocorticoid receptor 99.3 1.5E-12 5.2E-17 130.9 6.8 26 537-562 229-254 (255)
192 2qag_A Septin-2, protein NEDD5 99.3 4.5E-12 1.5E-16 134.4 9.6 125 297-428 37-191 (361)
193 1jal_A YCHF protein; nucleotid 99.2 2.4E-11 8E-16 128.9 12.0 87 298-387 3-108 (363)
194 1yrb_A ATP(GTP)binding protein 99.2 1.2E-11 4E-16 123.5 7.7 28 537-564 231-258 (262)
195 2hf9_A Probable hydrogenase ni 99.2 4.5E-11 1.5E-15 116.4 8.5 28 537-564 198-225 (226)
196 1n0u_A EF-2, elongation factor 99.1 5.4E-11 1.9E-15 139.0 8.2 115 296-425 18-164 (842)
197 2dby_A GTP-binding protein; GD 99.1 9E-11 3.1E-15 124.8 9.0 87 298-387 2-111 (368)
198 3r7w_B Gtpase2, GTP-binding pr 99.0 1.2E-09 4E-14 114.4 11.5 120 299-427 1-122 (331)
199 2ohf_A Protein OLA1, GTP-bindi 99.0 3.3E-10 1.1E-14 121.3 6.6 89 297-387 22-128 (396)
200 2j37_W Signal recognition part 98.9 5.7E-10 2E-14 123.1 6.9 119 296-426 100-255 (504)
201 2qnr_A Septin-2, protein NEDD5 98.9 1.2E-09 4.2E-14 112.8 7.9 123 297-426 18-170 (301)
202 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2E-09 6.8E-14 115.3 8.4 88 297-387 20-127 (392)
203 2qag_B Septin-6, protein NEDD5 98.8 1.4E-08 4.9E-13 109.6 10.3 124 297-429 42-194 (427)
204 2qag_C Septin-7; cell cycle, c 98.7 5.1E-08 1.7E-12 105.3 11.7 125 297-429 31-185 (418)
205 3ec1_A YQEH GTPase; atnos1, at 98.7 1.5E-09 5.1E-14 115.3 -1.2 119 298-429 163-292 (369)
206 3sop_A Neuronal-specific septi 98.6 9.1E-08 3.1E-12 97.3 9.7 124 298-429 3-158 (270)
207 1tq4_A IIGP1, interferon-induc 98.6 1.5E-07 5.1E-12 101.4 11.6 116 297-424 69-188 (413)
208 3h2y_A GTPase family protein; 98.6 3.9E-09 1.3E-13 112.2 -1.0 122 298-429 161-291 (368)
209 1puj_A YLQF, conserved hypothe 98.4 3.1E-07 1E-11 94.0 8.6 58 296-356 119-177 (282)
210 1f5n_A Interferon-induced guan 98.4 4.7E-07 1.6E-11 101.6 9.1 60 296-356 37-103 (592)
211 2v3c_C SRP54, signal recogniti 98.3 7E-07 2.4E-11 96.8 7.4 118 297-425 99-252 (432)
212 3szr_A Interferon-induced GTP- 98.3 2E-06 6.9E-11 97.0 11.0 126 296-428 44-231 (608)
213 3kl4_A SRP54, signal recogniti 98.3 3.3E-07 1.1E-11 99.3 4.1 205 296-532 96-346 (433)
214 1puj_A YLQF, conserved hypothe 98.2 1.4E-06 4.6E-11 89.2 7.2 56 362-426 10-65 (282)
215 3dm5_A SRP54, signal recogniti 98.1 7.6E-06 2.6E-10 88.8 9.9 120 296-426 99-254 (443)
216 3ohm_A Guanine nucleotide-bind 98.1 8E-06 2.8E-10 85.3 9.6 79 339-426 162-249 (327)
217 3cnl_A YLQF, putative uncharac 98.0 3.6E-06 1.2E-10 85.1 5.0 57 298-357 100-157 (262)
218 4fid_A G protein alpha subunit 97.8 4.3E-05 1.5E-09 80.2 8.1 79 339-426 156-243 (340)
219 2yv5_A YJEQ protein; hydrolase 97.8 3E-05 1E-09 79.9 6.8 68 351-427 58-126 (302)
220 1cip_A Protein (guanine nucleo 97.7 1.4E-05 4.9E-10 84.2 4.2 83 335-425 184-274 (353)
221 1u0l_A Probable GTPase ENGC; p 97.7 3.3E-05 1.1E-09 79.3 6.9 66 345-426 64-130 (301)
222 3e70_C DPA, signal recognition 97.7 6.1E-05 2.1E-09 78.7 8.7 117 297-424 129-281 (328)
223 2yhs_A FTSY, cell division pro 97.7 8.9E-05 3.1E-09 81.4 9.7 25 296-320 292-316 (503)
224 1rj9_A FTSY, signal recognitio 97.7 0.00012 4E-09 75.7 10.0 24 297-320 102-125 (304)
225 1j8m_F SRP54, signal recogniti 97.7 0.00014 4.7E-09 74.8 10.2 119 297-425 98-253 (297)
226 1zcb_A G alpha I/13; GTP-bindi 97.6 6.3E-05 2.2E-09 79.6 7.0 112 306-425 156-282 (362)
227 3ec1_A YQEH GTPase; atnos1, at 97.6 5.3E-05 1.8E-09 80.2 6.0 53 365-426 60-113 (369)
228 3q5d_A Atlastin-1; G protein, 97.6 0.00019 6.4E-09 78.0 10.1 61 296-356 66-152 (447)
229 3cnl_A YLQF, putative uncharac 97.6 1.2E-05 4.2E-10 81.2 0.6 53 364-427 10-62 (262)
230 3h2y_A GTPase family protein; 97.5 9.5E-05 3.2E-09 78.3 6.4 54 364-426 57-111 (368)
231 1vma_A Cell division protein F 97.5 0.00027 9.1E-09 73.1 9.5 24 296-319 103-126 (306)
232 2xxa_A Signal recognition part 97.3 0.00025 8.5E-09 76.8 6.9 119 296-425 99-254 (433)
233 3tif_A Uncharacterized ABC tra 97.3 0.00017 5.9E-09 71.5 5.0 37 298-345 32-68 (235)
234 2pcj_A ABC transporter, lipopr 97.3 0.00019 6.5E-09 70.6 4.9 37 298-345 31-67 (224)
235 1zu4_A FTSY; GTPase, signal re 97.2 0.00087 3E-08 69.6 9.6 24 296-319 104-127 (320)
236 3gfo_A Cobalt import ATP-bindi 97.2 0.00023 8E-09 72.4 5.1 38 298-346 35-72 (275)
237 2onk_A Molybdate/tungstate ABC 97.2 0.00026 8.9E-09 70.5 5.3 36 298-344 25-60 (240)
238 1b0u_A Histidine permease; ABC 97.2 0.00026 9E-09 71.3 5.0 38 298-346 33-70 (262)
239 1g6h_A High-affinity branched- 97.2 0.00026 8.9E-09 71.1 5.0 37 298-345 34-70 (257)
240 1ji0_A ABC transporter; ATP bi 97.2 0.00029 9.8E-09 70.1 5.0 36 298-344 33-68 (240)
241 2px0_A Flagellar biosynthesis 97.2 0.00014 4.9E-09 74.6 2.8 23 297-319 105-127 (296)
242 4g1u_C Hemin import ATP-bindin 97.1 0.00026 8.9E-09 71.6 4.5 36 298-344 38-73 (266)
243 2olj_A Amino acid ABC transpor 97.1 0.00031 1.1E-08 70.9 5.0 37 298-345 51-87 (263)
244 2pze_A Cystic fibrosis transme 97.1 0.00033 1.1E-08 69.1 5.0 35 298-343 35-69 (229)
245 1sgw_A Putative ABC transporte 97.1 0.00029 9.8E-09 69.1 4.4 36 298-344 36-71 (214)
246 2ff7_A Alpha-hemolysin translo 97.1 0.00033 1.1E-08 70.0 5.0 36 298-344 36-71 (247)
247 1vpl_A ABC transporter, ATP-bi 97.1 0.00035 1.2E-08 70.3 5.0 36 298-344 42-77 (256)
248 2cbz_A Multidrug resistance-as 97.1 0.00033 1.1E-08 69.5 4.6 35 298-343 32-66 (237)
249 2ihy_A ABC transporter, ATP-bi 97.1 0.00039 1.3E-08 70.9 5.0 38 298-346 48-85 (279)
250 2ffh_A Protein (FFH); SRP54, s 97.1 0.00043 1.5E-08 74.7 5.5 119 296-425 97-251 (425)
251 2rcn_A Probable GTPase ENGC; Y 97.1 0.00047 1.6E-08 72.8 5.6 25 298-322 216-240 (358)
252 2qi9_C Vitamin B12 import ATP- 97.1 0.00042 1.4E-08 69.4 5.0 35 298-344 27-61 (249)
253 2yz2_A Putative ABC transporte 97.1 0.00041 1.4E-08 70.0 5.0 36 298-344 34-69 (266)
254 2ixe_A Antigen peptide transpo 97.1 0.00041 1.4E-08 70.3 5.0 36 298-344 46-81 (271)
255 1mv5_A LMRA, multidrug resista 97.0 0.00033 1.1E-08 69.7 3.9 35 298-343 29-63 (243)
256 1t9h_A YLOQ, probable GTPase E 97.0 0.00018 6.3E-09 74.4 2.0 55 298-356 174-236 (307)
257 3tui_C Methionine import ATP-b 97.0 0.00059 2E-08 72.3 5.4 37 298-345 55-91 (366)
258 2yv5_A YJEQ protein; hydrolase 97.0 0.00066 2.3E-08 69.7 5.6 23 298-321 166-188 (302)
259 1u0l_A Probable GTPase ENGC; p 97.0 0.00041 1.4E-08 71.1 4.0 24 298-321 170-193 (301)
260 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00068 2.3E-08 71.6 5.4 36 298-344 31-66 (359)
261 1ls1_A Signal recognition part 96.9 0.00084 2.9E-08 68.8 5.6 119 296-425 97-251 (295)
262 2pjz_A Hypothetical protein ST 96.9 0.00079 2.7E-08 68.0 5.0 35 298-344 31-65 (263)
263 3nh6_A ATP-binding cassette SU 96.8 0.00052 1.8E-08 70.9 3.7 36 298-344 81-116 (306)
264 3rlf_A Maltose/maltodextrin im 96.8 0.00087 3E-08 71.3 5.4 23 298-320 30-52 (381)
265 1z47_A CYSA, putative ABC-tran 96.8 0.00087 3E-08 70.7 5.4 35 298-343 42-76 (355)
266 2yyz_A Sugar ABC transporter, 96.8 0.0009 3.1E-08 70.7 5.4 23 298-320 30-52 (359)
267 1g29_1 MALK, maltose transport 96.8 0.00098 3.3E-08 70.7 5.7 23 298-320 30-52 (372)
268 2it1_A 362AA long hypothetical 96.8 0.00095 3.2E-08 70.6 5.4 23 298-320 30-52 (362)
269 3l82_B F-box only protein 4; T 96.8 0.0026 9E-08 62.4 8.0 24 539-562 199-222 (227)
270 2bbs_A Cystic fibrosis transme 96.8 0.00074 2.5E-08 69.2 4.1 35 298-343 65-99 (290)
271 1v43_A Sugar-binding transport 96.8 0.0011 3.6E-08 70.4 5.4 35 298-343 38-72 (372)
272 2ghi_A Transport protein; mult 96.8 0.001 3.4E-08 67.0 5.0 23 298-320 47-69 (260)
273 2d2e_A SUFC protein; ABC-ATPas 96.8 0.0011 3.7E-08 66.2 5.1 38 298-344 30-67 (250)
274 2zu0_C Probable ATP-dependent 96.7 0.0011 3.7E-08 67.0 4.8 38 298-344 47-84 (267)
275 1znw_A Guanylate kinase, GMP k 96.7 0.00065 2.2E-08 65.3 3.0 23 298-320 21-43 (207)
276 2nq2_C Hypothetical ABC transp 96.7 0.001 3.5E-08 66.7 4.5 23 298-320 32-54 (253)
277 3ney_A 55 kDa erythrocyte memb 96.7 0.00056 1.9E-08 66.3 2.4 56 297-354 19-76 (197)
278 3d31_A Sulfate/molybdate ABC t 96.7 0.00089 3E-08 70.4 4.2 35 298-343 27-61 (348)
279 1oxx_K GLCV, glucose, ABC tran 96.7 0.0008 2.7E-08 70.9 3.7 36 298-344 32-67 (353)
280 1ye8_A Protein THEP1, hypothet 96.6 0.00082 2.8E-08 63.7 3.1 22 299-320 2-23 (178)
281 3tr0_A Guanylate kinase, GMP k 96.6 0.001 3.4E-08 63.0 3.1 23 298-320 8-30 (205)
282 1lvg_A Guanylate kinase, GMP k 96.5 0.00088 3E-08 64.2 2.5 23 298-320 5-27 (198)
283 1azs_C GS-alpha; complex (lyas 96.5 0.0018 6.1E-08 69.4 5.0 81 337-425 210-298 (402)
284 1htw_A HI0065; nucleotide-bind 96.5 0.0011 3.9E-08 61.7 3.0 24 298-321 34-57 (158)
285 4dzz_A Plasmid partitioning pr 96.5 0.012 4E-07 55.5 10.2 66 345-423 77-142 (206)
286 1kgd_A CASK, peripheral plasma 96.5 0.0012 4.2E-08 62.0 3.1 23 298-320 6-28 (180)
287 3a00_A Guanylate kinase, GMP k 96.5 0.001 3.5E-08 62.8 2.4 23 298-320 2-24 (186)
288 3b85_A Phosphate starvation-in 96.4 0.0012 4.1E-08 64.2 2.4 23 298-320 23-45 (208)
289 1z6g_A Guanylate kinase; struc 96.4 0.0013 4.3E-08 64.1 2.5 23 298-320 24-46 (218)
290 3c8u_A Fructokinase; YP_612366 96.3 0.0018 6E-08 62.3 3.4 24 297-320 22-45 (208)
291 1s96_A Guanylate kinase, GMP k 96.3 0.0016 5.5E-08 63.8 3.1 23 298-320 17-39 (219)
292 1zp6_A Hypothetical protein AT 96.3 0.0024 8E-08 59.8 4.0 23 298-320 10-32 (191)
293 2f1r_A Molybdopterin-guanine d 96.3 0.0007 2.4E-08 64.0 0.2 23 298-320 3-25 (171)
294 4gp7_A Metallophosphoesterase; 96.2 0.0021 7.3E-08 59.9 3.1 22 298-319 10-31 (171)
295 3asz_A Uridine kinase; cytidin 96.2 0.0023 7.9E-08 61.1 3.2 24 297-320 6-29 (211)
296 3gd7_A Fusion complex of cysti 96.1 0.0037 1.3E-07 66.6 4.9 23 298-320 48-70 (390)
297 3b5x_A Lipid A export ATP-bind 96.1 0.0033 1.1E-07 70.3 4.6 37 298-345 370-406 (582)
298 2gza_A Type IV secretion syste 96.1 0.0025 8.6E-08 67.0 3.5 23 298-320 176-198 (361)
299 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0021 7.1E-08 67.0 2.6 22 299-320 173-194 (330)
300 3b60_A Lipid A export ATP-bind 96.1 0.0036 1.2E-07 69.9 4.7 36 298-344 370-405 (582)
301 2eyu_A Twitching motility prot 96.0 0.0028 9.6E-08 63.8 3.1 23 298-320 26-48 (261)
302 3qf4_B Uncharacterized ABC tra 96.0 0.0035 1.2E-07 70.3 4.2 36 298-344 382-417 (598)
303 2yl4_A ATP-binding cassette SU 96.0 0.0034 1.2E-07 70.3 4.1 36 298-344 371-406 (595)
304 2xtz_A Guanine nucleotide-bind 95.9 0.0028 9.5E-08 66.8 2.7 73 345-425 184-264 (354)
305 3tau_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 59.9 3.6 24 298-321 9-32 (208)
306 4a82_A Cystic fibrosis transme 95.9 0.0033 1.1E-07 70.3 3.4 36 298-344 368-403 (578)
307 1nij_A Hypothetical protein YJ 95.9 0.0028 9.5E-08 65.4 2.6 25 296-320 3-27 (318)
308 2bdt_A BH3686; alpha-beta prot 95.9 0.0035 1.2E-07 58.8 3.0 22 298-319 3-24 (189)
309 3l2o_B F-box only protein 4; s 95.9 0.012 4.1E-07 60.4 7.0 25 539-563 284-308 (312)
310 3lnc_A Guanylate kinase, GMP k 95.9 0.0027 9.2E-08 61.8 2.1 23 298-320 28-51 (231)
311 2i3b_A HCR-ntpase, human cance 95.8 0.0034 1.2E-07 60.1 2.5 22 299-320 3-24 (189)
312 2j41_A Guanylate kinase; GMP, 95.8 0.005 1.7E-07 58.1 3.6 24 298-321 7-30 (207)
313 4a74_A DNA repair and recombin 95.8 0.0039 1.3E-07 59.8 2.8 23 298-320 26-48 (231)
314 2v9p_A Replication protein E1; 95.8 0.0039 1.3E-07 64.3 3.0 23 298-320 127-149 (305)
315 3qf4_A ABC transporter, ATP-bi 95.8 0.0047 1.6E-07 69.2 3.9 36 298-344 370-405 (587)
316 1t9h_A YLOQ, probable GTPase E 95.8 0.0014 4.9E-08 67.7 -0.4 51 373-428 84-134 (307)
317 4eun_A Thermoresistant glucoki 95.8 0.0049 1.7E-07 58.7 3.3 23 298-320 30-52 (200)
318 2bbw_A Adenylate kinase 4, AK4 95.8 0.0055 1.9E-07 60.2 3.8 24 297-320 27-53 (246)
319 2ehv_A Hypothetical protein PH 95.7 0.005 1.7E-07 59.8 3.4 22 298-319 31-52 (251)
320 3aez_A Pantothenate kinase; tr 95.7 0.0053 1.8E-07 63.4 3.7 25 296-320 89-113 (312)
321 2jeo_A Uridine-cytidine kinase 95.7 0.0056 1.9E-07 60.3 3.6 24 297-320 25-48 (245)
322 3ozx_A RNAse L inhibitor; ATP 95.6 0.0071 2.4E-07 67.1 4.4 24 298-321 295-318 (538)
323 1kag_A SKI, shikimate kinase I 95.6 0.0047 1.6E-07 56.8 2.5 23 298-320 5-27 (173)
324 4b4t_L 26S protease subunit RP 95.6 0.16 5.5E-06 54.8 14.9 23 298-320 216-238 (437)
325 2rcn_A Probable GTPase ENGC; Y 95.6 0.031 1E-06 58.9 8.9 47 373-428 128-177 (358)
326 3uie_A Adenylyl-sulfate kinase 95.5 0.0079 2.7E-07 57.2 3.7 24 297-320 25-48 (200)
327 2oap_1 GSPE-2, type II secreti 95.5 0.0057 1.9E-07 67.5 3.1 22 299-320 262-283 (511)
328 3ozx_A RNAse L inhibitor; ATP 95.5 0.0061 2.1E-07 67.7 3.2 24 298-321 26-49 (538)
329 4b4t_K 26S protease regulatory 95.5 0.12 4.1E-06 55.7 13.2 23 298-320 207-229 (428)
330 1np6_A Molybdopterin-guanine d 95.5 0.007 2.4E-07 57.2 3.2 24 297-320 6-29 (174)
331 1knq_A Gluconate kinase; ALFA/ 95.5 0.0086 2.9E-07 55.3 3.7 24 297-320 8-31 (175)
332 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0075 2.6E-07 66.9 3.5 24 298-321 48-71 (538)
333 3euj_A Chromosome partition pr 95.4 0.0033 1.1E-07 68.8 0.7 23 298-320 30-52 (483)
334 3jvv_A Twitching mobility prot 95.3 0.007 2.4E-07 63.7 3.0 23 298-320 124-146 (356)
335 3kta_A Chromosome segregation 95.3 0.0075 2.6E-07 56.0 2.9 22 299-320 28-49 (182)
336 1jjv_A Dephospho-COA kinase; P 95.2 0.011 3.6E-07 56.3 3.6 23 298-320 3-25 (206)
337 4f4c_A Multidrug resistance pr 95.2 0.0045 1.5E-07 75.7 1.2 36 298-344 1106-1141(1321)
338 1cke_A CK, MSSA, protein (cyti 95.2 0.0089 3E-07 57.4 3.1 23 298-320 6-28 (227)
339 3tqc_A Pantothenate kinase; bi 95.2 0.025 8.5E-07 58.7 6.6 25 296-320 91-115 (321)
340 1sq5_A Pantothenate kinase; P- 95.2 0.0096 3.3E-07 61.0 3.4 24 297-320 80-103 (308)
341 3b9q_A Chloroplast SRP recepto 95.2 0.01 3.5E-07 61.0 3.5 24 297-320 100-123 (302)
342 3j16_B RLI1P; ribosome recycli 95.2 0.0094 3.2E-07 67.1 3.5 24 298-321 104-127 (608)
343 1lw7_A Transcriptional regulat 95.1 0.0074 2.5E-07 63.2 2.5 23 298-320 171-193 (365)
344 3cwq_A Para family chromosome 95.1 0.074 2.5E-06 51.0 9.4 65 345-425 69-134 (209)
345 2if2_A Dephospho-COA kinase; a 95.1 0.0097 3.3E-07 56.3 3.0 23 298-320 2-24 (204)
346 4b4t_J 26S protease regulatory 95.1 0.18 6E-06 54.0 13.0 23 298-320 183-205 (405)
347 4e22_A Cytidylate kinase; P-lo 95.1 0.013 4.4E-07 58.2 3.9 22 297-318 27-48 (252)
348 2x8a_A Nuclear valosin-contain 95.1 0.023 7.8E-07 57.3 5.8 21 300-320 47-67 (274)
349 2ewv_A Twitching motility prot 95.1 0.0093 3.2E-07 63.0 3.0 23 298-320 137-159 (372)
350 2iw3_A Elongation factor 3A; a 95.1 0.0094 3.2E-07 70.4 3.2 35 298-343 700-734 (986)
351 3lw7_A Adenylate kinase relate 95.0 0.012 4.2E-07 53.2 3.3 20 298-317 2-21 (179)
352 1p9r_A General secretion pathw 95.0 0.01 3.6E-07 63.8 3.0 23 298-320 168-190 (418)
353 3kb2_A SPBC2 prophage-derived 94.9 0.013 4.6E-07 53.3 3.3 23 298-320 2-24 (173)
354 2obl_A ESCN; ATPase, hydrolase 94.9 0.013 4.5E-07 61.4 3.7 23 298-320 72-94 (347)
355 3ec2_A DNA replication protein 94.9 0.0098 3.4E-07 55.3 2.4 23 298-320 39-61 (180)
356 3bk7_A ABC transporter ATP-bin 94.9 0.011 3.9E-07 66.4 3.2 24 298-321 118-141 (607)
357 2qt1_A Nicotinamide riboside k 94.9 0.016 5.6E-07 55.0 3.8 24 297-320 21-44 (207)
358 1rz3_A Hypothetical protein rb 94.9 0.014 4.9E-07 55.6 3.4 24 297-320 22-45 (201)
359 3h4m_A Proteasome-activating n 94.8 0.22 7.5E-06 49.3 12.3 24 297-320 51-74 (285)
360 2qor_A Guanylate kinase; phosp 94.8 0.014 4.7E-07 55.7 3.1 24 297-320 12-35 (204)
361 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.019 6.4E-07 52.6 3.9 21 298-318 24-44 (149)
362 2npi_A Protein CLP1; CLP1-PCF1 94.8 0.0096 3.3E-07 64.8 2.2 24 298-321 139-162 (460)
363 3g5u_A MCG1178, multidrug resi 94.8 0.016 5.4E-07 70.7 4.4 35 298-343 417-451 (1284)
364 1yqt_A RNAse L inhibitor; ATP- 94.8 0.014 4.9E-07 64.7 3.5 24 298-321 313-336 (538)
365 2dpy_A FLII, flagellum-specifi 94.7 0.016 5.4E-07 62.7 3.7 23 298-320 158-180 (438)
366 2vp4_A Deoxynucleoside kinase; 94.7 0.013 4.6E-07 57.1 2.8 24 297-320 20-43 (230)
367 4b4t_I 26S protease regulatory 94.7 0.26 9E-06 53.1 12.9 23 298-320 217-239 (437)
368 1xjc_A MOBB protein homolog; s 94.6 0.019 6.5E-07 54.1 3.6 25 296-320 3-27 (169)
369 2kjq_A DNAA-related protein; s 94.6 0.012 4E-07 54.0 2.0 23 298-320 37-59 (149)
370 3t61_A Gluconokinase; PSI-biol 94.6 0.015 5.3E-07 55.0 3.0 24 297-320 18-41 (202)
371 2og2_A Putative signal recogni 94.6 0.017 5.9E-07 60.8 3.6 25 296-320 156-180 (359)
372 3bk7_A ABC transporter ATP-bin 94.6 0.016 5.5E-07 65.2 3.5 24 298-321 383-406 (607)
373 3qf7_A RAD50; ABC-ATPase, ATPa 94.6 0.019 6.5E-07 60.4 3.9 21 298-318 24-44 (365)
374 1odf_A YGR205W, hypothetical 3 94.6 0.037 1.3E-06 56.4 5.8 25 296-320 30-54 (290)
375 3vaa_A Shikimate kinase, SK; s 94.5 0.019 6.4E-07 54.5 3.3 24 297-320 25-48 (199)
376 4f4c_A Multidrug resistance pr 94.5 0.023 8E-07 69.4 4.7 35 298-343 445-479 (1321)
377 1bif_A 6-phosphofructo-2-kinas 94.4 0.06 2.1E-06 58.3 7.5 101 297-406 39-150 (469)
378 2w0m_A SSO2452; RECA, SSPF, un 94.3 0.02 6.8E-07 54.5 3.0 23 298-320 24-46 (235)
379 3j16_B RLI1P; ribosome recycli 94.3 0.021 7.1E-07 64.3 3.6 24 298-321 379-402 (608)
380 4b4t_M 26S protease regulatory 94.3 0.3 1E-05 52.7 12.3 24 297-320 215-238 (434)
381 1ex7_A Guanylate kinase; subst 94.3 0.022 7.7E-07 54.4 3.2 21 300-320 4-24 (186)
382 1ly1_A Polynucleotide kinase; 94.2 0.029 9.8E-07 51.4 3.7 22 298-319 3-24 (181)
383 3g5u_A MCG1178, multidrug resi 94.2 0.027 9.4E-07 68.6 4.4 36 298-344 1060-1095(1284)
384 2jaq_A Deoxyguanosine kinase; 94.1 0.027 9.4E-07 52.6 3.4 22 299-320 2-23 (205)
385 4ido_A Atlastin-1; GTPase, GTP 94.1 0.27 9.3E-06 53.3 11.6 23 296-318 66-88 (457)
386 1nks_A Adenylate kinase; therm 94.1 0.029 9.8E-07 51.9 3.5 23 298-320 2-24 (194)
387 1qhx_A CPT, protein (chloramph 94.0 0.031 1.1E-06 51.4 3.4 23 298-320 4-26 (178)
388 2pez_A Bifunctional 3'-phospho 93.9 0.034 1.1E-06 51.5 3.5 23 298-320 6-28 (179)
389 1cr0_A DNA primase/helicase; R 93.8 0.025 8.7E-07 56.9 2.8 23 298-320 36-58 (296)
390 2rhm_A Putative kinase; P-loop 93.8 0.037 1.3E-06 51.4 3.7 23 297-319 5-27 (193)
391 2yvu_A Probable adenylyl-sulfa 93.8 0.043 1.5E-06 51.1 4.1 25 296-320 12-36 (186)
392 1ixz_A ATP-dependent metallopr 93.8 0.028 9.6E-07 55.2 2.9 22 299-320 51-72 (254)
393 1uf9_A TT1252 protein; P-loop, 93.7 0.04 1.4E-06 51.6 3.8 25 296-320 7-31 (203)
394 3trf_A Shikimate kinase, SK; a 93.7 0.037 1.3E-06 51.3 3.5 23 297-319 5-27 (185)
395 1kht_A Adenylate kinase; phosp 93.7 0.037 1.3E-06 51.2 3.4 22 298-319 4-25 (192)
396 1in4_A RUVB, holliday junction 93.7 0.03 1E-06 57.8 3.0 24 297-320 51-74 (334)
397 3qks_A DNA double-strand break 93.7 0.043 1.5E-06 52.7 3.9 22 297-318 23-44 (203)
398 3la6_A Tyrosine-protein kinase 93.6 0.55 1.9E-05 47.5 12.3 66 345-425 203-268 (286)
399 3cm0_A Adenylate kinase; ATP-b 93.6 0.041 1.4E-06 51.0 3.6 22 298-319 5-26 (186)
400 1y63_A LMAJ004144AAA protein; 93.6 0.049 1.7E-06 50.9 4.1 24 297-320 10-33 (184)
401 1qhl_A Protein (cell division 93.5 0.0063 2.1E-07 60.1 -2.3 22 299-320 29-50 (227)
402 4b4t_H 26S protease regulatory 93.5 0.46 1.6E-05 51.6 12.1 24 297-320 243-266 (467)
403 3cf0_A Transitional endoplasmi 93.5 0.24 8.1E-06 50.1 9.4 23 298-320 50-72 (301)
404 3end_A Light-independent proto 93.5 0.17 6E-06 51.0 8.3 67 345-423 158-225 (307)
405 3qkt_A DNA double-strand break 93.4 0.045 1.5E-06 56.7 3.9 22 297-318 23-44 (339)
406 1n0w_A DNA repair protein RAD5 93.4 0.038 1.3E-06 53.2 3.1 23 298-320 25-47 (243)
407 2c95_A Adenylate kinase 1; tra 93.4 0.047 1.6E-06 50.8 3.6 23 297-319 9-31 (196)
408 3iij_A Coilin-interacting nucl 93.3 0.044 1.5E-06 50.7 3.2 23 297-319 11-33 (180)
409 2plr_A DTMP kinase, probable t 93.2 0.058 2E-06 50.7 4.0 22 298-319 5-26 (213)
410 1iy2_A ATP-dependent metallopr 93.2 0.038 1.3E-06 55.2 2.9 22 299-320 75-96 (278)
411 4aby_A DNA repair protein RECN 93.2 0.014 4.7E-07 61.7 -0.4 21 299-319 62-82 (415)
412 1vht_A Dephospho-COA kinase; s 93.2 0.057 2E-06 51.6 4.0 23 297-319 4-26 (218)
413 2ze6_A Isopentenyl transferase 93.2 0.046 1.6E-06 54.3 3.4 22 298-319 2-23 (253)
414 2cvh_A DNA repair and recombin 93.2 0.043 1.5E-06 52.0 3.0 22 298-319 21-42 (220)
415 1gtv_A TMK, thymidylate kinase 93.2 0.022 7.4E-07 54.0 0.9 22 299-320 2-23 (214)
416 2qz4_A Paraplegin; AAA+, SPG7, 93.1 0.4 1.4E-05 46.6 10.0 24 297-320 39-62 (262)
417 1tev_A UMP-CMP kinase; ploop, 93.1 0.057 2E-06 49.9 3.7 22 298-319 4-25 (196)
418 2v54_A DTMP kinase, thymidylat 93.1 0.06 2E-06 50.5 3.9 23 298-320 5-27 (204)
419 2iw3_A Elongation factor 3A; a 93.0 0.04 1.4E-06 65.2 3.0 23 298-320 462-484 (986)
420 1via_A Shikimate kinase; struc 93.0 0.045 1.5E-06 50.5 2.8 23 298-320 5-27 (175)
421 1ukz_A Uridylate kinase; trans 92.9 0.066 2.3E-06 50.4 3.9 24 296-319 14-37 (203)
422 1nn5_A Similar to deoxythymidy 92.9 0.061 2.1E-06 50.8 3.6 23 297-319 9-31 (215)
423 1aky_A Adenylate kinase; ATP:A 92.8 0.065 2.2E-06 51.4 3.7 23 297-319 4-26 (220)
424 1qf9_A UMP/CMP kinase, protein 92.8 0.079 2.7E-06 48.9 4.2 23 297-319 6-28 (194)
425 1m7g_A Adenylylsulfate kinase; 92.8 0.094 3.2E-06 50.0 4.8 23 298-320 26-48 (211)
426 3nwj_A ATSK2; P loop, shikimat 92.7 0.044 1.5E-06 54.7 2.4 23 298-320 49-71 (250)
427 1e69_A Chromosome segregation 92.7 0.045 1.5E-06 56.2 2.6 21 299-319 26-46 (322)
428 2wwf_A Thymidilate kinase, put 92.6 0.063 2.2E-06 50.7 3.4 23 297-319 10-32 (212)
429 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.072 2.5E-06 52.9 3.9 23 297-319 4-26 (260)
430 3fb4_A Adenylate kinase; psych 92.6 0.064 2.2E-06 51.0 3.4 21 299-319 2-22 (216)
431 1zd8_A GTP:AMP phosphotransfer 92.6 0.063 2.1E-06 51.8 3.3 23 297-319 7-29 (227)
432 2bwj_A Adenylate kinase 5; pho 92.6 0.065 2.2E-06 49.9 3.4 23 298-320 13-35 (199)
433 2z0h_A DTMP kinase, thymidylat 92.5 0.069 2.4E-06 49.7 3.4 22 299-320 2-23 (197)
434 2cdn_A Adenylate kinase; phosp 92.5 0.087 3E-06 49.7 4.1 23 297-319 20-42 (201)
435 1w1w_A Structural maintenance 92.5 0.055 1.9E-06 57.8 3.0 23 298-320 27-49 (430)
436 2pbr_A DTMP kinase, thymidylat 92.4 0.072 2.5E-06 49.3 3.4 21 299-319 2-22 (195)
437 1e6c_A Shikimate kinase; phosp 92.4 0.065 2.2E-06 48.8 3.0 22 298-319 3-24 (173)
438 1xwi_A SKD1 protein; VPS4B, AA 92.4 0.76 2.6E-05 47.0 11.4 23 298-320 46-68 (322)
439 1zak_A Adenylate kinase; ATP:A 92.4 0.065 2.2E-06 51.5 3.0 23 297-319 5-27 (222)
440 1svm_A Large T antigen; AAA+ f 92.4 0.067 2.3E-06 56.6 3.4 23 298-320 170-192 (377)
441 2o5v_A DNA replication and rep 92.3 0.063 2.2E-06 56.5 3.1 22 298-319 27-48 (359)
442 2pt5_A Shikimate kinase, SK; a 92.3 0.08 2.7E-06 48.1 3.4 21 299-319 2-22 (168)
443 3dl0_A Adenylate kinase; phosp 92.3 0.076 2.6E-06 50.6 3.4 21 299-319 2-22 (216)
444 3ux8_A Excinuclease ABC, A sub 92.2 0.043 1.5E-06 62.2 1.8 21 298-318 349-369 (670)
445 2iyv_A Shikimate kinase, SK; t 92.2 0.062 2.1E-06 49.8 2.6 22 298-319 3-24 (184)
446 1nlf_A Regulatory protein REPA 92.2 0.063 2.2E-06 53.6 2.8 22 298-319 31-52 (279)
447 1gvn_B Zeta; postsegregational 92.1 0.088 3E-06 53.4 3.8 24 297-320 33-56 (287)
448 3r20_A Cytidylate kinase; stru 92.0 0.086 3E-06 52.1 3.6 23 297-319 9-31 (233)
449 3ake_A Cytidylate kinase; CMP 91.9 0.079 2.7E-06 49.7 3.0 22 298-319 3-24 (208)
450 2vli_A Antibiotic resistance p 91.9 0.065 2.2E-06 49.3 2.3 22 298-319 6-27 (183)
451 1lv7_A FTSH; alpha/beta domain 91.9 0.084 2.9E-06 51.8 3.3 23 298-320 46-68 (257)
452 3t15_A Ribulose bisphosphate c 91.8 0.31 1.1E-05 49.2 7.5 23 298-320 37-59 (293)
453 2p5t_B PEZT; postsegregational 91.7 0.076 2.6E-06 52.5 2.8 25 296-320 31-55 (253)
454 3b9p_A CG5977-PA, isoform A; A 91.7 0.31 1E-05 48.6 7.3 24 297-320 54-77 (297)
455 3tlx_A Adenylate kinase 2; str 91.7 0.11 3.8E-06 51.0 4.0 23 297-319 29-51 (243)
456 1q3t_A Cytidylate kinase; nucl 91.6 0.099 3.4E-06 50.8 3.5 23 297-319 16-38 (236)
457 1uj2_A Uridine-cytidine kinase 91.6 0.11 3.8E-06 51.1 3.8 24 296-319 21-44 (252)
458 3ux8_A Excinuclease ABC, A sub 91.6 0.11 3.7E-06 58.9 4.2 17 298-314 45-61 (670)
459 3hu3_A Transitional endoplasmi 91.5 1.2 4E-05 48.7 12.2 24 297-320 238-261 (489)
460 1jbk_A CLPB protein; beta barr 91.5 0.12 4.1E-06 46.8 3.8 23 298-320 44-66 (195)
461 4eaq_A DTMP kinase, thymidylat 91.5 0.12 4.3E-06 50.4 4.0 24 297-320 26-49 (229)
462 1tf7_A KAIC; homohexamer, hexa 91.5 0.078 2.7E-06 58.3 2.8 33 529-563 275-307 (525)
463 3syl_A Protein CBBX; photosynt 91.4 0.33 1.1E-05 48.6 7.1 25 296-320 66-90 (309)
464 1e4v_A Adenylate kinase; trans 91.4 0.1 3.5E-06 49.8 3.2 21 299-319 2-22 (214)
465 3cr8_A Sulfate adenylyltranfer 91.3 0.059 2E-06 59.9 1.5 23 298-320 370-392 (552)
466 1zuh_A Shikimate kinase; alpha 91.3 0.12 4.2E-06 47.1 3.5 24 296-319 6-29 (168)
467 2grj_A Dephospho-COA kinase; T 91.2 0.13 4.4E-06 49.1 3.6 25 296-320 11-35 (192)
468 1fnn_A CDC6P, cell division co 91.1 0.23 8E-06 51.0 5.8 23 298-320 45-67 (389)
469 3auy_A DNA double-strand break 91.1 0.12 4.2E-06 54.1 3.7 22 297-318 25-46 (371)
470 2f6r_A COA synthase, bifunctio 91.0 0.14 4.8E-06 51.6 4.0 24 296-319 74-97 (281)
471 3be4_A Adenylate kinase; malar 91.0 0.1 3.5E-06 50.1 2.8 22 298-319 6-27 (217)
472 3umf_A Adenylate kinase; rossm 91.0 0.15 5.1E-06 49.8 4.0 25 296-320 28-52 (217)
473 1ewq_A DNA mismatch repair pro 91.0 0.097 3.3E-06 60.4 3.0 23 298-320 577-599 (765)
474 3d8b_A Fidgetin-like protein 1 91.0 0.71 2.4E-05 47.9 9.4 24 297-320 117-140 (357)
475 2xb4_A Adenylate kinase; ATP-b 90.9 0.13 4.4E-06 49.7 3.4 21 299-319 2-22 (223)
476 1wb9_A DNA mismatch repair pro 90.8 0.1 3.5E-06 60.5 3.1 23 298-320 608-630 (800)
477 3cf2_A TER ATPase, transitiona 90.8 0.94 3.2E-05 52.5 11.0 24 297-320 238-261 (806)
478 4fcw_A Chaperone protein CLPB; 90.8 0.39 1.3E-05 47.9 7.1 23 298-320 48-70 (311)
479 1pzn_A RAD51, DNA repair and r 90.7 0.11 3.7E-06 54.3 2.8 23 298-320 132-154 (349)
480 1ak2_A Adenylate kinase isoenz 90.7 0.16 5.4E-06 49.3 3.9 24 297-320 16-39 (233)
481 1sxj_E Activator 1 40 kDa subu 90.5 0.11 3.7E-06 53.2 2.6 22 298-319 37-58 (354)
482 3vfd_A Spastin; ATPase, microt 90.5 0.86 2.9E-05 47.7 9.5 24 297-320 148-171 (389)
483 3bos_A Putative DNA replicatio 90.4 0.16 5.5E-06 48.2 3.6 23 298-320 53-75 (242)
484 3exa_A TRNA delta(2)-isopenten 90.1 0.18 6.2E-06 52.2 3.9 24 297-320 3-26 (322)
485 2ce7_A Cell division protein F 89.9 0.61 2.1E-05 50.8 8.1 22 299-320 51-72 (476)
486 2w58_A DNAI, primosome compone 89.9 0.18 6.1E-06 47.3 3.4 23 298-320 55-77 (202)
487 2p65_A Hypothetical protein PF 89.9 0.16 5.3E-06 46.1 2.9 23 298-320 44-66 (187)
488 1a7j_A Phosphoribulokinase; tr 89.8 0.11 3.7E-06 52.8 1.8 23 297-319 5-27 (290)
489 1ltq_A Polynucleotide kinase; 89.8 0.19 6.5E-06 50.4 3.6 22 298-319 3-24 (301)
490 3a8t_A Adenylate isopentenyltr 89.7 0.23 7.7E-06 51.9 4.2 23 298-320 41-63 (339)
491 2dr3_A UPF0273 protein PH0284; 89.6 0.18 6.2E-06 48.4 3.2 21 298-318 24-44 (247)
492 3sr0_A Adenylate kinase; phosp 89.4 0.21 7.1E-06 48.2 3.4 22 299-320 2-23 (206)
493 1ypw_A Transitional endoplasmi 89.3 0.73 2.5E-05 53.4 8.6 24 297-320 238-261 (806)
494 3d3q_A TRNA delta(2)-isopenten 89.3 0.21 7E-06 52.2 3.6 23 298-320 8-30 (340)
495 1njg_A DNA polymerase III subu 89.2 0.26 8.8E-06 46.2 3.9 22 298-319 46-67 (250)
496 3eie_A Vacuolar protein sortin 89.0 0.59 2E-05 47.6 6.7 24 297-320 51-74 (322)
497 1sxj_C Activator 1 40 kDa subu 88.7 0.2 6.8E-06 51.4 2.9 24 297-320 46-69 (340)
498 3foz_A TRNA delta(2)-isopenten 88.6 0.26 8.9E-06 50.9 3.7 24 297-320 10-33 (316)
499 3crm_A TRNA delta(2)-isopenten 88.6 0.25 8.6E-06 51.2 3.6 23 298-320 6-28 (323)
500 2qby_A CDC6 homolog 1, cell di 88.5 0.2 6.9E-06 51.2 2.8 24 297-320 45-68 (386)
No 1
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=100.00 E-value=1.2e-58 Score=493.24 Aligned_cols=295 Identities=28% Similarity=0.430 Sum_probs=226.8
Q ss_pred hhcHHHHHHHHHhhhhhcCCCcccccCCCCCCCeEEEecccccCCCCCCCceeccchHHHHHHHHhcccccCCCcEEEEC
Q 007599 78 QAKLNEALCLANSLEEQRDGYFDTDFFDKELPPHVVVQNPSLKSGKARADTFFGPGTVETIKCHINGAESKGELDAIFVN 157 (596)
Q Consensus 78 ~~~l~E~~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gk~~el~~~~~~~~~~~~~~~v~~~ 157 (596)
+++|+|+.+||+|+|. .|+..++|+ + +|+|+||||+||++||++ + .++|+||||
T Consensus 10 ~~~~~e~~~l~~~~~~--------------~~~~~~~~~----~-~~~~~~~~g~gk~~e~~~---~----~~~~~v~~~ 63 (364)
T 2qtf_A 10 KEFEEEAIALVEGANY--------------KVTSIYKLP----K-SPNVKFYIQYDKLQQIKN---D----EEISTLIIF 63 (364)
T ss_dssp TTTHHHHHHHHHHTTE--------------EEEEEECCC----S-SCBTTTBSCHHHHHHHHT---C----TTCCEEEES
T ss_pred HHHHHHHHHHHHHCCC--------------EEEEEEEEc----c-CCCCcceechhHHHHHhh---c----cCCCEEEEC
Confidence 4579999999999953 367788886 3 689999999999999998 2 499999999
Q ss_pred CCCCHHHHHHHHHHhCC-CccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCchhhhhhhc
Q 007599 158 AILSGIQQRNLERAWGK-PVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSAR 236 (596)
Q Consensus 158 ~~Lsp~Q~~nle~~~~~-~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~ 236 (596)
++|||+|+||||++|++ +|+||+.|||+||++||.|++||+|++||||.|.+||+ +.|.++ + +
T Consensus 64 ~~l~p~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l--------------~-~ 127 (364)
T 2qtf_A 64 EQLKPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPII-KETYTK--------------S-K 127 (364)
T ss_dssp SCCCHHHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHC--------------------
T ss_pred CCCCHHHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh-hhhhHH--------------H-H
Confidence 99999999999999999 99999999999999999999999999999999999999 666432 1 2
Q ss_pred cCCCCCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007599 237 GRGSGGRGFISGAGETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSA 316 (596)
Q Consensus 237 ~~~~g~~g~~~g~gE~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNa 316 (596)
++ |++|| +||||++++.+++.+..++..++++|+++.+.|...|..|.+. +.++|+|+|++|||||||+|+
T Consensus 128 ~~--~~i~~-~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~------~~~~V~lvG~~naGKSTLln~ 198 (364)
T 2qtf_A 128 IG--EQQGP-LGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRN------NIPSIGIVGYTNSGKTSLFNS 198 (364)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHC-------------------CCEEEEECBTTSSHHHHHHH
T ss_pred hc--CCCCc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------CCcEEEEECCCCCCHHHHHHH
Confidence 22 34555 5999999999999999999999999999998877776665543 678899999999999999999
Q ss_pred HHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCC--hHHHH
Q 007599 317 LSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN--LEEHR 394 (596)
Q Consensus 317 Ltg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~--~~~~~ 394 (596)
|++....+.+.+|+|+++..+.+.+++..+.++||||++..+|+++++.|..++.++..+|++++|+|++++. ...+.
