BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007601
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 92.8 bits (229), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/64 (62%), Positives = 56/64 (87%)
Query: 216 STTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYL 275
+ KKPRV+W+ ELH +F++AV+ LG+++AVPK+IL+LMNV LTRENVASHLQKFR+ L
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
Query: 276 KRLN 279
K+++
Sbjct: 61 KKVS 64
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M +A+ + ++ + GA Y++KP EE+L I
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 146 WQHV 149
++ +
Sbjct: 120 FEKL 123
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 59
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 146 WQHV 149
++ +
Sbjct: 120 FEKL 123
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+++L+VDD T RI++ +LR +N T AL +L+ KG FD V++D +MP M
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 70
Query: 93 DGFKLLEHIGLEMD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
G LL++I + + LPV+M++A+ + ++ + G Y++KP LK
Sbjct: 71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLK 124
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + V+ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+VDDD T LE +LR Y V + AL + K D ++ DV +P +DG+
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIY--KNLPDALICDVLLPGIDGY 64
Query: 96 KLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL----KNI 145
L + + L LP++ ++A G +SA + G GA DYL KP +EL KNI
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNI 121
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ + +L L+ + V T + A ALD RE + D V+ DV P DG
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVXXPGXDG 82
Query: 95 FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153
F +L + + +D P + ++A + + G+ G DY+ KP EE+ + ++R+
Sbjct: 83 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142
Query: 154 WNENKEHEN 162
NKE N
Sbjct: 143 GKGNKEPRN 151
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWRMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 64
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 146 WQHV 149
++ +
Sbjct: 125 FEKL 128
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD+ T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWMMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G F ++SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNM 63
Query: 93 DGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I + LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G F ++SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIISDWNMPNM 62
Query: 93 DGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I + LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWKMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++++ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M+ A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 146 WQHV 149
++ +
Sbjct: 127 FEKL 130
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 146 WQHV 149
++ +
Sbjct: 127 FEKL 130
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++ + + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA +++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 146 WQHV 149
++ +
Sbjct: 127 FEKL 130
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHIGLEMD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWDMPNM 66
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A + ++ + GA Y++KP EE+L I
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 146 WQHV 149
++ +
Sbjct: 127 FEKL 130
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILR-ERKGCFDVVLSDVHMPDMDG 94
V VVDDD++ L +LR + V T A+ L+ R E+ GC ++ D+ MP M G
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGC---LVLDMRMPGMSG 63
Query: 95 FKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153
+L E + D +P++ ++A G + +R ++ GA ++L KP E+ L + + ++
Sbjct: 64 IELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123
Query: 154 WNENKEHENSGSLEE 168
+ E LE+
Sbjct: 124 AERRQARETQDQLEQ 138
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G F ++ D +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGFGFIICDWNMPNM 62
Query: 93 DGFKLLEHIGLEMD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I + LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD+ ILE LR+ Y V A++++ E + D++L D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 95 FKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEEL 142
++ + + D+P+IM++A D + V+ G+ GA DY+ KP EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVI-GLEIGADDYVTKPFSTREL 109
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD+ ILE LR+ Y V A++++ E + D++L D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 95 FKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEEL 142
++ + + D+P+IM++A D + V+ G+ GA DY+ KP EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVI-GLEIGADDYVTKPFSTREL 109
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 61
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 121
Query: 146 WQHV 149
++ +
Sbjct: 122 FEKL 125
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
A V ++DDD + ++Q L + V++ + A AL L +V+SD+ MP
Sbjct: 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFA--GIVISDIRMPG 59
Query: 92 MDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150
MDG L I L+ DLP+I+++ G + ++ I+ GA D++ KP + L +
Sbjct: 60 MDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119
Query: 151 RKR 153
+KR
Sbjct: 120 KKR 122
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISAWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVV D T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 64
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 146 WQHV 149
++ +
Sbjct: 125 FEKL 128
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 63
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + + GA Y++KP EE+L I
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 146 WQHV 149
++ +
