Query 007601
Match_columns 596
No_of_seqs 408 out of 2408
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 12:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3437 Response regulator con 100.0 1.4E-35 3.1E-40 308.3 12.4 264 31-367 12-287 (360)
2 COG0745 OmpR Response regulato 99.8 3.2E-20 6.9E-25 186.9 16.2 119 34-155 1-121 (229)
3 COG4753 Response regulator con 99.8 1.7E-20 3.8E-25 204.0 13.6 119 33-153 1-123 (475)
4 COG4566 TtrR Response regulato 99.8 8.7E-21 1.9E-25 183.0 10.0 169 32-203 3-172 (202)
5 COG4565 CitB Response regulato 99.8 3.5E-19 7.5E-24 174.9 19.1 119 34-154 1-122 (224)
6 COG2197 CitB Response regulato 99.8 9.9E-20 2.1E-24 181.0 14.6 170 34-205 1-180 (211)
7 COG2204 AtoC Response regulato 99.8 2.4E-18 5.2E-23 187.6 16.8 120 33-154 4-124 (464)
8 PF00072 Response_reg: Respons 99.8 3.2E-17 7E-22 142.8 15.5 110 36-147 1-112 (112)
9 PRK15347 two component system 99.7 2.6E-16 5.6E-21 184.5 23.2 117 33-151 690-811 (921)
10 PRK10840 transcriptional regul 99.7 1.4E-16 3.1E-21 156.4 14.9 171 33-205 3-182 (216)
11 PRK10046 dpiA two-component re 99.7 7E-16 1.5E-20 153.1 17.5 122 30-153 1-125 (225)
12 COG0784 CheY FOG: CheY-like re 99.7 1.9E-15 4.2E-20 134.7 16.9 119 32-151 4-125 (130)
13 PRK09483 response regulator; P 99.7 1.2E-15 2.6E-20 147.3 15.7 170 33-204 1-179 (217)
14 PRK11466 hybrid sensory histid 99.7 1.1E-15 2.4E-20 179.5 18.0 151 1-152 630-800 (914)
15 PLN03029 type-a response regul 99.6 3.2E-15 7E-20 149.4 16.7 122 32-153 7-149 (222)
16 PRK10360 DNA-binding transcrip 99.6 1.8E-15 3.8E-20 143.8 14.0 158 34-197 2-161 (196)
17 PRK10529 DNA-binding transcrip 99.6 5.4E-15 1.2E-19 143.8 17.3 118 34-153 2-119 (225)
18 PRK11091 aerobic respiration c 99.6 2.7E-15 5.9E-20 173.9 17.5 149 1-152 473-645 (779)
19 COG3947 Response regulator con 99.6 7.4E-16 1.6E-20 157.2 10.1 115 34-152 1-116 (361)
20 PRK10643 DNA-binding transcrip 99.6 1.6E-14 3.4E-19 139.1 18.9 118 34-153 1-119 (222)
21 PRK10841 hybrid sensory kinase 99.6 5.9E-15 1.3E-19 175.0 19.2 120 32-153 800-920 (924)
22 COG3706 PleD Response regulato 99.6 5.1E-15 1.1E-19 160.6 17.1 122 32-155 131-255 (435)
23 PRK11173 two-component respons 99.6 8.3E-15 1.8E-19 144.5 17.2 118 34-153 4-121 (237)
24 PRK09958 DNA-binding transcrip 99.6 5.9E-15 1.3E-19 141.1 15.6 157 34-192 1-162 (204)
25 TIGR02956 TMAO_torS TMAO reduc 99.6 4E-15 8.8E-20 175.5 17.6 150 1-152 651-823 (968)
26 PRK10336 DNA-binding transcrip 99.6 1.3E-14 2.9E-19 139.7 18.0 118 34-153 1-119 (219)
27 PRK10816 DNA-binding transcrip 99.6 1.3E-14 2.9E-19 141.1 17.1 118 34-153 1-119 (223)
28 PRK09959 hybrid sensory histid 99.6 7.2E-15 1.6E-19 177.7 18.1 149 1-151 904-1075(1197)
29 PRK10766 DNA-binding transcrip 99.6 1.7E-14 3.6E-19 139.9 17.1 118 34-153 3-120 (221)
30 PRK11517 transcriptional regul 99.6 2.7E-14 6E-19 138.1 18.4 118 34-153 1-118 (223)
31 PRK10955 DNA-binding transcrip 99.6 3.2E-14 6.9E-19 138.5 18.8 117 34-153 2-118 (232)
32 PRK11475 DNA-binding transcrip 99.6 3.6E-15 7.8E-20 148.2 12.3 156 46-205 3-166 (207)
33 PRK09836 DNA-binding transcrip 99.6 2.5E-14 5.5E-19 139.5 17.2 117 34-152 1-118 (227)
34 PRK10701 DNA-binding transcrip 99.6 3.2E-14 7E-19 140.4 17.2 118 34-153 2-119 (240)
35 PRK10430 DNA-binding transcrip 99.6 3.3E-14 7.1E-19 142.3 17.2 120 33-152 1-123 (239)
36 TIGR02154 PhoB phosphate regul 99.6 3.9E-14 8.6E-19 136.5 17.0 119 33-153 2-123 (226)
37 PRK10161 transcriptional regul 99.6 4.9E-14 1.1E-18 137.6 17.2 117 34-152 3-122 (229)
38 CHL00148 orf27 Ycf27; Reviewed 99.6 5.2E-14 1.1E-18 137.7 17.4 120 32-153 5-124 (240)
39 PRK13856 two-component respons 99.6 5.3E-14 1.2E-18 139.6 17.0 117 35-153 3-120 (241)
40 KOG0519 Sensory transduction h 99.6 1.4E-14 3E-19 168.8 14.1 120 30-150 663-784 (786)
41 PRK09468 ompR osmolarity respo 99.6 7.3E-14 1.6E-18 137.5 17.1 119 33-153 5-124 (239)
42 PRK11083 DNA-binding response 99.6 7.2E-14 1.6E-18 135.1 16.6 119 33-153 3-122 (228)
43 PRK09935 transcriptional regul 99.6 1.2E-13 2.7E-18 131.8 17.7 163 33-197 3-173 (210)
44 TIGR01387 cztR_silR_copR heavy 99.6 1.8E-13 3.9E-18 131.4 18.7 117 36-154 1-118 (218)
45 COG4567 Response regulator con 99.6 2.7E-14 6E-19 133.6 12.4 112 35-148 11-123 (182)
46 TIGR03787 marine_sort_RR prote 99.6 1.1E-13 2.4E-18 134.7 17.3 117 35-153 2-121 (227)
47 PRK10100 DNA-binding transcrip 99.6 1.4E-14 3E-19 144.9 11.0 168 32-205 9-187 (216)
48 PRK11697 putative two-componen 99.6 9.6E-14 2.1E-18 137.3 16.0 116 33-152 1-118 (238)
49 PRK11107 hybrid sensory histid 99.5 7.7E-14 1.7E-18 163.5 16.9 119 32-152 666-787 (919)
50 PRK15411 rcsA colanic acid cap 99.5 1.1E-13 2.3E-18 137.2 15.0 162 34-205 1-169 (207)
51 PRK14084 two-component respons 99.5 1.9E-13 4.1E-18 136.3 16.3 116 34-153 1-119 (246)
52 PRK09581 pleD response regulat 99.5 5.5E-14 1.2E-18 150.4 12.8 119 31-152 153-274 (457)
53 PRK15479 transcriptional regul 99.5 9E-13 1.9E-17 126.8 19.0 119 34-154 1-120 (221)
54 PRK15369 two component system 99.5 4.1E-13 8.8E-18 126.6 15.7 166 33-200 3-176 (211)
55 TIGR02875 spore_0_A sporulatio 99.5 3.8E-13 8.3E-18 135.9 16.6 118 33-152 2-124 (262)
56 PRK10365 transcriptional regul 99.5 2.4E-13 5.2E-18 147.5 15.4 119 32-152 4-123 (441)
57 PRK10651 transcriptional regul 99.5 5.9E-13 1.3E-17 127.1 16.3 168 32-201 5-183 (216)
58 PRK09390 fixJ response regulat 99.5 1.5E-13 3.3E-18 129.0 10.8 120 32-153 2-122 (202)
59 PRK11361 acetoacetate metaboli 99.5 5.3E-13 1.1E-17 145.6 16.6 119 31-151 2-121 (457)
60 PRK10403 transcriptional regul 99.5 9.6E-13 2.1E-17 125.3 15.7 160 33-194 6-174 (215)
61 PRK10710 DNA-binding transcrip 99.5 1.5E-12 3.2E-17 127.4 17.4 118 34-153 11-128 (240)
62 PRK10923 glnG nitrogen regulat 99.5 9E-13 1.9E-17 144.7 17.0 117 34-152 4-121 (469)
63 PRK15115 response regulator Gl 99.5 7.9E-13 1.7E-17 144.0 16.3 118 33-152 5-123 (444)
64 PRK13837 two-component VirA-li 99.4 1.7E-12 3.8E-17 152.3 18.6 150 1-153 643-815 (828)
65 TIGR02915 PEP_resp_reg putativ 99.4 1.2E-12 2.5E-17 142.8 15.8 113 36-152 1-119 (445)
66 PRK12555 chemotaxis-specific m 99.4 1.6E-12 3.4E-17 137.3 15.8 102 34-137 1-106 (337)
67 TIGR01818 ntrC nitrogen regula 99.4 2.6E-12 5.7E-17 140.6 15.8 115 36-152 1-116 (463)
68 PLN03162 golden-2 like transcr 99.4 5.8E-13 1.3E-17 138.4 9.7 63 217-279 232-294 (526)
69 PRK13435 response regulator; P 99.4 6.8E-12 1.5E-16 115.0 15.4 118 32-154 4-123 (145)
70 PRK10610 chemotaxis regulatory 99.4 2.2E-11 4.7E-16 104.2 16.8 118 33-152 5-126 (129)
71 PRK09581 pleD response regulat 99.4 1E-11 2.2E-16 133.0 17.5 118 34-153 3-123 (457)
72 PRK00742 chemotaxis-specific m 99.4 1.1E-11 2.3E-16 131.8 16.3 104 33-138 3-110 (354)
73 PRK13557 histidine kinase; Pro 99.4 1.7E-11 3.7E-16 134.1 17.4 150 1-151 362-534 (540)
74 PRK13558 bacterio-opsin activa 99.4 7.4E-12 1.6E-16 142.8 14.9 118 33-152 7-127 (665)
75 COG2201 CheB Chemotaxis respon 99.3 6.7E-12 1.5E-16 132.9 12.9 103 33-137 1-107 (350)
76 PRK09191 two-component respons 99.3 1.3E-10 2.8E-15 116.5 15.7 116 33-152 137-254 (261)
77 COG3707 AmiR Response regulato 99.2 1.7E-10 3.6E-15 112.5 12.1 120 32-153 4-124 (194)
78 cd00156 REC Signal receiver do 99.2 6.1E-10 1.3E-14 90.5 12.8 111 37-149 1-112 (113)
79 PRK10693 response regulator of 99.1 7.4E-10 1.6E-14 115.9 12.4 90 62-153 2-93 (303)
80 COG3279 LytT Response regulato 99.1 5E-10 1.1E-14 114.1 10.2 115 33-151 1-118 (244)
81 TIGR01557 myb_SHAQKYF myb-like 99.0 3.9E-10 8.4E-15 90.2 6.4 54 220-273 1-55 (57)
82 PRK15029 arginine decarboxylas 99.0 2.2E-09 4.8E-14 124.4 13.6 119 34-154 1-135 (755)
83 COG2206 c-di-GMP phosphodieste 99.0 2.3E-10 5.1E-15 122.0 3.4 74 257-333 142-218 (344)
84 PRK11107 hybrid sensory histid 98.8 9.5E-08 2.1E-12 112.4 15.4 144 1-150 486-650 (919)
85 COG3706 PleD Response regulato 98.1 2.9E-06 6.2E-11 93.0 5.0 94 57-153 12-105 (435)
86 PRK10618 phosphotransfer inter 97.7 5.4E-05 1.2E-09 90.4 6.4 81 1-89 640-737 (894)
87 smart00448 REC cheY-homologous 97.3 0.0015 3.4E-08 45.6 8.1 55 34-90 1-55 (55)
88 PRK12704 phosphodiesterase; Pr 97.3 0.00041 8.8E-09 78.4 7.6 44 108-151 251-296 (520)
89 PF06490 FleQ: Flagellar regul 97.3 0.0024 5.1E-08 57.6 10.1 105 35-149 1-107 (109)
90 PF03709 OKR_DC_1_N: Orn/Lys/A 96.5 0.022 4.9E-07 51.6 10.1 106 46-153 6-115 (115)
91 cd02071 MM_CoA_mut_B12_BD meth 95.3 0.52 1.1E-05 43.0 13.4 110 35-146 1-120 (122)
92 PRK02261 methylaspartate mutas 94.8 0.91 2E-05 42.6 13.7 115 33-150 3-134 (137)
93 cd02067 B12-binding B12 bindin 94.5 0.42 9.2E-06 42.9 10.5 94 40-135 10-109 (119)
94 TIGR00640 acid_CoA_mut_C methy 94.0 2.2 4.8E-05 39.8 14.5 116 34-151 3-128 (132)
95 PRK15399 lysine decarboxylase 93.9 0.6 1.3E-05 55.0 12.6 118 34-155 1-126 (713)
96 PRK15400 lysine decarboxylase 93.3 0.71 1.5E-05 54.3 11.9 117 34-154 1-125 (714)
97 PRK07152 nadD putative nicotin 91.3 0.08 1.7E-06 56.8 0.9 76 246-328 170-259 (342)
98 TIGR00295 conserved hypothetic 90.8 0.18 3.9E-06 48.6 2.9 45 262-309 12-58 (164)
99 cd04728 ThiG Thiazole synthase 90.8 3.8 8.3E-05 42.3 12.4 111 33-152 93-226 (248)
100 TIGR00277 HDIG uncharacterized 89.8 0.19 4.1E-06 40.9 1.8 41 263-309 4-44 (80)
101 PRK12703 tRNA 2'-O-methylase; 89.6 4.8 0.0001 43.6 12.6 62 35-103 32-95 (339)
102 PRK00208 thiG thiazole synthas 89.5 5.2 0.00011 41.5 12.2 112 32-152 92-226 (250)
103 PF01966 HD: HD domain; Inter 89.2 0.12 2.5E-06 45.0 0.1 41 265-309 2-42 (122)
104 PF02310 B12-binding: B12 bind 88.8 7.2 0.00016 34.6 11.4 91 41-134 12-110 (121)
105 TIGR03815 CpaE_hom_Actino heli 88.4 1.4 3.1E-05 46.6 7.6 84 58-150 2-86 (322)
106 TIGR01501 MthylAspMutase methy 87.2 16 0.00035 34.4 13.0 110 40-151 12-133 (134)
107 PF10087 DUF2325: Uncharacteri 86.8 5.2 0.00011 34.9 9.0 90 35-125 1-93 (97)
108 PRK01130 N-acetylmannosamine-6 86.6 13 0.00027 37.2 12.8 84 50-136 111-203 (221)
109 PRK00043 thiE thiamine-phospha 83.5 18 0.0004 35.3 12.2 69 62-134 110-187 (212)
110 PRK15320 transcriptional activ 82.8 3.9 8.4E-05 41.2 6.9 167 35-205 3-196 (251)
111 TIGR03319 YmdA_YtgF conserved 81.9 1.3 2.9E-05 50.4 3.8 67 234-307 298-367 (514)
112 cd02070 corrinoid_protein_B12- 80.9 19 0.00041 35.7 11.2 98 33-135 82-191 (201)
113 CHL00162 thiG thiamin biosynth 80.2 34 0.00073 35.8 12.8 116 32-152 106-240 (267)
114 cd04729 NanE N-acetylmannosami 79.8 25 0.00054 35.1 11.8 72 61-135 128-206 (219)
115 COG4999 Uncharacterized domain 78.9 11 0.00023 35.2 7.9 108 30-145 8-120 (140)
116 COG1418 Predicted HD superfami 78.7 1.6 3.4E-05 44.4 2.8 43 260-308 33-75 (222)
117 PRK10558 alpha-dehydro-beta-de 78.6 22 0.00047 36.9 11.2 100 48-149 9-113 (256)
118 TIGR03239 GarL 2-dehydro-3-deo 77.2 29 0.00064 35.8 11.6 99 49-149 3-106 (249)
119 COG2185 Sbm Methylmalonyl-CoA 76.9 69 0.0015 30.7 13.0 117 32-150 11-137 (143)
120 PRK03958 tRNA 2'-O-methylase; 75.1 29 0.00063 34.3 10.2 94 34-135 32-128 (176)
121 cd02072 Glm_B12_BD B12 binding 75.1 55 0.0012 30.6 11.7 105 40-147 10-127 (128)
122 cd02069 methionine_synthase_B1 74.8 35 0.00075 34.4 11.2 102 32-135 87-201 (213)
123 TIGR03401 cyanamide_fam HD dom 74.6 2.4 5.1E-05 43.4 2.8 58 263-328 55-116 (228)
124 PRK12705 hypothetical protein; 74.6 2.9 6.3E-05 47.5 3.7 65 236-307 294-361 (508)
125 PRK10128 2-keto-3-deoxy-L-rham 74.5 37 0.0008 35.6 11.6 100 48-149 8-112 (267)
126 PF01408 GFO_IDH_MocA: Oxidore 74.2 60 0.0013 28.4 12.6 37 116-152 74-112 (120)
127 cd04724 Tryptophan_synthase_al 73.4 33 0.00071 35.1 10.8 58 93-150 63-126 (242)
128 PRK09426 methylmalonyl-CoA mut 72.7 42 0.00091 40.0 12.7 117 33-151 582-708 (714)
129 TIGR02311 HpaI 2,4-dihydroxyhe 70.2 59 0.0013 33.5 11.8 99 49-149 3-106 (249)
130 PRK00106 hypothetical protein; 70.2 6 0.00013 45.3 4.9 67 234-307 319-388 (535)
131 PRK07896 nicotinate-nucleotide 69.4 42 0.00091 35.6 10.7 70 59-132 202-271 (289)
132 cd02068 radical_SAM_B12_BD B12 68.7 57 0.0012 29.4 10.3 105 44-150 3-111 (127)
133 TIGR01334 modD putative molybd 68.7 36 0.00078 35.9 10.0 93 36-132 159-260 (277)
134 TIGR01596 cas3_HD CRISPR-assoc 67.4 2.2 4.7E-05 40.5 0.6 42 266-309 3-48 (177)
135 PRK08385 nicotinate-nucleotide 67.0 96 0.0021 32.8 12.7 93 36-133 157-257 (278)
136 TIGR00007 phosphoribosylformim 66.5 75 0.0016 31.7 11.5 68 65-134 146-217 (230)
137 PRK12724 flagellar biosynthesi 66.5 25 0.00054 39.4 8.6 100 31-132 250-364 (432)
138 cd00077 HDc Metal dependent ph 65.6 2.7 5.9E-05 36.4 0.8 43 264-309 3-45 (145)
139 PF03602 Cons_hypoth95: Conser 65.4 25 0.00055 34.5 7.6 69 34-102 66-138 (183)
140 cd04730 NPD_like 2-Nitropropan 65.1 96 0.0021 30.8 12.0 71 62-135 108-185 (236)
141 TIGR00488 putative HD superfam 65.1 2.8 6.1E-05 39.9 0.9 40 262-307 7-46 (158)
142 PF07688 KaiA: KaiA domain; I 65.0 25 0.00055 36.7 7.7 113 35-153 2-120 (283)
143 cd00564 TMP_TenI Thiamine mono 64.7 55 0.0012 31.0 9.8 70 62-135 101-178 (196)
144 TIGR00308 TRM1 tRNA(guanine-26 64.7 1.1E+02 0.0025 33.5 13.3 113 34-152 70-190 (374)
145 PRK11840 bifunctional sulfur c 64.1 84 0.0018 34.0 11.7 115 33-152 167-300 (326)
146 TIGR02370 pyl_corrinoid methyl 64.1 45 0.00098 33.0 9.2 96 34-134 85-192 (197)
147 cd04727 pdxS PdxS is a subunit 63.7 44 0.00094 35.4 9.3 89 62-153 118-248 (283)
148 PF01596 Methyltransf_3: O-met 63.6 36 0.00079 34.1 8.5 60 29-88 66-130 (205)
149 PRK13111 trpA tryptophan synth 63.5 21 0.00046 37.1 7.0 57 93-149 75-138 (258)
150 PLN02591 tryptophan synthase 63.1 25 0.00054 36.5 7.4 58 93-150 65-128 (250)
151 TIGR00343 pyridoxal 5'-phospha 62.9 43 0.00093 35.5 9.1 61 93-153 184-251 (287)
152 PF02254 TrkA_N: TrkA-N domain 61.1 73 0.0016 27.8 9.2 91 34-133 22-114 (116)
153 COG0512 PabA Anthranilate/para 60.9 13 0.00028 37.1 4.7 76 33-112 1-80 (191)
154 PRK05848 nicotinate-nucleotide 60.8 56 0.0012 34.4 9.6 90 36-134 155-256 (273)
155 PRK05703 flhF flagellar biosyn 60.5 66 0.0014 35.9 10.7 93 32-125 250-351 (424)
156 PRK00278 trpC indole-3-glycero 58.3 2E+02 0.0043 29.8 13.1 95 37-135 139-240 (260)
157 TIGR00262 trpA tryptophan synt 58.1 32 0.00068 35.7 7.2 57 93-149 73-136 (256)
158 CHL00200 trpA tryptophan synth 56.5 36 0.00078 35.5 7.3 57 93-149 78-140 (263)
159 cd02065 B12-binding_like B12 b 56.2 66 0.0014 28.4 8.2 71 40-112 10-86 (125)
160 smart00471 HDc Metal dependent 55.9 6.3 0.00014 33.5 1.4 43 262-309 3-45 (124)
161 TIGR03151 enACPred_II putative 54.6 1.2E+02 0.0026 32.2 11.1 82 52-136 104-191 (307)
162 TIGR00693 thiE thiamine-phosph 54.6 1.1E+02 0.0023 29.7 10.0 70 61-134 101-179 (196)
163 PF14097 SpoVAE: Stage V sporu 54.3 1.2E+02 0.0027 29.9 9.9 75 36-110 3-86 (180)
164 PF09936 Methyltrn_RNA_4: SAM- 52.9 1.2E+02 0.0027 30.2 9.8 101 35-138 44-161 (185)
165 PRK00748 1-(5-phosphoribosyl)- 52.5 74 0.0016 31.7 8.7 67 66-134 148-219 (233)
166 PRK06096 molybdenum transport 52.1 85 0.0019 33.3 9.3 71 59-133 192-262 (284)
167 TIGR02026 BchE magnesium-proto 51.8 1.6E+02 0.0035 33.3 12.1 107 42-151 21-137 (497)
168 PF05690 ThiG: Thiazole biosyn 51.8 2.1E+02 0.0045 29.8 11.6 117 32-152 92-226 (247)
169 PRK13587 1-(5-phosphoribosyl)- 51.4 92 0.002 31.8 9.2 68 67-135 151-221 (234)
170 cd00331 IGPS Indole-3-glycerol 51.0 2.6E+02 0.0056 27.7 12.8 78 55-135 119-201 (217)
171 PLN02871 UDP-sulfoquinovose:DA 50.8 1.8E+02 0.0039 32.1 12.2 107 33-151 290-399 (465)
172 PRK07428 nicotinate-nucleotide 49.9 1.3E+02 0.0027 32.0 10.2 94 35-133 168-269 (288)
173 cd03823 GT1_ExpE7_like This fa 49.1 1.9E+02 0.0041 29.0 11.2 66 80-151 263-328 (359)
174 PRK05458 guanosine 5'-monophos 49.0 2.6E+02 0.0057 30.2 12.6 98 35-135 113-230 (326)
175 PRK05718 keto-hydroxyglutarate 49.0 1.8E+02 0.004 29.3 10.8 89 51-144 10-102 (212)
176 PRK12726 flagellar biosynthesi 47.8 96 0.0021 34.6 9.1 57 32-88 233-294 (407)
177 cd04723 HisA_HisF Phosphoribos 47.7 1.1E+02 0.0023 31.1 9.0 68 65-134 147-217 (233)
178 TIGR01037 pyrD_sub1_fam dihydr 47.7 2.6E+02 0.0056 29.2 12.2 58 95-152 223-286 (300)
179 TIGR01163 rpe ribulose-phospha 47.4 82 0.0018 30.6 7.9 68 65-136 115-194 (210)
180 TIGR00735 hisF imidazoleglycer 47.1 2.2E+02 0.0047 29.2 11.3 78 67-147 158-247 (254)
181 PRK11889 flhF flagellar biosyn 47.1 88 0.0019 35.1 8.7 57 31-87 267-328 (436)
182 PRK04180 pyridoxal biosynthesi 47.0 48 0.001 35.3 6.4 62 93-154 190-258 (293)
183 cd04722 TIM_phosphate_binding 46.6 1.4E+02 0.0031 27.6 9.2 56 79-134 136-198 (200)
184 TIGR00262 trpA tryptophan synt 46.2 3.1E+02 0.0068 28.4 12.3 103 33-136 115-228 (256)
185 PRK10742 putative methyltransf 45.9 2.1E+02 0.0045 29.9 10.8 57 33-92 110-177 (250)
186 cd01424 MGS_CPS_II Methylglyox 45.7 1.7E+02 0.0037 25.8 9.0 24 39-62 8-31 (110)
187 PRK10669 putative cation:proto 45.4 74 0.0016 36.4 8.3 92 33-133 440-533 (558)
188 PF00534 Glycos_transf_1: Glyc 45.4 1.9E+02 0.0041 26.5 9.7 110 32-153 46-159 (172)
189 TIGR03088 stp2 sugar transfera 45.3 1.6E+02 0.0034 30.9 10.3 65 80-151 273-337 (374)
190 PRK05749 3-deoxy-D-manno-octul 45.3 2.1E+02 0.0046 31.0 11.5 54 94-151 334-387 (425)
191 PRK14098 glycogen synthase; Pr 45.2 2.6E+02 0.0057 31.5 12.5 112 33-151 336-450 (489)
192 cd04726 KGPDC_HPS 3-Keto-L-gul 45.0 2.9E+02 0.0064 26.6 12.3 99 33-135 77-186 (202)
193 PTZ00314 inosine-5'-monophosph 44.5 2E+02 0.0042 32.9 11.3 102 32-136 252-374 (495)
194 cd03313 enolase Enolase: Enola 44.4 1.7E+02 0.0038 32.3 10.7 103 40-145 210-345 (408)
195 TIGR01761 thiaz-red thiazoliny 44.3 2.4E+02 0.0052 30.7 11.5 105 32-151 2-113 (343)
196 PRK10119 putative hydrolase; P 44.3 11 0.00024 38.6 1.3 36 265-306 27-62 (231)
197 PRK15484 lipopolysaccharide 1, 44.2 4.3E+02 0.0094 28.3 14.0 76 66-151 267-343 (380)
198 PRK09016 quinolinate phosphori 44.0 2.2E+02 0.0047 30.5 10.8 90 36-132 182-277 (296)
199 PLN02274 inosine-5'-monophosph 43.9 1.8E+02 0.0039 33.4 10.9 101 32-135 259-380 (505)
200 PRK14974 cell division protein 43.8 2.7E+02 0.0059 30.1 11.8 99 32-134 167-286 (336)
201 cd03813 GT1_like_3 This family 43.8 2E+02 0.0043 32.1 11.2 65 80-151 371-441 (475)
202 PRK05581 ribulose-phosphate 3- 43.7 1.3E+02 0.0029 29.5 8.8 57 80-136 132-199 (220)
203 cd03820 GT1_amsD_like This fam 43.6 3E+02 0.0065 27.1 11.5 108 33-151 209-318 (348)
204 PRK07649 para-aminobenzoate/an 43.4 27 0.00059 34.5 3.8 48 36-85 2-49 (195)
205 PRK07259 dihydroorotate dehydr 43.1 2.8E+02 0.006 29.0 11.5 58 94-151 222-285 (301)
206 PLN02781 Probable caffeoyl-CoA 42.7 1.1E+02 0.0023 31.2 8.1 58 31-88 91-153 (234)
207 PRK06978 nicotinate-nucleotide 42.6 3E+02 0.0065 29.4 11.6 90 35-131 178-273 (294)
208 PRK05567 inosine 5'-monophosph 42.5 2.2E+02 0.0047 32.3 11.3 100 32-135 239-360 (486)
209 PRK02083 imidazole glycerol ph 42.4 2.8E+02 0.0061 28.2 11.2 78 67-147 156-245 (253)
210 COG0157 NadC Nicotinate-nucleo 42.4 3E+02 0.0064 29.3 11.3 90 35-131 160-258 (280)
211 PF02581 TMP-TENI: Thiamine mo 42.2 1.7E+02 0.0037 28.2 9.2 69 61-133 100-175 (180)
212 PF00249 Myb_DNA-binding: Myb- 42.1 1E+02 0.0022 23.1 6.0 46 223-271 2-47 (48)
213 PRK13566 anthranilate synthase 42.1 56 0.0012 39.0 6.7 80 29-112 522-604 (720)
214 PF01729 QRPTase_C: Quinolinat 41.9 76 0.0017 30.9 6.6 94 36-133 53-153 (169)
215 cd01573 modD_like ModD; Quinol 41.8 2.7E+02 0.0058 29.2 11.0 70 60-134 187-257 (272)
216 PRK01911 ppnK inorganic polyph 41.0 1.3E+02 0.0029 31.8 8.8 102 34-154 1-122 (292)
217 PRK07695 transcriptional regul 40.8 2.7E+02 0.0058 27.3 10.4 67 62-132 101-174 (201)
218 cd03819 GT1_WavL_like This fam 40.1 3.6E+02 0.0078 27.5 11.8 109 33-151 216-329 (355)
219 cd04962 GT1_like_5 This family 39.8 2.3E+02 0.005 29.3 10.3 65 80-151 271-335 (371)
220 PF03328 HpcH_HpaI: HpcH/HpaI 39.8 2.4E+02 0.0052 28.1 10.0 83 65-149 9-106 (221)
221 cd00429 RPE Ribulose-5-phospha 39.6 1.1E+02 0.0023 29.8 7.3 55 80-135 128-194 (211)
222 cd03114 ArgK-like The function 39.3 25 0.00054 33.2 2.7 44 66-115 80-123 (148)
223 COG1713 Predicted HD superfami 39.2 10 0.00022 37.7 0.1 37 265-307 19-55 (187)
224 TIGR02855 spore_yabG sporulati 39.1 2.9E+02 0.0062 29.4 10.5 55 29-85 100-159 (283)
225 PRK14722 flhF flagellar biosyn 39.1 2.5E+02 0.0053 31.0 10.6 90 34-124 168-265 (374)
226 PLN02591 tryptophan synthase 39.1 4.6E+02 0.01 27.2 12.6 102 35-136 109-219 (250)
227 PRK06731 flhF flagellar biosyn 39.0 1.2E+02 0.0025 31.9 7.9 55 33-88 103-163 (270)
228 TIGR00959 ffh signal recogniti 39.0 2.5E+02 0.0053 31.6 10.8 86 32-119 127-227 (428)
229 TIGR00095 RNA methyltransferas 39.0 3.3E+02 0.0071 26.7 10.6 68 35-102 74-144 (189)
230 PRK13125 trpA tryptophan synth 38.8 3.7E+02 0.008 27.4 11.4 89 45-136 117-215 (244)
231 PRK06559 nicotinate-nucleotide 38.7 3.7E+02 0.0081 28.7 11.5 90 35-131 169-265 (290)
232 cd04732 HisA HisA. Phosphorib 38.7 4E+02 0.0087 26.4 11.7 68 65-134 147-218 (234)
233 PRK09140 2-dehydro-3-deoxy-6-p 38.6 2E+02 0.0044 28.8 9.2 85 59-145 14-99 (206)
234 PRK06106 nicotinate-nucleotide 38.6 3.1E+02 0.0068 29.1 10.9 90 36-132 167-263 (281)
235 cd00381 IMPDH IMPDH: The catal 37.9 3.9E+02 0.0084 28.7 11.8 99 32-134 105-225 (325)
236 TIGR02621 cas3_GSU0051 CRISPR- 37.6 19 0.00041 43.6 1.9 42 264-309 676-717 (844)
237 PRK07028 bifunctional hexulose 37.6 5.3E+02 0.011 28.6 13.2 73 79-152 131-212 (430)
238 KOG4175 Tryptophan synthase al 37.5 89 0.0019 31.8 6.2 40 106-145 95-140 (268)
239 cd00331 IGPS Indole-3-glycerol 37.1 3E+02 0.0064 27.2 10.2 68 82-149 48-117 (217)
240 PRK06543 nicotinate-nucleotide 36.7 5.4E+02 0.012 27.3 13.4 90 35-131 161-261 (281)
241 PRK04338 N(2),N(2)-dimethylgua 36.7 4.9E+02 0.011 28.7 12.6 110 34-152 82-201 (382)
242 PLN02716 nicotinate-nucleotide 36.5 3.5E+02 0.0076 29.1 11.0 96 36-131 173-286 (308)
243 cd03818 GT1_ExpC_like This fam 36.5 3.1E+02 0.0068 29.2 11.0 75 66-151 291-365 (396)
244 KOG3648 Golgi apparatus protei 36.3 33 0.00073 39.9 3.5 23 374-397 49-71 (1179)
245 PRK06774 para-aminobenzoate sy 35.9 45 0.00098 32.5 4.0 73 36-112 2-78 (191)
246 COG4122 Predicted O-methyltran 35.7 1.3E+02 0.0027 30.9 7.2 61 29-90 80-143 (219)
247 PRK14723 flhF flagellar biosyn 35.6 2.7E+02 0.0058 33.7 10.9 115 34-149 216-346 (767)
248 PF03060 NMO: Nitronate monoox 35.6 2.9E+02 0.0063 29.5 10.4 81 52-135 131-219 (330)
249 PRK12723 flagellar biosynthesi 35.5 3.9E+02 0.0085 29.6 11.6 92 32-125 205-306 (388)
250 PRK06843 inosine 5-monophospha 35.1 4E+02 0.0088 29.7 11.6 100 32-135 164-285 (404)
251 TIGR01163 rpe ribulose-phospha 35.0 3.4E+02 0.0073 26.3 10.1 54 93-146 43-97 (210)
252 COG2022 ThiG Uncharacterized e 34.9 4.1E+02 0.0088 27.8 10.6 117 32-151 99-232 (262)
253 TIGR03499 FlhF flagellar biosy 34.6 1.1E+02 0.0023 32.1 6.7 54 33-87 224-280 (282)
254 TIGR00734 hisAF_rel hisA/hisF 34.5 2.4E+02 0.0053 28.4 9.1 69 65-135 142-213 (221)
255 cd04731 HisF The cyclase subun 34.2 2.3E+02 0.005 28.5 9.0 71 63-135 26-100 (243)
256 COG0742 N6-adenine-specific me 33.9 1.2E+02 0.0027 30.2 6.7 56 33-89 66-124 (187)
257 PRK10416 signal recognition pa 33.9 1.7E+02 0.0036 31.4 8.2 93 31-125 140-253 (318)
258 cd01948 EAL EAL domain. This d 33.8 1.6E+02 0.0035 28.6 7.6 88 49-139 137-238 (240)
259 PRK06015 keto-hydroxyglutarate 33.5 2.6E+02 0.0057 28.1 9.0 80 62-143 11-91 (201)
260 PF03808 Glyco_tran_WecB: Glyc 33.2 2.6E+02 0.0056 27.0 8.7 77 32-112 47-132 (172)
261 KOG1562 Spermidine synthase [A 33.0 1.3E+02 0.0028 32.5 6.9 64 35-100 147-216 (337)
262 PRK04302 triosephosphate isome 33.0 5.1E+02 0.011 25.9 12.4 53 96-148 162-217 (223)
263 PRK09922 UDP-D-galactose:(gluc 33.0 5.1E+02 0.011 27.3 11.8 54 94-152 271-324 (359)
264 PLN02823 spermine synthase 32.6 98 0.0021 33.5 6.2 55 33-90 127-187 (336)
265 cd03804 GT1_wbaZ_like This fam 32.5 3.8E+02 0.0082 27.8 10.6 105 34-152 222-326 (351)
266 smart00426 TEA TEA domain. 32.4 31 0.00068 28.9 1.9 18 224-241 5-22 (68)
267 PRK03659 glutathione-regulated 32.3 2.1E+02 0.0047 33.2 9.4 94 33-135 423-518 (601)
268 PF04131 NanE: Putative N-acet 32.3 5.4E+02 0.012 25.9 10.8 100 33-136 64-174 (192)
269 cd06533 Glyco_transf_WecG_TagA 32.2 2.6E+02 0.0056 26.9 8.6 78 32-113 45-131 (171)
270 PF05582 Peptidase_U57: YabG p 32.0 3.6E+02 0.0078 28.8 10.0 57 27-85 99-160 (287)
271 PRK08072 nicotinate-nucleotide 31.9 4.8E+02 0.01 27.6 11.0 91 35-133 160-258 (277)
272 cd01568 QPRTase_NadC Quinolina 31.7 3.4E+02 0.0073 28.3 9.9 94 35-134 153-254 (269)
273 TIGR00064 ftsY signal recognit 31.6 4.3E+02 0.0093 27.6 10.6 55 32-88 99-163 (272)
274 TIGR00078 nadC nicotinate-nucl 31.5 5.4E+02 0.012 26.9 11.3 91 35-134 150-249 (265)
275 COG0159 TrpA Tryptophan syntha 31.1 1.5E+02 0.0032 31.3 7.0 57 95-151 82-145 (265)
276 PF03102 NeuB: NeuB family; I 31.1 1.8E+02 0.0039 30.1 7.6 95 44-143 56-160 (241)
277 TIGR03704 PrmC_rel_meth putati 30.8 4.4E+02 0.0095 27.0 10.4 90 33-125 110-228 (251)
278 COG0626 MetC Cystathionine bet 30.7 2.9E+02 0.0063 30.7 9.6 113 14-132 86-204 (396)
279 PF01081 Aldolase: KDPG and KH 30.4 1.3E+02 0.0029 30.1 6.3 83 60-144 13-96 (196)
280 cd01572 QPRTase Quinolinate ph 30.2 5E+02 0.011 27.1 10.9 89 35-132 154-251 (268)
281 PF01959 DHQS: 3-dehydroquinat 30.1 4.3E+02 0.0094 29.0 10.5 71 80-151 97-169 (354)
282 KOG1601 GATA-4/5/6 transcripti 30.1 6.9 0.00015 38.9 -2.9 112 37-150 19-137 (340)
283 PRK05031 tRNA (uracil-5-)-meth 29.9 5.8E+02 0.013 27.7 11.7 77 35-116 230-322 (362)
284 PLN02476 O-methyltransferase 29.8 2.2E+02 0.0048 30.1 8.2 59 30-88 140-203 (278)
285 TIGR00566 trpG_papA glutamine 29.8 71 0.0015 31.2 4.3 74 36-113 2-79 (188)
286 PRK01231 ppnK inorganic polyph 29.7 5.4E+02 0.012 27.3 11.1 104 31-153 2-119 (295)
287 cd00532 MGS-like MGS-like doma 29.6 1.3E+02 0.0027 26.9 5.5 22 40-61 8-29 (112)
288 PRK06895 putative anthranilate 29.6 64 0.0014 31.5 3.9 31 34-64 2-32 (190)
289 PRK14949 DNA polymerase III su 29.5 1.3E+02 0.0027 37.1 6.9 72 79-152 119-193 (944)
290 TIGR01182 eda Entner-Doudoroff 29.4 3.6E+02 0.0079 27.2 9.3 80 59-142 12-93 (204)
291 cd05212 NAD_bind_m-THF_DH_Cycl 29.3 1.8E+02 0.0038 27.5 6.6 54 31-91 26-83 (140)
292 TIGR03061 pip_yhgE_Nterm YhgE/ 29.2 1.2E+02 0.0027 28.7 5.7 52 31-85 41-102 (164)
293 PRK07455 keto-hydroxyglutarate 29.1 4.2E+02 0.0091 26.0 9.6 81 58-143 15-99 (187)
294 TIGR00417 speE spermidine synt 29.1 3.7E+02 0.008 27.7 9.6 55 33-90 96-156 (270)
295 PRK13125 trpA tryptophan synth 29.0 4.3E+02 0.0092 26.9 10.0 54 96-149 64-125 (244)
296 PRK08007 para-aminobenzoate sy 29.0 64 0.0014 31.6 3.8 73 36-112 2-78 (187)
297 PRK03562 glutathione-regulated 28.6 2.5E+02 0.0054 32.9 9.1 92 33-133 423-516 (621)
298 cd04726 KGPDC_HPS 3-Keto-L-gul 28.5 1.8E+02 0.0038 28.2 6.8 82 65-148 11-98 (202)
299 PRK15427 colanic acid biosynth 28.4 8E+02 0.017 26.7 13.6 107 34-151 254-369 (406)
300 cd00452 KDPG_aldolase KDPG and 28.3 3.8E+02 0.0082 26.1 9.1 70 61-136 102-172 (190)
301 PRK11359 cyclic-di-GMP phospho 28.3 4.6E+02 0.01 30.7 11.4 97 49-148 683-793 (799)
302 PF07652 Flavi_DEAD: Flaviviru 28.3 2.3E+02 0.0049 27.4 7.1 85 31-116 31-136 (148)
303 PLN02935 Bifunctional NADH kin 28.2 4.2E+02 0.0091 30.5 10.4 102 34-154 195-320 (508)
304 PRK12727 flagellar biosynthesi 27.8 4.7E+02 0.01 30.5 10.8 55 33-88 380-437 (559)
305 PRK03708 ppnK inorganic polyph 27.6 3.8E+02 0.0083 28.1 9.5 102 34-154 1-114 (277)
306 PRK00811 spermidine synthase; 27.5 4.4E+02 0.0095 27.5 9.9 57 31-90 98-161 (283)
307 TIGR01859 fruc_bis_ald_ fructo 27.4 2.5E+02 0.0054 29.6 8.1 84 63-153 152-244 (282)
308 PRK08185 hypothetical protein; 27.4 2.5E+02 0.0053 29.8 8.0 84 63-153 148-242 (283)
309 COG0673 MviM Predicted dehydro 27.3 6.9E+02 0.015 25.9 11.5 106 33-151 3-116 (342)
310 TIGR01305 GMP_reduct_1 guanosi 27.2 2.4E+02 0.0052 30.9 7.9 56 79-135 121-178 (343)
311 cd08179 NADPH_BDH NADPH-depend 27.1 6.3E+02 0.014 27.4 11.4 63 34-101 24-100 (375)
312 TIGR03449 mycothiol_MshA UDP-N 26.9 7.8E+02 0.017 26.1 12.2 107 34-151 253-367 (405)
313 TIGR02082 metH 5-methyltetrahy 26.7 5E+02 0.011 33.1 11.7 101 33-135 732-845 (1178)
314 TIGR00736 nifR3_rel_arch TIM-b 26.7 3.4E+02 0.0074 27.9 8.7 94 38-134 116-219 (231)
315 cd03802 GT1_AviGT4_like This f 26.5 6.3E+02 0.014 25.4 10.8 74 65-150 233-306 (335)
316 cd04724 Tryptophan_synthase_al 26.3 4.1E+02 0.0088 27.1 9.2 101 33-136 104-216 (242)
317 cd04949 GT1_gtfA_like This fam 26.2 6.1E+02 0.013 26.4 10.9 55 93-152 291-345 (372)
318 TIGR00479 rumA 23S rRNA (uraci 26.2 6.5E+02 0.014 27.7 11.5 81 34-115 315-397 (431)
319 COG2089 SpsE Sialic acid synth 26.1 4.2E+02 0.0091 28.9 9.4 87 43-134 89-179 (347)
320 TIGR01425 SRP54_euk signal rec 26.1 3.6E+02 0.0078 30.4 9.4 54 33-88 128-191 (429)
321 PF00290 Trp_syntA: Tryptophan 26.0 97 0.0021 32.4 4.6 55 93-147 73-134 (259)
322 PRK06806 fructose-bisphosphate 25.9 3.4E+02 0.0073 28.7 8.7 71 62-134 151-229 (281)
323 cd04731 HisF The cyclase subun 25.9 3.6E+02 0.0078 27.1 8.8 55 79-134 162-222 (243)
324 PRK03522 rumB 23S rRNA methylu 25.7 3.2E+02 0.0069 28.9 8.6 80 33-118 195-278 (315)
325 PF00977 His_biosynth: Histidi 25.7 3.3E+02 0.0072 27.5 8.4 71 63-134 146-219 (229)
326 COG4022 Uncharacterized protei 25.6 3.5E+02 0.0075 28.2 8.2 91 6-97 114-209 (286)
327 TIGR01361 DAHP_synth_Bsub phos 25.6 2.9E+02 0.0063 28.7 8.1 74 66-140 148-235 (260)
328 PLN02589 caffeoyl-CoA O-methyl 25.6 3.1E+02 0.0068 28.4 8.3 58 31-88 102-165 (247)
329 PF10111 Glyco_tranf_2_2: Glyc 25.4 5.9E+02 0.013 26.2 10.4 66 31-96 32-107 (281)
330 PRK04885 ppnK inorganic polyph 25.4 2E+02 0.0044 30.0 6.9 56 79-153 35-94 (265)
331 PRK07765 para-aminobenzoate sy 25.4 1E+02 0.0022 31.0 4.5 79 34-113 1-83 (214)
332 COG1411 Uncharacterized protei 25.2 2.7E+02 0.0058 28.5 7.2 57 79-135 151-210 (229)
333 TIGR00696 wecB_tagA_cpsF bacte 25.2 4E+02 0.0086 26.1 8.5 77 31-111 46-130 (177)
334 TIGR00735 hisF imidazoleglycer 25.1 5.2E+02 0.011 26.4 9.8 73 63-136 29-104 (254)
335 PRK07764 DNA polymerase III su 25.1 1.9E+02 0.0041 35.2 7.5 72 79-152 120-194 (824)
336 PRK02228 V-type ATP synthase s 25.0 4.2E+02 0.0092 23.4 7.9 66 32-101 18-89 (100)
337 cd08187 BDH Butanol dehydrogen 24.7 5E+02 0.011 28.2 10.1 64 33-101 28-105 (382)
338 COG3836 HpcH 2,4-dihydroxyhept 24.7 4.5E+02 0.0097 27.5 8.9 97 48-147 7-109 (255)
339 PRK02155 ppnK NAD(+)/NADH kina 24.7 5.9E+02 0.013 26.9 10.3 101 35-154 7-121 (291)
340 PLN02617 imidazole glycerol ph 24.5 5.6E+02 0.012 29.7 10.8 68 80-147 453-530 (538)
341 PRK13609 diacylglycerol glucos 24.5 7.2E+02 0.016 26.3 11.2 105 33-151 230-337 (380)
342 PF04321 RmlD_sub_bind: RmlD s 24.3 1.6E+02 0.0034 30.6 5.9 80 34-115 1-102 (286)
343 cd00405 PRAI Phosphoribosylant 24.3 3.9E+02 0.0084 26.2 8.4 51 79-132 120-178 (203)
344 TIGR01302 IMP_dehydrog inosine 24.0 2.5E+02 0.0053 31.6 7.7 63 67-133 227-291 (450)
345 PRK06552 keto-hydroxyglutarate 24.0 7E+02 0.015 25.1 10.3 92 51-144 8-103 (213)
346 PRK07998 gatY putative fructos 24.0 2.8E+02 0.0061 29.4 7.6 84 63-153 152-243 (283)
347 PRK04457 spermidine synthase; 23.9 8.1E+02 0.017 25.3 11.0 52 33-87 90-144 (262)