T Consensus 199 L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~ 278 (364)
T 2qtf_A 199 LTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETL 278 (364)
T ss_dssp HHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHH
T ss_pred HHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHH
Confidence 9998877788999999999999999877899999999999999999999999999999999999999998875 45556
Q ss_pred HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 395 TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 395 ~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+.++|..++... .|+|+|+||+|+.+.
T Consensus 279 ~~~~~~L~~l~~~~---~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 279 QSSFEILREIGVSG---KPILVTLNKIDKING 307 (364)
T ss_dssp HHHHHHHHHHTCCS---CCEEEEEECGGGCCS
T ss_pred HHHHHHHHHhCcCC---CCEEEEEECCCCCCc
Confidence 66778888887643 589999999998654
No 2
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=5.3e-23 Score=225.99 Aligned_cols=220 Identities=17% Similarity=0.150 Sum_probs=137.0
Q ss_pred hCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCch
Q 007599 172 WGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAGE 251 (596)
Q Consensus 172 ~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~gE 251 (596)
.|+-++.+++.|.|+.. ...++.++++|++|.+.+++.+..|.. +++.....-...++ +|.|
T Consensus 135 ngk~dL~qaEav~dli~---a~t~~~~~~a~~~l~G~ls~~i~~lr~------------~L~~~~a~iea~iD---f~ee 196 (476)
T 3gee_A 135 NGRIDLLQAEAIGEMIH---ARTESAYRTAVSQMKGDLSVRLGGLRE------------QLIRSCALIELELD---FSEE 196 (476)
T ss_dssp TTSSCHHHHHHHHHHHH---CCSHHHHHHHHHHHHTHHHHHHHHHHT------------HHHHHHHTTTTCSS---CCSS
T ss_pred cCcCcHHHHHHHHHHHh---CCCHHHHHHHHHhhCCcHHHHHHHHHH------------HHHHHHHHhheecC---CCcc
Confidence 48999999999999998 445777888999999988885443211 11111111111233 3544
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCC-ccccccc
Q 007599 252 TELQ-LQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLF 329 (596)
Q Consensus 252 ~~~e-~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f 329 (596)
.++ .+++.+.+++..++++|+++.+.+...+..+. ...|+|+|++|||||||+|+|++.+. .+.+.++
T Consensus 197 -di~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~---------~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~g 266 (476)
T 3gee_A 197 -DVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSE---------GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPG 266 (476)
T ss_dssp -CCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CEEEEEECCTTSSHHHHHHHCC------------
T ss_pred -cccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC---------CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC
Confidence 333 67889999999999999998876654443332 26799999999999999999999764 5677888
Q ss_pred ceecCeeEEEEECCceeEeeeccceeeccchhhHHHH--HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC
Q 007599 330 ATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS 407 (596)
Q Consensus 330 ~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af--~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~ 407 (596)
+|.+.....+.+.+..+.+|||||+.. +.+.++.+ ..+...+..+|++++|+|++++....+......++..+.
T Consensus 267 tT~d~~~~~i~~~g~~l~liDT~G~~~--~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-- 342 (476)
T 3gee_A 267 TTRDYIEECFIHDKTMFRLTDTAGLRE--AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-- 342 (476)
T ss_dssp ------CEEEEETTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--
T ss_pred ceEEEEEEEEEECCeEEEEEECCCCCc--chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--
Confidence 899988888888766999999999965 33444443 455666788999999999998865544445556676664
Q ss_pred cccCCcEEEEEecCCCCCc
Q 007599 408 EEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 408 ~~~~~PiIvVlNKiDlv~~ 426 (596)
..|+|+|+||+|+.+.
T Consensus 343 ---~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 343 ---AAKFLTVANKLDRAAN 358 (476)
T ss_dssp ---TSEEEEEEECTTSCTT
T ss_pred ---CCCEEEEEECcCCCCc
Confidence 2599999999998654
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=2.8e-22 Score=220.48 Aligned_cols=213 Identities=24% Similarity=0.270 Sum_probs=150.0
Q ss_pred hCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCch
Q 007599 172 WGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAGE 251 (596)
Q Consensus 172 ~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~gE 251 (596)
.|.-.++..+.|.|++. |+| ++++|++++++.+.+++..+.|.. .+. ....... ..+ .+|+|
T Consensus 147 nGk~Dl~qaE~i~dli~--a~t-~~~~~~a~~~l~g~l~~~~~~~r~--~l~-------~~~~~ie---~~i---df~ee 208 (482)
T 1xzp_A 147 NGKMDLTSAEAVRDLIE--AKS-ETSLKLSLRNLKGGLRDFVDSLRR--ELI-------EVLAEIR---VEL---DYPDE 208 (482)
T ss_dssp TTSSCHHHHHHHHHHHH--CCS-HHHHHHHHHHHTTHHHHHHHHHHH--HHH-------HHHHHHH---HHH---HSTTT
T ss_pred cCCcCHHHHHHHHHHHh--hcc-HHHHHHHHHhcchhHhHHHHHHHH--HHH-------HHHHHhh---hcC---CCCcc
Confidence 68888899999999995 444 567799999999999987643210 000 0000000 011 24554
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCC-ccccccc
Q 007599 252 TELQ-LQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLF 329 (596)
Q Consensus 252 ~~~e-~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f 329 (596)
++ .+++ +..++..++.+|+++.+.....+..+ ....|+|+|++|||||||+|+|++.+. .+.+.++
T Consensus 209 --i~~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~r---------~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g 276 (482)
T 1xzp_A 209 --IETNTGE-VVTRLERIKEKLTEELKKADAGILLN---------RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG 276 (482)
T ss_dssp --CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---------HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC
T ss_pred --ccchHHH-HHHHHHHHHHHHHHHHHhhhhhhhcc---------CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC
Confidence 44 5666 88999999999998876654333222 137899999999999999999999764 5788899
Q ss_pred ceecCeeEEEEECCceeEeeecccee-eccchhhHHH--HHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC
Q 007599 330 ATLDPRLKSVVLPSGKVLLSDTVGFI-SDLPLQLVDA--FHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV 406 (596)
Q Consensus 330 ~Tld~t~~~i~l~~~~i~liDTpG~i-~~lp~~lv~a--f~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi 406 (596)
+|.++....+.+.+..+.+|||||+. .. .+.++. +..++..+..+|++++|+|++++...+.. .+ ++.+.
T Consensus 277 TT~d~~~~~i~~~g~~~~l~DTaG~~~~~--~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~i---l~~l~- 349 (482)
T 1xzp_A 277 TTRDVISEEIVIRGILFRIVDTAGVRSET--NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KI---LERIK- 349 (482)
T ss_dssp CSSCSCCEEEEETTEEEEEEESSCCCSSC--CTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HH---HHHHT-
T ss_pred eeeeeEEEEEecCCeEEEEEECCCccccc--hhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HH---HHHhc-
Confidence 99999999999876699999999987 32 222221 34456778889999999999887544332 22 33321
Q ss_pred CcccCCcEEEEEecCCCCC
Q 007599 407 SEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 407 ~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|+|+|+||+|+.+
T Consensus 350 ----~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 350 ----NKRYLVVINKVDVVE 364 (482)
T ss_dssp ----TSSEEEEEEECSSCC
T ss_pred ----CCCEEEEEECccccc
Confidence 359999999999854
No 4
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.83 E-value=6.9e-21 Score=208.44 Aligned_cols=219 Identities=24% Similarity=0.242 Sum_probs=135.2
Q ss_pred HhCCCccchhHHHHHHHHhhccchHHHHHHHHHhccccccccccccCCCCCcccccCchhhhhhhccCCCCCCCccCCCc
Q 007599 171 AWGKPVLDRVGLIIEIFNAHAHTKEAKLQAELAALMYKKSRLVRVRGPDGRLTFGETGEAEVVSARGRGSGGRGFISGAG 250 (596)
Q Consensus 171 ~~~~~v~DR~~lIL~IF~~rA~t~eaklQveLA~l~y~~~rl~~~~~~~~~~~~~~~g~~e~~~~~~~~~g~~g~~~g~g 250 (596)
..|+-++.+++.|.|++.+ ..++.++..+++|.-.+++....|... .+...+..|+. .+|.
T Consensus 126 lngk~dL~qaEav~dli~a---~t~~~~~~a~~~l~g~~~~~~~~~r~~-l~~~~a~iEa~-----------iDf~---- 186 (462)
T 3geh_A 126 LNGRLDLTQAESIADLVGA---RSPQAAQTALAGLQGKLAHPIRQLRAN-CLDILAEIEAR-----------IDFE---- 186 (462)
T ss_dssp HTTSCCHHHHHHHHHHHHC---CSHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHHHH-----------TTSS----
T ss_pred hcCCcCHHHHHHHHHHHhC---CCHHHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHHHhh-----------cccc----
Confidence 3588899999999999983 456667778888877766643321100 00000111111 1221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCC-ccccccc
Q 007599 251 ETELQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLF 329 (596)
Q Consensus 251 E~~~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f 329 (596)
|..-+.+++.+..++..++++|+++.+.+...+..+. ..+|+++|++|||||||+|+|++.+. .+.+.++
T Consensus 187 ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~---------~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g 257 (462)
T 3geh_A 187 EDLPPLDDEAIISDIENIAAEISQLLATKDKGELLRT---------GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG 257 (462)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHH---------CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT
T ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---------CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC
Confidence 1111234566777888888888887665543332222 26799999999999999999999754 3566788
Q ss_pred ceecCeeEEEEECCceeEeeeccceeeccchhhHHHH--HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC
Q 007599 330 ATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF--HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS 407 (596)
Q Consensus 330 ~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af--~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~ 407 (596)
+|.+.....+.+.+..+.+|||||+.. +.+.++.+ ..+...+..+|++++|+|++++..... . .++..+.-
T Consensus 258 tT~d~~~~~i~~~g~~v~liDT~G~~~--~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~---~i~~~l~~- 330 (462)
T 3geh_A 258 TTRDVVESQLVVGGIPVQVLDTAGIRE--TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-Q---EIYEQVKH- 330 (462)
T ss_dssp CCHHHHHHEEEETTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHH-H---HHHHHHTT-
T ss_pred eeEEEEEEEEEECCEEEEEEECCcccc--chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-H---HHHHhccC-
Confidence 888887778888766999999999964 23334443 455666778999999999998754433 2 33444332
Q ss_pred cccCCcEEEEEecCCCCCccc
Q 007599 408 EEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 408 ~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.|+|+|+||+|+.+...
T Consensus 331 ----~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 331 ----RPLILVMNKIDLVEKQL 347 (462)
T ss_dssp ----SCEEEEEECTTSSCGGG
T ss_pred ----CcEEEEEECCCCCcchh
Confidence 49999999999876433
No 5
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.82 E-value=2.8e-19 Score=189.12 Aligned_cols=169 Identities=22% Similarity=0.204 Sum_probs=113.9
Q ss_pred CCchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCCc
Q 007599 248 GAGETELQLQRRRILERRSHL----LSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLF 323 (596)
Q Consensus 248 g~gE~~~e~~rr~i~~ri~~l----~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v~ 323 (596)
|+++...+..++.+..++..+ .++++.+.+.++..+..+ ....+.++|+++|++|||||||+|+|++....
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~~v~lvG~~gvGKSTLin~L~~~~~~ 193 (357)
T 2e87_A 119 SNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLP-----VVDLEIPTVVIAGHPNVGKSTLLKALTTAKPE 193 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSC-----CCCSSSCEEEEECSTTSSHHHHHHHHCSSCCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ccCCCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 567888888888888888776 444555554443322211 11235789999999999999999999998766
Q ss_pred ccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHH-HHHhHHHHHhcCEEEEEEeCCCCC---hHHHHHHHHH
Q 007599 324 SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDA-FHATLEEVVEADLLVHVLDCTAPN---LEEHRTTVLQ 399 (596)
Q Consensus 324 ~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~a-f~~tl~e~~~aDliL~VvDas~~~---~~~~~~~v~~ 399 (596)
..+.+++|.+.....+...+..+.++||||+....++..... ..........+|.+++|+|++.+. ...+...+..
T Consensus 194 ~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~ 273 (357)
T 2e87_A 194 IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEE 273 (357)
T ss_dssp EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHH
T ss_pred cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHH
Confidence 677788888887777776655899999999976544332111 111122223589999999987653 3333333333
Q ss_pred HHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 400 VLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 400 iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+....+ ..|+|+|+||+|+...
T Consensus 274 i~~~~~-----~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 274 VHGEFK-----DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHTT-----TSCEEEEECCTTTCCH
T ss_pred HHHhcC-----CCCEEEEEECcccCCh
Confidence 333332 3599999999998653
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.4e-20 Score=195.07 Aligned_cols=163 Identities=19% Similarity=0.200 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCee
Q 007599 257 QRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL 336 (596)
Q Consensus 257 ~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~ 336 (596)
....+..|+++|+++|.+.++.+...+.++ .-...+.|...|+|||+||||||||||+|++....+.+++|+|++|..
T Consensus 34 ~~~~lk~kla~lr~el~~~~~~~~~~~~~~--~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~ 111 (376)
T 4a9a_A 34 HLGQLKAKLAKLRRELLTSASSGSGGGAGI--GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVP 111 (376)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCSB--TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCC--CceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeee
Confidence 344666667777777765443321111000 001145678999999999999999999999998889999999999999
Q ss_pred EEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEE
Q 007599 337 KSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIE 416 (596)
Q Consensus 337 ~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIv 416 (596)
+.+.+++.++.++||||++.. +......+...+..+..||++++|+|+++| ..+.+.+...|..+++.. ..+|.++
T Consensus 112 g~~~~~~~~i~l~D~pGl~~~-a~~~~~~g~~~l~~i~~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l-~~k~~~i 187 (376)
T 4a9a_A 112 GVIRYKGAKIQMLDLPGIIDG-AKDGRGRGKQVIAVARTCNLLFIILDVNKP--LHHKQIIEKELEGVGIRL-NKTPPDI 187 (376)
T ss_dssp EEEEETTEEEEEEECGGGCCC------CHHHHHHHHHHHCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEE-TCCCCCE
T ss_pred EEEEeCCcEEEEEeCCCccCC-chhhhHHHHHHHHHHHhcCccccccccCcc--HHHHHHHHHHHHHhhHhh-ccCChhh
Confidence 999998889999999999864 334344566778889999999999999876 455666777787776543 2358889
Q ss_pred EEecCCCCC
Q 007599 417 VWNKIDYHD 425 (596)
Q Consensus 417 VlNKiDlv~ 425 (596)
|+||+|...
T Consensus 188 ~~nK~d~~g 196 (376)
T 4a9a_A 188 LIKKKEKGG 196 (376)
T ss_dssp EEEECSSSC
T ss_pred hhhHhhhhh
Confidence 999999743
No 7
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.81 E-value=7.9e-20 Score=209.61 Aligned_cols=246 Identities=15% Similarity=0.067 Sum_probs=162.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc------c------c------ccccceecCeeEEEEECC-------ceeEeee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF------S------D------ARLFATLDPRLKSVVLPS-------GKVLLSD 350 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~------~------~------~~~f~Tld~t~~~i~l~~-------~~i~liD 350 (596)
..++|+|+|+.|||||||+++|+..... + . ...+.|+......+.+.+ ..+.+||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 5689999999999999999999743110 0 0 023445555555666655 4889999
Q ss_pred ccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc
Q 007599 351 TVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD 430 (596)
Q Consensus 351 TpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~ 430 (596)
|||+..+. ..+...+..+|.+++|+|++.+. ..+...++..+...++ |+++|+||+|+...+...
T Consensus 89 TPG~~df~--------~~~~~~l~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~i------p~ilviNKiD~~~~~~~~ 153 (704)
T 2rdo_7 89 TPGHVDFT--------IEVERSMRVLDGAVMVYCAVGGV-QPQSETVWRQANKYKV------PRIAFVNKMDRMGANFLK 153 (704)
T ss_pred CCCccchH--------HHHHHHHHHCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC------CEEEEEeCCCcccccHHH
Confidence 99997531 12334456699999999999874 3444455555555554 899999999998764221
Q ss_pred -ccccccccc----ccccc---ccccCCCccccccccccCCCCC-CCCCCCCCCccchhhhhhccccccchhhhccCCCC
Q 007599 431 -VEYIDGDDI----SNFSR---AEDKDTTSEPVDVECIDNYGGD-DADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQ 501 (596)
Q Consensus 431 -~~~~~~~~~----~~~~s---a~~~~gi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~ 501 (596)
.+++...+. ....+ .....|+.++..+..+.+.... +.......++.++.+.....+..+.+.+. +.|++
T Consensus 154 ~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~a-e~dd~ 232 (704)
T 2rdo_7 154 VVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAA-EASEE 232 (704)
T ss_pred HHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHH-hcCHH
Confidence 112111110 01111 2234566777666666552211 11111112333444444455566665543 56666
Q ss_pred CCchhhhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 502 DNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 502 l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
++ +.|+++.+++.+++...+++++..+.++| ++++||.+|.|++.||++|.+.+-.
T Consensus 233 l~--e~~l~~~~l~~~~l~~~l~~~~~~~~~~P----v~~gSa~~~~Gv~~LLd~i~~~lPs 288 (704)
T 2rdo_7 233 LM--EKYLGGEELTEAEIKGALRQRVLNNEIIL----VTCGSAFKNKGVQAMLDAVIDYLPS 288 (704)
T ss_pred HH--HHHhcCCCCCHHHHHHHHHHHHHhCCeeE----EEEeecccCccHHHHHHHHHHHCCC
Confidence 66 88999999999999999999999999999 9999999999999999999988643
No 8
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=4.8e-20 Score=211.06 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=158.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC--C----c------------ccccccceecCeeEEEEECCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD--L----F------------SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~--v----~------------~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
..++|+|+|++|||||||+|+|+... + . .+...+.|+......+.+.+..+.+|||||+..+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 46899999999999999999998311 0 0 0113456666666677776669999999999653
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 436 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~ 436 (596)
...+...+..+|.+++|+|++++... +...++..+...++ |+++|+||+|+...+... .+.+..
T Consensus 91 --------~~~~~~~l~~aD~~ilVvDa~~g~~~-~t~~~~~~~~~~~~------p~ivviNKiD~~~~~~~~~~~~l~~ 155 (691)
T 1dar_A 91 --------TIEVERSMRVLDGAIVVFDSSQGVEP-QSETVWRQAEKYKV------PRIAFANKMDKTGADLWLVIRTMQE 155 (691)
T ss_dssp --------HHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHTTC------CEEEEEECTTSTTCCHHHHHHHHHH
T ss_pred --------HHHHHHHHHHCCEEEEEEECCCCcch-hhHHHHHHHHHcCC------CEEEEEECCCcccCCHHHHHHHHHH
Confidence 11234445669999999999987543 34445555655554 899999999998754210 111111
Q ss_pred ccc----cccc--c-ccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhh
Q 007599 437 DDI----SNFS--R-AEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFW 509 (596)
Q Consensus 437 ~~~----~~~~--s-a~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~ 509 (596)
.+. .... + .....|+.+++....+.|..+.+........+.++.+.....+..+.+.+. +.|++++ ++|+
T Consensus 156 ~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~-e~dd~l~--e~~l 232 (691)
T 1dar_A 156 RLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAA-DFDENIM--LKYL 232 (691)
T ss_dssp TTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHT-TTCHHHH--HHHH
T ss_pred HhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh-hCCHHHH--HHHH
Confidence 110 0111 1 122345555555544434201111111112344455555666667766443 5566666 8899
Q ss_pred ccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 510 NAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
++.+++..++...+++++..+.++| ++++||.+|.|+++||++|.+.+-.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~P----v~~gSA~~~~Gv~~LLd~i~~~lPs 282 (691)
T 1dar_A 233 EGEEPTEEELVAAIRKGTIDLKITP----VFLGSALKNKGVQLLLDAVVDYLPS 282 (691)
T ss_dssp HTCCCCHHHHHHHHHHHHHTTSCEE----EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcEeE----EEEeecccCcCHHHHHHHHHHhCCC
Confidence 9999999999999999999999999 9999999999999999999998754
No 9
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.80 E-value=6.8e-20 Score=209.85 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=156.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC--C----------cccc------cccceecCeeEEEEECCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD--L----------FSDA------RLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~--v----------~~~~------~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
..++|+|+|++|||||||+|+|++.. + ...+ ..+.|+......+.+.+..+.+|||||+..+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 56899999999999999999998421 1 0111 3456666666777776669999999999754
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 436 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~ 436 (596)
.. .+...+..+|++++|+|++++... +...++..+...++ |+|+|+||+|+...+... .+.+..
T Consensus 89 ~~--------~~~~~l~~aD~~llVvDa~~g~~~-~~~~~~~~~~~~~~------p~ilviNK~Dl~~~~~~~~~~~l~~ 153 (693)
T 2xex_A 89 TV--------EVERSLRVLDGAVTVLDAQSGVEP-QTETVWRQATTYGV------PRIVFVNKMDKLGANFEYSVSTLHD 153 (693)
T ss_dssp CH--------HHHHHHHHCSEEEEEEETTTBSCH-HHHHHHHHHHHTTC------CEEEEEECTTSTTCCHHHHHHHHHH
T ss_pred HH--------HHHHHHHHCCEEEEEECCCCCCcH-HHHHHHHHHHHcCC------CEEEEEECCCccccchHHHHHHHHH
Confidence 21 123345569999999999886443 44455556666554 899999999998754210 111111
Q ss_pred cc----ccccccccccCC---CccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhh
Q 007599 437 DD----ISNFSRAEDKDT---TSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFW 509 (596)
Q Consensus 437 ~~----~~~~~sa~~~~g---i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~ 509 (596)
.+ .....+...+.+ +.+++......+..+.+........+..+.+.....+..+.+.+. ++|+.++ ++|+
T Consensus 154 ~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~-e~dd~l~--e~~l 230 (693)
T 2xex_A 154 RLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVA-ETSDELM--EKYL 230 (693)
T ss_dssp HHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHH-TTCHHHH--HHHH
T ss_pred HhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh-hCCHHHH--HHHh
Confidence 11 011122222223 333333332222101111111112334444445555666666543 5666666 8899
Q ss_pred ccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 510 NAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
++.+++..++..++++++..+.++| |+++||.+|.|+++||++|.+.+-.
T Consensus 231 ~~~~~~~~~~~~~l~~~~~~~~~~P----v~~gSA~~~~Gv~~LLd~i~~~lPs 280 (693)
T 2xex_A 231 GDEEISVSELKEAIRQATTNVEFYP----VLCGTAFKNKGVQLMLDAVIDYLPS 280 (693)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSCEE----EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCeee----EEEeecccCcCHHHHHHHHHHHCCC
Confidence 9999999999999999999999999 9999999999999999999998754
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=2.4e-18 Score=178.62 Aligned_cols=124 Identities=24% Similarity=0.279 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEEC-CceeEeeeccceeeccc-hhhHHHH-HHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLP-SGKVLLSDTVGFISDLP-LQLVDAF-HATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~-~~~i~liDTpG~i~~lp-~~lv~af-~~tl~ 371 (596)
....|+++|.+|||||||+|+|+|..+. ....+++|.+...+..... +.++.++||||+..... ..+...+ .....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 3468999999999999999999998865 4566777777776777766 45999999999975321 1222333 23445
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+..+|++++|+|++++........+.+.+...+ .|+|+|+||+|+..
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~------~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKPLN------KPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGC------CCEEEEEECGGGSS
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcC------CCEEEEEECccCCC
Confidence 6678999999999998754444333244444432 49999999999873
No 11
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.79 E-value=5.1e-20 Score=204.67 Aligned_cols=235 Identities=15% Similarity=0.028 Sum_probs=145.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC----------------------cccccccceecCeeEEEEECCceeEeeeccce
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL----------------------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v----------------------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
.++|+|+|++|||||||+|+|++... ..+...+.|.......+.+.+..+.+|||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 47999999999999999999972211 01123566777777788887669999999999
Q ss_pred eeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-ccc
Q 007599 355 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEY 433 (596)
Q Consensus 355 i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~ 433 (596)
..+. ..+...+..+|++++|+|++++.. .+...++..+...++ |+|+|+||+|+....... .++
T Consensus 93 ~df~--------~~~~~~l~~aD~allVvDa~~g~~-~~t~~~~~~~~~~~i------PiivviNK~Dl~~~~~~~~l~e 157 (528)
T 3tr5_A 93 ADFT--------EDTYRTLTAVDSALMVIDAAKGVE-PRTIKLMEVCRLRHT------PIMTFINKMDRDTRPSIELLDE 157 (528)
T ss_dssp TTCC--------HHHHHGGGGCSEEEEEEETTTCSC-HHHHHHHHHHHTTTC------CEEEEEECTTSCCSCHHHHHHH
T ss_pred hhHH--------HHHHHHHHhCCEEEEEEeCCCCCC-HHHHHHHHHHHHcCC------CEEEEEeCCCCccccHHHHHHH
Confidence 7542 124455667999999999998743 444555566655553 999999999997654220 111
Q ss_pred cccccc----ccc---ccccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchh
Q 007599 434 IDGDDI----SNF---SRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEE 506 (596)
Q Consensus 434 ~~~~~~----~~~---~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~ 506 (596)
+...+. ... .......|+.+++++..+.+....+........+.++ .+.....++.+. .+
T Consensus 158 i~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~------~~ 224 (528)
T 3tr5_A 158 IESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGI-------NNPELDKKLGDL------AS 224 (528)
T ss_dssp HHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECT-------TCHHHHHHHTHH------HH
T ss_pred HHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCccccccccccc-------chHHHHHHHHHH------HH
Confidence 111110 111 1233467788887777776643322221111111111 111122222110 13
Q ss_pred hhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 507 EFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 507 ~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+|++..++.......-.++++..+.++| |+++||++|.||++||+.|.+.+..
T Consensus 225 ~~~e~~~l~~~~~~~~~~~~~~~~~~~P----V~~gSA~~~~GV~~Lld~i~~~~p~ 277 (528)
T 3tr5_A 225 ELRNEIELVKGASHPFEREGYLKGELTP----IFFGSAINNFGVGELLDAFVKEAPP 277 (528)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHTTSEEE----EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred HHhhhcchhhhhhhHHHHHHHhcCceeE----EEeccccCCccHHHHHHHHHHhCCC
Confidence 4444333222222222378888999988 9999999999999999999988754
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=1.7e-18 Score=163.31 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
..+|+++|++|+|||||+|+|++... .+...+++|.+.....+.+.+..+.+|||||+.......-...+..+...+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999764 34566777777777788887668999999999653211111123344556788
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+|++++|+|++++...... .++..+..... ...|+|+|+||+|+.
T Consensus 84 ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~---~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDPA-EIWPEFIARLP---AKLPITVVRNKADIT 128 (172)
T ss_dssp CSEEEEEEETTTCCCCSHH-HHCHHHHHHSC---TTCCEEEEEECHHHH
T ss_pred CCEEEEEEECCCCCCHHHH-HHHHHHHHhcc---cCCCEEEEEECccCC
Confidence 9999999999876443322 23333333221 235999999999974
No 13
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=5e-19 Score=186.70 Aligned_cols=126 Identities=29% Similarity=0.392 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccch--hhHHHHHHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPL--QLVDAFHATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~--~lv~af~~tl~e~ 373 (596)
++.|+|+|++|||||||+|+|++....+.+++|+|+.+..+.+.+++. .+.++||||++..... .+...| +..+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~f---l~~i 234 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQF---LRHI 234 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHH---HHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHH---HHHH
Confidence 468999999999999999999998877788999999999999998874 8999999998753211 122223 5556
Q ss_pred HhcCEEEEEEeCCC---CChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTA---PNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~---~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|+++||+|+++ .........+...|..+.- ....+|+|+|+||+|+...
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~-~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL-RLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-STTTSCBCBEEECTTSTTH
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh-hhcCCCEEEEEECccCCCC
Confidence 77999999999987 4445555566666666532 1134699999999998653
No 14
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.77 E-value=3.3e-18 Score=159.63 Aligned_cols=120 Identities=23% Similarity=0.274 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
..+|+++|++|||||||+|+|++........++.|.+...+.+.+.+..+.+|||||+....+................+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 36899999999999999999999766566667777787777777766689999999987653332222222222222469
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|+++. .. ...+...+...+ .|+|+|.||+|+..
T Consensus 83 ~~~i~v~D~~~~--~~-~~~~~~~~~~~~------~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 83 DLVVNIVDATAL--ER-NLYLTLQLMEMG------ANLLLALNKMDLAK 122 (165)
T ss_dssp SEEEEEEETTCH--HH-HHHHHHHHHHTT------CCEEEEEECHHHHH
T ss_pred CEEEEEecCCch--hH-hHHHHHHHHhcC------CCEEEEEEchHhcc
Confidence 999999999763 22 222223333322 49999999999753
No 15
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=5.6e-19 Score=178.86 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccch----hhHHHHHHhHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL----QLVDAFHATLEEV 373 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~----~lv~af~~tl~e~ 373 (596)
|+|+++|.+|||||||+|+|+|....+.+.+++|.+...+.+.+.+..+.++||||+.+..+. ...+.+.......
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 689999999999999999999988777788888988888888887779999999999876543 3333333333333
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|+++. +....+...+.+++ .|+|+|+||+|+...
T Consensus 82 ~~~d~vi~VvDas~~---~~~~~l~~~l~~~~------~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 82 LEYDCIINVIDACHL---ERHLYLTSQLFELG------KPVVVALNMMDIAEH 125 (256)
T ss_dssp SCCSEEEEEEEGGGH---HHHHHHHHHHTTSC------SCEEEEEECHHHHHH
T ss_pred CCCCEEEEEeeCCCc---hhHHHHHHHHHHcC------CCEEEEEEChhcCCc
Confidence 679999999999763 22233334444443 499999999998654
No 16
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=2e-17 Score=151.54 Aligned_cols=120 Identities=25% Similarity=0.235 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~~ 375 (596)
++|+++|.+|+|||||+|+|.+.... ....++.|.+.....+.+.+..+.+|||||+..... +...+ ......+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK--WEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS--CCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc--hHHHHHHHHHHHHHh
Confidence 78999999999999999999987643 455666677777777777666899999999975321 11222 223345677
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++.. .....+.+++...+ .|+++|+||+|+.+.
T Consensus 80 ~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~------~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 80 AEVVLFAVDGRAELT-QADYEVAEYLRRKG------KPVILVATKVDDPKH 123 (161)
T ss_dssp CSEEEEEEESSSCCC-HHHHHHHHHHHHHT------CCEEEEEECCCSGGG
T ss_pred CCEEEEEEECCCccc-HhHHHHHHHHHhcC------CCEEEEEECcccccc
Confidence 999999999988633 33345556666543 489999999998543
No 17
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.75 E-value=9e-19 Score=178.77 Aligned_cols=121 Identities=23% Similarity=0.255 Sum_probs=92.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccc----hhhHHHHHHhHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP----LQLVDAFHATLEE 372 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp----~~lv~af~~tl~e 372 (596)
.++|+++|++|||||||+|+|+|....+.+.+++|.+...+.+.+.+..+.+|||||+.+..+ ..+.+.+......
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 378999999999999999999998877778888888888888888777999999999976543 2333334444444
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
...+|++++|+|+++. . ....+...+.+.++ |+|+|+||+|+.+.
T Consensus 83 ~~~~d~ii~VvD~~~~--~-~~~~~~~~l~~~~~------p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 83 SGDADLLINVVDASNL--E-RNLYLTLQLLELGI------PCIVALNMLDIAEK 127 (274)
T ss_dssp HTCCSEEEEEEEGGGH--H-HHHHHHHHHHHHTC------CEEEEEECHHHHHH
T ss_pred hcCCCEEEEEecCCCh--H-HHHHHHHHHHhcCC------CEEEEEECccchhh
Confidence 5689999999999763 2 33334445555554 99999999998543
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.75 E-value=1.4e-18 Score=193.86 Aligned_cols=233 Identities=16% Similarity=0.067 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC----------------------CcccccccceecCeeEEEEECCceeEeeecccee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD----------------------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFI 355 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~----------------------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i 355 (596)
++|||+||.+||||||..+|+-.. ...+...+.|+..+...+.|.+..++|+||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 689999999999999999995211 1234566788888888999987799999999998
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYI 434 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~ 434 (596)
.+. .. +.+.+..+|.+++|||+..+ .+.+...+++.+...++ |.|+++||+|+...+... .+++
T Consensus 112 DF~-----~E---v~raL~~~DgAvlVvda~~G-V~~qT~~v~~~a~~~~l------p~i~fINK~Dr~~ad~~~~~~~i 176 (548)
T 3vqt_A 112 DFS-----ED---TYRVLTAVDSALVVIDAAKG-VEAQTRKLMDVCRMRAT------PVMTFVNKMDREALHPLDVMADI 176 (548)
T ss_dssp GCS-----HH---HHHHHHSCSEEEEEEETTTB-SCHHHHHHHHHHHHTTC------CEEEEEECTTSCCCCHHHHHHHH
T ss_pred HHH-----HH---HHHHHHhcCceEEEeecCCC-cccccHHHHHHHHHhCC------ceEEEEecccchhcchhHhhhhh
Confidence 652 22 33445569999999999987 56788889999999887 899999999998776331 2222
Q ss_pred cccccc----ccc---cccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCc-hh
Q 007599 435 DGDDIS----NFS---RAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNV-EE 506 (596)
Q Consensus 435 ~~~~~~----~~~---sa~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~-~~ 506 (596)
...+.. ... ......|+.+++++..+.+....+......... ....+...+.++....+.... ..
T Consensus 177 ~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 249 (548)
T 3vqt_A 177 EQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVI-------HGADDPQLDEYLGDQAEQLRMDLA 249 (548)
T ss_dssp HHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEEC-------CSTTCTHHHHHHGGGHHHHHHHHH
T ss_pred hhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccc-------cccchHHHHHHHHHHHHHhhhHHH
Confidence 222211 111 233466778887877777754433222211100 001111111111100000000 00
Q ss_pred hhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 507 EFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 507 ~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
.+.. ......+.++..|.++| |+++||.+|.|+++||++|-+.+-.
