BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007600
(596 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54947|YXEH_BACSU Uncharacterized protein YxeH OS=Bacillus subtilis (strain 168)
GN=yxeH PE=3 SV=1
Length = 270
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 16/274 (5%)
Query: 324 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 383
++ I DMDGTLLN +++ AL A + G+K+V+ TG+ V L +++L+
Sbjct: 2 YKLIAIDMDGTLLNDHHEVTEEVRDALHAAKAEGVKIVLCTGRPIGGVQRYLDELNLIEE 61
Query: 384 DGIISEFAPGVFIQGLLVHGRQGREIFRR-NLDRDFCREAYQYSWEHKVPLIAFSGDRCL 442
+ + G LV E+ +L D Y S E K P+ F
Sbjct: 62 GDYVIAY------NGALVQNTHTNEVVSELSLGYDDLTSLYDLSLELKTPMHFFDSSNLY 115
Query: 443 TLFDHPLVDSLHTTYHEPKAEIIP----AIEDLLATVDIQKLIFLDTAEGVATTIRPYWS 498
T P D T +E +P I+++ + I K++F+D E ++ I
Sbjct: 116 T----PNRDISEFTVYESYVTQVPLHFRKIDEVPKDILIPKVMFIDKPENLSRVITSIPK 171
Query: 499 EATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEMLELA 558
+ +++ +V++ P EI+ SKG+ V+ L LG+ E+M IGD ND+ M+E A
Sbjct: 172 D-VREKYTMVRSAPFFYEILHSEASKGNAVRQLAQLLGIEQAEVMCIGDNGNDLTMIEWA 230
Query: 559 SLGIALSNGSEKAKAVANVIGASNDEDGVADAIY 592
G+A++N + AN SN+E GVA AI+
Sbjct: 231 GCGVAMANAIPEVLEAANFQTRSNNEHGVAHAIH 264
>sp|P0A8Y7|YIDA_SHIFL Phosphatase YidA OS=Shigella flexneri GN=yidA PE=3 SV=1
Length = 270
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 132/281 (46%), Gaps = 22/281 (7%)
Query: 324 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 383
+ I DMDGTLL IS A+ A +RG+ VV+ TG+ V + LK++ +
Sbjct: 3 IKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME-- 60
Query: 384 DGIISEFAPG---VFIQGLLVH-GRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGD 439
PG + G LV G + + L D R + S E A D
Sbjct: 61 -------QPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHAL--D 111
Query: 440 RCLTLFDHPLVDSLHTTYHEPKAEIIPAI----EDLLATVDIQKLIFLDTAEGVATTIRP 495
R TL+ D + T HE IP + E + K++ +D + I
Sbjct: 112 RT-TLYTANR-DISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIAR 169
Query: 496 YWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEML 555
E K++ V+++ P LEI+ +KG+GVK L D LG+ +EIMAIGD END+ M+
Sbjct: 170 IPQE-VKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMI 228
Query: 556 ELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRYAF 596
E A +G+A+ N K VAN + SN EDGVA AI +Y
Sbjct: 229 EYAGVGVAMDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVL 269
>sp|P0A8Y5|YIDA_ECOLI Sugar phosphatase YidA OS=Escherichia coli (strain K12) GN=yidA
PE=1 SV=1
Length = 270
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 132/281 (46%), Gaps = 22/281 (7%)
Query: 324 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 383
+ I DMDGTLL IS A+ A +RG+ VV+ TG+ V + LK++ +
Sbjct: 3 IKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME-- 60
Query: 384 DGIISEFAPG---VFIQGLLVH-GRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGD 439
PG + G LV G + + L D R + S E A D
Sbjct: 61 -------QPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHAL--D 111
Query: 440 RCLTLFDHPLVDSLHTTYHEPKAEIIPAI----EDLLATVDIQKLIFLDTAEGVATTIRP 495
R TL+ D + T HE IP + E + K++ +D + I
Sbjct: 112 RT-TLYTANR-DISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIAR 169
Query: 496 YWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEML 555
E K++ V+++ P LEI+ +KG+GVK L D LG+ +EIMAIGD END+ M+
Sbjct: 170 IPQE-VKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMI 228
Query: 556 ELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRYAF 596
E A +G+A+ N K VAN + SN EDGVA AI +Y
Sbjct: 229 EYAGVGVAMDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVL 269