348 PRK04128 1-(5-phosphoribosyl)- 23.9 7.7E+02 0.017 25.0 11.3 79 64-144 30-113 (228)
349 PRK03612 spermidine synthase; 23.6 3.6E+02 0.0077 30.9 9.0 58 31-91 319-385 (521)
350 PRK00771 signal recognition pa 23.4 7.8E+02 0.017 27.7 11.5 55 33-88 123-184 (437)
351 PF13487 HD_5: HD domain; PDB: 23.3 46 0.00099 26.8 1.3 17 316-332 1-18 (64)
352 cd05013 SIS_RpiR RpiR-like pro 23.2 5E+02 0.011 22.6 9.0 83 35-119 15-100 (139)
353 TIGR03572 WbuZ glycosyl amidat 23.1 7.5E+02 0.016 24.6 11.0 72 63-136 29-104 (232)
354 PRK05637 anthranilate synthase 23.1 1.3E+02 0.0028 30.2 4.7 49 34-85 2-50 (208)
355 cd03801 GT1_YqgM_like This fam 23.0 7.3E+02 0.016 24.4 12.3 74 67-151 267-340 (374)
356 PRK05670 anthranilate synthase 23.0 1.1E+02 0.0023 29.9 4.1 48 36-85 2-49 (189)
357 PRK01581 speE spermidine synth 22.9 5E+02 0.011 28.8 9.5 57 31-90 172-237 (374)
358 PRK00654 glgA glycogen synthas 22.8 9.4E+02 0.02 26.6 12.1 109 33-152 311-428 (466)
359 cd03825 GT1_wcfI_like This fam 22.8 2.5E+02 0.0054 28.6 7.1 75 34-112 1-82 (365)
360 PRK01033 imidazole glycerol ph 22.7 5.2E+02 0.011 26.6 9.3 73 63-136 29-104 (258)
361 CHL00101 trpG anthranilate syn 22.7 99 0.0022 30.2 3.8 48 36-85 2-49 (190)
362 PRK14075 pnk inorganic polypho 22.6 6.8E+02 0.015 25.9 10.1 94 34-154 1-96 (256)
363 PRK13143 hisH imidazole glycer 22.6 1.6E+02 0.0035 29.0 5.3 44 34-85 1-44 (200)
364 PRK08883 ribulose-phosphate 3- 22.5 3.1E+02 0.0067 27.8 7.4 84 51-135 100-195 (220)
365 PLN02335 anthranilate synthase 22.4 97 0.0021 31.3 3.8 77 33-112 18-97 (222)
366 cd03798 GT1_wlbH_like This fam 22.4 7.6E+02 0.016 24.4 10.3 53 94-152 292-344 (377)
367 PF10237 N6-adenineMlase: Prob 22.3 1.1E+02 0.0024 29.7 4.0 97 31-135 46-145 (162)
368 cd04951 GT1_WbdM_like This fam 22.3 7.1E+02 0.015 25.2 10.3 105 33-151 219-325 (360)
369 PRK10867 signal recognition pa 22.3 5.8E+02 0.013 28.7 10.1 83 33-117 129-226 (433)
370 cd08185 Fe-ADH1 Iron-containin 22.2 4.4E+02 0.0095 28.6 9.1 63 34-101 26-102 (380)
371 PRK03372 ppnK inorganic polyph 22.2 9.8E+02 0.021 25.6 11.4 102 34-154 6-130 (306)
372 PRK09490 metH B12-dependent me 22.2 6.1E+02 0.013 32.5 11.2 101 33-135 751-864 (1229)
373 PRK09283 delta-aminolevulinic 21.9 1.5E+02 0.0033 32.1 5.1 66 63-131 224-290 (323)
374 PRK01033 imidazole glycerol ph 21.9 5.4E+02 0.012 26.4 9.3 68 66-134 154-225 (258)
375 TIGR01579 MiaB-like-C MiaB-lik 21.8 5.9E+02 0.013 27.9 10.1 92 44-149 11-107 (414)
376 PRK10060 RNase II stability mo 21.7 8.9E+02 0.019 28.3 12.1 98 48-148 545-656 (663)
377 PRK01362 putative translaldola 21.7 4.9E+02 0.011 26.4 8.6 80 53-136 97-185 (214)
378 COG3172 NadR Predicted ATPase/ 21.7 3.9E+02 0.0084 26.6 7.4 74 35-118 80-168 (187)
379 cd04740 DHOD_1B_like Dihydroor 21.5 9.1E+02 0.02 25.0 12.3 38 95-132 220-257 (296)
380 COG3959 Transketolase, N-termi 21.5 1.9E+02 0.0042 29.9 5.6 54 36-89 174-242 (243)
381 COG0352 ThiE Thiamine monophos 21.2 5.4E+02 0.012 26.1 8.8 68 62-133 110-184 (211)
382 smart00052 EAL Putative diguan 21.1 4.5E+02 0.0098 25.4 8.2 89 48-139 137-239 (241)
383 COG4262 Predicted spermidine s 21.1 3.3E+02 0.0072 30.4 7.5 62 29-92 309-378 (508)
384 PLN00191 enolase 21.1 7.2E+02 0.016 28.2 10.6 108 39-147 239-379 (457)
385 PRK00230 orotidine 5'-phosphat 21.0 3.6E+02 0.0077 27.3 7.6 76 64-142 12-94 (230)
386 TIGR02085 meth_trns_rumB 23S r 20.9 5.2E+02 0.011 28.1 9.3 94 33-135 255-352 (374)
387 PLN02898 HMP-P kinase/thiamin- 20.8 4.8E+02 0.01 29.5 9.3 66 61-130 395-467 (502)
388 PRK14114 1-(5-phosphoribosyl)- 20.6 4.8E+02 0.01 26.8 8.5 69 65-134 145-222 (241)
389 COG2200 Rtn c-di-GMP phosphodi 20.5 5.6E+02 0.012 26.2 9.0 98 47-147 139-250 (256)
390 TIGR01302 IMP_dehydrog inosine 20.5 8.5E+02 0.018 27.3 11.1 100 32-135 235-356 (450)
391 TIGR03569 NeuB_NnaB N-acetylne 20.4 4.7E+02 0.01 28.3 8.6 93 45-142 77-181 (329)
392 PRK12738 kbaY tagatose-bisphos 20.4 4E+02 0.0086 28.3 7.9 84 63-153 154-246 (286)
393 PRK11036 putative S-adenosyl-L 20.3 7.8E+02 0.017 24.8 10.0 66 33-101 66-135 (255)
394 COG0118 HisH Glutamine amidotr 20.1 2.4E+02 0.0052 28.6 5.9 38 33-70 1-38 (204)
395 TIGR02149 glgA_Coryne glycogen 20.1 9.9E+02 0.022 24.8 11.9 76 65-151 270-351 (388)
396 PLN02316 synthase/transferase 20.1 1.2E+03 0.026 29.4 12.9 114 33-152 869-998 (1036)
397 COG0421 SpeE Spermidine syntha 20.0 1.5E+02 0.0033 31.3 4.7 54 34-90 101-160 (282)
No 1
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=308.30 Aligned_cols=264 Identities=26% Similarity=0.369 Sum_probs=204.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC---C
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM---D 106 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~---~ 106 (596)
...++||+|||++..+..++.+|+..+|.|..|.+|++|+++..+++ +|+||+|++||+|||++++++|+. .+ .
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCcccc
Confidence 45789999999999999999999999999999999999999998775 999999999999999999999975 33 6
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccccCCcccccccCCChhhHHHHHHhh
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~~~ 186 (596)
+|||++|+.++.+...+++..||+||+.||+++.+|...+...++.++..... .+...|++
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~~----------------~~~~~~le--- 150 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFL----------------LDQNLYLE--- 150 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH---
Confidence 89999999999999999999999999999999999999887555433221110 00111111
Q ss_pred cCCcceeehhhhccccccccCCCccCCCCCCCCCCcccchHHHHHHHHHHHHHhccc-cccHHHHHHHhcCCCCChH-HH
Q 007601 187 EGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGID-KAVPKRILELMNVPGLTRE-NV 264 (596)
Q Consensus 187 eg~~~~~~a~~~~is~kt~~d~~~~~~~~s~~kK~~v~wt~eLh~~F~~av~~Lgl~-ka~pK~ILe~m~v~gltre-~t 264 (596)
..|+-++..+ +.+.+.. .++-+++..++ +.|+ +|
T Consensus 151 ---------------------------------------~~e~~~~~~e-~~~~~~~~~~t~~~L~~~~----E~R~~et 186 (360)
T COG3437 151 ---------------------------------------LQELRRRTEE-LAQIEDNLDETLEELAALL----EVRDYET 186 (360)
T ss_pred ---------------------------------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----Hhcccch
Confidence 0011111000 1111100 02334444433 5555 79
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee--eeeccCCCCChHHHHHHHH-hhcCCCCCCcccc
Q 007601 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQIPPQTLAALHA-ELLGRPTGNLVTA 341 (596)
Q Consensus 265 aSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGkL~~ee~~imk~-~~~G~~~~~~~~~ 341 (596)
+.|+.|+..|++.+ |.++||++++++.++.|+||||||||+| +||+|||+||+|||++||. ..+|+..-...
T Consensus 187 g~H~~Rv~~~~~~l---Ae~lgLse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~~~G~~il~~s-- 261 (360)
T COG3437 187 GDHLERVAQYSELL---AELLGLSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHPILGAEILKSS-- 261 (360)
T ss_pred hhHHHHHHHHHHHH---HHHhCCCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcchHHHHHHHHHH--
Confidence 99999999999999 9999999999999999999999999999 9999999999999999999 56675321111
Q ss_pred ccchHHHHhhcCCCcccC---CCCCCCCC
Q 007601 342 VDQPALLQATLQGPKCIP---ADHGFGVW 367 (596)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~---~~~~~~~~ 367 (596)
. + +++...+-...|| -|.|||-.
T Consensus 262 ~--~-~mq~a~eIa~~HHErwDGsGYPdg 287 (360)
T COG3437 262 E--R-LMQVAAEIARHHHERWDGSGYPDG 287 (360)
T ss_pred H--H-HHHHHHHHHHHhhhccCCCCCCCC
Confidence 1 1 6777777777777 69999987
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=3.2e-20 Score=186.91 Aligned_cols=119 Identities=30% Similarity=0.506 Sum_probs=112.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCCEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~--~~~ipVIl 111 (596)
++|||||||+.+.+.++..|+..||.|..+.++++|++.+... ||+||+|++||++||++++++||. ...+||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999999999999999999998753 999999999999999999999984 46789999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
+|+.++......+++.||+||+.|||++.||...++.++|+...
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 99999999999999999999999999999999999999987643
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.83 E-value=1.7e-20 Score=204.02 Aligned_cols=119 Identities=28% Similarity=0.477 Sum_probs=110.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC--LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~--~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ip 108 (596)
+++||||||++.+|++|+.++.+. ++++ .+|.||.+|++.+++.. |||||+||+||+|||+++++.++ ..|++.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 479999999999999999999875 6655 59999999999999875 99999999999999999999997 468999
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|++|++++++++.+|+++|+.|||+||++.++|.+++.++..+.
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998754
No 4
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.83 E-value=8.7e-21 Score=182.98 Aligned_cols=169 Identities=23% Similarity=0.303 Sum_probs=139.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVI 110 (596)
...-|.|||||..+|+.+..+|+..||.+..+.++.+.|..... ..|.++|+|+.||+++|+++..++. ....+|||
T Consensus 3 ~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI 80 (202)
T COG4566 3 REPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI 80 (202)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEE
Confidence 34569999999999999999999999999999999999988533 3589999999999999999999996 46789999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccccCCcccccccCCChhhHHHHHHhhcCCc
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~~~eg~~ 190 (596)
|+|+++|.....+|++.||.|||.||++.+.|..+++++++............. ........++.+|.+++..+..|..
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~-~~~~~l~tLT~RERqVl~~vV~G~~ 159 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQA-AIRARLATLTPRERQVLDLVVRGLM 159 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhcCHHHHHHHHHHHcCcc
Confidence 999999999999999999999999999999999999999976433222111000 0011235789999999999999988
Q ss_pred ceeehhhhccccc
Q 007601 191 GTFKAQRKRISAK 203 (596)
Q Consensus 191 ~~~~a~~~~is~k 203 (596)
++.++....++.+
T Consensus 160 NKqIA~dLgiS~r 172 (202)
T COG4566 160 NKQIAFDLGISER 172 (202)
T ss_pred cHHHHHHcCCchh
Confidence 7777777666544
No 5
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.83 E-value=3.5e-19 Score=174.86 Aligned_cols=119 Identities=29% Similarity=0.469 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~-~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVI 110 (596)
++|||||||+.+.+.-+.+++.. +|.+ .+|.+.++|..++++.. |||||+|+.||+.+|++|+.+|+ ....+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999986 6765 59999999999999876 89999999999999999999997 45678899
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
++|+-.+.+.+.+|+++||.|||+|||..+.|..++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877653
No 6
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.82 E-value=9.9e-20 Score=181.01 Aligned_cols=170 Identities=31% Similarity=0.364 Sum_probs=142.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~-y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVI 110 (596)
++|+||||++.++..++.+|+... ++| ..+.++.++++.++... ||+||+|+.||+++|+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 579999999999999999998764 775 47888999999977654 99999999999999999999997 67889999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcccccccccc--CCc----ccccc-cCCChhhHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS--GSL----EETDH-HKRGSDEIEYAS 183 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~~--~~l----e~~~~-~~ls~~Eie~l~ 183 (596)
++|.+.+.+++.++++.||++|+.|..+.++|..+++.+..+..+........ ... ..... ..++.+|.+++.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ 158 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLR 158 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998764443321110 000 11111 368999999999
Q ss_pred HhhcCCcceeehhhhccccccc
Q 007601 184 SVNEGTEGTFKAQRKRISAKEE 205 (596)
Q Consensus 184 ~~~eg~~~~~~a~~~~is~kt~ 205 (596)
.+.+|...+.++....++.+|+
T Consensus 159 lla~G~snkeIA~~L~iS~~TV 180 (211)
T COG2197 159 LLAEGLSNKEIAEELNLSEKTV 180 (211)
T ss_pred HHHCCCCHHHHHHHHCCCHhHH
Confidence 9999999999999888887766
No 7
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=2.4e-18 Score=187.59 Aligned_cols=120 Identities=41% Similarity=0.606 Sum_probs=113.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVIl 111 (596)
..+|||||||+.++..+...|+..||.|..+.++.+|++.+.+. .||+||+|+.||++||++++++|+ ..+.+|||+
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEE
Confidence 34799999999999999999999999999999999999999876 499999999999999999999996 458999999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
+|++.+.+.+.+|++.||.||+.|||+.++|..++.+++..+.
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999997543
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.75 E-value=3.2e-17 Score=142.80 Aligned_cols=110 Identities=37% Similarity=0.639 Sum_probs=104.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEc
Q 007601 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y-~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllT 113 (596)
||||||++..++.++..|+..++ .+..+.++.++++.++... ||+||+|+.||+++|+++++.|+. .+.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999899 9999999999999998765 999999999999999999999974 4689999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~ 147 (596)
...+.....++++.|+++|+.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998874
No 9
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.73 E-value=2.6e-16 Score=184.46 Aligned_cols=117 Identities=28% Similarity=0.406 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDL 107 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-----~~i 107 (596)
+++||||||++..+..++.+|+..++.+..+.++.+|++.++.. .||+||+|+.||++||++++++||.. +.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH--RFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 47899999999999999999999999999999999999999765 49999999999999999999999742 578
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|||++|+..+.+...++++.|+++|+.||++.++|..++.++++
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987754
No 10
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.71 E-value=1.4e-16 Score=156.36 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=138.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHhc-cCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY-N-VTTCSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGL-EMD 106 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y-~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd---mdGleLl~~Ir~-~~~ 106 (596)
+++|+||||++..+..++.+|+..++ . +..+.++.++++.+.... ||+||+|+.||+ .+|++++++|+. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47999999999999999999987654 3 668999999999887654 999999999998 599999999964 578
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccc---cCCcccccccCCChhhHHHHH
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN---SGSLEETDHHKRGSDEIEYAS 183 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~---~~~le~~~~~~ls~~Eie~l~ 183 (596)
+|||++|...+.....++++.||++|+.||.+.++|..+++.+..+.......... ...........++.+|.+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~ 160 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR 160 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765432211100 000000112458999999999
Q ss_pred HhhcCCcceeehhhhccccccc
Q 007601 184 SVNEGTEGTFKAQRKRISAKEE 205 (596)
Q Consensus 184 ~~~eg~~~~~~a~~~~is~kt~ 205 (596)
.+.+|.+...++....++.+|+
T Consensus 161 ~~~~G~s~~eIA~~l~iS~~TV 182 (216)
T PRK10840 161 LFAEGFLVTEIAKKLNRSIKTI 182 (216)
T ss_pred HHHCCCCHHHHHHHHCCCHHHH
Confidence 9999988888888877776655
No 11
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.69 E-value=7e-16 Score=153.13 Aligned_cols=122 Identities=25% Similarity=0.380 Sum_probs=110.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~-~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ 106 (596)
+|..++||||||++.++..++.+|+.. ++. +..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~ 78 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYP 78 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCC
Confidence 467799999999999999999999864 674 679999999999998754 999999999999999999999975 567
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
.+||++|+..+.+...++++.||++|+.||++.++|..+++++..+.
T Consensus 79 ~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 79 GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999887654
No 12
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=1.9e-15 Score=134.75 Aligned_cols=119 Identities=38% Similarity=0.585 Sum_probs=104.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCCE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~-eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ipV 109 (596)
.+.+||||||++..+..++.+|...++.+..+.++. +|++.++... .||+|++|+.||++||++++++++.. +.+|+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 467999999999999999999999999999999995 9999998752 39999999999999999999999865 67889
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHH-HHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~ee-L~~~l~~vlr 151 (596)
|++|++.......++++.|+++|+.||+...+ |...+.+.+.
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 99999999887788899999999999976666 7777765543
No 13
>PRK09483 response regulator; Provisional
Probab=99.67 E-value=1.2e-15 Score=147.31 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=135.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipV 109 (596)
+++|+||||++..+..++.+|+.. ++.+. .+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~i 78 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYTPDVKI 78 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeE
Confidence 468999999999999999999874 77775 789999999998765 499999999999999999999996 4678999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccc------cCCcccccccCCChhhHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN------SGSLEETDHHKRGSDEIEYAS 183 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~------~~~le~~~~~~ls~~Eie~l~ 183 (596)
|++|...+.....+++..|+++|+.||++.++|..++++++++.......... ...........++.+|.+++.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~ 158 (217)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIML 158 (217)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHHH
Confidence 99999999999999999999999999999999999999998765433221100 000111122458999999999
Q ss_pred HhhcCCcceeehhhhcccccc
Q 007601 184 SVNEGTEGTFKAQRKRISAKE 204 (596)
Q Consensus 184 ~~~eg~~~~~~a~~~~is~kt 204 (596)
.+..|.....++....++.++
T Consensus 159 ~~~~G~~~~~Ia~~l~is~~T 179 (217)
T PRK09483 159 MITKGQKVNEISEQLNLSPKT 179 (217)
T ss_pred HHHCCCCHHHHHHHhCCCHHH
Confidence 998887666555555554433
No 14
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.66 E-value=1.1e-15 Score=179.54 Aligned_cols=151 Identities=25% Similarity=0.316 Sum_probs=127.8
Q ss_pred ChhHHHHHHHcCC-----CCCCccccccccCCCC--------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 007601 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPDQ--------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (596)
Q Consensus 1 ~~~~~~l~~~~~G-----s~~g~~~~~~~~~~~~--------------fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~ 61 (596)
|++++++++.+|| +..|.++.+.+.+|.. ...+++||||||++..+..++.+|+..++.|.
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~ 709 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVV 709 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccccccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 5789999999999 3333333333332211 11357999999999999999999999999999
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHH
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~e 140 (596)
.+.++.+|++.+... .+||+||+|+.||++||+++++.|+. .+.+|||++|+....+...+++..|+++|+.||++.+
T Consensus 710 ~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 710 AVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred EeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 999999999988643 25899999999999999999999974 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 007601 141 ELKNIWQHVVRK 152 (596)
Q Consensus 141 eL~~~l~~vlrk 152 (596)
+|..++.++++.
T Consensus 789 ~L~~~i~~~~~~ 800 (914)
T PRK11466 789 VLGQLLAHYLQL 800 (914)
T ss_pred HHHHHHHHHhhh
Confidence 999999988764
No 15
>PLN03029 type-a response regulator protein; Provisional
Probab=99.65 E-value=3.2e-15 Score=149.41 Aligned_cols=122 Identities=28% Similarity=0.569 Sum_probs=109.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCC------------------CceEEEEeCCCCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKG------------------CFDVVLSDVHMPDMD 93 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~------------------~pDLVLlDI~MPdmd 93 (596)
..++||||||++..+..+..+|+..+|.|..+.++.++++.+..... .+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 45899999999999999999999999999999999999999864321 368999999999999
Q ss_pred HHHHHHHHhcc---CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 94 GFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 94 GleLl~~Ir~~---~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+++++.|+.. ..+|||++|+..+.+...++++.|++||+.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999753 5789999999999999999999999999999999999998888877654
No 16
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.65 E-value=1.8e-15 Score=143.80 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=125.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~-~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
++|+||||++..+..++..|... ++. +..+.++.++++.+... .||+||+|+.||+++|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 68999999999999999999754 554 56899999999998754 499999999999999999999996 4689999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccccCCcccccccCCChhhHHHHHHhhcCCcc
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEG 191 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~~~eg~~~ 191 (596)
+|...+.+....+++.|+++|+.||++.++|..+++.++++.......... .+.......++.+|.+.+..+.+|...
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~Lt~~E~~il~~l~~g~~~ 155 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAI--KLASGRQDPLTKRERQVAEKLAQGMAV 155 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHH--HHHhccccCCCHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999999999998754322111100 000111235788899999988888544
Q ss_pred eeehhh
Q 007601 192 TFKAQR 197 (596)
Q Consensus 192 ~~~a~~ 197 (596)
...+..
T Consensus 156 ~~Ia~~ 161 (196)
T PRK10360 156 KEIAAE 161 (196)
T ss_pred HHHHHH
Confidence 433433
No 17
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.64 E-value=5.4e-15 Score=143.77 Aligned_cols=118 Identities=27% Similarity=0.366 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+||||||++..+..+...|+..+|.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999887654 49999999999999999999999877789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.+...++++.||+||+.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999888753
No 18
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.64 E-value=2.7e-15 Score=173.90 Aligned_cols=149 Identities=21% Similarity=0.331 Sum_probs=122.6
Q ss_pred ChhHHHHHHHcCC-----CCCCccccccccCCCC---------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeE
Q 007601 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPDQ---------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNV 60 (596)
Q Consensus 1 ~~~~~~l~~~~~G-----s~~g~~~~~~~~~~~~---------------fp~girVLIVDDd~~i~~~L~~lL~~~~y~V 60 (596)
+++++.+++.||| +..|.++.+.+.+|.. ...+++||||||++..+..++.+|+..+|.+
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v 552 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDAFDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSV 552 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccccccccccccccceEEEcCCHHHHHHHHHHHHHcCCEE
Confidence 5789999999999 3334444333322211 1125899999999999999999999999999
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC-CCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD-LPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~-ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
..+.++.+|++.+... .||+||+|+.||++||++++++|+.. +. .|||++|+.... ...++++.|+++|+.||
T Consensus 553 ~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP 629 (779)
T PRK11091 553 DVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKP 629 (779)
T ss_pred EEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECC
Confidence 9999999999999754 49999999999999999999999753 34 489999987654 46788999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 007601 137 IREEELKNIWQHVVRK 152 (596)
Q Consensus 137 l~~eeL~~~l~~vlrk 152 (596)
++.++|..++++++..
T Consensus 630 ~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 630 LSVPALTAMIKKFWDT 645 (779)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999988753
No 19
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.63 E-value=7.4e-16 Score=157.17 Aligned_cols=115 Identities=30% Similarity=0.532 Sum_probs=105.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVIll 112 (596)
++|+|||||..+...|..+|++.+..+.+|+...+|++.+...+ |||||+|+.||+|+|++++++++ ..+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 47999999999999999999999988999999999999998875 99999999999999999999997 4578999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|++.+. ..+++...+.||+.||++.+.|.+++.++.+.
T Consensus 79 ssh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 79 SSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred ecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 998766 66788888899999999999999999988743
No 20
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.63 E-value=1.6e-14 Score=139.15 Aligned_cols=118 Identities=31% Similarity=0.501 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
++|+||||++..+..+...|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999999999999999999999988765 4999999999999999999999974 467999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+..+.+...++++.||+||+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999888654
No 21
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.63 E-value=5.9e-15 Score=175.00 Aligned_cols=120 Identities=30% Similarity=0.478 Sum_probs=111.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|++||+|||+++++.||+ .+.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3578999999999999999999999999999999999999998754 999999999999999999999975 4679999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|+....+...++++.|+++|+.||++.++|..++.++.+..
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876543
No 22
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.63 E-value=5.1e-15 Score=160.59 Aligned_cols=122 Identities=34% Similarity=0.502 Sum_probs=113.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ip 108 (596)
...+||||||+...++.++.+|...+|.+..+.++.+|+..+.+. +||+||+|+.||++||+++++++|. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 578999999999999999999999999999999999999999876 4999999999999999999999974 45799
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
||++++.++.....+||+.|++||+.||++..+|...+++.+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999988887654
No 23
>PRK11173 two-component response regulator; Provisional
Probab=99.63 E-value=8.3e-15 Score=144.53 Aligned_cols=118 Identities=20% Similarity=0.408 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|++|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999998765 49999999999999999999999876789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.....++++.||+||+.||++.++|...+++++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999888764
No 24
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.63 E-value=5.9e-15 Score=141.10 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=126.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
++|+|+||++..+..++..|+..++.+. .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+..|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999999999998899987 799999999988765 4999999999999999999999974 46789999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcccccccc---ccCCcccccccCCChhhHHHHHHhhcC
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---NSGSLEETDHHKRGSDEIEYASSVNEG 188 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~---~~~~le~~~~~~ls~~Eie~l~~~~eg 188 (596)
+|+..+.....+++..|+++|+.||++.++|..+++.++++......... ............++.+|.+++..+.+|
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g 158 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDG 158 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998875432111100 000001111235788899999988887
Q ss_pred Ccce
Q 007601 189 TEGT 192 (596)
Q Consensus 189 ~~~~ 192 (596)
....
T Consensus 159 ~~~~ 162 (204)
T PRK09958 159 KDNN 162 (204)
T ss_pred CCHH
Confidence 6433
No 25
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.63 E-value=4e-15 Score=175.50 Aligned_cols=150 Identities=27% Similarity=0.347 Sum_probs=126.2
Q ss_pred ChhHHHHHHHcCC-----CCCCccccccccCCCC--------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 007601 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPDQ--------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (596)
Q Consensus 1 ~~~~~~l~~~~~G-----s~~g~~~~~~~~~~~~--------------fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~ 61 (596)
|+|++++++.||| +..|.++.+.+.+|.. ...+.+||||||++..+..++.+|+..+|.|.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~ 730 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVT 730 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccccccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEE
Confidence 5799999999999 2333333333222210 11246899999999999999999999999999
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC---CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCC
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~---ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl 137 (596)
.+.++.+|++.+... .||+||+|+.||++||+++++.|+.. +. +|||++|+....+...++++.|+++|+.||+
T Consensus 731 ~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~ 808 (968)
T TIGR02956 731 LAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPV 808 (968)
T ss_pred EECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 999999999999864 59999999999999999999999753 23 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 007601 138 REEELKNIWQHVVRK 152 (596)
Q Consensus 138 ~~eeL~~~l~~vlrk 152 (596)
+.++|...+.+++..