T Consensus 250 l~~~-------~~~~~~~e~~~~g~~~P----V~~gSA~~~~Gv~~LLd~iv~~~Ps 295 (548)
T 3vqt_A 250 LLEE-------AGTPFDEERYLKGELTP----VFFGSAINNFGVREMLDMFVEFAPG 295 (548)
T ss_dssp HHHH-------HCCCCCHHHHHTTSEEE----EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred HHhh-------ccCchhHHHHHhCCcce----eeecccccCcCHHHHHHHHHHhCCC
Confidence 0000 01111234567788888 9999999999999999999987654
No 19
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=7.2e-18 Score=170.80 Aligned_cols=120 Identities=22% Similarity=0.222 Sum_probs=88.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
.++|+++|.+|+|||||+|+|+|....+.+.++.|.+...+.+...+..+.+|||||+.+..+....+.....+.....+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 84 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDA 84 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCC
Confidence 47899999999999999999999877777778888888777777765699999999998765544333332222222579
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|+++. ..... +...+.+.+ .|+|+|+||+|+..
T Consensus 85 d~ii~V~D~t~~--~~~~~-~~~~l~~~~------~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 85 DLVILVADSVNP--EQSLY-LLLEILEME------KKVILAMTAIDEAK 124 (258)
T ss_dssp SEEEEEEETTSC--HHHHH-HHHHHHTTT------CCEEEEEECHHHHH
T ss_pred CEEEEEeCCCch--hhHHH-HHHHHHhcC------CCEEEEEECcCCCC
Confidence 999999999875 22222 223333333 49999999999854
No 20
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.75 E-value=3.9e-18 Score=165.93 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-C-cccccccceecCeeEEEEECCc-eeEeeeccceeec-cchhhHHHH----H
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-L-FSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISD-LPLQLVDAF----H 367 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-v-~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~-lp~~lv~af----~ 367 (596)
+.++|+|+|.+|+|||||+|+|++.. + .....+++|.+.....+...++ .+.+|||||+... .+....+.+ .
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 56899999999999999999999976 2 4555566666655444432233 8999999997532 111111222 2
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 368 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 368 ~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
..+.....+|++++|+|++++.. .....+..++...+ .|+|+|+||+|+.+...
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~~~------~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAPTG------KPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGGGC------CCEEEEEECGGGSCHHH
T ss_pred HHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHhcC------CCEEEEEeccccCChhh
Confidence 23333444889999999987643 33334445554433 49999999999977543
No 21
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=6.6e-18 Score=157.60 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=85.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
...++|+++|.+|||||||+|+|++........+..|.+.....+.+.+..+.+|||||+...... ....+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 77 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM--------RARGAQ 77 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS--------CCSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH--------HHHHHh
Confidence 356899999999999999999999987666556666667766777777778999999998653211 112245
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........+ ..+.. ...|+++|+||+|+...
T Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~l----~~~~~---~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 78 VTDIVILVVAADDGVMPQTVEAI----NHAKA---ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHH----HHHGG---GSCCEEEEEETTTSSCS
T ss_pred hCCEEEEEEECCCCCcHHHHHHH----HHHHh---CCCCEEEEEECccCCcC
Confidence 68999999999886544443332 22211 23599999999998763
No 22
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=157.43 Aligned_cols=121 Identities=21% Similarity=0.162 Sum_probs=84.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||...... .....+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 86 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--------ITSSYY 86 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT--------THHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh--------hHHHHH
Confidence 3579999999999999999999997766555566666666777777765 789999999754311 122335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
..+|++++|+|++++........+...+..... ...|+|+|+||+|+.+..
T Consensus 87 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 87 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTC
T ss_pred hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECccccccc
Confidence 669999999999875332233333333333321 235999999999986543
No 23
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=9.5e-18 Score=182.17 Aligned_cols=120 Identities=28% Similarity=0.288 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~~ 375 (596)
|+|+|+|.+|+|||||+|+|++... .+.+.+++|.+...+.+.+.+..+.+|||||+.......+...+ ..+...+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 7899999999999999999999765 36788899999988999987779999999998753222222333 345566788
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
||++++|+|++.+... ....+.++|...+ +|+|+|+||+|+.
T Consensus 82 ad~il~V~D~~~~~~~-~d~~i~~~l~~~~------~p~ilv~NK~D~~ 123 (439)
T 1mky_A 82 ADLVLFVVDGKRGITK-EDESLADFLRKST------VDTILVANKAENL 123 (439)
T ss_dssp CSEEEEEEETTTCCCH-HHHHHHHHHHHHT------CCEEEEEESCCSH
T ss_pred CCEEEEEEECCCCCCH-HHHHHHHHHHHcC------CCEEEEEeCCCCc
Confidence 9999999999876433 3345566776654 4999999999974
No 24
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=7.8e-18 Score=174.43 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~ 374 (596)
...|+|+|++|||||||+|+|++..+. +...+.+|.+.....+...+.++.++||||+.... ..+...+ ......+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~-~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM-DALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC-SHHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh-hHHHHHHHHHHHHHHh
Confidence 468999999999999999999998765 34556666665544444444499999999987531 1222223 23445567
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++... ....+.+.+.... ...|+|+|+||+|+.+.
T Consensus 86 ~ad~il~VvD~~~~~~~-~~~~i~~~l~~~~----~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTP-EDELVARALKPLV----GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp SCSEEEEEEETTSCCCH-HHHHHHHHHGGGT----TTSCEEEEEECGGGCSS
T ss_pred cCCEEEEEEECCCCCCh-HHHHHHHHHHhhc----CCCCEEEEEECcccCCc
Confidence 89999999999876433 3344445554431 13599999999998653
No 25
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=4.3e-18 Score=189.28 Aligned_cols=235 Identities=13% Similarity=0.053 Sum_probs=139.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcc----------------------cccccceecCeeEEEEECCceeEeeeccce
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFS----------------------DARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~----------------------~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
.++|+++|++|||||||+++|++..... +...+.|.......+.+.+..+.+|||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 4799999999999999999999642110 112344555555566666569999999999
Q ss_pred eeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-ccc
Q 007599 355 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEY 433 (596)
Q Consensus 355 i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~ 433 (596)
..+. ..+...+..+|.+++|+|++++. ..+...++..+...+ .|+|+|+||+|+....... .++
T Consensus 93 ~df~--------~~~~~~l~~aD~~IlVvDa~~g~-~~~t~~~~~~~~~~~------ipiivviNK~Dl~~~~~~~~~~~ 157 (529)
T 2h5e_A 93 EDFS--------EDTYRTLTAVDCCLMVIDAAKGV-EDRTRKLMEVTRLRD------TPILTFMNKLDRDIRDPMELLDE 157 (529)
T ss_dssp TTCC--------HHHHHGGGGCSEEEEEEETTTCS-CHHHHHHHHHHTTTT------CCEEEEEECTTSCCSCHHHHHHH
T ss_pred hhHH--------HHHHHHHHHCCEEEEEEeCCccc-hHHHHHHHHHHHHcC------CCEEEEEcCcCCccccHHHHHHH
Confidence 6542 12334456799999999998874 344444555544434 3899999999998754310 112
Q ss_pred cccccc-------cccccccccCCCccccccccccCCCCCCCCCCC-CCCccchhhhhhccccccchhhhccCCCCCCch
Q 007599 434 IDGDDI-------SNFSRAEDKDTTSEPVDVECIDNYGGDDADNND-GFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVE 505 (596)
Q Consensus 434 ~~~~~~-------~~~~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~ 505 (596)
+...+. -...++..+.|+.++.......+....+..... .+++...+.. +.+ .+ ++.+ .
T Consensus 158 i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~-------l~e-~~---~~~~--~ 224 (529)
T 2h5e_A 158 VENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPD-------LDA-AV---GEDL--A 224 (529)
T ss_dssp HHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHH-------HHH-HH---CHHH--H
T ss_pred HHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHH-------HHH-hh---CHHH--H
Confidence 111110 012467778899999777766653211111110 1111000000 100 00 1111 1
Q ss_pred hhhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 506 EEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 506 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
++|.++.++...+....+.+++..+.++| |+++||++|.||++||++|.+.+..
T Consensus 225 ~~~~e~~~l~~~~~~~~~~~~~~~~~~~P----v~~gSA~~~~Gv~~LLd~i~~~~P~ 278 (529)
T 2h5e_A 225 QQLRDELELVKGASNEFDKELFLAGEITP----VFFGTALGNFGVDHMLDGLVEWAPA 278 (529)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHTTSEEE----EEECBTTTTBSHHHHHHHHHHHSCS
T ss_pred HHhhcccchhhhhhhhhhHHHHHhCceeE----EEeeecccCCCHHHHHHHHHHhCCC
Confidence 33443333322233334567888888888 9999999999999999999998754
No 26
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=157.63 Aligned_cols=119 Identities=20% Similarity=0.169 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..++|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||....... ....+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 79 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--------TSTYY 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--------CGGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--------HHHHh
Confidence 4589999999999999999999998766555666666777777777764 7899999997543111 11224
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++.. ...+..++..+.. .....|+|+|+||+|+.+.
T Consensus 80 ~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 80 RGTHGVIVVYDVTSAES---FVNVKRWLHEINQ-NCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp TTCSEEEEEEETTCHHH---HHHHHHHHHHHHH-HCTTSEEEEEEECTTCGGG
T ss_pred ccCCEEEEEEECCCHHH---HHHHHHHHHHHHH-hCCCCCEEEEEECCCCchh
Confidence 56999999999987533 3333334433321 1123599999999997543
No 27
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.73 E-value=2.8e-18 Score=197.03 Aligned_cols=246 Identities=15% Similarity=0.103 Sum_probs=164.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC------------------CcccccccceecCeeEEEEECC------c-eeEeee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD------------------LFSDARLFATLDPRLKSVVLPS------G-KVLLSD 350 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~------------------v~~~~~~f~Tld~t~~~i~l~~------~-~i~liD 350 (596)
++++|+|+||.+||||||..+|+-.. ...+...+.|+..+.-++.|.+ . .++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 56899999999999999999996211 1134556778888878888763 2 789999
Q ss_pred ccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc
Q 007599 351 TVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD 430 (596)
Q Consensus 351 TpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~ 430 (596)
||||..+ .... ...+..+|.+++|||+..+ ...+++.+++.+...++ |.|+|+||+|+...+...
T Consensus 92 TPGHvDF-----~~Ev---~~aLr~~DgavlvVDaveG-V~~qT~~v~~~a~~~~l------p~i~~iNKiDr~~a~~~~ 156 (709)
T 4fn5_A 92 TPGHVDF-----TIEV---ERSLRVLDGAVVVFCGTSG-VEPQSETVWRQANKYGV------PRIVYVNKMDRQGANFLR 156 (709)
T ss_dssp CCSCTTC-----HHHH---HHHHHHCSEEEEEEETTTC-SCHHHHHHHHHHHHHTC------CEEEEEECSSSTTCCHHH
T ss_pred CCCCccc-----HHHH---HHHHHHhCeEEEEEECCCC-CchhHHHHHHHHHHcCC------CeEEEEccccccCccHHH
Confidence 9999865 2223 3344559999999999987 56778888888888887 899999999998765321
Q ss_pred -cccccccccc----ccc---cccccCCCccccccccccCCCCCC-CCCCCCCCccchhhhhhccccccchhhhccCCCC
Q 007599 431 -VEYIDGDDIS----NFS---RAEDKDTTSEPVDVECIDNYGGDD-ADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQ 501 (596)
Q Consensus 431 -~~~~~~~~~~----~~~---sa~~~~gi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~ 501 (596)
.+++...+.. ... ......|+.++.+...+.+.+... ........+.++.+.....+..+.+.+. +.++.
T Consensus 157 ~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~d~~ 235 (709)
T 4fn5_A 157 VVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAA-EANEE 235 (709)
T ss_dssp HHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHH-TSSHH
T ss_pred HHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHH-hccHH
Confidence 1222211111 111 122344555665555555433221 1122223445555555555666666554 55555
Q ss_pred CCchhhhhccccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 502 DNVEEEFWNAAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 502 l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
++ +.|++..+++..++...++.....+.++| ++++||.+|.|++.||++|-+.+-.
T Consensus 236 l~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~p----v~~gsa~~~~gv~~lLd~i~~~lPs 291 (709)
T 4fn5_A 236 LM--NKYLEEGELSEAEIKEGLRLRTLACEIVP----AVCGSSFKNKGVPLVLDAVIDYLPA 291 (709)
T ss_dssp HH--HHHHHHSCCCHHHHHHHHHHHHHTTSCEE----EEECBTTTTBTHHHHHHHHHHHSCC
T ss_pred HH--HHHHhcCCccHHHHHHHHHHhhhhceeee----eeeeecccCCchHHHHHHHHhhCCC
Confidence 55 78999999999999999999999999999 9999999999999999999987643
No 28
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=2.7e-17 Score=151.77 Aligned_cols=119 Identities=19% Similarity=0.099 Sum_probs=78.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++........+....+.....+.+.+. .+.+|||||+.... . .....+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--~------~~~~~~~ 77 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR--A------LAPMYYR 77 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG--G------GTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh--c------ccHhhCc
Confidence 478999999999999999999987643322222222233344555554 78999999985431 1 1223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........+...+...+. ...|+++|+||+|+.+.
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETFSTLKNWVRELRQHGP---PSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---TTSEEEEEEECTTCGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECCccccc
Confidence 79999999999876433333334444444332 23589999999998653
No 29
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=157.04 Aligned_cols=120 Identities=22% Similarity=0.197 Sum_probs=79.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+|+|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+.... .+ ....+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~~ 95 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR--AI------TSAYY 95 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC--TT------HHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh--hh------hHHHh
Confidence 3579999999999999999999987654333333233334445555544 78999999986431 11 12335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++. ....+..++..+........|+++|+||+|+...
T Consensus 96 ~~~d~vi~v~D~~~~~---s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQ---TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp TTCCEEEEEEETTCHH---HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred ccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 6799999999998753 2233334444442222234699999999998543
No 30
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.73 E-value=4.1e-17 Score=152.63 Aligned_cols=119 Identities=22% Similarity=0.108 Sum_probs=79.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+.... ......+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~ 83 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH--------SLAPMYYR 83 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG--------GGTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh--------hhhHHHhc
Confidence 478999999999999999999987654433333333444455566554 78999999975431 11233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........+...+.... ....|+++|+||+|+.+.
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 84 GAAAAIIVFDVTNQASFERAKKWVQELQAQG---NPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEECCccccc
Confidence 6999999999987533233233333333322 123589999999998654
No 31
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.73 E-value=2.6e-17 Score=153.51 Aligned_cols=123 Identities=20% Similarity=0.155 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+.++ .+.+|||||..... ......
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~ 78 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ--------SLGVAF 78 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------CC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh--------hhhHHH
Confidence 4589999999999999999999987655444444455666666666532 78999999975321 111223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHH-HHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v-~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+..+|++++|+|++++........+ ..+............|+++|+||+|+...
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred hhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 4569999999999875322222222 22233333222244699999999998643
No 32
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=1.1e-17 Score=169.75 Aligned_cols=122 Identities=25% Similarity=0.256 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
.++|+++|++|||||||+|+|+|........++.|.+.....+.+.+..+.++||||+....+....+...........+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 57999999999999999999999877677778888888888888877799999999998765544333333333333579
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
|++++|+|++.+ ..... +...+...+. .|+++|+||+|+...
T Consensus 83 d~vi~v~D~~~~--~~~~~-~~~~~~~~~~-----~p~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 83 DVIVDIVDSTCL--MRNLF-LTLELFEMEV-----KNIILVLNKFDLLKK 124 (271)
T ss_dssp SEEEEEEEGGGH--HHHHH-HHHHHHHTTC-----CSEEEEEECHHHHHH
T ss_pred cEEEEEecCCcc--hhhHH-HHHHHHhcCC-----CCEEEEEEChhcCcc
Confidence 999999999763 22222 2233334431 499999999998653
No 33
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.73 E-value=5.2e-17 Score=151.08 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++...........+.+.....+.+.+. .+.+|||||+.... ......+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR--------AVTRSYY 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC--------HHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh--------hhHHHHh
Confidence 3579999999999999999999987654333333233334445556554 78999999975431 1123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++........+...+.... ....|+++|+||+|+.+
T Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLT---NPNTVIILIGNKADLEA 134 (179)
T ss_dssp HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGG
T ss_pred ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEECccccc
Confidence 67999999999987533232222333333322 12359999999999854
No 34
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.73 E-value=1e-17 Score=171.15 Aligned_cols=119 Identities=20% Similarity=0.217 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
.++|+++|.+|||||||+|+|+|....+.+.+++|.+...+.+.. +..+.+|||||+.+..+....+.+.........+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 478999999999999999999998777788888888887766654 4489999999998764433222222222212359
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|+++. ... ..+...+.+.+ .|+|+|+||+|+..
T Consensus 82 d~vi~V~D~t~~--e~~-~~~~~~l~~~~------~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 82 DSILNVVDATNL--ERN-LYLTTQLIETG------IPVTIALNMIDVLD 121 (272)
T ss_dssp SEEEEEEEGGGH--HHH-HHHHHHHHHTC------SCEEEEEECHHHHH
T ss_pred CEEEEEecCCch--HhH-HHHHHHHHhcC------CCEEEEEEChhhCC
Confidence 999999999763 222 22333344444 49999999999754
No 35
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.72 E-value=3.9e-17 Score=151.05 Aligned_cols=120 Identities=17% Similarity=0.103 Sum_probs=71.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++...........+.+.....+.+.+. .+.+|||||+..... . . ....+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~----~--~~~~~~ 74 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG-W----L--QDHCLQ 74 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------------CHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch-h----h--hhhhhc
Confidence 478999999999999999999986654444445556666667777665 788999999864311 0 0 111234
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC-CcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV-SEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi-~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++.. ...+..++..+.. ......|+++|+||+|+.+.
T Consensus 75 ~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 75 TGDAFLIVFSVTDRRS---FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124 (169)
T ss_dssp HCSEEEEEEETTCHHH---HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG
T ss_pred cCCEEEEEEECCChHH---HHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc
Confidence 5999999999987532 2222233332211 11123599999999998643
No 36
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=3.2e-17 Score=177.83 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeeccch-hhHHHH--HHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL-QLVDAF--HATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~-~lv~af--~~tl~ 371 (596)
+.++|+++|++|+|||||+|+|++.... +.+.+++|.+.....+.+.+..+.+|||||+...... +..+.+ ..++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999998754 6777888888888888887779999999998543221 111222 23455
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+..+|++++|+|++++...+.. .+...+...+ .|+|+|+||+|+.+..
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~~------~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEAG------KAVVIVVNKWDAVDKD 302 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHTT------CEEEEEEECGGGSCCC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHcC------CcEEEEEECccCCCcc
Confidence 67789999999999987655443 3444444433 4899999999987643
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=157.09 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=77.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||.... .......+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~~ 97 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSITSAYYR 97 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH--------HHHHHHHhc
Confidence 478999999999999999999987654444444445555666777664 7899999997543 111233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~---~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYAS---EDAELLLVGNKLDCET 145 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccccc
Confidence 79999999999875433333333344444322 2359999999999854
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=1.2e-17 Score=155.38 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||..... . .....+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--~------~~~~~~~~ 86 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--S------LIPSYIRD 86 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG--G------GSHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH--H------HHHHHhcC
Confidence 68999999999999999999987655444455555666666777665 78999999975431 1 12233567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++.. ...+..++..+........|+++|+||+|+.+.
T Consensus 87 ~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 87 STVAVVVYDITNTNS---FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp CSEEEEEEETTCHHH---HHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred CCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 999999999987532 222233333321111123589999999998653
No 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=151.44 Aligned_cols=122 Identities=16% Similarity=0.046 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|++|+|||||+|+|++........ ....+.....+.+.+. .+.+|||||+...-...+ ....+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS------QESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHH------HHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhh------HHhhc
Confidence 34789999999999999999999976432211 1222333455666665 788999999864211111 11224
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+...+.... .....|+|+|+||+|+.+.
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTH--QADHVPIILVGNKADLARC 126 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--ccCCCCEEEEEEChhhccc
Confidence 56899999999987533333333333343331 1123599999999998654
No 40
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.72 E-value=4.9e-18 Score=159.72 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=59.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+.... ......+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 79 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYR 79 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------CCTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh--------hhHHHHHh
Confidence 478999999999999999999986544333444445555566667664 78999999985421 11122345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++.. ...+..++..+........|+++|+||+|+.+.
T Consensus 80 ~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 80 GAMGIMLVYDITNEKS---FDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp TCSEEEEEEETTCHHH---HHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred cCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 6999999999987532 233333333332111123599999999998653
No 41
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.72 E-value=1.9e-17 Score=152.73 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||...... .....+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 74 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT--------ITTAYYR 74 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC--------CCHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh--------hHHHHhc
Confidence 478999999999999999999987654444444444455556666554 789999999754311 1233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
.+|++++|+|++++........+...+.... ....|+++|+||+|+
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl 120 (170)
T 1g16_A 75 GAMGIILVYDITDERTFTNIKQWFKTVNEHA---NDEAQLLLVGNKSDM 120 (170)
T ss_dssp TEEEEEEEEETTCHHHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEECccC
Confidence 7999999999987533222222223333321 123599999999998
No 42
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.72 E-value=5.8e-18 Score=193.10 Aligned_cols=242 Identities=17% Similarity=0.111 Sum_probs=154.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc------------cc------cccceecCeeEEEEECCceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS------------DA------RLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~------------~~------~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
...+|+|+|++|||||||+++|++..... .+ ..+.|.......+.+.+..+.+|||||+..+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 45799999999999999999999532110 00 1234555555556555458999999999753
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-cccccc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDG 436 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~ 436 (596)
.......+..+|.+++|+|++++. ..+...++..+...++ |+|+|+||+|+. ..... .+.+..
T Consensus 88 --------~~~~~~~l~~ad~~ilVvD~~~g~-~~qt~~~~~~~~~~~i------p~ilv~NKiD~~-~~~~~~~~~l~~ 151 (665)
T 2dy1_A 88 --------VGEIRGALEAADAALVAVSAEAGV-QVGTERAWTVAERLGL------PRMVVVTKLDKG-GDYYALLEDLRS 151 (665)
T ss_dssp --------HHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHTTC------CEEEEEECGGGC-CCHHHHHHHHHH
T ss_pred --------HHHHHHHHhhcCcEEEEEcCCccc-chhHHHHHHHHHHccC------CEEEEecCCchh-hhHHHHHHHHHH
Confidence 122344556799999999998764 4455566666666554 899999999997 33110 111111
Q ss_pred ccc---cccc--cc-cccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhhc
Q 007599 437 DDI---SNFS--RA-EDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWN 510 (596)
Q Consensus 437 ~~~---~~~~--sa-~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~~ 510 (596)
.+. .... ++ ....|+.+++....+.+.. +. ......+.++.+.....+..+.+.+. +.|+.++ ++|++
T Consensus 152 ~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~r~~l~e~~~-~~d~~l~--e~~l~ 225 (665)
T 2dy1_A 152 TLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYEN--GE-EREAEVPPEERERVQRFRQEVLEAIV-ETDEGLL--EKYLE 225 (665)
T ss_dssp HHCSEEECEEEEEETTEEEEEEETTTTEEEEEET--TE-EEEECCCGGGHHHHHHHHHHHHHHHH-TTCHHHH--HHHHH
T ss_pred HhCCcceEEeeecCCCcccchhhhhhhheeecCC--Cc-eeEecCCHHHHHHHHHHHHHHHHHHH-hCCHHHH--HHHHC
Confidence 110 0011 11 1122233333333322211 10 01011233344444555566666543 5555555 88999
Q ss_pred cccCCCcccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 511 AAEDQQPESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+.+++..++...+++++..+.++| ++++||++|.||++||++|.+.+..
T Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~~p----v~~~SA~~~~Gv~~Ll~~i~~~lp~ 274 (665)
T 2dy1_A 226 GEEVTGEALEKAFHEAVRRGLLYP----VALASGEREIGVLPLLELILEALPS 274 (665)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSCEE----EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCeeE----EEEeecccCcCHHHHHHHHHHhCCC
Confidence 999999999999999999999988 9999999999999999999987654
No 43
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.72 E-value=3.8e-17 Score=150.48 Aligned_cols=118 Identities=18% Similarity=0.064 Sum_probs=75.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+.... . .....+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~------~~~~~~~ 77 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH--S------LAPMYYR 77 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--G------GHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh--h------hhHHhcc
Confidence 478999999999999999999986543322222223333345555554 78999999986431 1 1223356
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQRQAS---PNIVIALSGNKADLAN 125 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCcc
Confidence 79999999999875332222222222222221 2358999999999854
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.72 E-value=2.4e-17 Score=155.10 Aligned_cols=119 Identities=19% Similarity=0.104 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+... .......+
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 80 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF--------RSVTRSYY 80 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHTTS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHHHHHH
Confidence 3579999999999999999999987655555555555565666777664 7899999997542 11122335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++.. ...+..++..+........|+++|+||+|+.+
T Consensus 81 ~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 81 RGAAGALLVYDITSRET---YNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp TTCSEEEEEEETTCHHH---HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hcCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 67999999999987532 22233333332111113459999999999854
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=1.7e-17 Score=152.90 Aligned_cols=118 Identities=20% Similarity=0.135 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+.... . .....+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~------~~~~~~~~ 75 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA--S------LAPXYYRN 75 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--G------GHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh--h------hhhhhhcc
Confidence 68999999999999999999987654433333344444555666554 78999999975431 1 12233567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++........+...+.... ....|+++|+||+|+.+.
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 76 AQAALVVYDVTKPQSFIKARHWVKELHEQA---SKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CTTCEEEEEEECGGGGGS
T ss_pred CcEEEEEEecCChHHHHHHHHHHHHHHHhc---CCCCcEEEEEECCCcccc
Confidence 999999999987533322222222222221 123589999999998654
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.72 E-value=6.7e-17 Score=152.86 Aligned_cols=114 Identities=21% Similarity=0.126 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC--------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-------------------------------- 343 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~-------------------------------- 343 (596)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 468999999999999999999999764432222222223333333332
Q ss_pred -------ceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEE
Q 007599 344 -------GKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIE 416 (596)
Q Consensus 344 -------~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIv 416 (596)
..+.+|||||+..... .....+..+|++++|+|++++..... +..++..+... ...|+++
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~D~~~~~s~~~---~~~~~~~i~~~--~~~piil 152 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS--------IVPLYYRGATCAIVVFDISNSNTLDR---AKTWVNQLKIS--SNYIIIL 152 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT--------THHHHHTTCSEEEEEEETTCHHHHHH---HHHHHHHHHHH--SCCEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHH--------HHHHHhcCCCEEEEEEECCCHHHHHH---HHHHHHHHHhh--CCCcEEE
Confidence 3678999999764321 12334567999999999987633332 22333332110 1159999
Q ss_pred EEecCC
Q 007599 417 VWNKID 422 (596)
Q Consensus 417 VlNKiD 422 (596)
|+||+|
T Consensus 153 v~NK~D 158 (208)
T 3clv_A 153 VANKID 158 (208)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999999
No 47
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=3.9e-17 Score=153.52 Aligned_cols=118 Identities=20% Similarity=0.142 Sum_probs=75.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++... .....+++.+.....+.+.+. .+.+|||||+..... + ....+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~------~~~~~~ 74 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--M------RDQYMR 74 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT--T------HHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH--H------HHHHHh
Confidence 47899999999999999999998653 333334444444455556555 577899999764311 1 112345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++........+...+.... .....|+++|+||+|+..
T Consensus 75 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVK--DSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--TCSCCCEEEEEECTTSSS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEECccCcc
Confidence 5999999999987533333333333333321 122359999999999864
No 48
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=3.1e-17 Score=154.83 Aligned_cols=121 Identities=22% Similarity=0.257 Sum_probs=83.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
..++|+++|++|||||||+|+|++........++.|.+.....+.+.+..+.+|||||+....+......+.........
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 34799999999999999999999976666666777777777788776668999999998765332222222222222235
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|+++ .. ....+...+... ..|+|+|+||+|+..
T Consensus 86 ~~~~i~v~d~~~--~~-~~~~~~~~~~~~------~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 86 PDLVVNIVDATA--LE-RNLYLTLQLMEM------GANLLLALNKMDLAK 126 (188)
T ss_dssp CSEEEEEEEGGG--HH-HHHHHHHHHHTT------TCCEEEEEECHHHHH
T ss_pred CCEEEEEecchh--HH-HHHHHHHHHHhc------CCCEEEEEEhhhccc
Confidence 899999999864 22 222222223222 249999999999754
No 49
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=8.8e-17 Score=147.44 Aligned_cols=118 Identities=20% Similarity=0.150 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++.... .....++.......+.+.+. .+.+|||||+.... . .....+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~------~~~~~~~ 74 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--A------IRDNYFR 74 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH--H------HHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH--H------HHHHHhh
Confidence 478999999999999999999987542 23333333333444556554 78899999986431 1 1223345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|.+++|+|++++........+.. ++..... ...|+++|+||+|+.+.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 75 SGEGFLCVFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC---TTSCEEEEEECGGGGGG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECcccccc
Confidence 6999999999987532222222222 2222221 23599999999998543
No 50
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.72 E-value=1.1e-18 Score=198.03 Aligned_cols=219 Identities=16% Similarity=0.234 Sum_probs=148.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH---CCC-----C----------cccccccceecCeeEEEEECCceeEeeeccceeecc
Q 007599 297 LATVAVVGYTNAGKSTLVSALS---DSD-----L----------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDL 358 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLt---g~~-----v----------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l 358 (596)
+++|+|+||.+||||||..+|+ |.- + ..+...+.|+..+...+.+.+..++|+|||||..+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST-
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH-
Confidence 5689999999999999999996 210 0 11223466777777777787779999999999865
Q ss_pred chhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccccc-ccccccc
Q 007599 359 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMGD-VEYIDGD 437 (596)
Q Consensus 359 p~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~~-~~~~~~~ 437 (596)
...+...+..+|.+++|||+..+ ...++..+++.+...++ |.|+|+||+|+...+... .+++...
T Consensus 81 -------~~Ev~raL~~~DgavlVVDa~~G-V~~qT~~v~~~a~~~~l------p~i~~INKmDr~~a~~~~~~~~i~~~ 146 (638)
T 3j25_A 81 -------LAEVYRSLSVLDGAILLISAKDG-VQAQTRILFHALRKMGI------PTIFFINKIDQNGIDLSTVYQDIKEK 146 (638)
T ss_dssp -------HHHHHHHHTTCSEEECCEESSCT-TCSHHHHHHHHHHHHTC------SCEECCEECCSSSCCSHHHHHHHHHT
T ss_pred -------HHHHHHHHHHhCEEEEEEeCCCC-CcHHHHHHHHHHHHcCC------CeEEEEeccccccCCHHHHHHHHHHH
Confidence 22234456679999999999987 56777888899999887 789999999998766431 1111111
Q ss_pred cccccccccccCCCccccccccccCCCCCCCCCCCCCCccchhhhhhccccccchhhhccCCCCCCchhhhhccccCCCc
Q 007599 438 DISNFSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGESMNKNHNDYSDGWLLSGDEQDNVEEEFWNAAEDQQP 517 (596)
Q Consensus 438 ~~~~~~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~d~~l~~~~~y~~~~~~~~~ 517 (596)
+..... .....++ +... ... .+ ...+..+.+ .+.++.++ +.|+++..++..
T Consensus 147 l~~~~~----~~~~~~~--------~~~~--~~~-~~-----------~~~~~~e~~-~e~~d~l~--e~~~~~~~~~~~ 197 (638)
T 3j25_A 147 LSAEIV----IKQKVEL--------YPNV--CVT-NF-----------TESEQWDTV-IEGNDDLL--EKYMSGKSLEAL 197 (638)
T ss_dssp TCCCCC----CCCCCCS--------CGGG--CCC-CC-----------CCHHHHHHH-HHHHCHHH--HHHHHHCCCCSH
T ss_pred hCCCcc----ccceeEe--------eccc--ccc-cc-----------chhhhhhhh-hcccHHHH--hhhccCCccchH
Confidence 100000 0000011 0000 000 00 001111222 23344444 789999999999
Q ss_pred ccchhhhhhhcccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 518 ESTKDVCVMEKDSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 518 ~~~~~~~~~~~~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
+....+......+.++| ++++||.+|.||++||++|.+.+-.
T Consensus 198 ~~~~~~~~~~~~~~~~P----v~~gSa~~~~Gv~~LLd~i~~~~p~ 239 (638)
T 3j25_A 198 ELEQEESIRFQNCSLFP----LYHGSAKSNIGIDNLIEVITNKFYS 239 (638)
T ss_dssp HHHHHHHHHHHHTSCCC----CCCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred HHHHHHhhhhccccccc----ccccccccCCCchhHhhhhhccccC
Confidence 99999999999999998 9999999999999999999876543
No 51
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=1.6e-17 Score=153.60 Aligned_cols=119 Identities=17% Similarity=0.060 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+..... .....+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~ 77 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA--------LGPIYYR 77 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------------CCSST
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh--------hHHHHhc
Confidence 478999999999999999999987644333333333333445555544 788999999754210 1111245
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++.. ...+..++..+........|+++|+||+|+.+.
T Consensus 78 ~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 78 DSNGAILVYDITDEDS---FQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp TCSEEEEEEETTCHHH---HHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred cCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 6999999999987532 223333333322111123599999999998653
No 52
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.72 E-value=1.7e-16 Score=149.90 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeeccc-hhhHHHHH----H
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP-LQLVDAFH----A 368 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp-~~lv~af~----~ 368 (596)
...++|+++|++|||||||+|+|++.... .....+.|.... ....+..+.++||||+..... ......+. .
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSIN---FYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEE---EEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeE---EEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 35689999999999999999999997632 233333333322 122234789999999643211 11111222 2
Q ss_pred hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 369 TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 369 tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.+.....+|++++|+|++.+.. .....+..++...+. |+++|+||+|+.+...
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~-~~~~~~~~~~~~~~~------p~i~v~nK~Dl~~~~~ 150 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQ-DSDLMMVEWMKSLNI------PFTIVLTKMDKVKMSE 150 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHTTC------CEEEEEECGGGSCGGG
T ss_pred HHhcCcCceEEEEEecCCCCCC-HHHHHHHHHHHHcCC------CEEEEEEChhcCChHH
Confidence 2333344599999999987643 333455667777653 9999999999976543
No 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=5.5e-17 Score=151.58 Aligned_cols=120 Identities=20% Similarity=0.161 Sum_probs=75.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccc-cccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDA-RLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~-~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...+|+++|++|+|||||+|+|++....... .+..+.+.....+.+.+. .+.+|||||+.... ......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~ 80 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR--------SVTHAY 80 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH--------HHHHHH
Confidence 4579999999999999999999987653322 222233333344455554 78999999975421 112233
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+..+|++++|+|++++........+...+....- ...|+++|+||+|+.+.
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 81 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ---HDVALMLLGNKVDSAHE 131 (180)
T ss_dssp GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECCSTTSC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccCcc
Confidence 5679999999999875332222222233333221 23599999999998754
No 54
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.72 E-value=1.1e-16 Score=149.22 Aligned_cols=121 Identities=15% Similarity=0.064 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+.... ......+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR--------SLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH--------HHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh--------hhHHHHH
Confidence 3579999999999999999999987644333333334444556666664 78999999975421 1112234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHH-HcCCCcccCCcEEEEEecCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQ-QVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~-~lgi~~~~~~PiIvVlNKiDlv 424 (596)
..+|++++|+|++++........+...+. ..........|+++|+||+|+.
T Consensus 78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 78 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 56999999999987532222222222222 2222222346999999999986
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=4.8e-17 Score=156.59 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..+.|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+..... .....+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT--------ITTAYY 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC--------CCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------HHHHHh
Confidence 3589999999999999999999987655444455555555666777664 789999999754311 123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
..+|++++|+|++++........+...+.... ....|+++|+||+|+
T Consensus 91 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl 137 (213)
T 3cph_A 91 RGAMGIILVYDVTDERTFTNIKQWFKTVNEHA---NDEAQLLLVGNKSDM 137 (213)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT---TTCSEEEEEEECTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCC
Confidence 67999999999987533222222223333321 123599999999998
No 56
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.72 E-value=1.2e-16 Score=147.88 Aligned_cols=117 Identities=18% Similarity=0.164 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|.+|+|||||+|+|++..... ...|.......+.+.+..+.+|||||+..... + ....+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--~------~~~~~~~ 74 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP--Y------WRCYYSN 74 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEEEETTEEEEEEEECCCGGGGG--G------GGGGCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCccceEEEEECCEEEEEEECCCChhhhH--H------HHHHhcc
Confidence 45899999999999999999998765421 12344445556666655899999999854311 1 1122456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++...... ..++..+ ........|+++|+||+|+.+.
T Consensus 75 ~d~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 75 TDAVIYVVDSCDRDRIGIS---KSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp CSEEEEEEETTCCTTHHHH---HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCHHHHHHH---HHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999999887432222 2222222 2211234699999999998664
No 57
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.71 E-value=4.6e-17 Score=156.65 Aligned_cols=120 Identities=23% Similarity=0.171 Sum_probs=81.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+|+|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+..... .....+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 78 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT--------ITSSYY 78 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC--------CCGGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH--------HHHHhc
Confidence 3579999999999999999999987655444455555555566777665 789999999754311 112234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+...+.... ....|+++|+||+|+.+.
T Consensus 79 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA---TSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CTTCEEEEEEECTTCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccc
Confidence 56999999999987533333333333333322 123589999999998654
No 58
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.71 E-value=3.7e-17 Score=152.37 Aligned_cols=119 Identities=17% Similarity=0.049 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..++|+++|.+|+|||||+|+|++.... .....++.......+.+.+. .+.+|||||+.... .+. ...+
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--~~~------~~~~ 78 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG--AMR------EQYM 78 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTS--CCH------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhH--HHH------HHHH
Confidence 4579999999999999999999987432 23333333333345556554 78899999976431 111 1224
Q ss_pred HhcCEEEEEEeCCCCChHHHHHH-HHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTT-VLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~-v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........ +..++..... ...|+++|+||+|+.+.
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGG
T ss_pred hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc
Confidence 55999999999987532222222 2222233222 23599999999998543
No 59
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=9.9e-17 Score=151.77 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+..... + ....+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~------~~~~~~ 86 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--L------TPSYYR 86 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--S------HHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--h------hHHHhc
Confidence 478999999999999999999987654433333344444556666654 789999999854311 1 223356
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC-cccCCcEEEEEecCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~-~~~~~PiIvVlNKiDlv 424 (596)
.+|++++|+|++++. ....+..++..+... .....|+++|+||+|+.
T Consensus 87 ~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 87 GAQGVILVYDVTRRD---TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp TCCEEEEEEETTCHH---HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred cCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 799999999998752 233344555554321 12346999999999983
No 60
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=6.8e-17 Score=176.29 Aligned_cols=125 Identities=21% Similarity=0.295 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-CcccccccceecCeeEEEEECCceeEeeeccceeeccch-hhHHHH--HHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL-QLVDAF--HATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~-~lv~af--~~tl~ 371 (596)
..++|+++|.+|+|||||+|+|++.. ..+.+.+++|.+.....+.+.+..+.+|||||+...... ...+.+ ..++.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 56899999999999999999999876 456778888999888888887779999999997542110 011122 23455
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+..+|++++|+|++.+.. .+...+...+...+ .|+|+|+||+|+.+..
T Consensus 274 ~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~~~------~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGII-EQDKRIAGYAHEAG------KAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHTT------CEEEEEEECGGGSCCC
T ss_pred HHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHHcC------CCEEEEEEChhcCCCc
Confidence 6778999999999998744 44555666666654 4999999999987643
No 61
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.71 E-value=1.2e-16 Score=151.64 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC--cccccccceecCeeEEEEECCceeEeeeccceeec-cchhhHHHHHHh---
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL--FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD-LPLQLVDAFHAT--- 369 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v--~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~-lp~~lv~af~~t--- 369 (596)
+.++|+++|++|+|||||+|+|++... .....++.|..... ..+ ++.+.+|||||+... .+....+.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YII-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE--EEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEE--EEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 568999999999999999999998752 22333344443322 222 347999999997432 111112223222
Q ss_pred -HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 370 -LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 370 -l~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+.....+|++++|+|++++..... ..+..++...+ .|+++|+||+|+.+..