>sp|P0A8Y6|YIDA_ECOL6 Phosphatase YidA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=yidA PE=3 SV=1
Length = 270
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 132/281 (46%), Gaps = 22/281 (7%)
Query: 324 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 383
+ I DMDGTLL IS A+ A +RG+ VV+ TG+ V + LK++ +
Sbjct: 3 IKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME-- 60
Query: 384 DGIISEFAPG---VFIQGLLVH-GRQGREIFRRNLDRDFCREAYQYSWEHKVPLIAFSGD 439
PG + G LV G + + L D R + S E A D
Sbjct: 61 -------QPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHAL--D 111
Query: 440 RCLTLFDHPLVDSLHTTYHEPKAEIIPAI----EDLLATVDIQKLIFLDTAEGVATTIRP 495
R TL+ D + T HE IP + E + K++ +D + I
Sbjct: 112 RT-TLYTANR-DISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIAR 169
Query: 496 YWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEML 555
E K++ V+++ P LEI+ +KG+GVK L D LG+ +EIMAIGD END+ M+
Sbjct: 170 IPQE-VKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMI 228
Query: 556 ELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRYAF 596
E A +G+A+ N K VAN + SN EDGVA AI +Y
Sbjct: 229 EYAGVGVAMDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVL 269
>sp|Q5XD45|Y533_STRP6 Putative hydrolase M6_Spy0533 OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=M6_Spy0533 PE=1
SV=1
Length = 269
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 139/282 (49%), Gaps = 25/282 (8%)
Query: 324 FRYIFCDMDGTLLNSQSKISLTTAKALKEALSRGLKVVVATGKTRPAVISALKKVDLVGR 383
+ + D+DGTLL +I+ +A++EA ++G+ VV+ATG+ VIS L++++L +
Sbjct: 3 IKLVAVDIDGTLLTDDRRITDDVFQAVQEAKAQGVHVVIATGRPIAGVISLLEQLELNHK 62
Query: 384 DGIISEFAPGVFIQGLLVHGRQGREIFRRNLDRDFCREAYQYSWEHKVPLIA------FS 437
+ F GL+ G EI + + D E S + V + A ++
Sbjct: 63 GNHVITFN-----GGLVQDAETGEEIVKELMTYDDYLETEFLSRKLGVHMHAITKEGIYT 117
Query: 438 GDRCL---TLFDHPLVDSLHTTYHEPKAEIIPAIEDLLATVDIQKLIFLDTAEGVATTIR 494
+R + T+ + LV+ + Y P+ + +I K++ +D + + I+
Sbjct: 118 ANRNIGKYTVHESTLVN-MPIFYRTPEE---------MTNKEIIKMMMIDEPDLLDAAIK 167
Query: 495 PYWSEATKDRANVVQAIPDMLEIVPPGTSKGSGVKMLLDHLGVSTKEIMAIGDGENDVEM 554
+ D+ +V++ P LE +P SKG+ +K L LG+ + MAIGD END M
Sbjct: 168 QI-PQHFFDKYTIVKSTPFYLEFMPKTVSKGNAIKHLAKKLGLDMSQTMAIGDAENDRAM 226
Query: 555 LELASLGIALSNGSEKAKAVANVIGASNDEDGVADAIYRYAF 596
LE+ + + + NG + K +A I SN++ GVA AI ++
Sbjct: 227 LEVVANPVVMENGVPELKKIAKYITKSNNDSGVAHAIRKWVL 268
>sp|Q2ILG1|YBEY_ANADE Endoribonuclease YbeY OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=ybeY PE=3 SV=1
Length = 193
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 167 GFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETA 226
G E ELSIL + IR LN+EWR +D ATDVLS + E +LGD+VIS++TA
Sbjct: 31 GREDAELSILLVTDRRIRTLNREWRQKDQATDVLSFP--ISEPPGAGALLGDVVISLDTA 88
Query: 227 ARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLGWKGKGLI 286
AR+A G + E+ + HG+LHLLG+DHE +A A EK E + +GL+
Sbjct: 89 ARRARSDGRRVGAELDRYLAHGILHLLGYDHERPADARAMAEKEAELA------RAEGLV 142
Query: 287 QSA 289
+A
Sbjct: 143 GAA 145
>sp|O67367|YBEY_AQUAE Endoribonuclease YbeY OS=Aquifex aeolicus (strain VF5) GN=ybeY PE=1
SV=1
Length = 150
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 6/114 (5%)
Query: 167 GFESIELSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPILMLGDIVISVE 224
G ++ELS+ +++ IR+LNK +R +D TDVLS M + K+ LGD+VIS +
Sbjct: 37 GLNNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMGEEFGGYKI----LGDVVISQD 92
Query: 225 TAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSL 278
TA RQA E GHSL +E++ L+VHG++HLLG+DHE E E + + E ++L L
Sbjct: 93 TAERQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKL 146