T Consensus 809 ~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 809 VEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999888753
No 26
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.63 E-value=1.3e-14 Score=139.65 Aligned_cols=118 Identities=25% Similarity=0.422 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
++|+||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999998899999999999999988754 4999999999999999999999975 468999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+..+.+...++++.||+||+.||++.++|..++..++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 27
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.62 E-value=1.3e-14 Score=141.07 Aligned_cols=118 Identities=28% Similarity=0.413 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
|+||+|||++..+..+...|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4899999999999999999999999999999999999988765 4999999999999999999999975 468999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+..+.+...++++.||+||+.||++.++|...+..++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 28
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.62 E-value=7.2e-15 Score=177.70 Aligned_cols=149 Identities=24% Similarity=0.440 Sum_probs=127.4
Q ss_pred ChhHHHHHHHcCC-----CCCCccccccccCCC-----------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 007601 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPD-----------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (596)
Q Consensus 1 ~~~~~~l~~~~~G-----s~~g~~~~~~~~~~~-----------------~fp~girVLIVDDd~~i~~~L~~lL~~~~y 58 (596)
|++++++++++|| +..|.++.+.+.+|. .++.+++||||||++..+..++.+|+..++
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~ 983 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGY 983 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCC
Confidence 5789999999999 333333433333221 123467999999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCC
Q 007601 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (596)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl 137 (596)
++..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||++|+..+.....++++.|++||+.||+
T Consensus 984 ~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 984 DVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred EEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 999999999999999765 4999999999999999999999974 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 007601 138 REEELKNIWQHVVR 151 (596)
Q Consensus 138 ~~eeL~~~l~~vlr 151 (596)
+.++|...++++.+
T Consensus 1062 ~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1062 TLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999887654
No 29
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.61 E-value=1.7e-14 Score=139.95 Aligned_cols=118 Identities=22% Similarity=0.381 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
++||+|||++.....+...|+..+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988764 49999999999999999999999876789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.....++++.||+||+.||++.++|...+..++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999888764
No 30
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.61 E-value=2.7e-14 Score=138.09 Aligned_cols=118 Identities=25% Similarity=0.469 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
|+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999998899999999999999988754 49999999999999999999999866789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.+...++++.||+||+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999888654
No 31
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.61 E-value=3.2e-14 Score=138.46 Aligned_cols=117 Identities=32% Similarity=0.528 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+||||||++..+..++..|+..++.+..+.++.++++.+.. .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 489999999999999999999889999999999999998752 49999999999999999999999755459999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988754
No 32
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.61 E-value=3.6e-15 Score=148.15 Aligned_cols=156 Identities=14% Similarity=0.094 Sum_probs=124.7
Q ss_pred HHHHHHHHHh---CCCeEEEECCHHHHHHHHHhcCCCceEEE---EeCCCCCCCHHHHHHHHh-ccCCCCEEEEcCCCCH
Q 007601 46 LRILEQMLRR---CLYNVTTCSQAAVALDILRERKGCFDVVL---SDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRV 118 (596)
Q Consensus 46 ~~~L~~lL~~---~~y~V~~a~sg~eALe~L~e~~~~pDLVL---lDI~MPdmdGleLl~~Ir-~~~~ipVIllTa~~d~ 118 (596)
|..++.+|.. .+|.+..+.+++++++.+... .||++| +|+.||++||++++++|+ ..+.+|||++|++++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 5778888865 356677999999999988754 489998 688899999999999996 5688999999999888
Q ss_pred HHHHHHH-HcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccccCCcccccccCCChhhHHHHHHhhcCCcceeehhh
Q 007601 119 SAVMRGI-RHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQR 197 (596)
Q Consensus 119 ~~~~eAl-~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~~~eg~~~~~~a~~ 197 (596)
....+++ +.||.+|+.||.+.++|..+++.++++............ .......++.+|.+++..+.+|.....++..
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~--~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 158 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQW--YINQSRMLSPTEREILRFMSRGYSMPQIAEQ 158 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHh--hccCcCCCCHHHHHHHHHHHCCCCHHHHHHH
Confidence 7777766 799999999999999999999999987654332211100 0011346899999999999999998888888
Q ss_pred hccccccc
Q 007601 198 KRISAKEE 205 (596)
Q Consensus 198 ~~is~kt~ 205 (596)
..++.+|+
T Consensus 159 L~iS~~TV 166 (207)
T PRK11475 159 LERNIKTI 166 (207)
T ss_pred HCCCHHHH
Confidence 88876665
No 33
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.60 E-value=2.5e-14 Score=139.49 Aligned_cols=117 Identities=21% Similarity=0.467 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
|+||||||++..+..+...|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 4899999999999999999998899999999999999988654 4999999999999999999999975 468999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|+..+.+...++++.||+||+.||++.++|...+..++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764
No 34
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.59 E-value=3.2e-14 Score=140.36 Aligned_cols=118 Identities=19% Similarity=0.324 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+||||||++..+..+...|+..+|.+..+.++.++++.+... .||+||+|+.||+++|+++++.|+.....|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999999999999999999999999999999998765 49999999999999999999999876678999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.....++++.|++||+.||++..+|...+..++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9998888899999999999999999999999999888754
No 35
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.59 E-value=3.3e-14 Score=142.26 Aligned_cols=120 Identities=23% Similarity=0.360 Sum_probs=105.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
+++||||||++.++..++.+|... ++.+ ..+.++.++++.+......||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~v 80 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDV 80 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCE
Confidence 368999999999999999999864 6654 4789999999988642235999999999999999999999964 568999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|++|+..+.....++++.|+++|+.||++.++|..++.++...
T Consensus 81 I~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~ 123 (239)
T PRK10430 81 IVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876543
No 36
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.59 E-value=3.9e-14 Score=136.45 Aligned_cols=119 Identities=29% Similarity=0.498 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipV 109 (596)
..+||||||++..+..++..|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--GPDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc--CCCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 36899999999999999999998899999999999999988765 49999999999999999999999743 57899
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|+..+.....++++.||++|+.||++.++|...+..++++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999887653
No 37
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.58 E-value=4.9e-14 Score=137.63 Aligned_cols=117 Identities=29% Similarity=0.492 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipVI 110 (596)
.+||||||++..+..+...|+..++++..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 6899999999999999999998899999999999999988754 49999999999999999999999743 678999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
++|+..+.....++++.||+||+.||++.++|...+..++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988765
No 38
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.58 E-value=5.2e-14 Score=137.69 Aligned_cols=120 Identities=38% Similarity=0.587 Sum_probs=110.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
..++||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|||+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEE
Confidence 357999999999999999999998899999999999999988764 499999999999999999999998667899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+.+...++++.||++|+.||++.++|...+..++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999887654
No 39
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.58 E-value=5.3e-14 Score=139.58 Aligned_cols=117 Identities=25% Similarity=0.447 Sum_probs=106.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcC
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa 114 (596)
+||||||++..+..+...|+..+|.+..+.++.++++.+... .||+||+|+.||+++|+++++.++....+|+|++|+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE--TVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 799999999999999999999999999999999999988765 499999999999999999999998767899999998
Q ss_pred C-CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 115 D-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 115 ~-~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
. .+.....++++.||+||+.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5 46667789999999999999999999999999888753
No 40
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.57 E-value=1.4e-14 Score=168.81 Aligned_cols=120 Identities=29% Similarity=0.489 Sum_probs=110.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDL 107 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~--~~i 107 (596)
+-.+.+||||||++..++..+.+|+..|.+++.+.++.||++.+. ..+.||+||+|++||.|||+|..++||+. ..+
T Consensus 663 ~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~ 741 (786)
T KOG0519|consen 663 LLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYEATREIRKKERWHL 741 (786)
T ss_pred cccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchHHHHHHHHHhhcCCC
Confidence 345899999999999999999999999999999999999999997 23569999999999999999999999854 489
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
|||.+|++.+.+...++++.|.++||.||++.+.|..++...+
T Consensus 742 pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 742 PIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888765
No 41
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.57 E-value=7.3e-14 Score=137.53 Aligned_cols=119 Identities=29% Similarity=0.489 Sum_probs=109.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
..+||||||++..+..++..|+..+|.+..+.++.++++.+... .||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988764 4999999999999999999999974 46899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+++..+.+...++++.|++||+.||++.++|...+..++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999888653
No 42
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.57 E-value=7.2e-14 Score=135.07 Aligned_cols=119 Identities=29% Similarity=0.413 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ipVIl 111 (596)
.++||||||++..++.+...|...++.+..+.++.+++..+... .||+||+|+.||+.+|+++++.++.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFHPALPVIF 80 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 36899999999999999999998899999999999999988754 49999999999999999999999754 7899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+......+++.||++|+.||++.++|..++..++++.
T Consensus 81 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 999999988999999999999999999999999998887654
No 43
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.57 E-value=1.2e-13 Score=131.81 Aligned_cols=163 Identities=18% Similarity=0.266 Sum_probs=126.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
..+|+||||++..+..++..|... ++.+. .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999876 57765 788999999988754 4999999999999999999999974 467999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccc-----cccCCcccccccCCChhhHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----ENSGSLEETDHHKRGSDEIEYASS 184 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~-----~~~~~le~~~~~~ls~~Eie~l~~ 184 (596)
|++|+..+.....++++.|+++|+.||++.++|..+++.++++........ .............++.+|.+.+..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~ 160 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILRY 160 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998877543211110 000000011223578888888888
Q ss_pred hhcCCcceeehhh
Q 007601 185 VNEGTEGTFKAQR 197 (596)
Q Consensus 185 ~~eg~~~~~~a~~ 197 (596)
+.+|......+..
T Consensus 161 l~~g~s~~eIa~~ 173 (210)
T PRK09935 161 LVSGLSNKEIADQ 173 (210)
T ss_pred HHcCCCHHHHHHH
Confidence 8777554444433
No 44
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.56 E-value=1.8e-13 Score=131.44 Aligned_cols=117 Identities=29% Similarity=0.502 Sum_probs=107.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcC
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa 114 (596)
|||+||++..+..+...|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 68999999999999999998899999999999999988765 4999999999999999999999974 57899999999
Q ss_pred CCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 115 ~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
..+.+...++++.||+||+.||++.++|...+..++++..
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998887543
No 45
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.56 E-value=2.7e-14 Score=133.64 Aligned_cols=112 Identities=24% Similarity=0.454 Sum_probs=105.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEc
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllT 113 (596)
..||||||..+...|.+.+++-||.|.++.+.+|++..++... |+-.++|+.|.+.+|+++++.|+. ..+.+||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999998765 999999999999999999999974 5789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~ 148 (596)
++.+.+.+++|++.||++||.||-+.+++..++..
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999998877653
No 46
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.56 E-value=1.1e-13 Score=134.69 Aligned_cols=117 Identities=27% Similarity=0.422 Sum_probs=107.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhc-cCCCCEEE
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir~-~~~ipVIl 111 (596)
+||||||++..+..++..|+..+|.+..+.++.+++..+... .||+||+|+.||+ .+|+++++.++. .+.+|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 699999999999999999998899999999999999988765 4999999999997 589999999975 46799999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+.+...++++.||+||+.||++.++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888754
No 47
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.56 E-value=1.4e-14 Score=144.85 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=127.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH-HHHh-ccCCCCE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-EHIG-LEMDLPV 109 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl-~~Ir-~~~~ipV 109 (596)
...+|++|||+|..+..++.+|+...-.+..+.++.++++.+. .|||||+|+.||+++|++++ +.|+ ..+.++|
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~v 84 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcE
Confidence 3567999999999999999999864334557889999988642 38999999999999999997 5565 4678999
Q ss_pred EEEcCCCCHHHHHHHHH--cCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccc----cCC---cccccccCCChhhHH
Q 007601 110 IMMSADGRVSAVMRGIR--HGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN----SGS---LEETDHHKRGSDEIE 180 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~--~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~----~~~---le~~~~~~ls~~Eie 180 (596)
|++|+.++. ...++. .||.+|+.|+.+.++|..+++.+.++.......... ... ........++.+|.+
T Consensus 85 vvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10100 85 LLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKE 162 (216)
T ss_pred EEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHHHH
Confidence 999998874 455665 499999999999999999999998876443221110 000 000012358999999
Q ss_pred HHHHhhcCCcceeehhhhccccccc
Q 007601 181 YASSVNEGTEGTFKAQRKRISAKEE 205 (596)
Q Consensus 181 ~l~~~~eg~~~~~~a~~~~is~kt~ 205 (596)
++..+..|.....++....++..+.
T Consensus 163 Vl~l~~~G~s~~eIA~~L~iS~~TV 187 (216)
T PRK10100 163 ILNKLRIGASNNEIARSLFISENTV 187 (216)
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 9999999988877777766665544
No 48
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.55 E-value=9.6e-14 Score=137.30 Aligned_cols=116 Identities=26% Similarity=0.406 Sum_probs=100.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~-y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
+++|+||||++..++.++.+|+..+ +. +..+.++.++++.+... .||++|+|+.||+++|+++++.++.....+||
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii 78 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIV 78 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEE
Confidence 3799999999999999999998876 33 45789999999988765 49999999999999999999999644445688
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
++|+++ +...++++.||.+|+.||++.++|..++.++.+.
T Consensus 79 ~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 79 FVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888876 4578999999999999999999999999988754
No 49
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.54 E-value=7.7e-14 Score=163.50 Aligned_cols=119 Identities=30% Similarity=0.490 Sum_probs=110.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ip 108 (596)
.+++||||||++..+..++.+|+..++.|..+.++.+|++.+.+. .||+||+|+.||++||+++++.|+. .+.+|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR--PFDLILMDIQMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCC
Confidence 368999999999999999999999999999999999999999865 4999999999999999999999974 45799
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
||++|+..+.+...++++.|++||+.||++.++|...+.+++..
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999887653
No 50
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.54 E-value=1.1e-13 Score=137.21 Aligned_cols=162 Identities=12% Similarity=-0.021 Sum_probs=128.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHHHHHHh-ccCCC
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIG-LEMDL 107 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y---~V~~a~sg~eALe~L~e~~~~pDLVLlDI~--MPdmdGleLl~~Ir-~~~~i 107 (596)
+.|+||||++.++..++.+|+..++ .+..+.++.++++.+... .||+||+|+. |++.+|++++++|+ ..+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999986542 456899999999988754 4999999966 88889999999996 46789
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCe-EEeCCCCHHHHHHHHHHHHHhhccccccccccCCcccccccCCChhhHHHHHHhh
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~D-YL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~~~ 186 (596)
+||++|+.++..... ++..|+.. |+.|+.+.++|..+++.+.++........ .. ....++.+|.+++..+.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~------~~-~~~~LT~RE~eVL~lla 150 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL------NL-PTLSLSRTESSMLRMWM 150 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc------cC-CcccCCHHHHHHHHHHH
Confidence 999999998876543 55555554 89999999999999999987654332110 00 11248999999999999
Q ss_pred cCCcceeehhhhccccccc
Q 007601 187 EGTEGTFKAQRKRISAKEE 205 (596)
Q Consensus 187 eg~~~~~~a~~~~is~kt~ 205 (596)
+|.+...++.+..++.+|+
T Consensus 151 ~G~snkeIA~~L~iS~~TV 169 (207)
T PRK15411 151 AGQGTIQISDQMNIKAKTV 169 (207)
T ss_pred cCCCHHHHHHHcCCCHHHH
Confidence 9999888888887776655
No 51
>PRK14084 two-component response regulator; Provisional
Probab=99.53 E-value=1.9e-13 Score=136.29 Aligned_cols=116 Identities=19% Similarity=0.383 Sum_probs=101.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~-y-~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
++|+||||++..+..++.+|+..+ + .+..+.++.++++.+.+. .||++|+|+.||+++|+++++.|+. .+..+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998764 4 567899999999998765 4999999999999999999999975 3456788
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|++++ ...++++.|+.+|+.||++.++|..++.++.+..
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 8888764 4678999999999999999999999999887543
No 52
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.53 E-value=5.5e-14 Score=150.40 Aligned_cols=119 Identities=22% Similarity=0.425 Sum_probs=107.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~i 107 (596)
....+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.+. .||+||+|+.||+++|+++++.+++ .+.+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~--~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~ 229 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET--NYDLVIVSANFENYDPLRLCSQLRSKERTRYV 229 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC--CCCEEEecCCCCCchHhHHHHHHHhccccCCC
Confidence 4568899999999999999999976 47777899999999987665 4999999999999999999999974 3689
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|||++|++.+.++..++++.||+||+.||++.++|...+....++
T Consensus 230 ~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 230 PILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred cEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888776553
No 53
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.51 E-value=9e-13 Score=126.83 Aligned_cols=119 Identities=28% Similarity=0.490 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
++|+++||++.....++..|...++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999999999998899999999999999888654 4999999999999999999999964 467999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
|...+.+...++++.|+++|+.||++.++|...++.++++..
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~ 120 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999998877543
No 54
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.51 E-value=4.1e-13 Score=126.63 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=127.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
.++|||+||++..+..+...|... ++.+ ..+.++.++++.+... .||+|++|+.|++++|+++++.++. .+..|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 80 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRWPAMNI 80 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 478999999999999999999875 4664 4789999999887654 4999999999999999999999974 567899
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcccccccc-----ccCCcccccccCCChhhHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSGSLEETDHHKRGSDEIEYASS 184 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~-----~~~~le~~~~~~ls~~Eie~l~~ 184 (596)
|++|+..+......++..|+.+|+.||++..+|...+..++++......... ............++.+|.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~l 160 (211)
T PRK15369 81 LVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQILKL 160 (211)
T ss_pred EEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765422111000 00000111223578888999888
Q ss_pred hhcCCcceeehhhhcc
Q 007601 185 VNEGTEGTFKAQRKRI 200 (596)
Q Consensus 185 ~~eg~~~~~~a~~~~i 200 (596)
+.+|......+....+
T Consensus 161 ~~~g~~~~~Ia~~l~~ 176 (211)
T PRK15369 161 ITEGYTNRDIAEQLSI 176 (211)
T ss_pred HHCCCCHHHHHHHhCC
Confidence 8877655444444333
No 55
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.51 E-value=3.8e-13 Score=135.85 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=104.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-C--CC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-M--DL 107 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~--~i 107 (596)
+++||||||++..+..+...|+.. ++.+ ..+.++.++++.+.... ||+||+|+.||++||+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 579999999999999999999864 4554 47999999999998654 9999999999999999999999743 2 37
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|||++|+..+.....++++.|+++|+.||++.++|...+.++++.
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999887654
No 56
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.50 E-value=2.4e-13 Score=147.46 Aligned_cols=119 Identities=38% Similarity=0.642 Sum_probs=110.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVI 110 (596)
..++||||||++..+..++..|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 468999999999999999999999999999999999999988764 499999999999999999999996 45689999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
++|++.+.+...++++.|+.||+.||++.++|...+.++++.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888764
No 57
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.50 E-value=5.9e-13 Score=127.12 Aligned_cols=168 Identities=18% Similarity=0.294 Sum_probs=129.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~-~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
...+|+||||++..+..++..|... ++.+ ..+.++.+++..+... .||+||+|+.|++++|+++++.++. .+..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 4578999999999999999999764 5554 4689999999988765 4999999999999999999999964 46789
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccc----c-c-cC--CcccccccCCChhhHH
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH----E-N-SG--SLEETDHHKRGSDEIE 180 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~----~-~-~~--~le~~~~~~ls~~Eie 180 (596)
+|+++...+......+++.|+++|+.||++.++|...+..++++........ . . .. .........++.+|.+
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 162 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999999887542211110 0 0 00 0000112248889999
Q ss_pred HHHHhhcCCcceeehhhhccc
Q 007601 181 YASSVNEGTEGTFKAQRKRIS 201 (596)
Q Consensus 181 ~l~~~~eg~~~~~~a~~~~is 201 (596)
++..+.+|......+....++
T Consensus 163 vl~~l~~g~~~~~ia~~l~is 183 (216)
T PRK10651 163 ILKLIAQGLPNKMIARRLDIT 183 (216)
T ss_pred HHHHHHcCCCHHHHHHHcCCC
Confidence 999988886655555544443
No 58
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.49 E-value=1.5e-13 Score=128.99 Aligned_cols=120 Identities=31% Similarity=0.461 Sum_probs=108.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+.+|+||||++.....++..|...++.+..+.++.++++.+... .||+||+|..|++++|+++++.++. .+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 457899999999999999999998899999999999999888654 4999999999999999999999964 4678999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|...+......+++.|+.+|+.||++.+++...+..++...
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888877643
No 59
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.48 E-value=5.3e-13 Score=145.62 Aligned_cols=119 Identities=34% Similarity=0.525 Sum_probs=109.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
+...+||||||++..+..+...|...+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 4567899999999999999999999999999999999999998765 4999999999999999999999964 568999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|++|++.+.+...++++.|++||+.||++.++|...+.+++.
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999998887664
No 60
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.48 E-value=9.6e-13 Score=125.29 Aligned_cols=160 Identities=22% Similarity=0.250 Sum_probs=124.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~-~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
.++||||||++..+..++..|+. .++.+. .+.++.+++..+... .||+||+|..||+++|+++++.++. .+..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 47899999999999999999975 467765 689999999988654 4999999999999999999999974 457899
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccc----cccC--CcccccccCCChhhHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH----ENSG--SLEETDHHKRGSDEIEYAS 183 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~----~~~~--~le~~~~~~ls~~Eie~l~ 183 (596)
|+++...+......+++.|+++|+.||++.++|..+++.++++........ .... .........++.+|.+++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~ 163 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHHH
Confidence 999999988889999999999999999999999999998776532211100 0000 0001112357889999998
Q ss_pred HhhcCCcceee
Q 007601 184 SVNEGTEGTFK 194 (596)
Q Consensus 184 ~~~eg~~~~~~ 194 (596)
.+.+|......
T Consensus 164 ~~~~g~s~~~i 174 (215)
T PRK10403 164 ELAQGLSNKQI 174 (215)
T ss_pred HHHCCCCHHHH
Confidence 88877554433
No 61
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.48 E-value=1.5e-12 Score=127.44 Aligned_cols=118 Identities=27% Similarity=0.419 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+|+||||++.....+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 3899999999999999999999999999999999999988764 49999999999999999999999877789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
...+......+++.|++||+.||++.++|...+..++++.
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 9999888899999999999999999999999998877653
No 62
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.47 E-value=9e-13 Score=144.69 Aligned_cols=117 Identities=35% Similarity=0.493 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
.+||||||++..+..++.+|+..+|.+..+.++.+++..+... .||+||+|+.||++||+++++.|+. .+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~--~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 5899999999999999999999999999999999999999765 4999999999999999999999974 567999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|+..+.+...++++.|+.+|+.||++.++|...+.+++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888764
No 63
>PRK15115 response regulator GlrR; Provisional
Probab=99.47 E-value=7.9e-13 Score=143.99 Aligned_cols=118 Identities=29% Similarity=0.522 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVIl 111 (596)
..+||||||++..+..+...|+..+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 47899999999999999999999999999999999999998765 499999999999999999999996 456799999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+|+..+.....++++.|++||+.||++.++|...+.++++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 64
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.45 E-value=1.7e-12 Score=152.28 Aligned_cols=150 Identities=23% Similarity=0.253 Sum_probs=125.4
Q ss_pred ChhHHHHHHHcCC-----CCCCccccccccCCC---------C--------CCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 007601 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPD---------Q--------FPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (596)
Q Consensus 1 ~~~~~~l~~~~~G-----s~~g~~~~~~~~~~~---------~--------fp~girVLIVDDd~~i~~~L~~lL~~~~y 58 (596)
+++++++++.+|| +..|.++.+.+.+|. . .+.+.+||||||++..+..++..|...+|
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~ 722 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGY 722 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 4789999999999 334444444333221 0 01256899999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCC
Q 007601 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (596)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl 137 (596)
++..+.++.++++.+.+....||+||+ .||+++|+++++.|+ ..+.+|||++|+..+.....+++..| +||+.||+
T Consensus 723 ~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 723 EPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 999999999999999765445899999 699999999999996 45789999999999988899999999 99999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 007601 138 REEELKNIWQHVVRKR 153 (596)
Q Consensus 138 ~~eeL~~~l~~vlrk~ 153 (596)
+..+|..++.++++..
T Consensus 800 ~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 800 SSRTLAYALRTALATA 815 (828)
T ss_pred CHHHHHHHHHHHHccc
Confidence 9999999999988643
No 65
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.45 E-value=1.2e-12 Score=142.77 Aligned_cols=113 Identities=25% Similarity=0.403 Sum_probs=103.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHh-ccCCCCE
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG-LEMDLPV 109 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-----mdGleLl~~Ir-~~~~ipV 109 (596)
||||||++..+..+...| .+|.|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 589999999999999999865 4999999999996 89999999996 4578999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|++|+..+.+...++++.||+||+.||++.++|..++++++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999887653
No 66
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.44 E-value=1.6e-12 Score=137.32 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=90.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLR-RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~-~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
++||||||++..+..++.+|+ ..++.+. .+.++.++++.+.+. .||+|++|+.||+++|++++++|+....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~--~pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ--PPDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc--CCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5578775 789999999999865 499999999999999999999997666799999
Q ss_pred EcCCCC--HHHHHHHHHcCCCeEEeCCC
Q 007601 112 MSADGR--VSAVMRGIRHGACDYLIKPI 137 (596)
Q Consensus 112 lTa~~d--~~~~~eAl~~GA~DYL~KPl 137 (596)
+++..+ .+...++++.|+.+|+.||+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 998753 56677899999999999998
No 67
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.41 E-value=2.6e-12 Score=140.55 Aligned_cols=115 Identities=35% Similarity=0.516 Sum_probs=106.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcC
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa 114 (596)
||||||++..+..+...|+..+|.+..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999988765 4999999999999999999999964 56789999999
Q ss_pred CCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 115 ~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+.+.....++++.|++||+.||++.++|...+.+++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887754
No 68
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.41 E-value=5.8e-13 Score=138.36 Aligned_cols=63 Identities=57% Similarity=0.869 Sum_probs=60.8
Q ss_pred CCCCCcccchHHHHHHHHHHHHHhccccccHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHh
Q 007601 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLN 279 (596)
Q Consensus 217 ~~kK~~v~wt~eLh~~F~~av~~Lgl~ka~pK~ILe~m~v~gltre~taSHLqRvr~y~k~L~ 279 (596)
..||+|+.|+.|||++|++||++||.++|+||+|+++|++.++||++|+|||||||.+.+++.
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~ 294 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA 294 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999999999999999999999999999999999999999883
No 69
>PRK13435 response regulator; Provisional
Probab=99.40 E-value=6.8e-12 Score=114.96 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=102.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCCE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP-dmdGleLl~~Ir~~~~ipV 109 (596)
..++|||+||++.....++..|+..++.+. .+.++.++++.+... .||+||+|..|+ +.+|+++++.++..+.+|+
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pi 81 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEV 81 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCE
Confidence 357999999999999999999998888876 789999999988654 499999999998 5899999999976678999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
|+++...+. ..++..|+++|+.||++.++|...++++..++.
T Consensus 82 i~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 82 VFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 999876542 467789999999999999999999998876543
No 70
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.39 E-value=2.2e-11 Score=104.23 Aligned_cols=118 Identities=33% Similarity=0.568 Sum_probs=104.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ip 108 (596)
.++|+++|+++.....++..|+..++. +..+.++.++++.+... .+|++++|..+++++|+++++.++.. +.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999988884 77889999999988654 49999999999999999999999743 5689
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+|+++...+.....++++.|+.+|+.||++.+++...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999888888889999999999999999999999999887754
No 71
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.38 E-value=1e-11 Score=132.96 Aligned_cols=118 Identities=35% Similarity=0.513 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipVI 110 (596)
.+||||||++..+..+...|...++.+..+.++.++++.+... .||+||+|+.||+.+|+++++.|+.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 4899999999999999999988899999999999999999765 49999999999999999999999753 468999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|+..+.....++++.|+++|+.||++.++|..++..+++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877643
No 72
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.37 E-value=1.1e-11 Score=131.83 Aligned_cols=104 Identities=33% Similarity=0.454 Sum_probs=91.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
+++||||||++..+..++.+|+.. ++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 77776 8999999999887654 9999999999999999999999755459999
Q ss_pred EEcCCC--CHHHHHHHHHcCCCeEEeCCCC
Q 007601 111 MMSADG--RVSAVMRGIRHGACDYLIKPIR 138 (596)
Q Consensus 111 llTa~~--d~~~~~eAl~~GA~DYL~KPl~ 138 (596)
++|+.. +.....++++.|++||+.||++
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999753 3466778999999999999984
No 73
>PRK13557 histidine kinase; Provisional
Probab=99.35 E-value=1.7e-11 Score=134.13 Aligned_cols=150 Identities=23% Similarity=0.317 Sum_probs=124.2
Q ss_pred ChhHHHHHHHcCC-----CCCCccccccccCCCC----------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCe
Q 007601 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPDQ----------------FPAGLRVLVVDDDITCLRILEQMLRRCLYN 59 (596)
Q Consensus 1 ~~~~~~l~~~~~G-----s~~g~~~~~~~~~~~~----------------fp~girVLIVDDd~~i~~~L~~lL~~~~y~ 59 (596)
|++++.+++.+|| +..|.++.+.+.+|.. -+.+.+||||||++..+..+..+|+..+|.
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~ 441 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQEPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYR 441 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCCCCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCe
Confidence 4789999999999 3333444443333210 012568999999999999999999988999
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCC
Q 007601 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (596)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl 137 (596)
+..+.++.++++.+... ..||+||+|..|++ ++|+++++.|+. .+.+|||++|...+......++..|+.+|+.||+
T Consensus 442 v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~ 520 (540)
T PRK13557 442 TLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPY 520 (540)
T ss_pred EEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCC
Confidence 99999999999988643 24999999999997 999999999974 5679999999999888888889999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 007601 138 REEELKNIWQHVVR 151 (596)
Q Consensus 138 ~~eeL~~~l~~vlr 151 (596)
+.++|...++.++.
T Consensus 521 ~~~~l~~~l~~~~~ 534 (540)
T PRK13557 521 RRAELARRVRMVLD 534 (540)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999887764
No 74
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.35 E-value=7.4e-12 Score=142.85 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=104.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
.++||||||++..+..++.+|...+|.|..+.++.++++.+... .|||||+|+.||+++|++++++|+. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999988899999999999999988754 4999999999999999999999974 57899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCH--HHHHHHHHHHHHh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIRE--EELKNIWQHVVRK 152 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~--eeL~~~l~~vlrk 152 (596)
+|+..+.+...++++.|+.||+.||... ..+..+++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999654 3566666665543
No 75
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.34 E-value=6.7e-12 Score=132.89 Aligned_cols=103 Identities=35% Similarity=0.479 Sum_probs=92.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
++|||||||....|+.++++|...+ +.|.++.|+.+|++.+.+.. ||+|.+|+.||.|||++++++|-....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 4799999999999999999999886 56679999999999998875 9999999999999999999999656899999
Q ss_pred EEcCCCC--HHHHHHHHHcCCCeEEeCCC
Q 007601 111 MMSADGR--VSAVMRGIRHGACDYLIKPI 137 (596)
Q Consensus 111 llTa~~d--~~~~~eAl~~GA~DYL~KPl 137 (596)
|+++... .+...+++++||.||+.||.
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~ 107 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPS 107 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCC
Confidence 9887654 56678899999999999995
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.25 E-value=1.3e-10 Score=116.52 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=99.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdGleLl~~Ir~~~~ipVI 110 (596)
..+|||+||++..+..++..|+..++.+. .+.++.++++.+... .||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 45799999999999999999998888887 788999999998764 4999999999995 8999999999754489999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
++|+..+... .+...++.+|+.||++.++|...+++++..
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9999876543 344567899999999999999999887653
No 77
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.19 E-value=1.7e-10 Score=112.54 Aligned_cols=120 Identities=24% Similarity=0.327 Sum_probs=103.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
..++||++||++..+..+...|...+|.+. .+.++.++.+.+.... ||+||+|+.||..|-.+-+.....+...|||
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIV 81 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEE
Confidence 357899999999999999999999999754 7778888888887765 9999999999998844444444456788999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|++++.+.+..+++.|+..|+.||++...|+.++.-+..+.
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776544
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.16 E-value=6.1e-10 Score=90.51 Aligned_cols=111 Identities=35% Similarity=0.565 Sum_probs=98.8
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcCC
Q 007601 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSAD 115 (596)
Q Consensus 37 LIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa~ 115 (596)
+++|+++..+..+...+...++.+..+.+..+++..+... .+|++++|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 4789999999999999998899999999999999988764 4999999999999999999999964 467899999988
Q ss_pred CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 007601 116 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 116 ~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~v 149 (596)
.......+++..|+.+|+.||++.++|...+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 8788888999999999999999999998887653
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.08 E-value=7.4e-10 Score=115.86 Aligned_cols=90 Identities=24% Similarity=0.461 Sum_probs=80.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCC-CH
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI-RE 139 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl-~~ 139 (596)
.+.++.+|++.+... .||+||+|+.||+++|++++++++. .+.+|||++|+..+.+...++++.||+||+.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 478899999998764 4999999999999999999999974 4679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHhh
Q 007601 140 EELKNIWQHVVRKR 153 (596)
Q Consensus 140 eeL~~~l~~vlrk~ 153 (596)
++|..++.++++..
T Consensus 80 ~~L~~~i~~~l~~~ 93 (303)
T PRK10693 80 NRLREMVFACLYPS 93 (303)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999888877543
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.07 E-value=5e-10 Score=114.10 Aligned_cols=115 Identities=29% Similarity=0.445 Sum_probs=99.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
+++|++|||++..++.++.++... ..+ +..+.++.++++.+... .+|++++|+.||+++|+++...|+. .+..+|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~I 78 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAI 78 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeE
Confidence 478999999999999999999832 222 23788999999999876 5999999999999999999999986 566789
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
+++|++++. +..+++..|.||+.||++.++|...+....+
T Consensus 79 vfvt~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 79 VFVTAHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred EEEEehHHH--HHHHHhHHHHhhhcCcchHHHHHHHHHHHHH
Confidence 999998766 6778899999999999999999999987655
No 81
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.05 E-value=3.9e-10 Score=90.21 Aligned_cols=54 Identities=69% Similarity=1.065 Sum_probs=51.7
Q ss_pred CCcccchHHHHHHHHHHHHHhcc-ccccHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 007601 220 KPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHLQKFRL 273 (596)
Q Consensus 220 K~~v~wt~eLh~~F~~av~~Lgl-~ka~pK~ILe~m~v~gltre~taSHLqRvr~ 273 (596)
|+++.|+.|+|..|+++++.+|. +.|+||+|+++|+..++|+++|+||+|||++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999999998 8999999999999999999999999999985
No 82
>PRK15029 arginine decarboxylase; Provisional
Probab=99.01 E-value=2.2e-09 Score=124.37 Aligned_cols=119 Identities=12% Similarity=0.179 Sum_probs=94.6
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH----HHHHHH
Q 007601 34 LRVLVVDDDIT--------CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF----KLLEHI 101 (596)
Q Consensus 34 irVLIVDDd~~--------i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGl----eLl~~I 101 (596)
|||||||||.. +++.++..|+..+|+|..+.++.+|++.+.... .||+||+|++||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~-~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC-CCcEEEEECCCCCCccchhHHHHHHHH
Confidence 48999999995 699999999999999999999999999997632 49999999999999997 899999
Q ss_pred hc-cCCCCEEEEcCCCC--HHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHhhc
Q 007601 102 GL-EMDLPVIMMSADGR--VSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRW 154 (596)
Q Consensus 102 r~-~~~ipVIllTa~~d--~~~~~eAl~~GA~DYL~KPl-~~eeL~~~l~~vlrk~~ 154 (596)
|. ..++|||++|+..+ .....+.+ --+++|+-+-- +.+-+...+....+++.
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 135 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLL-ELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHH-HhhheEEEecCCCHHHHHHHHHHHHHHHH
Confidence 75 46899999999986 33333333 34677888874 44545555666665554
No 83
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=98.98 E-value=2.3e-10 Score=121.98 Aligned_cols=74 Identities=11% Similarity=0.221 Sum_probs=67.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee--eeeccCCCCChHHHHHHHHh-hcCC
Q 007601 257 PGLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQIPPQTLAALHAE-LLGR 333 (596)
Q Consensus 257 ~gltre~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGkL~~ee~~imk~~-~~G~ 333 (596)
.....+.|..|-.||..|+..| |+++||+++.++.+..|+.||||||++| +||.|||+||++||++||.| ..|+
T Consensus 142 ~~~kd~~t~~Hs~~va~~a~~i---a~~lgl~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~ 218 (344)
T COG2206 142 IKAKDDYTYGHSVRVAELAEAI---AKKLGLSEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGY 218 (344)
T ss_pred ccccchhHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHH
Confidence 3344557999999999999999 9999999999999999999999999999 99999999999999999995 4464
No 84
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.76 E-value=9.5e-08 Score=112.45 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=111.8
Q ss_pred ChhHHHHHHHcCC-----CCCCccccccccCCC-------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEE
Q 007601 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPD-------------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTT 62 (596)
Q Consensus 1 ~~~~~~l~~~~~G-----s~~g~~~~~~~~~~~-------------~fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~ 62 (596)
+++++++++.||| +..|.++.+...+|. ....+.+|+|+||++..+..+..+|+.+++.+..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTY 565 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 4789999999999 333333333322221 1234689999999999999999999999999999
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hc--cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCH
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I-r~--~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~ 139 (596)
+.+..+ +.. ..||++|+|+.||++++.+.+... +. ....++|+++...+......+.+.|+++|+.||++.
T Consensus 566 ~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 566 SPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 988887 232 359999999999987776655544 32 234568888888888888899999999999999999
Q ss_pred HHHHHHHHHHH
Q 007601 140 EELKNIWQHVV 150 (596)
Q Consensus 140 eeL~~~l~~vl 150 (596)
.+|...+....
T Consensus 640 ~~l~~~l~~~~ 650 (919)
T PRK11107 640 TRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHHhh
Confidence 99988887654
No 85
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.09 E-value=2.9e-06 Score=93.02 Aligned_cols=94 Identities=35% Similarity=0.511 Sum_probs=82.9
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 57 ~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
.++|.++..+.+++..+.... +|.+++|+.||+++|+++++.++..+.. ++++|...+.....++.++|+++|+.||
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 367778999999999998764 9999999999999999999999876665 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 007601 137 IREEELKNIWQHVVRKR 153 (596)
Q Consensus 137 l~~eeL~~~l~~vlrk~ 153 (596)
+....+........+.+
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CChHHHHHhhhhhccch
Confidence 99888888777776543
No 86
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.67 E-value=5.4e-05 Score=90.42 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=60.8
Q ss_pred ChhHHHHHHHcCC-----CCCCccccccccCCC------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 007601 1 MAALQRIVQSSGG-----SGYGSSRAADVAVPD------------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC 63 (596)
Q Consensus 1 ~~~~~~l~~~~~G-----s~~g~~~~~~~~~~~------------~fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a 63 (596)
++++++|++.||| +..|.++.+.+.+|. ....+.+||||||++.+++.++.+|+.+|++|..+
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEVEEEEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITP 719 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccccccccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEc
Confidence 5799999999999 344444433332221 12246899999999999999999999999999988
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCC
Q 007601 64 SQAAVALDILRERKGCFDVVLSDVHM 89 (596)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVLlDI~M 89 (596)
.++. . ..+|||||+|..+
T Consensus 720 ~~~~------~--~~~~Dlvl~D~~~ 737 (894)
T PRK10618 720 DERL------I--SQEYDIFLTDNPS 737 (894)
T ss_pred Cccc------c--CCCCCEEEECCCC
Confidence 7632 1 2359999999984
No 87
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.35 E-value=0.0015 Score=45.62 Aligned_cols=55 Identities=38% Similarity=0.606 Sum_probs=48.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MP 90 (596)
++|+++||++..+..+...+...++.+..+.+..++...+... .+|++++|..++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 4799999999999999999998899999999999999888654 499999998654
No 88
>PRK12704 phosphodiesterase; Provisional
Probab=97.35 E-value=0.00041 Score=78.36 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=38.2
Q ss_pred CEEEEcCCCCHH--HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 108 PVIMMSADGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 108 pVIllTa~~d~~--~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.+|++|+++... .+..+++.++.|+..||++.+++...++.-+.