Sbjct: 124 FEKL 127
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD +R+LE L Y V+T AL + + D++L DV MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 60
Query: 95 FKL---LEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150
F + L+ +PV++++A DGR + +G+ GA D+L KPI + L + +
Sbjct: 61 FTVCRKLKDDPTTRHIPVVLITALDGRGDRI-QGLESGASDFLTKPIDDVMLFARVRSLT 119
Query: 151 RKRW--NENKEHENSG 164
R + +E ++ E SG
Sbjct: 120 RFKLVIDELRQREASG 135
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER---KGCFDVVLSDVHM 89
G RVL+VDD+ E+ +R + + + D + + G D+V+ +
Sbjct: 152 GGRVLIVDDN-------ERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAA 204
Query: 90 PDMDGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK-NI 145
+ DG + + E LPV+ M +++ + G D L +PI +EL +
Sbjct: 205 KNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARV 264
Query: 146 WQHVVRKRWNENKEHENSGSLE 167
+ RKR+ + + SLE
Sbjct: 265 KTQIQRKRYTDYLRNNLDHSLE 286
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M+ A+ + ++ + GA +++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDDD + +L +LR ++ AL +RE + D+VL D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEE 141
+ + + +P++M++A V+ G+ GA DY++KP + +E
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD +R+LE L Y V+T AL + + D++L DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 61
Query: 95 FKL---LEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150
F + L+ +PV++++A DGR + +G+ GA D+L KPI + L + +
Sbjct: 62 FTVCRKLKDDPTTRHIPVVLITALDGRGDRI-QGLESGASDFLTKPIDDVMLFARVRSLT 120
Query: 151 RKRW--NENKEHENSG 164
R + +E ++ E SG
Sbjct: 121 RFKLVIDELRQREASG 136
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER---KGCFDVVLSDVHM 89
G RVL+VDD+ E+ +R + + + D + + G D+V+ +
Sbjct: 153 GGRVLIVDDN-------ERQAQRVAAELGVEHRPVIESDPEKAKISAGGPVDLVIVNAAA 205
Query: 90 PDMDGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK-NI 145
+ DG + + E LPV+ M +++ + G D L +PI +EL +
Sbjct: 206 KNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARV 265
Query: 146 WQHVVRKRWNENKEHENSGSLE 167
+ RKR+ + + SLE
Sbjct: 266 KTQIQRKRYTDYLRNNLDHSLE 287
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
A V ++DDD + ++Q L + V++ + A AL L +V+SD+ MP
Sbjct: 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFA--GIVISDIRMPG 59
Query: 92 MDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150
MDG L I L+ DLP+I+++ G + ++ I+ GA D++ KP + L +
Sbjct: 60 MDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119
Query: 151 RKR 153
KR
Sbjct: 120 EKR 122
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M+ A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT L L + DV+LSD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEE 141
LL+ I LPVI+M+A + A + + GA DYL KP +E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 21 AADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF 80
+ D AV D + +LVVDD R+L L Y T + AL++L K
Sbjct: 119 STDKAVSDN--DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHI 174
Query: 81 DVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139
D+VLSDV+MP+MDG++L + I L + LPVI ++A+ R + G L KP+
Sbjct: 175 DIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 234
Query: 140 EELK---NIWQHVVRK 152
+ +K ++ VRK
Sbjct: 235 DVIKQTLTLYAERVRK 250
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT L L + DV+LSD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEE 141
LL+ I LPVI+M+A + A + + GA DYL KP +E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT L L + DV+LSD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEE 141
LL+ I LPVI+M+A + A + + GA DYL KP +E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LV++DD +L L Y V A L ++ R+ D++L D+ +PD DG
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGL--IKAREDHPDLILLDLGLPDFDG 96
Query: 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154
+++ + LP+I+++A V +R + GA DYLIKP +EL + +R+R
Sbjct: 97 GDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156
Query: 155 NEN 157
+E+
Sbjct: 157 SES 159
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVDD T RI+ +L+ +N +A +D L + + G + V+S +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISXWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M+ A+ + ++ + GA +++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LV+DD+ T L+ ++ +L V T S + L I E DVV++D+ MP + G
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 95 FKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
+L I + + VI+++ G + + ++ GA +YL KP+ ++L
Sbjct: 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDL 113
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ +LVVDD R+L L Y T + AL++L K D+VLSDV+MP+MD
Sbjct: 9 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMD 66
Query: 94 GFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK---NIWQHV 149
G++L + I L + LPVI ++A+ R + G L KP+ + +K ++
Sbjct: 67 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 126
Query: 150 VRK 152
VRK
Sbjct: 127 VRK 129
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+RVLVV+D+ ++ + L++ ++ V C + + FDVV+ D+ +P D
Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHD 60
Query: 94 GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
G+++L+ + ++ PV+M++A V ++G+ GA DYL KP EL + ++R+
Sbjct: 61 GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120
Query: 153 R 153
+
Sbjct: 121 K 121
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVDDD + +LE+ L TT L L + DV+LS + MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSXIRMPGMDGL 63
Query: 96 KLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEE 141
LL+ I LPVI+M+A + A + + GA DYL KP +E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++LVVDD+ + + +L+ L R Y+V T S AL K D+++ DV +P +DG
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKP--DLIVLDVMLPKLDG 62
Query: 95 FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
++ + + + + P++M++A + G+ GA DY+ KP E+ + ++R+
Sbjct: 63 IEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 31 PAG-LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVH 88