>sp|Q7VE08|YBEY_PROMA Endoribonuclease YbeY OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=ybeY PE=3 SV=1
Length = 195
Score = 94.4 bits (233), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 173 LSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLP---ILMLGDIVISVETAARQ 229
+ +LF N+ IR++NKEWR +D +TDVLS + LP L LGDI++SVETA +Q
Sbjct: 76 MGLLFTNDLSIRQMNKEWRKKDESTDVLSFPAIDEHIVLPPNQFLELGDIIVSVETAFKQ 135
Query: 230 AEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQS 277
A+ HSL+ E+R L+ HG LHLLG+DH S + EM +E LL++
Sbjct: 136 AKIHNHSLMHELRWLVSHGFLHLLGWDHP-SSASLNEMLSFQELLLKT 182
>sp|Q65H70|YBEY_BACLD Endoribonuclease YbeY OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=ybeY PE=3 SV=1
Length = 158
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 77/115 (66%), Gaps = 8/115 (6%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-QHVPELKLPIL------MLGDIVISVE 224
E+S+ NNE I+K+NKE+R +D+ TDV+S + + E ++ I+ +LGDI+ISV+
Sbjct: 40 EVSVTIVNNEEIQKINKEYRGKDYPTDVISFALEEDGEGEVEIIGADMPPVLGDIIISVD 99
Query: 225 TAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHSL+ E+ L VHG LHLLG+DH ++EE E EM ++ +L G
Sbjct: 100 KAREQAEEYGHSLMRELGFLTVHGFLHLLGYDH-MTEEEEKEMFTKQKEILNRYG 153
>sp|B9MRS0|YBEY_CALBD Endoribonuclease YbeY OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=ybeY PE=3 SV=1
Length = 158
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 77/123 (62%), Gaps = 14/123 (11%)
Query: 169 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILM-----------LG 217
E+ E+S+L +N FI++LN+ +R+ + TDVLS + E K L+ LG
Sbjct: 37 ENFEISVLIVDNSFIKELNRNYRNVNKETDVLSFP--IFEFKNGKLLEDIVIMEDEIPLG 94
Query: 218 DIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQS 277
DIVIS+E AA+QA+E GHSL EI L VH +LHLLGFDH I E+ M + EE +LQS
Sbjct: 95 DIVISIEKAAQQAKEFGHSLEREIAYLTVHSVLHLLGFDH-IEEDDRKVMREYEEQILQS 153
Query: 278 LGW 280
+G
Sbjct: 154 MGL 156
>sp|B0TAE8|YBEY_HELMI Endoribonuclease YbeY OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=ybeY PE=3 SV=1
Length = 166
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 83/147 (56%), Gaps = 21/147 (14%)
Query: 142 LMKLAFDSLKDSTYKTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLS 201
L +LAF L++ Y DT E+S++ N+E IR+LN E+R+ D TDVLS
Sbjct: 26 LEQLAFACLEEVGYPLEDT-----------EISLVLTNDEKIRRLNAEYRNIDQPTDVLS 74
Query: 202 MSQHVP-------ELKLPIL--MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHL 252
+ P +LGDI+ISVETA RQA+E GHSL E+ L VHG+LHL
Sbjct: 75 FAMEEGLDDEADFHFDDPTAGKVLGDIIISVETAERQAQEYGHSLEREMGFLFVHGMLHL 134
Query: 253 LGFDHEISEEAEAEMEKNEEFLLQSLG 279
LG+DH EE + M EE +L++ G
Sbjct: 135 LGYDH-CDEEQRSRMRALEEKILRNQG 160
>sp|A4XKI9|YBEY_CALS8 Endoribonuclease YbeY OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=ybeY PE=3 SV=1
Length = 158
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 82/142 (57%), Gaps = 20/142 (14%)
Query: 150 LKDSTYKTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSM------- 202
++DS T ++D E+ E+S++ +N+FI++LNK +R D TDVLS
Sbjct: 22 IEDSVLNTLKIFMDD----ENYEISVMIVDNQFIKELNKHYRSIDKETDVLSFPIFEFKN 77
Query: 203 -----SQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 257
+ E ++P LGDIVIS+E A QA+E GHS+ EI L VH +LHLLGFDH
Sbjct: 78 GELQEDIAIVEEEIP---LGDIVISIEKAYEQAKEFGHSVEREIAYLTVHSVLHLLGFDH 134
Query: 258 EISEEAEAEMEKNEEFLLQSLG 279
I EE M K EE +L+ +G
Sbjct: 135 -IEEEDRMLMRKYEEMVLEGMG 155
>sp|B2V7H6|YBEY_SULSY Endoribonuclease YbeY OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
GN=ybeY PE=3 SV=1
Length = 152
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 167 GFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETA 226