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 488999998876 88899999999999999999999887776554
No 89
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.26 E-value=0.0024 Score=57.58 Aligned_cols=105 Identities=14% Similarity=0.184 Sum_probs=74.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceE-EEEeCCCCCCCHHHHHHHH-hccCCCCEEEE
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDV-VLSDVHMPDMDGFKLLEHI-GLEMDLPVIMM 112 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDL-VLlDI~MPdmdGleLl~~I-r~~~~ipVIll 112 (596)
||||||||...+..|+.+|+=.|+....+....- .....+.. .+. +++....+ ...++++.+ +..+.+||+++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999988888877765443 22233222 443 34433333 445667776 56789999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~v 149 (596)
......... ..+.+-|..|++..+|..+++++
T Consensus 76 g~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 877665111 12666789999999999998875
No 90
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.52 E-value=0.022 Score=51.64 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=80.3
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHh-ccCCCCEEEEcCCCCHHHHH
Q 007601 46 LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG-LEMDLPVIMMSADGRVSAVM 122 (596)
Q Consensus 46 ~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir-~~~~ipVIllTa~~d~~~~~ 122 (596)
...+...|+..+++|..+.+.++++..++... +++.|++|+. ++ ....++++.|+ .+..+||.+++.....+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 45677778878999999999999999999875 7999999986 21 23567888886 57899999999877554444
Q ss_pred HHHHcCCCeEEeCC-CCHHHHHHHHHHHHHhh
Q 007601 123 RGIRHGACDYLIKP-IREEELKNIWQHVVRKR 153 (596)
Q Consensus 123 eAl~~GA~DYL~KP-l~~eeL~~~l~~vlrk~ 153 (596)
..+-..+++|+... -+.+.+...+.++.++|
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~Y 115 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAARRY 115 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45556788999988 46666677777776653
No 91
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.28 E-value=0.52 Score=43.01 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=76.7
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhcc-
Q 007601 35 RVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE- 104 (596)
Q Consensus 35 rVLIV----DDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPdm--dGleLl~~Ir~~- 104 (596)
||++. |.+..=...+..+|+..||+|.. ....++.++.+.+.. +|+|.+-..++.. .--++++.+++.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 66777777888889989999874 345778888887764 9999998877642 224456666543
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 007601 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (596)
Q Consensus 105 ~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l 146 (596)
+....|++-+....+...+..++|+++|+..--+.++...-+
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 434445566555555566777999999999888777765544
No 92
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.75 E-value=0.91 Score=42.63 Aligned_cols=115 Identities=15% Similarity=0.027 Sum_probs=82.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 007601 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (596)
Q Consensus 33 girVLIV----DDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPdm--dGleLl~~Ir~ 103 (596)
+.+|++. |.+..=...+..+|+..||+|.. ....++..+.+.+.. +|+|.+-..|... .-.++++.+++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4578887 88888888999999999999874 345778888877654 9999999888742 34556677754
Q ss_pred c--CCCCEEEEcCCC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 104 E--MDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 104 ~--~~ipVIllTa~~------d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
. ++++|++ -+.. ..+...++.++|++..+...-+.+++..-+++.+
T Consensus 81 ~~~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 3555443 3332 3445567779998888887788888877666544
No 93
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.48 E-value=0.42 Score=42.94 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=64.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhccCC-CCEEEEc
Q 007601 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEMD-LPVIMMS 113 (596)
Q Consensus 40 DDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir~~~~-ipVIllT 113 (596)
|.+..=...+..+|+..||+|.. ....++.++.+.+.. ||+|.+-..+.. .+..++++.+++... -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 66677778899999999999864 335667778877664 999999887654 345667777765432 3345555
Q ss_pred CCCCHHHHHHHHHcCCCeEEeC
Q 007601 114 ADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~K 135 (596)
+..-......+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 5555444456778999766653
No 94
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.02 E-value=2.2 Score=39.81 Aligned_cols=116 Identities=10% Similarity=-0.032 Sum_probs=76.9
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc
Q 007601 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE 104 (596)
Q Consensus 34 irVLIV----DDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdG-leLl~~Ir~~ 104 (596)
.||++. |-+..-...+..+|+..||+|.. ..+.++..+...+. ++|+|.+-..|.. +.. -++++.|++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~--~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455554 55666667788888888999874 45678888888775 4999988776643 222 3345556542
Q ss_pred -CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 105 -MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 105 -~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.....|++-+..-.+...+..++|+++|+..--+..++...+.+.++
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 32233444543344456667799999999987888888777776554
No 95
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.86 E-value=0.6 Score=54.97 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=77.8
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 007601 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (596)
Q Consensus 34 irVLIVDDd~-~-----i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ 106 (596)
++|+|||++- . -.+.|...|++.+|+|..+.+..++...++... +++.|++|+.- . ..++++.++ .+.+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNP-RICGVIFDWDE--Y-SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhccc-ceeEEEEeccc--c-hHHHHHHHHHhCCC
Confidence 4788888773 2 245566677778999999999999999998543 78999999522 2 355788886 5679
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHhhcc
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRWN 155 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl-~~eeL~~~l~~vlrk~~~ 155 (596)
+||+++........+-...---+++|+..-. +.+.+...+.++.+++..
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLD 126 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 9999987654333222222223455665443 345555556666665543
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=93.26 E-value=0.71 Score=54.34 Aligned_cols=117 Identities=13% Similarity=0.169 Sum_probs=75.8
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 007601 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (596)
Q Consensus 34 irVLIVDDd~-~-----i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ 106 (596)
|+|+||+++. . -.+.|...|++.+|+|..+.+..+++..++... .++.|++|+. +. ..++++.++ .+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWD--KY-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccc-ceeEEEEecc--hh-hHHHHHHHHHhCCC
Confidence 5788887762 1 245566677788999999999999999988553 7899999952 22 245788886 5689
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCC-CCHHHHHHHHHHHHHhhc
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKP-IREEELKNIWQHVVRKRW 154 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KP-l~~eeL~~~l~~vlrk~~ 154 (596)
+||+++........+-...-.-+++|+..- .+.+.+...+.++.+++.
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~ 125 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYI 125 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHHH
Confidence 999998765433222112222344555543 245555555666665553
No 97
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=91.26 E-value=0.08 Score=56.80 Aligned_cols=76 Identities=9% Similarity=-0.051 Sum_probs=51.7
Q ss_pred cHHHHHHHhcCCCCCh---------HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee-----ee
Q 007601 246 VPKRILELMNVPGLTR---------ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI-----QA 311 (596)
Q Consensus 246 ~pK~ILe~m~v~gltr---------e~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i-----~i 311 (596)
+|+++.+.+...++.. +.+-.|..+|+..++.| |+..|+++ +.+..|+.||||||+.+ .+
T Consensus 170 vP~~V~~YI~~~~LY~e~~l~~~~~~~~~~HSl~VA~~A~~L---A~~~g~d~---~~a~~AGLLHDIGK~~~~~~~~~~ 243 (342)
T PRK07152 170 LDPKVNDYINENFLYLEDILKSFLDEYRYKHCLRVAQLAAEL---AKKNNLDP---KKAYYAGLYHDITKEWDEEKHRKF 243 (342)
T ss_pred CCHHHHHHHHHcCccccHHHHHHhhHHHHHHHHHHHHHHHHH---HHHhCcCH---HHHHHHHHHHHhhccCCHHHHHHH
Confidence 5556655554444443 34778999999999999 99999876 66777899999999864 23
Q ss_pred eccCCCCChHHHHHHHH
Q 007601 312 LAASGQIPPQTLAALHA 328 (596)
Q Consensus 312 L~KpGkL~~ee~~imk~ 328 (596)
+.+. .++.++...+..
T Consensus 244 ~~~~-~~~~~~~~~~~~ 259 (342)
T PRK07152 244 LKKY-LKDVKNLPWYVL 259 (342)
T ss_pred HHhc-CCchhhcchHHH
Confidence 3332 345555555444
No 98
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=90.83 E-value=0.18 Score=48.59 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCc--cccccccccccccCcCccee
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGITN--SFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls~--~~~e~i~~AspLHDiGKi~i 309 (596)
+.+-.|..||..++..| |..++.+. ...+.+..|+.||||||+.+
T Consensus 12 ~~~~~Hs~~Va~~A~~i---a~~~~~~~~~~d~~~l~~aaLLHDIGK~~~ 58 (164)
T TIGR00295 12 ESVRRHCLAVARVAMEL---AENIRKKGHEVDMDLVLKGALLHDIGRART 58 (164)
T ss_pred ccHHHHHHHHHHHHHHH---HHHhccccccCCHHHHHHHHHHhcCCcccC
Confidence 45889999999999999 88877432 35667888999999999854
No 99
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.76 E-value=3.8 Score=42.35 Aligned_cols=111 Identities=21% Similarity=0.227 Sum_probs=75.5
Q ss_pred ccEEEEEeCCHHHH-------HHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCH
Q 007601 33 GLRVLVVDDDITCL-------RILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP---------DMDG 94 (596)
Q Consensus 33 girVLIVDDd~~i~-------~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MP---------dmdG 94 (596)
.+|+=|+.|+.... +..+.+++ .+|.|. +..|...|.++.. - .++.| || +..-
T Consensus 93 ~iKlEVi~d~~~Llpd~~~tv~aa~~L~~-~Gf~vlpyc~dd~~~ar~l~~-~--G~~~v-----mPlg~pIGsg~Gi~~ 163 (248)
T cd04728 93 WIKLEVIGDDKTLLPDPIETLKAAEILVK-EGFTVLPYCTDDPVLAKRLED-A--GCAAV-----MPLGSPIGSGQGLLN 163 (248)
T ss_pred eEEEEEecCccccccCHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHH-c--CCCEe-----CCCCcCCCCCCCCCC
Confidence 47777777665333 33333333 388876 4555666655544 3 37777 66 1111
Q ss_pred HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHHh
Q 007601 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVRK 152 (596)
Q Consensus 95 leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP-----l~~eeL~~~l~~vlrk 152 (596)
.++++.|++..++|||+=.+-...+.+.++++.||+..+.-. -++..+...+..++..
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 678888876678999998899999999999999999987643 4567777777777654
No 100
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=89.78 E-value=0.19 Score=40.89 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 007601 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 263 ~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
.+..|..|+..++..+ |+..|++.. .+..|+.||||||+..
T Consensus 4 ~~~~H~~~v~~~a~~l---a~~~~~~~~---~l~~AalLHDiG~~~~ 44 (80)
T TIGR00277 4 NVLQHSLEVAKLAEAL---ARELGLDVE---LARRGALLHDIGKPIT 44 (80)
T ss_pred hHHHHHHHHHHHHHHH---HHHcCCCHH---HHHHHHHHHccCCccc
Confidence 4678999999999999 888887654 4778999999999854
No 101
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=89.63 E-value=4.8 Score=43.56 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=44.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 007601 35 RVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~ 103 (596)
+|++-++|+.+.+.++++.+++| |.|....+.. ..+++.. =.++-+.|=+.+--+++..|+.
T Consensus 32 ~~~~~~~d~~~~~~~~~v~~~~gg~f~~~~~~~~~---~~~~~~~----g~vvhltmyg~~~~~~~~~i~~ 95 (339)
T PRK12703 32 SILVDERDETLENTIKKVVDNFGGSFEIKTGIEWK---SEFKKFH----GIRVHLTMYGRPIEDVIDEIRE 95 (339)
T ss_pred eeEecCCcHhHHHHHHHHHHhcCCCeEEEeccCHH---HHHHhcC----CEEEEEecCCCchHHHHHHHhc
Confidence 58899999999999999999985 5555544444 4444432 2566677877777778888874
No 102
>PRK00208 thiG thiazole synthase; Reviewed
Probab=89.51 E-value=5.2 Score=41.45 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=76.0
Q ss_pred CccEEEEEeCCHH-------HHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC--C-------CC
Q 007601 32 AGLRVLVVDDDIT-------CLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP--D-------MD 93 (596)
Q Consensus 32 ~girVLIVDDd~~-------i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MP--d-------md 93 (596)
..+|+=|+.|+.. ..+..+.+++ .+|.|. +..|..+|.++.. - .+|.| || . ..
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~-~Gf~vlpyc~~d~~~ak~l~~-~--G~~~v-----mPlg~pIGsg~gi~ 162 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVK-EGFVVLPYCTDDPVLAKRLEE-A--GCAAV-----MPLGAPIGSGLGLL 162 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHH-c--CCCEe-----CCCCcCCCCCCCCC
Confidence 3577777776542 2333333333 388876 4555666655544 3 37877 66 1 11
Q ss_pred HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHHh
Q 007601 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVRK 152 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP-----l~~eeL~~~l~~vlrk 152 (596)
-.++++.|++..++|||+=.+-...+.+.++++.|++..+.-. -++..+...+..++..
T Consensus 163 ~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 163 NPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred CHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 1677888876678999999999999999999999999987643 4577777777777654
No 103
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=89.24 E-value=0.12 Score=45.04 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 007601 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 265 aSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
..|..+|..+++.+ +...++ +...+.+..|+-||||||+..
T Consensus 2 ~~Hs~~V~~~a~~l---~~~~~~-~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERL---ADRLGL-EEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHH---HHHHTH-HHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHH---HHHcCC-chhHHHHHHHHHHHhcCCCCC
Confidence 57999999999999 777666 777888999999999999975
No 104
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.77 E-value=7.2 Score=34.57 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCC-CCC-CHHHHHHHHhc-cCCCCEEEEcC
Q 007601 41 DDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHM-PDM-DGFKLLEHIGL-EMDLPVIMMSA 114 (596)
Q Consensus 41 Dd~~i~~~L~~lL~~~~y~V~~a---~sg~eALe~L~e~~~~pDLVLlDI~M-Pdm-dGleLl~~Ir~-~~~ipVIllTa 114 (596)
-++.-...+..+|++.+++|... .+.++..+.+.+.. ||+|.+...+ +.. ...++++.++. .++++||+ -+
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~-GG 88 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV-GG 88 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE-EE
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE-EC
Confidence 44667788999999999999765 33566677777654 9999999854 333 34667777764 45555555 44
Q ss_pred CCCHHHHHHHHH--cCCCeEEe
Q 007601 115 DGRVSAVMRGIR--HGACDYLI 134 (596)
Q Consensus 115 ~~d~~~~~eAl~--~GA~DYL~ 134 (596)
..-.....+.++ .|++..+.
T Consensus 89 ~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 89 PHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp SSSGHHHHHHHHHHHTSEEEEE
T ss_pred CchhcChHHHhccCcCcceecC
Confidence 333333344554 45554443
No 105
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=88.41 E-value=1.4 Score=46.55 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=54.6
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEE-cCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM-SADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIll-Ta~~d~~~~~eAl~~GA~DYL~KP 136 (596)
.++..+.+..++-... ..-.+|++|..+-. .++... .-+...+|++ ....+.+....+++.|+.||+.+|
T Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P 72 (322)
T TIGR03815 2 VELDVAPDPEAARRAW----ARAPLVLVDADMAE----ACAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLP 72 (322)
T ss_pred CceEEccCchhhhhcc----ccCCeEEECchhhh----HHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCC
Confidence 3455666655543322 23678999864421 111121 1122335544 446678889999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 007601 137 IREEELKNIWQHVV 150 (596)
Q Consensus 137 l~~eeL~~~l~~vl 150 (596)
++.++|...+.++.
T Consensus 73 ~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 73 EAEGWLVELLADLD 86 (322)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999887763
No 106
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=87.24 E-value=16 Score=34.38 Aligned_cols=110 Identities=12% Similarity=0.014 Sum_probs=73.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc-CCCCEEEEc
Q 007601 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-MDLPVIMMS 113 (596)
Q Consensus 40 DDd~~i~~~L~~lL~~~~y~V~---~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-md-GleLl~~Ir~~-~~ipVIllT 113 (596)
|-+..=...+..+|+..+|+|. ...+.++.++...++ ++|+|-+-..|.. +. --++.+.+++. ..-++|++-
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~--~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET--KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEec
Confidence 4445556778889999999987 456788888888776 4999999887753 32 23455566532 222445565
Q ss_pred CC-----CCHH-HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 114 AD-----GRVS-AVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 114 a~-----~d~~-~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
+. .+.. ...++.++|++..+...-..+++...+++.++
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 53 2222 23456689988888877788888887776553
No 107
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.80 E-value=5.2 Score=34.95 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=61.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~a---~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
+||||-..+.....++..+++.++++... .........+...-...|+||+=...-..+-...+++..+..++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999988877 222222222333223479998877777777777777776678899998
Q ss_pred EcCCCCHHHHHHHH
Q 007601 112 MSADGRVSAVMRGI 125 (596)
Q Consensus 112 lTa~~d~~~~~eAl 125 (596)
.-+.+ .....+++
T Consensus 81 ~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 81 SRSRG-VSSLERAL 93 (97)
T ss_pred ECCCC-HHHHHHHH
Confidence 75433 33344443
No 108
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.57 E-value=13 Score=37.19 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=57.0
Q ss_pred HHHHHh-CCCeE-EEECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCCEEEEcCCCCHHH
Q 007601 50 EQMLRR-CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSA 120 (596)
Q Consensus 50 ~~lL~~-~~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~-------MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~ 120 (596)
.+.+++ .+..+ ..+.+.+++..... . .+|+|.+... ......++++++++..-++|||...+-.+.+.
T Consensus 111 i~~~~~~~~i~vi~~v~t~ee~~~a~~-~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~ 187 (221)
T PRK01130 111 VKRIKEYPGQLLMADCSTLEEGLAAQK-L--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQ 187 (221)
T ss_pred HHHHHhCCCCeEEEeCCCHHHHHHHHH-c--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 333344 44444 35677788765443 2 3888765321 12223578888887666899999999888999
Q ss_pred HHHHHHcCCCeEEeCC
Q 007601 121 VMRGIRHGACDYLIKP 136 (596)
Q Consensus 121 ~~eAl~~GA~DYL~KP 136 (596)
+.++++.||+..+.=.
T Consensus 188 ~~~~l~~GadgV~iGs 203 (221)
T PRK01130 188 AKKALELGAHAVVVGG 203 (221)
T ss_pred HHHHHHCCCCEEEEch
Confidence 9999999999876643
No 109
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.55 E-value=18 Score=35.26 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=50.2
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHhccC-CCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPdm--------dGleLl~~Ir~~~-~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
.+.+..++.+.... .+|.|.+.-..|.. .|++.++++++.. .+||+..-+- +.+.+.++++.||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45566677666542 48999987655532 3688888886543 4899888776 5678889999999998
Q ss_pred Ee
Q 007601 133 LI 134 (596)
Q Consensus 133 L~ 134 (596)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 75
No 110
>PRK15320 transcriptional activator SprB; Provisional
Probab=82.78 E-value=3.9 Score=41.21 Aligned_cols=167 Identities=16% Similarity=0.120 Sum_probs=94.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEEE
Q 007601 35 RVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~--~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVIl 111 (596)
.|+|-.|.-.+.-.++.+++++ +..|.+|.+-...+..++.. ||.+++=.--|.. -+-+-..++ .-++-||++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~e-h~~lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHE-HVYLFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchh-HHHHHHHHHHHcCCCceEE
Confidence 5778888877778888888875 55788899988888888765 4543332222322 222233333 346778888
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCC-----CCH----HHHHHHHHHHHHhhccccc--cc--cccCCccc----------
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKP-----IRE----EELKNIWQHVVRKRWNENK--EH--ENSGSLEE---------- 168 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KP-----l~~----eeL~~~l~~vlrk~~~~~~--~~--~~~~~le~---------- 168 (596)
++..--.....-.--+|..||++|. +++ ..|-++|-+...+-..... .. ......++
T Consensus 79 v~d~l~~~dr~vl~~~g~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T PRK15320 79 VADRLYYIDRCVLQYFGVMDYVLKDELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQYAW 158 (251)
T ss_pred EecceeehhhhhhhhhcchhHHHHHHHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhccceee
Confidence 8765444333333357999998873 011 1122333333221110000 00 00000000
Q ss_pred -ccccCCChhhHHHHHHhhcCCcceeehhhhccccccc
Q 007601 169 -TDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEE 205 (596)
Q Consensus 169 -~~~~~ls~~Eie~l~~~~eg~~~~~~a~~~~is~kt~ 205 (596)
.....++.+|++++..+.+|.+...++....++.+++
T Consensus 159 ~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~KTV 196 (251)
T PRK15320 159 WNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTV 196 (251)
T ss_pred ecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchhhH
Confidence 1124678899999999999988877777666655544
No 111
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.90 E-value=1.3 Score=50.37 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=48.9
Q ss_pred HHHHHHhccccccHHHHHHHhcCCCCChH---HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 234 VSAVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 234 ~~av~~Lgl~ka~pK~ILe~m~v~gltre---~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
-+++..+|+..-. .+++.+++...++.+ ++-.|..+|+.++..| |..+|++.+. +..|+.||||||+
T Consensus 298 ~~~~~~~~~~~~~-~~~~~~l~~l~~r~~~~~~~l~Hs~~VA~lA~~L---A~~lgld~~~---a~~AGLLHDIGK~ 367 (514)
T TIGR03319 298 EQAAFDLGVHGLH-PELIKLLGRLKFRTSYGQNVLQHSIEVAHLAGIM---AAELGEDVKL---AKRAGLLHDIGKA 367 (514)
T ss_pred HHHHHHhCCCcCC-HHHHHHHHHhhccccCCccHHHHHHHHHHHHHHH---HHHhCcCHHH---HHHHHHHHhcCcc
Confidence 4567777776543 345555555544443 3678999999999999 9999987764 4568899999997
No 112
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.89 E-value=19 Score=35.66 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=67.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 007601 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (596)
Q Consensus 33 girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a---~sg~eALe~L~e~~~~pDLVLlDI~MPdm--dGleLl~~Ir~ 103 (596)
+.||++. |.+..=...+..+|+..||+|... ...++.++.+.+.. ||+|-+-..|... +..++++.+++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578887 777777888999999999998743 35677888887764 9999999988642 34556677764
Q ss_pred cC---CCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 104 EM---DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 104 ~~---~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.. +++|++=-..-..+ -+-..||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 32 55655533322322 3446799888653
No 113
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=80.21 E-value=34 Score=35.83 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=75.0
Q ss_pred CccEEEEEeCC-------HHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCC--H---HHH
Q 007601 32 AGLRVLVVDDD-------ITCLRILEQMLRRCLYNVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMD--G---FKL 97 (596)
Q Consensus 32 ~girVLIVDDd-------~~i~~~L~~lL~~~~y~V~~a~s--g~eALe~L~e~~~~pDLVLlDI~MPdmd--G---leL 97 (596)
..+|+=|+-|+ ....+..+.+. +.||.|..+.+ ..-|.++ .+-. .. .++-+--|=.+ | -..
T Consensus 106 ~wIKLEVi~D~~~LlPD~~etl~Aae~Lv-~eGF~VlPY~~~D~v~a~rL-ed~G--c~-aVMPlgsPIGSg~Gl~n~~~ 180 (267)
T CHL00162 106 NFVKLEVISDPKYLLPDPIGTLKAAEFLV-KKGFTVLPYINADPMLAKHL-EDIG--CA-TVMPLGSPIGSGQGLQNLLN 180 (267)
T ss_pred CeEEEEEeCCCcccCCChHHHHHHHHHHH-HCCCEEeecCCCCHHHHHHH-HHcC--Ce-EEeeccCcccCCCCCCCHHH
Confidence 35666666433 34444455545 45999975443 4444333 3322 22 22223223222 3 345
Q ss_pred HHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHh
Q 007601 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (596)
Q Consensus 98 l~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~-----KPl~~eeL~~~l~~vlrk 152 (596)
++.|++++++|||+=.+-...+.+.++++.|+++.+. |--++.++..+++.++..
T Consensus 181 l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 181 LQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 6777778899999999999999999999999999754 556889999999888864
No 114
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=79.80 E-value=25 Score=35.07 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=52.2
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~-------MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
..+.+.+++...... .+|+|.+... ......+++++.+++..++||+...+-.+.+.+.++++.||+..+
T Consensus 128 v~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 128 ADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred EECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 456777887665543 4888754321 112235788888876558999999998899999999999999887
Q ss_pred eC
Q 007601 134 IK 135 (596)
Q Consensus 134 ~K 135 (596)
.=
T Consensus 205 vG 206 (219)
T cd04729 205 VG 206 (219)
T ss_pred Ec
Confidence 64
No 115
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=78.91 E-value=11 Score=35.16 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----HHHHHHhcc
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF-----KLLEHIGLE 104 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGl-----eLl~~Ir~~ 104 (596)
..+|-+.+.||-+.........+|...+.+|+.-....+ +-. ..+|.+|+.+-.+-.+-. .+.+.+...
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mt 81 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----LPP--AHYDMMLLGVAVTFRENLTMQHERLAKALSMT 81 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----cCh--hhhceeeecccccccCCchHHHHHHHHHHhhh
Confidence 346789999999999999999999999999875433322 211 249999999876643333 333333211
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHH
Q 007601 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (596)
Q Consensus 105 ~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~ 145 (596)
+ -||+--.......+.+...-|+.+.|+||++..+|.-.
T Consensus 82 -d-~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 82 -D-FVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred -c-ceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 1 24443333445556777789999999999999888763
No 116
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=78.67 E-value=1.6 Score=44.41 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcce
Q 007601 260 TRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD 308 (596)
Q Consensus 260 tre~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~ 308 (596)
.-+++-+|+.||...+..| |.+.|.+ .+.+..|+-||||||..
T Consensus 33 ~~~~~l~H~~~Va~lA~~I---a~~~g~D---~~l~~~aaLLHDIg~~~ 75 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRI---AEEEGVD---PDLALRAALLHDIGKAI 75 (222)
T ss_pred ccchHHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHHhhcccc
Confidence 3457999999999999999 8888875 34667788999999985
No 117
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=78.64 E-value=22 Score=36.92 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=68.9
Q ss_pred HHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCCEEEEcCCCCHHHHHH
Q 007601 48 ILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (596)
Q Consensus 48 ~L~~lL~~~~y--~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir--~~~~ipVIllTa~~d~~~~~e 123 (596)
.++..|+.-.. .+........+.+++... .||.|++|.+=-..|--++...++ ....++.++.....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 45666665322 222333334566666654 499999999776666555655554 335677788888899999999
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHH
Q 007601 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (596)
Q Consensus 124 Al~~GA~DYL~KPl-~~eeL~~~l~~v 149 (596)
+++.||.+.+.--+ +.++.+.+++.+
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999988554 677777776654
No 118
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=77.22 E-value=29 Score=35.82 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=67.6
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCCEEEEcCCCCHHHHHHH
Q 007601 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (596)
Q Consensus 49 L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir--~~~~ipVIllTa~~d~~~~~eA 124 (596)
++..|+.-. +.+..........+++... .||.|++|.+=-.+|--++...++ ....++.++.....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 445555422 2233333444666766654 499999999876666555555554 3356777888888999999999
Q ss_pred HHcCCCeEEeCCC-CHHHHHHHHHHH
Q 007601 125 IRHGACDYLIKPI-REEELKNIWQHV 149 (596)
Q Consensus 125 l~~GA~DYL~KPl-~~eeL~~~l~~v 149 (596)
++.||.+.+.--+ +.++.+.+++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999988554 677777776654
No 119
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=76.91 E-value=69 Score=30.66 Aligned_cols=117 Identities=15% Similarity=-0.015 Sum_probs=75.8
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHh
Q 007601 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG 102 (596)
Q Consensus 32 ~girVLIV----DDd~~i~~~L~~lL~~~~y~V~---~a~sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir 102 (596)
...||+|. |-+..-.+.+.+.|+..+|+|. ...+.+|+....-++ +.|+|.+-..-.+ ...-++.+.+|
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEeccchHHHHHHHHHHHHH
Confidence 45667764 7888888999999999999986 467888988877654 4888877643222 12333445555
Q ss_pred ccCCCCEE-EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 103 LEMDLPVI-MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 103 ~~~~ipVI-llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
+..--.|+ +.-+--..+...+..++|++.++.--....+...-+...+
T Consensus 89 e~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 89 EAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 43322343 3444444444555668999999887677776655554443
No 120
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=75.15 E-value=29 Score=34.30 Aligned_cols=94 Identities=7% Similarity=0.112 Sum_probs=65.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
-+++|+.+++..++.++++++.+| |+|....+.+++++-++.....|.|+..+....+ .++-++..-.. .-|+++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LI 108 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLI 108 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEE
Confidence 368999999999999999999884 7789999999999998743335889999988866 44444332112 456666
Q ss_pred EcC-CCCHHHHHHHHHcCCCeEEeC
Q 007601 112 MSA-DGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 112 lTa-~~d~~~~~eAl~~GA~DYL~K 135 (596)
+-+ ..-. .+.+ ...||.+-
T Consensus 109 vvGg~gvp---~evy--e~aDynlg 128 (176)
T PRK03958 109 VVGAEKVP---REVY--ELADWNVA 128 (176)
T ss_pred EEcCCCCC---HHHH--hhCCEEec
Confidence 555 2222 2333 34567663
No 121
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=75.12 E-value=55 Score=30.65 Aligned_cols=105 Identities=16% Similarity=0.060 Sum_probs=69.2
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc--CCCCEEEE
Q 007601 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE--MDLPVIMM 112 (596)
Q Consensus 40 DDd~~i~~~L~~lL~~~~y~V~---~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdG-leLl~~Ir~~--~~ipVIll 112 (596)
|-+..=...+..+|+..+|+|. ...+.++.++...++. +|+|.+-..|.. +.. -++.+.+++. .+++|++
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv- 86 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV- 86 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE-
Confidence 3445556778889999999986 4557788888887764 999999887763 333 3456666543 2555443
Q ss_pred cCC-----CC-HHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 007601 113 SAD-----GR-VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (596)
Q Consensus 113 Ta~-----~d-~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~ 147 (596)
-+- .+ .+...+..++|++..+...-+++++...++
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 333 12 223445668999988887777777765543
No 122
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=74.77 E-value=35 Score=34.42 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=67.4
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 007601 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (596)
Q Consensus 32 ~girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a~---sg~eALe~L~e~~~~pDLVLlDI~MPd-md-GleLl~~Ir 102 (596)
..-+|++. |.+..=...+..+|+..||+|.... ..++.++.+.+.+ ||+|.+-..|+. +. --++++.|+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 44578887 7778888889999999999987533 4777788887764 999999998863 32 345667776
Q ss_pred cc-CCCCEEEEcCCCCHHHHHH---HHHcCCCeEEeC
Q 007601 103 LE-MDLPVIMMSADGRVSAVMR---GIRHGACDYLIK 135 (596)
Q Consensus 103 ~~-~~ipVIllTa~~d~~~~~e---Al~~GA~DYL~K 135 (596)
+. .+++|++=-+--+.+...+ +-..||+.|-.-
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 43 4556555333223333222 123688777653
No 123
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=74.61 E-value=2.4 Score=43.36 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc----CCCccccccccccccccCcCcceeeeeccCCCCChHHHHHHHH
Q 007601 263 NVASHLQKFRLYLKRLNGVSQQG----GITNSFCAPIETNVKLGSLGRFDIQALAASGQIPPQTLAALHA 328 (596)
Q Consensus 263 ~taSHLqRvr~y~k~L~~~A~~~----Gls~~~~e~i~~AspLHDiGKi~i~iL~KpGkL~~ee~~imk~ 328 (596)
.+-.|+.||..+...+ +++- +.+. +.+..|+-|||||+... ..++++++.|++.....
T Consensus 55 ~~~~Hs~RV~~~a~~i---a~~e~~~~~~D~---evl~lAALLHDIG~~~~--~~~~~~~~fe~~ga~~A 116 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAI---ARDQFPEWDLSD---ETWFLTCLLHDIGTTDE--NMTATKMSFEFYGGILA 116 (228)
T ss_pred hhhHHHHHHHHHHHHH---HHHhccccCCCH---HHHHHHHHHHhhccccc--cCCcccCCHHHHHHHHH
Confidence 5779999999999999 6532 4444 56788999999998753 23667888888855544
No 124
>PRK12705 hypothetical protein; Provisional
Probab=74.56 E-value=2.9 Score=47.55 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=44.4
Q ss_pred HHHHhccccccHHHHHHHhcCCCCChH---HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 236 AVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 236 av~~Lgl~ka~pK~ILe~m~v~gltre---~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
++..+|+..-.| .++..++....+.+ ++-.|..++..++..| |..+|++.+. +..|+.||||||.
T Consensus 294 a~~~lgi~~~~~-~li~~Lg~L~~R~sygqnvl~HSl~VA~lA~~L---A~~lGld~d~---a~~AGLLHDIGK~ 361 (508)
T PRK12705 294 VLEELGIFDLKP-GLVRLLGRLYFRTSYGQNVLSHSLEVAHLAGII---AAEIGLDPAL---AKRAGLLHDIGKS 361 (508)
T ss_pred HHHHhccccccH-HHHHHHHHHhhcccCCchHHHHHHHHHHHHHHH---HHHcCcCHHH---HHHHHHHHHcCCc
Confidence 455566554333 23334443333322 4778999999999999 9999998754 4568899999996
No 125
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=74.48 E-value=37 Score=35.57 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=67.6
Q ss_pred HHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCCEEEEcCCCCHHHHHH
Q 007601 48 ILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (596)
Q Consensus 48 ~L~~lL~~~~y--~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir--~~~~ipVIllTa~~d~~~~~e 123 (596)
.+++.|+.-.. ..........+.+++... .||.|++|.+=-..|--++...++ ....+..++.....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 35666655322 222333334566666654 499999999776666555555554 234566677778889999999
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHH
Q 007601 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (596)
Q Consensus 124 Al~~GA~DYL~KPl-~~eeL~~~l~~v 149 (596)
+++.||.+.+.--+ +.++.+.+++.+
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999998665 677777766654
No 126
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=74.17 E-value=60 Score=28.40 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHHh
Q 007601 116 GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVRK 152 (596)
Q Consensus 116 ~d~~~~~eAl~~GA~DYL~KPl--~~eeL~~~l~~vlrk 152 (596)
...+.+.++++.|..=|+.||+ +.+++.++++.+-+.
T Consensus 74 ~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 74 SHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp GHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 3467788899999999999996 889998888776543
No 127
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=73.41 E-value=33 Score=35.11 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=42.0
Q ss_pred CHHHHHHHHhccCCCCEEEEcCCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 93 DGFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 93 dGleLl~~Ir~~~~ipVIllTa~~d------~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
.++++++++|...++|+++|+-... .....++.++|+++.+.-.+..+++...++.+.
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 3566777777555889988877553 555777789999999997777777766665543
No 128
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=72.69 E-value=42 Score=40.00 Aligned_cols=117 Identities=10% Similarity=-0.047 Sum_probs=76.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 007601 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (596)
Q Consensus 33 girVLIV----DDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPdm--dGleLl~~Ir~ 103 (596)
..+|++. |.+..-...+..+|+..||+|.. ..+.+++.+...+. ++|+|.+-..+... ..-++++.|++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~--~a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEN--DVHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHc--CCCEEEEeccchhhHHHHHHHHHHHHh
Confidence 3466654 44455556677778888999863 34677888888765 48988876655432 24466777765
Q ss_pred cCCCCE-EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 104 EMDLPV-IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 104 ~~~ipV-IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
...-.| |++.+..-.+......+.|+++|+..-.+..++...+.+.++
T Consensus 660 ~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 660 LGREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred cCCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 421123 445554233334455689999999988888887777776664
No 129
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=70.20 E-value=59 Score=33.53 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=67.4
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCCEEEEcCCCCHHHHHHH
Q 007601 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (596)
Q Consensus 49 L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~--~~~ipVIllTa~~d~~~~~eA 124 (596)
++..|+.-. +.+..........+.+... .+|.|++|.+=...|--++...++. .....+++.....+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 444555422 2333344445666766654 4999999997665676666666653 334577888888888899999
Q ss_pred HHcCCCeEEeCC-CCHHHHHHHHHHH
Q 007601 125 IRHGACDYLIKP-IREEELKNIWQHV 149 (596)
Q Consensus 125 l~~GA~DYL~KP-l~~eeL~~~l~~v 149 (596)
++.|+++.+.-- -+.+++.++++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 999999986643 5788887777654
No 130
>PRK00106 hypothetical protein; Provisional
Probab=70.19 E-value=6 Score=45.32 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=49.3
Q ss_pred HHHHHHhccccccHHHHHHHhcCCCCChH---HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 234 VSAVNQLGIDKAVPKRILELMNVPGLTRE---NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 234 ~~av~~Lgl~ka~pK~ILe~m~v~gltre---~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
-+++..+|+..-.|. ++.+++-.-++.+ ++-.|...|+..+..| |..+|++ .+.+..|..||||||+
T Consensus 319 e~a~~~lg~~~~~~e-~~~~lg~l~~r~sy~qnl~~HSv~VA~lA~~l---A~~lgld---~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 319 EAAAYEIGAPNLHPD-LIKIMGRLQFRTSYGQNVLRHSVEVGKLAGIL---AGELGEN---VALARRAGFLHDMGKA 388 (535)
T ss_pred HHHHHHcCCCCCCHH-HHHHHHHHhhhccCCCcHHHHHHHHHHHHHHH---HHHhCCC---HHHHHHHHHHHhccCc
Confidence 456666776654443 4445555555544 4899999999999999 9999975 4667778899999998
No 131
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.43 E-value=42 Score=35.65 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=45.6
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
....+.+.+|+.+.+.. .+|+|++| +|.-.+--+.++.++....-..|..|+--+.+.+.+-.+.|++-+
T Consensus 202 IeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 44578999999999864 48999999 343212222233333222223566788888888888778998654
No 132
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=68.74 E-value=57 Score=29.43 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cCCCCEEEEcCCCCHH
Q 007601 44 TCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPVIMMSADGRVS 119 (596)
Q Consensus 44 ~i~~~L~~lL~~~~y~V~~--a~sg~eALe~L~e~~~~pDLVLlDI~MPdm-dGleLl~~Ir~-~~~ipVIllTa~~d~~ 119 (596)
.-...+..+|++.++++.. ....++.++.+... .+||+|.+.+.-... ...++++.+|+ .++++||+=-.+....