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~------~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYYG------IPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHTT------CCEEEEEECGGGSCGG
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHH-HHHHHHHHHcC------CCEEEEEECcccCChH
Confidence 222223499999999988644333 33455665543 4999999999997653
No 62
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.71 E-value=3.2e-17 Score=150.98 Aligned_cols=118 Identities=21% Similarity=0.131 Sum_probs=77.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||...... .....+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 76 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA--------ITKAYYR 76 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC--------CCHHHHT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH--------HHHHHhc
Confidence 478999999999999999999987544333333334455556666654 789999999754311 1223355
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++.... .+..++..+.... ...|+++|+||+|+.+.
T Consensus 77 ~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFE---AISSWREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp TCCEEEEEEETTCHHHHH---THHHHHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred CCCEEEEEEECcCHHHHH---HHHHHHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 799999999998753222 2222333221100 23599999999998643
No 63
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.71 E-value=6.7e-17 Score=153.54 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|.+|+|||||+|+|++....... ...|.......+.+.+..+.+|||||+..... .....+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 90 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN--------LWEHYYKE 90 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEECSSCEEEEEEECCSTTTGG--------GGGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEECCEEEEEEECCCCHHHHH--------HHHHHHhc
Confidence 3589999999999999999999987532222 23455555666666655999999999754311 11223466
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++...... ..+..++..... .....|+++|+||+|+.+
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRD 140 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCccc
Confidence 9999999999875322222 222233332221 002359999999999965
No 64
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=9.1e-17 Score=151.24 Aligned_cols=120 Identities=19% Similarity=0.125 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCe-eEEEEECC----------c-eeEeeeccceeeccchhhH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR-LKSVVLPS----------G-KVLLSDTVGFISDLPLQLV 363 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t-~~~i~l~~----------~-~i~liDTpG~i~~lp~~lv 363 (596)
...+|+|+|++|+|||||+|+|++........+..+.+.. ...+.+.+ . .+.++||||+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 83 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------ 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH------
Confidence 3579999999999999999999986543322222222222 23444443 2 7889999998542
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 364 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 364 ~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.......+..+|++++|+|++++........+...+..... ....|+++|+||+|+.+
T Consensus 84 --~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 84 --RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY--SENPDIVLCGNKSDLED 141 (195)
T ss_dssp --HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS--SSSCCEEEEEECTTCGG
T ss_pred --HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccc
Confidence 11123345679999999999875332222222222222211 12359999999999854
No 65
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.71 E-value=2e-17 Score=154.26 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=78.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...+|+++|.+|+|||||+|+|++........+..+.+.....+.+.++ .+.+|||||..... .+ ....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--~~------~~~~ 76 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG--KM------LDKY 76 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC--TT------HHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc--ch------hhHH
Confidence 4578999999999999999999986543322333334556667777762 78999999986431 11 1223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCC
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 425 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~ 425 (596)
+..+|++++|+|++++........+...+...... ....| +++|+||+|+.+
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEE-SETQPLVALVGNKIDLEH 129 (178)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHH-HTCCCEEEEEEECGGGGG
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc-cCCCCeEEEEEEcccccc
Confidence 56799999999998753322222222333222100 00135 899999999854
No 66
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.9e-16 Score=150.01 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|.+|+|||||+|+|++.... ....|.......+.+.+..+.+|||||+..... .....+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 83 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS--------SWNTYYTN 83 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE---EEECCSCSSCEEEEETTEEEEEEECCC----CG--------GGHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCCccceEEEEECCEEEEEEECCCCHhHHH--------HHHHHhcC
Confidence 3489999999999999999999976543 123345555667777655999999999864311 12233567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++...... ..++..+. .......|+++|+||+|+.+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVT---REELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp CCEEEEEEETTCTTTHHHH---HHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEeCCCHHHHHHH---HHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 9999999999887433322 22332221 11123469999999999865
No 67
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=2.8e-17 Score=178.32 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=74.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~~ 374 (596)
.++|+|+|++|+|||||+|+|++.... +.+.+++|.+.....+.+.+..+.+|||||+..... .+...+ ..+...+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE-PFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch-hHHHHHHHHHHHHHH
Confidence 378999999999999999999997643 567788888887777766656899999999963321 132333 33455677
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.||++++|+|++.+.... ...+.++|... .+|+|+|+||+|+..
T Consensus 82 ~ad~il~vvD~~~~~~~~-d~~~~~~l~~~------~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAA-DEEVAKILYRT------KKPVVLAVNKLDNTE 125 (436)
T ss_dssp HCSEEEEEEETTTCSCHH-HHHHHHHHTTC------CSCEEEEEECCCC--
T ss_pred hCCEEEEEEeCCCCCCHH-HHHHHHHHHHc------CCCEEEEEECccCcc
Confidence 899999999998875433 33454555432 359999999999864
No 68
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.71 E-value=1.3e-16 Score=152.89 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=78.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+|+|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+... .......+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 79 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY--------RTITTAYYR 79 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHTTGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------cchHHHhhc
Confidence 478999999999999999999997644332222233333445555554 7899999998543 111233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........+...+.... ....|+++|+||+|+.+.
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYS---WDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CSSCEEEEEEECTTCTTS
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCEEEEEECcccCcc
Confidence 7999999999987533222233333333322 123599999999998653
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.71 E-value=5.8e-17 Score=155.36 Aligned_cols=121 Identities=23% Similarity=0.204 Sum_probs=79.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+...... ....+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--------GVAFY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--------CCGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--------HHHHH
Confidence 4579999999999999999999987655444444445555556666554 7899999997543111 11224
Q ss_pred HhcCEEEEEEeCCCCChHHHHHH-HHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTT-VLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~-v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
..+|++++|+|++++........ +..++...........|+++|+||+|+.
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 56999999999987532222222 2222333222222346999999999986
No 70
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.70 E-value=1.1e-16 Score=157.46 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=81.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhh-HHHHHHhHHHH
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQL-VDAFHATLEEV 373 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~l-v~af~~tl~e~ 373 (596)
...++|+|+|.+|+|||||+|+|++.........++|.+.....+.+.+..+.+|||||+........ ...+.......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 35689999999999999999999998765556667777776666666555899999999953211110 00011111224
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
..+|++++|+|++++.... ......++..+.-. ....|+|+|+||+|+.+...
T Consensus 107 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~ 159 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLT-IKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDS 159 (228)
T ss_dssp TSSEEEEEEEETTCTTSSC-HHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--C
T ss_pred ccccEEEEEEecccccCcc-hHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchh
Confidence 5689999999998764322 11122333333211 11359999999999976433
No 71
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.70 E-value=1.1e-16 Score=146.63 Aligned_cols=116 Identities=17% Similarity=0.097 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||+|+|++...... ...++.+.....+.+.+. .+.++||||+.... . .....+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~------~~~~~~~~ 74 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA--S------MRDLYIKN 74 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--H------HHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCccc-CCCCcceeEEEEEEECCEEEEEEEEECCCchhhH--H------HHHHHhcc
Confidence 6899999999999999999998654322 222222333445555554 58899999975431 1 11223556
Q ss_pred cCEEEEEEeCCCCChHHHHHHHH-HHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVL-QVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~-~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|.+++|+|++++.......... .++..... ...|+++|+||+|+.+
T Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLES 122 (167)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGG
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECCcccc
Confidence 99999999998753322222222 23332221 2359999999999854
No 72
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.3e-17 Score=154.59 Aligned_cols=120 Identities=18% Similarity=0.118 Sum_probs=79.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+|+|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||.... .......+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~ 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY--------RTITTAYY 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC--------HHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH--------HHHHHHHH
Confidence 3579999999999999999999986543333222233344445555544 7999999997432 11233445
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+...+..... ...|+|+|+||+|+.+.
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSW---DNAQVILVGNKCDMEEE 143 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGG
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccc
Confidence 679999999999875333333333344433321 23599999999998543
No 73
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=1.4e-16 Score=146.97 Aligned_cols=116 Identities=18% Similarity=0.090 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCccc-ccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSD-ARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~-~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
.+|+++|.+|+|||||+|+|++...... ...+.|. ...+.+.+. .+.+|||||+.... . .....+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~--~------~~~~~~~ 71 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGR--W------LPGHCMA 71 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEE---EEEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccce---EEEEEECCEEEEEEEEECCCCccch--h------hhhhhhh
Confidence 6899999999999999999998654322 2222222 234445554 78899999986431 1 1122345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........+...+.... .....|+++|+||+|+.+.
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 72 MGDAYVIVYSVTDKGSFEKASELRVQLRRAR--QTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp -CCEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSS
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEeccccccc
Confidence 6999999999987533233332323332221 1234699999999998754
No 74
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.70 E-value=1.6e-16 Score=150.02 Aligned_cols=117 Identities=20% Similarity=0.140 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|++|+|||||+|+|++.. .. ....|.......+.+.+..+.+|||||+.... ......+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~--~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~~ 85 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VD--TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR--------SYWRNYFES 85 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CS--SCCCCSSEEEEEEEETTEEEEEEEECCSHHHH--------TTGGGGCTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CC--cccccCccceEEEEECCEEEEEEECCCCHhHH--------HHHHHHhcC
Confidence 35899999999999999999999876 21 22234445556666655589999999985321 111223456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++..... +..++..+ ........|+++|+||+|+.+.
T Consensus 86 ~d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 86 TDGLIWVVDSADRQRMQD---CQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp CSEEEEEEETTCGGGHHH---HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECcCHHHHHH---HHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 999999999987643222 22233322 2111234699999999998654
No 75
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.70 E-value=1.4e-16 Score=146.54 Aligned_cols=117 Identities=21% Similarity=0.116 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||+|+|++...... ...++.......+.+.+. .+.+|||||+.... .+ ....+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~~------~~~~~~~ 74 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT--AM------RDLYMKN 74 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCS-CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST--TH------HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccceEEEEEEECCEEEEEEEEECCChHHHH--HH------HHHHhcc
Confidence 6899999999999999999998654322 222222222233444443 78899999986532 11 1223456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++........+.. ++..... ...|+++|+||+|+.+.
T Consensus 75 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE 123 (167)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECcccccc
Confidence 999999999987532222222222 2222221 23599999999998643
No 76
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=151.85 Aligned_cols=120 Identities=21% Similarity=0.169 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..++|+|+|++|+|||||+|+|++... .....+++.+.....+.+.+. .+.+|||||+.... . .....+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~------~~~~~~ 83 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--A------IRDNYF 83 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--H------HHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH--H------HHHHHH
Confidence 458999999999999999999998753 333344444444455666654 78899999986431 1 122334
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+...+.... .....|+++|+||+|+.+.
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 84 RSGEGFLCVFSITEMESFAATADFREQILRVK--EDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--TCSCCCEEEEEECTTCGGG
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEeccCcccc
Confidence 56999999999987532222222222222221 1123599999999998553
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.70 E-value=1.5e-16 Score=154.28 Aligned_cols=119 Identities=21% Similarity=0.168 Sum_probs=79.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC-----------c-eeEeeeccceeeccchhhH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-----------G-KVLLSDTVGFISDLPLQLV 363 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~-----------~-~i~liDTpG~i~~lp~~lv 363 (596)
...+|+|+|.+|+|||||+|+|++........+..+.+.....+.+.+ . .+.+|||||+..+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~------ 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF------ 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH------
Confidence 357999999999999999999998754332222222333334444443 2 6899999997432
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcc-cCCcEEEEEecCCCCC
Q 007599 364 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEE-KLKNMIEVWNKIDYHD 425 (596)
Q Consensus 364 ~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~-~~~PiIvVlNKiDlv~ 425 (596)
.......+..+|++++|+|++++ .....+..++..+..... ...|+|+|+||+|+.+
T Consensus 98 --~~~~~~~~~~~d~iilV~D~~~~---~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 98 --RSLTTAFFRDAMGFLLMFDLTSQ---QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp --HHHHHHHHTTCCEEEEEEETTCH---HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred --HhHHHHHhcCCCEEEEEEECcCH---HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 11233456779999999999864 334455566766543221 3469999999999854
No 78
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=153.25 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+.... ......+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~ 98 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR--------SIAKSYF 98 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH--------HHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh--------hhHHHHH
Confidence 3589999999999999999999987543322233333444556666664 68999999985431 1123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 99 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH---ETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHH
T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCCEEEEEECccccc
Confidence 669999999999875333333333333333321 2359999999999864
No 79
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=2.2e-16 Score=147.88 Aligned_cols=118 Identities=21% Similarity=0.164 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++... ......++.......+.+.+. .+.+|||||+.... . .....+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~------~~~~~~~ 88 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--A------IRDNYFR 88 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--H------HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH--H------HHHHHhc
Confidence 47899999999999999999998653 233333443444445556554 78899999986431 1 1223345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHH-HHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTV-LQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v-~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........+ ..++.... ....|+++|+||+|+.+.
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 89 SGEGFLCVFSITEMESFAATADFREQILRVKE---DENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC---CTTCCEEEEEECGGGGGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc
Confidence 69999999999875322222222 22222222 123599999999998543
No 80
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.2e-16 Score=152.43 Aligned_cols=118 Identities=21% Similarity=0.093 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++........+....+.....+.+.+. .+.+|||||..... . .....+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~------~~~~~~~ 94 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH--S------LAPMYYR 94 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG--G------GTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH--h------hhHHhhc
Confidence 478999999999999999999987543222211112222334444443 78999999975431 1 1223456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++........+...+..... ...|+++|+||+|+.+
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGP---ENIVMAIAGNKCDLSD 142 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGG
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECccccc
Confidence 79999999999886433333333333433321 2359999999999854
No 81
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.70 E-value=7.4e-17 Score=153.56 Aligned_cols=118 Identities=20% Similarity=0.123 Sum_probs=77.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+..... .....+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 92 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS--------ITRSYYR 92 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC--------CCHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh--------hHHHHhc
Confidence 478999999999999999999987654444444445555566677664 789999999754311 1233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++... ..+..++..+........|+++|+||+|+.+
T Consensus 93 ~~d~ii~v~d~~~~~s~---~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 93 GAAGALLVYDITRRETF---NHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp TCSEEEEEEETTCHHHH---HTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred cCCEEEEEEECCCHHHH---HHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 79999999999875322 2233333333211112359999999999854
No 82
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=8e-17 Score=150.72 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++..... ...++.+.....+.+.+. .+.+|||||+... ..+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------~~~ 70 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-------------KFS 70 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH-------------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCchh-------------HHH
Confidence 34789999999999999999999875432 222222233445566554 6889999998641 124
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++........+.+++..+........|+++|+||+|+.+
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 122 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 5599999999998764434444433345544322223469999999999854
No 83
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=5.5e-17 Score=152.24 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|++|||||||+|+|++... .....|.......+.+.+..+.+|||||+...... ....+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 85 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV---VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPY--------WRCYYAD 85 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE---EEECSSTTCCEEEEEETTEEEEEEEEC----CCTT--------GGGTTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc---CccCCcCccceEEEEECCEEEEEEECCCCHhHHHH--------HHHHhcc
Confidence 458999999999999999999997543 11223444445566665558999999998653211 1122456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCC-CcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV-SEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi-~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++..... +..++..+-. ......|+++|+||+|+.+.
T Consensus 86 ~d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRMST---ASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEETTCTTTHHH---HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCHHHHHH---HHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 999999999987643222 2333433321 11234699999999998653
No 84
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=1.2e-16 Score=173.51 Aligned_cols=124 Identities=26% Similarity=0.355 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchh--hHHHH--HHhH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQ--LVDAF--HATL 370 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~--lv~af--~~tl 370 (596)
+.++|+|+|++|||||||+|+|+|... .+.+.+++|.++..+.+.+.+..+.++||||+....... ..+.+ ..+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 468999999999999999999999764 467788889999888998877799999999985432110 00111 1234
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 371 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 371 ~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+..+|++++|+|++.+.... ...+...+...+ .|+|+|+||+|+.+.
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~-~~~i~~~l~~~~------~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQ-DQRMAGLMERRG------RASVVVFNKWDLVVH 307 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHTT------CEEEEEEECGGGSTT
T ss_pred HHHhhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcC------CCEEEEEECccCCCc
Confidence 5667799999999998764433 344556666655 389999999998754
No 85
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.70 E-value=1.3e-16 Score=151.73 Aligned_cols=122 Identities=16% Similarity=0.078 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
..++|+|+|.+|+|||||+|+|++........ ..|.......+...+..+.+|||||+..... + ....+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~------~~~~~~~ 86 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI-TATVGYNVETFEKGRVAFTVFDMGGAKKFRG--L------WETYYDN 86 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CC-CCCSSEEEEEEEETTEEEEEEEECCSGGGGG--G------GGGGCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccc-ccccceeEEEEEeCCEEEEEEECCCCHhHHH--H------HHHHHhc
Confidence 46899999999999999999999976543111 2234444445554444899999999864311 1 1122456
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCC----CcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGV----SEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi----~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++...... ..+..++....+ ......|+|+|+||+|+...
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 9999999999986432222 222222221110 00014599999999998764
No 86
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=9.4e-17 Score=155.71 Aligned_cols=118 Identities=21% Similarity=0.175 Sum_probs=79.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||...+ .......+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~~ 97 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF--------RSITQSYYR 97 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHGGGST
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHHh
Confidence 479999999999999999999987654444444445555566667664 7899999997542 111223356
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++........+...+.... ....|+|+|+||+|+.+
T Consensus 98 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 98 SANALILTYDITCEESFRCLPEWLREIEQYA---SNKVITVLVGNKIDLAE 145 (201)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---CTTCEEEEEEECGGGGG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCcc
Confidence 7999999999987532222222223333322 12358999999999854
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.70 E-value=2.5e-16 Score=144.89 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+|+++|++|+|||||+|+|++..... . ..|.......+...+..+.+|||||+... .......+..+|+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~~d~ 70 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNISFTVWDVGGQDKI--------RPLWRHYFQNTQG 70 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-C--CCCSSCCEEEEECSSCEEEEEECCCCGGG--------HHHHHHHTTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-c--cCcCceeEEEEEECCEEEEEEEcCCChhh--------HHHHHHHhccCCE
Confidence 68999999999999999998765332 1 22444445555554448999999998542 1112234567999
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 379 LVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 379 iL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+++|+|++++.... .+..++..+ ........|+++|+||+|+.+.
T Consensus 71 ~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 71 LIFVVDSNDRERVN---EAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp EEEEEETTCGGGHH---HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHH---HHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 99999998763322 223333332 2112234699999999998653
No 88
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.69 E-value=8.1e-17 Score=152.83 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++...........+.+.....+...+. .+.+|||||+...... ....+
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 92 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--------TTAYY 92 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--------GGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--------HHHhc
Confidence 3579999999999999999999987644332222233333445555554 7899999997543111 12234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++........+...+.... ....|+++|+||+|+.+
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYS---WDNAQVILVGNKCDLED 141 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGG
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCEEEEEECccccc
Confidence 56999999999987533222233333333332 12359999999999854
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.69 E-value=4.3e-16 Score=147.59 Aligned_cols=117 Identities=22% Similarity=0.157 Sum_probs=77.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|++|||||||+|+|++.... ....|.......+.+.+..+.+|||||+.... ......+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~---~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 83 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR--------PYWRSYFEN 83 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE---EEEEETTEEEEEEEETTEEEEEEECSSCGGGH--------HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC---cccCcCCeEEEEEEECCEEEEEEECCCCHHHH--------HHHHHHhCC
Confidence 4589999999999999999999986431 11223333344566654489999999985431 112334567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++.... .+..++..+ ........|+++|+||+|+.+.
T Consensus 84 ~~~~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFE---ETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp CSEEEEEEETTCGGGHH---HHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECcCHHHHH---HHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 99999999998753322 222333332 2112234699999999998654
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.69 E-value=2.6e-16 Score=149.57 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+|+|.+|+|||||+|+|++...... ...|.......+...+..+.+|||||+.... ......+..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ 90 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNED--MIPTVGFNMRKITKGNVTIKLWDIGGQPRFR--------SMWERYCRG 90 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEETTEEEEEEEECCSHHHH--------TTHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCc--cCCCCceeEEEEEeCCEEEEEEECCCCHhHH--------HHHHHHHcc
Confidence 357899999999999999999998654322 1234444444555544489999999985321 112233567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++.... .+..++..+ ........|+++|+||+|+...
T Consensus 91 ~d~ii~v~D~~~~~s~~---~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIE---ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp CSEEEEEEETTCGGGHH---HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCHHHHH---HHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 99999999998753322 222333332 1111234699999999998653
No 91
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.5e-16 Score=146.70 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCee-EEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL-KSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~-~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..+|+++|++|+|||||+|+|++....... ..|..... ..+...+. .+.+|||||+.... ......+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY--IPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------AMQRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC--CCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccccEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHhc
Confidence 368999999999999999999986533211 11222222 23334443 68999999986431 1122234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+...+..... .....|+++|+||+|+.+.
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGG
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccc
Confidence 569999999999875333333333333433311 1123599999999998553
No 92
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.69 E-value=3.5e-16 Score=142.87 Aligned_cols=117 Identities=20% Similarity=0.132 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|++|+|||||+|+|++..... ....++.+.....+.+.+. .+.++||||+.... .+ ....+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~------~~~~~~~ 74 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--AM------RDQYMRT 74 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC--HH------HHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEEEEEEECCEEEEEEEEECCCchhhh--HH------HHHhhcc
Confidence 579999999999999999999865332 2222222223344555554 67899999986431 11 1123456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|.+++|+|++++........+...+.... .....|+++|+||+|+.+
T Consensus 75 ~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~--~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVK--DSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHH--TCSCCCEEEEEECTTCSC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEEEchhhhh
Confidence 999999999987533222222223232221 112359999999999866
No 93
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=156.06 Aligned_cols=119 Identities=19% Similarity=0.094 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+.... ......+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~ 95 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR--------SVTRSYY 95 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHS--------CCCHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH--------HHHHHHh
Confidence 3579999999999999999999987654444444455555566667664 78999999974321 1123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++.. ...+..++..+........|+++|+||+|+..
T Consensus 96 ~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 96 RGAAGALLVYDITSRET---YNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp TTCSEEEEEEETTCHHH---HHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred ccCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 67999999999987532 22333333333111112359999999999854
No 94
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=151.96 Aligned_cols=118 Identities=18% Similarity=0.118 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+..+ .......+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~ 100 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF--------RTITQSYYR 100 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG--------HHHHHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH--------HHHHHHHHh
Confidence 478999999999999999999987543322222223444556666654 7899999998543 111233456
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++.. ...+..++..+........|+|+|+||+|+.+
T Consensus 101 ~~d~iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 101 SANGAILAYDITKRSS---FLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp TCSEEEEEEETTBHHH---HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 7999999999987532 22233333332111113359999999999854
No 95
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.69 E-value=8.7e-17 Score=176.91 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=81.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-------CcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHA 368 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~ 368 (596)
..++|+++|++|+|||||+|+|++.. ...+...+.|++.....+.+++..+.++||||+..+ ...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~--------~~~ 89 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL--------IRA 89 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH--------HHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH--------HHH
Confidence 35799999999999999999999876 234455677888777777776669999999998532 234
Q ss_pred hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 369 TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 369 tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+...+..+|++++|+|++++...+.. ....++..+++ |.|+|+||+|+.+.
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~~i------p~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGPKTQTG-EHMLILDHFNI------PIIVVITKSDNAGT 140 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHH-HHHHHHHHTTC------CBCEEEECTTSSCH
T ss_pred HHHHHhhCCEEEEEEecCCCccHHHH-HHHHHHHHcCC------CEEEEEECCCcccc
Confidence 55667789999999999886444443 34456777665 77999999999764
No 96
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.68 E-value=8.7e-17 Score=174.86 Aligned_cols=118 Identities=20% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc-------------------------------ccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF-------------------------------SDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~-------------------------------~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|++|+|||||+|+|++.... .+...+.|.+.....+...+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 5689999999999999999999654211 112245677777777777666
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChH------HHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE------EHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~------~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.++||||+..+ ...+...+..+|++++|+|++++..+ .+.......+..+++ .++|+|+
T Consensus 96 ~~~iiDTPGh~~f--------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v-----~~iIvvi 162 (439)
T 3j2k_7 96 HFTILDAPGHKSF--------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV-----KHLIVLI 162 (439)
T ss_pred EEEEEECCChHHH--------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCC-----CeEEEEe
Confidence 9999999999643 33455566779999999999987432 244444456666665 2389999
Q ss_pred ecCCCCCc
Q 007599 419 NKIDYHDE 426 (596)
Q Consensus 419 NKiDlv~~ 426 (596)
||+|+...
T Consensus 163 NK~Dl~~~ 170 (439)
T 3j2k_7 163 NKMDDPTV 170 (439)
T ss_pred ecCCCccc
Confidence 99999653
No 97
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.68 E-value=4e-16 Score=146.58 Aligned_cols=119 Identities=21% Similarity=0.110 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++..... ....++.......+.+.+. .+.+|||||..... .+ ....+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~~------~~~~~ 87 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVD-DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS--AM------REQYM 87 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC--SS------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH--HH------HHHHH
Confidence 45799999999999999999999864332 2222332333445555554 56679999975431 11 12234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHH-HHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVL-QQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL-~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+...+ .... ....|+|+|+||+|+.+.
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 88 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD---RESFPMILVANKVDLMHL 138 (183)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT---SSCCCEEEEEECTTCSTT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEECCCchhc
Confidence 5699999999998753222222222222 2222 123599999999998653
No 98
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=2e-16 Score=170.20 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCeeEEEEE---------------C--C------ceeEe
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVL---------------P--S------GKVLL 348 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t~~~i~l---------------~--~------~~i~l 348 (596)
+...+|+++|+.|+|||||+++|+|... ..+...+.|++.......+ + + ..+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3568999999999999999999997542 2223345566554333222 1 1 36899
Q ss_pred eeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 349 SDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 349 iDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
|||||+..+ .......+..+|++++|+|++++....+.......+..++. +|+|+|+||+|+.+.+
T Consensus 86 iDtPGh~~f--------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~-----~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 86 VDSPGHETL--------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGI-----DKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EECSSHHHH--------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTC-----CCEEEEEECTTSSCTT
T ss_pred EECCCHHHH--------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCC-----CeEEEEEEccCCCCHH
Confidence 999998532 22334445568999999999986422333333345666664 4799999999997654
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.68 E-value=4.1e-16 Score=149.30 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=74.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|++|+|||||+|+|++..... . ..|.......+.+.+..+.+|||||+..... .....+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 96 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNICFTVWDVGGQDKIRP--------LWRHYFQN 96 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE-E--EEETTEEEEEEEETTEEEEEEECC-----CT--------THHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc-c--CCcCceeEEEEEECCEEEEEEECCCCHhHHH--------HHHHHhcc
Confidence 45899999999999999999998765331 1 2344444455665444899999999854311 11223467
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++.... .+..++..+ ........|+++|+||+|+.+.
T Consensus 97 ~d~iilv~D~~~~~s~~---~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQ---ESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp CCEEEEEEETTCGGGHH---HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCHHHHH---HHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 99999999998763222 223333332 2122234699999999998653
No 100
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.67 E-value=4.4e-16 Score=147.40 Aligned_cols=118 Identities=19% Similarity=0.100 Sum_probs=72.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++.... .....++.......+.+.+. .+.+|||||..... ......+.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 91 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------AMRDQYMR 91 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------CT
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEEEEEEEEECCChHHHH--------HHHHHhhC
Confidence 478999999999999999999986532 22233333333345555554 68899999975321 11223355
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|++++|+|++++........+...+..... ....|+++|+||+|+..
T Consensus 92 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 92 TGEGFLCVFAINNSKSFADINLYREQIKRVKD--SDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT--CSCCCEEEEEECTTCSC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECCcCCc
Confidence 69999999999875332333333333332211 12359999999999865
No 101
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.67 E-value=1.9e-16 Score=170.06 Aligned_cols=120 Identities=24% Similarity=0.226 Sum_probs=79.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc-cccccce--------------ecCeeEEEEEC-----CceeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFAT--------------LDPRLKSVVLP-----SGKVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~f~T--------------ld~t~~~i~l~-----~~~i~liDTpG~i 355 (596)
...+|+++|++|+|||||+|+|++..... ......| .+.......+. ...+.++||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 56899999999999999999999853211 0000111 01000000000 1268899999986
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.+ ...+...+..+|++++|+|++++....+.......+..++. +|+|+|+||+|+++.+.
T Consensus 87 ~~--------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-----~~iivviNK~Dl~~~~~ 146 (403)
T 3sjy_A 87 VL--------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-----KNLIIVQNKVDVVSKEE 146 (403)
T ss_dssp GG--------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHHH
T ss_pred HH--------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-----CCEEEEEECccccchHH
Confidence 43 33455667789999999999987534555555567777775 48999999999976543
No 102
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.67 E-value=2.1e-16 Score=170.04 Aligned_cols=119 Identities=24% Similarity=0.264 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC---cccccccceecCeeEEEEEC-----------------C------ceeEee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL---FSDARLFATLDPRLKSVVLP-----------------S------GKVLLS 349 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v---~~~~~~f~Tld~t~~~i~l~-----------------~------~~i~li 349 (596)
...+|+++|++|+|||||+++|+|... ..+...+.|++.......+. + ..+.++
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 457999999999999999999997542 22333455666554433331 1 368999
Q ss_pred eccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 350 DTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 350 DTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
||||+..+ .......+..+|++++|+|++++....+.......+..++. .|+|+|+||+|+.+.+
T Consensus 89 DtPGh~~f--------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~-----~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 89 DAPGHEAL--------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQ-----KNIIIAQNKIELVDKE 153 (410)
T ss_dssp ECSSHHHH--------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHH
T ss_pred ECCChHHH--------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCC-----CcEEEEEECccCCCHH
Confidence 99998532 23345556678999999999986423333333456666665 4799999999997653
No 103
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.67 E-value=3.3e-16 Score=148.58 Aligned_cols=121 Identities=20% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||..... . ......+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~------~~~~~~~ 91 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR-K------SMVQHYY 91 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH-T------TTHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh-h------hhhHHHh
Confidence 4579999999999999999999987654444444444555566667664 78999999974320 0 1122335
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+.. ++..+. ....|+++|+||+|+.+.
T Consensus 92 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 92 RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL---ANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC---CSCCCEEEEEECTTCGGG
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc
Confidence 67999999999987532222222222 222221 223599999999998543
No 104
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.67 E-value=1.2e-16 Score=155.14 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=72.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc---eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...+|+++|.+|||||||+|+|++...........+.......+...++ .+.+|||||+..... .....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~ 81 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV--------LKDVY 81 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC--------CCHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch--------HHHHH
Confidence 3479999999999999999999986533211111111111122222222 588999999864321 11223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+..+|++++|+|++++........+...+.... ....|+++|+||+|+.+.
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVV---GNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSSSCEEEEEECTTCC--
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCEEEEEECCCCccc
Confidence 456999999999987533333333323333321 123599999999998654
No 105
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.6e-16 Score=147.92 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCee-EEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRL-KSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~-~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
....|+++|.+|||||||+|+|++....... ..|..... ..+...+. .+.+|||||+.... ......
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--IPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP--------AMQRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--SCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------HHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--cCccccceeEEEEECCEEEEEEEEeCCChHHhH--------HHHHHh
Confidence 4589999999999999999999986532211 12222222 22334443 78999999986431 112223
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+..+|++++|+|++++........++..+..+.-. ....|+|+|+||+|+..
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS-VEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC-GGGSCEEEEEECTTCSS
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCCc
Confidence 45699999999998753333333334444443211 12359999999999864
No 106
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=1.2e-16 Score=174.30 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHH-HHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAF-HATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af-~~tl~e~ 373 (596)
+.|+|+|+|.+|+|||||+|+|++... .+.+.+++|.+.....+.+.+..+.+|||||+... ...+.+.+ ..+...+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG-DEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc-chHHHHHHHHHHHhhH
Confidence 458999999999999999999999764 35667788888777666665559999999998632 12222333 3345566
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|+..+.. .....+.++|...+ +|+|+|+||+|+..
T Consensus 101 ~~ad~il~VvD~~~~~~-~~d~~l~~~l~~~~------~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVT-AADEEVAKILYRTK------KPVVLAVNKLDNTE 145 (456)
T ss_dssp HHCSEEEEEEESSSCSC-HHHHHHHHHHTTCC------SCEEEEEECC----
T ss_pred hhCCEEEEEEeCCCCCC-hHHHHHHHHHHHcC------CCEEEEEECccchh
Confidence 78999999999987643 33445556665433 59999999999864
No 107
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.67 E-value=5.2e-16 Score=149.32 Aligned_cols=121 Identities=19% Similarity=0.107 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++........+.++.+.....+.+.+. .+.+|||+|..... ..+ ....+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-~~~------~~~~~ 94 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-GWL------RDHCL 94 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG-HHH------HHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch-hhh------HHHhh
Confidence 4589999999999999999999875433333444555555566667665 67889999986431 111 11224
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC-CcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV-SEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi-~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++.. ...+..++..+.. ......|+|+|+||+|+.+.
T Consensus 95 ~~~d~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRS---FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp HHCSEEEEEEETTCHHH---HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred ccCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 56999999999987532 2223333333211 01123599999999998653
No 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.67 E-value=3.6e-16 Score=147.53 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|.+|+|||||+|+|++... .....|.......+.+.+..+.+|||||+...... ....+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~ 88 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSS--------WNTYYTN 88 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCG--------GGGGGTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHH--------HHHHhcc
Confidence 357999999999999999999998764 22233444455667775559999999998543111 1223456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCC
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~ 425 (596)
+|++++|+|++++...... ..++..+ ........|+++|+||+|+.+
T Consensus 89 ~d~ii~v~D~~~~~s~~~~---~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVT---REELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp CCEEEEEEETTCTTTHHHH---HHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEECCCHHHHHHH---HHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 9999999999886433322 2222222 111123469999999999865
No 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.67 E-value=2.9e-16 Score=148.76 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+++|++|+|||||+|+|.+..... . ..|.......+.+.+..+.+|||||+...... ....+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~~~~ 89 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-T--VPTVGVNLETLQYKNISFEVWDLGGQTGVRPY--------WRCYFSD 89 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-E--CSSTTCCEEEEEETTEEEEEEEECCSSSSCCC--------CSSSSTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-c--CCCCceEEEEEEECCEEEEEEECCCCHhHHHH--------HHHHhhc
Confidence 45899999999999999999998765322 1 22444555666666559999999998543111 1112346
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++...... ..+..++. .......|+++|+||+|+.+.
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLD---EDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHT---CSTTTTCEEEEEEECTTSTTC
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHh---hhhcCCCeEEEEEECCCCcCC
Confidence 9999999999887432222 22222222 212234699999999998654
No 110
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.7e-16 Score=155.31 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+|+|++|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||+..+.. .....+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 83 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA--------ITSAYY 83 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC--------CCGGGT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh--------hHHHHh
Confidence 3479999999999999999999987655444444455555666777664 789999999754311 112224
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++........+...+.... ....|+++|+||+|+..
T Consensus 84 ~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~---~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 84 RGAVGALIVYDISKSSSYENCNHWLSELRENA---DDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC---C--CEEEEEECCGGGGG
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECccccc
Confidence 56999999999987533333222223333321 12359999999999864
No 111
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.67 E-value=2e-16 Score=148.33 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+++|++.... .....++.+.....+.+.+. .+.+|||||+..... .....+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 75 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR--------LRPLSYP 75 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT--------TGGGGCT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH--------HHHHhcc
Confidence 478999999999999999999976532 22223333333334555554 677999999864311 0112245
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 375 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+|++++|+|++++....... .+...+.... ...|+++|+||+|+.+..
T Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 76 QTDVSLICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTSCEEEEEECHHHHTCH
T ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHHhC----CCCCEEEEeEcccccccc
Confidence 699999999998753333322 2334444331 135999999999987643
No 112
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.66 E-value=1.8e-16 Score=148.68 Aligned_cols=119 Identities=21% Similarity=0.202 Sum_probs=74.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..++|+++|++|+|||||+|+|++... ......++.......+.+.+. .+.+|||||+..+... ....+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 75 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF--------PQTYS 75 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC--------CGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH--------HHHHH
Confidence 357999999999999999999996553 233333333333445555554 6789999998643110 11123
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHH-HHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQ-VLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~-iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++........+.. ++..+. ....|+++|+||+|+...
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 76 IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG---KVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccchhc
Confidence 45999999999987533222222222 222222 123599999999998653
No 113
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.66 E-value=4.7e-16 Score=149.81 Aligned_cols=115 Identities=21% Similarity=0.216 Sum_probs=74.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
..+|+++|++|||||||+|+|++..+.. ...|..+....+.+.+..+.+|||||+...-. .....+..+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~---~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~~ 93 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELTIAGMTFTTFDLGGHIQARR--------VWKNYLPAI 93 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC--------GGGGGGGGC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCCCceeEEEEECCEEEEEEECCCcHhhHH--------HHHHHHhcC
Confidence 4789999999999999999999865321 22355566677777666899999999854311 011224569
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCC
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~ 425 (596)
|++++|+|++++..... +..++..+ ........|+++|+||+|+..
T Consensus 94 d~~i~v~D~~~~~s~~~---~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLE---SKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp SEEEEEEETTCGGGHHH---HHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred CEEEEEEECCCHHHHHH---HHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 99999999987632222 22333332 221223469999999999975
No 114
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=167.10 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCC-
Q 007599 254 LQLQRRRILERRSHLLSQIEEVRRT------------RAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDS- 320 (596)
Q Consensus 254 ~e~~rr~i~~ri~~l~~~L~~~~~~------------r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~- 320 (596)
++.+||.|+++|..+++.+++..+. +..+|..|.+ .+.++|+|+|++|||||||+|+|++.
T Consensus 25 ~~~~r~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~------~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 25 IQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGK------PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp HTTCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTTTTC------CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcccchhhcccc------cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4457999999999998877765321 1111222211 24789999999999999999999962
Q ss_pred -----CCcc--------------------------cccccceecCeeEEE--------------EECCceeEeeecccee
Q 007599 321 -----DLFS--------------------------DARLFATLDPRLKSV--------------VLPSGKVLLSDTVGFI 355 (596)
Q Consensus 321 -----~v~~--------------------------~~~~f~Tld~t~~~i--------------~l~~~~i~liDTpG~i 355 (596)
.+.+ .+..+.|..++...+ ...+.++.++||||+.
T Consensus 99 ~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~Gi~ 178 (349)
T 2www_A 99 TERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVG 178 (349)
T ss_dssp HHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CTTHHHHHHHHHHTTCSEEEEECCCC-
T ss_pred hhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHHHHHHHHhhccCCCCEEEEECCCcc
Confidence 1110 112222222211111 0122378999999975
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.. . .++ ...+|++++|+|++.+... ..+.. ++. ..|.++|+||+|+.+
T Consensus 179 ~~---~------~~l--~~~~d~vl~V~d~~~~~~~---~~i~~-----~il---~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 179 QS---E------FAV--ADMVDMFVLLLPPAGGDEL---QGIKR-----GII---EMADLVAVTKSDGDL 226 (349)
T ss_dssp -C---H------HHH--HTTCSEEEEEECCC--------------------C---CSCSEEEECCCSGGG
T ss_pred hh---h------hhH--HhhCCEEEEEEcCCcchhH---HHhHH-----HHH---hcCCEEEEeeecCCC
Confidence 21 1 111 3469999999999765211 11111 111 137899999999864
No 115
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=1e-17 Score=160.79 Aligned_cols=121 Identities=22% Similarity=0.186 Sum_probs=81.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. .+.+|||||....... ....+
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 103 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--------TSSYY 103 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--------SCC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--------HHHHh
Confidence 3579999999999999999999987665555556666666777777765 7899999997543111 11234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
..+|++++|+|++++.. ...+..++..+........|+|+|+||+|+.+..
T Consensus 104 ~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 104 RGAHGIIVVYDVTDQES---FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp CCCSEEEECC-CCCSHH---HHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred hcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhccCCCCEEEEEECccCCccc
Confidence 56999999999988633 3333445544432222346999999999986543
No 116
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.66 E-value=6.6e-16 Score=147.05 Aligned_cols=112 Identities=18% Similarity=0.096 Sum_probs=76.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++........+ |.......+.+.+. .+.+|||+|...+ . .+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~----~~ 83 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPPEL---------Q----FA 83 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSCCH---------H----HH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEEEEEEEEECCCChhh---------h----ee
Confidence 458999999999999999999998654322221 22233346666665 6778999998643 1 34
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC-cccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS-EEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~-~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++. ....+..++..+... .....|+++|+||+|+..