++E+SI +NE IR++NKEWR +D TDVLS Q + +LGD++IS+ A
Sbjct: 38 NLNNVEISITLTDNERIREINKEWRGKDKPTDVLSFPQD-ETIGYKYRLLGDVIISLPYA 96
Query: 227 ARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEE 262
QAEE G +L +E+ L+VHG+LHLLG+DHE +EE
Sbjct: 97 KAQAEEIGLTLREEVLRLLVHGILHLLGYDHETNEE 132
>sp|A9VHT0|YBEY_BACWK Endoribonuclease YbeY OS=Bacillus weihenstephanensis (strain KBAB4)
GN=ybeY PE=3 SV=1
Length = 156
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 169 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL-------MLGDIVI 221
E ELS+ F +NE IR++N+++RD+D TDV+S + + MLGD++I
Sbjct: 37 EGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLII 96
Query: 222 SVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
S+ A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 97 SIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|Q6HDL8|YBEY_BACHK Endoribonuclease YbeY OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=ybeY PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|Q634N8|YBEY_BACCZ Endoribonuclease YbeY OS=Bacillus cereus (strain ZK / E33L) GN=ybeY
PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|B9IY70|YBEY_BACCQ Endoribonuclease YbeY OS=Bacillus cereus (strain Q1) GN=ybeY PE=3
SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|B7HPK2|YBEY_BACC7 Endoribonuclease YbeY OS=Bacillus cereus (strain AH187) GN=ybeY
PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|C1ESJ7|YBEY_BACC3 Endoribonuclease YbeY OS=Bacillus cereus (strain 03BB102) GN=ybeY
PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|B7JN28|YBEY_BACC0 Endoribonuclease YbeY OS=Bacillus cereus (strain AH820) GN=ybeY
PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|Q81LT4|YBEY_BACAN Endoribonuclease YbeY OS=Bacillus anthracis GN=ybeY PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|A0RIS3|YBEY_BACAH Endoribonuclease YbeY OS=Bacillus thuringiensis (strain Al Hakam)
GN=ybeY PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|C3L5Q6|YBEY_BACAC Endoribonuclease YbeY OS=Bacillus anthracis (strain CDC 684 / NRRL
3495) GN=ybeY PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|C3P8K9|YBEY_BACAA Endoribonuclease YbeY OS=Bacillus anthracis (strain A0248) GN=ybeY
PE=3 SV=1
Length = 156
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISV 223
ELS+ F +NE IR++N+++RD+D TDV+S + + +++P MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMP-RMLGDLIISI 98
Query: 224 ETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 99 PRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|Q730N3|YBEY_BACC1 Endoribonuclease YbeY OS=Bacillus cereus (strain ATCC 10987)
GN=ybeY PE=3 SV=1
Length = 156
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL-------MLGDIVISVE 224
ELS+ F +NE IR++N+++RD+D TDV+S + + MLGD++IS+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIP 99
Query: 225 TAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 100 RAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|A9IMW1|YBEY_BART1 Endoribonuclease YbeY OS=Bartonella tribocorum (strain CIP 105476 /
IBS 506) GN=ybeY PE=3 SV=1
Length = 163
Score = 89.4 bits (220), Expect = 9e-17, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 150 LKDSTYKTRDTAVEDVGGFESI--ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-V 206
L + T K TA+ V E++ E+S+LF ++E + K+N +WR ++ +T+VLS +
Sbjct: 19 LYNITEKALTTAMHHVS-LENVVSEISLLFTDDEHMAKINAQWRGKNKSTNVLSFPAFPI 77
Query: 207 PELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAE 266
P MLGDI+I+ ET +AE++G + D + ++VHG+LHLLG+DHE +EA +