P G +++LVVDD T RI++ L R Y +V A + L + V+++D +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWN 60
Query: 89 MPDMDGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
MP+M+G L++ + + ++P+IM++A+G + V+ ++ G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L++DDD L L + V L I + D+V+ D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 96 KLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
+L+ I + P+I++S G +S + +R GA DYLIKP+ E+L + +H VR+
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL--EDLA-VLEHSVRR 120
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L++DDD L L + V L I + D+V+ D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 96 KLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
+L+ I + P+I++S G S + +R GA DYLIKP+ E+L + +H VR+
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL--EDLA-VLEHSVRR 120
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 31 PAG-LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVH 88
P G +++LVVDD T RI++ L R Y +V A + L + V+++D +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWN 60
Query: 89 MPDMDGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
MP+M+G L++ + + ++P+IM++ +G + V+ ++ G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 34 LRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
+RVL VDD +I+ +++ + V T VA D+++ K DV+ DV MP
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK--KFNPDVLTLDVEMPR 61
Query: 92 MDGFKLLEHIGLEMDLPVIMMSA-DGRVSAV-MRGIRHGACDYLIKP---IRE 139
MDG LE + +PV+M+S+ G+ S V +R + GA D++ KP IRE
Sbjct: 62 MDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIRE 114
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVV + T + +L+ +N A +D L + + G + V+SD +MP+M
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFN--NVEDAEDGVDALNKLQAGGYGFVISDWNMPNM 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+M++A+ + ++ + GA Y++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDM 92
L+ LVVD T RI+ +L+ +N +A +D L + + G + V+SD + P+
Sbjct: 5 LKFLVVDKFSTXRRIVRNLLKELGFN--NVEEAEDGVDALNKLQAGGYGFVISDWNXPNX 62
Query: 93 DGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR----EEELKNI 145
DG +LL+ I G LPV+ ++A+ + ++ + GA +++KP EE+L I
Sbjct: 63 DGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 146 WQHV 149
++ +
Sbjct: 123 FEKL 126
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VL+V+D+ + L +LR+ + T + AL +R G D+VL D+ +P M G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEF-DRAGA-DIVLLDLMLPGMSGT 64
Query: 96 KLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154
+ + + +PVIM++A D + V+ G+ GA DY+ KP EL + V+R+
Sbjct: 65 DVCKQLRARSSVPVIMVTARDSEIDKVV-GLELGADDYVTKPYSARELIARIRAVLRRGG 123
Query: 155 NENKEHENSGSLE 167
+++ E + G LE
Sbjct: 124 DDDSEMSD-GVLE 135
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 49 LEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107
LE+ LR + V T A AL E + D ++ D++MP +DG ++ + ++ D+
Sbjct: 23 LERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDGVSVVTALRAMDNDV 80
Query: 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153
PV ++SA V + G+ GA DYL+KP EL + ++R+R
Sbjct: 81 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91
G RVL+VDD +L+ ++ + Y V + A++ +E K D+V D+ MP+
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPE 59
Query: 92 MDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138
M+G ++ I ++ + +I+ SA G+ + V+ I+ GA D+++KP +
Sbjct: 60 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91
G RVL+VDD +L+ ++ + Y V + A++ +E K D+V D+ MP+
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPE 58
Query: 92 MDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138
M+G ++ I ++ + +I+ SA G+ + V+ I+ GA D+++KP +
Sbjct: 59 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDMD 93
++L+VDD +L ++ + Y + ALDI+ +ER D+VL D+ +P MD
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 94 GFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144
G ++L+ + ++ ++ VI+M+A G + + GA + KP +E+++
Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDMD 93
++L+VDD +L ++ + Y + ALDI+ +ER D+VL D+ +P MD
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 63
Query: 94 GFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144
G ++L+ + ++ ++ VI+M+A G + + GA + KP +E+++
Sbjct: 64 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD+ I++ + + Y V T AL+ + D+++ D+ +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILDLMLPEIDG 60
Query: 95 FKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
++ + I +P++M+SA D V+ G+ GA DY+ KP EL+ + ++R+
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVI-GLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDMD 93
++L+VDD +L ++ + Y + ALDI+ +ER D+VL D+ +P MD
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 59
Query: 94 GFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144
G ++L+ + ++ ++ VI+M+A G + + GA + KP +E+++
Sbjct: 60 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 31 PAG-LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVH 88
P G +++LVVDD T RI++ L R Y +V A + L + V+++ +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITAWN 60
Query: 89 MPDMDGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
MP+M+G L++ + + ++P+IM++ +G + V+ ++ G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD +L ++ + Y + ALDI+ + + D+VL D+ +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 95 FKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144
++L+ + ++ ++ VI+M+A G + + GA + KP +E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD---- 91
+++VDD+ L ++ +L+ V T S +LRE +VVL D++
Sbjct: 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENP--EVVLLDMNFTSGINN 63
Query: 92 -MDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
+G L I + DLPV++ +A + +RGI+ GA D+++KP ++L
Sbjct: 64 GNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKL 116
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 15/124 (12%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQA----AVALDILRERKGCFDVVLSDVHMPD 91