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~ 81 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFF 81 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhC
Confidence 3456678888887877653 33455666666542 259999999855543 45677888874 4666776643333322
Q ss_pred HHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 120 AVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 120 ~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
. ...+.....||+.+---..-+...++++.
T Consensus 82 p-~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 82 P-EEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred H-HHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 2 22255556789988755555666666543
No 133
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=68.69 E-value=36 Score=35.92 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHH---HHHHHHHh----C--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 007601 36 VLVVDDDITCLR---ILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (596)
Q Consensus 36 VLIVDDd~~i~~---~L~~lL~~----~--~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ 106 (596)
|||=|+|-...- .++..++. . ......+.+.++|.+.+.. .+|+|++| +|+-.+=.+.++.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 666666544432 23333332 1 2234578899999998864 48999999 4543333444555542222
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
-.+|-.++--+.+.+.+-.+.|++-+
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 23566788888888877778887753
No 134
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=67.42 E-value=2.2 Score=40.49 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHh----hhhhhcCCCccccccccccccccCcCccee
Q 007601 266 SHLQKFRLYLKRLN----GVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 266 SHLqRvr~y~k~L~----~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
.|+.++..+.+.+- ..+...|. ++.+.+..++.||||||+..
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~~~--~~~~~~~~~~~lHDiGK~~~ 48 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLIGK--LLRELLDLLALLHDIGKINP 48 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHhh--HHHHHHHHHHHHccCccCCH
Confidence 57777776666531 11344443 45677888899999999975
No 135
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.00 E-value=96 Score=32.78 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=60.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-c-CCC
Q 007601 36 VLVVDDDITCLRILEQMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E-MDL 107 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~------~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~-~~i 107 (596)
|||-|++-... .+...++.. ......+.+.+++.+.+.. .+|+|++|-..|+ +=-+.++.++. . ..-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 78888886555 566666542 1234578999999999864 3899999965443 12233333432 1 122
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
..|..|+--+.+.+.+..+.|+|-+-
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 35667877788888888899987543
No 136
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=66.48 E-value=75 Score=31.72 Aligned_cols=68 Identities=15% Similarity=0.295 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 65 QAAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVLlDI~MPdm-dG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
+..+..+.+.+. .++ +++.|+.-.++ .| +++++++++..++|||.=.+-.+.+.+.++++.||++.+.
T Consensus 146 ~~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 334455555544 366 77788864322 22 7888888766789999988899999999999999999876
No 137
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.45 E-value=25 Score=39.38 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=56.6
Q ss_pred CCccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCC-CCCHHHHHHHH-hc
Q 007601 31 PAGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMP-DMDGFKLLEHI-GL 103 (596)
Q Consensus 31 p~girVLIVDDd~~i---~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI--~MP-dmdGleLl~~I-r~ 103 (596)
..+.+|++++-|+-- ...++.+.+..+..+..+.+..++.+.++. ..+|+||+|. .++ +.+-++-+..+ +.
T Consensus 250 ~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 250 HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred hcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHh
Confidence 346789999988722 233444444445666666666677777764 3599999996 232 22233333333 21
Q ss_pred ----cCCCCEEEEcCCCCHHHHHHHHH----cCCCeE
Q 007601 104 ----EMDLPVIMMSADGRVSAVMRGIR----HGACDY 132 (596)
Q Consensus 104 ----~~~ipVIllTa~~d~~~~~eAl~----~GA~DY 132 (596)
.+.-.++++++....+...++++ .|+++.
T Consensus 328 ~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~gl 364 (432)
T PRK12724 328 FGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRI 364 (432)
T ss_pred hcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEE
Confidence 12235667777777655555542 455554
No 138
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=65.57 E-value=2.7 Score=36.43 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 007601 264 VASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 264 taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
...|..++..++..+ +.....++...+.+..|+-|||+||...
T Consensus 3 ~~~Hs~~v~~~~~~~---~~~~~~~~~~~~~l~~aaLlHDig~~~~ 45 (145)
T cd00077 3 RFEHSLRVAQLARRL---AEELGLSEEDIELLRLAALLHDIGKPGT 45 (145)
T ss_pred hHHHHHHHHHHHHHH---HHHhCcCHHHHHHHHHHHHHHhcCCccC
Confidence 457888888888888 6665555566677888999999999864
No 139
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=65.42 E-value=25 Score=34.52 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=45.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHh
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYN---VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIG 102 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~---V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdG-leLl~~Ir 102 (596)
-+|..||-++.....+++-++..+.. .....+...++..+......+|+|++|-=-..... .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH
Confidence 47999999999999999999987532 34567877787766544456999999942222233 55777774
No 140
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=65.14 E-value=96 Score=30.85 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=50.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-------mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
.+.+.+++..+. +. ..|.|+++-.-++ ...+++++++++..++||++.-+-...+.+.+++..||+....
T Consensus 108 ~v~~~~~~~~~~-~~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 108 TVTSVEEARKAE-AA--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred eCCCHHHHHHHH-Hc--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 445666655443 33 3788887653111 2467788888766679999988888878899999999998766
Q ss_pred C
Q 007601 135 K 135 (596)
Q Consensus 135 K 135 (596)
-
T Consensus 185 g 185 (236)
T cd04730 185 G 185 (236)
T ss_pred c
Confidence 4
No 141
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=65.09 E-value=2.8 Score=39.88 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
+..-.|..+|+..++.| |+..+.+.+ ....|..||||||+
T Consensus 7 ~~r~~Hsl~Va~~a~~l---A~~~~~d~e---~a~~AGLLHDIGk~ 46 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQL---AEANKLDSK---KAEIAGAYHDLAKF 46 (158)
T ss_pred hHHHHHHHHHHHHHHHH---HHHhCcCHH---HHHHHHHHHHHhcc
Confidence 45678999999999999 888886654 46678889999995
No 142
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=65.00 E-value=25 Score=36.71 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=69.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEc
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllT 113 (596)
.|-+.=-++.....+..+|....|.+....++++.++.++++++.+|.+|+..... -..+..++.+ .--+|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcCccccEEEEe
Confidence 35556667888889999998889999999999999999998888899999986543 3567777753 4467999886
Q ss_pred CCCCHHHHHHHHHcCCCeE-----EeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDY-----LIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DY-----L~KPl~~eeL~~~l~~vlrk~ 153 (596)
......... ..|..+| -++.-..++|-..+.+++.+.
T Consensus 79 ~~~s~~~~~---~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 79 SSESASTTS---ESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp ---S--TTS-----SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred cCcccccCC---CCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 633211110 2344444 444445566666666666543
No 143
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=64.75 E-value=55 Score=31.04 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=50.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPd--------mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
.+.+..++.+.... .+|.|+++-..|. ..|++.++++++...+||++..+-. .+.+.++.+.|++.+.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEE
Confidence 44566666665542 4899998765442 3467888888766778999887764 6778888999999875
Q ss_pred eC
Q 007601 134 IK 135 (596)
Q Consensus 134 ~K 135 (596)
.=
T Consensus 177 ~g 178 (196)
T cd00564 177 VI 178 (196)
T ss_pred Ee
Confidence 54
No 144
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=64.74 E-value=1.1e+02 Score=33.51 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=66.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~-V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I-r~~~~ipVI 110 (596)
-+|..+|=++...+.++.-++..+.+ + ....++...+ ......||+|++|- ++.. -+++..+ +.-..-.++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l---~~~~~~fDvIdlDP--fGs~-~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL---RYRNRKFHVIDIDP--FGTP-APFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH---HHhCCCCCEEEeCC--CCCc-HHHHHHHHHhcccCCEE
Confidence 47999999999999999988765432 2 2334444443 33223599999997 4432 2444443 333344688
Q ss_pred EEcCCCCHHH----HHHHH-HcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 111 MMSADGRVSA----VMRGI-RHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 111 llTa~~d~~~----~~eAl-~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
.+|+.+.... ...++ ++|+.-.-.+-....-|+-++..+.|.
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~~~~~~~~~E~glRiLlg~i~r~ 190 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGANPVKTESCHESALRLLLGFVKRT 190 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCcccCCcchHHHHHHHHHHHHHHH
Confidence 8887665442 45666 788754322223344455555555553
No 145
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=64.12 E-value=84 Score=34.00 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=73.8
Q ss_pred ccEEEEEeCCHHHH-------HHHHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHH
Q 007601 33 GLRVLVVDDDITCL-------RILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (596)
Q Consensus 33 girVLIVDDd~~i~-------~~L~~lL~~~~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MP-----dmdGleLl 98 (596)
.+|+=|+.|+.... +..+.+.+ .+|.| .+..|..+|.++..- . + +.++-+-=| +..--+.+
T Consensus 167 ~iKlEvi~e~~~llpd~~~~v~aa~~L~~-~Gf~v~~yc~~d~~~a~~l~~~-g--~-~avmPl~~pIGsg~gv~~p~~i 241 (326)
T PRK11840 167 LVKLEVLGDAKTLYPDMVETLKATEILVK-EGFQVMVYCSDDPIAAKRLEDA-G--A-VAVMPLGAPIGSGLGIQNPYTI 241 (326)
T ss_pred eEEEEEcCCCCCcccCHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHhc-C--C-EEEeeccccccCCCCCCCHHHH
Confidence 46666666554333 33333333 37877 355666666665543 2 4 222221111 12234566
Q ss_pred HHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHh
Q 007601 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (596)
Q Consensus 99 ~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~-----KPl~~eeL~~~l~~vlrk 152 (596)
+.+.+.+++|||+=.+-...+.+.+|+++|+++.+. |--++..+.++++.++..
T Consensus 242 ~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 242 RLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 666666789999999999999999999999999865 456788888888888764
No 146
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.06 E-value=45 Score=33.04 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=61.9
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc
Q 007601 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE 104 (596)
Q Consensus 34 irVLIV----DDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdG-leLl~~Ir~~ 104 (596)
-+|++. |.+..=...+..+|+..||+|.. -...++.++.+++.. ||+|.+-..|.. +.. .++++.+++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 356654 55566677788888889999874 335677888887764 999999998863 333 4456666643
Q ss_pred ---CCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 105 ---MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 105 ---~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
++++|+ +-+..-.. .-+-+.||+.|-.
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 234544 44433221 2344779998864
No 147
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=63.70 E-value=44 Score=35.43 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=63.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeC---------------------------------CC--CCCCHHHHHHHHhccCC
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDV---------------------------------HM--PDMDGFKLLEHIGLEMD 106 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI---------------------------------~M--PdmdGleLl~~Ir~~~~ 106 (596)
-|.+.+||+...+. .+|+|=+-. .. ....++++++++.+...
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~ 194 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGR 194 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcC
Confidence 57788888887764 478876654 11 12347899999976667
Q ss_pred CCEE--EEcCCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHHhh
Q 007601 107 LPVI--MMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVRKR 153 (596)
Q Consensus 107 ipVI--llTa~~d~~~~~eAl~~GA~DYL~KP-----l~~eeL~~~l~~vlrk~ 153 (596)
+||| ...+-...+.+.++++.||+.++.=. -++.+....+..++.++
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 9997 67777789999999999999986643 24666666666555543
No 148
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=63.59 E-value=36 Score=34.12 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=46.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCC
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVH 88 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y--~V~-~a~sg~eALe~L~e~~--~~pDLVLlDI~ 88 (596)
..|.+-+|.-||-++...+.-++.++..++ .|. ...++.+.+..+.... ..||+||+|..
T Consensus 66 ~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 66 ALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 345567999999999999999999998865 343 5677888888776432 36999999984
No 149
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=63.53 E-value=21 Score=37.11 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=43.8
Q ss_pred CHHHHHHHHh-ccCCCCEEEEcCC------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 007601 93 DGFKLLEHIG-LEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 93 dGleLl~~Ir-~~~~ipVIllTa~------~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~v 149 (596)
+.+++++++| ..+++|+|+||=. +-.....++.+.|+++.|.-.+..++....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3577888887 5678999998844 3344577788999999999778888887766665
No 150
>PLN02591 tryptophan synthase
Probab=63.14 E-value=25 Score=36.51 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=45.0
Q ss_pred CHHHHHHHHhccCCCCEEEEcCCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 93 DGFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 93 dGleLl~~Ir~~~~ipVIllTa~~d------~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
+.|++++++|...++|+|+||=+.. .....++-+.|+++.|.-.+..+|.......+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 4588888888667899998885542 334667779999999999899988887776653
No 151
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=62.94 E-value=43 Score=35.53 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=47.4
Q ss_pred CHHHHHHHHhccCCCCEE--EEcCCCCHHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHHhh
Q 007601 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRKR 153 (596)
Q Consensus 93 dGleLl~~Ir~~~~ipVI--llTa~~d~~~~~eAl~~GA~DYL~K-----Pl~~eeL~~~l~~vlrk~ 153 (596)
.++++++++++...+||| ...+-...+.+..++++||+.++.= .-++.+....+..++.++
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 589999999766679998 6666678999999999999998554 336777777776666654
No 152
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=61.13 E-value=73 Score=27.82 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=53.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~s-g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
.+|.+||.++...+.+ +..++.+....- -.+.++.+.- ...+.+++...- +..-+.++..+++ ++..+||+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGI--EKADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCc--cccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 6899999999764433 334566554222 1233443332 347888887642 2334666667765 66788887
Q ss_pred EcCCCCHHHHHHHHHcCCCeEE
Q 007601 112 MSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL 133 (596)
.... .+........|++..+
T Consensus 95 ~~~~--~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 95 RVND--PENAELLRQAGADHVI 114 (116)
T ss_dssp EESS--HHHHHHHHHTT-SEEE
T ss_pred EECC--HHHHHHHHHCCcCEEE
Confidence 7653 3445555578887655
No 153
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=60.87 E-value=13 Score=37.12 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=52.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCH--HHHHHHHhccCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDG--FKLLEHIGLEMDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~--MPdmdG--leLl~~Ir~~~~ip 108 (596)
+++||+||....+--.|..+|+..+.+|....+....++.++.. .||.|++--- -|...| .+++++. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~--~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL--KPDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc--CCCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 46899999999999999999999988888776654333444443 3899988642 233333 4445554 35678
Q ss_pred EEEE
Q 007601 109 VIMM 112 (596)
Q Consensus 109 VIll 112 (596)
|+=+
T Consensus 77 iLGV 80 (191)
T COG0512 77 ILGV 80 (191)
T ss_pred EEEE
Confidence 8754
No 154
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.83 E-value=56 Score=34.39 Aligned_cols=90 Identities=11% Similarity=0.197 Sum_probs=55.6
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC---eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-h---c-
Q 007601 36 VLVVDDDITCLRILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-G---L- 103 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~----~~y---~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I-r---~- 103 (596)
|||=|.|-.....+...++. ..+ ....+.+.+||++.++. .+|+|.+|- |+ ++.++++ + .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn----~~-~e~l~~~v~~~~~~ 226 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN----MS-VEEIKEVVAYRNAN 226 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC----CC-HHHHHHHHHHhhcc
Confidence 55555554444444444432 332 23478999999999864 489999884 33 3333332 2 1
Q ss_pred cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 104 ~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
.+. ..|..++--+.+.+.+..+.|++-...
T Consensus 227 ~~~-~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 227 YPH-VLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCC-eEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 123 356677777888899999999976543
No 155
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.51 E-value=66 Score=35.86 Aligned_cols=93 Identities=15% Similarity=0.061 Sum_probs=55.0
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CC-CCCHHHHHHHH-h-c
Q 007601 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MP-DMDGFKLLEHI-G-L 103 (596)
Q Consensus 32 ~girVLIVDDd~~i---~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~--MP-dmdGleLl~~I-r-~ 103 (596)
.+.+|.+|+-|+-- .+.++.+-+..++.+..+.+..+....++... ++|+||+|.- .+ +....+.++.+ + .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 46799999998742 23344444445667777778777777776554 5899999963 22 22233334433 3 1
Q ss_pred -cCCCCEEEEcCCCCHHHHHHHH
Q 007601 104 -EMDLPVIMMSADGRVSAVMRGI 125 (596)
Q Consensus 104 -~~~ipVIllTa~~d~~~~~eAl 125 (596)
.+.-..+++++........+++
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHHH
Confidence 1222356677766655555443
No 156
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=58.29 E-value=2e+02 Score=29.83 Aligned_cols=95 Identities=18% Similarity=0.085 Sum_probs=60.2
Q ss_pred EEEeC-CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHh-ccC-CCCE
Q 007601 37 LVVDD-DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV---HMPDMDGFKLLEHIG-LEM-DLPV 109 (596)
Q Consensus 37 LIVDD-d~~i~~~L~~lL~~~~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI---~MPdmdGleLl~~Ir-~~~-~ipV 109 (596)
|++.+ ++...+.+....+..+.++ ..+.+.+|+...... .+|+|-+.- .....| ++...++. ..+ ..++
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~v 214 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLV 214 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEE
Confidence 33333 3433444444445557664 478888888665532 378876532 111223 66666664 334 3588
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
|..++-...+.+.++.++|++.++.-
T Consensus 215 IaegGI~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999999998664
No 157
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=58.14 E-value=32 Score=35.69 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=43.7
Q ss_pred CHHHHHHHHhcc-CCCCEEEEcCCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 007601 93 DGFKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 93 dGleLl~~Ir~~-~~ipVIllTa~~d------~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~v 149 (596)
+.+++++.+|+. .++|+++|+-... .....++.++|+++.+.-.+..++....+..+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 457778888755 6899888876654 56677888999999999888888877666554
No 158
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=56.48 E-value=36 Score=35.53 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=44.1
Q ss_pred CHHHHHHHHhccCCCCEEEEcCCC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 007601 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 93 dGleLl~~Ir~~~~ipVIllTa~~------d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~v 149 (596)
+.+++++++|....+|+|+||=+. -.....++.+.|+++.+.-.+..+|.......+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 457888888867889999888654 344577888999999999888888876665554
No 159
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=56.21 E-value=66 Score=28.36 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=49.7
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHh-ccC-CCCEEEE
Q 007601 40 DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIG-LEM-DLPVIMM 112 (596)
Q Consensus 40 DDd~~i~~~L~~lL~~~~y~V~~a~---sg~eALe~L~e~~~~pDLVLlDI~MPdm-dGleLl~~Ir-~~~-~ipVIll 112 (596)
|.++.-...+..++++.++++.... ...+..+.+.+. .||+|.+...+... ..++.+..++ ..+ +++|++=
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5667777888899999999887443 556667777664 49999999877643 3455666664 345 6777653
No 160
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=55.91 E-value=6.3 Score=33.48 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
++...|..++..++..+ +...+. ...+.+..++-|||+||...
T Consensus 3 ~~~~~H~~~v~~~~~~l---~~~~~~--~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 3 YHVFEHSLRVAQLAAAL---AEELGL--LDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred chHHHHHHHHHHHHHHH---HHHcCh--HHHHHHHHHHHHHcccCccC
Confidence 45678988998888888 666664 23356778889999999875
No 161
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=54.64 E-value=1.2e+02 Score=32.24 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCC-C----CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHH
Q 007601 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI 125 (596)
Q Consensus 52 lL~~~~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MP-d----mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl 125 (596)
.++..+..| ..+.+.++|..+.+. .+|.|++.-.-. + ..-++++.+++..-++|||.--+-.+.+.+.+++
T Consensus 104 ~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al 180 (307)
T TIGR03151 104 RLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF 180 (307)
T ss_pred HHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH
Confidence 344445444 367788888666543 489988854321 2 2348888888766679999988888999899999
Q ss_pred HcCCCeEEeCC
Q 007601 126 RHGACDYLIKP 136 (596)
Q Consensus 126 ~~GA~DYL~KP 136 (596)
..||+....=.
T Consensus 181 ~~GA~gV~iGt 191 (307)
T TIGR03151 181 ALGAEAVQMGT 191 (307)
T ss_pred HcCCCEeecch
Confidence 99999876643
No 162
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=54.60 E-value=1.1e+02 Score=29.66 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=50.1
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCe
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACD 131 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd--------mdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~D 131 (596)
.++.+.+++.+..+ . .+|.|.++-..+. ..|++.++++.. .+.+||+.+-+- ..+.+.++++.|+++
T Consensus 101 ~s~h~~~e~~~a~~-~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEA-E--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhH-c--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 46777787766443 2 4899998766542 237899998854 356898888666 467788888999988
Q ss_pred EEe
Q 007601 132 YLI 134 (596)
Q Consensus 132 YL~ 134 (596)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 654
No 163
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=54.33 E-value=1.2e+02 Score=29.93 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=57.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCC-CC-CCCHHHHHHHHhccCC
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVH-MP-DMDGFKLLEHIGLEMD 106 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~-------sg~eALe~L~e~~~~pDLVLlDI~-MP-dmdGleLl~~Ir~~~~ 106 (596)
|||=|-|...++.++..-++.+-++.+.+ ++++.++++.+.+++|=+|+.|=. .. ...|-+.++.+-..++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 45557788888899988888888876554 788999999988888888888764 33 3568888888876777
Q ss_pred CCEE
Q 007601 107 LPVI 110 (596)
Q Consensus 107 ipVI 110 (596)
+.|+
T Consensus 83 IeVL 86 (180)
T PF14097_consen 83 IEVL 86 (180)
T ss_pred ceEE
Confidence 6543
No 164
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=52.88 E-value=1.2e+02 Score=30.19 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=54.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--C----C---------eEEEECCHHHHHHHHHhc-CCCceEEEEeCCC-CCCCHHHH
Q 007601 35 RVLVVDDDITCLRILEQMLRRC--L----Y---------NVTTCSQAAVALDILRER-KGCFDVVLSDVHM-PDMDGFKL 97 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~--~----y---------~V~~a~sg~eALe~L~e~-~~~pDLVLlDI~M-PdmdGleL 97 (596)
+-.||..-+..++..++++.-+ | | .|..+.+.+++++.+++. ...|-+|-+|..- |+.-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5678888888888888888743 2 1 278999999999998763 2359999999983 55445665
Q ss_pred HHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCC
Q 007601 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (596)
Q Consensus 98 l~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~ 138 (596)
+++.-...+-|++++.+.+.- ...+.+ ..+||++.|+.
T Consensus 124 lr~~l~~~~~P~LllFGTGwG-L~~ev~--~~~D~iLePI~ 161 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWG-LAPEVM--EQCDYILEPIR 161 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT----HHHH--TT-SEEB--TT
T ss_pred HHHHHhccCCeEEEEecCCCC-CCHHHH--HhcCeeEcccc
Confidence 555433455677666443321 222333 35789999974
No 165
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=52.52 E-value=74 Score=31.69 Aligned_cols=67 Identities=10% Similarity=0.205 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcC-CCeEEe
Q 007601 66 AAVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI 134 (596)
Q Consensus 66 g~eALe~L~e~~~~pD-LVLlDI~MPd-mdG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~G-A~DYL~ 134 (596)
..+..+.+.+.. ++ ++++|+...+ ..| +++++++++...+|||.-.+-.+.+.+.++++.| |++.+.
T Consensus 148 ~~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 355555555432 56 8888886543 234 7888998766679999999899999999999988 888765
No 166
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=52.11 E-value=85 Score=33.28 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=46.3
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
....+.+.++|.+.++. .+|+|++| +|+..+--++++.++....-.++-.|+--..+.+.+-...|++-..
T Consensus 192 IeVEv~tleqa~ea~~a---gaDiI~LD-n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 192 IVVEADTPKEAIAALRA---QPDVLQLD-KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EEEECCCHHHHHHHHHc---CCCEEEEC-CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 34578899999999864 48999999 4433222333444432122235667888888888777788876543
No 167
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=51.83 E-value=1.6e+02 Score=33.33 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEEC------CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cCCCCEEEE
Q 007601 42 DITCLRILEQMLRRCL-YNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 42 d~~i~~~L~~lL~~~~-y~V~~a~------sg~eALe~L~e~~~~pDLVLlDI~MPdm-dGleLl~~Ir~-~~~ipVIll 112 (596)
.|.-...+...|+..| ++|.... +.++..+.+++. .||+|.+-..-+.. ...++++.+|+ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4667788888998888 5776543 233444555554 49999997655543 34567777764 577777764
Q ss_pred cCCCCHHHHHHHH-HcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 113 SADGRVSAVMRGI-RHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 113 Ta~~d~~~~~eAl-~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
-.+... ...+++ ++...||+..--..+.+..+++.+..
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 333333 233455 35667899998777777777776543
No 168
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=51.83 E-value=2.1e+02 Score=29.82 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=66.6
Q ss_pred CccEEEEEeCCH----HHHHHH--HHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----HHHH
Q 007601 32 AGLRVLVVDDDI----TCLRIL--EQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLL 98 (596)
Q Consensus 32 ~girVLIVDDd~----~i~~~L--~~lL~~~~y~V~~a~--sg~eALe~L~e~~~~pDLVLlDI~MPdmdG-----leLl 98 (596)
..+|+=|+.|+. +..+.+ .+.|-+.||.|..+. |..-|.+ |.+-. ... ++-+--|=.+| -..+
T Consensus 92 ~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akr-L~d~G--caa-vMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR-LEDAG--CAA-VMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHH-HHHTT---SE-BEEBSSSTTT---SSTHHHH
T ss_pred CeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHH-HHHCC--CCE-EEecccccccCcCCCCHHHH
Confidence 347777776653 222222 233445699997443 3444433 33332 222 22233332232 3456
Q ss_pred HHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHHh
Q 007601 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVRK 152 (596)
Q Consensus 99 ~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP-----l~~eeL~~~l~~vlrk 152 (596)
+.|++..++|||+=.+-.....+.+|++.|++..|.-. -++..+.+++++++..
T Consensus 168 ~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 168 RIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 77766669999999999999999999999999998863 5778888888888764
No 169
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.42 E-value=92 Score=31.76 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 67 AVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 67 ~eALe~L~e~~~~pDLVLlDI~MPdm-dG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.+.++.+.+.. --.+|++|+...++ .| +++++++.+...+|||+-.+-.+.+.+.++++.|++..+.=
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 44455544432 24799999977543 33 67788887667899999999999999999999999988763
No 170
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=50.97 E-value=2.6e+02 Score=27.65 Aligned_cols=78 Identities=14% Similarity=0.000 Sum_probs=52.5
Q ss_pred hCCCeE-EEECCHHHHHHHHHhcCCCceEEEEe-CCC-CCCCHHHHHHHHhcc--CCCCEEEEcCCCCHHHHHHHHHcCC
Q 007601 55 RCLYNV-TTCSQAAVALDILRERKGCFDVVLSD-VHM-PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGA 129 (596)
Q Consensus 55 ~~~y~V-~~a~sg~eALe~L~e~~~~pDLVLlD-I~M-PdmdGleLl~~Ir~~--~~ipVIllTa~~d~~~~~eAl~~GA 129 (596)
..+..+ ..+.+.+++.+..+. .+|.+.+- ... ....+++++++++.. .++|||...+-...+.+.+++++||
T Consensus 119 ~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga 195 (217)
T cd00331 119 ELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGA 195 (217)
T ss_pred HcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCC
Confidence 345554 356677776665543 37777554 111 112346778888644 4689999999999999999999999
Q ss_pred CeEEeC
Q 007601 130 CDYLIK 135 (596)
Q Consensus 130 ~DYL~K 135 (596)
++.+.=
T Consensus 196 ~gvivG 201 (217)
T cd00331 196 DAVLIG 201 (217)
T ss_pred CEEEEC
Confidence 998653
No 171
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=50.77 E-value=1.8e+02 Score=32.12 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=63.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIll 112 (596)
.++++||-|.+. ++.++.+.+.....+.-.-..++..+++.. .|++++=-. .+.=|+.+++.+. ..+|||.-
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 467777766553 344455444332222223344555555543 477665322 2333566677663 46888853
Q ss_pred cCCCCHHHHHHHHHc---CCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 113 SADGRVSAVMRGIRH---GACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~---GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
. ..+ ..+.++. |-++++..|-+.++|...+..++.
T Consensus 362 ~-~gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 R-AGG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred C-CCC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 3 333 2344555 889999999999999999988774
No 172
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.87 E-value=1.3e+02 Score=32.04 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=54.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 007601 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~----~~--y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ 106 (596)
-|||=|.|-...-.++..+.. .+ ..| ..+.+.+|+.+.+.. .+|+|.+|- |.-.+=-+.++.++. .+.
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn-~~~e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDN-MPVDLMQQAVQLIRQQNPR 243 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHHHhcCCC
Confidence 366666654444334444432 23 223 478899999998853 489999993 321111122333332 345
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
++ |..++--+.+.+.+....|++..-
T Consensus 244 i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 244 VK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 54 445555677778788889987653
No 173
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=49.09 E-value=1.9e+02 Score=29.02 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=45.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 80 pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.|++++-....+.-|+.+++.+. ..+|||. |..+. ..+.+..+..+++.++-+.+++..++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~-~~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIA-SDIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEE-CCCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46666533323445667777774 4678875 33332 3455677888999999999999999998875
No 174
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=49.03 E-value=2.6e+02 Score=30.23 Aligned_cols=98 Identities=11% Similarity=0.130 Sum_probs=63.8
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEeCC----------CC-CCC--H
Q 007601 35 RVLVVDDD----ITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVH----------MP-DMD--G 94 (596)
Q Consensus 35 rVLIVDDd----~~i~~~L~~lL~~~~-y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~----------MP-dmd--G 94 (596)
.++++|-- ....+.++.+-+.+. ..|. .+.+.++|..+++. .+|.|.+-+. .. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 78888643 333344444433332 2232 47788888887753 4788763311 11 122 5
Q ss_pred HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 95 leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+..+..+++...+|||.-.+-.....+.+|+..||+....=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 65677776555799999999999999999999999987664
No 175
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.02 E-value=1.8e+02 Score=29.34 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=55.0
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHc
Q 007601 51 QMLRRCL-YNVTTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRH 127 (596)
Q Consensus 51 ~lL~~~~-y~V~~a~sg~eALe~L~e~~-~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~ 127 (596)
..|.+.+ .-|....+.+++++..+.-. ..+++ +.+.|-.-++++.++.+++ .+++ +|-.-.--+.+.+.++++.
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~--iEitl~~~~~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a~~a 86 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLPV--LEVTLRTPAALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQAIEA 86 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCE--EEEecCCccHHHHHHHHHHHCCCC-EEEEeeccCHHHHHHHHHc
Confidence 3344433 45667888888888776432 13554 4444555579999999974 4442 3333333455778899999
Q ss_pred CCCeEEeCC-CCHHHHHH
Q 007601 128 GACDYLIKP-IREEELKN 144 (596)
Q Consensus 128 GA~DYL~KP-l~~eeL~~ 144 (596)
||+ |+.-| ++. ++.+
T Consensus 87 GA~-FivsP~~~~-~vi~ 102 (212)
T PRK05718 87 GAQ-FIVSPGLTP-PLLK 102 (212)
T ss_pred CCC-EEECCCCCH-HHHH
Confidence 997 55556 666 4433
No 176
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.78 E-value=96 Score=34.57 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=38.1
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEeCC
Q 007601 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDVH 88 (596)
Q Consensus 32 ~girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~--~~pDLVLlDI~ 88 (596)
.+.+|.+|+-|+- ..+.++.+-+..+..+..+.+..+..+.+.... ..+|+||+|.-
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 4678999998864 234555555555666666778777666555332 35899999983
No 177
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=47.72 E-value=1.1e+02 Score=31.12 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=52.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPd-mdG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
+..+.++.+... .-.++++|+...+ +.| +++++++.....+||++-.+-...+.+.++++.|++..+.
T Consensus 147 ~~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 356666666544 2369999997754 233 6778888766789999999999999999999999998775
No 178
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=47.68 E-value=2.6e+02 Score=29.19 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=43.0
Q ss_pred HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCe------EEeCCCCHHHHHHHHHHHHHh
Q 007601 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 95 leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~D------YL~KPl~~eeL~~~l~~vlrk 152 (596)
++.+.++++.-++|||..-+-.+.+.+.+++..||+. ++.+|.-..+++.-+.+.+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 3667777666679999999999999999999999876 466675555566656555543
No 179
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=47.38 E-value=82 Score=30.63 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCC-------HHHHHHHHhcc-----CCCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPdmd-------GleLl~~Ir~~-----~~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
+..+.++.+.. .+|.|+++-.-|+.+ +++.++++++. +.+||++.-+- ..+.+.++++.||+.+
T Consensus 115 t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI-~~env~~l~~~gad~i 190 (210)
T TIGR01163 115 TPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGV-NDDNARELAEAGADIL 190 (210)
T ss_pred CCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCc-CHHHHHHHHHcCCCEE
Confidence 34555554432 257777765444333 34445555421 23576665555 4677888889999988
Q ss_pred EeCC
Q 007601 133 LIKP 136 (596)
Q Consensus 133 L~KP 136 (596)
+.-.
T Consensus 191 ivgs 194 (210)
T TIGR01163 191 VAGS 194 (210)
T ss_pred EECh
Confidence 7653
No 180
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=47.13 E-value=2.2e+02 Score=29.19 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCceE-EEEeCCC----CCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcC-CCeEEe------
Q 007601 67 AVALDILRERKGCFDV-VLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI------ 134 (596)
Q Consensus 67 ~eALe~L~e~~~~pDL-VLlDI~M----PdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~G-A~DYL~------ 134 (596)
.+..+.+.+. .+|. ++.|+.- ++- -+++++++++...+|||..-+-.+.+.+.++++.| ++..+.
T Consensus 158 ~~~~~~l~~~--G~~~iivt~i~~~g~~~g~-~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKL--GAGEILLTSMDKDGTKSGY-DLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHc--CCCEEEEeCcCcccCCCCC-CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 3444444443 3674 5545422 222 26888888777789999999999999999999888 877433
Q ss_pred CCCCHHHHHHHHH
Q 007601 135 KPIREEELKNIWQ 147 (596)
Q Consensus 135 KPl~~eeL~~~l~ 147 (596)
+-++..+++..++
T Consensus 235 ~~~~~~~~~~~~~ 247 (254)
T TIGR00735 235 REITIGEVKEYLA 247 (254)
T ss_pred CCCCHHHHHHHHH
Confidence 2356666655544
No 181
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.10 E-value=88 Score=35.10 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=37.5
Q ss_pred CCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEeC
Q 007601 31 PAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (596)
Q Consensus 31 p~girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~--~~pDLVLlDI 87 (596)
..+.+|.+++-|+- ..+.++.+-+..++.+..+.+..+..+.+.... .++|+||+|.
T Consensus 267 ~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 267 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 34678999998864 334445544455777777777766655554322 1489999996
No 182
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=46.98 E-value=48 Score=35.25 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=48.5
Q ss_pred CHHHHHHHHhccCCCCEE--EEcCCCCHHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHHhhc
Q 007601 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 93 dGleLl~~Ir~~~~ipVI--llTa~~d~~~~~eAl~~GA~DYL~K-----Pl~~eeL~~~l~~vlrk~~ 154 (596)
.++++++++++...+||| ...+-...+.+..++++||+..+.= .-++.+....+..++..+.
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 478999999766679998 6777778999999999999998654 3377777777777776653
No 183
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=46.60 E-value=1.4e+02 Score=27.62 Aligned_cols=56 Identities=18% Similarity=0.019 Sum_probs=40.9
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 79 CFDVVLSDVHMPDMDG-------FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 79 ~pDLVLlDI~MPdmdG-------leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
..|.|.++-..+...+ ...+..++....+||+...+-...+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 4788888877764321 2444555556789999988888878899999999887653
No 184
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.17 E-value=3.1e+02 Score=28.36 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=60.0
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EE--CCHHHHHHHHHhcCCCceEEEEeCC-CCC------CCHHHHHHHH
Q 007601 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TC--SQAAVALDILRERKGCFDVVLSDVH-MPD------MDGFKLLEHI 101 (596)
Q Consensus 33 girVLIVDDd~-~i~~~L~~lL~~~~y~V~-~a--~sg~eALe~L~e~~~~pDLVLlDI~-MPd------mdGleLl~~I 101 (596)
|..-+|+=|.+ .....+...+++.+.... .+ .+..+-++.+.+....+..++. +. -.+ .+-.+.++++
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~l 193 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-RAGVTGARNRAASALNELVKRL 193 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-CCCCCCCcccCChhHHHHHHHH
Confidence 44555554444 444455556666665532 22 1223344444444434666554 21 111 1246677777
Q ss_pred hccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 102 r~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
|+..+.||++=.+-...+.+.++.++||+..+.-.
T Consensus 194 r~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 194 KAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 76667798876666678899999999999999874
No 185
>PRK10742 putative methyltransferase; Provisional
Probab=45.93 E-value=2.1e+02 Score=29.93 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=41.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------C----CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC------L----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM 92 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~------~----y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdm 92 (596)
|-+|..||-++.+...++.-|+.. + -.+. ...+..+.++. ....||+|++|-..|.-
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCC
Confidence 567999999999999999999873 1 1122 34455555543 33359999999988863
No 186
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=45.71 E-value=1.7e+02 Score=25.75 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=14.8
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE
Q 007601 39 VDDDITCLRILEQMLRRCLYNVTT 62 (596)
Q Consensus 39 VDDd~~i~~~L~~lL~~~~y~V~~ 62 (596)
-|.+......+.+.|...||++..
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVA 31 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEE
Confidence 345555555566666667888864
No 187
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=45.45 E-value=74 Score=36.44 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=45.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~s-g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVI 110 (596)
+..|++||.|+...+.++ +.++.+...+- ..+.++...- ++.|.+++-+.=.+. -..++..+| .+++.+||
T Consensus 440 g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~~~~~~-~~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 440 GIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHL--DCARWLLLTIPNGYE-AGEIVASAREKRPDIEII 512 (558)
T ss_pred CCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCc--cccCEEEEEcCChHH-HHHHHHHHHHHCCCCeEE
Confidence 456777777765444333 23555443221 1233333322 246766654422211 123444444 45778888
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEE
Q 007601 111 MMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL 133 (596)
....+. +......+.||+..+
T Consensus 513 ar~~~~--~~~~~l~~~Gad~vv 533 (558)
T PRK10669 513 ARAHYD--DEVAYITERGANQVV 533 (558)
T ss_pred EEECCH--HHHHHHHHcCCCEEE
Confidence 876543 334444578887544
No 188
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=45.40 E-value=1.9e+02 Score=26.52 Aligned_cols=110 Identities=20% Similarity=0.274 Sum_probs=66.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~--sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i 107 (596)
..++++|+.+.+... .+....+..+. .+.... ..++..++++. .|++++=... +.-|..+++.+. ..+
T Consensus 46 ~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~ 117 (172)
T PF00534_consen 46 PNYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGC 117 (172)
T ss_dssp TTEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-
T ss_pred CCeEEEEEccccccc-cccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--ccc
Confidence 346778887333322 24444443322 233333 33466666654 5777765544 445677777773 456
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|||+ +..+ ...+.+..+..+|+..+.+.+++...+.+++...