Sbjct: 78 KAGNPPGPMLGDIIIARETVVLEAEKQGKTFQDHLTHMIVHGILHLLGYDHETDDEAH-Q 136
Query: 267 MEKNEEFLLQSLGWK 281
MEK E +LQ L K
Sbjct: 137 MEKLEREILQKLSIK 151
>sp|B7IYF4|YBEY_BACC2 Endoribonuclease YbeY OS=Bacillus cereus (strain G9842) GN=ybeY
PE=3 SV=1
Length = 156
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL-------MLGDIVISVE 224
E+S+ F +NE IR++N+++RD+D TDV+S + + MLGD++IS+
Sbjct: 40 EVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIP 99
Query: 225 TAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 100 RAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEEEKEMFGRQKEILEAFG 153
>sp|A5D3W2|YBEY_PELTS Endoribonuclease YbeY OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=ybeY PE=3 SV=1
Length = 152
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 169 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPI------LMLGDIVIS 222
E E+S++F ++ +I LN+++R D TDVLS + E P+ L+LGD+VIS
Sbjct: 37 EEAEVSLVFVDDAYIHGLNRQYRGVDAPTDVLSFAMQEGE---PLAGGEEELILGDVVIS 93
Query: 223 VETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFL 274
++ A RQA E GHSL E L VHG+LHLLG+DH+ EE + K EE L
Sbjct: 94 LQAAERQAGEYGHSLQREAAYLAVHGVLHLLGYDHQGEEERKIMRRKEEEVL 145
>sp|P67133|YBEY_BRUSU Endoribonuclease YbeY OS=Brucella suis biovar 1 (strain 1330)
GN=ybeY PE=3 SV=1
Length = 168
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQA 230
ELS++F ++ I+ LN EWR +D T+VLS V P MLGDIVI+ ET R+A
Sbjct: 46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREA 105
Query: 231 EERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
+E G + + + L+VHG LHLLG+DHE EEAE ME E +L +L
Sbjct: 106 KEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEV-MEAREREILHALA 153
>sp|B0CK02|YBEY_BRUSI Endoribonuclease YbeY OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=ybeY PE=3 SV=1
Length = 168
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQA 230
ELS++F ++ I+ LN EWR +D T+VLS V P MLGDIVI+ ET R+A
Sbjct: 46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREA 105
Query: 231 EERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
+E G + + + L+VHG LHLLG+DHE EEAE ME E +L +L
Sbjct: 106 KEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEV-MEAREREILHALA 153
>sp|P67132|YBEY_BRUME Endoribonuclease YbeY OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=ybeY PE=3 SV=1
Length = 168
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQA 230
ELS++F ++ I+ LN EWR +D T+VLS V P MLGDIVI+ ET R+A
Sbjct: 46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREA 105
Query: 231 EERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
+E G + + + L+VHG LHLLG+DHE EEAE ME E +L +L
Sbjct: 106 KEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEV-MEAREREILHALA 153
>sp|C0RG38|YBEY_BRUMB Endoribonuclease YbeY OS=Brucella melitensis biotype 2 (strain ATCC
23457) GN=ybeY PE=3 SV=1
Length = 168
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQA 230
ELS++F ++ I+ LN EWR +D T+VLS V P MLGDIVI+ ET R+A
Sbjct: 46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREA 105
Query: 231 EERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
+E G + + + L+VHG LHLLG+DHE EEAE ME E +L +L
Sbjct: 106 KEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEV-MEAREREILHALA 153
>sp|A9M9Y5|YBEY_BRUC2 Endoribonuclease YbeY OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=ybeY PE=3 SV=1
Length = 168
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQA 230
ELS++F ++ I+ LN EWR +D T+VLS V P MLGDIVI+ ET R+A
Sbjct: 46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREA 105
Query: 231 EERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