V +VDD+ + L ML + V A A A D+ R G V+++D+ MPD
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV---RNG---VLVTDLRMPD 59
Query: 92 MDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE----EELKNIW 146
M G +LL ++G L++++P I+++ G V + ++ GA D++ KP + E ++
Sbjct: 60 MSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS 119
Query: 147 QHVV 150
+H+V
Sbjct: 120 EHLV 123
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF--DVVLSDVHM 89
G ++L+V+D+ +L+ + AL++L G F D+++ D+ M
Sbjct: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----GGFTPDLMICDIAM 61
Query: 90 PDMDGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139
P M+G KLLEHI D PV+++SA ++ + + +R G D L+KP+++
Sbjct: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDMD 93
++L+VDD +L ++ + Y + ALDI+ +ER D+VL D+ +P MD
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 94 GFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144
G ++L+ + ++ ++ VI+M+A G + GA + KP +E+++
Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+D+ ++ +L + + A++ L E D++L D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSG 61
Query: 95 FKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151
+ ++H+ E D+PV+M++A G +RG+ GA DY+ KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 152 K 152
+
Sbjct: 122 R 122
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VLV++DD +LE+ L V + + A +L E+ F+VVL + +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLXLLLPDVN 58
Query: 94 GFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV-- 150
G ++L+ I + VI+++ G + + ++ GA D+L KP EE++ +
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 151 RKRWNENKEHENSGSLEE 168
RK EN+ L+E
Sbjct: 119 RKLRKENELLRREKDLKE 136
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDMD 93
++L+VDD +L ++ + Y + ALDI+ +ER D+VL D+ +P MD
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 94 GFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144
G ++L+ + ++ ++ VI+M+A G + + GA KP +E+++
Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA----VALDILRERKGCFDVVLSDVH 88
+RVLVV+D+ ++ + L++ + V C AL+ FDVV+ D+
Sbjct: 2 NVRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALN------EPFDVVILDIX 55
Query: 89 MPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147
+P DG+++L+ ++ PV+ ++A V ++G+ GA DYL KP EL +
Sbjct: 56 LPVHDGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVR 115
Query: 148 HVVRKRWNENKEHENSGSL---EETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKE 204
++R++ G L T RGS EI+ + E + R+ KE
Sbjct: 116 ALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILE-YLVXNKNRVVTKE 174
Query: 205 E 205
E
Sbjct: 175 E 175
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+D+ ++ +L + + A++ L E D++L D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSG 61
Query: 95 FKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151
+ ++H+ E D+PV+M++A G +RG+ GA DY+ KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 152 K 152
+
Sbjct: 122 R 122
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ + L +L Y+ T A ++E F V++ DV MPD DG
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDG 60
Query: 95 FKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
++ I D VI+++ G V ++ I+ GA ++L KP E
Sbjct: 61 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERF 109
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDMD 93
++L+VDD +L ++ + Y + ALDI+ +ER D+VL D+ +P MD
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 94 GFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144
G ++ + + ++ ++ VI+M+A G + + GA + KP +E+++
Sbjct: 62 GIEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVL+V+D + + +Q ++ Y++ A+ + K +++ D+ +PDM G
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKP--QLIILDLKLPDMSG 63
Query: 95 FKLLEHIGLEMDLP--VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK-NIWQHVVR 151
+L+ I + D+P VI+ +A G V + I+ GA D+L KPI + LK ++ H+ R
Sbjct: 64 EDVLDWIN-QNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122
Query: 152 KR 153
+
Sbjct: 123 AK 124
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+VDD+ I++ + + Y V T AL+ + D+++ + +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILXLMLPEIDG 60
Query: 95 FKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
++ + I +P++M+SA D V+ G+ GA DY+ KP EL+ + ++R+
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVI-GLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
+R+LV DD +L+++L + + V + A LD + E +D V+ D+HMP M
Sbjct: 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGM 71
Query: 93 DGFKLLEHI------GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137
+G +L+ + G+ PV+++SAD A+ + GA +L KP+
Sbjct: 72 NGLDMLKQLRVMQASGMRYT-PVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVVDD+ + L +L Y+ T A ++E F V++ DV PD DG
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWXPDGDG 59
Query: 95 FKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148
++ I D VI+++ G V ++ I+ GA ++L KP E +H
Sbjct: 60 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKH 114
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDIL-RERKGCFDVVLSDVHMPDMD 93
++L+VDD +L ++ + Y + ALDI+ +ER D+VL + +P MD
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLXMKIPGMD 61
Query: 94 GFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144
G ++L+ + ++ ++ VI+M+A G + + GA + KP +E+++
Sbjct: 62 GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VLVVDD T LR+ L V S A AL L E+ +VL D + P++D
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATL-EQHPAIRLVLVDYYXPEID 183
Query: 94 GFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
G L+ + + L +I +S + R ++ GA D+L +P EEL+
Sbjct: 184 GISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQ 236
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQA----AVALDILRERKGCFDVVLSDVHMPD 91
V +VDD+ + L ML + V A A A D+ R G V+++ + MPD
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV---RNG---VLVTXLRMPD 59
Query: 92 MDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE----EELKNIW 146