T Consensus 118 pvI~-~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 118 PVIA-SDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEEE-ESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ceee-cccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 7774 3322 2456678888999999999999999999988653
No 189
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=45.29 E-value=1.6e+02 Score=30.90 Aligned_cols=65 Identities=25% Similarity=0.276 Sum_probs=43.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 80 pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.|++++=-. .+.-|..+++.+. ..+|||. |..++ ..+.+..|.++++..|-+.+++...+..++.
T Consensus 273 adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 273 LDLFVLPSL-AEGISNTILEAMA--SGLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred cCEEEeccc-cccCchHHHHHHH--cCCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 465554222 2233566777763 5678876 33333 3455677888999999999999999988764
No 190
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=45.28 E-value=2.1e+02 Score=30.95 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|..+++.+. ..+|||.--...+.....+.+. ..+++..|-+.++|...+..++.
T Consensus 334 g~~~lEAma--~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 334 GHNPLEPAA--FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred CCCHHHHHH--hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 333444442 4678886322233433434332 12466667889999999888764
No 191
>PRK14098 glycogen synthase; Provisional
Probab=45.20 E-value=2.6e+02 Score=31.54 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=62.4
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 33 GLRVLVVDD-DITCLRILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 33 girVLIVDD-d~~i~~~L~~lL~~~~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
.++++|+-+ +....+.++.+.++..-.| ....+..++.+++.. .|++++=-. .+--|+..++.++ ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~-~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGK-IESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCC-CCCchHHHHHHHh--CCCCe
Confidence 466777765 3334555666655443223 233344444444432 577765322 2344666666664 44555
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|+...-.-.+.+.+....+.++|+..|.+.++|..++.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 543322222223232334678999999999999999988764
No 192
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=45.04 E-value=2.9e+02 Score=26.61 Aligned_cols=99 Identities=10% Similarity=0.043 Sum_probs=61.3
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCeE----EEECCHHHHHHHHHhcCCCceEEEEeCC-CC----CCCHHHHHHHH
Q 007601 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNV----TTCSQAAVALDILRERKGCFDVVLSDVH-MP----DMDGFKLLEHI 101 (596)
Q Consensus 33 girVLIVDDd~--~i~~~L~~lL~~~~y~V----~~a~sg~eALe~L~e~~~~pDLVLlDI~-MP----dmdGleLl~~I 101 (596)
|...+++.+.. ...+.+.+.+++.+..+ ..+.+..++++.+. . ..|.|.+... .+ ...+.+.++++
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 45556654443 22334444455555443 35667788877443 2 4788877421 11 24567778887
Q ss_pred hccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 102 r~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+...++||++.-+- ..+.+.++++.||+.++.=
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 65467888776665 4788899999999987654
No 193
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=44.51 E-value=2e+02 Score=32.91 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=56.9
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeC--------------CCC
Q 007601 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDV--------------HMP 90 (596)
Q Consensus 32 ~girVLIVDD----d~~i~~~L~~lL~~~-~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI--------------~MP 90 (596)
++..+++||- .....+.++.+-+.+ ...|. .+.+.++|..+++. ..|.|.+.+ -.|
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCC
Confidence 3566777774 333334444444332 22332 35566666666643 367775432 123
Q ss_pred CCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 91 dmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
..+-+.-+.++....++|||.=-+-.....+.+|+.+||+....=.
T Consensus 329 ~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 329 QASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred hHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 2222112222223356888876677788899999999999876643
No 194
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=44.40 E-value=1.7e+02 Score=32.34 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=62.0
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEE-----------------------CCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 007601 40 DDDITCLRILEQMLRRCLYN----VTTC-----------------------SQAAVALDILRERKGCFDVVLSDVHMPDM 92 (596)
Q Consensus 40 DDd~~i~~~L~~lL~~~~y~----V~~a-----------------------~sg~eALe~L~e~~~~pDLVLlDI~MPdm 92 (596)
+++....+.+++.+++.+|+ +..+ .+.++++++++...++++++.+.==++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56778788888888766443 2222 34478888776532347787776555544
Q ss_pred CHHHHHHHHhccC--CCCEEEEcCC---CCHHHHHHHHHcCCCeE-EeCCCCHHHHHHH
Q 007601 93 DGFKLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPIREEELKNI 145 (596)
Q Consensus 93 dGleLl~~Ir~~~--~ipVIllTa~---~d~~~~~eAl~~GA~DY-L~KPl~~eeL~~~ 145 (596)
| ++-.++|+..- .+|| +... .+.....++++.++.|+ ++||-...-|..+
T Consensus 290 D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~ 345 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTET 345 (408)
T ss_pred C-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHH
Confidence 4 55556665443 4444 3333 25777888888777664 6688654434333
No 195
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=44.33 E-value=2.4e+02 Score=30.67 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=60.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHH-HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAV-ALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~-~y~V~-~a~sg~e-ALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ip 108 (596)
..+||.||-- -.-...+..+.+.. ++++. .++...+ |.+..++.. +. ...|+ -+++ ...++-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g--i~-~y~~~-------eell----~d~Di~ 66 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG--VP-LYCEV-------EELP----DDIDIA 66 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC--CC-ccCCH-------HHHh----cCCCEE
Confidence 4578999887 43333333333322 46655 4444333 433333321 11 22221 1222 234555
Q ss_pred EEEEc----CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 109 VIMMS----ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 109 VIllT----a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
+|.+. .....+.+.+|++.|..=++.||+..+|..++++.+-+
T Consensus 67 ~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 67 CVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 55552 23557889999999999999999998788777776654
No 196
>PRK10119 putative hydrolase; Provisional
Probab=44.32 E-value=11 Score=38.59 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCc
Q 007601 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGR 306 (596)
Q Consensus 265 aSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGK 306 (596)
-.|+.||...++.| |+..+.+ .+.+..|+-|||++.
T Consensus 27 ~~Hi~RV~~lA~~I---a~~e~~D---~~vv~lAAlLHDv~d 62 (231)
T PRK10119 27 ICHFRRVWATAQKL---AADDDVD---MLVVLTACYFHDIVS 62 (231)
T ss_pred hHHHHHHHHHHHHH---HHhcCCC---HHHHHHHHHHhhcch
Confidence 57999999999999 7666654 346667899999975
No 197
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=44.15 E-value=4.3e+02 Score=28.31 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE-EeCCCCHHHHHH
Q 007601 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPIREEELKN 144 (596)
Q Consensus 66 g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY-L~KPl~~eeL~~ 144 (596)
.++..+.+.. .|++++--...+.-|.-+++.+. ..+|||.. ..+. ..+.+..|.++| +..|.+.++|.+
T Consensus 267 ~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma--~G~PVI~s-~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~ 336 (380)
T PRK15484 267 PEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA--AGKPVLAS-TKGG---ITEFVLEGITGYHLAEPMTSDSIIS 336 (380)
T ss_pred HHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH--cCCCEEEe-CCCC---cHhhcccCCceEEEeCCCCHHHHHH
Confidence 3444454432 57777643333333555666663 56888763 3333 334567788999 557899999999
Q ss_pred HHHHHHH
Q 007601 145 IWQHVVR 151 (596)
Q Consensus 145 ~l~~vlr 151 (596)
.+.+++.
T Consensus 337 ~I~~ll~ 343 (380)
T PRK15484 337 DINRTLA 343 (380)
T ss_pred HHHHHHc
Confidence 9988774
No 198
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=44.01 E-value=2.2e+02 Score=30.51 Aligned_cols=90 Identities=10% Similarity=0.073 Sum_probs=54.3
Q ss_pred EEEEeCCHHHHHHHHHHHHh----C--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 36 VLVVDDDITCLRILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~----~--~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
|||=|.+-...-.+...+++ . ......+.+.+++.+.++. .+|+|++|-.-| -++-+.++....-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~----e~~~~av~~~~~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT----EQMREAVKRTNGRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh----HHHHHHHHhhcCCeE
Confidence 55555554444334444432 2 2244578999999999874 389999995444 222222332222235
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeE
Q 007601 110 IMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DY 132 (596)
|..|+--+.+.+.+..+.|++-.
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 66777778888888778888644
No 199
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=43.92 E-value=1.8e+02 Score=33.35 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=67.5
Q ss_pred CccEEEEEeCCHH----HHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHhcCCCceEEEEeC--------C------CC
Q 007601 32 AGLRVLVVDDDIT----CLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDV--------H------MP 90 (596)
Q Consensus 32 ~girVLIVDDd~~----i~~~L~~lL~~~-~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI--------~------MP 90 (596)
++..|+++|--.- ..+.++.+=+.+ +..| ..+.+.++|..+++. ..|.|.+-+ + .|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 4677888886432 223333333333 2333 257889999888863 489887642 1 12
Q ss_pred CCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 91 dmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
...-+..+.++.....+|||.=.+......+.+|+.+||+....=
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 334555666665556799999999999999999999999987664
No 200
>PRK14974 cell division protein FtsY; Provisional
Probab=43.80 E-value=2.7e+02 Score=30.15 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=52.5
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECCH-------HHHHHHHHhcCCCceEEEEeCC--CCCCCHHHHHH
Q 007601 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQA-------AVALDILRERKGCFDVVLSDVH--MPDMDGFKLLE 99 (596)
Q Consensus 32 ~girVLIVDDd~---~i~~~L~~lL~~~~y~V~~a~sg-------~eALe~L~e~~~~pDLVLlDI~--MPdmdGleLl~ 99 (596)
.+.+|++++-|. ...+.++.+.+..+..+.....+ .++++.++.. .+|+||+|.. ++. -.+++.
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTaGr~~~--~~~lm~ 242 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTAGRMHT--DANLMD 242 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECCCccCC--cHHHHH
Confidence 357899998873 44455566666666655433322 2344444433 4899999984 221 223333
Q ss_pred HHh-----ccCCCCEEEEcCCCCHHHHHH--HH--HcCCCeEEe
Q 007601 100 HIG-----LEMDLPVIMMSADGRVSAVMR--GI--RHGACDYLI 134 (596)
Q Consensus 100 ~Ir-----~~~~ipVIllTa~~d~~~~~e--Al--~~GA~DYL~ 134 (596)
.++ ..++..++++.+....+.... .| ..+++..+.
T Consensus 243 eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 243 ELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 332 235555666666555444432 33 246666543
No 201
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=43.79 E-value=2e+02 Score=32.06 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=43.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHc------CCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH------GACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 80 pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~------GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.|++++--.. +.-|+.+++.+. ..+|||. |..+.. .+.+.. |.++++..|-+.++|.+++.+++.
T Consensus 371 aDv~vlpS~~-Eg~p~~vlEAma--~G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 371 LDVLVLTSIS-EGQPLVILEAMA--AGIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CCEEEeCchh-hcCChHHHHHHH--cCCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 5776664432 334566777663 4678876 444433 344444 778999999999999999998864
No 202
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=43.69 E-value=1.3e+02 Score=29.46 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=33.4
Q ss_pred ceEEEEeCCCCCCC-------HHHHHHHHhcc-C--CC-CEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 80 FDVVLSDVHMPDMD-------GFKLLEHIGLE-M--DL-PVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 80 pDLVLlDI~MPdmd-------GleLl~~Ir~~-~--~i-pVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
+|.|+++-.-|+.+ +++.+++++.. . .+ ++|++.+--..+.+.++.+.|++.++.-.
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGS 199 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 67777765445433 34444555322 1 22 45555555556778888889999876553
No 203
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=43.58 E-value=3e+02 Score=27.12 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=60.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
.++++|+.+.+.. ..++..+...+. .|......++..+++.. .|+++.-.... .-|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~e-~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPER-EALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRFE-GFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCCH-HHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCcccc-ccCHHHHHHHH--cCCCEE
Confidence 3456666543321 223333333322 23333223444444432 57777765442 23666777763 577887
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
........ .+....+..+++.++.+.+++...+..++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 54322222 334566678899999999999999998864
No 204
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=43.43 E-value=27 Score=34.55 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=36.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
|||||.+..+-..+...|++.++++......+..++.+... .||.||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999888887766553333444332 3887776
No 205
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=43.12 E-value=2.8e+02 Score=29.02 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE------EeCCCCHHHHHHHHHHHHH
Q 007601 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY------L~KPl~~eeL~~~l~~vlr 151 (596)
.++.++++++.-++|||...+-.+.+.+.+.+..||+.. +..|.-..++++-+.+.+.
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred cHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 367788887666899999999999999999999998643 3345444455554444443
No 206
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=42.69 E-value=1.1e+02 Score=31.17 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=43.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~--V~-~a~sg~eALe~L~e~--~~~pDLVLlDI~ 88 (596)
+..-+|.-+|-++...+..+..++..++. +. ...++.+.+..+... ...||+|++|..
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 44458999999999999999999887653 33 456777777665433 236999999974
No 207
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.61 E-value=3e+02 Score=29.43 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=55.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC-----CC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 007601 35 RVLVVDDDITCLRILEQMLRRC-----LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~-----~y-~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ip 108 (596)
-|||=|.+-...-.+...++.. .. ....+.+.+++.+.+.. .+|+|++|=.-|+ ++.+.++....-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe----~l~~av~~~~~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD----MMREAVRVTAGRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH----HHHHHHHhhcCCe
Confidence 4777676665544444444322 12 23578899999999864 4899999943332 2333332212223
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCe
Q 007601 109 VIMMSADGRVSAVMRGIRHGACD 131 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~D 131 (596)
+|-.|+--..+.+.+-.+.|++-
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDR 273 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCE
Confidence 56678877888887777888764
No 208
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=42.55 E-value=2.2e+02 Score=32.28 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=63.5
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 007601 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (596)
Q Consensus 32 ~girVLIVDDd----~~i~~~L~~lL~~~-~y--~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd------------m 92 (596)
.+.+++++|.. ..+.+.++.+-+.+ +. .+..+.+.++|..+++. ..|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECC-CCCccccceeecCCCc
Confidence 46789999864 23344444444443 22 34577788888888764 378776432 121 1
Q ss_pred CHHHHHHHHh---ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 93 dGleLl~~Ir---~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.-++++..++ ....+|||.=-+-.....+.+|+.+||+-...=
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 1244555443 234688888778888999999999999976553
No 209
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.42 E-value=2.8e+02 Score=28.21 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHH-cCCCeEEe------
Q 007601 67 AVALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR-HGACDYLI------ 134 (596)
Q Consensus 67 ~eALe~L~e~~~~pD-LVLlDI~----MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~-~GA~DYL~------ 134 (596)
.+..+.+.+. .++ ++++|+. +.+.| +++++++++...+|||.--+-.+.+...++++ .|++..+.
T Consensus 156 ~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEEL--GAGEILLTSMDRDGTKNGYD-LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHc--CCCEEEEcCCcCCCCCCCcC-HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3444444443 355 6776654 22333 77888887667899999998899999999997 49988766
Q ss_pred CCCCHHHHHHHHH
Q 007601 135 KPIREEELKNIWQ 147 (596)
Q Consensus 135 KPl~~eeL~~~l~ 147 (596)
.-++.++++..++
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T PRK02083 233 GEITIGELKAYLA 245 (253)
T ss_pred CCCCHHHHHHHHH
Confidence 3356666655543
No 210
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=42.39 E-value=3e+02 Score=29.31 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----CCe--E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cC
Q 007601 35 RVLVVDDDITCLRILEQMLRRC----LYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EM 105 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~----~y~--V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~--~~ 105 (596)
-|||=|.+-...-.++..+++. +|. + ..+.+.+++.+++.. .+|+|++|-.-| -++-+.++. ..
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~----e~~~~av~~l~~~ 232 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSP----EELKEAVKLLGLA 232 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCH----HHHHHHHHHhccC
Confidence 3677677766665577777653 432 2 478999999999875 389999994333 233333322 23
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCe
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACD 131 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~D 131 (596)
.-.++=.|+--..+.+.+.-..|++-
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tGVD~ 258 (280)
T COG0157 233 GRALLEASGGITLENIREYAETGVDV 258 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcCCCE
Confidence 33344478877888777777888764
No 211
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=42.23 E-value=1.7e+02 Score=28.18 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=49.6
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdm-------dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
.+|.+.+++.++.+. .+|.|++--..|-. -|++.++++.....+||+.+-+-+ .+.+.++.+.|+++.-
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 489999997666533 48999998776532 389999998777779999998764 4456788899998864
No 212
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=42.12 E-value=1e+02 Score=23.15 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHHHHHhccccccHHHHHHHhcCCCCChHHHHHHHHHH
Q 007601 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKF 271 (596)
Q Consensus 223 v~wt~eLh~~F~~av~~Lgl~ka~pK~ILe~m~v~gltre~taSHLqRv 271 (596)
..|+.+-...|.+++...|.+ .-+.|...|. .+-|..++.+|-++|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhh
Confidence 469999999999999999966 3467777766 466777788876654
No 213
>PRK13566 anthranilate synthase; Provisional
Probab=42.11 E-value=56 Score=39.02 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=50.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe-C-CCCC-CCHHHHHHHHhccC
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPD-MDGFKLLEHIGLEM 105 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlD-I-~MPd-mdGleLl~~Ir~~~ 105 (596)
....+.+|+|||........+.++|++.+++|..+..... .+.+... .||.||+- = ..|. .+-.++++++. ..
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~ 597 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAAL-AR 597 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHH-HC
Confidence 4456789999999988899999999999998876655432 2233222 48987762 1 1121 12234444432 34
Q ss_pred CCCEEEE
Q 007601 106 DLPVIMM 112 (596)
Q Consensus 106 ~ipVIll 112 (596)
++||+=+
T Consensus 598 ~iPILGI 604 (720)
T PRK13566 598 NLPIFGV 604 (720)
T ss_pred CCcEEEE
Confidence 6888754
No 214
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=41.86 E-value=76 Score=30.94 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=56.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 007601 36 VLVVDDDITCLRILEQMLRRC------LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~------~y-~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ip 108 (596)
|||=|.+-.+.-.+...++.. .. ....+++.+|+.+.++. .+|+|.+|-.-|+ +=-++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~-~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPE-DLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHH-HHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHH-HHHHHHHHHhhcCCcE
Confidence 566555555444455544432 22 33578999999998875 3899999965442 2223344444333336
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
.|..++--+.+.+.+-.+.|++.+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 7778887788888887889976553
No 215
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=41.84 E-value=2.7e+02 Score=29.24 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=47.1
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
...+.+.+++.+.++. ..|.|.+|-.-|+ +--++++.++.. +++|++..-+ -+.+.+.+..+.|++.+..
T Consensus 187 gVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~i~i~AsGG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 187 VVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPPVLLAAAGG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCCceEEEECC-CCHHHHHHHHHcCCcEEEE
Confidence 4578899999888743 4899999965553 112344445433 4677665544 4677788888999987643
No 216
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.05 E-value=1.3e+02 Score=31.81 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=57.3
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------------HHhcCCCceEEEEeCCCCCCCHH
Q 007601 34 LRVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------------LRERKGCFDVVLSDVHMPDMDGF 95 (596)
Q Consensus 34 irVLIV--DDd~~i~---~~L~~lL~~~~y~V~~a~sg~eALe~-------------L~e~~~~pDLVLlDI~MPdmdGl 95 (596)
|+|.|+ -+.+... +.+...|++.++++.........+.. .....+.+|+||+ -+.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 466776 3334444 44455555667777654432222210 0111123677666 367773
Q ss_pred HHHHHHhc--cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 96 KLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 96 eLl~~Ir~--~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
+++..+. ...+||+=+- .|-.+||. .++.+++..++.+++++..
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 3333332 3478888543 35567777 5788999999999987653
No 217
>PRK07695 transcriptional regulator TenI; Provisional
Probab=40.83 E-value=2.7e+02 Score=27.27 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=48.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-------mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
++.+.+++.+..+ . ..|.|++.-..|. ..|++.++++.....+||+.+-+- +.+.+.++++.|++..
T Consensus 101 s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 5677777665443 2 4898887653332 236788888866567999988777 7788889999999876
No 218
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=40.14 E-value=3.6e+02 Score=27.48 Aligned_cols=109 Identities=23% Similarity=0.294 Sum_probs=61.6
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 007601 33 GLRVLVVDDDI---TCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (596)
Q Consensus 33 girVLIVDDd~---~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i 107 (596)
.++++|+-+.+ ...+.+...+++.+. .|......++..+.+.. .|++++=-.-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 35666665432 233333344443322 23333333334444432 56666533234445667777773 567
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|||. |..+. ..+.+..+.++|+..+-+.+++..++..++.
T Consensus 290 PvI~-~~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIA-SDHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEE-cCCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 8875 33333 3455677779999999999999999865543
No 219
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=39.84 E-value=2.3e+02 Score=29.27 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=43.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 80 pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.|++++=.. .+.-|+.+++.+. ..+|||.. ..+. ..+.+..|.++|+.+|-+.+++...+..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA--CGVPVVAS-NAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH--cCCCEEEe-CCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466655332 2334666677663 46788863 3332 3566778889999999999999998887764
No 220
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=39.81 E-value=2.4e+02 Score=28.07 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=51.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC---------CCHHHHHHHHhc--cCCCCEEEEcCCCCHHHHHH---HHHcCCC
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR---GIRHGAC 130 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPd---------mdGleLl~~Ir~--~~~ipVIllTa~~d~~~~~e---Al~~GA~ 130 (596)
+..+.++.+... .+|.|++|++=.. .+-.+++..++. .....+++.....+.....+ +++.|++
T Consensus 9 ~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 9 NSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGAD 86 (221)
T ss_dssp TSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCC
Confidence 344455555544 4999999986533 222233444432 23457888777777767777 9999999
Q ss_pred eEEeCCC-CHHHHHHHHHHH
Q 007601 131 DYLIKPI-REEELKNIWQHV 149 (596)
Q Consensus 131 DYL~KPl-~~eeL~~~l~~v 149 (596)
+.+.--+ +.++++.+++.+
T Consensus 87 gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 87 GIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp EEEETT--SHHHHHHHHHHH
T ss_pred eeeccccCcHHHHHHHHHHH
Confidence 9876544 677777766654
No 221
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=39.60 E-value=1.1e+02 Score=29.76 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=35.5
Q ss_pred ceEEEEeCCCCCCC-------HHHHHHHHhcc-----CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 80 FDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 80 pDLVLlDI~MPdmd-------GleLl~~Ir~~-----~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+|.++++-..|+.+ +++.++++++. +++||++.-+-. .+.+.++.+.||+.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 68887776555433 34445555422 247877665554 477888899999988764
No 222
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=39.34 E-value=25 Score=33.17 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCC
Q 007601 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (596)
Q Consensus 66 g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~ 115 (596)
..++++.++.. .+|+||+|. ++..- .....++ ..+..||+.|..
T Consensus 80 ~~~~~~~~~~~--~~D~iiIDt--aG~~~-~~~~~~~-~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDAA--GFDVIIVET--VGVGQ-SEVDIAS-MADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHhc--CCCEEEEEC--CccCh-hhhhHHH-hCCEEEEEECCC
Confidence 34566666543 599999998 66442 2223332 345567777665
No 223
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=39.24 E-value=10 Score=37.73 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 265 aSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
-.|+.||...+..| |..++++.+- .+.|+.+||+.|.
T Consensus 19 ~~H~l~V~~~A~~L---A~~y~~d~~k---A~~AgilHD~aK~ 55 (187)
T COG1713 19 FEHCLGVAETAIEL---AEAYGLDPEK---AYLAGILHDIAKE 55 (187)
T ss_pred HHHHHHHHHHHHHH---HHHhCCCHHH---HHHHHHHHHHHhh
Confidence 46999999999999 9999988776 5567889999987
No 224
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=39.13 E-value=2.9e+02 Score=29.41 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=38.3
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeE-----EEECCHHHHHHHHHhcCCCceEEEE
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNV-----TTCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y~V-----~~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
.|..+-|||=+|-|+..++.=-.+-++.+..+ ..-.-++...+++++.+ ||++++
T Consensus 100 ~f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 159 (283)
T TIGR02855 100 YFGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVI 159 (283)
T ss_pred cCCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEE
Confidence 45556699999999988776666666655443 33444556667777765 998876
No 225
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.10 E-value=2.5e+02 Score=31.04 Aligned_cols=90 Identities=13% Similarity=0.021 Sum_probs=53.0
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC-CCCCCH--HHHHHHHhc--cC
Q 007601 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-MPDMDG--FKLLEHIGL--EM 105 (596)
Q Consensus 34 irVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~-MPdmdG--leLl~~Ir~--~~ 105 (596)
.+|.+|..|.. -.+.++.+-+..+..+..+.+..+....+.+.. ++|+||+|.- +...|. .+.+..+.. .+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47888877664 345555555666777777777666656565443 5899999974 332332 233444422 12
Q ss_pred CCCEEEEcCCCCHHHHHHH
Q 007601 106 DLPVIMMSADGRVSAVMRG 124 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eA 124 (596)
.-.++++++....+...+.
T Consensus 247 ~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 247 VQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred CeEEEEecCccChHHHHHH
Confidence 2347778777766554433
No 226
>PLN02591 tryptophan synthase
Probab=39.09 E-value=4.6e+02 Score=27.20 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=63.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEE-E-CC-HHHHHHHHHhcCCCceEEEEeCCCCC------CCHHHHHHHHhccC
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTT-C-SQ-AAVALDILRERKGCFDVVLSDVHMPD------MDGFKLLEHIGLEM 105 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~-a-~s-g~eALe~L~e~~~~pDLVLlDI~MPd------mdGleLl~~Ir~~~ 105 (596)
-|+|.|-..+-...+...+++.+..... + .+ .++=++.+.+....|=-++.=.--.+ .+-.++++++|+..
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~ 188 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT 188 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC
Confidence 3666676666666777777777765442 2 22 23334445444322222221110011 12345577888777
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
++||++=.+-.+.+.+.++.++||++.+.-.
T Consensus 189 ~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 189 DKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 9999998888889999999999999999875
No 227
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.05 E-value=1.2e+02 Score=31.91 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=34.5
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHH---HhcCCCceEEEEeCC
Q 007601 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDIL---RERKGCFDVVLSDVH 88 (596)
Q Consensus 33 girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~sg~eALe~L---~e~~~~pDLVLlDI~ 88 (596)
+.+|.+++-|.. ....++...+..++.+..+.+..+..+.+ ... .++|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 467888877653 34444555555678887777765444443 332 25899999973
No 228
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=38.97 E-value=2.5e+02 Score=31.57 Aligned_cols=86 Identities=23% Similarity=0.270 Sum_probs=45.4
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHhcCCCceEEEEeCC--CC-CCCHHHHH
Q 007601 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDVH--MP-DMDGFKLL 98 (596)
Q Consensus 32 ~girVLIVDDd~---~i~~~L~~lL~~~~y~V~~a~---sg~----eALe~L~e~~~~pDLVLlDI~--MP-dmdGleLl 98 (596)
.+.+|++||-|. ...+.++.+-+..+..+..+. +.. ++++.+... .+|+||+|.- ++ +.+.++-+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTaGr~~~d~~l~~eL 204 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTAGRLQIDEELMEEL 204 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccccCHHHHHHH
Confidence 367999999984 334445555555555555443 332 333443333 4999999983 22 22344444
Q ss_pred HHHhc--cCCCCEEEEcCCCCHH
Q 007601 99 EHIGL--EMDLPVIMMSADGRVS 119 (596)
Q Consensus 99 ~~Ir~--~~~ipVIllTa~~d~~ 119 (596)
..+.. .++-.++++.+....+
T Consensus 205 ~~i~~~~~p~e~lLVvda~tgq~ 227 (428)
T TIGR00959 205 AAIKEILNPDEILLVVDAMTGQD 227 (428)
T ss_pred HHHHHhhCCceEEEEEeccchHH
Confidence 44432 2333355555544433
No 229
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=38.97 E-value=3.3e+02 Score=26.72 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=44.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~--V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
+|..||.++...+.+++-++..++. +. ...+..+++..+......+|+|++|--.....--++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999888876542 32 44555555544332222389999997554433445566663
No 230
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.76 E-value=3.7e+02 Score=27.41 Aligned_cols=89 Identities=6% Similarity=-0.048 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEEeCCCCCC------CHHHHHHHHhcc-CCCCEEEEcC
Q 007601 45 CLRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHIGLE-MDLPVIMMSA 114 (596)
Q Consensus 45 i~~~L~~lL~~~~y~V~~a~sg---~eALe~L~e~~~~pDLVLlDI~MPdm------dGleLl~~Ir~~-~~ipVIllTa 114 (596)
....+...+++.+..+..+-+. .+.++.+.... ..++++ -.+|+. +-.+.++++|+. +..||++=.+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 3445666667777665533333 33444433332 466666 455542 223455666543 3567766555
Q ss_pred CCCHHHHHHHHHcCCCeEEeCC
Q 007601 115 DGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 115 ~~d~~~~~eAl~~GA~DYL~KP 136 (596)
-.+.+.+.++.+.||+.++.=.
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 5577888888899999999864
No 231
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.69 E-value=3.7e+02 Score=28.68 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=56.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--C-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 007601 35 RVLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~----~~--y-~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i 107 (596)
-|||=|.+-...-.+...++. .. . ....+.+.+++.+.+.. .+|+|++|=.-|+ +--+.++.++ .-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe-~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE-QIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhc---Cc
Confidence 477777776555445555443 23 2 23478999999999864 4899999943332 1222333332 22
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCe
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACD 131 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~D 131 (596)
.++-.|+--..+.+.+-...|+|-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDY 265 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCE
Confidence 356678878888887777888764
No 232
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=38.65 E-value=4e+02 Score=26.36 Aligned_cols=68 Identities=12% Similarity=0.221 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVLlDI~MPdm---dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
+..+..+.+.+.. ++ ++++|+...+. --+++++++++.-.+|||.-.+-.+.+.+.++++.||++.+.
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555555432 44 66777754321 237888888776789999999889999899999999999765
No 233
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=38.64 E-value=2e+02 Score=28.80 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=51.7
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE-EcCCCCHHHHHHHHHcCCCeEEeCCC
Q 007601 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGACDYLIKPI 137 (596)
Q Consensus 59 ~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl-lTa~~d~~~~~eAl~~GA~DYL~KPl 137 (596)
-|....+.+++++.++.-- .-.+=++.+.+-.-++++.++.+++....++++ .-.--+.+.+..++++||+ |+.=|.
T Consensus 14 ~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~-fivsp~ 91 (206)
T PRK09140 14 AILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGR-LIVTPN 91 (206)
T ss_pred EEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCC-EEECCC
Confidence 4556667777777665321 123335667777778899999886443334332 2233456778899999995 555575
Q ss_pred CHHHHHHH
Q 007601 138 REEELKNI 145 (596)
Q Consensus 138 ~~eeL~~~ 145 (596)
...++.+.
T Consensus 92 ~~~~v~~~ 99 (206)
T PRK09140 92 TDPEVIRR 99 (206)
T ss_pred CCHHHHHH
Confidence 44455443
No 234
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.57 E-value=3.1e+02 Score=29.06 Aligned_cols=90 Identities=18% Similarity=0.076 Sum_probs=54.4
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--C-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 007601 36 VLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~----~~--y-~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ip 108 (596)
|||=|.|-...-.+...++. .. . ....+.+.+++.+.++. .+|+|++|-.-| -++-+.++......
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~----e~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTP----DTLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCH----HHHHHHHHHhCCCc
Confidence 55555554443334444432 22 2 23578999999999864 489999994333 23333333222223
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DY 132 (596)
++..|+--+.+.+.+-.+.|++-.
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCEE
Confidence 477888888888888778887643
No 235
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=37.94 E-value=3.9e+02 Score=28.69 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=58.3
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC------------CC
Q 007601 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP------------DM 92 (596)
Q Consensus 32 ~girVLIVDD----d~~i~~~L~~lL~~~~-y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MP------------dm 92 (596)
.+.+++++|- .+...+.++.+-+... ..|. .+.+.+.|..+++. ..|.|.+.+ -| +.
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCC
Confidence 3567787763 2334444444433332 3332 46777888777653 478887632 11 11
Q ss_pred CHHHHHHHHh---ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 93 dGleLl~~Ir---~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
.-+.++..+. ....+|||.--+-.+...+.+++.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 1233333332 23468988766777888999999999998765
No 236
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=37.60 E-value=19 Score=43.56 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 007601 264 VASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 264 taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
+..|+..+...++.+ |...|+ +......+.+.-|||+||..-
T Consensus 676 L~eHl~~va~lA~~f---a~~~gl-~~~~~~~~laGllHDlGK~~~ 717 (844)
T TIGR02621 676 LSDHLDNVFEVAKNF---VAKLGL-GDLDKAVRQAARLHDLGKQRP 717 (844)
T ss_pred HHHHHHHHHHHHHHH---HHHcCc-hHHHHHHHHHHHhcccccCCH
Confidence 888999999999999 888887 333334567788999999974
No 237
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=37.59 E-value=5.3e+02 Score=28.58 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=47.3
Q ss_pred CceEEEEeCCC----CCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHH
Q 007601 79 CFDVVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHV 149 (596)
Q Consensus 79 ~pDLVLlDI~M----PdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~-----KPl~~eeL~~~l~~v 149 (596)
..|.|.+..-. ....+++.+++++...++||++.-+- ..+...++++.||+.+.. +.-++.+....++..
T Consensus 131 GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~ 209 (430)
T PRK07028 131 GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREA 209 (430)
T ss_pred CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHH
Confidence 37887665321 12467888888876556899887765 567788899999997644 333445555445444
Q ss_pred HHh
Q 007601 150 VRK 152 (596)
Q Consensus 150 lrk 152 (596)
+++
T Consensus 210 i~~ 212 (430)
T PRK07028 210 IDS 212 (430)
T ss_pred Hhc
Confidence 443
No 238
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.48 E-value=89 Score=31.82 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCCEEEEcCC------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHH
Q 007601 106 DLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (596)
Q Consensus 106 ~ipVIllTa~------~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~ 145 (596)
.+|||+|+-+ .+..++..+-+.||++|+.-.+.++|-...
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~ 140 (268)
T KOG4175|consen 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETL 140 (268)
T ss_pred ccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHH
Confidence 5799998754 467788888999999999998888886553
No 239
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=37.09 E-value=3e+02 Score=27.21 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=45.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe--CCCCHHHHHHHHHHH
Q 007601 82 VVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 149 (596)
Q Consensus 82 LVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~--KPl~~eeL~~~l~~v 149 (596)
|-++|...--...++.++.++...++||++...-.+...+..+++.||+..++ .-+..+++...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 33444444333457888888766789999876555666788899999999873 224445666655554
No 240
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.74 E-value=5.4e+02 Score=27.31 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHH--H--HHHHHHHh----CCC---eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 007601 35 RVLVVDDDITCL--R--ILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (596)
Q Consensus 35 rVLIVDDd~~i~--~--~L~~lL~~----~~y---~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~ 103 (596)
.|||=|.+-... - .+...++. ..+ ....+.+.+++.+.+.. .+|+|++|=.-| -++.+.+..
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~----e~l~~av~~ 233 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSL----DDLREGVEL 233 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCH----HHHHHHHHH
Confidence 477777775542 1 24444433 332 23589999999998864 489999994333 233333322
Q ss_pred cCCCCEEEEcCCCCHHHHHHHHHcCCCe
Q 007601 104 EMDLPVIMMSADGRVSAVMRGIRHGACD 131 (596)
Q Consensus 104 ~~~ipVIllTa~~d~~~~~eAl~~GA~D 131 (596)
.....+|-.|+--..+.+.+-...|+|-
T Consensus 234 ~~~~~~leaSGgI~~~ni~~yA~tGVD~ 261 (281)
T PRK06543 234 VDGRAIVEASGNVNLNTVGAIASTGVDV 261 (281)
T ss_pred hCCCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 1222367788888888888877888764
No 241
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=36.69 E-value=4.9e+02 Score=28.66 Aligned_cols=110 Identities=18% Similarity=0.136 Sum_probs=65.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~-V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~-Ir~~~~ipVI 110 (596)
-+|..+|=++...+.++.-++..+.. + ....++.+.+.. . ..||+|++|- |+ .+.+++.. ++....-.+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~--~~fD~V~lDP--~G-s~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E--RKFDVVDIDP--FG-SPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c--CCCCEEEECC--CC-CcHHHHHHHHHHhcCCCEE
Confidence 47999999999999999888765443 2 344455444422 2 2599999996 43 34567666 5544455788
Q ss_pred EEcCCCCHHH----HHHHH-HcCCCeEEeCC-C-CHHHHHHHHHHHHHh
Q 007601 111 MMSADGRVSA----VMRGI-RHGACDYLIKP-I-REEELKNIWQHVVRK 152 (596)
Q Consensus 111 llTa~~d~~~----~~eAl-~~GA~DYL~KP-l-~~eeL~~~l~~vlrk 152 (596)
.+|+.+-... ..+++ .+|+ |-.|. + ...-|+-++..+.|.