+E G + + + L+VHG LHLLG+DHE EEAE ME E +L +L
Sbjct: 106 KEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEV-MEAREREILHALA 153
>sp|Q57AA9|YBEY_BRUAB Endoribonuclease YbeY OS=Brucella abortus biovar 1 (strain 9-941)
GN=ybeY PE=3 SV=2
Length = 168
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQA 230
ELS++F ++ I+ LN EWR +D T+VLS V P MLGDIVI+ ET R+A
Sbjct: 46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREA 105
Query: 231 EERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
+E G + + + L+VHG LHLLG+DHE EEAE ME E +L +L
Sbjct: 106 KEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEV-MEAREREILHALA 153
>sp|Q2YQS6|YBEY_BRUA2 Endoribonuclease YbeY OS=Brucella abortus (strain 2308) GN=ybeY
PE=3 SV=2
Length = 168
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQA 230
ELS++F ++ I+ LN EWR +D T+VLS V P MLGDIVI+ ET R+A
Sbjct: 46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREA 105
Query: 231 EERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
+E G + + + L+VHG LHLLG+DHE EEAE ME E +L +L
Sbjct: 106 KEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAEV-MEAREREILHALA 153
>sp|B7HCS7|YBEY_BACC4 Endoribonuclease YbeY OS=Bacillus cereus (strain B4264) GN=ybeY
PE=3 SV=1
Length = 156
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL-------MLGDIVISVE 224
E+S+ F +NE IR++N+++RD+D TDV+S + + MLGD++IS+
Sbjct: 40 EVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIP 99
Query: 225 TAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 100 RAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|Q812T1|YBEY_BACCR Endoribonuclease YbeY OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=ybeY PE=3 SV=1
Length = 156
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 8/115 (6%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL-------MLGDIVISVE 224
E+S+ F +NE IR++N+++RD+D TDV+S + + MLGD++IS+
Sbjct: 40 EVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIP 99
Query: 225 TAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
A QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L++ G
Sbjct: 100 RAKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGRQKEILEAFG 153
>sp|B0SSV4|YBEY_LEPBP Endoribonuclease YbeY OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=ybeY PE=3 SV=1
Length = 154
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 31/157 (19%)
Query: 119 EDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDSTYKTRDTAVEDVGGFESIELSILFC 178
+ E+ DP + N ++LR AP + S+ELSI
Sbjct: 17 QSEIFSDPVISNCEKILRFLAPEFLH-------------------------SLELSIYLV 51
Query: 179 NNEFIRKLNKEWRDEDHATDVLSM---SQHVPELKLPILMLGDIVISVETAARQAEERGH 235
N+ + ++N+E R + TDVLS S+H P +P+ +LG++VIS+ET +QA E GH
Sbjct: 52 NDSLMAEINEERRGKPATTDVLSFPLYSEHPP---IPVQILGEVVISMETCKKQAMEIGH 108
Query: 236 SLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEE 272
L+DE L+VHG+LH G+DHE +EE M K E+
Sbjct: 109 GLVDEFYRLLVHGILHNFGYDHETNEEDALLMRKMED 145
>sp|B0SB32|YBEY_LEPBA Endoribonuclease YbeY OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=ybeY PE=3 SV=1
Length = 154
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 31/157 (19%)
Query: 119 EDELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDSTYKTRDTAVEDVGGFESIELSILFC 178
+ E+ DP + N ++LR AP + S+ELSI
Sbjct: 17 QSEIFSDPVISNCEKILRFLAPEFLH-------------------------SLELSIYLV 51
Query: 179 NNEFIRKLNKEWRDEDHATDVLSM---SQHVPELKLPILMLGDIVISVETAARQAEERGH 235
N+ + ++N+E R + TDVLS S+H P +P+ +LG++VIS+ET +QA E GH
Sbjct: 52 NDSLMAEINEERRGKPATTDVLSFPLYSEHPP---IPVQILGEVVISMETCKKQAMEIGH 108