M G +LL ++G L++++P I+++ G V + ++ GA D++ KP + E ++
Sbjct: 60 MSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS 119
Query: 147 QHVV 150
+H+V
Sbjct: 120 EHLV 123
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
Query: 34 LRVLVVDDDITCLRILEQML--RRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
++V + DD+ + +L++ + + + + T L +L E++ D++L D+ MP
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRP--DILLLDIIMPH 60
Query: 92 MDGFKLLEHI--GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149
+DG +LE I G E VIM++A G+ + + GA +++KP +++N+ H+
Sbjct: 61 LDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPF---DMENLAHHI 117
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 81 DVVLSDVHMPDMDGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137
D++L + +P G + ++H+ E D+PV+M++A G +RG+ GA DY+ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 138 REEELKNIWQHVVRK 152
+EL + V+R+
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+V+D+ +++ +L Y + AL I RE K D++L D+ +P++ G
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 60
Query: 95 FKLLEHIGLEMDL---PVIMMSADGRVSAVMRG----IRHGACD-YLIKPI 137
++ + + + DL PV+ ++A M+G IR G C+ Y+ KPI
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVTA-----FAMKGDEERIREGGCEAYISKPI 106
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 28 DQFPAGLRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDIL------RERKGC- 79
D+F G RVLVVDD+ ++ L++ + V C AL ++ RE +G
Sbjct: 56 DEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSV 115
Query: 80 ----FDVVLSDVHMPDMDGFKLLEHI-----GLEMDLPVIMMSADGRVSAVMR-GIRHGA 129
FD + D MP+MDG++ I + P+I +S S R I+ G
Sbjct: 116 DKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGM 175
Query: 130 CDYLIKPIREEELKNIWQHVVRKRWNE 156
+L K + +L N+ + + KR E
Sbjct: 176 DAFLDKSLN--QLANVIREIESKRHLE 200
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+VD L+ L+Q+L Y + A AL +L R+ D+V+S H+P MDG
Sbjct: 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGP 74
Query: 96 KLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGAC-DYLIKPIREEEL 142
LL I + I+++ D + + + I G YL KP ++EL
Sbjct: 75 TLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQEL 123
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+VDD +I+ L++ Y V +AL+ L E D+++ D+ MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLDIMMPVMDG 61
Query: 95 FKLLEHIGLEMD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151
F +L+ + + + +PVI+++A G + GA + KP + +H++
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121
Query: 152 K 152
+
Sbjct: 122 E 122
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 22 ADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKG 78
AD AVP RVL+ +D+ L +MLR Y + + Q AV L L +
Sbjct: 8 ADAAVPR------RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKP-- 59
Query: 79 CFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137
D+V+ DV MP DG I + P+++++A + V R GA YL+KP
Sbjct: 60 --DLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPF 116
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V +VDDD ++ +L +++ + +D+L+ KG VVL D+ P DG+
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK--KGFSGVVLLDIXXPGXDGW 67
Query: 96 KLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
+ I LE + ++ ++A A G++ DY+ KP E+L
Sbjct: 68 DTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDL 117
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+D T L+ +L Y A+ L + D+++SDV MP+MDG+
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP--DLIISDVLMPEMDGY 67
Query: 96 KLLEHIGLEMDL---PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR- 151
L + + DL PVI+++ V+R + GA D++ KP ++ L + HV R
Sbjct: 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLAS---HVKRL 124
Query: 152 ----KRWNENKEHEN 162
KR E E+
Sbjct: 125 LSGVKRTEERYSRES 139
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 9/120 (7%)
Query: 34 LRVLVVDDDITCLRILEQML--RRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
++V + DD+ + +L++ + + + + T L +L E++ D++L + MP
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRP--DILLLXIIMPH 60
Query: 92 MDGFKLLEHI--GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149
+DG +LE I G E VIM++A G+ + + GA +++KP +++N+ H+
Sbjct: 61 LDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPF---DMENLAHHI 117
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 23 DVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFD 81
D +P VL+VDD + ++ L Q+ +N+ T + A+ + D
Sbjct: 32 DTGIP------FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNID 85
Query: 82 VVLSDVHMPDMDGFKLLEHIGLEMD--LPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137
+V + MP MDG L +I +E D VIM+SA G+ V + GA +++KP+
Sbjct: 86 IVTLXITMPKMDGITCLSNI-MEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPL 142
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGC-FDVVLSDVHMPDMDG 94
V++VDD+ L L+++++R N+ T + LD L KG +V+SD+ MP+M G
Sbjct: 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSP---LDALEALKGTSVQLVISDMRMPEMGG 66
Query: 95 FKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACD-YLIKPIREEEL 142
LE + D+ +++S A + + G +L+KP +E++
Sbjct: 67 EVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDV 116
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
L VL+ +D+ C + + L +C ++T + AL + R+ FDV++ D+ MP MD
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMD 68
Query: 94 GFKLLEHI 101
G + + I
Sbjct: 69 GLEAVSEI 76
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
++VL+VDD +T +L L++ + +T + I+ + +V+SD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKM 64
Query: 93 DGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
DG LL+ + I+++A G + V + GA + L KP E++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLR-RCLYNVTTCSQAAVALDILRE--RKG-CFDVVLSDVHM 89
+++LVV+D+ ++++ML + N+ A D ++E KG ++++ DV M
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 62
Query: 90 PDMDGFKLLEHIGLEMDL----PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145