T Consensus 155 yvSAtD~~~L~g~y~~~~~~~yd~--fP~~~~~~~E~glRill~~i~r~ 201 (382)
T PRK04338 155 CVTATDTAPLCGAYPKSCLRKYGA--VPLKTEFYHEMGLRILIGYIARE 201 (382)
T ss_pred EEEecCchhhcCCChHHHHHHhcC--cccCCcchhHHHHHHHHHHHHHH
Confidence 8887664432 22333 4444 33343 2 333345555555543
No 242
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=36.51 E-value=3.5e+02 Score=29.13 Aligned_cols=96 Identities=15% Similarity=0.048 Sum_probs=55.2
Q ss_pred EEEEeCCHHHHHHHHHHHH-------hCCC---eEEEECCHHHHHHHHHh---cCCCceEEEEeCC--CCC---CCHHHH
Q 007601 36 VLVVDDDITCLRILEQMLR-------RCLY---NVTTCSQAAVALDILRE---RKGCFDVVLSDVH--MPD---MDGFKL 97 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~-------~~~y---~V~~a~sg~eALe~L~e---~~~~pDLVLlDI~--MPd---mdGleL 97 (596)
|||=|.+-...-.+...++ ...+ ....+.+.+++.+.+.. ....+|+|++|=. -|+ .+--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 6766666544433333332 2222 23478899999998861 1124899999954 122 133333
Q ss_pred HHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCe
Q 007601 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD 131 (596)
Q Consensus 98 l~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~D 131 (596)
.+.++.......|-.|+--..+.+.+-...|++-
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCE
Confidence 3333322222346678878888887777888764
No 243
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=36.49 E-value=3.1e+02 Score=29.25 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHH
Q 007601 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (596)
Q Consensus 66 g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~ 145 (596)
.++..+.+.. .|+.++ ...++.-|+.+++.+. ..+|||. |..+. ..+.+..|.++++..|.+.++|.+.
T Consensus 291 ~~~~~~~l~~----adv~v~-~s~~e~~~~~llEAmA--~G~PVIa-s~~~g---~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 291 YDQYLALLQV----SDVHVY-LTYPFVLSWSLLEAMA--CGCLVVG-SDTAP---VREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred HHHHHHHHHh----CcEEEE-cCcccccchHHHHHHH--CCCCEEE-cCCCC---chhhcccCCceEEcCCCCHHHHHHH
Confidence 3455555543 455554 2235555667777763 5678886 33332 3456677889999999999999999
Q ss_pred HHHHHH
Q 007601 146 WQHVVR 151 (596)
Q Consensus 146 l~~vlr 151 (596)
+..++.
T Consensus 360 i~~ll~ 365 (396)
T cd03818 360 VIELLD 365 (396)
T ss_pred HHHHHh
Confidence 998875
No 244
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.29 E-value=33 Score=39.92 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=9.0
Q ss_pred cccccCCCCCcccCCCCchhhHHH
Q 007601 374 AVASTSNLGGLNPQNGNMLMDILH 397 (596)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~ 397 (596)
+++-+++ ||-++|.-+-|++-.|
T Consensus 49 ~~~~~~~-~~~~~~~~~~~~~~~~ 71 (1179)
T KOG3648|consen 49 FVGQAGG-GGPAGQQLPQLLQSSQ 71 (1179)
T ss_pred hccccCC-CCchhhhhHHHHHHHH
Confidence 4444433 2223344344444333
No 245
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=35.86 E-value=45 Score=32.54 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=45.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe-CCC-CCCCH--HHHHHHHhccCCCCEEE
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-VHM-PDMDG--FKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlD-I~M-PdmdG--leLl~~Ir~~~~ipVIl 111 (596)
|||||....+-..+..+|+..+++|....+..--++.++.. .||.||+- =-| |..++ ..+++.+ ...+||+=
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999888887666543223334333 37766652 222 22232 2344433 24678775
Q ss_pred E
Q 007601 112 M 112 (596)
Q Consensus 112 l 112 (596)
+
T Consensus 78 I 78 (191)
T PRK06774 78 V 78 (191)
T ss_pred E
Confidence 4
No 246
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=35.66 E-value=1.3e+02 Score=30.85 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=41.8
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHh-cCCCceEEEEeCCCC
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRE-RKGCFDVVLSDVHMP 90 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y~--V~~a~sg~eALe~L~e-~~~~pDLVLlDI~MP 90 (596)
..|..-++.-||-++...+.-++.+++.++. |..... -++++.+.. ....||+||+|..=+
T Consensus 80 ~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 80 ALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred hCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChh
Confidence 3443449999999999999999999998653 333331 344444443 234699999998543
No 247
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.62 E-value=2.7e+02 Score=33.73 Aligned_cols=115 Identities=15% Similarity=0.026 Sum_probs=65.1
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCC-CHHHHHHHHh--ccC
Q 007601 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDM-DGFKLLEHIG--LEM 105 (596)
Q Consensus 34 irVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~--MPdm-dGleLl~~Ir--~~~ 105 (596)
.+|.+|+-|.. ..+.++.+-+..+..+..+.+..+..+.++... ++|+||+|.- ++.. .-.+.+..+. ..+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 58888877753 335555555566767777778888877777654 6899999973 2211 2233344432 123
Q ss_pred CCCEEEEcCCCCHHHH---HHHHHc----CCCeEE-eCCCCHHHHHHHHHHH
Q 007601 106 DLPVIMMSADGRVSAV---MRGIRH----GACDYL-IKPIREEELKNIWQHV 149 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~---~eAl~~----GA~DYL-~KPl~~eeL~~~l~~v 149 (596)
.-.++++++....+.. .+.|+. +.+++| +|=-....+-.++.-+
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~ 346 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTV 346 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHH
Confidence 4456667666554443 355543 566664 4433333333444433
No 248
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=35.60 E-value=2.9e+02 Score=29.54 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=53.0
Q ss_pred HHHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEeC-CCCC-----C-CHHHHHHHHhccCCCCEEEEcCCCCHHHHHH
Q 007601 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-HMPD-----M-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (596)
Q Consensus 52 lL~~~~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI-~MPd-----m-dGleLl~~Ir~~~~ipVIllTa~~d~~~~~e 123 (596)
.++..+..| ..+.+.++|...++. .+|.|++-= .--+ . +-+.|+..++...++|||.--+-.+...+..
T Consensus 131 ~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaa 207 (330)
T PF03060_consen 131 RLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAA 207 (330)
T ss_dssp HHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHH
T ss_pred HHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHH
Confidence 344445444 589999999887764 389888752 2212 2 2466777777667799999888889988999
Q ss_pred HHHcCCCeEEeC
Q 007601 124 GIRHGACDYLIK 135 (596)
Q Consensus 124 Al~~GA~DYL~K 135 (596)
++.+||++...=
T Consensus 208 al~lGA~gV~~G 219 (330)
T PF03060_consen 208 ALALGADGVQMG 219 (330)
T ss_dssp HHHCT-SEEEES
T ss_pred HHHcCCCEeecC
Confidence 999999998764
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.49 E-value=3.9e+02 Score=29.58 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=55.3
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHH---HHHHHhc
Q 007601 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFK---LLEHIGL 103 (596)
Q Consensus 32 ~girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~--MPdmdGle---Ll~~Ir~ 103 (596)
.+.+|.+|+-|+- ..+.++.+.+..+..+..+.+..+..+.+.... ++|+||+|.- ++ .|-.. +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~-~~DlVLIDTaGr~~-~~~~~l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK-DFDLVLVDTIGKSP-KDFMKLAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC-CCCEEEEcCCCCCc-cCHHHHHHHHHHHHh
Confidence 3578999988863 223344444445677777777777766666553 6999999984 33 23322 2222222
Q ss_pred -cCC-CCEEEEcCCCCHHHHHHHH
Q 007601 104 -EMD-LPVIMMSADGRVSAVMRGI 125 (596)
Q Consensus 104 -~~~-ipVIllTa~~d~~~~~eAl 125 (596)
.+. -.++++++........+.+
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHH
Confidence 223 3567788877766666555
No 250
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.06 E-value=4e+02 Score=29.75 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=62.9
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 007601 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (596)
Q Consensus 32 ~girVLIVDDd----~~i~~~L~~lL~~~-~y~--V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd------------m 92 (596)
++..|+++|-- ..+.+.++.+=+.+ +.. +.-+.+.++|..+++. ..|.|..-+. |+ .
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g-~Gs~c~tr~~~g~g~ 239 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIG-PGSICTTRIVAGVGV 239 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCC-CCcCCcceeecCCCC
Confidence 57788888752 23333333332233 222 3357888899888764 3888875431 11 1
Q ss_pred CHHHHH---HHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 93 DGFKLL---EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 93 dGleLl---~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.-+..+ ..+.....+|||.=-+......+.+|+.+||+....=
T Consensus 240 p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 240 PQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred ChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 123333 3333345789999888889999999999999987664
No 251
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=35.03 E-value=3.4e+02 Score=26.29 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=36.9
Q ss_pred CHHHHHHHHhccCCCCEEE-EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 007601 93 DGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (596)
Q Consensus 93 dGleLl~~Ir~~~~ipVIl-lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l 146 (596)
-|++.+++|+.....|+.+ +...+....+..+.+.|++....-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 5889999998656667622 44445566777888999998777654444444444
No 252
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.91 E-value=4.1e+02 Score=27.81 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=72.3
Q ss_pred CccEEEEEeCCHHH----HHHH--HHHHHhCCCeEEEECCHHHHH-HHHHhcCCCceEEEEeCCCCCCCH-----HHHHH
Q 007601 32 AGLRVLVVDDDITC----LRIL--EQMLRRCLYNVTTCSQAAVAL-DILRERKGCFDVVLSDVHMPDMDG-----FKLLE 99 (596)
Q Consensus 32 ~girVLIVDDd~~i----~~~L--~~lL~~~~y~V~~a~sg~eAL-e~L~e~~~~pDLVLlDI~MPdmdG-----leLl~ 99 (596)
..+|+=|+-|+... .+.+ .+.|-+.||.|..+.+..-.+ +.|++-. . ..++-+--|=.+| -..++
T Consensus 99 ~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~G--c-aavMPl~aPIGSg~G~~n~~~l~ 175 (262)
T COG2022 99 NWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAG--C-AAVMPLGAPIGSGLGLQNPYNLE 175 (262)
T ss_pred CeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcC--c-eEeccccccccCCcCcCCHHHHH
Confidence 35777777665322 2222 233445599998554433222 2333322 2 2233333332333 23456
Q ss_pred HHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHH
Q 007601 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (596)
Q Consensus 100 ~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP-----l~~eeL~~~l~~vlr 151 (596)
.|++..++|||+=.+-+....+..+++.|++..|.-. -++-.+.+++..++.
T Consensus 176 iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 176 IIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 6666679999999999999999999999999998764 366667777777664
No 253
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=34.64 E-value=1.1e+02 Score=32.13 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=36.4
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 007601 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 33 girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI 87 (596)
+.+|.+|+-|+- ..+.+..+-+..+..+..+.+..+..+.+.... ++|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 378999988873 233444444444666666777777777776654 589999995
No 254
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=34.50 E-value=2.4e+02 Score=28.44 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=51.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPd-mdG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+..+..+.+.... ..+|++|+.--+ +.| +++++++.....+|||.=-+-...+.+.++.+.||+..+.-
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivg 213 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVA 213 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEh
Confidence 4444555554432 479999997643 233 78899997667899998888889999989889999987763
No 255
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=34.21 E-value=2.3e+02 Score=28.53 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=52.2
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pD-LVLlDI~MPd---mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
..+..+..+.+.+.. +| |+++|+.-.+ ..-+++++++++...+||++--+-.+.+.+.+.+..|++..+.=
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 347777777776653 55 8888887421 22367888887767799999999899999999999998766543
No 256
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=33.92 E-value=1.2e+02 Score=30.23 Aligned_cols=56 Identities=29% Similarity=0.320 Sum_probs=39.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVT-TCSQAAVALDILRERKGCFDVVLSDVHM 89 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~--y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~M 89 (596)
.-++++||-|......+++-++..+ -.+. ...++..++..+... +.||+|++|-=-
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDPPy 124 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDPPY 124 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCCCC
Confidence 3579999999999999999988765 2332 344555666555443 249999999533
No 257
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=33.90 E-value=1.7e+02 Score=31.44 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEeCC--CCCC-CHHHH
Q 007601 31 PAGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVH--MPDM-DGFKL 97 (596)
Q Consensus 31 p~girVLIVDDd~~i~---~~L~~lL~~~~y~V~~a~---sg----~eALe~L~e~~~~pDLVLlDI~--MPdm-dGleL 97 (596)
+.+.+|+|+|-|..-. +.++..-...+..+.... +. .+++..... ..+|+||+|.- ++.. +-++-
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTaGr~~~~~~l~~e 217 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTAGRLHNKTNLMEE 217 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCCCCCcCCHHHHHH
Confidence 3467999999886322 233333444455544332 22 233333223 35999999984 4422 22233
Q ss_pred HHHHhc--------cCCCCEEEEcCCCCHHHHHHHH
Q 007601 98 LEHIGL--------EMDLPVIMMSADGRVSAVMRGI 125 (596)
Q Consensus 98 l~~Ir~--------~~~ipVIllTa~~d~~~~~eAl 125 (596)
++++.. .++-.+.++.+....+...++.
T Consensus 218 L~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~ 253 (318)
T PRK10416 218 LKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK 253 (318)
T ss_pred HHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHH
Confidence 333321 1333456666665554444443
No 258
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=33.82 E-value=1.6e+02 Score=28.59 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=57.1
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-C----CCHHHHHHHHh---ccCCCCEEEEcCCCCH
Q 007601 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (596)
Q Consensus 49 L~~lL~~~~y~V~~--a~sg~eALe~L~e~~~~pDLVLlDI~MP-d----mdGleLl~~Ir---~~~~ipVIllTa~~d~ 118 (596)
....|+..|+.+.. +..+...++.+.... ||.|-+|..+. + .....+++.+. ...+++|| .++-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCCH
Confidence 44445566887764 456666677777654 99999997543 2 23355666552 23455554 6777888
Q ss_pred HHHHHHHHcCCCe----EEeCCCCH
Q 007601 119 SAVMRGIRHGACD----YLIKPIRE 139 (596)
Q Consensus 119 ~~~~eAl~~GA~D----YL~KPl~~ 139 (596)
+....+.+.|++. |+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 8888888999953 56777654
No 259
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.52 E-value=2.6e+02 Score=28.12 Aligned_cols=80 Identities=9% Similarity=0.158 Sum_probs=41.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC-CCHH
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-IREE 140 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP-l~~e 140 (596)
...+.+++++..+.-. .--+=.+.+.|-.-+.++.++++++...--+|=.-.--+.+.+.++++.||. |+.-| ++.+
T Consensus 11 r~~~~~~a~~ia~al~-~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~ 88 (201)
T PRK06015 11 LIDDVEHAVPLARALA-AGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQE 88 (201)
T ss_pred EcCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHH
Confidence 3445555554443211 0122244555555567888888753322112223333467778889999986 55556 4444
Q ss_pred HHH
Q 007601 141 ELK 143 (596)
Q Consensus 141 eL~ 143 (596)
-+.
T Consensus 89 vi~ 91 (201)
T PRK06015 89 LLA 91 (201)
T ss_pred HHH
Confidence 433
No 260
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.21 E-value=2.6e+02 Score=26.97 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=52.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQ-------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~--~y~V~~a~s-------g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
.+.+|.++-..+...+.+...|++. +..+.-+.+ .++.++.+... .||+|++-+-+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHH
Confidence 4689999999999999999888875 445553333 33445555554 499999999998644 3455555
Q ss_pred ccCCCCEEEE
Q 007601 103 LEMDLPVIMM 112 (596)
Q Consensus 103 ~~~~ipVIll 112 (596)
..-..+|++-
T Consensus 123 ~~l~~~v~i~ 132 (172)
T PF03808_consen 123 QRLPAGVIIG 132 (172)
T ss_pred HHCCCCEEEE
Confidence 4445555543
No 261
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=33.04 E-value=1.3e+02 Score=32.46 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=45.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CC---eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 007601 35 RVLVVDDDITCLRILEQMLRRC--LY---NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~--~y---~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~ 100 (596)
.|+++|-|..+.+.=+.++... +| +| ....+|-..++.+.++ ++|+||+|+.=|.+.+..+-.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC--CceEEEEecCCccchHHHHHHH
Confidence 4778888887777777777653 34 23 2444888888877654 4999999998888887665443
No 262
>PRK04302 triosephosphate isomerase; Provisional
Probab=33.03 E-value=5.1e+02 Score=25.89 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=37.3
Q ss_pred HHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHH
Q 007601 96 KLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQH 148 (596)
Q Consensus 96 eLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP--l~~eeL~~~l~~ 148 (596)
++++.++. ..++|||.-.+-...+.+..+...|+++.+.=. ++.+.+...++.
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 34555665 347899988888888889999999999987764 344444444443
No 263
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=32.97 E-value=5.1e+02 Score=27.26 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=39.2
Q ss_pred HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|+-+++.+. ..+|||..-..+. ..+.+..|.++++..|-+.++|.+++..++..
T Consensus 271 ~~~~lEAma--~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 271 PMTLLEAMS--YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred ChHHHHHHH--cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhC
Confidence 566667663 4678875321333 33567788999999999999999999988754
No 264
>PLN02823 spermine synthase
Probab=32.59 E-value=98 Score=33.52 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=38.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-----~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP 90 (596)
..+|.+||=|+.+.+..++.+... +-.+. ...|+.+.+ +.....+|+||+|+--|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 358999999999999999888532 12232 455666555 33344699999997444
No 265
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=32.47 E-value=3.8e+02 Score=27.77 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=64.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+++|+.+.+.. +.++..+ .....+.-.-+.++..+++.. .|++++-.. +.-|+-+++.+. ..+|||...
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 677777776543 2233311 112333334456666666653 577766544 444666666663 467888753
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
. +. ..+.+..|..+++..|-+.++|.+++..++..
T Consensus 292 ~-~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 292 K-GG---ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred C-CC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 3 32 23445667789999999999999999887653
No 266
>smart00426 TEA TEA domain.
Probab=32.43 E-value=31 Score=28.93 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHHHHHhc
Q 007601 224 VWSVELHQQFVSAVNQLG 241 (596)
Q Consensus 224 ~wt~eLh~~F~~av~~Lg 241 (596)
+|..++-..|.+++..+-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 688899999988888764
No 267
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=32.27 E-value=2.1e+02 Score=33.24 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=51.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~s-g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVI 110 (596)
++.++++|.|+...+.++ +.++.+...+- -.+.++... -++.|++++-+.=+ .+-..++..+| .+++.+||
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~ag--i~~A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 423 KMRITVLERDISAVNLMR----KYGYKVYYGDATQLELLRAAG--AEKAEAIVITCNEP-EDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEeeCCCHHHHHhcC--CccCCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEE
Confidence 466777777776544332 34555443221 122333222 12356666544222 23345556665 35788888
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
..+.. .+...+..+.||+..+.-
T Consensus 496 aRa~~--~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 496 ARARG--RVEAHELLQAGVTQFSRE 518 (601)
T ss_pred EEeCC--HHHHHHHHhCCCCEEEcc
Confidence 87754 445666778999877654
No 268
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=32.26 E-value=5.4e+02 Score=25.94 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=60.3
Q ss_pred ccEEEEEeCCHH----HHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 007601 33 GLRVLVVDDDIT----CLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (596)
Q Consensus 33 girVLIVDDd~~----i~~~L~~lL~~~~-y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~------MPdmdGleLl~~I 101 (596)
|-.|+-+|-... -+..+-..++... .-..-+++.+|++...+. .+|+|=+-+. ..+..-|+|++++
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l 140 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVREL 140 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHH
Confidence 456677765421 1222233333322 223478899999988764 4898876442 1123458999999
Q ss_pred hccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 102 r~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
... .+|||.=-....++.+.++++.||+..+.=.
T Consensus 141 ~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 141 VQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp HHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred HhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 754 8899988888899999999999999887754
No 269
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.18 E-value=2.6e+02 Score=26.95 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=51.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~--~y~V~~a~-------sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
.+.+|.++-..+...+.+...|++. +..+..+. +..+.++.+.+. .||+|++-+-+|... .++.+.+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHH
Confidence 3789999999999999988888875 34444321 122345666655 499999999999754 3445554
Q ss_pred ccCCCCEEEEc
Q 007601 103 LEMDLPVIMMS 113 (596)
Q Consensus 103 ~~~~ipVIllT 113 (596)
.....+|++-.
T Consensus 121 ~~l~~~v~~~v 131 (171)
T cd06533 121 DRLPVPVAIGV 131 (171)
T ss_pred HHCCCCEEEEe
Confidence 43455666543
No 270
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=32.02 E-value=3.6e+02 Score=28.77 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-----EECCHHHHHHHHHhcCCCceEEEE
Q 007601 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-----TCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 27 ~~~fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~-----~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
...|..+=|||=+|-|+..++.=-.+-++.+..+. .-.-++...+++.+.+ ||++++
T Consensus 99 ~~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 160 (287)
T PF05582_consen 99 EEYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYR--PDILVI 160 (287)
T ss_pred ccccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcC--CCEEEE
Confidence 45566667999999999887766666666655443 2223444556666665 998876
No 271
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.87 E-value=4.8e+02 Score=27.55 Aligned_cols=91 Identities=8% Similarity=-0.005 Sum_probs=56.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 007601 35 RVLVVDDDITCLRILEQMLRR----CL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~----~~--y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i 107 (596)
.|||=|.+-...-.+...++. .+ ..+ .++.+.+++.+.... .+|.|.+|- =|.+.++++.+....
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 477777765555444444432 22 223 588999999888743 489999983 245666666432222
Q ss_pred CE-EEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 108 PV-IMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 108 pV-IllTa~~d~~~~~eAl~~GA~DYL 133 (596)
|+ |..++--..+.+.+..+.|++..-
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 32 334455677788888899988753
No 272
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=31.71 E-value=3.4e+02 Score=28.34 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=56.8
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC---CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH-HHHHHhccCC
Q 007601 35 RVLVVDDDITCLRILEQMLR----RCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGLEMD 106 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~----~~~---y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGle-Ll~~Ir~~~~ 106 (596)
.|||-|++....-.+...++ ..+ .....+.+.+|+.+.+.. .+|.|.+|-.-|+ .+. +++.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e--~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPE--ELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhccCCC
Confidence 46777776544433332222 222 234578899999988754 4899999975552 222 2333333235
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
+|| ..++--+.+.+.+..+.||+.+-.
T Consensus 228 i~i-~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 228 VLL-EASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eEE-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 554 455666778888888999987643
No 273
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.59 E-value=4.3e+02 Score=27.56 Aligned_cols=55 Identities=27% Similarity=0.300 Sum_probs=31.9
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH-H---HHHHHHHhcCCCceEEEEeCC
Q 007601 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA-A---VALDILRERKGCFDVVLSDVH 88 (596)
Q Consensus 32 ~girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~---sg-~---eALe~L~e~~~~pDLVLlDI~ 88 (596)
.+.+|++||-|.. ..+.++.+.+..+..+.... +. . ++++.+.. ..+|+||+|.-
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~ 163 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTA 163 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 4679999998852 23445555566565554332 22 2 23333333 35999999973
No 274
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=31.48 E-value=5.4e+02 Score=26.90 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=56.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC---CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hcc-C
Q 007601 35 RVLVVDDDITCLRILEQMLRR----CL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLE-M 105 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~----~~---y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I-r~~-~ 105 (596)
.|||.|++..+.-.+...++. .+ ....++.+.+|+++.++. .+|.|.+|-.-| +-++++ +.. .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 578888875544333333322 22 233588999999988753 489999987444 334443 211 2
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
.+||+. ++--+.+.+.+..+.|++..-.
T Consensus 222 ~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 367655 4555677888888999887643
No 275
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.12 E-value=1.5e+02 Score=31.28 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHh-ccCCCCEEEEc------CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 95 FKLLEHIG-LEMDLPVIMMS------ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 95 leLl~~Ir-~~~~ipVIllT------a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
+++++.+| ....+|+|+|| .++-.....++-+.|+++.|.-.+..++-......+.+
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~ 145 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEK 145 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHH
No 276
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.08 E-value=1.8e+02 Score=30.06 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHH
Q 007601 44 TCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (596)
Q Consensus 44 ~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~e 123 (596)
.....|.+..++.+..+....-..++++.+.+ +++-+.-|--.+.+-+.+++++.. .+.|||+=|+-...+.+.+
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~ 130 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIER 130 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHH
Confidence 34455667777778877755556677788865 344455555567788999999964 6789999999888777666
Q ss_pred HH----HcCCCeEEe------CCCCHHHHH
Q 007601 124 GI----RHGACDYLI------KPIREEELK 143 (596)
Q Consensus 124 Al----~~GA~DYL~------KPl~~eeL~ 143 (596)
|+ +.|..+..+ -|-.++++.
T Consensus 131 Av~~~~~~~~~~l~llHC~s~YP~~~e~~N 160 (241)
T PF03102_consen 131 AVEVLREAGNEDLVLLHCVSSYPTPPEDVN 160 (241)
T ss_dssp HHHHHHHHCT--EEEEEE-SSSS--GGG--
T ss_pred HHHHHHhcCCCCEEEEecCCCCCCChHHcC
Confidence 65 346665532 255555543
No 277
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=30.80 E-value=4.4e+02 Score=27.02 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=53.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC---------C--------------
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH---------M-------------- 89 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~---------M-------------- 89 (596)
+.+|..+|-++...+..+.-++..+.++.. .+..+.+.... ...+|+|++|-= +
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~--~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~ 186 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTAL--RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALD 186 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhc--CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhc
Confidence 368999999999999888888766655433 33333322111 125999999841 1
Q ss_pred CCCCHHHHHHHHh------ccCCCCEEEEcCCCCHHHHHHHH
Q 007601 90 PDMDGFKLLEHIG------LEMDLPVIMMSADGRVSAVMRGI 125 (596)
Q Consensus 90 PdmdGleLl~~Ir------~~~~ipVIllTa~~d~~~~~eAl 125 (596)
.+.||+++++.+- ..+.-.+++.++....+.+...+
T Consensus 187 gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l 228 (251)
T TIGR03704 187 GGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAF 228 (251)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHH
Confidence 1247787777762 12344566656555554444444
No 278
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.71 E-value=2.9e+02 Score=30.74 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=62.5
Q ss_pred CCCCccccccccCCCCCCCccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCC-
Q 007601 14 SGYGSSRAADVAVPDQFPAGLRVLVVDD-DITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHM- 89 (596)
Q Consensus 14 s~~g~~~~~~~~~~~~fp~girVLIVDD-d~~i~~~L~~lL~~~~y~V~~a~--sg~eALe~L~e~~~~pDLVLlDI~M- 89 (596)
|++++.++.-..+ ..+|-+|++.+| ---.+..+..++.+++.++..+. +..+..+.+.. +..++|+++.--
T Consensus 86 SGmaAI~~~~l~l---l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsN 160 (396)
T COG0626 86 SGMAAISTALLAL---LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSN 160 (396)
T ss_pred CcHHHHHHHHHHh---cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCC
Confidence 3455554432222 234778999988 46677788889999898888666 44455555543 248999998632
Q ss_pred CCCC--HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 90 PDMD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 90 Pdmd--GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
|-+. =+..+.++.+...+.+| +=..=-.-...+.+++|||=.
T Consensus 161 P~l~v~DI~~i~~~A~~~g~~vv-VDNTfatP~~q~PL~~GaDIV 204 (396)
T COG0626 161 PLLEVPDIPAIARLAKAYGALVV-VDNTFATPVLQRPLELGADIV 204 (396)
T ss_pred cccccccHHHHHHHHHhcCCEEE-EECCcccccccChhhcCCCEE
Confidence 3222 13334444323333333 322112223456666776533
No 279
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=30.37 E-value=1.3e+02 Score=30.06 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=43.5
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCC
Q 007601 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (596)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~ 138 (596)
|....+.+++++..+.-- .-.+=++.+.|-.-+.++.++.++ +.+++ +|=.-.--+.+.+.+|+++||...+..-++
T Consensus 13 Vir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivSP~~~ 90 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVSPGFD 90 (196)
T ss_dssp EETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEESS--
T ss_pred EEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEECCCCC
Confidence 334445555555443211 012334666666667899998886 34542 233344457788999999999744443355
Q ss_pred HHHHHH
Q 007601 139 EEELKN 144 (596)
Q Consensus 139 ~eeL~~ 144 (596)
++-++.
T Consensus 91 ~~v~~~ 96 (196)
T PF01081_consen 91 PEVIEY 96 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 280
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=30.17 E-value=5e+02 Score=27.12 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC---CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-c-C
Q 007601 35 RVLVVDDDITCLRILEQMLRR----CL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E-M 105 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~----~~---y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~-~ 105 (596)
-|||.|++-.+.-.+...++. .+ ....++.+.+++.+.+.. .+|.|.+|-.- .+.++++.. . .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~~-----~e~l~~~~~~~~~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNMS-----PEELREAVALLKG 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCcC-----HHHHHHHHHHcCC
Confidence 478888875544333322221 22 233588999999888753 48999999532 455555532 2 2
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
++|++..- --..+.+.+..+.|++..
T Consensus 226 ~ipi~AiG-GI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 226 RVLLEASG-GITLENIRAYAETGVDYI 251 (268)
T ss_pred CCcEEEEC-CCCHHHHHHHHHcCCCEE
Confidence 57766554 456777888889999865
No 281
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=30.12 E-value=4.3e+02 Score=29.04 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=44.6
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCCCEEEE-cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMM-SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 80 pDLVLlDI~MPdmdGle-Ll~~Ir~~~~ipVIll-Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.+.+|++..-+..=-+| ++..+. .....||.. ....+......+++.|+++.+++|-++.+++.....+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 56666655433222233 333332 244555553 344455667788899999999999999999987776543
No 282
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=30.07 E-value=6.9 Score=38.93 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=70.6
Q ss_pred EEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCCE
Q 007601 37 LVVDDDITCLRILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (596)
Q Consensus 37 LIVDDd~~i~~~L~~lL~~~~y----~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ipV 109 (596)
+.+||+...+..+..++....+ .........+....... ..+|+++.|+.||++.+++++.++.. ....++
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcccc--ccccccccccccccccccccccccccCCCCCCCCc
Confidence 7777777777666666655321 11112222110000000 24899999999999999999988853 334556
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
+++............+..++.+|+.||....++...+.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 137 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVR 137 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCcccCCcccc
Confidence 66666655555677777789999999988666665555543
No 283
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=29.88 E-value=5.8e+02 Score=27.66 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=51.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHhc------------CCCceEEEEeCCCCCCCH--HHHH
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRER------------KGCFDVVLSDVHMPDMDG--FKLL 98 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y-~V-~~a~sg~eALe~L~e~------------~~~pDLVLlDI~MPdmdG--leLl 98 (596)
+|+-||-++...+..++-++..+. ++ ....+..+.+..+... ...||+||+|- | -.| -+++
T Consensus 230 ~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--P-R~G~~~~~l 306 (362)
T PRK05031 230 RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--P-RAGLDDETL 306 (362)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--C-CCCCcHHHH
Confidence 799999999999888887766554 33 3667777776644321 11389999995 3 344 4577
Q ss_pred HHHhccCCCCEEEEcCCC
Q 007601 99 EHIGLEMDLPVIMMSADG 116 (596)
Q Consensus 99 ~~Ir~~~~ipVIllTa~~ 116 (596)
+.|.. + -.||.++..+
T Consensus 307 ~~l~~-~-~~ivyvSC~p 322 (362)
T PRK05031 307 KLVQA-Y-ERILYISCNP 322 (362)
T ss_pred HHHHc-c-CCEEEEEeCH
Confidence 77754 2 3577777655
No 284
>PLN02476 O-methyltransferase
Probab=29.83 E-value=2.2e+02 Score=30.05 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=43.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y~--V~-~a~sg~eALe~L~e~--~~~pDLVLlDI~ 88 (596)
.|..-+|.-+|-++...+..+..+++.++. |. ...++.+.|..+... .+.||+||+|..
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 344457999999999999999999988763 43 456777777655321 236999999974
No 285
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=29.75 E-value=71 Score=31.23 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=44.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE-eCCC-CCCCH--HHHHHHHhccCCCCEEE
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS-DVHM-PDMDG--FKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLl-DI~M-PdmdG--leLl~~Ir~~~~ipVIl 111 (596)
|||||....+-..+.++|++.++++....+....++.+... .||.||+ -=-+ |..++ .+++++. ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 89999999999999999999888877655332222333332 3785555 2221 22223 3344443 34678775
Q ss_pred Ec
Q 007601 112 MS 113 (596)
Q Consensus 112 lT 113 (596)
+-
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 53
No 286
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.70 E-value=5.4e+02 Score=27.30 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=58.9
Q ss_pred CCccEEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHH-----H--HHhcCCCceEEEEeCCCCCCCH--HH
Q 007601 31 PAGLRVLVV--DDDITC---LRILEQMLRRCLYNVTTCSQAAVALD-----I--LRERKGCFDVVLSDVHMPDMDG--FK 96 (596)
Q Consensus 31 p~girVLIV--DDd~~i---~~~L~~lL~~~~y~V~~a~sg~eALe-----~--L~e~~~~pDLVLlDI~MPdmdG--le 96 (596)
|...+|.|+ .+.+.. .+.+.+.|++.++++.......+.+. . .......+|+||+ -+.|| ++
T Consensus 2 ~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt~l~ 77 (295)
T PRK01231 2 PSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGSLLG 77 (295)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHHHHH
Confidence 444468887 333433 44555556666777765443222111 0 0111123677766 26677 33
Q ss_pred HHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 97 LLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 97 Ll~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
.++.+. ..++||+-+.. |=.+|+. .++.+++..++..++++.
T Consensus 78 ~~~~~~-~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 78 AARALA-RHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HHHHhc-CCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCC
Confidence 333332 35788875543 5566774 688999999999998754
No 287
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=29.64 E-value=1.3e+02 Score=26.94 Aligned_cols=22 Identities=18% Similarity=0.005 Sum_probs=11.9
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE
Q 007601 40 DDDITCLRILEQMLRRCLYNVT 61 (596)
Q Consensus 40 DDd~~i~~~L~~lL~~~~y~V~ 61 (596)
|.+......+...|...+|++.
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~ 29 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLF 29 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEE
Confidence 4444444455555556677764
No 288
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=29.58 E-value=64 Score=31.47 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=26.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS 64 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~ 64 (596)
+||||||.....-..+.+.|++.++++....
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6899999999888889999999887776555
No 289
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.45 E-value=1.3e+02 Score=37.15 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=50.5
Q ss_pred CceEEEEe-CCCCCCCHHHHH-HHHhccC-CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 79 CFDVVLSD-VHMPDMDGFKLL-EHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 79 ~pDLVLlD-I~MPdmdGleLl-~~Ir~~~-~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
.+-|+|+| ++|-..+.++.+ +.|.+-+ .+.+|+.|... ..+...+...+.-|-.||++.+++...+++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~--~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP--QKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc--hhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 47889998 666555555544 4444322 45566665443 3466677777889999999999999999988765
No 290
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.39 E-value=3.6e+02 Score=27.16 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=46.3
Q ss_pred eEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 59 NVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 59 ~V~~a~sg~eALe~L~e~-~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
-|....+.+++++..+.- ...+.++ .+.|-.-+.++.++++++ .+++.|- .-.--+.+.+.+++++||. |+.-|
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~i--Eit~~t~~a~~~i~~l~~~~~~~~vG-AGTVl~~~~a~~a~~aGA~-FivsP 87 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVL--EVTLRTPVALDAIRLLRKEVPDALIG-AGTVLNPEQLRQAVDAGAQ-FIVSP 87 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEE--EEeCCCccHHHHHHHHHHHCCCCEEE-EEeCCCHHHHHHHHHcCCC-EEECC
Confidence 345666777776655532 1235544 344444568888888864 3443222 3333567778899999986 55556
Q ss_pred CCHHHH
Q 007601 137 IREEEL 142 (596)
Q Consensus 137 l~~eeL 142 (596)
....++
T Consensus 88 ~~~~~v 93 (204)
T TIGR01182 88 GLTPEL 93 (204)
T ss_pred CCCHHH
Confidence 433333
No 291
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=29.25 E-value=1.8e+02 Score=27.53 Aligned_cols=54 Identities=28% Similarity=0.276 Sum_probs=43.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC----CHHHHHHHHHhcCCCceEEEEeCCCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSDVHMPD 91 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~----sg~eALe~L~e~~~~pDLVLlDI~MPd 91 (596)
..|.+|+|+.......+-+..+|.+.+..|+.+. +.+++ ++ .-|+|++-+--+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh----hCCEEEEecCCCC
Confidence 3578999999999999999999999999999888 44433 32 2699999886653
No 292
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=29.23 E-value=1.2e+02 Score=28.71 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=34.5
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHHhC-CCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007601 31 PAGLRVLVVDDDITC---------LRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 31 p~girVLIVDDd~~i---------~~~L~~lL~~~-~y~V~~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
...++|.|||.|... -+.+.+.|+.. .+.+. ..+.++|.+.++..+ ++.+|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~-~~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWH-FVSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceE-EcCHHHHHHHhHcCc--EEEEEE
Confidence 457899999988754 34455555543 44544 348899999998754 666653
No 293
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.07 E-value=4.2e+02 Score=25.99 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=50.9
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCC---EEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP---VIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ip---VIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
.-|....+.+++++.++.-- .-.+=++.+++.+.+..++++.+++. +.+. ..+++ .+....|++.||+..+
T Consensus 15 ~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~----~d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 15 IAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILT----LEDLEEAIAAGAQFCF 89 (187)
T ss_pred EEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEc----HHHHHHHHHcCCCEEE
Confidence 45667888888888776421 12344566677777888888887532 2221 12222 2567889999998766
Q ss_pred eCCCCHHHHH
Q 007601 134 IKPIREEELK 143 (596)
Q Consensus 134 ~KPl~~eeL~ 143 (596)
.--++.+.+.