T Consensus 84 ~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEI---SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp HHCSEEEEEEETTCHH---HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred cCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 5699999999998753 333334455444221 123469999999999864
No 117
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.66 E-value=1.6e-17 Score=184.61 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=87.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
+.|+|+++|++|+|||||+|+|++..+.....++.|.+.....+.++++ .+.+|||||+..+... ....+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~--------~~~~~~ 74 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM--------RARGTQ 74 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS--------BBSSSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH--------HHHHHc
Confidence 4589999999999999999999987666666677888877777776555 8999999998654221 122345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++...+.. ..+..+...++ |+|+|+||+|+.+.
T Consensus 75 ~aD~vILVVDa~dg~~~qt~-e~l~~~~~~~v------PiIVViNKiDl~~~ 119 (537)
T 3izy_P 75 VTDIVILVVAADDGVMKQTV-ESIQHAKDAHV------PIVLAINKCDKAEA 119 (537)
T ss_dssp SBSSCEEECBSSSCCCHHHH-HHHHHHHTTTC------CEEECCBSGGGTTT
T ss_pred cCCEEEEEEECCCCccHHHH-HHHHHHHHcCC------cEEEEEeccccccc
Confidence 69999999999987655443 34455555554 89999999998754
No 118
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.66 E-value=2e-16 Score=163.63 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCc-ccccccceecCeeEEEEECCceeEeeecccee-eccchhhHHHHH-HhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLF-SDARLFATLDPRLKSVVLPSGKVLLSDTVGFI-SDLPLQLVDAFH-ATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i-~~lp~~lv~af~-~tl~e~ 373 (596)
..+|+|+|++|||||||+|+|+|..+. ..+.+++|.+...+.+...+.++.++||||+. .. ...+...+. .....+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~-~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE-KRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH-HHHHHHHHTCCTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc-hhhHHHHHHHHHHHHH
Confidence 468999999999999999999998754 34555666665555555554589999999986 21 111111221 123345
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|+++ . ......+.+.+...+ .|+|+|+||+|+..
T Consensus 87 ~~~D~vl~Vvd~~~-~-~~~~~~i~~~l~~~~------~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 87 GDVELVIFVVEGTR-W-TPDDEMVLNKLREGK------APVILAVNKVDNVQ 130 (301)
T ss_dssp CCEEEEEEEEETTC-C-CHHHHHHHHHHHSSS------SCEEEEEESTTTCC
T ss_pred hcCCEEEEEEeCCC-C-CHHHHHHHHHHHhcC------CCEEEEEECcccCc
Confidence 67999999999976 3 333344555554322 49999999999876
No 119
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=153.40 Aligned_cols=119 Identities=19% Similarity=0.170 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+|+|.+|+|||||+|+|++....... ..++.......+.+.+. .+.+|||||....... ....+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGY-DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL--------PYSFI 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-CCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC--------CGGGT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCC-CCccceEEEEEEEECCEEEEEEEEECCCccchHHH--------HHHHH
Confidence 4589999999999999999999987644222 22222222333333333 6789999997543111 12234
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++. ....+..++..+. .......|+|+|+||+|+.+.
T Consensus 94 ~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLH---SFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp TTCCEEEEEEETTCHH---HHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred hcCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 5699999999998753 2333344444432 111234599999999998654
No 120
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.65 E-value=2.2e-16 Score=173.60 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=84.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-------------------------------cccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|++|+|||||+|+|++... ..+...+.|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 357999999999999999999976421 1122346677777777766655
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCCh------HHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL------EEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~------~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.+|||||+..+ ...+...+..+|++++|+|++++.. ..+......++..+++ +|+|+|+
T Consensus 112 ~~~iiDTPG~~~f--------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~-----~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHRDF--------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-----HNLIIAM 178 (483)
T ss_dssp EEEEECCCCCGGG--------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC-----CCEEEEE
T ss_pred eEEEEECCCcHHH--------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC-----CcEEEEE
Confidence 9999999999654 3345566778999999999988632 2344555566667765 3799999
Q ss_pred ecCCCCCc
Q 007599 419 NKIDYHDE 426 (596)
Q Consensus 419 NKiDlv~~ 426 (596)
||+|+.+.
T Consensus 179 NK~Dl~~~ 186 (483)
T 3p26_A 179 NKMDNVDW 186 (483)
T ss_dssp ECGGGGTT
T ss_pred ECcCcccc
Confidence 99998763
No 121
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.65 E-value=9.4e-16 Score=146.55 Aligned_cols=114 Identities=25% Similarity=0.277 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
.+|+++|++|||||||+|+|++.... ....|..+....+.+.+..+.++||||+..... + ....+..+|
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~------~~~~~~~~d 92 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR--L------WKDYFPEVN 92 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTT--S------GGGGCTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC---ccccCCCCCeEEEEECCEEEEEEECCCCHHHHH--H------HHHHHhcCC
Confidence 58999999999999999999986542 123456666777777666899999999864311 0 111235699
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCC
Q 007599 378 LLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 378 liL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~ 425 (596)
++++|+|++++..... +..++..+ ........|+++|+||+|+..
T Consensus 93 ~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 93 GIVFLVDAADPERFDE---ARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEEEEEETTCGGGHHH---HHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEEEEECCChHHHHH---HHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 9999999987643222 22333322 222223469999999999975
No 122
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.65 E-value=1.3e-16 Score=172.62 Aligned_cols=121 Identities=26% Similarity=0.228 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
..++|+++|++|+|||||+|+|++... .....+++|.++....+.+.+. .+.+|||||+..+.... ...+..+...+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~-~~~~~~~~~~l 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG-RLRVEKARRVF 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC-CCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh-HHHHHHHHHHH
Confidence 458999999999999999999999875 4567788899999999998876 99999999997542110 01234456667
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++ .......+...+.+.++ |+|+|+||+|+...
T Consensus 112 ~~aD~vllVvD~~---~~~~~~~~l~~l~~~~~------piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 112 YRADCGILVTDSA---PTPYEDDVVNLFKEMEI------PFVVVVNKIDVLGE 155 (423)
T ss_dssp TSCSEEEEECSSS---CCHHHHHHHHHHHHTTC------CEEEECCCCTTTTC
T ss_pred hcCCEEEEEEeCC---ChHHHHHHHHHHHhcCC------CEEEEEeCcCCCCc
Confidence 7899999999982 23445566677777654 99999999998764
No 123
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.65 E-value=3.8e-16 Score=148.79 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++.... .....++.......+.+.+. .+.+|||||...... .....+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 93 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR--------LRPLSYA 93 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT--------TGGGGCT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH--------HhHhhcc
Confidence 479999999999999999999987642 22222322333334555554 569999999754311 1112345
Q ss_pred hcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++...... ..+...+.... ...|+|+|+||+|+.+.
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI----DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTSEEEEEEECGGGCCT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccC
Confidence 69999999999875333222 23333444331 23599999999998764
No 124
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.65 E-value=9.3e-17 Score=180.71 Aligned_cols=117 Identities=21% Similarity=0.165 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEEC----------C--------ceeEeeeccceeec
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLP----------S--------GKVLLSDTVGFISD 357 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~----------~--------~~i~liDTpG~i~~ 357 (596)
+.|+|+++|++|||||||+++|++..+......+.|.+.....+.+. + ..+.+|||||+..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45899999999999999999999864322222122322222222211 1 14899999999765
Q ss_pred cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 358 LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
... ....+..+|++++|+|++++... +....+..+...++ |+|+|+||+|+.+.+
T Consensus 84 ~~~--------~~r~~~~aD~aILVvDa~~Gv~~-qT~e~l~~l~~~~v------PiIVViNKiDl~~~~ 138 (594)
T 1g7s_A 84 TTL--------RKRGGALADLAILIVDINEGFKP-QTQEALNILRMYRT------PFVVAANKIDRIHGW 138 (594)
T ss_dssp TTS--------BCSSSBSCSEEEEEEETTTCCCH-HHHHHHHHHHHTTC------CEEEEEECGGGSTTC
T ss_pred HHH--------HHHHHhhCCEEEEEEECCCCccH-hHHHHHHHHHHcCC------eEEEEeccccccccc
Confidence 211 11224569999999999987443 44445566666554 999999999997643
No 125
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.64 E-value=5.3e-16 Score=155.68 Aligned_cols=126 Identities=16% Similarity=0.147 Sum_probs=84.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCccccc-cc-ceecCeeEEEEECCceeEeeeccceeeccch--hhHHH-HHHhH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDAR-LF-ATLDPRLKSVVLPSGKVLLSDTVGFISDLPL--QLVDA-FHATL 370 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~-~f-~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~--~lv~a-f~~tl 370 (596)
...+|+|+|++|||||||+|+|++........ +. +|.+.....+.+.+..+.+|||||+...... ..... .....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999987554433 33 5666666667776669999999999753211 11111 22233
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEe-cCCCCC
Q 007599 371 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWN-KIDYHD 425 (596)
Q Consensus 371 ~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlN-KiDlv~ 425 (596)
..+..+|++++|+|++. .......++..+..+ +. ....|.|+|+| |+|+..
T Consensus 101 ~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTT
T ss_pred hcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCC
Confidence 34567999999999986 233444455555554 21 11237777777 999974
No 126
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.64 E-value=9.9e-16 Score=147.33 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++...... ...++.......+.+.+. .+.+|||||+...... ....+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~ 95 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL--------RPLSYP 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTT--------GGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEEEEEEEEECCCchhHHHH--------HHHhcC
Confidence 36899999999999999999998754332 222233333345566654 7889999998543110 112345
Q ss_pred hcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 375 EADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+|++++|+|++++...... ..+...+.... ...|+++|+||+|+.+..
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 96 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRQDE 145 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGTTCH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEecHHhhcCc
Confidence 69999999999875332222 33444444431 135999999999997653
No 127
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=6.9e-16 Score=149.11 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|+|||||+|+|++...... ...++.......+.+.+. .+.+|||||+..... .....+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 96 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR--------LRPLSYPD 96 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTT--------TGGGGCTT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH--------HHHhhcCC
Confidence 6899999999999999999998654322 222222333334555554 788999999864311 11123456
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 376 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+|++++|+|++++...... ..+...+.... ...|+++|+||+|+.+..
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 97 TDVILMCFSVDSPDSLENIPEKWVPEVKHFC----PNVPIILVANKKDLRSDE 145 (207)
T ss_dssp CCEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGGGCH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhhhccc
Confidence 9999999999875322222 33334444431 135999999999997643
No 128
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1.7e-15 Score=144.62 Aligned_cols=118 Identities=19% Similarity=0.124 Sum_probs=75.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++...... ...++.......+.+.+. .+.+|||||+.. ..+ ....+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~~~------~~~~~~ 97 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED---TIQ------REGHMR 97 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---CHH------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc---ccc------hhhhhc
Confidence 47899999999999999999998754322 222222222334555554 689999999875 111 122345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++........+...+..... ....|+|+|+||+|+.+.
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSCCCEEEEEECGGGGGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC--CCCCcEEEEEECcccccc
Confidence 69999999999875332222333333333211 123599999999998553
No 129
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.64 E-value=1.8e-16 Score=153.17 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=77.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+++|++.... .....++.+.....+.+.+. .+.+|||||+..... .....+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~ 100 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR--------LRPLSYP 100 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT--------TGGGGCT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH--------HHHHHhc
Confidence 479999999999999999999976432 23333344444444555544 566999999854311 1112345
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 375 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.+|++++|+|++++....... .+...+.... ...|+|+|+||+|+.+...
T Consensus 101 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSCCEEEEEECHHHHTCHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhccchh
Confidence 699999999998764333332 3344444432 2359999999999976543
No 130
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.4e-15 Score=144.60 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=77.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|++|+|||||+|+|++... ......++.+.....+.+.+. .+.+|||||+..+.. + ....+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--~------~~~~~~ 88 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR--L------RPLSYP 88 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT--T------GGGGCT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH--H------HHHhcC
Confidence 46999999999999999999998643 233333333444445555553 788999999865311 1 112245
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 375 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+|++++|+|++++....... .+...+.... ...|+++|+||+|+.+..
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA----PNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECTTSTTCH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhcccc
Confidence 699999999998753322222 2333343321 135999999999997653
No 131
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.63 E-value=1.1e-15 Score=144.47 Aligned_cols=122 Identities=16% Similarity=0.020 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCccccc--------ccceecCeeE--EE-EECCc--eeEeeeccceeeccchhh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDAR--------LFATLDPRLK--SV-VLPSG--KVLLSDTVGFISDLPLQL 362 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~--------~f~Tld~t~~--~i-~l~~~--~i~liDTpG~i~~lp~~l 362 (596)
...+|+++|.+|+|||||++.|.+........ ...|...... .+ .+.+. .+.+|||||+.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH---
Confidence 34789999999999999999998853221110 0112111111 11 12222 688999999865311
Q ss_pred HHHHHHhHHHHHhcCEEEEEEeCCCCChH---HHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 363 VDAFHATLEEVVEADLLVHVLDCTAPNLE---EHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 363 v~af~~tl~e~~~aDliL~VvDas~~~~~---~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.....+..+|++++|+|++++... .....+..++..+.. .....|+++|+||+|+.+.
T Consensus 90 -----~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 90 -----SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp -----HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC
T ss_pred -----HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc
Confidence 112245679999999999865322 334455566776632 2234699999999998653
No 132
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=146.77 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++.. ......+++.+.....+.+.+. .+.+|||||+...... ....+
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 89 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL--------RPLCY 89 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS--------GGGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH--------hHhhc
Confidence 35899999999999999999999865 2333334443333445555554 6779999998643111 11124
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++....... .+...+.... ...|+++|+||+|+.+.
T Consensus 90 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC----PKAPIILVGTQSDLRED 139 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSSCEEEEEECGGGGGC
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhc
Confidence 5699999999998753322222 2333333321 13599999999998754
No 133
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.63 E-value=2.5e-16 Score=150.47 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=52.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccce-ecCeeEEEEECC---c-eeEeeeccceeeccchhhHHHHHHhH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFAT-LDPRLKSVVLPS---G-KVLLSDTVGFISDLPLQLVDAFHATL 370 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~T-ld~t~~~i~l~~---~-~i~liDTpG~i~~lp~~lv~af~~tl 370 (596)
..+|+++|.+|+|||||+|+|++... .......++ .+.....+.+.+ . .+.+|||||+... .....
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~ 91 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY--------KEQIS 91 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH--------HHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH--------HHHHH
Confidence 36999999999999999999998732 122222222 355666777765 3 7899999998532 11122
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 371 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 371 ~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
..+..+|++++|+|++++........+...+....-......|+++|+||+|+.+
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 2345699999999998753322322222233222110012359999999999865
No 134
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.63 E-value=2.5e-15 Score=145.27 Aligned_cols=119 Identities=21% Similarity=0.157 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC--c-eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS--G-KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~--~-~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
.++|+++|++|+|||||+++|++... ..... |+......+.+.+ + .+.+|||||+.... .. .....+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----~~--~~~~~~ 76 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQT--SITDSSAIYKVNNNRGNSLTLIDLPGHESLR-----FQ--LLDRFK 76 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCC--CCSCEEEEEECSSTTCCEEEEEECCCCHHHH-----HH--HHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccC--CcceeeEEEEecCCCccEEEEEECCCChhHH-----HH--HHHHHH
Confidence 47999999999999999999998653 22222 2223334466654 2 79999999986321 00 112235
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHc----CCCcccCCcEEEEEecCCCCCccc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQV----GVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~l----gi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
..+|++++|+|+++. ......+.+++..+ .. .....|+++|+||+|+.....
T Consensus 77 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 77 SSARAVVFVVDSAAF--QREVKDVAEFLYQVLIDSMA-LKNSPSLLIACNKQDIAMAKS 132 (214)
T ss_dssp GGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHT-STTCCEEEEEEECTTSTTCCC
T ss_pred hhCCEEEEEEECCCc--CHHHHHHHHHHHHHHhhhhh-cccCCCEEEEEECCCCCCccc
Confidence 679999999999762 22222233332221 11 112359999999999987543
No 135
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.63 E-value=1.1e-15 Score=167.99 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+|+|.+|+|||||+|+|++..... .+.|.......+.+.+..+.+|||||...+.. .....+..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~---~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 389 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP--------LWRHYYTG 389 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEEESSSCEEEEEEECCCGGGSG--------GGGGGGTT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC---cCCccceeEEEEEeCCEEEEEEECCCcHHHHH--------HHHHHhcc
Confidence 34789999999999999999999876322 24577777777776555999999999754311 12334567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++..... +..++..+ ........|+|+|+||+|+.+.
T Consensus 390 ad~~i~V~D~~~~~s~~~---~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 390 TQGLIFVVDCADRDRIDE---ARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp CCEEEEEEETTCGGGHHH---HHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred CCEEEEEEECcchhHHHH---HHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 999999999987633222 22233222 2112234699999999998653
No 136
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.63 E-value=1e-15 Score=153.69 Aligned_cols=127 Identities=17% Similarity=0.051 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCccccccc--ceecCeeEEEEECCceeEeeeccceeeccch---hhHHHH-HHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLF--ATLDPRLKSVVLPSGKVLLSDTVGFISDLPL---QLVDAF-HAT 369 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f--~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~---~lv~af-~~t 369 (596)
...+|+|+|++|||||||+|+|++.........+ +|..+....+.+.+..+.++||||+...... .+...+ ...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4579999999999999999999998876554443 6677777777777669999999998643111 111111 222
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCcccCCcEEEEEecCCCCC
Q 007599 370 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 370 l~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
......+|++++|+|+++. .. ....+.+.+.. ++. .....|+|+|.||+|+.+
T Consensus 100 ~~~~~~~d~il~V~d~~~~-~~-~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGRF-TA-QDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHTTCCSEEEEEEETTBC-CH-HHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTT
T ss_pred HhcCCCCCEEEEEEeCCCC-CH-HHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCC
Confidence 2334789999999999853 23 33344444444 332 112358999999999865
No 137
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.62 E-value=8.6e-17 Score=177.36 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=83.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
+.|+|+++|++|+|||||+++|++..+......+.|.+.....+.+++..+.+|||||+..+... ....+..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~--------~~~~~~~ 74 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM--------RARGAQA 74 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS--------BCSSSBS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH--------HHHHHhh
Confidence 46899999999999999999999865544455566666655555555558999999999754221 1223456
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++...+..+ .+..+...++ |+|+|+||+|+.+.
T Consensus 75 aD~aILVVda~~g~~~qT~e-~l~~~~~~~v------PiIVviNKiDl~~~ 118 (501)
T 1zo1_I 75 TDIVVLVVAADDGVMPQTIE-AIQHAKAAQV------PVVVAVNKIDKPEA 118 (501)
T ss_dssp CSSEEEEEETTTBSCTTTHH-HHHHHHHTTC------CEEEEEECSSSSTT
T ss_pred CCEEEEEeecccCccHHHHH-HHHHHHhcCc------eEEEEEEecccccc
Confidence 99999999998864433333 3355555554 89999999999754
No 138
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=146.52 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=67.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++.... .....++.+.....+.+.+. .+.+|||||+.... ......+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~~ 104 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD--------RLRPLFYP 104 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh--------HHHHHHhc
Confidence 478999999999999999999986532 22223333333444555554 78899999985431 11122345
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 375 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+|++++|+|++++....... .+...+.... ...|+|+|+||+|+....
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 105 DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC----KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSCCEEEEEECGGGGSCH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhhccc
Confidence 799999999998753322221 2333333321 235999999999997654
No 139
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=157.73 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=75.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
...+|+|+|.+|+|||||+|+|++..+.. . ..|.......+...+..+.+|||||...+.. .....+..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~-~--~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 232 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQN 232 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEE-E--EEETTEEEEEEEETTEEEEEEECC-----CC--------SHHHHHTT
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCC-c--ccccceEEEEEecCcEEEEEEECCCCHhHHH--------HHHHHhcc
Confidence 34689999999999999999999876422 2 2355555566666555899999999754311 12233556
Q ss_pred cCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++...... ..+..++ ........|+|+|+||+|+.+.
T Consensus 233 ad~vilV~D~~~~~s~~~~~~~~~~~~---~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 233 TQGLIFVVDSNDRERVNEAREELMRML---AEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp EEEEEEEEETTCSSSHHHHHHHHHHHH---TCGGGTTCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECCchHHHHHHHHHHHHHH---hhhccCCCeEEEEEECccCCcc
Confidence 9999999999876433222 2222222 2222234699999999998764
No 140
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.61 E-value=1.7e-15 Score=161.36 Aligned_cols=102 Identities=15% Similarity=0.228 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEAD 377 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aD 377 (596)
++|+++|++|+|||||+++|+ ..+.|++.....+.+.+..+.+|||||+..+ .......+..+|
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f--------~~~~~~~~~~aD 85 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT--------LKSLITALNISD 85 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTC--------HHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHH--------HHHHHHHHHHCC
Confidence 489999999999999999998 3466777766666665559999999999754 233445567899
Q ss_pred EEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcE-EEEEe-cCCC
Q 007599 378 LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM-IEVWN-KIDY 423 (596)
Q Consensus 378 liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~Pi-IvVlN-KiDl 423 (596)
++++|+| +.+. ..+....+..+..+++ |. |+|+| |+|+
T Consensus 86 ~ailVvd-~~g~-~~qt~e~~~~~~~~~i------~~~ivvvNNK~Dl 125 (370)
T 2elf_A 86 IAVLCIP-PQGL-DAHTGECIIALDLLGF------KHGIIALTRSDST 125 (370)
T ss_dssp EEEEEEC-TTCC-CHHHHHHHHHHHHTTC------CEEEEEECCGGGS
T ss_pred EEEEEEc-CCCC-cHHHHHHHHHHHHcCC------CeEEEEEEeccCC
Confidence 9999999 6654 4455555667777775 55 99999 9999
No 141
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=144.11 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+|+|++.... .....++.+.....+.+.+. .+.+|||||...+.. + ...+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~-------~~~~ 89 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--C-------ERYL 89 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--T-------HHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--H-------HHHH
Confidence 3478999999999999999999986532 22222222222234455554 678999999865321 1 1235
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCC---cccCCcEEEEEecCCCCC
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVS---EEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~---~~~~~PiIvVlNKiDlv~ 425 (596)
..+|++++|+|++++.. ...+..++..+... .....|+|+|+||+|+..
T Consensus 90 ~~~~~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 90 NWAHAFLVVYSVDSRQS---FDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp TTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred hhCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 56999999999986532 33333333332111 012359999999999854
No 142
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.61 E-value=5.7e-16 Score=144.90 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|++|+|||||+|+|++.... .....++.+.....+.+.+. .+.+|||||+..... .....+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 77 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR--------LRPLSY 77 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTT--------TGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh--------hHHhhc
Confidence 3578999999999999999999986532 22222222222222223333 567999999864311 112234
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
..+|++++|+|++++....... .+...+.... ...|+++|+||+|+.+..
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 78 RGADVFILAFSLISKASYENVSKKWIPELKHYA----PGVPIVLVGTKLDLRDDK 128 (182)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCH
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhhcCc
Confidence 5699999999998753323322 2334444331 135999999999986643
No 143
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.61 E-value=1e-15 Score=164.41 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC--------CCc---------ccccccceecCeeEEEEECCceeEeeeccceeecc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS--------DLF---------SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDL 358 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~--------~v~---------~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l 358 (596)
...+|+++|++|+|||||+|+|++. ... .+...+.|.+.....+...+..+.+|||||+..+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 4579999999999999999999973 100 0113445666544444444448999999999754
Q ss_pred chhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCC
Q 007599 359 PLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 425 (596)
Q Consensus 359 p~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~ 425 (596)
...+...+..+|++++|+|++++... +....+..+...++ | +|+|+||+|+.+
T Consensus 89 -------~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~~i------p~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 -------IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQVGV------PYIVVFMNKVDMVD 142 (405)
T ss_dssp -------HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHTTC------CCEEEEEECGGGCC
T ss_pred -------HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHcCC------CEEEEEEECccccC
Confidence 23345566789999999999987544 44455566666665 6 889999999975
No 144
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.1e-16 Score=176.16 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccc-------------------------------cccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDA-------------------------------RLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~-------------------------------~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|++|+|||||+|+|++....+.. ..+.|.+.....+...+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 4679999999999999999999976432221 256788888888887666
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCCh------HHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL------EEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~------~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.+|||||+..+ ...+...+..+|++++|+|++.+.. ..+.......+..+++ +|+|+|+
T Consensus 246 ~~~iiDTPG~e~f--------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi-----~~iIVVv 312 (611)
T 3izq_1 246 NFTIVDAPGHRDF--------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-----HNLIIAM 312 (611)
T ss_dssp EEEEEECCSSSCH--------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTC-----CEEEEEE
T ss_pred eEEEEECCCCccc--------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCC-----CeEEEEE
Confidence 9999999999653 3334555677999999999986411 1334444455555564 3699999
Q ss_pred ecCCCCCc
Q 007599 419 NKIDYHDE 426 (596)
Q Consensus 419 NKiDlv~~ 426 (596)
||+|+++.
T Consensus 313 NKiDl~~~ 320 (611)
T 3izq_1 313 NKMDNVDW 320 (611)
T ss_dssp ECTTTTTT
T ss_pred ecccccch
Confidence 99999763
No 145
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.61 E-value=2.2e-15 Score=148.77 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+|+|.+|+|||||+++++.........+....+.....+...+. .+.+|||+|...+. .+ +...+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~--~l------~~~~~~~ 85 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR--SL------IPSYIRD 85 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG--GG------HHHHHTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh--hH------HHHHhcc
Confidence 68999999999999999999976543332222223444445555554 77899999986541 11 2234567
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
++++++|+|+++.... ..+..++..+........|+|+|.||+|+.+.
T Consensus 86 a~~~ilv~di~~~~Sf---~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 86 SAAAVVVYDITNVNSF---QQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp CSEEEEEEETTCHHHH---HTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred ccEEEEEeecchhHHH---HHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 9999999999875333 33334443332111233599999999998654
No 146
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.61 E-value=1.5e-15 Score=146.64 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|.+|+|||||+++|++... ......++.+.....+.+.+. .+.+|||||+..+... ....+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 78 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL--------RPLSY 78 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------CGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH--------HHhhc
Confidence 457899999999999999999998654 233333333444445555554 7899999998653211 11124
Q ss_pred HhcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++....... .+...+.... ...|+|+|+||+|+.+.
T Consensus 79 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 79 RGADIFVLAFSLISKASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTC
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhC
Confidence 5699999999998753322221 2333343331 13599999999998654
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.60 E-value=9.4e-16 Score=155.94 Aligned_cols=125 Identities=23% Similarity=0.246 Sum_probs=74.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccc------cceecCeeEEEEECC-c---eeEeeeccceee---------c
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARL------FATLDPRLKSVVLPS-G---KVLLSDTVGFIS---------D 357 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~------f~Tld~t~~~i~l~~-~---~i~liDTpG~i~---------~ 357 (596)
..+|+|+|++|+|||||+|+|++.+......+ ..|+........+.. + .+.++||||+.. .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 47899999999999999999999877655542 555555555555432 2 789999999832 2
Q ss_pred cchhhHHHHHHhHHHHH----------hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 358 LPLQLVDAFHATLEEVV----------EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 358 lp~~lv~af~~tl~e~~----------~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+.+.+...|...+.+.. .+|+++++++.+..........+.+.+.. ..|+|+|+||+|++...
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-------TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-------cCCEEEEEeccCCCCHH
Confidence 22233344444444321 25688888866542223333333333332 25999999999987654
Q ss_pred c
Q 007599 428 M 428 (596)
Q Consensus 428 ~ 428 (596)
+
T Consensus 161 e 161 (274)
T 3t5d_A 161 E 161 (274)
T ss_dssp H
T ss_pred H
Confidence 3
No 148
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.60 E-value=4.9e-15 Score=139.51 Aligned_cols=117 Identities=25% Similarity=0.264 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeecc--chhhHHHHHH----hHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDL--PLQLVDAFHA----TLE 371 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l--p~~lv~af~~----tl~ 371 (596)
++|+++|.+|+|||||+|+|++........++.|.... .+.+. .+.++||||+.... +....+.+.. .+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999998765555555555443 33332 78999999964321 1111222222 222
Q ss_pred H-HHhcCEEEEEEeCCCCChHHHHHH------------HHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 372 E-VVEADLLVHVLDCTAPNLEEHRTT------------VLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 372 e-~~~aDliL~VvDas~~~~~~~~~~------------v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
. ...++++++|+|.+.. ...... +...+...+ .|+++|+||+|+...
T Consensus 78 ~~~~~~~~v~~v~d~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAA--PEIIKRWEKRGEIPIDVEFYQFLRELD------IPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHGGGCCEEEEEEETTHH--HHHHHHHHHTTCCCHHHHHHHHHHHTT------CCEEEEEECGGGCSC
T ss_pred hhhccCCEEEEEEcchhh--hhHHHhhhccCccHHHHHHHHHHHhcC------CceEEEeehHhccCc
Confidence 2 4456788888887532 111011 122222222 499999999998764
No 149
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.59 E-value=4.1e-15 Score=152.98 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCe----e-----------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR----L----------------------------------- 336 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t----~----------------------------------- 336 (596)
..|.|+|+|++|||||||+|+|+|..+.......+|..++ .
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 5799999999999999999999998753222211222110 0
Q ss_pred --------------------EEEEECCc-eeEeeeccceeec----cchhhHHHH-HHhHHHHHhcCEEEEEEeCC-CCC
Q 007599 337 --------------------KSVVLPSG-KVLLSDTVGFISD----LPLQLVDAF-HATLEEVVEADLLVHVLDCT-APN 389 (596)
Q Consensus 337 --------------------~~i~l~~~-~i~liDTpG~i~~----lp~~lv~af-~~tl~e~~~aDliL~VvDas-~~~ 389 (596)
-.+..++. ++.++||||+... .+..+...+ ..+...+..+|++++|+|++ .+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 01122333 7999999999741 122333333 34556677899999999974 332
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 390 LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 390 ~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.......+.+.+... ..|+|+|+||+|+....
T Consensus 183 ~~~~~~~i~~~~~~~------~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 183 ANSDALQLAKEVDPE------GKRTIGVITKLDLMDKG 214 (315)
T ss_dssp TTCSHHHHHHHHCSS------CSSEEEEEECTTSSCSS
T ss_pred hhhHHHHHHHHhCCC------CCcEEEEEcCcccCCcc
Confidence 212222333333322 25999999999987643
No 150
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.59 E-value=3.2e-15 Score=161.51 Aligned_cols=125 Identities=27% Similarity=0.355 Sum_probs=91.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC-ceeEeeeccceeeccch--hhHHHHHHhHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-GKVLLSDTVGFISDLPL--QLVDAFHATLEEV 373 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~-~~i~liDTpG~i~~lp~--~lv~af~~tl~e~ 373 (596)
...|+|+|++|||||||||+|++....+.+++|+|+.+..+.+.+.+ ..+.++||||++..... .+...| +..+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f---l~~~ 233 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF---LRHI 233 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH---HHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH---HHHH
Confidence 36799999999999999999999877778899999999999988876 48999999999754221 111122 3445
Q ss_pred HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..++.+++|+|++ .....+.....+.+..+.. ....+|.|+|+||+|+...
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~-aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP-ALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH-HHHHSCEEEEEECCTTSCH
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH-HhhcCCEEEEEECCChhhH
Confidence 6799999999997 3334444444444444431 1122599999999998654
No 151
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.59 E-value=1e-14 Score=139.68 Aligned_cols=122 Identities=14% Similarity=0.074 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEE--EEC-Cc--eeEeeeccceeeccchhhHHHHHHhH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSV--VLP-SG--KVLLSDTVGFISDLPLQLVDAFHATL 370 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i--~l~-~~--~i~liDTpG~i~~lp~~lv~af~~tl 370 (596)
...+|+++|.+|+|||||+|+|++... .. ...+.+.+...+ .+. +. .+.+|||||...+...... ..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~ 90 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD-----YE 90 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----HH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----cc
Confidence 457999999999999999999998532 21 122223332222 332 22 8999999998653111100 02
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 371 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 371 ~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
..+..+|++++|+|++++ ..+....+..++..+.. .....|+++|+||+|+++.+
T Consensus 91 ~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYK-VNPDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp HHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGGGSCHH
T ss_pred cccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccccCchh
Confidence 334569999999999986 45566666677776511 11235999999999998754
No 152
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.58 E-value=4e-15 Score=145.13 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++...... ...++.......+.+.+. .+.+|||+|...+... ....+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~ 97 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPET-YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV--------RPLCYS 97 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT--------GGGGCT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC-cCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH--------HHHHcC
Confidence 47999999999999999999998754322 222222222333444443 7889999998643111 112245
Q ss_pred hcCEEEEEEeCCCCChHHH-HHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEH-RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~-~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++..... ...+...+.... ...|+|+|+||+|+.++
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDYC----PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC----TTSEEEEEEECGGGGGC
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccc
Confidence 6999999999998643333 233444444432 23599999999998754
No 153
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.58 E-value=2.7e-15 Score=160.85 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC------c----------ccccccceecCeeEEEEECCceeEeeeccceeeccch
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL------F----------SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPL 360 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v------~----------~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~ 360 (596)
..+|+++|++|+|||||+++|++... . .+...+.|++.....+...+..+.++||||+..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f--- 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY--- 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH---
Confidence 36899999999999999999997310 0 1113445666544334433348999999999643
Q ss_pred hhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCC
Q 007599 361 QLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 425 (596)
Q Consensus 361 ~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~ 425 (596)
...+...+..+|++++|+|++++...+..+ .+..+...++ | +|+|+||+|+.+
T Consensus 80 -----~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~~~v------p~iivviNK~Dl~~ 133 (397)
T 1d2e_A 80 -----VKNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQIGV------EHVVVYVNKADAVQ 133 (397)
T ss_dssp -----HHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHHTTC------CCEEEEEECGGGCS
T ss_pred -----HHHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHHcCC------CeEEEEEECcccCC
Confidence 223444566799999999999875444443 4466666665 6 789999999875
No 154
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.58 E-value=1.6e-14 Score=147.24 Aligned_cols=125 Identities=22% Similarity=0.292 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc------ccccc----------------------ceecC-------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS------DARLF----------------------ATLDP------------- 334 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~------~~~~f----------------------~Tld~------------- 334 (596)
..+.|+++|.+|||||||+|+|+|..+.. ...+. +|.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 56899999999999999999999987531 11121 22110
Q ss_pred ----------eeEEEEECC-ceeEeeeccceeecc----chhhHHHHHH-hHHHHHhcCEEE-EEEeCCCCChHHHHHHH
Q 007599 335 ----------RLKSVVLPS-GKVLLSDTVGFISDL----PLQLVDAFHA-TLEEVVEADLLV-HVLDCTAPNLEEHRTTV 397 (596)
Q Consensus 335 ----------t~~~i~l~~-~~i~liDTpG~i~~l----p~~lv~af~~-tl~e~~~aDliL-~VvDas~~~~~~~~~~v 397 (596)
..-.+..++ ..+.+|||||+.... +......+.. +...+..++.++ +|+|++.+......
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--- 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--- 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH---
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH---
Confidence 001112222 389999999987521 3333223332 334455677555 79999875333222
Q ss_pred HHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 398 LQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 398 ~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..++..+.- ...|+|+|+||+|+.+.
T Consensus 182 ~~~~~~~~~---~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 182 LKIAKEVDP---QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHHCT---TCSSEEEEEECGGGSCT
T ss_pred HHHHHHhCC---CCCeEEEEEEccccCCC
Confidence 233444332 23599999999998764
No 155
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.58 E-value=2.2e-15 Score=146.77 Aligned_cols=116 Identities=20% Similarity=0.075 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH-CCCC-cccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALS-DSDL-FSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLE 371 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLt-g~~v-~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~ 371 (596)
...+|+++|.+|+|||||+|+++ +... ......+.|... ..+.+.+. .+.+|||||+..... ....
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~ 83 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTNRGPIKFNVWDTAGQEKFGG--------LRDG 83 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEE--EEEEETTEEEEEEEEEECSGGGTSC--------CCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE--EEEEECCEEEEEEEEeCCChHHHhH--------HHHH
Confidence 45799999999999999999944 4211 111222222222 23334443 789999999754311 1222
Q ss_pred HHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 372 EVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 372 e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+..+|++++|+|++++........+...+.... ...|+|+|+||+|+.+
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKD 133 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS----TTCCEEEEEECTTSSS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECCcccc
Confidence 3456999999999987533222222223332221 1359999999999864
No 156
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.57 E-value=2.7e-14 Score=136.93 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=74.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...+|+++|.+|+|||||+|++++... .......++.+.....+.+.+. .+.++||+|..... ..+ ....
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~-~~~------~~~~ 77 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN-EWL------HDHC 77 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTT------GGGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh-hhH------HHhh
Confidence 357899999999999999999997432 2333333444444556677665 56789999975320 011 1112
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
...+|.+++|+|+++.........+...+..... ....|+|+|.||+|+..
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~--~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNKSDLVR 128 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT--TSCCCEEEEEECTTCGG
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCeEEEEEechhhhc
Confidence 3458999999999875333333333333443321 12359999999999854
No 157
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.1e-14 Score=143.19 Aligned_cols=120 Identities=16% Similarity=0.111 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
...+|+|+|.+|+|||||+|++++... .......++.+.....+.+.+. .+.++||+|.... ..+ .....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~------~~~-l~~~~ 108 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE------NEW-LHDHC 108 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH------HHH-HHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch------hhh-HHHHH
Confidence 347899999999999999999998543 2233333333444455666665 5788999997431 011 11112
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcC-CCcccCCcEEEEEecCCCCC
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVG-VSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lg-i~~~~~~PiIvVlNKiDlv~ 425 (596)
...+|.+++|+|+++... ...+..++..+. .......|+|+|+||+|+..
T Consensus 109 ~~~a~~~ilVydvt~~~s---f~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRAS---FEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp CCCCSEEEEEEETTCHHH---HHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred HhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 345899999999986432 233333333221 11122469999999999854
No 158
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.35 E-value=1.9e-16 Score=152.23 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=73.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++.... .....++.+.....+.+.+. .+.+|||||+.... ......+.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~ 100 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD--------RLRPLSYP 100 (204)
Confidence 368999999999999999999975432 22223333333333444443 56699999985431 11122345
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+|++++|+|++++....... ..++..+.... ...|+++|+||+|+.+..
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~--~~~~~~l~~~~-~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 101 QTDVFLICFSLVSPASFENVR--AKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
Confidence 699999999998764332221 12222222111 135999999999997654
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.57 E-value=1.9e-14 Score=147.94 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=76.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||++++++... ......++.+.....+.+.+. .+.+|||||+..... .....+.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 225 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR--------LRPLSYP 225 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT--------TGGGGCT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH--------HHHHhcc
Confidence 48999999999999999999997653 233334444444445555555 566999999854311 1112245
Q ss_pred hcCEEEEEEeCCCCChHHHHH-HHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHRT-TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~-~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++....... .+...+....- ..|+|+|+||+|+.+.
T Consensus 226 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRDD 274 (332)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHTC
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhcccc
Confidence 699999999998753322222 23334443321 3599999999998654
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.56 E-value=7.6e-15 Score=159.16 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcc-c--------------------------------ccccceecCeeEEEEEC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFS-D--------------------------------ARLFATLDPRLKSVVLP 342 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~-~--------------------------------~~~f~Tld~t~~~i~l~ 342 (596)
...+|+++|++|+|||||+|+|++..... . ...+.|++.....+...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 35799999999999999999998643110 0 01234445444444444
Q ss_pred CceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCC
Q 007599 343 SGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKID 422 (596)
Q Consensus 343 ~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiD 422 (596)
+..+.+|||||+..+ .......+..+|++++|+|++++...+ ......++..+++ +|+|+|+||+|
T Consensus 103 ~~~~~iiDtpGh~~f--------~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~~~-----~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQY--------TRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLGI-----KHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGGG--------HHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTTC-----CEEEEEEECTT
T ss_pred CceEEEEECCChHHH--------HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcCC-----CeEEEEEEcCc
Confidence 458999999998653 122344567899999999999875433 3344456666664 36899999999
Q ss_pred CCCc
Q 007599 423 YHDE 426 (596)
Q Consensus 423 lv~~ 426 (596)
+.+.