P +DG LL + DL P++ ++A S + + G +L KPI+ +LK I
Sbjct: 63 PKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 34 LRVLVVDDDITCLRILEQMLR-RCLYNVTTCSQAAVALDILRE--RKG-CFDVVLSDVHM 89
+++LVV+D+ ++++ML + N+ A D ++E KG ++++ DV M
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 61
Query: 90 PDMDGFKLLEHIGLEMDL----PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145
P +DG LL + DL P++ ++A S + + G +L KPI+ +LK I
Sbjct: 62 PKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
+VL+VDD +I+ L++ Y V +AL+ L E D+++ + MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLXIMMPVMDG 61
Query: 95 FKLLEHIGLEMD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151
F +L+ + + + +PVI+++A G + GA + KP + +H++
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121
Query: 152 K 152
+
Sbjct: 122 E 122
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+D+ ++ +L + + A++ L E D++L +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLAWMLPGGSG 61
Query: 95 FKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151
+ ++H+ + D+PV+M++A G +RG+ GA D + KP +EL + V+R
Sbjct: 62 IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 152 K 152
+
Sbjct: 122 R 122
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++ VVDDD L+ + + L++ L V T D L + + F VV+ DV +PD G
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQ-LGRVKTFLTGE---DFLNDEEA-FHVVVLDVXLPDYSG 58
Query: 95 FKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
+++ I + VI+++ +V++G GA DY+ KP E L
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEIL 107
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RV +VDDD +L+ ++ NV L + ++ D+++ D+ MPDMDG
Sbjct: 5 RVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQ---DIIILDLMMPDMDG 61
Query: 95 FKLLEHIGLEMDLPVIMMSADGRVSAVM 122
+++ H+ E P ++ G S V+
Sbjct: 62 IEVIRHLA-EHKSPASLILISGYDSGVL 88
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILR-ERKGCFDVVLSDVHMPDM 92
LR+L+VDD+ L + + QA ++ ++ K +V+L+DV MP M
Sbjct: 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRM 62
Query: 93 DGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151
DG +L+++I L D VI MS + I+ A Y+ KPI E+ + + ++
Sbjct: 63 DGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122
Query: 152 KRWNENKEHENSG 164
+ ++ G
Sbjct: 123 TVLQHQAQQDSEG 135
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVV+D+ ++ +L + + A++ L E D++L +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSG 61
Query: 95 FKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151
+ ++H+ E D+PV+M++A G +RG+ GA D + KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 152 K 152
+
Sbjct: 122 R 122
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++ VVDDD L+ + + L++ L V T D L + + F VV+ DV +PD G
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQ-LGRVKTFLTGE---DFLNDEE-AFHVVVLDVXLPDYSG 58
Query: 95 FKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
+++ I + VI+++ +V++G GA DY+ KP E L
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEIL 107
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+D++ L+ + Y+V + A IL E ++V+ D+++P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGL 63
Query: 96 KLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEEL 142
L + + ++ ++ ++ D V ++ G+ GA DY+ KP EL
Sbjct: 64 LLARELREQANVALMFLTGRDNEVDKIL-GLEIGADDYITKPFNPREL 110
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+LVVDD + + L R Y T L+ L D+VL D+ DG+
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP--DLVLLDIXXEPXDGW 63
Query: 96 KLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
+ LE I + D+PV+ ++A DY++KP +L +HV+ +
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123
Query: 153 R 153
R
Sbjct: 124 R 124
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
+L+V+D++ L+ + Y+V + A IL E ++V+ D+++P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEYD--INLVIXDINLPGKNGL 63
Query: 96 KLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEEL 142
L + + ++ + ++ D V ++ G+ GA DY+ KP EL
Sbjct: 64 LLARELREQANVALXFLTGRDNEVDKIL-GLEIGADDYITKPFNPREL 110
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
RVLVV+D+ L+ ++ + V A A L E D+ + D+ +PD DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP--DIAIVDLGLPDEDG 59
Query: 95 FKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
L+ ++ LP+++++A + + GA DY+ KP EE+ Q + R+
Sbjct: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRR 118
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
VL+V+D+ R L L V L RK D+++ D+ +PD DG
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKP--DLIILDLGLPDGDGI 61
Query: 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
+ + + +PVI++SA S + + GA DYL KP EL+
Sbjct: 62 EFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQ 109
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V+V D+ +T R L+ + Y V+ + A +I + + D++L D+++PD +G
Sbjct: 6 VIVEDEPVTQAR-LQSYFTQEGYTVSVTASGAGLREIXQNQS--VDLILLDINLPDENGL 62
Query: 96 KLLEHIGLEMDLPVIMMSADGRVSAVMR--GIRHGACDYLIKPIREEEL 142
L + + +I+++ GR + R G+ GA DY+ KP+ EL
Sbjct: 63 XLTRALRERSTVGIILVT--GRSDRIDRIVGLEXGADDYVTKPLELREL 109
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+VDDD L +Q+L Y V + A L + F++ L + +PD +G
Sbjct: 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDXEG 62
Query: 95 FKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
+LLE L I ++ + + + GA Y+ KP+ +L
Sbjct: 63 TELLEKAHKLRPGXKKIXVTGYASLENSVFSLNAGADAYIXKPVNPRDL 111
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 34 LRVLVVDDDITCLRILEQML--RRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD 91
+RVLVVDD +L+ ++ + + V A++ E K DV+ D+ MP+
Sbjct: 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKP--DVITMDIEMPN 83
Query: 92 MDGFKLLEHIGLEMDLPVIMMSA--DGRVSAVMRGIRHGACDYLIKP 136
++G + L+ I + VIM+S+ + + + +R+GA D++ KP
Sbjct: 84 LNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|2LPM|A Chain A, Chemical Shift And Structure Assignments For Sma0114
Length = 123
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92