Query: 236 SLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEE 272
L+DE L+VHG+LH G+DHE +EE M K E+
Sbjct: 109 GLVDEFYRLLVHGILHNFGYDHETNEEDALLMRKMED 145
>sp|A4IR19|YBEY_GEOTN Endoribonuclease YbeY OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=ybeY PE=3 SV=1
Length = 156
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 71/127 (55%), Gaps = 21/127 (16%)
Query: 161 AVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-------------QHVP 207
AVE+V E E+S+ F +NE IR +N+++R +D TDVLS + VP
Sbjct: 31 AVENVP--EGAEVSVSFVDNERIRVMNRDYRGKDAPTDVLSFALEEEGEGEIDIIGADVP 88
Query: 208 ELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEM 267
P+L GDI+IS+ A QA E GHS + E+ L VHG LHLLG+DHE EE
Sbjct: 89 ----PVL--GDIIISIPKAKEQAAEYGHSFMRELGFLAVHGFLHLLGYDHETEEEERVMF 142
Query: 268 EKNEEFL 274
K EE L
Sbjct: 143 AKQEEIL 149
>sp|A1UU41|YBEY_BARBK Endoribonuclease YbeY OS=Bartonella bacilliformis (strain ATCC
35685 / KC583) GN=ybeY PE=3 SV=1
Length = 158
Score = 87.4 bits (215), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 10/115 (8%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKL-----PILMLGDIVISVETA 226
ELS+LF NN + ++N +WR+++ T+VLS P L P MLGDIV++ ET
Sbjct: 42 ELSLLFTNNMRMAQINTQWRNKNKPTNVLSF----PAFPLKAGQNPGPMLGDIVLARETI 97
Query: 227 ARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLGWK 281
+AEE G S D + ++VHG+LHLLG+DHE +EA +ME+ E+ +LQ + K
Sbjct: 98 VYEAEEEGKSFHDHLTHMIVHGILHLLGYDHETDDEA-YQMEELEKEILQKIAIK 151
>sp|A4J7D9|YBEY_DESRM Endoribonuclease YbeY OS=Desulfotomaculum reducens (strain MI-1)
GN=ybeY PE=3 SV=1
Length = 153
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL----MLGDIVISVETAA 227
E+ ++F ++ +IR LN E+R D ATDVLS + + E +LGDIVIS+ TA
Sbjct: 40 EVGLIFVDDNYIRSLNAEYRGIDKATDVLSFALNEGEEMPEEEEAEDLLGDIVISLPTAQ 99
Query: 228 RQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
RQA E GHS E+ L HG LHLLG+DH ++EE M + EE +L+ LG
Sbjct: 100 RQAAEYGHSFNREVAYLTAHGSLHLLGYDH-MTEEDRQVMRQKEEGILERLG 150
>sp|Q7U3W4|YBEY_SYNPX Endoribonuclease YbeY OS=Synechococcus sp. (strain WH8102) GN=ybeY
PE=3 SV=1
Length = 185
Score = 87.0 bits (214), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 169 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS--QHVPEL-KLPILMLGDIVISVET 225
+ + L + F ++ I LN WR + ATDVLS + + P L + + LGDIVIS++T
Sbjct: 54 DEVSLGLRFTDDATITALNSTWRQRNQATDVLSFAALEEAPGLPDVSCVELGDIVISLDT 113
Query: 226 AARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFL 274
A RQA E GH+L E+R L+ HGLLHLLG+DH E A ++ E+ L
Sbjct: 114 ARRQASEHGHNLTRELRWLVSHGLLHLLGWDHPDEESLVAMLQLQEQLL 162
>sp|A8MG66|YBEY_ALKOO Endoribonuclease YbeY OS=Alkaliphilus oremlandii (strain OhILAs)
GN=ybeY PE=3 SV=1
Length = 151
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 15/150 (10%)
Query: 143 MKLAFDSLKDSTYKTRDTAVEDVG----------GFE-SIELSILFCNNEFIRKLNKEWR 191
M+L D+ +D Y+ D +E + G+E E+S+ F +N+ I+ LN +R
Sbjct: 1 MELLIDNRQDR-YEITDALIELINKAVEACLIYEGWEIDYEVSLSFVDNQEIQALNHTYR 59
Query: 192 DEDHATDVLS--MSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGL 249
+D+ATDVLS + + L L +LGDIVISVE AA QA+E HS E+ L+VH +
Sbjct: 60 GKDYATDVLSFPLIEENQGLDLEEKLLGDIVISVEKAAEQAKEYNHSFEREMGFLVVHSM 119
Query: 250 LHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
HL+G+DH+ +EA A+M K EE +L ++
Sbjct: 120 FHLMGYDHD-HDEATADMRKREEAVLTAIN 148
>sp|C3K2K8|YBEY_PSEFS Endoribonuclease YbeY OS=Pseudomonas fluorescens (strain SBW25)
GN=ybeY PE=3 SV=1
Length = 164
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAE 231
EL+I + R+LN WR +D+AT+VLS VP+ L I +LGD+VI VE R+A+
Sbjct: 36 ELTIRLVDEPEGRELNHTWRQKDYATNVLSFPADVPDELLDIPLLGDLVICVEVVEREAK 95