T Consensus 169 l~~~ 172 (434)
T 1zun_B 169 LNGF 172 (434)
T ss_dssp TTTS
T ss_pred CCcc
Confidence 9763
No 161
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.55 E-value=2.9e-16 Score=176.80 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=63.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHCCCC-------------------------------cccccccceecCeeEEEEECC
Q 007599 295 RGLATVAVVGYTNAGKSTLVSALSDSDL-------------------------------FSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 295 ~~~~~VaLVG~tgAGKSTLLNaLtg~~v-------------------------------~~~~~~f~Tld~t~~~i~l~~ 343 (596)
+...+|+++|++|+|||||+|+|++... ..+...++|++.....+.+.+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 3567899999999999999999964210 111244667777777776665
Q ss_pred ceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCC----h--HHHHHHHHHHHHHcCCCcccCCcEEEE
Q 007599 344 GKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN----L--EEHRTTVLQVLQQVGVSEEKLKNMIEV 417 (596)
Q Consensus 344 ~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~----~--~~~~~~v~~iL~~lgi~~~~~~PiIvV 417 (596)
..+.||||||+..+... +...+..+|++++|+|++++. . ..+......++..+++ .++|+|
T Consensus 255 ~~i~iiDTPGh~~f~~~--------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgi-----p~iIvv 321 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG--------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGI-----SEIVVS 321 (592)
T ss_dssp ----CCEEESSSEEEEE--------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSC-----CCEEEE
T ss_pred eEEEEEECCChHHHHHH--------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC-----CeEEEE
Confidence 68999999999765332 223345699999999998642 1 2334444566777776 248999
Q ss_pred EecCCCCC
Q 007599 418 WNKIDYHD 425 (596)
Q Consensus 418 lNKiDlv~ 425 (596)
+||+|+++
T Consensus 322 iNKiDl~~ 329 (592)
T 3mca_A 322 VNKLDLMS 329 (592)
T ss_dssp EECGGGGT
T ss_pred Eecccccc
Confidence 99999876
No 162
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.55 E-value=2.5e-15 Score=142.09 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=74.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEV 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~ 373 (596)
...+|+++|++|+|||||+|+|++..... ....++.......+.+.+. .+.+|||||+..+.. + ....+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~------~~~~~ 76 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN--V------RPLSY 76 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT--T------GGGGC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh--h------HHhhc
Confidence 34789999999999999999999865432 2222222222334445444 789999999854311 1 11124
Q ss_pred HhcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 374 VEADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 374 ~~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+|++++|+|++++...... ..+...+.... ...|+|+|+||+|+.+.
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 77 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGGC
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEEEcchhhcc
Confidence 569999999999875332222 22333333321 23599999999998653
No 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.55 E-value=1.4e-14 Score=162.85 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=74.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc---------------ccccccceecCeeEEEEECC--c---eeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---------------SDARLFATLDPRLKSVVLPS--G---KVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~---------------~~~~~f~Tld~t~~~i~l~~--~---~i~liDTpG~i 355 (596)
++++|+++|++|+|||||+++|+..... .+...+.|+......+.+.. + .+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4689999999999999999999752110 11124456665555665542 2 78899999997
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+. ......+..+|.+++|+|++++...+.. ..+..+...++ |+|+|+||+|+...
T Consensus 85 dF~--------~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~~~i------piIvviNKiDl~~a 140 (600)
T 2ywe_A 85 DFS--------YEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVEQDL------VIIPVINKIDLPSA 140 (600)
T ss_dssp GGH--------HHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHHTTC------EEEEEEECTTSTTC
T ss_pred hHH--------HHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHCCC------CEEEEEeccCcccc
Confidence 541 1223345679999999999987544433 33344444444 89999999998754
No 164
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.54 E-value=7.9e-15 Score=159.15 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC--Cc-----------------------------ccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD--LF-----------------------------SDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~--v~-----------------------------~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|++|+|||||+++|++.. +. .+...+.|++.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45799999999999999999998641 11 011245666666666666555
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCC------hHHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN------LEEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~------~~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.+|||||+..+ ...+...+..+|++++|+|++++. ...+.......+..+++ .|+|+|+
T Consensus 85 ~~~iiDtpG~~~f--------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~-----~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRDF--------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGL-----DQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTTH--------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTC-----TTCEEEE
T ss_pred EEEEEECCCcHHH--------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC-----CeEEEEE
Confidence 9999999999753 123444567799999999998852 12244455556666665 3689999
Q ss_pred ecCCCCCc
Q 007599 419 NKIDYHDE 426 (596)
Q Consensus 419 NKiDlv~~ 426 (596)
||+|+.+.
T Consensus 152 NK~Dl~~~ 159 (435)
T 1jny_A 152 NKMDLTEP 159 (435)
T ss_dssp ECGGGSSS
T ss_pred EcccCCCc
Confidence 99999764
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.54 E-value=4.8e-14 Score=135.27 Aligned_cols=118 Identities=20% Similarity=0.158 Sum_probs=76.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+|+|++|||||||+|+|++........+..+.+...+.+.+.+. .+.+|||+|...... + ......
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--~------~~~~~~ 76 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR--I------TSAYYR 76 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC--C------CHHHHT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh--h------hHHHHh
Confidence 478999999999999999999997654444444445566777888765 677899999754311 1 112234
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.+|.+++|+|++..........+...+.... ....|+++|+||+|+..
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 77 GAVGALLVYDIAKHLTYENVERWLKELRDHA---DSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---CTTCEEEEEEECTTCGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEECccccc
Confidence 5899999999976432222222222222221 12358999999999854
No 166
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.54 E-value=8.4e-14 Score=159.52 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCe----------------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR---------------------------------------- 335 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t---------------------------------------- 335 (596)
+.++|+|+|.+|+|||||+|+|+|..+.+.....+|..++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4589999999999999999999998765433333331110
Q ss_pred --------------eEEEEECC----ceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHH
Q 007599 336 --------------LKSVVLPS----GKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTV 397 (596)
Q Consensus 336 --------------~~~i~l~~----~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v 397 (596)
...+.++. ..+.++||||+.... . ....+...+..+|++++|+|++++........+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--~---~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l 222 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--A---RNELSLGYVNNCHAILFVMRASQPCTLGERRYL 222 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--T---CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--h---HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence 00122222 258899999986421 1 123345566789999999999887554444333
Q ss_pred HHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 398 LQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 398 ~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+.+... ..|+++|+||+|+...
T Consensus 223 ~~~l~~~------~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 223 ENYIKGR------GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHTTTS------CCCEEEEEECGGGGGG
T ss_pred HHHHHhh------CCCEEEEEECcccccc
Confidence 3333222 2489999999998654
No 167
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.53 E-value=1.9e-14 Score=161.90 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc---------------ccccccceecCeeEEEEECC--c---eeEeeecccee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---------------SDARLFATLDPRLKSVVLPS--G---KVLLSDTVGFI 355 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~---------------~~~~~f~Tld~t~~~i~l~~--~---~i~liDTpG~i 355 (596)
++++|+|+|+.|+|||||+++|+..... .+...+.|+......+.+.. + .+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4689999999999999999999863211 11124456665555666642 2 78899999997
Q ss_pred eccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 356 SDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 356 ~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+. ......+..+|.+++|+|++++...+.... +..+...++ |+|+|+||+|+.+.
T Consensus 83 dF~--------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~~~i------piIvViNKiDl~~a 138 (599)
T 3cb4_D 83 DFS--------YEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAMEMDL------EVVPVLNKIDLPAA 138 (599)
T ss_dssp GGH--------HHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHHTTC------EEEEEEECTTSTTC
T ss_pred HHH--------HHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHHCCC------CEEEeeeccCcccc
Confidence 541 122334566999999999998754444333 333444443 89999999999764
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.53 E-value=5.9e-15 Score=161.31 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC--Ccc-----------------------------cccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD--LFS-----------------------------DARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~--v~~-----------------------------~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|++|+|||||+|+|++.. +.. +...+.|++.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 45789999999999999999998641 110 01245677777666666555
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHH------HHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEE------HRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~------~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.+|||||+..+ ...+...+..+|++++|+|++++..+. +.......+..+++ .++|+|+
T Consensus 86 ~~~iiDtPGh~~f--------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v-----~~iivvi 152 (458)
T 1f60_A 86 QVTVIDAPGHRDF--------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV-----RQLIVAV 152 (458)
T ss_dssp EEEEEECCCCTTH--------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC-----CEEEEEE
T ss_pred eEEEEECCCcHHH--------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCC-----CeEEEEE
Confidence 9999999998643 233445567899999999998653220 33334455556664 2489999
Q ss_pred ecCCCCC
Q 007599 419 NKIDYHD 425 (596)
Q Consensus 419 NKiDlv~ 425 (596)
||+|+.+
T Consensus 153 NK~Dl~~ 159 (458)
T 1f60_A 153 NKMDSVK 159 (458)
T ss_dssp ECGGGGT
T ss_pred Ecccccc
Confidence 9999974
No 169
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.53 E-value=5.2e-15 Score=143.72 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=74.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+++|.+|+|||||+|+|++...... ...++.......+.+.+. .+.+|||||+..+. .+ ....+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~~------~~~~~~ 98 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPEN-YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--NV------RPLSYP 98 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT--TT------GGGGCT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh--HH------HHhhcc
Confidence 47899999999999999999998654322 222222222334444443 78999999985431 11 111245
Q ss_pred hcCEEEEEEeCCCCChHHHH-HHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 375 EADLLVHVLDCTAPNLEEHR-TTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~-~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+|++++|+|++++...... ..+...+.... ...|+|+|+||+|+.+.
T Consensus 99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGGC
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEEechhhccc
Confidence 69999999999875322222 22333343321 23599999999998653
No 170
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.53 E-value=2.7e-14 Score=163.91 Aligned_cols=126 Identities=23% Similarity=0.266 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCccccccccee-------------------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL------------------------------------------- 332 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tl------------------------------------------- 332 (596)
..|.|+++|++|||||||+|+|+|..+.+.....+|.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 5799999999999999999999998753322222222
Q ss_pred --------cCeeEEEEECCc-eeEeeeccceeec----cchhhHHHHHHhHHHH--HhcCEEEEEEeCCCCChHHHHHHH
Q 007599 333 --------DPRLKSVVLPSG-KVLLSDTVGFISD----LPLQLVDAFHATLEEV--VEADLLVHVLDCTAPNLEEHRTTV 397 (596)
Q Consensus 333 --------d~t~~~i~l~~~-~i~liDTpG~i~~----lp~~lv~af~~tl~e~--~~aDliL~VvDas~~~~~~~~~~v 397 (596)
++....+..++. ++.++||||+... .|.+....+....... ..+|++++|+|++.+........+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 222233444444 7899999999762 2444333443333322 368999999999876433332223
Q ss_pred HHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 398 LQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 398 ~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+.+...+ .|+|+|+||+|+++..
T Consensus 210 l~~L~~~g------~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 210 AKEVDPQG------QRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHCTTC------SSEEEEEECTTSSCTT
T ss_pred HHHHHhcC------CCEEEEEeCcccCCcc
Confidence 33333222 4999999999998654
No 171
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.52 E-value=3.8e-14 Score=146.81 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC-CcccccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~-v~~~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
.+|+++|.+|+|||||+|+|++.. ......+++|.+.....+.+.++ .+.+|||||+....+..+. ......+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---~~~~~~~~~ 80 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFT---KQKDHIFQM 80 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHT---TTHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhh---hHHHHHhcc
Confidence 689999999999999999998864 34456778888888888777555 8999999998643111100 112334467
Q ss_pred cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 376 ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 376 aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+|++++|+|++++........+.+++..+... ....|+++|+||+|+...
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCH
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccch
Confidence 99999999999876555554444445443210 123599999999999764
No 172
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=3.7e-14 Score=140.62 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccc--cceecCeeEEEEECCceeEeeeccceeeccc--hhhHHHHHHhH-
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARL--FATLDPRLKSVVLPSGKVLLSDTVGFISDLP--LQLVDAFHATL- 370 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~--f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp--~~lv~af~~tl- 370 (596)
..++|+|+|++|+|||||+|+|+|........+ ++|..+....+.+.+..+.+|||||+..... ......+...+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999999877665555 6777777777888777999999999864311 11222332222
Q ss_pred HHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 371 EEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 371 ~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
.....+|++++|+|+++.. ......+..+++.++.. ...|+|+|+||+|++.....
T Consensus 108 ~~~~~~~~~l~v~d~~~~~-~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYT-EEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HTTTCCSEEEEEEETTCCS-SHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC-----
T ss_pred hcCCCCcEEEEEeeCCCCC-HHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccH
Confidence 2234579999999997643 34445555555444321 12489999999999876443
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.52 E-value=8.4e-15 Score=160.46 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-c------------------------------ccccccceecCeeEEEEECCc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-F------------------------------SDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~------------------------------~~~~~f~Tld~t~~~i~l~~~ 344 (596)
...+|+++|++|+|||||+++|+.... . .+...+.|++.....+.+.+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 357899999999999999999974211 0 011245566666666666655
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChH------HHHHHHHHHHHHcCCCcccCCc-EEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLE------EHRTTVLQVLQQVGVSEEKLKN-MIEV 417 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~------~~~~~v~~iL~~lgi~~~~~~P-iIvV 417 (596)
.+.+|||||+..+ ...+...+..+|++++|+|++++.++ .+.......+..+++ | +|+|
T Consensus 122 ~~~iiDtPGh~~f--------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~v------p~iivv 187 (467)
T 1r5b_A 122 RFSLLDAPGHKGY--------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGI------NHLVVV 187 (467)
T ss_dssp EEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTC------SSEEEE
T ss_pred EEEEEECCCcHHH--------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCC------CEEEEE
Confidence 8999999999754 22344556779999999999886321 233334455566665 5 8999
Q ss_pred EecCCCCC
Q 007599 418 WNKIDYHD 425 (596)
Q Consensus 418 lNKiDlv~ 425 (596)
+||+|+.+
T Consensus 188 iNK~Dl~~ 195 (467)
T 1r5b_A 188 INKMDEPS 195 (467)
T ss_dssp EECTTSTT
T ss_pred EECccCCC
Confidence 99999965
No 174
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.51 E-value=2.2e-14 Score=135.95 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC-Ccccccccce--ecCeeEEEEE---C-Cc-eeEeeeccceeeccchhhHHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFAT--LDPRLKSVVL---P-SG-KVLLSDTVGFISDLPLQLVDAFHAT 369 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~-v~~~~~~f~T--ld~t~~~i~l---~-~~-~i~liDTpG~i~~lp~~lv~af~~t 369 (596)
.+|+|+|.+|||||||+|+|++.. ...... ..| .+.....+.+ . .. .+.+|||+|+..+. .+ .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~-~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~ 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ-SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY--ST------H 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHHHH--TT------S
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCc-ceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHH--Hh------h
Confidence 579999999999999999999853 111111 112 2211112211 1 12 78899999975321 11 1
Q ss_pred HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 370 LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 370 l~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
...+..+|++++|+|++++. .....+..++..+... ....|+|+|.||+|+.+.
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~--~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQ--AEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCH--HHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCH
T ss_pred HHHccCCcEEEEEEeCCcch--hHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccc
Confidence 22345689999999998751 2223333444432110 113589999999998654
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.50 E-value=1.1e-13 Score=133.06 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc--ccccccceecCeeEEEEECCceeEeeeccceeec-cchhhHHHHHHh---
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF--SDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD-LPLQLVDAFHAT--- 369 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~--~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~-lp~~lv~af~~t--- 369 (596)
...+|+|+|++|||||||+|+|+|.... +....+.|.. ...+.+.+ .+.++||||+... .+......+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 3478999999999999999999987521 1222233322 12333333 6789999998531 111111222222
Q ss_pred -HHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 370 -LEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 370 -l~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+.....++.+++|+|++.+... ....+..++...++ |+++|.||+|+.+..
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~------~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVDSNI------AVLVLLTKADKLASG 153 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHTTC------CEEEEEECGGGSCHH
T ss_pred HHHhhhcccEEEEEEECCCCCch-hHHHHHHHHHHcCC------CeEEEEecccCCCch
Confidence 2222468899999999876432 22345566665554 889999999987653
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.49 E-value=4.7e-14 Score=166.60 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC------C----------cccccccceecCeeEEEEECCceeEeeeccceeeccc
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD------L----------FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP 359 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~------v----------~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp 359 (596)
...+|+++|++|+|||||+++|++.. . ..+...+.|++.....+...+..+.+|||||+..+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF-- 372 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY-- 372 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH--
Confidence 45789999999999999999998731 0 01123455655544444433348999999999643
Q ss_pred hhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCc-EEEEEecCCCCC
Q 007599 360 LQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKN-MIEVWNKIDYHD 425 (596)
Q Consensus 360 ~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~P-iIvVlNKiDlv~ 425 (596)
...+...+..+|++++|+|++++...+..+ .+..+...++ | +|+|+||+|+.+
T Consensus 373 ------~~~mi~gas~AD~aILVVDAtdGv~~QTrE-hL~ll~~lgI------P~IIVVINKiDLv~ 426 (1289)
T 3avx_A 373 ------VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLGRQVGV------PYIIVFLNKCDMVD 426 (1289)
T ss_dssp ------HHHHHHTSCCCSEEEEEEETTTCSCTTHHH-HHHHHHHHTC------SCEEEEEECCTTCC
T ss_pred ------HHHHHHHHhhCCEEEEEEcCCccCcHHHHH-HHHHHHHcCC------CeEEEEEeeccccc
Confidence 233445567799999999999875444333 3456666665 6 799999999975
No 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.49 E-value=5e-14 Score=156.50 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeE--------EEEECC---c-eeEeeeccceeeccchhhH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLK--------SVVLPS---G-KVLLSDTVGFISDLPLQLV 363 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~--------~i~l~~---~-~i~liDTpG~i~~lp~~lv 363 (596)
...+|+++|.+|||||||+|+|++....... ..|...... .+.+.. + .+.++||||..... .+
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~--~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~--~~- 114 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKE--SQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH--AS- 114 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT--TT-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH--HH-
Confidence 4589999999999999999999997532111 112222111 122222 2 79999999965431 11
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 364 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 364 ~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
....+..+|++++|+|++.. +....+...+...+- ..|+|+|+||+|+...
T Consensus 115 -----~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~----~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 115 -----HQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG----KSPVIVVMNKIDENPS 165 (535)
T ss_dssp -----CHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS----SCCEEEEECCTTTCTT
T ss_pred -----HHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC----CCCEEEEEECCCcccc
Confidence 11224569999999999764 333444455555442 3599999999998654
No 178
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.49 E-value=1.6e-13 Score=131.19 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc--eeEeeeccceeeccchhhHHHHHHhHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG--KVLLSDTVGFISDLPLQLVDAFHATLEEVV 374 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~--~i~liDTpG~i~~lp~~lv~af~~tl~e~~ 374 (596)
..+|+|+|++|||||||+|+|++........+..+.+...+.+.+.+. .+.++||+|+..... + ......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--~------~~~~~~ 100 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA--I------TSAYYR 100 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC--C------CHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh--h------hHHHhh
Confidence 478999999999999999999997655445555556666778888765 556799999864321 1 112234
Q ss_pred hcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 375 EADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 375 ~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
.++.+++|+|.+.... ...+..++..+.-......|+++|+||+|+.+
T Consensus 101 ~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 101 GAVGALLVYDIAKHLT---YENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp TCCEEEEEEETTCHHH---HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 5889999999876422 22222233222100112358999999999854
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.47 E-value=5.4e-13 Score=134.66 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=86.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHH-
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEV- 373 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~- 373 (596)
...+|+++|++|+|||||+|+|++... ......++|.......+.+.+..+.+|||||+..+... ...+...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~--~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYV--NHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEE--CHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccc--hHHHHHHHHHHH
Confidence 348999999999999999999999875 45666777888877777776669999999999764221 11111111111
Q ss_pred --HhcCEEEEEEeCCCCChHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCCcc
Q 007599 374 --VEADLLVHVLDCTAPNLEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 374 --~~aDliL~VvDas~~~~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
..+|++++|+|++..........+.+.+... +- ....|+++|+||+|+.+.+
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGK--EIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECTTCCCST
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhch--hhhcCEEEEEeCcccCCCC
Confidence 2689999998876543333333444444443 32 1224899999999997544
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.47 E-value=6.2e-14 Score=147.87 Aligned_cols=125 Identities=25% Similarity=0.285 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCe----------------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR---------------------------------------- 335 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t---------------------------------------- 335 (596)
..|.|+|+|.+|||||||+|+|+|..+........|..|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999997653211111111111
Q ss_pred -----------eEEEEECCc-eeEeeeccceeecc----chhhHHHHHHhH-HHHHh-cCEEEEEEeCCCCChHHHHHHH
Q 007599 336 -----------LKSVVLPSG-KVLLSDTVGFISDL----PLQLVDAFHATL-EEVVE-ADLLVHVLDCTAPNLEEHRTTV 397 (596)
Q Consensus 336 -----------~~~i~l~~~-~i~liDTpG~i~~l----p~~lv~af~~tl-~e~~~-aDliL~VvDas~~~~~~~~~~v 397 (596)
.-.+..++. .+.+|||||+...- |.+..+.+.... ..+.. .+++++|+|++.+..... .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence 011222323 79999999986421 334333343322 22323 456777888776422222 1
Q ss_pred HHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 398 LQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 398 ~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
..+++.+.- ...|+|+|+||+|+.+.
T Consensus 187 ~~i~~~~~~---~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 187 LKVAKEVDP---QGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHHCT---TCTTEEEEEECGGGSCT
T ss_pred HHHHHHhCc---CCCceEEEeccccccCc
Confidence 234444432 23589999999999764
No 181
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=3.7e-13 Score=130.38 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
..+.|+++|++|+|||||+|+|++...... ..+..++... .+....+.+|||||+.... .....+. ......
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--~~~~~~~--~~~~~~ 82 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYDGSGVTLVDFPGHVKLR--YKLSDYL--KTRAKF 82 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-TGGGSSCEEEECCCCGGGT--HHHHHHH--HHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-EeeCceEEEEECCCcHHHH--HHHHHHH--Hhcccc
Confidence 468999999999999999999998753221 0111121110 0122289999999996431 1111111 111234
Q ss_pred cCEEEEEEeCC-CC-ChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 376 ADLLVHVLDCT-AP-NLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 376 aDliL~VvDas-~~-~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
+|++++|+|++ .+ ........+.+++...........|+++|+||+|+.....
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999998 43 2333444444555432110112359999999999987654
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.45 E-value=7e-13 Score=139.97 Aligned_cols=128 Identities=19% Similarity=0.278 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCe----------------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR---------------------------------------- 335 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t---------------------------------------- 335 (596)
..|.|+|+|.+|||||||+|+|+|..+........|..++
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 5789999999999999999999997653322222221111
Q ss_pred --------------eEEEEECCc-eeEeeeccceeecc----chhhHHHH-HHhHHHHHhcCEEEEEEeCCCCChHHHHH
Q 007599 336 --------------LKSVVLPSG-KVLLSDTVGFISDL----PLQLVDAF-HATLEEVVEADLLVHVLDCTAPNLEEHRT 395 (596)
Q Consensus 336 --------------~~~i~l~~~-~i~liDTpG~i~~l----p~~lv~af-~~tl~e~~~aDliL~VvDas~~~~~~~~~ 395 (596)
...+..+.. .+.+|||||+.... +....... ..+...+..+|++++|+|.+...... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 111222223 78999999997642 22232222 23455577899999999875433221 2
Q ss_pred HHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 396 TVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 396 ~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
.+..++..+.- ...|+|+|+||+|+++...
T Consensus 191 ~~~~l~~~~~~---~~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 191 DAIKISREVDP---SGDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp HHHHHHHHSCT---TCTTEEEEEECGGGCCTTC
T ss_pred HHHHHHHHhcc---cCCCEEEEEeCCccCCCcc
Confidence 23455555543 2348999999999987543
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.43 E-value=1.6e-13 Score=144.20 Aligned_cols=147 Identities=15% Similarity=0.026 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHCC------CCc-ccc
Q 007599 254 LQLQRRRILERRSHLLSQIEEVRRTRAVQRAARRRHGGSDGRGLATVAVVGYTNAGKSTLVSALSDS------DLF-SDA 326 (596)
Q Consensus 254 ~e~~rr~i~~ri~~l~~~L~~~~~~r~~~r~~r~r~~~~~~~~~~~VaLVG~tgAGKSTLLNaLtg~------~v~-~~~ 326 (596)
++.+||.|.+.|..++.........+...+..-... ..+..+|+++|++|+|||||+|+|++. .+. ...
T Consensus 17 ~~~~r~~l~~~i~~ie~~~~~~~~~~~~~~~~l~~~----~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 17 RQGERATLAQAMTLVESRHPRHQALSTQLLDAIMPY----CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHGGG----CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HcCCHHHHHhhhhHhhcCCchhhhHHHHHHHhCCcc----cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 445788888888876654433332222222211110 125689999999999999999999742 211 111
Q ss_pred cccceec-----------------CeeEEEE----------------------ECCceeEeeeccceeeccchhhHHHHH
Q 007599 327 RLFATLD-----------------PRLKSVV----------------------LPSGKVLLSDTVGFISDLPLQLVDAFH 367 (596)
Q Consensus 327 ~~f~Tld-----------------~t~~~i~----------------------l~~~~i~liDTpG~i~~lp~~lv~af~ 367 (596)
.++.|.. +...... +.+.+++++||||+... ..
T Consensus 93 d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~--~~------ 164 (341)
T 2p67_A 93 DPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS--ET------ 164 (341)
T ss_dssp CCC---------------CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH--HH------
T ss_pred cCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccch--HH------
Confidence 1111110 0000000 11238999999998632 11
Q ss_pred HhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 368 ATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 368 ~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.....+|++++|+|++.+.. ...+.. ... ..|.++|+||+|+.+.
T Consensus 165 ---~~~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~------~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 165 ---EVARMVDCFISLQIAGGGDD---LQGIKK--GLM------EVADLIVINKDDGDNH 209 (341)
T ss_dssp ---HHHTTCSEEEEEECC---------CCCCH--HHH------HHCSEEEECCCCTTCH
T ss_pred ---HHHHhCCEEEEEEeCCccHH---HHHHHH--hhh------cccCEEEEECCCCCCh
Confidence 11367999999999875421 100000 001 1378999999998754
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.42 E-value=2.6e-13 Score=143.32 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=25.4
Q ss_pred CCEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 537 APDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 537 ~~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
.|++++||.+|.||++|++.|.+.+.+.
T Consensus 258 ~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 258 PPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp CCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4699999999999999999999988763
No 185
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.1e-13 Score=125.98 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHh
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVE 375 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~ 375 (596)
..++|+++|++|||||||+|+|++...... ..+..++... .+.+..+.+|||||+..... .....+ ...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-~~~~~~---~~~~~~ 118 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYDGSGVTLVDFPGHVKLRY-KLSDYL---KTRAKF 118 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSC-CHHHHH---HHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCceee-eecCCeEEEEECCCCchHHH-HHHHHH---Hhhccc
Confidence 458999999999999999999998753220 1111121111 11233889999999965421 111111 122345
Q ss_pred cCEEEEEEeCC-CCCh-HHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 376 ADLLVHVLDCT-APNL-EEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 376 aDliL~VvDas-~~~~-~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+|++++|+|++ .+.. ......+..++...........|+++|+||+|+.+....
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 89999999998 3211 111122333333221101123599999999999876543
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.41 E-value=2.9e-12 Score=129.70 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeeccc--hhhHHHHHHhHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDLP--LQLVDAFHATLEE 372 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp--~~lv~af~~tl~e 372 (596)
..++|+++|.+|+|||||+|+|++..+ ...+..++|.+.....+...+..+.+|||||+..... ......+... ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~-~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF-LL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH-TT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH-hh
Confidence 358999999999999999999999875 3455566666666555655544899999999975421 1111111110 01
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHH-cCCCcccCCcEEEEEecCCCCCccc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQ-VGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~-lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
...+|++++|+|++..........+...+.. ++.. ...|+|+|+||+|+.+.+.
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCGGG
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCcCC
Confidence 2358999999887653333222233344433 3321 1248999999999976553
No 187
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.37 E-value=6.8e-13 Score=128.96 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.1
Q ss_pred CCEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 537 APDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 537 ~~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
+|++++||.+|.|+++|++.|.+.+..+
T Consensus 188 ~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 188 AKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 4599999999999999999999988765
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=1.6e-12 Score=139.69 Aligned_cols=89 Identities=26% Similarity=0.300 Sum_probs=49.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEE---------------------CC---ceeEeeeccce
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL---------------------PS---GKVLLSDTVGF 354 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l---------------------~~---~~i~liDTpG~ 354 (596)
+|+|+|.+|+|||||+|+|++....+.+.+|+|.++..+.+.+ .+ .++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6999999999999999999998766778899999998876432 22 17899999999
Q ss_pred eeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCC
Q 007599 355 ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAP 388 (596)
Q Consensus 355 i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~ 388 (596)
..... .........+..+..+|++++|+|++++
T Consensus 82 ~~~a~-~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAH-EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccchh-hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 74211 0000012223445779999999999875
No 189
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.32 E-value=2.6e-12 Score=143.41 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc---ccccccceecCee------------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF---SDARLFATLDPRL------------------------------------ 336 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~---~~~~~f~Tld~t~------------------------------------ 336 (596)
+.+.|+|+|.+|+|||||+|+|+|..+. +...+.++.....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 5689999999999999999999998753 3333332211000
Q ss_pred EEEEECC---ceeEeeeccceeeccchhhHHH--H-HHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCccc
Q 007599 337 KSVVLPS---GKVLLSDTVGFISDLPLQLVDA--F-HATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEK 410 (596)
Q Consensus 337 ~~i~l~~---~~i~liDTpG~i~~lp~~lv~a--f-~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~ 410 (596)
..+.+++ ..+.++||||+....+..+... | ..+...+..+|++++|+|+++........ .++..+...
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~---~~l~~l~~~--- 217 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS---EAIGALRGH--- 217 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH---HHHHHTTTC---
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH---HHHHHHHhc---
Confidence 0111111 2588999999975221111110 1 22334456799999999998743333333 334444321
Q ss_pred CCcEEEEEecCCCCCcccc
Q 007599 411 LKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 411 ~~PiIvVlNKiDlv~~~~~ 429 (596)
..|+++|+||+|+++..+.
T Consensus 218 ~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp GGGEEEEEECGGGSCHHHH
T ss_pred CCCEEEEEECCCccCHHHH
Confidence 2489999999999876544
No 190
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.32 E-value=6e-12 Score=132.26 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=24.4
Q ss_pred CEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 538 PDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 538 ~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
|++++||.+|.|+++|++.|.+.++..
T Consensus 236 ~vl~~Sal~g~gi~~L~~~I~~~~~~~ 262 (337)
T 2qm8_A 236 PVVTISGLHGKGLDSLWSRIEDHRSKL 262 (337)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999987643
No 191
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.5e-12 Score=130.94 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCEEEccCCCCCCHHHHHHHHHHHHh
Q 007599 537 APDVKISARTGVGLQELLEIIDERLK 562 (596)
Q Consensus 537 ~~vv~vSA~tG~Gi~eLl~~I~~~~~ 562 (596)
++++.+||.+|.||++|++.|.+.+.
T Consensus 229 ~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 229 LQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35999999999999999999987664
No 192
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=4.5e-12 Score=134.38 Aligned_cols=125 Identities=19% Similarity=0.201 Sum_probs=64.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCccccccc-------ceecCeeEEE--EECCc--eeEeeeccceee---------
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLF-------ATLDPRLKSV--VLPSG--KVLLSDTVGFIS--------- 356 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f-------~Tld~t~~~i--~l~~~--~i~liDTpG~i~--------- 356 (596)
...|+|+|++|+|||||+|+|.+.......... .|.......+ ...+. .+.+|||||+..
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 367999999999999999999887544332211 2222111122 22222 688999999932
Q ss_pred ccchhhHHHHHHhHHHHHhc----------CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 357 DLPLQLVDAFHATLEEVVEA----------DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 357 ~lp~~lv~af~~tl~e~~~a----------DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+...+...|...+.....+ ++++++++.+......... .++..+. ...|+|+|+||+|+...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~---~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH---HHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH---HHHHHhc----cCCCEEEEEECCCCCCH
Confidence 22223333444444443322 4677877753222222221 3444443 23599999999999765
Q ss_pred cc
Q 007599 427 EM 428 (596)
Q Consensus 427 ~~ 428 (596)
..
T Consensus 190 ~e 191 (361)
T 2qag_A 190 KE 191 (361)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=2.4e-11 Score=128.94 Aligned_cols=87 Identities=28% Similarity=0.449 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC-----------------ceeEeeeccceeeccch
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS-----------------GKVLLSDTVGFISDLPL 360 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~-----------------~~i~liDTpG~i~~lp~ 360 (596)
.+|+|+|.+|+|||||+|+|++....+.+++|+|+++..+.+.+++ ..+.++||||+......
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 4799999999999999999999887788899999999999888876 25899999999854211
Q ss_pred --hhHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007599 361 --QLVDAFHATLEEVVEADLLVHVLDCTA 387 (596)
Q Consensus 361 --~lv~af~~tl~e~~~aDliL~VvDas~ 387 (596)
.+. ...+..+..+|+++||+|+++
T Consensus 83 ~~gl~---~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLG---NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGT---CCHHHHHHTCSEEEEEEECSC
T ss_pred cchHH---HHHHHHHHhcCeEEEEEecCC
Confidence 111 123456778999999999986
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.22 E-value=1.2e-11 Score=123.50 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 537 APDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 537 ~~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
.+++++||.+|.|+++|++.|.+.+.+-
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHhccc
Confidence 3589999999999999999999988764
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.16 E-value=4.5e-11 Score=116.42 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.9
Q ss_pred CCEEEccCCCCCCHHHHHHHHHHHHhhc
Q 007599 537 APDVKISARTGVGLQELLEIIDERLKTL 564 (596)
Q Consensus 537 ~~vv~vSA~tG~Gi~eLl~~I~~~~~~~ 564 (596)
.|++++||.+|.|+++|++.|.+.+.++
T Consensus 198 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 198 AEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 4599999999999999999999888763
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.12 E-value=5.4e-11 Score=138.99 Aligned_cols=115 Identities=19% Similarity=0.141 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCc----------------ccccccceecCeeEEEEEC--------------C-c
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLF----------------SDARLFATLDPRLKSVVLP--------------S-G 344 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~----------------~~~~~f~Tld~t~~~i~l~--------------~-~ 344 (596)
..++|+|+|++|||||||+++|++.... .+...+.|+......+.+. + +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 3579999999999999999999864211 1112344555555555554 1 3
Q ss_pred -eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 345 -KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 345 -~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
.+.+|||||+..+.. .....+..+|.+++|+|++++...+. ..++..+...+ .|+|+|+||+|+
T Consensus 98 ~~i~liDTPG~~df~~--------~~~~~l~~aD~ailVvDa~~g~~~qt-~~~~~~~~~~~------~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS--------EVTAALRVTDGALVVVDTIEGVCVQT-ETVLRQALGER------IKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSCH--------HHHHHHHTCSEEEEEEETTTBSCHHH-HHHHHHHHHTT------CEEEEEEECHHH
T ss_pred ceEEEEECcCchhhHH--------HHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcC------CCeEEEEECCCc
Confidence 789999999986521 12344567999999999998754443 34444444444 389999999998
Q ss_pred CC
Q 007599 424 HD 425 (596)
Q Consensus 424 v~ 425 (596)
..
T Consensus 163 ~~ 164 (842)
T 1n0u_A 163 AL 164 (842)
T ss_dssp HH
T ss_pred ch
Confidence 74
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.12 E-value=9e-11 Score=124.82 Aligned_cols=87 Identities=31% Similarity=0.453 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC---------------------ceeEeeeccceee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS---------------------GKVLLSDTVGFIS 356 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~---------------------~~i~liDTpG~i~ 356 (596)
.+|+|+|.+|+|||||+|+|++....+.+.+|+|++++.+.+.+++ ..+.++||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 4699999999999999999999766677889999999988876643 2689999999986
Q ss_pred ccch--hhHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007599 357 DLPL--QLVDAFHATLEEVVEADLLVHVLDCTA 387 (596)
Q Consensus 357 ~lp~--~lv~af~~tl~e~~~aDliL~VvDas~ 387 (596)
.... .+... .+..+..+|+++||+|+++
T Consensus 82 ~a~~~~~lg~~---fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQ---FLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHH---HHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHH---HHHHHHhCCEEEEEEECCC
Confidence 4321 12222 3455678999999999985
No 198
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.00 E-value=1.2e-09 Score=114.39 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCCCCcc-cccccceecCeeEEEEECCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhc
Q 007599 299 TVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDPRLKSVVLPSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEA 376 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~f~Tld~t~~~i~l~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~a 376 (596)
+|.++|..|+|||||++++.+..... .....+|.......+ ... ++.+|||+|+.++....+ .+...+..+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l-----~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY-----DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH-----HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh-----hhhhhccCC
Confidence 37899999999999999988653211 112334554444443 233 899999999987531111 112235679
Q ss_pred CEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 377 DLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 377 DliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+++++|+|+++. .......+.+++..+.- .....|+++|.||+|+.+++
T Consensus 74 ~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 74 GALVYVIDSQDE-YINAITNLAMIIEYAYK-VNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp SEEEEECCCSSC-TTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCCSSCSH
T ss_pred CEEEEEEECCch-HHHHHHHHHHHHHHHhh-cCCCCcEEEEEECcccCchh
Confidence 999999999886 44555555555554311 01235899999999998754
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.98 E-value=3.3e-10 Score=121.32 Aligned_cols=89 Identities=24% Similarity=0.363 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc-----------------eeEeeeccceeeccc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG-----------------KVLLSDTVGFISDLP 359 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~-----------------~i~liDTpG~i~~lp 359 (596)
...|+|+|.+|+|||||||+|++..+.+.+.+|+|+++..+.+.+++. .+.++||||+.....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 367999999999999999999998887888999999999999887652 389999999976422
Q ss_pred hhhHHHH-HHhHHHHHhcCEEEEEEeCCC
Q 007599 360 LQLVDAF-HATLEEVVEADLLVHVLDCTA 387 (596)
Q Consensus 360 ~~lv~af-~~tl~e~~~aDliL~VvDas~ 387 (596)
. ...+ ...+..+..+|+++||+|+++
T Consensus 102 ~--~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 102 N--GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC--
T ss_pred h--hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 0111 123556778999999999975
No 200
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.95 E-value=5.7e-10 Score=123.10 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH------CCCCcc-cc-c-cccee----------cCeeEE-----------------E
Q 007599 296 GLATVAVVGYTNAGKSTLVSALS------DSDLFS-DA-R-LFATL----------DPRLKS-----------------V 339 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLt------g~~v~~-~~-~-~f~Tl----------d~t~~~-----------------i 339 (596)
...+|+++|++|||||||+++|+ |..+.. .. . ..+.. ...... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999 655321 11 0 00000 000000 0
Q ss_pred EECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcE-EEEE
Q 007599 340 VLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNM-IEVW 418 (596)
Q Consensus 340 ~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~Pi-IvVl 418 (596)
...+.+++|+||||.... ...+......... +..+|.+++|+|+..+.. ....+ ..+... .|+ ++|+
T Consensus 180 ~~~~~DvvIIDTpG~~~~-~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~--~~~~a-~~~~~~-------~~i~gvVl 247 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ-EDSLFEEMLQVAN-AIQPDNIVYVMDASIGQA--CEAQA-KAFKDK-------VDVASVIV 247 (504)
T ss_dssp HHTTCCEEEEEECCCCTT-CHHHHHHHHHHHH-HHCCSEEEEEEETTCCTT--HHHHH-HHHHHH-------HCCCCEEE
T ss_pred HHCCCcEEEEeCCCCccc-chhHHHHHHHHHh-hhcCceEEEEEecccccc--HHHHH-HHHHhh-------cCceEEEE
Confidence 002238999999998642 1233333322222 347999999999987632 22222 222221 153 8999
Q ss_pred ecCCCCCc
Q 007599 419 NKIDYHDE 426 (596)
Q Consensus 419 NKiDlv~~ 426 (596)
||+|....