LRVLVV+D+ ++E L + V T S+ ALDI RKG FD+ + DV++
Sbjct: 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDI--ARKGQFDIAIIDVNLDGE 66
Query: 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI--RHGACDYLIKPIREEELKNIWQHVV 150
+ + + + E ++P I + G +G+ R+ L KP + EL+ + +
Sbjct: 67 PSYPVADILA-ERNVPFIFATGYGS-----KGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120
Query: 151 RK 152
++
Sbjct: 121 KE 122
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDIL-------RERKGCFDVVLSD 86
++ ++DD+ R++E+ +RR N + + AL+ L R G +VL D
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLD 66
Query: 87 VHMPDMDG---FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
+++PD G KL++ PV++++ + R GA Y+ KP+ E
Sbjct: 67 LNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFA 126
Query: 144 N 144
N
Sbjct: 127 N 127
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93
+ VLV++DD +LE+ L V + + A +L E+ F+VVL D+ +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVN 58
Query: 94 GFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV-- 150
G ++L+ I + VI+++ G + + ++ GA D+L KP EE++ +
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 151 RKRWNENKEHENSGSLEETDH 171
RK EN+ L+E ++
Sbjct: 119 RKLRKENELLRREKDLKEEEY 139
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAA---VALDILRERKGCFDVVLSDVHMPDM 92
V++VDD +R+ + L + +QAA ALD L + D++L D+ MP M
Sbjct: 16 VMIVDD-AAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNV-DLILLDIEMPVM 73
Query: 93 DGFKLLEHIGLEMDLPVIMMSA 114
DG + L H L+ + M+S+
Sbjct: 74 DGMEFLRHAKLKTRAKICMLSS 95
>pdb|2QV0|A Chain A, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
pdb|2QV0|B Chain B, Crystal Structure Of The Response Regulatory Domain Of
Protein Mrke From Klebsiella Pneumoniae
Length = 143
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAV------ALDILR-ERKGCFDVVLSD 86
++V++V+D+ + L + + T SQ + LD+L+ + D + D
Sbjct: 10 MKVIIVEDEFLAQQELSWL-------INTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLD 62
Query: 87 VHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146
+++P +DG L ++I P I+ + AV A DY++KP +E + N+
Sbjct: 63 INIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAV-EAFELEAFDYILKPYQESRIINML 121
Query: 147 QHVVRKRWNENKEHE 161
Q + +N E
Sbjct: 122 QKLTTAWEQQNNAAE 136
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDDD + L +LR ++ AL +RE + ++ +P +G
Sbjct: 7 RILVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDL--XLPGXNG 64
Query: 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEE 141
+ + + +P++ ++A V+ G+ GA DY+ KP + +E
Sbjct: 65 IDVCRVLRADSGVPIVXLTAKTDTVDVVLGLESGADDYIXKPFKPKE 111
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95
V VVD+ ++ L + +NV A LR K D+V DV + +
Sbjct: 7 VXVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDVFEGE-ESL 63
Query: 96 KLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
L+ I E D V ++SA ++ ++ GA DY++KP R + L
Sbjct: 64 NLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYL 111
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+ +DD R+L L + ++ AA AL+ + R V D+++PD DG
Sbjct: 8 RILICEDDPDIARLLNLXLEKGGFDSDXVHSAAQALEQVARRPYAAXTV--DLNLPDQDG 65
Query: 95 FKLLEHIGLE---MDLPVIMMSADGR 117
L+ + + DL ++++SA+ R
Sbjct: 66 VSLIRALRRDSRTRDLAIVVVSANAR 91
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 36 VLVVDDDITCLRILEQMLRRCL-----YNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90
VL+VDD ++ + +RR L + CS A+ + + K V+L D+ MP
Sbjct: 21 VLLVDDQA----MIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPT--VILQDLVMP 74
Query: 91 DMDGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147
+DG LL D+P+I++S + GA DYL+K L + +
Sbjct: 75 GVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK------LPDAIE 128
Query: 148 HVVRKRWN 155
V R R++
Sbjct: 129 LVARIRYH 136
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 81 DVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134
D+V D+ MP+M+G ++ I ++ + +I+ SA G+ + V+ I+ GA D+++
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 81
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK 96
LV+DD+ L + L R Y V AL + K F+ + +H+ + G
Sbjct: 11 LVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLS 68
Query: 97 LLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
L+ + L+ D +++++ ++ ++ ++ GA +YL KP E +
Sbjct: 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESI 115
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L++D D + L+ L ++ A+ + K +D++ ++ + D DG
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDG 63
Query: 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152
+ L + I P++ + +++ + G DYLIKP+ E L + ++R+
Sbjct: 64 WTLCKKIRNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAA---VALDILRERKGCFDVVLSDVHMPDM 92
V++VDD +R+ + L + +QAA ALD L + D++L ++ MP M
Sbjct: 16 VMIVDD-AAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNV-DLILLNIEMPVM 73
Query: 93 DGFKLLEHIGLEMDLPVIMMSA 114
DG + L H L+ + M+++
Sbjct: 74 DGMEFLRHAKLKTRAKICMLAS 95
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD 91
R+LVVDDD +E++L+R + V A + L ++ D+ MP
Sbjct: 8 RILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPA-----IMTLDLSMPK 62
Query: 92 MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
+DG ++ + + P I++ + + + + + GA DYL KP + L
Sbjct: 63 LDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDAL 115
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 36 VLVVDDDITCLRILEQMLRR--CLYNVTTCSQAAVALDILRERKGCFD--------VVLS 85
+LVV+D +++L+R + + C ALD L + + V+L
Sbjct: 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILL 68
Query: 86 DVHMPDMDGFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
D+++P DG ++L+ I + +PV++M+ + + Y++KP+ + L
Sbjct: 69 DLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRL 128
Query: 143 KNIWQHVVRKRW 154
Q + K W
Sbjct: 129 TETVQTFI-KYW 139
>pdb|3KCN|A Chain A, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
pdb|3KCN|B Chain B, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
Length = 151