Query: 232 ERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLG 279
E+G L L++HG LHLLG+DH +EAE EME E+ LL LG
Sbjct: 96 EQGKELEAHWAHLVIHGCLHLLGYDHIDDDEAE-EMETLEQTLLAELG 142
>sp|A7GSZ7|YBEY_BACCN Endoribonuclease YbeY OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=ybeY PE=3 SV=1
Length = 156
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 8/120 (6%)
Query: 169 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-QHVPELKLPIL------MLGDIVI 221
+ ELS+ F +NE IR++N+++R +D TDV+S + + + E ++ I+ MLGD++I
Sbjct: 37 DGTELSVTFVDNERIREINRDYRGKDQPTDVISFALEDMGEGEVEIIGADMPRMLGDLII 96
Query: 222 SVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSLGWK 281
S+ QAEE GHS E+ L +HG LHLLG+DH ++EE E EM ++ +L + G +
Sbjct: 97 SIPRTKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEMFGKQKEILGAFGLR 155
>sp|A6WWX4|YBEY_OCHA4 Endoribonuclease YbeY OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=ybeY PE=3 SV=1
Length = 162
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQA 230
ELS++F ++ I+ LN EWR +D T+VLS V P MLGDI+I+ ET R+A
Sbjct: 46 ELSVVFTDDASIQTLNAEWRGKDKPTNVLSFPAFPVKAGAQPGPMLGDIIIARETVEREA 105
Query: 231 EERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQSL 278
E G L + + L+VHG LHLLG+DHE EAE ME E +L +L
Sbjct: 106 REEGKPLENHLAHLVVHGFLHLLGYDHETDAEAEV-MEGREREILHAL 152
>sp|Q47Y78|YBEY_COLP3 Endoribonuclease YbeY OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=ybeY PE=3 SV=1
Length = 155
Score = 86.7 bits (213), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 4/123 (3%)
Query: 159 DTAVEDVGGF--ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILML 216
DTA+ +V + EL+I NNE ++LNK++RD+D T+VLS VP+ + + +L
Sbjct: 27 DTALAEVSSSPNQDFELTIRLVNNEESQQLNKQYRDKDKPTNVLSFPFEVPD-GIELNLL 85
Query: 217 GDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQ 276
GD++I +E ++A+E+ +L + L++HG LHL+GFDH IS+ EME E +L+
Sbjct: 86 GDLIICIEVMKQEAQEQNKALFEHWAHLVIHGCLHLVGFDH-ISDTEALEMESIEITILE 144
Query: 277 SLG 279
LG
Sbjct: 145 KLG 147
>sp|A5GW90|YBEY_SYNR3 Endoribonuclease YbeY OS=Synechococcus sp. (strain RCC307) GN=ybeY
PE=3 SV=1
Length = 160
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 69/112 (61%), Gaps = 6/112 (5%)
Query: 169 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS--QHVPEL--KLPILMLGDIVISVE 224
++ L + FC++ I +LN +WR + TDVLS + + PE LPI LGDIVIS+
Sbjct: 46 DAYSLGLQFCDDAAIAELNGQWRQQPKPTDVLSFAAQEDAPEPLEGLPI-ELGDIVISIP 104
Query: 225 TAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKNEEFLLQ 276
TA RQA E GHSL E+ L HGLLHLLG+DH E + A M ++ L+Q
Sbjct: 105 TAERQAPEHGHSLQQELLFLASHGLLHLLGWDHP-DEASLAAMLSRQDALVQ 155
>sp|B8ETG9|YBEY_METSB Endoribonuclease YbeY OS=Methylocella silvestris (strain BL2 / DSM
15510 / NCIMB 13906) GN=ybeY PE=3 SV=1
Length = 176
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAE 231
E+SI+FC++ FI LN++WR D T+VLS P P+L GDIVI+ ET R+A+
Sbjct: 44 EISIVFCDDAFIADLNRKWRGVDKPTNVLSFPSGGPIAVTPVL--GDIVIAYETTEREAQ 101
Query: 232 ERGHSLLDEIRILMVHGLLHLLGFDH 257
E G D + L+ HG LHL+G+DH
Sbjct: 102 EAGKPFRDHVAHLIAHGFLHLIGYDH 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,868,642
Number of Sequences: 539616
Number of extensions: 9030180
Number of successful extensions: 32299
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 30450
Number of HSP's gapped (non-prelim): 1260
length of query: 596
length of database: 191,569,459
effective HSP length: 123
effective length of query: 473
effective length of database: 125,196,691
effective search space: 59218034843
effective search space used: 59218034843
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)