T Consensus 248 NK~D~~~~ 255 (504)
T 2j37_W 248 TKLDGHAK 255 (504)
T ss_dssp ECTTSCCC
T ss_pred eCCccccc
Confidence 99998643
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.92 E-value=1.2e-09 Score=112.76 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCccccc-c------cceecCeeEEEEEC--Cc--eeEeeeccceeeccc-----h
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDAR-L------FATLDPRLKSVVLP--SG--KVLLSDTVGFISDLP-----L 360 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~-~------f~Tld~t~~~i~l~--~~--~i~liDTpG~i~~lp-----~ 360 (596)
...|+|+|++|||||||+|+|.|........ . ..|.......+.+. +. .+.++||+|+..... .
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 4788999999999999999999864332211 0 11211111122222 21 688999999832110 1
Q ss_pred hhHH----HHHHhHHHHHh----------cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 361 QLVD----AFHATLEEVVE----------ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 361 ~lv~----af~~tl~e~~~----------aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.+.. .+...+..+.. +++++++++.+........ .+++..+.- ..|+++|+||+|+...
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~---~~~l~~l~~----~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD---VAFMKAIHN----KVNIVPVIAKADTLTL 170 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH---HHHHHHHTT----TSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH---HHHHHHHHh----cCCEEEEEEeCCCCCH
Confidence 1111 11122222211 2346666654322122211 145555431 2489999999998764
No 202
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=2e-09 Score=115.34 Aligned_cols=88 Identities=28% Similarity=0.384 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCc-----------------eeEeeeccceeecc
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSG-----------------KVLLSDTVGFISDL 358 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~-----------------~i~liDTpG~i~~l 358 (596)
..+|+|+|++|||||||||+|+|..+ .+.+.+|+|++|..+.+.+++. .+.++||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 36899999999999999999999887 7889999999999999998862 47899999987543
Q ss_pred ch--hhHHHHHHhHHHHHhcCEEEEEEeCCC
Q 007599 359 PL--QLVDAFHATLEEVVEADLLVHVLDCTA 387 (596)
Q Consensus 359 p~--~lv~af~~tl~e~~~aDliL~VvDas~ 387 (596)
.. .+...| +..+..+|.+++|+|++.
T Consensus 100 s~~e~L~~~f---l~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAF---LSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHH---HHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence 21 122223 445667999999999875
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.78 E-value=1.4e-08 Score=109.65 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccc----cccceecCeeEEEEECCc---eeEeeeccceeeccch---------
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDA----RLFATLDPRLKSVVLPSG---KVLLSDTVGFISDLPL--------- 360 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~----~~f~Tld~t~~~i~l~~~---~i~liDTpG~i~~lp~--------- 360 (596)
.+.++|+|++|||||||+|.|+|..+...+ .+..+.. ..+.+.-..+ .+.++||+|+......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 356999999999999999999997532111 1111221 1122211222 6789999998643221
Q ss_pred hhHHHHHHhHHHHH----------hc--C-EEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 361 QLVDAFHATLEEVV----------EA--D-LLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 361 ~lv~af~~tl~e~~----------~a--D-liL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+...+...+.... .+ | ++++++|+.++....+ .++++.+.. ..|+|+|+||+|.+...
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~~----~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLDS----KVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTCS----CSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHhh----CCCEEEEEcchhccchH
Confidence 11122333333321 11 2 4667788877644333 245555541 25899999999999876
Q ss_pred cc
Q 007599 428 MG 429 (596)
Q Consensus 428 ~~ 429 (596)
+.
T Consensus 193 E~ 194 (427)
T 2qag_B 193 EL 194 (427)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.70 E-value=5.1e-08 Score=105.26 Aligned_cols=125 Identities=20% Similarity=0.219 Sum_probs=61.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCccccccccee--cCee--EEEEE--C-Cc---eeEeeeccceeeccc-----hh
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATL--DPRL--KSVVL--P-SG---KVLLSDTVGFISDLP-----LQ 361 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tl--d~t~--~~i~l--~-~~---~i~liDTpG~i~~lp-----~~ 361 (596)
...|+|+|++|||||||+|+|+|...........+. .++. ..+.+ . .+ .+.++||+|+..... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 367899999999999999999997642221111100 1111 11111 1 12 578999999965321 11
Q ss_pred hHHHHHHhHHH------------HHh--cCEEEEEEeCC-CCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 362 LVDAFHATLEE------------VVE--ADLLVHVLDCT-APNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 362 lv~af~~tl~e------------~~~--aDliL~VvDas-~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+...+...+.. +.. +++++++++.+ ++...... .++..+.- ..|+|+|+||+|++..
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~----~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE----KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT----TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc----cCcEEEEEEcccCccH
Confidence 11111111111 112 34566666554 33222221 34444431 2589999999999875
Q ss_pred ccc
Q 007599 427 EMG 429 (596)
Q Consensus 427 ~~~ 429 (596)
...
T Consensus 183 ~ev 185 (418)
T 2qag_C 183 EEC 185 (418)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.68 E-value=1.5e-09 Score=115.32 Aligned_cols=119 Identities=20% Similarity=0.109 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC------CCcccccccceecCeeEEEEECCceeEeeeccceeecc--chhhHHHHHHh
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS------DLFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDL--PLQLVDAFHAT 369 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~------~v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l--p~~lv~af~~t 369 (596)
..|+++|++|+|||||+|+|++. ...+...+++|.+... +.+ +..+.++||||+...- ...+... .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~-~~~~~liDtPG~~~~~~~~~~l~~~---~ 236 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPL-ESGATLYDTPGIINHHQMAHFVDAR---D 236 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EEC-STTCEEEECCSCCCCSSGGGGSCTT---T
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEe-CCCeEEEeCCCcCcHHHHHHHHhHH---H
Confidence 36999999999999999999986 3445666676665432 222 2358999999997431 1122111 2
Q ss_pred HHHH---HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 370 LEEV---VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 370 l~e~---~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
+..+ ...+.+++++|......... |..+........|+++|+||+|.+.....
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~-------l~~l~~l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGG-------LARLDYIKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETT-------TEEEEEEESSSEEEEEEECTTSCEEEEEG
T ss_pred HHHHhcccccCceEEEEcCCceEEECC-------EEEEEEccCCCceEEEEecCCcccccccH
Confidence 2223 56899999998732100000 00011111223589999999999876544
No 206
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.61 E-value=9.1e-08 Score=97.34 Aligned_cols=124 Identities=25% Similarity=0.248 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccc-------cccce-ecCeeEEEEECCc---eeEeeeccceeeccch-----h
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDA-------RLFAT-LDPRLKSVVLPSG---KVLLSDTVGFISDLPL-----Q 361 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~-------~~f~T-ld~t~~~i~l~~~---~i~liDTpG~i~~lp~-----~ 361 (596)
++++|+|++|||||||+|.|+|....... ....+ .....+.+.-..+ .+.++|++|+...... .
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999985322111 00011 1111111111111 6789999998543221 1
Q ss_pred hHH----HHHHhHHH-----------HHhcCEEEEEEeCC-CCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCC
Q 007599 362 LVD----AFHATLEE-----------VVEADLLVHVLDCT-APNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 362 lv~----af~~tl~e-----------~~~aDliL~VvDas-~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~ 425 (596)
+.. .+...+.. +..+++.++++|.. ++..... ..+...|... .++|+|+||+|.+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~~-------~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSKV-------VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHTT-------SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHhc-------CcEEEEEeccccCC
Confidence 111 11111111 11247788888854 5433333 2233333322 38999999999998
Q ss_pred cccc
Q 007599 426 EEMG 429 (596)
Q Consensus 426 ~~~~ 429 (596)
..+.
T Consensus 155 ~~e~ 158 (270)
T 3sop_A 155 LEEK 158 (270)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 207
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.60 E-value=1.5e-07 Score=101.45 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccc-cceecC-eeEEEEECC--ceeEeeeccceeeccchhhHHHHHHhHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARL-FATLDP-RLKSVVLPS--GKVLLSDTVGFISDLPLQLVDAFHATLEE 372 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~-f~Tld~-t~~~i~l~~--~~i~liDTpG~i~~lp~~lv~af~~tl~e 372 (596)
..+++|+|++|||||||+|+|+|......... ....+. ..+.+.-.. ..+.++|+||+... .......-.. ..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~-~~ 145 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEK-MK 145 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHH-TT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHHHHHHHHH-cC
Confidence 37999999999999999999999532111100 000000 011122112 16889999998531 1111111110 11
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+...+..++ ++..++ ..+...+...|...+ +|+++|+||.|++
T Consensus 146 L~~~~~~~~-lS~G~~--~kqrv~la~aL~~~~------~p~~lV~tkpdll 188 (413)
T 1tq4_A 146 FYEYDFFII-ISATRF--KKNDIDIAKAISMMK------KEFYFVRTKVDSD 188 (413)
T ss_dssp GGGCSEEEE-EESSCC--CHHHHHHHHHHHHTT------CEEEEEECCHHHH
T ss_pred CCccCCeEE-eCCCCc--cHHHHHHHHHHHhcC------CCeEEEEecCccc
Confidence 233455554 665432 344455556666655 3899999999874
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.60 E-value=3.9e-09 Score=112.15 Aligned_cols=122 Identities=19% Similarity=0.091 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC-------CcccccccceecCeeEEEEECCceeEeeeccceeecc--chhhHHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD-------LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISDL--PLQLVDAFHA 368 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~-------v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~l--p~~lv~af~~ 368 (596)
..|+++|++|+|||||+|+|++.. ..+...+++|.+... +.+.+ .+.++||||+...- ...+......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPLDE-ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EESSS-SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEecC-CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 369999999999999999999852 224555666655432 33322 48999999997531 1222222211
Q ss_pred hHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcccc
Q 007599 369 TLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEMG 429 (596)
Q Consensus 369 tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~~ 429 (596)
........+.+++++|......... |..+........|+++|+||+|.+.....
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~-------l~~~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSG-------LARFDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETT-------TEEEEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred HhccccccCceEEEEcCCCEEEEcc-------eEEEEEecCCCceEEEEecCccccccccH
Confidence 2111345788888988732110000 00011111123589999999999876543
No 209
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.45 E-value=3.1e-07 Score=94.01 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCC-CcccccccceecCeeEEEEECCceeEeeeccceee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSD-LFSDARLFATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~-v~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
....|+++|++|+|||||+|+|+|.. ..+.+.+++|.+... +.+ +..+.++||||+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCC
Confidence 45789999999999999999999977 456667777776642 333 34799999999974
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.40 E-value=4.7e-07 Score=101.58 Aligned_cols=60 Identities=22% Similarity=0.146 Sum_probs=44.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEE------CC-ceeEeeeccceee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL------PS-GKVLLSDTVGFIS 356 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l------~~-~~i~liDTpG~i~ 356 (596)
+..+|+|+|++|+|||||+|+|+|..... ...++|.+.+.+...+ .. ..+.++||||+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 46899999999999999999999986433 3444444555444433 12 3899999999975
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.30 E-value=7e-07 Score=96.77 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=65.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC------CCc-cccccc------------------------ceecCe-e--EEEE-E
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS------DLF-SDARLF------------------------ATLDPR-L--KSVV-L 341 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~------~v~-~~~~~f------------------------~Tld~t-~--~~i~-l 341 (596)
..+|+++|++|+||||+++.|.+. .+. +...++ .+.++. . ..+. +
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999863 211 100000 122221 0 0010 1
Q ss_pred CCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccC-CcEEEEEec
Q 007599 342 PSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKL-KNMIEVWNK 420 (596)
Q Consensus 342 ~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~-~PiIvVlNK 420 (596)
.+.+++++||||.... ...+...... ...+..+|.+++|+|+..+. .. ...+..++- .. ....+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~-~~~l~~~l~~-i~~~~~~d~vllVvda~~g~--~~----~~~~~~~~~---~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE-EKGLLEEMKQ-IKEITNPDEIILVIDGTIGQ--QA----GIQAKAFKE---AVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSS-HHHHHHHHHH-TTSSSCCSEEEEEEEGGGGG--GH----HHHHHHHHT---TSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccc-cHHHHHHHHH-HHHHhcCcceeEEeeccccH--HH----HHHHHHHhh---cccCCeEEEEeC
Confidence 2228999999998642 1222222221 22234689999999987542 11 122333321 01 137899999
Q ss_pred CCCCC
Q 007599 421 IDYHD 425 (596)
Q Consensus 421 iDlv~ 425 (596)
+|...
T Consensus 248 ~D~~~ 252 (432)
T 2v3c_C 248 LDGSA 252 (432)
T ss_dssp SSSCS
T ss_pred CCCcc
Confidence 99864
No 212
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.29 E-value=2e-06 Score=97.00 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCe----------------------------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPR---------------------------------------- 335 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t---------------------------------------- 335 (596)
..|.|+|+|++|||||||+++|+|..... +....|..+.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~-~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~ 122 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALPR-GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ 122 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCCC-CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence 56889999999999999999999973210 0000000000
Q ss_pred ---------------eEEEEECCc-eeEeeeccceee----ccchhhHHHHHHhHHHH-Hh-cCEEEEEEeCCCCChHHH
Q 007599 336 ---------------LKSVVLPSG-KVLLSDTVGFIS----DLPLQLVDAFHATLEEV-VE-ADLLVHVLDCTAPNLEEH 393 (596)
Q Consensus 336 ---------------~~~i~l~~~-~i~liDTpG~i~----~lp~~lv~af~~tl~e~-~~-aDliL~VvDas~~~~~~~ 393 (596)
.-.+..+.. +++++|.||+.. .++......+...+..+ .. ..+++.++.+.....
T Consensus 123 ~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--- 199 (608)
T 3szr_A 123 NAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--- 199 (608)
T ss_dssp HHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT---
T ss_pred HHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc---
Confidence 001122222 688999999753 22333333444444443 22 356666766543222
Q ss_pred HHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 394 RTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 394 ~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
...+..++..+.-. ..+.|+|+||+|++....
T Consensus 200 ~~~~l~la~~v~~~---g~rtI~VlTK~Dlv~~g~ 231 (608)
T 3szr_A 200 TTEALSMAQEVDPE---GDRTIGILTKPDLVDKGT 231 (608)
T ss_dssp TCHHHHHHHHHCSS---CCSEEEEEECGGGSSSSS
T ss_pred cHHHHHHHHHHhhc---CCceEEEecchhhcCccc
Confidence 12234555555322 237899999999997653
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.27 E-value=3.3e-07 Score=99.29 Aligned_cols=205 Identities=12% Similarity=0.070 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH------CCCCcc-c-c---------------cccc---eecCeeE-------EEE-E
Q 007599 296 GLATVAVVGYTNAGKSTLVSALS------DSDLFS-D-A---------------RLFA---TLDPRLK-------SVV-L 341 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLt------g~~v~~-~-~---------------~~f~---Tld~t~~-------~i~-l 341 (596)
...+|+++|++|+||||++..|+ |..+.. . + .... +...... .+. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999998 333211 0 0 0000 0000000 000 0
Q ss_pred --CCceeEeeeccceeec-cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 342 --PSGKVLLSDTVGFISD-LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 342 --~~~~i~liDTpG~i~~-lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
.+.+++++||||.... ....+...... +.....+|.+++|+|+..+. .....+...-+.++ +..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~-i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~-------~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKE-MYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASP-------IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHH-HHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCS-------SEEEEE
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHH-HHHhhCCcceEEEEeCccch--HHHHHHHHHhcccC-------CcEEEE
Confidence 1227899999997541 12233333333 22334579999999997541 22222222222333 578999
Q ss_pred ecCCCCCccccccccccc--ccccccccccccCCCccccccccccCCCCCCCCCCCCCCccchhhh------hhcccccc
Q 007599 419 NKIDYHDEEMGDVEYIDG--DDISNFSRAEDKDTTSEPVDVECIDNYGGDDADNNDGFVSEDLGES------MNKNHNDY 490 (596)
Q Consensus 419 NKiDlv~~~~~~~~~~~~--~~~~~~~sa~~~~gi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 490 (596)
||+|....... .-.+.. .....| ...++++++| +.|.|..+... +..+.+..
T Consensus 246 TKlD~~a~~G~-als~~~~~g~Pi~f--ig~Ge~v~dL-----------------~~f~p~~~~~~llg~gd~~~l~e~~ 305 (433)
T 3kl4_A 246 TKMDGTAKGGG-ALSAVVATGATIKF--IGTGEKIDEL-----------------ETFNAKRFVSRILGMGDIESILEKV 305 (433)
T ss_dssp ECGGGCSCHHH-HHHHHHHHTCEEEE--EECCSSSSCE-----------------EECCHHHHHHHHHCSSHHHHHHHHH
T ss_pred ecccccccchH-HHHHHHHHCCCEEE--EECCCChHhC-----------------ccCCHHHHHHHhcCCchHHHHHHHH
Confidence 99997643211 000000 001112 2235556555 22333333321 11122222
Q ss_pred chhhhccCCCCCCchhhhhccc-cCCCcccchhhhhhhcccCC
Q 007599 491 SDGWLLSGDEQDNVEEEFWNAA-EDQQPESTKDVCVMEKDSQS 532 (596)
Q Consensus 491 ~e~~~~e~d~~l~~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~ 532 (596)
.+.+-.+..+.++ .+|..++ +|+.....+.++..-.=|.+
T Consensus 306 ~~~~~~~~~~~~~--~k~~~g~~~f~~~d~~~q~~~~~kmg~~ 346 (433)
T 3kl4_A 306 KGLEEYDKIQKKM--EDVMEGKGKLTLRDVYAQIIALRKMGPL 346 (433)
T ss_dssp HHC---------------------CCHHHHHHHHHHHHHCCSS
T ss_pred HHhhhHHHHHHHH--HHHHcCCCCCCHHHHHHHHHHHHhccCH
Confidence 2222222223444 6777776 88888888888877777766
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.23 E-value=1.4e-06 Score=89.21 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=40.8
Q ss_pred hHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 362 LVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 362 lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+..+++...+.+..+|++++|+|++.|..... ..+.+++ ..+|.++|+||+|+++.
T Consensus 10 m~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l--------~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL--------KNKPRIMLLNKADKADA 65 (282)
T ss_dssp TTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC--------SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH--------CCCCEEEEEECcccCCH
Confidence 34567888889999999999999998754321 1233332 13599999999999763
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.09 E-value=7.6e-06 Score=88.81 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH------CCCCc--ccccc-cc------ee--cCeeEEEE------------------
Q 007599 296 GLATVAVVGYTNAGKSTLVSALS------DSDLF--SDARL-FA------TL--DPRLKSVV------------------ 340 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLt------g~~v~--~~~~~-f~------Tl--d~t~~~i~------------------ 340 (596)
...+|+++|++|+||||++..|+ |..+. ..+.. .+ +. ......+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998 33321 11100 00 00 00000000
Q ss_pred -ECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEe
Q 007599 341 -LPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 419 (596)
Q Consensus 341 -l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlN 419 (596)
..+.+++++||||.... ...+..... .+..+..+|.+++|+|+..+ ......+...-+.++ +..+|+|
T Consensus 179 ~~~~~DvVIIDTaGrl~~-d~~lm~el~-~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~-------i~gVIlT 247 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE-DKALIEEMK-QISNVIHPHEVILVIDGTIG--QQAYNQALAFKEATP-------IGSIIVT 247 (443)
T ss_dssp HHTTCSEEEEECCCCSSC-CHHHHHHHH-HHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCT-------TEEEEEE
T ss_pred HhCCCCEEEEECCCcccc-hHHHHHHHH-HHHHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCC-------CeEEEEE
Confidence 01127899999997542 223333332 23445568999999999764 222222222222222 5679999
Q ss_pred cCCCCCc
Q 007599 420 KIDYHDE 426 (596)
Q Consensus 420 KiDlv~~ 426 (596)
|+|....
T Consensus 248 KlD~~~~ 254 (443)
T 3dm5_A 248 KLDGSAK 254 (443)
T ss_dssp CCSSCSS
T ss_pred CCCCccc
Confidence 9998654
No 216
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.08 E-value=8e-06 Score=85.33 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=47.5
Q ss_pred EEECCceeEeeeccceeeccchhhHHHHHH-hHHHHHhcCEEEEEEeCC-------CCChHHHHHHHHHHHHHc-CCCcc
Q 007599 339 VVLPSGKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCT-------APNLEEHRTTVLQVLQQV-GVSEE 409 (596)
Q Consensus 339 i~l~~~~i~liDTpG~i~~lp~~lv~af~~-tl~e~~~aDliL~VvDas-------~~~~~~~~~~v~~iL~~l-gi~~~ 409 (596)
+.+.+-.+.+|||.|+.+ ++. .......++.+++|+|++ +............++..+ .-...
T Consensus 162 ~~~~~v~l~iwDtgGQe~---------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 162 FDLQSVIFRMVDVGGQRS---------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp EEETTEEEEEEEECCSHH---------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred EEeeceeeEEEEcCCchh---------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 344333788999999853 222 222345699999999776 222223334444455443 22222
Q ss_pred cCCcEEEEEecCCCCCc
Q 007599 410 KLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 410 ~~~PiIvVlNKiDlv~~ 426 (596)
...|+|+|+||+|+...
T Consensus 233 ~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEE 249 (327)
T ss_dssp TTCEEEEEEECHHHHHH
T ss_pred CCceEEEEEECchhhhh
Confidence 34699999999998653
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.01 E-value=3.6e-06 Score=85.11 Aligned_cols=57 Identities=30% Similarity=0.303 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC-cccccccceecCeeEEEEECCceeEeeeccceeec
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL-FSDARLFATLDPRLKSVVLPSGKVLLSDTVGFISD 357 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v-~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~i~~ 357 (596)
.+++++|++|+|||||+|+|++... .+...+++|.... .+.+ +..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcccC
Confidence 5899999999999999999999764 3445556665543 2222 347899999999753
No 218
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.76 E-value=4.3e-05 Score=80.19 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=46.2
Q ss_pred EEECCceeEeeeccceeeccchhhHHHHHH-hHHHHHhcCEEEEEEeCCC-------CChHHHHHHHHHHHHHc-CCCcc
Q 007599 339 VVLPSGKVLLSDTVGFISDLPLQLVDAFHA-TLEEVVEADLLVHVLDCTA-------PNLEEHRTTVLQVLQQV-GVSEE 409 (596)
Q Consensus 339 i~l~~~~i~liDTpG~i~~lp~~lv~af~~-tl~e~~~aDliL~VvDas~-------~~~~~~~~~v~~iL~~l-gi~~~ 409 (596)
+.+.+-.+.+|||+|+.+ ++. .......++.+++|+|+++ .........+..++..+ .-...
T Consensus 156 ~~~~~v~l~iwDtaGQe~---------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 156 FVVKDIPFHLIDVGGQRS---------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp EESSSCEEEEEECCSCHH---------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred EEeeeeeeccccCCCccc---------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 333333789999999853 222 2233567999999999972 11112223333333332 11122
Q ss_pred cCCcEEEEEecCCCCCc
Q 007599 410 KLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 410 ~~~PiIvVlNKiDlv~~ 426 (596)
...|+|+|+||+|+...
T Consensus 227 ~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp TTSEEEEEEECHHHHHH
T ss_pred CCCeEEEEEECchhhhh
Confidence 34599999999998653
No 219
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.75 E-value=3e-05 Score=79.85 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=42.4
Q ss_pred ccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 351 TVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 351 TpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
+.|+|..+......-.+ ..+.++|.+++|+|+++|. .......+...+...+ .|+|+|+||+|+.+..
T Consensus 58 ~~g~I~~i~er~~~l~r---~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~------~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 58 NTFAIEEVEERKNLLIR---PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFK------VEPVIVFNKIDLLNEE 126 (302)
T ss_dssp TEEEEEEECCCSCEEET---TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTT------CEEEEEECCGGGCCHH
T ss_pred CeEEEEeeCChHHHHhH---HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCC------CCEEEEEEcccCCCcc
Confidence 67877654332111111 2367799999999999874 3333333334444433 4899999999998653
No 220
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.74 E-value=1.4e-05 Score=84.23 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=50.7
Q ss_pred eeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCCh-------HHHHHHHHHHHHHcCC-
Q 007599 335 RLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNL-------EEHRTTVLQVLQQVGV- 406 (596)
Q Consensus 335 t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~-------~~~~~~v~~iL~~lgi- 406 (596)
....+.+.+-.+.+|||+|+.+.-.. .......++.+++|+|+++.+. ......+..++..+--
T Consensus 184 ~~~~~~~~~~~l~iwDt~GQe~~r~~--------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 184 VETHFTFKDLHFKMFDVGGQRSERKK--------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGG--------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEEEeeCCeeEEEEeCCCchhhhHH--------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 33455555448999999998643111 1122356999999999987321 1233444455554321
Q ss_pred CcccCCcEEEEEecCCCCC
Q 007599 407 SEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 407 ~~~~~~PiIvVlNKiDlv~ 425 (596)
......|+|+|+||+|+..
T Consensus 256 ~~~~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLFE 274 (353)
T ss_dssp GGGTTSEEEEEEECHHHHH
T ss_pred ccccCCcEEEEEECcCchh
Confidence 1223469999999999854
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.74 E-value=3.3e-05 Score=79.33 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=41.7
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCC-hHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPN-LEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~-~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
.+.+||| +.++- .+ ....+..+|++++|+|++++. .......+...+... ..|+|+|+||+|+
T Consensus 64 ~~~iwD~--qer~~--~l------~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~------~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRKN--LL------TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN------ELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCSC--EE------TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT------TCEEEEEECCGGG
T ss_pred eEEEEEE--ccccc--ee------eccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC------CCCEEEEEeHHHc
Confidence 7889999 33221 11 112356799999999999874 333333333333332 2489999999998
Q ss_pred CCc
Q 007599 424 HDE 426 (596)
Q Consensus 424 v~~ 426 (596)
.+.
T Consensus 128 ~~~ 130 (301)
T 1u0l_A 128 YDE 130 (301)
T ss_dssp CCH
T ss_pred CCc
Confidence 653
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.73 E-value=6.1e-05 Score=78.65 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=63.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcc-cccccceecC----------------eeEEEE-------------------
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFS-DARLFATLDP----------------RLKSVV------------------- 340 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~-~~~~f~Tld~----------------t~~~i~------------------- 340 (596)
..+++++|++|||||||++.|++..... ....+...+. ....+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 4699999999999999999998741000 0000000010 000000
Q ss_pred ECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEec
Q 007599 341 LPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNK 420 (596)
Q Consensus 341 l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNK 420 (596)
..+.++.++||+|..... ..+...+.. +.....+|-.++|+|+... .+....+..+-+.+++ .++++||
T Consensus 209 ~~~~d~vliDtaG~~~~~-~~l~~eL~~-i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~i-------t~iilTK 277 (328)
T 3e70_C 209 ARGIDVVLIDTAGRSETN-RNLMDEMKK-IARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKI-------DGIILTK 277 (328)
T ss_dssp HHTCSEEEEEECCSCCTT-TCHHHHHHH-HHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCC-------CEEEEEC
T ss_pred hccchhhHHhhccchhHH-HHHHHHHHH-HHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCC-------CEEEEeC
Confidence 011256789999985421 222233322 2334458999999998654 2222333333334443 4788999
Q ss_pred CCCC
Q 007599 421 IDYH 424 (596)
Q Consensus 421 iDlv 424 (596)
+|-.
T Consensus 278 lD~~ 281 (328)
T 3e70_C 278 LDAD 281 (328)
T ss_dssp GGGC
T ss_pred cCCc
Confidence 9963
No 223
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.69 E-value=8.9e-05 Score=81.39 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..-+|+|+|++|||||||++.|+|.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3468999999999999999999863
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.69 E-value=0.00012 Score=75.68 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+++|++|||||||++.|.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 358999999999999999999863
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.67 E-value=0.00014 Score=74.84 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC------CCCcc-ccccc--ce------------e---------cCee---EEEE-EC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD------SDLFS-DARLF--AT------------L---------DPRL---KSVV-LP 342 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg------~~v~~-~~~~f--~T------------l---------d~t~---~~i~-l~ 342 (596)
..+++++|++|+||||++..|.+ ..+.. ....+ .+ + ++.. ..+. +.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999983 22211 00000 00 0 0000 0000 01
Q ss_pred -Cc-eeEeeeccceeec-cchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEe
Q 007599 343 -SG-KVLLSDTVGFISD-LPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 419 (596)
Q Consensus 343 -~~-~i~liDTpG~i~~-lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlN 419 (596)
.+ +++++||||.... ....+..... .+..+..+|.+++|+|+..+ ......+. .+.. .+ ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~-~i~~~~~~d~vllVvda~~g--~~~~~~~~-~~~~-~~-----~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMK-NIYEAIKPDEVTLVIDASIG--QKAYDLAS-KFNQ-AS-----KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHH-HHHHHHCCSEEEEEEEGGGG--GGHHHHHH-HHHH-TC-----TTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHH-HHHHHhcCCEEEEEeeCCch--HHHHHHHH-HHHh-hC-----CCCEEEEe
Confidence 23 7899999998651 1112222221 12344568999999998643 22222222 2222 12 12678999
Q ss_pred cCCCCC
Q 007599 420 KIDYHD 425 (596)
Q Consensus 420 KiDlv~ 425 (596)
|+|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999754
No 226
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.62 E-value=6.3e-05 Score=79.60 Aligned_cols=112 Identities=14% Similarity=0.082 Sum_probs=58.2
Q ss_pred CCCCHHHH--HHHHHCCCCccc--ccc---cceecCeeEEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCE
Q 007599 306 TNAGKSTL--VSALSDSDLFSD--ARL---FATLDPRLKSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADL 378 (596)
Q Consensus 306 tgAGKSTL--LNaLtg~~v~~~--~~~---f~Tld~t~~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDl 378 (596)
+.+.|--| +.++...+..+. +.. ..|+......+.+.+-.+.+|||+|+...- .........++.
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r--------~~w~~~f~~~~~ 227 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSER--------KRWFECFDSVTS 227 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEETTEEEEEEEECC---------------CTTSCTTCCE
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEeeeCCeEEEEEeccchhhhh--------hhHHHHhCCCCE
Confidence 45666555 555554432221 111 122223334455554489999999995421 111122346999
Q ss_pred EEEEEeCCCCC-------hHHHHHHHHHHHHHc-CCCcccCCcEEEEEecCCCCC
Q 007599 379 LVHVLDCTAPN-------LEEHRTTVLQVLQQV-GVSEEKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 379 iL~VvDas~~~-------~~~~~~~v~~iL~~l-gi~~~~~~PiIvVlNKiDlv~ 425 (596)
+++|+|+++.+ .......+..++..+ ........|+|+|+||+|+..
T Consensus 228 iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 228 ILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 282 (362)
T ss_dssp EEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred EEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhh
Confidence 99999998721 012233333444443 211223469999999999854
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.60 E-value=5.3e-05 Score=80.25 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=35.8
Q ss_pred HHHHhHHHH-HhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 365 AFHATLEEV-VEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 365 af~~tl~e~-~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
.|.+++.++ ..++++++|+|++++.. .....+ .+.++ .+|+|+|+||+|+++.
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~-s~~~~l---~~~l~-----~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNG-SFIPGL---PRFAA-----DNPILLVGNKADLLPR 113 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGG-GCCSSH---HHHCT-----TSCEEEEEECGGGSCT
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCC-chhhHH---HHHhC-----CCCEEEEEEChhcCCC
Confidence 477777776 56789999999998742 111111 11222 3599999999999764
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.58 E-value=0.00019 Score=77.99 Aligned_cols=61 Identities=25% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC---------------CCcccccccceecCeeEEEEEC--------Cc---eeEee
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS---------------DLFSDARLFATLDPRLKSVVLP--------SG---KVLLS 349 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~---------------~v~~~~~~f~Tld~t~~~i~l~--------~~---~i~li 349 (596)
.+.+|+|+|.+++|||||||.|.|. ....-....+|...+.+...+. ++ .++++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 5689999999999999999999864 1111111123333444444432 22 68999
Q ss_pred eccceee
Q 007599 350 DTVGFIS 356 (596)
Q Consensus 350 DTpG~i~ 356 (596)
||+|+..
T Consensus 146 DTeG~~~ 152 (447)
T 3q5d_A 146 DTQGTFD 152 (447)
T ss_dssp EEECCCS
T ss_pred cCCcccc
Confidence 9999864
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.57 E-value=1.2e-05 Score=81.20 Aligned_cols=53 Identities=26% Similarity=0.209 Sum_probs=38.1
Q ss_pred HHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCcc
Q 007599 364 DAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEE 427 (596)
Q Consensus 364 ~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~ 427 (596)
.+++.....+..+|++++|+|++.|...... .+. ++ .+|.|+|+||+|+++..
T Consensus 10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~l~-ll---------~k~~iivlNK~DL~~~~ 62 (262)
T 3cnl_A 10 KAKRQIKDLLRLVNTVVEVRDARAPFATSAY-GVD-FS---------RKETIILLNKVDIADEK 62 (262)
T ss_dssp CTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-TSC-CT---------TSEEEEEEECGGGSCHH
T ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-HHH-hc---------CCCcEEEEECccCCCHH
Confidence 3467778888999999999999987433211 111 11 35999999999998753
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.51 E-value=9.5e-05 Score=78.28 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHh-cCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCc
Q 007599 364 DAFHATLEEVVE-ADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDE 426 (596)
Q Consensus 364 ~af~~tl~e~~~-aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~ 426 (596)
+.|..++.++.. +|++++|+|++++ . ..+...|..+- ..+|+|+|+||+|+.+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~--~---~~~~~~l~~~~----~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDF--N---GSWLPGLHRFV----GNNKVLLVGNKADLIPK 111 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSH--H---HHCCTTHHHHS----SSSCEEEEEECGGGSCT
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCC--c---ccHHHHHHHHh----CCCcEEEEEEChhcCCc
Confidence 457777776664 5599999999874 1 11222333321 13599999999999764
No 231
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.50 E-value=0.00027 Score=73.09 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...+|+++|++|+||||++..|++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 346899999999999999999985
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.32 E-value=0.00025 Score=76.76 Aligned_cols=119 Identities=21% Similarity=0.206 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH-------CCCCcc--cc-cccce------------ec--Cee-----E-----EE-E
Q 007599 296 GLATVAVVGYTNAGKSTLVSALS-------DSDLFS--DA-RLFAT------------LD--PRL-----K-----SV-V 340 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLt-------g~~v~~--~~-~~f~T------------ld--~t~-----~-----~i-~ 340 (596)
...+|+++|.+|+||||+...|+ |..+.. .+ +.... ++ +.. . .+ .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999997 544321 11 00000 00 000 0 00 0
Q ss_pred EC-Cc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEE
Q 007599 341 LP-SG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVW 418 (596)
Q Consensus 341 l~-~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVl 418 (596)
+. .+ +++++||||..... ..+..+.. ....+..+|.+++|+|+..+. .....+...-..+++ .-+|+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~-~~l~~~L~-~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~i-------~gvVl 247 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD-EAMMDEIK-QVHASINPVETLFVVDAMTGQ--DAANTAKAFNEALPL-------TGVVL 247 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC-HHHHHHHH-HHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHHSCC-------CCEEE
T ss_pred HHhCCCCEEEEECCCccccc-HHHHHHHH-HHHHhhcCcceeEEeecchhH--HHHHHHHHHhccCCC-------eEEEE
Confidence 11 23 79999999975421 12222222 223355689999999997642 222222222112222 34689
Q ss_pred ecCCCCC
Q 007599 419 NKIDYHD 425 (596)
Q Consensus 419 NKiDlv~ 425 (596)
||+|...
T Consensus 248 nK~D~~~ 254 (433)
T 2xxa_A 248 TKVDGDA 254 (433)
T ss_dssp ECTTSSS
T ss_pred ecCCCCc
Confidence 9999753
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.29 E-value=0.00017 Score=71.46 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~ 345 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~ 68 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYIDNIK 68 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEE
Confidence 48999999999999999999997 45777888886643
No 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.27 E-value=0.00019 Score=70.61 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~ 345 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~ 67 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL-----------DAPTEGKVFLEGKE 67 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS-----------SCCSEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEE
Confidence 47999999999999999999997 35667778776543
No 235
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.22 E-value=0.00087 Score=69.61 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...+|+++|++|+||||++..|.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 236
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.22 E-value=0.00023 Score=72.38 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCcee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKV 346 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i 346 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+.++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNKPI 72 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCEEC
Confidence 47999999999999999999997 456778888876544
No 237
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.22 E-value=0.00026 Score=70.52 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 60 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGA 60 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTE
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCE
Confidence 58999999999999999999997 4566778877654
No 238
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.19 E-value=0.00026 Score=71.34 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCcee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKV 346 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i 346 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL-----------EKPSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEc
Confidence 48999999999999999999997 456677777765443
No 239
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.18 E-value=0.00026 Score=71.07 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~ 345 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~ 70 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYFENKD 70 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEE
Confidence 48999999999999999999997 45667888876643
No 240
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.16 E-value=0.00029 Score=70.06 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 68 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL-----------VRAQKGKIIFNGQ 68 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCE
Confidence 48999999999999999999997 4566777777654
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.16 E-value=0.00014 Score=74.64 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..+|+++|++|+||||++..|++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 242
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.14 E-value=0.00026 Score=71.59 Aligned_cols=36 Identities=36% Similarity=0.455 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|+.+.+.+.+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~ 73 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY-----------LSPSHGECHLLGQ 73 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS-----------SCCSSCEEEETTE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCE
Confidence 48999999999999999999997 3456677777654
No 243
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.14 E-value=0.00031 Score=70.94 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~ 345 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~ 87 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL-----------EDFDEGEIIIDGIN 87 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEE
Confidence 48999999999999999999997 45667777776543
No 244
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.13 E-value=0.00033 Score=69.10 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g 69 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSG 69 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEECC
Confidence 48999999999999999999997 456677777755
No 245
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.12 E-value=0.00029 Score=69.07 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~ 71 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY-----------LKPLKGEIIYNGV 71 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCE
Confidence 47999999999999999999997 4566777777654
No 246
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.12 E-value=0.00033 Score=69.95 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~i~g~ 71 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF-----------YIPENGQVLIDGH 71 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCE
Confidence 48999999999999999999997 4566777777654
No 247
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.11 E-value=0.00035 Score=70.30 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~ 77 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL-----------IKPSSGIVTVFGK 77 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred cEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCE
Confidence 48999999999999999999997 3566777777654
No 248
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.09 E-value=0.00033 Score=69.53 Aligned_cols=35 Identities=43% Similarity=0.497 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g 66 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKG 66 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECC
Confidence 48999999999999999999997 345667777654
No 249
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.08 E-value=0.00039 Score=70.86 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCcee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGKV 346 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~i 346 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNLFGKMP 85 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTBCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEECCEEc
Confidence 47999999999999999999997 456778888866543
No 250
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.07 E-value=0.00043 Score=74.73 Aligned_cols=119 Identities=22% Similarity=0.191 Sum_probs=63.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC------CCcc--ccc-ccc------e------ec---------Cee--E-EEE-E
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS------DLFS--DAR-LFA------T------LD---------PRL--K-SVV-L 341 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~------~v~~--~~~-~f~------T------ld---------~t~--~-~i~-l 341 (596)
...+|+++|++|+||||++..|.+. .+.. .+. ..+ + ++ +.. . .+. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999752 1110 000 000 0 00 000 0 000 0
Q ss_pred -CCc-eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEe
Q 007599 342 -PSG-KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 419 (596)
Q Consensus 342 -~~~-~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlN 419 (596)
..+ +++++||||..... ..+..... .+..+..+|.+++|+|+..+ ......+...-..++ ..-+|+|
T Consensus 177 ~~~~~DvVIIDTaG~l~~d-~~l~~el~-~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~-------i~GVIlT 245 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQID-EPLMGELA-RLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVG-------VTGLVLT 245 (425)
T ss_dssp HHTTCSEEEEECCCCSSCC-HHHHHHHH-HHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTC-------CCEEEEE
T ss_pred HHCCCCEEEEcCCCccccc-HHHHHHHH-HhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCC-------ceEEEEe
Confidence 122 78999999976431 12222221 22334468999999998654 222222322222333 2467899
Q ss_pred cCCCCC
Q 007599 420 KIDYHD 425 (596)
Q Consensus 420 KiDlv~ 425 (596)
|+|...