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+L+VDDD + L L++ L + VTTC AL ++ + F V+ D P +G
Sbjct: 6 RILLVDDDYSLLNTLKRNL-SFDFEVTTCESGPEALACIK-KSDPFSVIXVDXRXPGXEG 63
Query: 95 FKLLE 99
++++
Sbjct: 64 TEVIQ 68
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR--EEELKNIWQHVVRKRWNENKEHE 161
++DL + + V+AV + +RHGA D P+R E+LK + H+ + W KE E
Sbjct: 43 DIDLTFDLDAQKTVVTAVSQAVRHGASD---APLRLNGEDLKLVSVHINDEPWTAWKEEE 99
Query: 162 NSGSLEETDHHKRGSDEI--EYASSVNEGTEGTFKA 195
G+L ++ +R + +I E + + N EG +++
Sbjct: 100 --GALVISNLPERFTLKIINEISPAANTALEGLYQS 133
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR--EEELKNIWQHVVRKRWNENKEHE 161
++DL + + V+AV + +RHGA D P+R E+LK + H+ + W KE E
Sbjct: 43 DIDLTFDLDAQKTVVTAVSQAVRHGASD---APLRLNGEDLKLVSVHINDEPWTAWKEEE 99
Query: 162 NSGSLEETDHHKRGSDEI--EYASSVNEGTEGTFKA 195
G+L ++ +R + +I E + + N EG +++
Sbjct: 100 --GALVISNLPERFTLKIINEISPAANTALEGLYQS 133
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR--EEELKNIWQHVVRKRWNENKEHE 161
++DL + + V+AV + +RHGA D P+R E+LK + H+ + W KE E
Sbjct: 22 DIDLTFDLDAQKTVVTAVSQAVRHGASD---APLRLNGEDLKLVSVHINDEPWTAWKEEE 78
Query: 162 NSGSLEETDHHKRGSDEI--EYASSVNEGTEGTFKA 195
G+L ++ +R + +I E + + N EG +++
Sbjct: 79 --GALVISNLPERFTLKIINEISPAANTALEGLYQS 112
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRV 118
V A AL++++ DV L D MP MDG ++ + E+ V+++SA
Sbjct: 44 VGEADDGAAALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEP 101
Query: 119 SAVMRGIRHGACDYLIK-PIREEELKNIW 146
+ V + ++ GA +L+K R E +K +
Sbjct: 102 AIVYQALQQGAAGFLLKDSTRTEIVKAVL 130
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 81 DVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134
D+V D+ MP+M+G ++ I ++ + +I+ SA G+ + V+ I+ GA +++
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIV 81
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 82 VVLSDVHMPDMDGFKLLEHI---GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-PI 137
V+L D+ MP +DG L+ L D+P+I++S GA DYL+K P
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVKLPD 123
Query: 138 REEELKNIWQH 148
E + I H
Sbjct: 124 NIELVARIRYH 134
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
R+LVVDD+ +L++ L+ Y + T AL + G +D+V+ D+ MP + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEMPGISG 60
Query: 95 FKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 143
++ I + D +I+++A + + A +Y++K +ELK
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYRSDLSS--WAADEYVVKSFNFDELK 108
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEEL 142
KL GL+ ++P+I++ + A++ G+ GA DYL KP +L
Sbjct: 66 LKLKRSKGLK-NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 31/146 (21%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG 94
++L+V+D+ + + + M+++ + + + A+ + +D+VL DV MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSSS--YDLVLMDVCMPVLDG 67
Query: 95 FKLLEHI---------------GLEMD--------------LPVIMMSADGRVSAVMRGI 125
K I G+++ LP+I M+A+ +
Sbjct: 68 LKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECY 127
Query: 126 RHGACDYLIKPIREEELKNIWQHVVR 151
+G ++ KP+ ++L+ Q +
Sbjct: 128 ANGMDSFISKPVTLQKLRECLQQYLH 153
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 21/111 (18%)
Query: 278 LNGVSQQGGITNSFCA-PIETN----VKLGSLGRFDIQ-ALAASGQIPPQTLAALHAELL 331
N V+ G T SF P T+ V++ G+ + +LA+SGQ TLA + A++L
Sbjct: 463 FNEVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVL 522
Query: 332 GRPTGNLVTAVDQPALLQATLQGPKCIPADHGFGVWASNSLGAVASTSNLG 382
G P ++V +QA +GFG +AS GAV ++G
Sbjct: 523 GVPASDVV--------IQA-----GSTKNTYGFGAYASR--GAVIGAGSIG 558
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCF-DVVLSDVHMPD-M 92
++L+V+D + + +L + Y V A++ + G + D++L D+ + + M
Sbjct: 7 KILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVE--KVSGGWYPDLILMDIELGEGM 64
Query: 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVR 151
DG + I +LPV+ ++A AV+ IR A Y++K E+ L I + +
Sbjct: 65 DGVQTALAIQQISELPVVFLTAHTE-PAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL- 122
Query: 152 KRWNENKEHENSG 164
R E H N G
Sbjct: 123 -RLYEANVHANEG 134
>pdb|3CG0|A Chain A, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|B Chain B, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|C Chain C, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|D Chain D, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
Length = 140
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 81 DVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139
D+ L D+ + +DG + + +LP+I +++ V R R YL KP+
Sbjct: 56 DIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAA 115
Query: 140 EEL-KNIWQHVVRKRWNE 156
+ L ++I + +K+ E
Sbjct: 116 DTLHRSIEMAIHKKKLEE 133
>pdb|1GXH|A Chain A, Colicin E8 Dnase Immunity Protein: Im8
Length = 85
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 139 EEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT 189
E E K I + ++ +E K+ +N H GSD I Y N+G+
Sbjct: 12 ETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGS 62
>pdb|1GXG|A Chain A, Non-Cognate Protein-Protein Interactions: The Nmr
Structure Of The Colicin E8 Inhibitor Protein Im8 And
Its Interaction With The Dnase Domain Of Colicin E9
Length = 85
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 139 EEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT 189
E E K I + ++ +E K+ +N H GSD I Y N+G+
Sbjct: 12 ETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLIYYPEGNNDGS 62
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--- 91
R+++VD + L L + +++ C A A+ + K +++++ +MP
Sbjct: 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPV--AVKTHPHLIITEANMPKISG 67
Query: 92 MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137
MD F L+ +PVI +S + + G D++ KP+
Sbjct: 68 MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,775,693
Number of Sequences: 62578
Number of extensions: 606298
Number of successful extensions: 1661
Number of sequences better than 100.0: 166
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 176
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)