T Consensus 246 KlD~~~ 251 (425)
T 2ffh_A 246 KLDGDA 251 (425)
T ss_dssp SGGGCS
T ss_pred CcCCcc
Confidence 999643
No 251
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.06 E-value=0.00047 Score=72.81 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDL 322 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v 322 (596)
.+++|+|++|||||||+|+|+|...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3799999999999999999999643
No 252
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.06 E-value=0.00042 Score=69.44 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. +.|. +.+.+.+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl-----------~~p~-G~i~~~g~ 61 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM-----------TSGK-GSIQFAGQ 61 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS-----------SCCE-EEEEETTE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-----------CCCC-eEEEECCE
Confidence 47999999999999999999997 4566 78877654
No 253
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.06 E-value=0.00041 Score=70.02 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~ 69 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLYDGE 69 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCE
Confidence 48999999999999999999997 4566778877664
No 254
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.05 E-value=0.00041 Score=70.27 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~ 81 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL-----------YQPTGGKVLLDGE 81 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCE
Confidence 48999999999999999999997 3566677777654
No 255
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.03 E-value=0.00033 Score=69.68 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g 63 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF-----------YQPTAGEITIDG 63 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS-----------SCCSBSCEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECC
Confidence 58999999999999999999997 334555565554
No 256
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.01 E-value=0.00018 Score=74.38 Aligned_cols=55 Identities=27% Similarity=0.303 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCc-ccccc-------cceecCeeEEEEECCceeEeeeccceee
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLF-SDARL-------FATLDPRLKSVVLPSGKVLLSDTVGFIS 356 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~-~~~~~-------f~Tld~t~~~i~l~~~~i~liDTpG~i~ 356 (596)
.+++|+|++|||||||+|+|+|.... ..... .+|... ..+... ...++||||+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTS--GGLVADTPGFSS 236 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEET--TEEEESSCSCSS
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcC--CEEEecCCCccc
Confidence 48999999999999999999986421 11111 122221 122222 246899999875
No 257
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.98 E-value=0.00059 Score=72.25 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~ 345 (596)
-+++|+|++|||||||++.|+|. ..|+.+.+.+.+.+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL-----------~~p~~G~I~i~G~~ 91 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL-----------ERPTEGSVLVDGQE 91 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEE
T ss_pred CEEEEEcCCCchHHHHHHHHhcC-----------CCCCceEEEECCEE
Confidence 58999999999999999999997 35667777776543
No 258
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.97 E-value=0.00066 Score=69.70 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
.+++++|++|||||||+|+|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 479999999999999999999 54
No 259
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.96 E-value=0.00041 Score=71.11 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
.+++++|++|||||||+|+|+|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 479999999999999999999964
No 260
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.93 E-value=0.00068 Score=71.60 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|+.+.+.+.+.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~ 66 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF-----------EQPDSGEISLSGK 66 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCE
Confidence 47999999999999999999997 3455556655443
No 261
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.89 E-value=0.00084 Score=68.81 Aligned_cols=119 Identities=21% Similarity=0.185 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC------CCcc--ccc-ccc------ee-c-CeeEEEE-----------------E
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS------DLFS--DAR-LFA------TL-D-PRLKSVV-----------------L 341 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~------~v~~--~~~-~f~------Tl-d-~t~~~i~-----------------l 341 (596)
...+++++|++|+||||++..|++. .+.. .+. ... +. . .....+. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999753 1110 000 000 00 0 0000000 0
Q ss_pred --CCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEe
Q 007599 342 --PSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWN 419 (596)
Q Consensus 342 --~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlN 419 (596)
.+.+++++||||.... ........... .....+|.+++|+|+... ......+......++ ..-+|+|
T Consensus 177 ~~~~~D~viiDtpp~~~~-d~~~~~~l~~~-~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~-------i~givln 245 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI-DEPLMGELARL-KEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVG-------VTGLVLT 245 (295)
T ss_dssp HHHTCCEEEEECCCCSSC-CHHHHHHHHHH-HHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-------CCEEEEE
T ss_pred HhCCCCEEEEeCCCCccc-cHHHHHHHHHH-hhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCC-------CCEEEEE
Confidence 1127899999987543 11222222222 223358888999998643 233333333222333 2457899
Q ss_pred cCCCCC
Q 007599 420 KIDYHD 425 (596)
Q Consensus 420 KiDlv~ 425 (596)
|+|...
T Consensus 246 k~d~~~ 251 (295)
T 1ls1_A 246 KLDGDA 251 (295)
T ss_dssp CGGGCS
T ss_pred CCCCCc
Confidence 999643
No 262
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.00079 Score=67.98 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. . |..+.+.+.+.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~ 65 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGM 65 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTE
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCE
Confidence 47999999999999999999997 4 55677776553
No 263
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.85 E-value=0.00052 Score=70.92 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. .+|..+.+.+.+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~G~ 116 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRIDGQ 116 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEECCE
Confidence 48999999999999999999997 4566777777654
No 264
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.84 E-value=0.00087 Score=71.32 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 47999999999999999999997
No 265
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.84 E-value=0.00087 Score=70.68 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g 76 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL-----------ERPTKGDVWIGG 76 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETT
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECC
Confidence 48999999999999999999997 345555665544
No 266
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.83 E-value=0.0009 Score=70.68 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 47999999999999999999997
No 267
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.83 E-value=0.00098 Score=70.71 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 47999999999999999999997
No 268
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.00095 Score=70.57 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 47999999999999999999997
No 269
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.80 E-value=0.0026 Score=62.43 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=20.4
Q ss_pred EEEccCCCCCCHHHHHHHHHHHHh
Q 007599 539 DVKISARTGVGLQELLEIIDERLK 562 (596)
Q Consensus 539 vv~vSA~tG~Gi~eLl~~I~~~~~ 562 (596)
|.++||+||+|+.|=|+-|-+.++
T Consensus 199 Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 199 VQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp EEEEETTTCTTHHHHHHHHTTTTT
T ss_pred EEEeECCCCcCHHHHHHHHHHHHH
Confidence 899999999999998887765544
No 270
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.78 E-value=0.00074 Score=69.21 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g 99 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSG 99 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS-----------SCEEEEEEECCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECC
Confidence 48999999999999999999997 345566666654
No 271
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.77 E-value=0.0011 Score=70.44 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. ..|+.+.+.+.+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g 72 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGD 72 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETT
T ss_pred CEEEEECCCCChHHHHHHHHHcC-----------CCCCceEEEECC
Confidence 48999999999999999999997 345555665544
No 272
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.77 E-value=0.001 Score=66.97 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999996
No 273
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.76 E-value=0.0011 Score=66.24 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|.. ...|..+.+.+.+.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~---------~~~p~~G~I~~~g~ 67 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDP---------EYTVERGEILLDGE 67 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCT---------TCEEEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---------CCCCCceEEEECCE
Confidence 489999999999999999999951 02355677777654
No 274
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.73 E-value=0.0011 Score=67.00 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|.. ...|..+.+.+.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~---------~~~p~~G~I~~~g~ 84 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE---------DYEVTGGTVEFKGK 84 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT---------TCEEEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---------CCCCCCeEEEECCE
Confidence 489999999999999999999961 01355677777654
No 275
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.72 E-value=0.00065 Score=65.27 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999996
No 276
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.71 E-value=0.001 Score=66.68 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999997
No 277
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.71 E-value=0.00056 Score=66.32 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCC--cccccccceecCeeEEEEECCceeEeeeccce
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDL--FSDARLFATLDPRLKSVVLPSGKVLLSDTVGF 354 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v--~~~~~~f~Tld~t~~~i~l~~~~i~liDTpG~ 354 (596)
...|+|+|++|||||||+++|.+... .......+|..+..+. ..+..+.++|+..|
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 36899999999999999999997532 2223334444454332 22236666666554
No 278
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.70 E-value=0.00089 Score=70.40 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~~~g 61 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF-----------HVPDSGRILLDG 61 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS-----------SCCSEEEEEETT
T ss_pred CEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECC
Confidence 48999999999999999999997 345556666654
No 279
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.69 E-value=0.0008 Score=70.86 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. ..|..+.+.+.+.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~ 67 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDR 67 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCE
Confidence 48999999999999999999997 3455566655543
No 280
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.65 E-value=0.00082 Score=63.70 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+++|+|++|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 281
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.56 E-value=0.001 Score=63.04 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++|+|++|||||||++.|++.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999986
No 282
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.54 E-value=0.00088 Score=64.18 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|||||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999984
No 283
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.51 E-value=0.0018 Score=69.42 Aligned_cols=81 Identities=11% Similarity=0.074 Sum_probs=49.8
Q ss_pred EEEEECCceeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCC-------ChHHHHHHHHHHHHHcCC-Cc
Q 007599 337 KSVVLPSGKVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAP-------NLEEHRTTVLQVLQQVGV-SE 408 (596)
Q Consensus 337 ~~i~l~~~~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~-------~~~~~~~~v~~iL~~lgi-~~ 408 (596)
..+.+.+-.+.+|||+|+.++-. ........++.+++|+|+++- ........+..++..+-- ..
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~~r~--------~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRDERR--------KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp EEEEETTEEEEEEEECCSGGGGG--------GGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred EEeecCCccceecccchhhhhhh--------hhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 34555444899999999965311 112224569999999999871 012233444455555421 12
Q ss_pred ccCCcEEEEEecCCCCC
Q 007599 409 EKLKNMIEVWNKIDYHD 425 (596)
Q Consensus 409 ~~~~PiIvVlNKiDlv~ 425 (596)
....|+|+|+||+|+..
T Consensus 282 ~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 282 LRTISVILFLNKQDLLA 298 (402)
T ss_dssp CSSCCEEEEEECHHHHH
T ss_pred CCCCeEEEEEEChhhhh
Confidence 23469999999999854
No 284
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.51 E-value=0.0011 Score=61.68 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|++|||||||++.|+|..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999999963
No 285
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.51 E-value=0.012 Score=55.47 Aligned_cols=66 Identities=11% Similarity=-0.001 Sum_probs=44.9
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
+++++|||+.... .+...+..+|.+++++..+.. . .....+.+.+..++.. ....++.+|+||+|.
T Consensus 77 D~viiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~-~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 77 DFAIVDGAGSLSV----------ITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAY-SRKVEARFLITRKIE 142 (206)
T ss_dssp SEEEEECCSSSSH----------HHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCG-GGCCEEEEEECSBCT
T ss_pred CEEEEECCCCCCH----------HHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHh-CCCCcEEEEEeccCC
Confidence 7899999987632 122334459999999987665 3 5566666777766532 222367899999984
No 286
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0012 Score=61.97 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999985
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.46 E-value=0.001 Score=62.75 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++|+|++|||||||++.|++.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.36 E-value=0.0012 Score=64.23 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999996
No 289
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.36 E-value=0.0013 Score=64.10 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++|+|++|||||||++.|+|.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999995
No 290
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.35 E-value=0.0018 Score=62.27 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999985
No 291
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.33 E-value=0.0016 Score=63.82 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|||||||+++|+|.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999996
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.31 E-value=0.0024 Score=59.81 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+|+|++|||||||++.|++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999985
No 293
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.29 E-value=0.0007 Score=63.97 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++|+|++|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999986
No 294
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.21 E-value=0.0021 Score=59.90 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
-+++++|++|||||||++.+.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5899999999999999998654
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.19 E-value=0.0023 Score=61.07 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999985
No 296
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.15 E-value=0.0037 Score=66.65 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-.++|+|++|||||||++.|+|.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 48999999999999999999996
No 297
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.14 E-value=0.0033 Score=70.29 Aligned_cols=37 Identities=32% Similarity=0.415 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCce
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSGK 345 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~~ 345 (596)
-+++|+|++|||||||++.|+|. .+|..+.+.+.+.+
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF-----------YDVDSGSICLDGHD 406 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEE
Confidence 47999999999999999999997 45667777776543
No 298
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.13 E-value=0.0025 Score=67.04 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|||||||+++|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999996
No 299
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.09 E-value=0.0021 Score=66.95 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.++|+|++|||||||+++|+|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999996
No 300
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.09 E-value=0.0036 Score=69.94 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. .+|+.+.+.+.+.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~ 405 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF-----------YDIDEGHILMDGH 405 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEECCE
Confidence 47999999999999999999997 4567777777654
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.03 E-value=0.0028 Score=63.76 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-.++|+|++|||||||++.|+|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 58999999999999999999985
No 302
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.02 E-value=0.0035 Score=70.33 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. .+|..+.+.+.+.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILVDGI 417 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEECCE
Confidence 48999999999999999999997 4566777777654
No 303
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.02 E-value=0.0034 Score=70.30 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. .+|+.+.+.+.+.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~ 406 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISLDGH 406 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCE
Confidence 37999999999999999999997 4567777777654
No 304
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.94 E-value=0.0028 Score=66.75 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=44.6
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCC-------CChHHHHHHHHHHHHHcC-CCcccCCcEEE
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTA-------PNLEEHRTTVLQVLQQVG-VSEEKLKNMIE 416 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~-------~~~~~~~~~v~~iL~~lg-i~~~~~~PiIv 416 (596)
.+.+|||+|+.++-. ........++.+++|+|++. .........+..++..+- .......|+|+
T Consensus 184 ~l~iwDtaGQe~~r~--------~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiL 255 (354)
T 2xtz_A 184 VYRLFDVGGQRNERR--------KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 255 (354)
T ss_dssp EEEEEEECCSTTGGG--------GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEE
T ss_pred eeEEEECCCchhhhH--------HHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEE
Confidence 789999999864311 11122456999999999871 111233344444554432 11223469999
Q ss_pred EEecCCCCC
Q 007599 417 VWNKIDYHD 425 (596)
Q Consensus 417 VlNKiDlv~ 425 (596)
|+||+|+..
T Consensus 256 vgNK~DL~~ 264 (354)
T 2xtz_A 256 FLNKFDIFE 264 (354)
T ss_dssp EEECHHHHH
T ss_pred EEECcchhh
Confidence 999999854
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.94 E-value=0.0039 Score=59.92 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
..|+|+|++|||||||++.|++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999999863
No 306
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.94 E-value=0.0033 Score=70.28 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++++|++|||||||++.|+|. .+|+.+.+.+.+.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~ 403 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILIDGH 403 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEETTE
T ss_pred CEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCE
Confidence 48999999999999999999997 4567777777654
No 307
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.92 E-value=0.0028 Score=65.44 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++++|+|++|||||||+|.|.+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999975
No 308
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.91 E-value=0.0035 Score=58.77 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
.+++|+|++|||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 309
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.88 E-value=0.012 Score=60.39 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.5
Q ss_pred EEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 539 DVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 539 vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
|.++||+||+|+.|=|+-|-+.++.
T Consensus 284 Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 284 VQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEecccCCCcCHHHHHHHHHHHHHh
Confidence 8999999999999998888776643
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.87 E-value=0.0027 Score=61.80 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-CC
Q 007599 298 ATVAVVGYTNAGKSTLVSALS-DS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLt-g~ 320 (596)
.+++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999999 85
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.81 E-value=0.0034 Score=60.09 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+++|+|++|||||||++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999985
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.79 E-value=0.005 Score=58.11 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999999863
No 313
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.79 E-value=0.0039 Score=59.76 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999984
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.78 E-value=0.0039 Score=64.33 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 58999999999999999999985
No 315
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.78 E-value=0.0047 Score=69.16 Aligned_cols=36 Identities=36% Similarity=0.461 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|+|. .+|+.+.+.+++.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEVDEL 405 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEESSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEECCE
Confidence 48999999999999999999997 4566777777654
No 316
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.76 E-value=0.0014 Score=67.67 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
+.++|.+++|+|+..|..... .+..+|....- ..+|.++|+||+|+.+...
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~ 134 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEA---NDIQPIICITKMDLIEDQD 134 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH--HHHHHHHHHHT---TTCEEEEEEECGGGCCCHH
T ss_pred HHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHH---CCCCEEEEEECCccCchhh
Confidence 567999999999987754332 34444432211 1137899999999987643
No 317
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.75 E-value=0.0049 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+|+|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999874
No 318
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.75 E-value=0.0055 Score=60.24 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH---CC
Q 007599 297 LATVAVVGYTNAGKSTLVSALS---DS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLt---g~ 320 (596)
..+|+|+|++|||||||++.|+ |.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3689999999999999999999 75
No 319
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.75 E-value=0.005 Score=59.77 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
-+++|+|++|||||||++.|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999999983
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.71 E-value=0.0053 Score=63.40 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...+|+|+|++|||||||++.|.|.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3479999999999999999999985
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.71 E-value=0.0056 Score=60.33 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||++.|.+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999884
No 322
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.0071 Score=67.13 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|++|||||||++.|+|..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999963
No 323
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.61 E-value=0.0047 Score=56.79 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+|+|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999885
No 324
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.16 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.-|.|.||||+|||+|.+++++.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999885
No 325
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.57 E-value=0.031 Score=58.92 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=29.5
Q ss_pred HHhcCEEEEEEeCCCCChHHHHHHHHHHH---HHcCCCcccCCcEEEEEecCCCCCccc
Q 007599 373 VVEADLLVHVLDCTAPNLEEHRTTVLQVL---QQVGVSEEKLKNMIEVWNKIDYHDEEM 428 (596)
Q Consensus 373 ~~~aDliL~VvDas~~~~~~~~~~v~~iL---~~lgi~~~~~~PiIvVlNKiDlv~~~~ 428 (596)
+.++|.+++| |+..|..... .+..+| +..++ |.|+|+||+|+.+...
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~--~i~r~L~~a~~~~~------~~iivlNK~DL~~~~~ 177 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLN--IIDRYLVGCETLQV------EPLIVLNKIDLLDDEG 177 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHH--HHHHHHHHHHHHTC------EEEEEEECGGGCCHHH
T ss_pred HhcCCEEEEE-EeCCCCCCHH--HHHHHHHHHHhcCC------CEEEEEECccCCCchh
Confidence 3568998866 5555643222 333443 34454 7799999999987643
No 326
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.49 E-value=0.0079 Score=57.20 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999875
No 327
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.49 E-value=0.0057 Score=67.50 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.++|+|+||||||||+|+|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999985
No 328
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.47 E-value=0.0061 Score=67.66 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|+||||||||++.|+|..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999999963
No 329
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.12 Score=55.66 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.-|.+.||||+|||+|.+++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999885
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.46 E-value=0.007 Score=57.21 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+.++++|++|||||||+++|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 579999999999999999999874
No 331
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.45 E-value=0.0086 Score=55.26 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 368999999999999999999763
No 332
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.38 E-value=0.0075 Score=66.91 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|++|||||||++.|+|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999963
No 333
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.37 E-value=0.0033 Score=68.85 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||+++|+|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999974
No 334
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.34 E-value=0.007 Score=63.73 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-.|+|+|++|||||||+++|++.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999884
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.32 E-value=0.0075 Score=56.03 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|++|||||||+++|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999763
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.23 E-value=0.011 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+|+|++||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999874
No 337
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.21 E-value=0.0045 Score=75.70 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+|||||++|||||||++.|.+. .+|..+.+.+++.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFIDGS 1141 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEETTE
T ss_pred CEEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEECCE
Confidence 47999999999999999999997 5677778877664
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.21 E-value=0.0089 Score=57.41 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 339
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.21 E-value=0.025 Score=58.71 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...+|+|+|++|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 340
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.19 E-value=0.0096 Score=61.02 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999985
No 341
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.17 E-value=0.01 Score=60.99 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.-+++++|++|||||||++.|+|.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 342
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.0094 Score=67.11 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|++|||||||++.|+|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 489999999999999999999964
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.14 E-value=0.0074 Score=63.20 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++|+|++|||||||++.|+|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999996
No 344
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.13 E-value=0.074 Score=51.01 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=41.5
Q ss_pred eeEeeeccce-eeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCC
Q 007599 345 KVLLSDTVGF-ISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDY 423 (596)
Q Consensus 345 ~i~liDTpG~-i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDl 423 (596)
+++++|||+. ... . +...+..+|.+++++..+.. .......+.+.+..+. ..++.+|+|++|.
T Consensus 69 D~viiD~p~~~~~~---~-------~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~vv~N~~~~ 132 (209)
T 3cwq_A 69 QNIVIDTQARPEDE---D-------LEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG-----NNRFRILLTIIPP 132 (209)
T ss_dssp SEEEEEEECCCSSS---H-------HHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC-----SSSEEEEECSBCC
T ss_pred CEEEEeCCCCcCcH---H-------HHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc-----CCCEEEEEEecCC
Confidence 7899999987 432 1 12234569999999876432 2233344555666543 1368899999986
Q ss_pred CC
Q 007599 424 HD 425 (596)
Q Consensus 424 v~ 425 (596)
..
T Consensus 133 ~~ 134 (209)
T 3cwq_A 133 YP 134 (209)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 345
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.11 E-value=0.0097 Score=56.33 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+|+|++||||||+.+.|.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHHHC
Confidence 47999999999999999999883
No 346
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.18 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.-|.+.||||+|||+|.+++++.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 45899999999999999999885
No 347
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.10 E-value=0.013 Score=58.19 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLt 318 (596)
..+|+|+|++|||||||++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999999
No 348
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.09 E-value=0.023 Score=57.30 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHCC
Q 007599 300 VAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~ 320 (596)
++|+|++|+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 349
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.07 E-value=0.0093 Score=63.01 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-.|+|+|++|||||||+++|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999984
No 350
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.05 E-value=0.0094 Score=70.43 Aligned_cols=35 Identities=37% Similarity=0.502 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|+|. +.|..+.+.+.+
T Consensus 700 eivaIiGpNGSGKSTLLklLaGl-----------l~P~sG~I~~~~ 734 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGE-----------LLPTSGEVYTHE 734 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTS-----------SCCSEEEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEcC
Confidence 48999999999999999999997 456667777654
No 351
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.00 E-value=0.012 Score=53.16 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSAL 317 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaL 317 (596)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 352
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.96 E-value=0.01 Score=63.76 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-.|+|+|+||||||||+++|++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999985
No 353
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.95 E-value=0.013 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|+|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 354
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.95 E-value=0.013 Score=61.40 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999996
No 355
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.93 E-value=0.0098 Score=55.29 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|+|||||++++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999885
No 356
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.90 E-value=0.011 Score=66.44 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|++|||||||++.|+|..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 479999999999999999999964
No 357
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.87 E-value=0.016 Score=55.04 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999985
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.85 E-value=0.014 Score=55.56 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999874
No 359
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.85 E-value=0.22 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...+.|.|++|+|||||.++|...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999874
No 360
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.81 E-value=0.014 Score=55.69 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|+|+|++|||||||.+.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999999864
No 361
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.81 E-value=0.019 Score=52.57 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLt 318 (596)
...+|+|++|+|||||+.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999986
No 362
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.0096 Score=64.82 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
.+++|+|++|||||||++.|+|..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 689999999999999999999863
No 363
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.80 E-value=0.016 Score=70.71 Aligned_cols=35 Identities=37% Similarity=0.435 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-+++|+|++|||||||++.|.|. .+|..+.+.+++
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~i~g 451 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRL-----------YDPLDGMVSIDG 451 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTS-----------SCCSEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECC
Confidence 47999999999999999999996 345566666654
No 364
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.77 E-value=0.014 Score=64.66 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|++|||||||++.|+|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999963
No 365
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.71 E-value=0.016 Score=62.69 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999996
No 366
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.69 E-value=0.013 Score=57.06 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|+|+|++|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999885
No 367
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.26 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.-|.|.|++|+|||+|.+++++.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 46999999999999999999985
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.64 E-value=0.019 Score=54.14 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++++++|++|||||||+++|...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999863
No 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.63 E-value=0.012 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|+|||||++++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999985
No 370
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.63 E-value=0.015 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++|||||||.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999764
No 371
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.62 E-value=0.017 Score=60.85 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..-+|+++|++|||||||++.|++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3468999999999999999999874
No 372
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.61 E-value=0.016 Score=65.19 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|++|||||||++.|+|..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999963
No 373
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.61 E-value=0.019 Score=60.37 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLt 318 (596)
..++|+|+|||||||||++|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999997
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.57 E-value=0.037 Score=56.45 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...+|+|+|++|||||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999875
No 375
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.54 E-value=0.019 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+|+|+|++||||||+.+.|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 376
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.46 E-value=0.023 Score=69.44 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPS 343 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~ 343 (596)
-.++|||++|||||||++.|.|. .+|..+.+.+++
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG 479 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDG 479 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETT
T ss_pred cEEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCC
Confidence 38999999999999999999997 466667776654
No 377
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.45 E-value=0.06 Score=58.31 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=52.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEE-------CCc--eeEeeeccceee--ccchhhHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVL-------PSG--KVLLSDTVGFIS--DLPLQLVDA 365 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l-------~~~--~i~liDTpG~i~--~lp~~lv~a 365 (596)
..+|.++|.+||||||+.++|..... ..+ . ++ ..+.. .+. ...++|+.|... .........
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~----~~~--~-~t-~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~ 110 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN----FIG--V-PT-REFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAA 110 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH----HTT--C-CE-EEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh----ccC--C-Cc-eEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999976310 000 0 00 00110 011 223556655411 000011111
Q ss_pred HHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCC
Q 007599 366 FHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGV 406 (596)
Q Consensus 366 f~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi 406 (596)
+......+..++..++|+|++.. .......+.+.+...+.
T Consensus 111 l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~ 150 (469)
T 1bif_A 111 LNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGY 150 (469)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCC
Confidence 11112233345677889999876 44555666666666653
No 378
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.34 E-value=0.02 Score=54.53 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-.++|+|++|||||||++.|++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999853
No 379
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.021 Score=64.33 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSD 321 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~ 321 (596)
-+++|+|++|||||||++.|+|..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999999974
No 380
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.3 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..-|.+.||||+|||+|.+++++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 356999999999999999999985
No 381
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.27 E-value=0.022 Score=54.38 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHCC
Q 007599 300 VAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 300 VaLVG~tgAGKSTLLNaLtg~ 320 (596)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 382
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.21 E-value=0.029 Score=51.40 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999986
No 383
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.16 E-value=0.027 Score=68.63 Aligned_cols=36 Identities=42% Similarity=0.512 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCCCCcccccccceecCeeEEEEECCc
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDSDLFSDARLFATLDPRLKSVVLPSG 344 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~~v~~~~~~f~Tld~t~~~i~l~~~ 344 (596)
-+++|+|++|||||||++.|.|. .+|..+.+.+.+.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~-----------~~p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERF-----------YDPMAGSVFLDGK 1095 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTS-----------SCCSEEEEESSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCE
Confidence 47999999999999999999997 4566777777654
No 384
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.10 E-value=0.027 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 385
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.10 E-value=0.27 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 007599 296 GLATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLt 318 (596)
.+.+|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 57899999999999999999665
No 386
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.09 E-value=0.029 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|+|.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 387
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.97 E-value=0.031 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|.|+|++||||||+.++|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999863
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.89 E-value=0.034 Score=51.55 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|+|+|.+||||||+.+.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.85 E-value=0.025 Score=56.95 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-.++|+|++|+|||||++.|++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999999874
No 390
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.81 E-value=0.037 Score=51.37 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|.|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.78 E-value=0.043 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
....|+|+|++||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999764
No 392
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.75 E-value=0.028 Score=55.17 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-++|+|++|+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999985
No 393
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.72 E-value=0.04 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...+|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999874
No 394
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.71 E-value=0.037 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
.+.|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 395
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.69 E-value=0.037 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.67 E-value=0.03 Score=57.83 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...++|+|++|+|||||+++|++.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999985
No 397
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.65 E-value=0.043 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLt 318 (596)
....+|+|++|||||||+.+|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3688999999999999999985
No 398
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.62 E-value=0.55 Score=47.47 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=43.7
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEEEEEecCCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMIEVWNKIDYH 424 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiIvVlNKiDlv 424 (596)
+++|+|||...... + +..-...+|.+++|+..... .......+.+.|...+.. .+-+|+||+|.-
T Consensus 203 D~VIIDtpp~~~~~--d-------a~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g~~-----~~GvVlN~v~~~ 267 (286)
T 3la6_A 203 DLVLIDTPPILAVT--D-------AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNGIP-----VKGVILNSIFRR 267 (286)
T ss_dssp SEEEEECCCTTTCT--H-------HHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTTCC-----CCEEEEEEECCC
T ss_pred CEEEEcCCCCcchH--H-------HHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCCCC-----EEEEEEcCcccc
Confidence 46789998864320 0 12223458999999988654 345566667788887752 467899999854
Q ss_pred C
Q 007599 425 D 425 (596)
Q Consensus 425 ~ 425 (596)
.
T Consensus 268 ~ 268 (286)
T 3la6_A 268 A 268 (286)
T ss_dssp C
T ss_pred c
Confidence 3
No 399
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.62 E-value=0.041 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 400
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.57 E-value=0.049 Score=50.92 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.++|+|+|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 401
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.53 E-value=0.0063 Score=60.12 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+++|+|++|||||||+++|++.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999985
No 402
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.46 Score=51.59 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..-|.|.|++|+|||+|.+++++.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc
Confidence 356899999999999999999885
No 403
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.51 E-value=0.24 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|.|.|++|+|||||.++|.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999875
No 404
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.49 E-value=0.17 Score=50.99 Aligned_cols=67 Identities=15% Similarity=0.007 Sum_probs=37.8
Q ss_pred eeEeeeccceeeccchhhHHHHHHhHHHHHhcCEEEEEEeCCCCChHHHHHHHHHHHHHcCCCcccCCcEE-EEEecCCC
Q 007599 345 KVLLSDTVGFISDLPLQLVDAFHATLEEVVEADLLVHVLDCTAPNLEEHRTTVLQVLQQVGVSEEKLKNMI-EVWNKIDY 423 (596)
Q Consensus 345 ~i~liDTpG~i~~lp~~lv~af~~tl~e~~~aDliL~VvDas~~~~~~~~~~v~~iL~~lgi~~~~~~PiI-vVlNKiDl 423 (596)
+++++|||+..... . +...+..+|.+++|+..+.. .......+.+.+..++.. ...+++ +|+|+++.
T Consensus 158 D~ViiD~p~~~~~~--~-------~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~--~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 158 DVVIFDVLGDVVCG--G-------FAAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKN--YKVRLAGCVANRSRA 225 (307)
T ss_dssp SEEEEEECCSSCCG--G-------GGGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTT--CCCEEEEEEEESCSC
T ss_pred CEEEEeCCCccchH--H-------HHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhc--CCCceEEEEEecCCc
Confidence 67899998765321 0 11123459999999865432 223334445555554321 122434 89999983
No 405
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.44 E-value=0.045 Score=56.70 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLt 318 (596)
....+|+|+||||||||+++|+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
No 406
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.40 E-value=0.038 Score=53.22 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 48999999999999999999984
No 407
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.39 E-value=0.047 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|+|+|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 408
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.32 E-value=0.044 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
.+.|+|+|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 36789999999999999999974
No 409
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.24 E-value=0.058 Score=50.70 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999976
No 410
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.24 E-value=0.038 Score=55.20 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-++|+|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999985
No 411
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.24 E-value=0.014 Score=61.72 Aligned_cols=21 Identities=48% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHC
Q 007599 299 TVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg 319 (596)
+++|+|+||||||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999965
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.23 E-value=0.057 Score=51.63 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..+|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 413
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.19 E-value=0.046 Score=54.26 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|+|+|++|||||||-+.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999975
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.18 E-value=0.043 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
-.++|+|++|+|||||++.|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 415
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.15 E-value=0.022 Score=54.04 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.|+|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 416
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.12 E-value=0.4 Score=46.55 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|.|.|++|+|||+|.++|...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999874
No 417
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.12 E-value=0.057 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 418
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.10 E-value=0.06 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 419
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.05 E-value=0.04 Score=65.15 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|+|.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999964
No 420
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.04 E-value=0.045 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
++|+|+|++||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.93 E-value=0.066 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
....|+|+|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 422
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.88 E-value=0.061 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|+|+|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 423
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.81 E-value=0.065 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 424
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.81 E-value=0.079 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|+|+|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 425
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.77 E-value=0.094 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|+|+|++||||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999774
No 426
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.74 E-value=0.044 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+|+|++||||||+.+.|.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999873
No 427
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.71 E-value=0.045 Score=56.24 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHC
Q 007599 299 TVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg 319 (596)
..+|+|+||||||||+++|..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 899999999999999999984
No 428
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.64 E-value=0.063 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 429
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.63 E-value=0.072 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
.+.|+|+|++||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999975
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.62 E-value=0.064 Score=51.01 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHC
Q 007599 299 TVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg 319 (596)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 431
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.61 E-value=0.063 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|+|+|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 432
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.61 E-value=0.065 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|+|+|++||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999763
No 433
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.52 E-value=0.069 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 434
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.52 E-value=0.087 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|+|+|++||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 435
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.52 E-value=0.055 Score=57.82 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|+|||||+++|.+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999863
No 436
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.43 E-value=0.072 Score=49.30 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHC
Q 007599 299 TVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg 319 (596)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 437
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.40 E-value=0.065 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
+.|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 438
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.37 E-value=0.76 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|.|.|++|+|||+|.+++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57899999999999999999874
No 439
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.36 E-value=0.065 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.35 E-value=0.067 Score=56.64 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|+|++|+|||||+++|.+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999973
No 441
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.30 E-value=0.063 Score=56.48 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
.+++|+|++|+|||||+++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 3899999999999999999985
No 442
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.30 E-value=0.08 Score=48.09 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHC
Q 007599 299 TVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg 319 (596)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 443
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.26 E-value=0.076 Score=50.58 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHC
Q 007599 299 TVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg 319 (596)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 444
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.24 E-value=0.043 Score=62.23 Aligned_cols=21 Identities=48% Similarity=0.613 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLt 318 (596)
-+++|+|++|||||||+|.|+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 479999999999999998764
No 445
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.19 E-value=0.062 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
++|+|+|++||||||+-+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.18 E-value=0.063 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
-+++|+|++|+|||||+..|++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 447
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.13 E-value=0.088 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|.|+|++|||||||.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.05 E-value=0.086 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..+|+|+|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 449
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.90 E-value=0.079 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
++|+|.|++||||||+.+.|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999976
No 450
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.88 E-value=0.065 Score=49.34 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=16.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|.|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 451
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.87 E-value=0.084 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..|.|+|++|+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999874
No 452
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.81 E-value=0.31 Score=49.20 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+.|.|++|+|||+|.++|...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46777899999999999999874
No 453
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.75 E-value=0.076 Score=52.45 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
....|.++|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999864
No 454
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.72 E-value=0.31 Score=48.65 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...+.|.|++|+|||||.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 455
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.71 E-value=0.11 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..+|+|+|++||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.64 E-value=0.099 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..+|+|+|++||||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 457
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.61 E-value=0.11 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...+|+|.|++||||||+-+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999976
No 458
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.58 E-value=0.11 Score=58.89 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=15.9
Q ss_pred eEEEEEcCCCCCHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLV 314 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLL 314 (596)
-+++|+|++|||||||+
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 58999999999999996
No 459
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.55 E-value=1.2 Score=48.67 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|.|.|++|+|||+|.++|...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH
Confidence 356999999999999999999764
No 460
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.55 E-value=0.12 Score=46.83 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+.|.|++|+|||||++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 461
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.50 E-value=0.12 Score=50.40 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|+|.|++||||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 462
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.50 E-value=0.078 Score=58.28 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=24.2
Q ss_pred ccCCCCCCCCEEEccCCCCCCHHHHHHHHHHHHhh
Q 007599 529 DSQSQDQHAPDVKISARTGVGLQELLEIIDERLKT 563 (596)
Q Consensus 529 ~~~~~p~~~~vv~vSA~tG~Gi~eLl~~I~~~~~~ 563 (596)
.+.+.+ -.++.+....|.|=..|+..|-.....
T Consensus 275 ~g~i~~--G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 275 GGGFFK--DSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp TSSEES--SCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCCC--CcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344444 346778889999999999998876654
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.38 E-value=0.33 Score=48.55 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
....+.|.|++|+|||+|.+++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999887753
No 464
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.36 E-value=0.1 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHC
Q 007599 299 TVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg 319 (596)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 465
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.25 E-value=0.059 Score=59.93 Aligned_cols=23 Identities=48% Similarity=0.547 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+|+|+|++|||||||+++|.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 68999999999999999999985
No 466
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.25 E-value=0.12 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...+|+|.|.+||||||+-+.|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 467
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.15 E-value=0.13 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...+|+|+|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999999999998753
No 468
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.07 E-value=0.23 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+.+.|.|++|+|||||++++.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 469
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.07 E-value=0.12 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 007599 297 LATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLt 318 (596)
....+|+|+||||||||+.+|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3688999999999999999985
No 470
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.04 E-value=0.14 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
...+|+|+|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999973
No 471
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.03 E-value=0.1 Score=50.10 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 472
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.03 E-value=0.15 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 296 GLATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 296 ~~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..++|.|+|+|||||+|....|+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578889999999999999999763
No 473
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.00 E-value=0.097 Score=60.42 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++|+|++|||||||++.+.|.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 47999999999999999999874
No 474
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.99 E-value=0.71 Score=47.89 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|.|.|++|+|||+|.++|...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 475
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.94 E-value=0.13 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHC
Q 007599 299 TVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg 319 (596)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 476
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=90.84 E-value=0.1 Score=60.50 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+++|+|++|+|||||++.+.+.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 48999999999999999999874
No 477
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.84 E-value=0.94 Score=52.51 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..-|.|.|++|+|||+|.+++++.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999986
No 478
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.83 E-value=0.39 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+.++|++|+|||||.++|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999999874
No 479
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.71 E-value=0.11 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-+++|+|++|||||||++.|++.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999985
No 480
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.69 E-value=0.16 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|+|+|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 481
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.54 E-value=0.11 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
+.+.++|++|+|||||+++|.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4499999999999999999988
No 482
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.45 E-value=0.86 Score=47.68 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|.|.|++|+|||+|.++|...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999764
No 483
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.40 E-value=0.16 Score=48.23 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+.|.|++|+|||||++++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.13 E-value=0.18 Score=52.20 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+.|+|+|+||||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999999864
No 485
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.95 E-value=0.61 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
-|.|+|++|+|||||.+++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 486
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.94 E-value=0.18 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+.|.|++|+|||||+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 487
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.89 E-value=0.16 Score=46.15 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
..+.|.|++|+|||||++++...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998764
No 488
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.77 E-value=0.11 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=18.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg 319 (596)
.++|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.76 E-value=0.19 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..|.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 490
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.69 E-value=0.23 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+.|+|+|++|+|||||-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 491
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.58 E-value=0.18 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007599 298 ATVAVVGYTNAGKSTLVSALS 318 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLt 318 (596)
-.++|+|++|+|||||+..++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999976664
No 492
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.37 E-value=0.21 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHCC
Q 007599 299 TVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 299 ~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+|.|+|+|||||+|.-..|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 493
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.32 E-value=0.73 Score=53.41 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|.|+|++|+|||||+++|.+.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999986
No 494
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.32 E-value=0.21 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+.|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998763
No 495
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.17 E-value=0.26 Score=46.23 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSD 319 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg 319 (596)
..+.|.|++|+|||||++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.98 E-value=0.59 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...|.|.|++|+|||+|.+++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999874
No 497
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.72 E-value=0.2 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+.+.+.|++|+||||++++|++.
T Consensus 46 ~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 46 LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 355899999999999999999874
No 498
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.64 E-value=0.26 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
.+.|+|+|+||||||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 368899999999999999999753
No 499
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.57 E-value=0.25 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHCC
Q 007599 298 ATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 298 ~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
+.|+|+|++|||||||-..|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 500
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.53 E-value=0.2 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHCC
Q 007599 297 LATVAVVGYTNAGKSTLVSALSDS 320 (596)
Q Consensus 297 ~~~VaLVG~tgAGKSTLLNaLtg~ 320 (596)
...+.|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
Done!