T Consensus 90 ~p~~~~~~~~ 99 (187)
T PRK07455 90 TPHVDPELIE 99 (187)
T ss_pred CCCCCHHHHH
Confidence 6556655544
No 294
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=29.07 E-value=3.7e+02 Score=27.72 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=36.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~-----y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP 90 (596)
.-+|.+||-++.+.+..++.+.... -.+. ...++.+.++ .....+|+||+|..-|
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFDVIIVDSTDP 156 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCccEEEEeCCCC
Confidence 3579999999999988888875421 1222 3355555443 3234699999998644
No 295
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.04 E-value=4.3e+02 Score=26.93 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=35.1
Q ss_pred HHHHHHhccCCCCEEEEc-----CCCCHHHHHHHHHcCCCeEEeC--CCC-HHHHHHHHHHH
Q 007601 96 KLLEHIGLEMDLPVIMMS-----ADGRVSAVMRGIRHGACDYLIK--PIR-EEELKNIWQHV 149 (596)
Q Consensus 96 eLl~~Ir~~~~ipVIllT-----a~~d~~~~~eAl~~GA~DYL~K--Pl~-~eeL~~~l~~v 149 (596)
++++.+|...++|+++|+ ..+-...+.++.+.|++..+.- |++ .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 467777766788987764 2233444667779999999886 343 45665555444
No 296
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=29.00 E-value=64 Score=31.59 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=44.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC-C-CCCCHH--HHHHHHhccCCCCEEE
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-M-PDMDGF--KLLEHIGLEMDLPVIM 111 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~-M-PdmdGl--eLl~~Ir~~~~ipVIl 111 (596)
|||||....+-..+..+|++.+.++..+.+.+..++.+... .||.||+-=- + |..++. ++++.+ ...+||+=
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 89999999999999999998888877665543223333332 3777766321 1 222332 333332 34678765
Q ss_pred E
Q 007601 112 M 112 (596)
Q Consensus 112 l 112 (596)
+
T Consensus 78 I 78 (187)
T PRK08007 78 V 78 (187)
T ss_pred E
Confidence 4
No 297
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.62 E-value=2.5e+02 Score=32.88 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=52.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~s-g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVI 110 (596)
++++.++|.|+...+.+++ .++.+...+- -.+.++.. .-++.|++++-+.=++ .-..++..+| .+++++||
T Consensus 423 g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~a--gi~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESA--GAAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQII 495 (621)
T ss_pred CCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhc--CCCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEE
Confidence 5678888888875554433 4666543221 12223322 2234777777653222 2355555665 36788888
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEE
Q 007601 111 MMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL 133 (596)
..+.+ .+...+..+.||+...
T Consensus 496 aRa~d--~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 496 ARARD--VDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEECC--HHHHHHHHHCCCCEEe
Confidence 87753 4456666688888654
No 298
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=28.54 E-value=1.8e+02 Score=28.19 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCC--CCCHHHHHHHHhcc-CCCCEEEE--cCCCCHHHHHHHHHcCCCeEEeCCCC-
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLE-MDLPVIMM--SADGRVSAVMRGIRHGACDYLIKPIR- 138 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MP--dmdGleLl~~Ir~~-~~ipVIll--Ta~~d~~~~~eAl~~GA~DYL~KPl~- 138 (596)
+.+++++.++.-.+.++ .+.+.+| -..|++.++.+++. +++|+++- ...........+.++||+..+.-...
T Consensus 11 ~~~~~~~~~~~l~~~i~--~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~ 88 (202)
T cd04726 11 DLEEALELAKKVPDGVD--IIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP 88 (202)
T ss_pred CHHHHHHHHHHhhhcCC--EEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC
Confidence 44455555544321223 3444333 24578899998754 67887763 23333334567789999877765433
Q ss_pred HHHHHHHHHH
Q 007601 139 EEELKNIWQH 148 (596)
Q Consensus 139 ~eeL~~~l~~ 148 (596)
.+.+...++.
T Consensus 89 ~~~~~~~i~~ 98 (202)
T cd04726 89 LSTIKKAVKA 98 (202)
T ss_pred HHHHHHHHHH
Confidence 2334444443
No 299
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=28.38 E-value=8e+02 Score=26.69 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=60.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC---CCC--HHHHHHHHhcc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTT--CSQAAVALDILRERKGCFDVVLSDVHMP---DMD--GFKLLEHIGLE 104 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y--~V~~--a~sg~eALe~L~e~~~~pDLVLlDI~MP---dmd--GleLl~~Ir~~ 104 (596)
++..||-|-+. .+.++..+++.+. .|.. .-+.++..+.+.. .|+.++=.... +.+ |..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 45555555442 2344444444332 1222 2233444444432 46666532211 123 345667663
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 105 ~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
..+|||. |..+. ..+.+..|.++++..|-+.++|..++..++.
T Consensus 327 ~G~PVI~-t~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVS-TLHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEE-eCCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5678876 33333 3456788999999999999999999988775
No 300
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=28.30 E-value=3.8e+02 Score=26.07 Aligned_cols=70 Identities=7% Similarity=-0.045 Sum_probs=51.3
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
..+.+.+|+.+.++. .+|.|-++- ++.. |.++++.++. .+.+|++.+-+- +.+.+.+.++.|++..-.-.
T Consensus 102 ~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 102 PGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred CCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEch
Confidence 356688998888753 489998853 3333 8999999864 456888877665 77888899999987765543
No 301
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=28.29 E-value=4.6e+02 Score=30.72 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=67.1
Q ss_pred HHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-C----CCHHHHHHHHh---ccCCCCEEEEcCCCCH
Q 007601 49 LEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (596)
Q Consensus 49 L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MP-d----mdGleLl~~Ir---~~~~ipVIllTa~~d~ 118 (596)
.-..|++.|+.+. -+.++...+..+..-+ ||.|=+|-.+- + .....+++.|. ...++.|| .++-.+.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~~ 759 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVETK 759 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCCH
Confidence 4445677788875 4667778888887664 99999997542 1 22344566552 33455555 5677777
Q ss_pred HHHHHHHHcCCCe----EEeCCCCHHHHHHHHHH
Q 007601 119 SAVMRGIRHGACD----YLIKPIREEELKNIWQH 148 (596)
Q Consensus 119 ~~~~eAl~~GA~D----YL~KPl~~eeL~~~l~~ 148 (596)
+....+.+.|++. |+.||...++|..-++.
T Consensus 760 ~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 760 EQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 7777788999973 68899999999875443
No 302
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=28.27 E-value=2.3e+02 Score=27.41 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEECCHHHHHHHHHhc--CCCceEEEEeCC-CCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRER--KGCFDVVLSDVH-MPDM 92 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~---------------V~~a~sg~eALe~L~e~--~~~pDLVLlDI~-MPdm 92 (596)
..++||||+.--..+.+.+.+.|+...+. +.....+. ....+... ...+|+||+|=- .-|-
T Consensus 31 ~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~~Dp 109 (148)
T PF07652_consen 31 KRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHFTDP 109 (148)
T ss_dssp HTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT--SH
T ss_pred HccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEeccccCCH
Confidence 35789999999999999999999875322 22222332 33333321 125999999953 3332
Q ss_pred CHHHH---HHHHhccCCCCEEEEcCCC
Q 007601 93 DGFKL---LEHIGLEMDLPVIMMSADG 116 (596)
Q Consensus 93 dGleL---l~~Ir~~~~ipVIllTa~~ 116 (596)
.-+.+ ++.+.......+|++|+.+
T Consensus 110 ~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 110 TSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 23333 3333334456899999865
No 303
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=28.20 E-value=4.2e+02 Score=30.54 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=57.8
Q ss_pred cEEEEE--eCCHHHHHHHHHHHH----hCCCeEEEECCHHHHHH----------------HHHhcCCCceEEEEeCCCCC
Q 007601 34 LRVLVV--DDDITCLRILEQMLR----RCLYNVTTCSQAAVALD----------------ILRERKGCFDVVLSDVHMPD 91 (596)
Q Consensus 34 irVLIV--DDd~~i~~~L~~lL~----~~~y~V~~a~sg~eALe----------------~L~e~~~~pDLVLlDI~MPd 91 (596)
-+|+|| .+.+...+.+..+.+ ..++.|.........+. .+.+....+|+||+ -+
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iG 270 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LG 270 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----EC
Confidence 467777 555666655555444 34566665433222110 00001113566665 36
Q ss_pred CCHHHHHHHHhc--cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 92 MDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 92 mdGleLl~~Ir~--~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
.||- +|+..+. ...+||+=+ ..|-.+||. +++.+++...+..++++.+
T Consensus 271 GDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 271 GDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGPI 320 (508)
T ss_pred CcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCCc
Confidence 7873 3444432 345787643 467788985 6899999999999987543
No 304
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.79 E-value=4.7e+02 Score=30.54 Aligned_cols=55 Identities=24% Similarity=0.218 Sum_probs=36.2
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC
Q 007601 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (596)
Q Consensus 33 girVLIVDDd~~i---~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~ 88 (596)
+.+|.+++-|.-- .+.++.+-+..++.+..+.+..+..+.++... ++|+||+|.-
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDTa 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDTA 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecCC
Confidence 4679998876522 23333333444666777777777777776654 5999999974
No 305
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.60 E-value=3.8e+02 Score=28.12 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=56.5
Q ss_pred cEEEEE--eCCH---HHHHHHHHHHHhCCCeEEEECCHHHHHHHH------HhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 34 LRVLVV--DDDI---TCLRILEQMLRRCLYNVTTCSQAAVALDIL------RERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 34 irVLIV--DDd~---~i~~~L~~lL~~~~y~V~~a~sg~eALe~L------~e~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
|||.|| .+.+ .....+..+|++.++++.......+..... .....++|+||+ -+.||. +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 577777 2223 344555566666778877653322211100 000113676665 266773 233333
Q ss_pred -ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 103 -LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 103 -~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
....+||+.+.. |-.+|+. .++++++...+.+++++.+
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCc
Confidence 234788887653 3345665 6778999999998887643
No 306
>PRK00811 spermidine synthase; Provisional
Probab=27.49 E-value=4.4e+02 Score=27.53 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=39.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC------CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRC------LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~------~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP 90 (596)
+..-+|.+||=|+.+.+..++.+... .-++. ...++.+.+. ...+.+|+||+|..-|
T Consensus 98 ~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~---~~~~~yDvIi~D~~dp 161 (283)
T PRK00811 98 PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA---ETENSFDVIIVDSTDP 161 (283)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh---hCCCcccEEEECCCCC
Confidence 33458999999999999999988642 12232 4556655443 3334699999998555
No 307
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=27.44 E-value=2.5e+02 Score=29.61 Aligned_cols=84 Identities=18% Similarity=0.331 Sum_probs=57.7
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeC---C-C----CCCCHHHHHHHHhccCCCCEEEEcCC-CCHHHHHHHHHcCCCeEE
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDV---H-M----PDMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI---~-M----PdmdGleLl~~Ir~~~~ipVIllTa~-~d~~~~~eAl~~GA~DYL 133 (596)
+++.++|.+..++.. +|.+-..+ + + |.. +++++++|++.-++|+++.-+. -+.+...+++++|++..=
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 568999999887443 78777542 2 1 333 4999999987678999888633 345567889999998876
Q ss_pred eCCCCHHHHHHHHHHHHHhh
Q 007601 134 IKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 134 ~KPl~~eeL~~~l~~vlrk~ 153 (596)
.- .+|..++.+.++..
T Consensus 229 v~----T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRKV 244 (282)
T ss_pred EC----cHHHHHHHHHHHHH
Confidence 54 35556666555543
No 308
>PRK08185 hypothetical protein; Provisional
Probab=27.42 E-value=2.5e+02 Score=29.82 Aligned_cols=84 Identities=18% Similarity=0.373 Sum_probs=57.9
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeC---C-------CCCCCHHHHHHHHhccCCCCEEEEcCCC-CHHHHHHHHHcCCCe
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDV---H-------MPDMDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACD 131 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI---~-------MPdmdGleLl~~Ir~~~~ipVIllTa~~-d~~~~~eAl~~GA~D 131 (596)
.++.++|.+..+... +|.+-+-+ + -|+.+ ++++++|++.-++|+++.-+.+ ..+...++++.|+.-
T Consensus 148 ~t~peea~~f~~~Tg--vD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRTG--VDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhhC--CCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 558889988887643 78777733 1 24556 9999999876789999986653 455677899999754
Q ss_pred EEeCCCCHHHHHHHHHHHHHhh
Q 007601 132 YLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 132 YL~KPl~~eeL~~~l~~vlrk~ 153 (596)
.=. -.+|+.++...++..
T Consensus 225 iNi----~T~l~~a~~~~~~~~ 242 (283)
T PRK08185 225 INI----SSDMKYAFFKKVREI 242 (283)
T ss_pred EEe----ChHHHHHHHHHHHHH
Confidence 432 245666666665543
No 309
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=27.26 E-value=6.9e+02 Score=25.89 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=58.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE-C-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC--C
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTC-S-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--D 106 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~--y~V~~a-~-sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~--~ 106 (596)
.+||.||----.........+...+ +.+..+ + +.+.+.+...+.. +.-...| .+.+-..+ +
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTD-----------LEELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCC
Confidence 4677777765444443444444432 344433 3 3434444444332 2212222 12221223 3
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHHHHH
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQHVVR 151 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KP--l~~eeL~~~l~~vlr 151 (596)
+-+|........+.+.+|+++|..=|+.|| .+.+|...+++.+-+
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 333434445567888999999999999999 578888877765543
No 310
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=27.23 E-value=2.4e+02 Score=30.85 Aligned_cols=56 Identities=11% Similarity=-0.054 Sum_probs=39.6
Q ss_pred CceEEEEeCCCCC-CCHHHHHHHHhcc-CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 79 ~pDLVLlDI~MPd-mdGleLl~~Ir~~-~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.+|+|++|+---. ..-++.+++||.. ++.+|| --.-...+.+.+++++||+..+.=
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~vi-aGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIM-AGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEE-EecccCHHHHHHHHHcCCCEEEEc
Confidence 5899999986543 3347788888754 444333 333566788889999999987644
No 311
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=27.10 E-value=6.3e+02 Score=27.38 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=41.8
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 007601 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (596)
Q Consensus 34 irVLIVDDd~~i~-----~~L~~lL~~~~y~V~~a~---------sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~ 99 (596)
-|+|||-|..... +.+...|+..++++..+. +..++.+.+++.. +|+||- .-+..-+++.|
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 5899998876544 567788877676665543 2556777777654 898875 44555566665
Q ss_pred HH
Q 007601 100 HI 101 (596)
Q Consensus 100 ~I 101 (596)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 54
No 312
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=26.89 E-value=7.8e+02 Score=26.05 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=62.0
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--eEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 007601 34 LRVLVVDD---DI-TCLRILEQMLRRCLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (596)
Q Consensus 34 irVLIVDD---d~-~i~~~L~~lL~~~~y--~V~~a--~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~ 105 (596)
++++|+.+ +- ...+.++.+.+..+. .|... -+.++..+++.. .|+.++-.. .+.-|+.+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 55666643 11 233444555544332 23322 233444455442 466665432 3344667777764 5
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.+|||.... +. ..+.+..|..+++..|-+.+++.+++.+++.
T Consensus 326 G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 678886433 33 2345677888999999999999999988875
No 313
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=26.69 E-value=5e+02 Score=33.07 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=66.5
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCC-CCCH-HHHHHHHhc
Q 007601 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL 103 (596)
Q Consensus 33 girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a~---sg~eALe~L~e~~~~pDLVLlDI~MP-dmdG-leLl~~Ir~ 103 (596)
.-+|++. |-|..=..++..+|+..||+|.-.. ..++.++.+++.. +|+|-+-..|. .+.. -++++.+++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3477777 7777777778888888999997543 4677777777764 99999988775 4443 446677754
Q ss_pred -cCCCCEEEEcCCCCHHHHHHHH--Hc-CCCeEEeC
Q 007601 104 -EMDLPVIMMSADGRVSAVMRGI--RH-GACDYLIK 135 (596)
Q Consensus 104 -~~~ipVIllTa~~d~~~~~eAl--~~-GA~DYL~K 135 (596)
...++|++=-+--..+....-+ .+ ||+.|-.-
T Consensus 810 ~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~d 845 (1178)
T TIGR02082 810 RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLD 845 (1178)
T ss_pred cCCCceEEEeccccchhHHHhhhhhhccCCeEEecC
Confidence 3467777654444444433212 23 88777653
No 314
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=26.65 E-value=3.4e+02 Score=27.87 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=60.6
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEE--E---EC--CHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhccC-CC
Q 007601 38 VVDDDITCLRILEQMLRRCLYNVT--T---CS--QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEM-DL 107 (596)
Q Consensus 38 IVDDd~~i~~~L~~lL~~~~y~V~--~---a~--sg~eALe~L~e~~~~pDLVLlDI~MPdm--dGleLl~~Ir~~~-~i 107 (596)
+..|...+.+.++.+- ..+..|. . .. +..+..+.+.+. ..|.|.+|...++. --++.++++++.. .+
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 4556566666666555 3333222 1 11 122333344443 48988889766654 3488888887664 59
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
|||---+-.+.+.+.+.+++||+....
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999888888889999999999987643
No 315
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=26.48 E-value=6.3e+02 Score=25.40 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHH
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~ 144 (596)
+..+..+.+.. .|++++-....+.-|+.+++.+. ..+|||.--. +. ..+.+..|..+|+..+ .++|..
T Consensus 233 ~~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma--~G~PvI~~~~-~~---~~e~i~~~~~g~l~~~--~~~l~~ 300 (335)
T cd03802 233 GGAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA--CGTPVIAFRR-GA---VPEVVEDGVTGFLVDS--VEELAA 300 (335)
T ss_pred CHHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh--cCCCEEEeCC-CC---chhheeCCCcEEEeCC--HHHHHH
Confidence 34455555543 57777654444555777888774 4578885322 22 2355677888999987 888888
Q ss_pred HHHHHH
Q 007601 145 IWQHVV 150 (596)
Q Consensus 145 ~l~~vl 150 (596)
++..+.
T Consensus 301 ~l~~l~ 306 (335)
T cd03802 301 AVARAD 306 (335)
T ss_pred HHHHHh
Confidence 887764
No 316
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.32 E-value=4.1e+02 Score=27.12 Aligned_cols=101 Identities=10% Similarity=0.025 Sum_probs=61.0
Q ss_pred ccE-EEEEeCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHH
Q 007601 33 GLR-VLVVDDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEH 100 (596)
Q Consensus 33 gir-VLIVDDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPd--------mdGleLl~~ 100 (596)
|.. |++.|-..+..+.+...+++.+..... -.+..+.++.+.... .|.|++=-.+|. .+..+.+++
T Consensus 104 G~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~ 181 (242)
T cd04724 104 GVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKR 181 (242)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHH
Confidence 344 444455665555666666666654332 223344455554422 343332112331 234577788
Q ss_pred HhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 101 Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
+|+..++||++=.+-...+.+.++.++ |+.++.-.
T Consensus 182 lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 182 IRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred HHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 877678999998888888888888899 99999864
No 317
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=26.21 E-value=6.1e+02 Score=26.37 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=38.5
Q ss_pred CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 93 dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
-|+.+++.+. ..+|||....... ..+.+..|.++|+..|-+.++|..++..++..
T Consensus 291 ~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 291 FGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred cChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 3555666653 5678887432212 23445778899999999999999999988753
No 318
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=26.16 E-value=6.5e+02 Score=27.72 Aligned_cols=81 Identities=15% Similarity=-0.018 Sum_probs=48.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y-~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
-+|+-||-++...+..+.-++..+. ++ ....+..+.+..+......+|+|++|--=.++ ..++++.+.....-.+|.
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-~~~~l~~l~~l~~~~ivy 393 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-AAEVLRTIIELKPERIVY 393 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-CHHHHHHHHhcCCCEEEE
Confidence 4799999999998888887766543 23 24566666554332212248999998521121 256667664322234666
Q ss_pred EcCC
Q 007601 112 MSAD 115 (596)
Q Consensus 112 lTa~ 115 (596)
++..
T Consensus 394 vsc~ 397 (431)
T TIGR00479 394 VSCN 397 (431)
T ss_pred EcCC
Confidence 6644
No 319
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=26.14 E-value=4.2e+02 Score=28.94 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHH
Q 007601 43 ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVM 122 (596)
Q Consensus 43 ~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~ 122 (596)
......|.+..++.|..+.+..-..++.+.+..- ++-..-|--++.+-+.+++.|.... -|||+-|+-...+.+.
T Consensus 89 ~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~----~~~ayKIaS~E~~~~plik~iA~~~-kPiIlSTGma~~~ei~ 163 (347)
T COG2089 89 LEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESL----NPPAYKIASGEINDLPLIKYIAKKG-KPIILSTGMATIEEIE 163 (347)
T ss_pred HHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhc----CCCeEEecCccccChHHHHHHHhcC-CCEEEEcccccHHHHH
Confidence 3445556666666677776655566777777653 2223344455677789999996433 3999999988877777
Q ss_pred HHH----HcCCCeEEe
Q 007601 123 RGI----RHGACDYLI 134 (596)
Q Consensus 123 eAl----~~GA~DYL~ 134 (596)
+|+ +.|..|+++
T Consensus 164 ~av~~~r~~g~~~i~L 179 (347)
T COG2089 164 EAVAILRENGNPDIAL 179 (347)
T ss_pred HHHHHHHhcCCCCeEE
Confidence 665 578877644
No 320
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=26.11 E-value=3.6e+02 Score=30.36 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=30.9
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEeCC
Q 007601 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVH 88 (596)
Q Consensus 33 girVLIVDDd~~i---~~~L~~lL~~~~y~V~~a~---sg----~eALe~L~e~~~~pDLVLlDI~ 88 (596)
+.+|++|+-|+-- .+.++.+-+..+..+.... +. .++++.++.. .+|+||+|.-
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDTa 191 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDTS 191 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 5799999988633 2333333333344444333 22 2455555443 4999999984
No 321
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=26.03 E-value=97 Score=32.41 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=39.6
Q ss_pred CHHHHHHHHh-ccCCCCEEEEcCCC------CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 007601 93 DGFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (596)
Q Consensus 93 dGleLl~~Ir-~~~~ipVIllTa~~------d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~ 147 (596)
+.+++++++| ...++|+|+||=.. -.....++-+.|+++.|.-.+..++-.....
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 3577888888 77899999998543 2345666778999999998777766544433
No 322
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=25.94 E-value=3.4e+02 Score=28.68 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=51.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeC--CC---CC--CCHHHHHHHHhccCCCCEEEEcCCC-CHHHHHHHHHcCCCeEE
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDV--HM---PD--MDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI--~M---Pd--mdGleLl~~Ir~~~~ipVIllTa~~-d~~~~~eAl~~GA~DYL 133 (596)
++++.++|.+..++. .+|.+-+-+ .- ++ .=|++.+++|++.-++|++++-+.+ ..+...++++.|++..=
T Consensus 151 s~t~~eea~~f~~~t--g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEET--DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhh--CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 478999998888653 378777633 11 11 2379999999877789999987443 55667889999998765
Q ss_pred e
Q 007601 134 I 134 (596)
Q Consensus 134 ~ 134 (596)
.
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 323
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=25.87 E-value=3.6e+02 Score=27.11 Aligned_cols=55 Identities=16% Similarity=0.323 Sum_probs=41.0
Q ss_pred Cce-EEEEeCC----CCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHc-CCCeEEe
Q 007601 79 CFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI 134 (596)
Q Consensus 79 ~pD-LVLlDI~----MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~-GA~DYL~ 134 (596)
.+| +++.++. +++ -.++++++++...++|||.--+..+.+.+.++++. |++..+.
T Consensus 162 G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 162 GAGEILLTSMDRDGTKKG-YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 477 6665654 222 24788888876678999998888899999999986 8887655
No 324
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=25.67 E-value=3.2e+02 Score=28.90 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=50.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHhccCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDG--FKLLEHIGLEMDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~-V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdG--leLl~~Ir~~~~ip 108 (596)
+.+|+-||-++...+..++-++..+.. +. ...+..+... .....||+|++| |...| -++++.|.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~---~~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT---AQGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH---hcCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 358999999999999888888766542 32 4555555432 112259999999 43444 35666664333335
Q ss_pred EEEEcCCCCH
Q 007601 109 VIMMSADGRV 118 (596)
Q Consensus 109 VIllTa~~d~ 118 (596)
||.+|..+..
T Consensus 269 ivyvsc~p~t 278 (315)
T PRK03522 269 ILYSSCNAQT 278 (315)
T ss_pred EEEEECCccc
Confidence 6666665543
No 325
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=25.66 E-value=3.3e+02 Score=27.46 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=52.0
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
..+..+.++.+.+.. .-.+|++|+.=.+ +.| ++++++++...++|+|.--+-.+.+...++.+.|+++.+.
T Consensus 146 ~~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 146 GIDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CcCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 345677777776653 3579999997654 333 6778888655699999988888999999999999988775
No 326
>COG4022 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.63 E-value=3.5e+02 Score=28.24 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=51.4
Q ss_pred HHHHHcCCCCCCccccccccCCCCCCCccEEEEEe---CCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCc
Q 007601 6 RIVQSSGGSGYGSSRAADVAVPDQFPAGLRVLVVD---DDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCF 80 (596)
Q Consensus 6 ~l~~~~~Gs~~g~~~~~~~~~~~~fp~girVLIVD---Dd~~i~~~L~~lL~~~~y~--V~~a~sg~eALe~L~e~~~~p 80 (596)
.|||=+||-.+|-.-+.+.+..-..-....-.|.| ..-...+.++..++- +|. ..++.++++|-++-....+..
T Consensus 114 ~lvQGigGriSGlveT~Pi~eVI~rie~~gg~VL~~~ta~Idq~~GVkkA~El-gykkvAVTvada~~Ak~lR~le~~~l 192 (286)
T COG4022 114 ALVQGIGGRISGLVETEPIDEVIDRIEKSGGIVLDPKTATIDQVEGVKKAAEL-GYKKVAVTVADAETAKRLRKLEADEL 192 (286)
T ss_pred HHHhhcccceeccccCCchHHHHHhhhhcCceeeCccccccchhhhHHHHHHc-CcceEEEEecCHHHHHHHHHhhcCcc
Confidence 46777777555544433322111111111223444 223345677777764 554 347778888766544444458
Q ss_pred eEEEEeCCCCCCCHHHH
Q 007601 81 DVVLSDVHMPDMDGFKL 97 (596)
Q Consensus 81 DLVLlDI~MPdmdGleL 97 (596)
||++.-+|..+.|+-+.
T Consensus 193 ~llv~aVH~TGi~~eea 209 (286)
T COG4022 193 DLLVIAVHVTGIDEEEA 209 (286)
T ss_pred eEEEEEEEecccChHHH
Confidence 99999999998887654
No 327
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=25.60 E-value=2.9e+02 Score=28.72 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCCceEEEEeC--CC--C--C-CCHHHHHHHHhccCCCCEEEEcCC-CC-----HHHHHHHHHcCCCe-
Q 007601 66 AAVALDILRERKGCFDVVLSDV--HM--P--D-MDGFKLLEHIGLEMDLPVIMMSAD-GR-----VSAVMRGIRHGACD- 131 (596)
Q Consensus 66 g~eALe~L~e~~~~pDLVLlDI--~M--P--d-mdGleLl~~Ir~~~~ipVIllTa~-~d-----~~~~~eAl~~GA~D- 131 (596)
...|++.+++.. ..+|+|+.- .. | . .--+..+..+++..+.||++=+.+ .+ ......|+.+||++
T Consensus 148 ~~~Ave~i~~~G-n~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 148 WLYAAEYILSSG-NGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGL 226 (260)
T ss_pred HHHHHHHHHHcC-CCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 456667776543 468999874 12 2 1 123455556665567999984444 33 45566788999998
Q ss_pred EEeCCCCHH
Q 007601 132 YLIKPIREE 140 (596)
Q Consensus 132 YL~KPl~~e 140 (596)
++.|-++++
T Consensus 227 ~iE~H~t~d 235 (260)
T TIGR01361 227 MIEVHPDPE 235 (260)
T ss_pred EEEeCCCcc
Confidence 777755443
No 328
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=25.57 E-value=3.1e+02 Score=28.36 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=43.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVH 88 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y--~V~-~a~sg~eALe~L~e~---~~~pDLVLlDI~ 88 (596)
|..-+|.-+|-++...+.-+..++..++ .|. ...++.+.|..+... .+.||+||+|..
T Consensus 102 ~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 102 PEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4456899999999999999999988764 333 456677777665432 236999999986
No 329
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=25.41 E-value=5.9e+02 Score=26.20 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=43.1
Q ss_pred CCccEEEEEeCCHHHH--HHHHHHHHhCCCe-EE-EEC-----CHHHHHHHHHhcCCCceEEEEeCCC-CCCCHHH
Q 007601 31 PAGLRVLVVDDDITCL--RILEQMLRRCLYN-VT-TCS-----QAAVALDILRERKGCFDVVLSDVHM-PDMDGFK 96 (596)
Q Consensus 31 p~girVLIVDDd~~i~--~~L~~lL~~~~y~-V~-~a~-----sg~eALe~L~e~~~~pDLVLlDI~M-PdmdGle 96 (596)
+..+.|+|||+..... +.++.+++..+.. +. ... +...|..........-=|+++|+.+ +.-+-++
T Consensus 32 ~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 5678999999987655 7888888876655 22 221 4466666555444345678899986 4544444
No 330
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.40 E-value=2e+02 Score=30.01 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=38.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhc--c--CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 79 CFDVVLSDVHMPDMDGFKLLEHIGL--E--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 79 ~pDLVLlDI~MPdmdGleLl~~Ir~--~--~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
.+|+||+ -+.||- +++.++. . ..+||+=+ ..|-.+||. .++++++...+.+++++.
T Consensus 35 ~~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGI-------------N~G~lGFL~-~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 35 NPDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGV-------------HTGHLGFYT-DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEE-------------eCCCceecc-cCCHHHHHHHHHHHHcCC
Confidence 3788877 367773 4444432 2 57787744 347788999 578899999999988754
No 331
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=25.36 E-value=1e+02 Score=31.01 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=44.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe-C-CCCCCCHHH--HHHHHhccCCCCE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPDMDGFK--LLEHIGLEMDLPV 109 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlD-I-~MPdmdGle--Ll~~Ir~~~~ipV 109 (596)
+||+|+|........+...|++.++.+..+......+....+....+|-||+- = ..|+.++.+ +++++. ..++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 58999999988888888999888887765443322111111111137766652 1 123333332 333332 246887
Q ss_pred EEEc
Q 007601 110 IMMS 113 (596)
Q Consensus 110 IllT 113 (596)
+=+-
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 7553
No 332
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=25.16 E-value=2.7e+02 Score=28.47 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=43.7
Q ss_pred CceEEEEeCCCCC-CCH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 79 CFDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 79 ~pDLVLlDI~MPd-mdG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+++||++|+.--+ +.| .|+++.+.....-||++=-+-...+....+...|+.+-|.-
T Consensus 151 ~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLva 210 (229)
T COG1411 151 DPGLIVLDIGAVGTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVA 210 (229)
T ss_pred CCCeEEEEccccccccCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence 6899999997543 333 67888887666778888777778888888888999888764
No 333
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.16 E-value=4e+02 Score=26.13 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=50.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~--~y~V~~a~------sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
..+++|.++-..+.+.+.+.+.|+.. +.++..+. +.++.++.+.+. .+|+|++-+-+|...- ++.+.+
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~--~~~~~~ 121 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEI--WMRNHR 121 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHH--HHHHhH
Confidence 35689999999999999999999864 34443321 123345566654 4999999999997653 334444
Q ss_pred ccCCCCEEE
Q 007601 103 LEMDLPVIM 111 (596)
Q Consensus 103 ~~~~ipVIl 111 (596)
.....+|++
T Consensus 122 ~~~~~~v~~ 130 (177)
T TIGR00696 122 HLKPDAVMI 130 (177)
T ss_pred HhCCCcEEE
Confidence 333345544
No 334
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=25.14 E-value=5.2e+02 Score=26.43 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=54.4
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI~MPd---mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
..+..+..+.+.+.. --.|+++|+.-.+ ..-++++++|++.-.+||++--+-.+.+.+.+++..||+..+.-.
T Consensus 29 ~~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt 104 (254)
T TIGR00735 29 AGDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINT 104 (254)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 347777777776543 2358888987542 234677888876667999999999999999999999988876643
No 335
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.10 E-value=1.9e+02 Score=35.22 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=50.2
Q ss_pred CceEEEEe-CCCCCCCHHHH-HHHHhccC-CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 79 CFDVVLSD-VHMPDMDGFKL-LEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 79 ~pDLVLlD-I~MPdmdGleL-l~~Ir~~~-~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
.+.|+|+| ++|-...++.. ++.|.+-+ .+.+||+|. +.+.+...++.-+.-|-.++++.++|...+..++.+
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt--~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT--EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC--ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47888887 56655566664 44555433 455666663 344477788888888999999999999888887754
No 336
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=24.96 E-value=4.2e+02 Score=23.41 Aligned_cols=66 Identities=23% Similarity=0.087 Sum_probs=0.0
Q ss_pred CccE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-----HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 007601 32 AGLR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQA-----AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 32 ~gir-VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg-----~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
.|+. +.+++++....+.+++++.+..|.+...+.. .+.++.+.+....|-+|.+ |+.+|-+.++++
T Consensus 18 aGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~I----P~~~~~~~i~~~ 89 (100)
T PRK02228 18 AGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTL----GGGGGSGGLREK 89 (100)
T ss_pred cCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEE----CCCccchHHHHH
No 337
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=24.72 E-value=5e+02 Score=28.21 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=40.3
Q ss_pred ccEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 007601 33 GLRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL 98 (596)
Q Consensus 33 girVLIVDDd~~i-----~~~L~~lL~~~~y~V~~a~---------sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl 98 (596)
+-|+|||-|.... .+.++..|+..++++..+. +..++++.+++.. +|.||- .-+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHH
Confidence 3589999776443 3567788887676665443 3456677777654 898874 3444455555
Q ss_pred HHH
Q 007601 99 EHI 101 (596)
Q Consensus 99 ~~I 101 (596)
|.+
T Consensus 103 K~i 105 (382)
T cd08187 103 KAI 105 (382)
T ss_pred HHH
Confidence 544
No 338
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=24.71 E-value=4.5e+02 Score=27.54 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=63.1
Q ss_pred HHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh---ccCCCCEEEEcCCCCHHHHH
Q 007601 48 ILEQMLRRCLYNVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG---LEMDLPVIMMSADGRVSAVM 122 (596)
Q Consensus 48 ~L~~lL~~~~y~V~~a~s--g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir---~~~~ipVIllTa~~d~~~~~ 122 (596)
.++.-|+.-...+..... ..-..|.+... .||-+++|.+-...|.-.++..|+ ..+..||| .-.-.+...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvV-R~p~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVV-RPPVGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCee-eCCCCCHHHHH
Confidence 356666654344443322 22334555544 599999999887778878888875 23444555 55567888899
Q ss_pred HHHHcCCCeEEeCCCC-HHHHHHHHH
Q 007601 123 RGIRHGACDYLIKPIR-EEELKNIWQ 147 (596)
Q Consensus 123 eAl~~GA~DYL~KPl~-~eeL~~~l~ 147 (596)
++++.||...|..=++ .++-+..+.
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHHH
Confidence 9999999999885554 455444444
No 339
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=24.68 E-value=5.9e+02 Score=26.92 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=58.6
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------HHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 35 RVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------LRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 35 rVLIV--DDd~~i~---~~L~~lL~~~~y~V~~a~sg~eALe~-------L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
+|+|+ .+.+... +.+.+.|++.++++.........+.. ..+..+.+|+||+ -+.||- +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 47776 3444444 44555555667776654432221110 1111124787776 366773 344444
Q ss_pred c--cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 103 L--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 103 ~--~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
. ..++|++=+. .|=.+||. .++.+++...+.+++++.+
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 2 3567877543 46667888 7888999999999887543
No 340
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=24.49 E-value=5.6e+02 Score=29.70 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=51.4
Q ss_pred ceEEEEeCCCCC-CCH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHH-cCCCeEE------eCCCCHHHHHHHHH
Q 007601 80 FDVVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR-HGACDYL------IKPIREEELKNIWQ 147 (596)
Q Consensus 80 pDLVLlDI~MPd-mdG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~-~GA~DYL------~KPl~~eeL~~~l~ 147 (596)
=.|++.|+...+ +.| +++++.+...-.+|||.-.+-...+...++++ .||+.-+ .+-.+..+++..+.
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 479999998765 355 56788887778999999999999999999996 4565533 34567777776554
No 341
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=24.46 E-value=7.2e+02 Score=26.28 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=53.2
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 33 GLRVLVV-DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 33 girVLIV-DDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
.++++++ .++...++.++...+..+-.|....-..+..+++.. .|+++++ + -|+.+++.+. ..+|+|+
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~--gg~t~~EA~a--~g~PvI~ 298 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---P--GGITLSEAAA--LGVPVIL 298 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---C--CchHHHHHHH--hCCCEEE
Confidence 3565544 555555566666655433233333222233333332 5777653 2 2566666663 5678777
Q ss_pred EcCCCCH--HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 112 MSADGRV--SAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 112 lTa~~d~--~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
....+.. +......+.|+ ...+-+.++|...+..++.
T Consensus 299 ~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 299 YKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 5433322 11122224454 2334578888888887764
No 342
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=24.33 E-value=1.6e+02 Score=30.59 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=49.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH----------
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGFK---------- 96 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~-------sg~eALe~L~e~~~~pDLVLlDI~MPdmdGle---------- 96 (596)
|||||+-..-.+-..+...|+..++++...+ +.++..+.+.+.. ||+||-=.-+.+.+..|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999999999999999998888887653 5566666776654 89887655443322211
Q ss_pred -----HHHHHhccCCCCEEEEcCC
Q 007601 97 -----LLEHIGLEMDLPVIMMSAD 115 (596)
Q Consensus 97 -----Ll~~Ir~~~~ipVIllTa~ 115 (596)
.+.++.....+++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 1111113467899998874
No 343
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=24.33 E-value=3.9e+02 Score=26.16 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=33.0
Q ss_pred CceEEEEeCCCCCC-------CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcC-CCeE
Q 007601 79 CFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDY 132 (596)
Q Consensus 79 ~pDLVLlDI~MPdm-------dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~G-A~DY 132 (596)
..|.+++|..-++. -++++++.+. ..+|+++.-+- +.+.+.++++.+ +++.
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEE
Confidence 47888888865431 2456666654 46788876665 666677777766 5543
No 344
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.01 E-value=2.5e+02 Score=31.55 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 67 AVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 67 ~eALe~L~e~~~~pDLVLlDI~MPd-mdGleLl~~Ir~~-~~ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
+.+..+++ . .+|+|.+|..-.. ...++.+++|+.. +++|||+ -.-...+.+..++++||+...
T Consensus 227 ~r~~~L~~-a--G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVK-A--GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHH-h--CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 44444443 2 4899999985442 4567788888755 7888887 333456778888999998763
No 345
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.96 E-value=7e+02 Score=25.14 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=56.1
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCC-EEE-EcCCCCHHHHHHHHH
Q 007601 51 QMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP-VIM-MSADGRVSAVMRGIR 126 (596)
Q Consensus 51 ~lL~~~~-y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~-~ip-VIl-lTa~~d~~~~~eAl~ 126 (596)
..|...+ .-|....+.++++.+.+.-. .-.+=++.+.|-.-+.++.++++++.. +-| +++ .-.--+.+.+.++++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 3444433 34567778888887766431 123445666676677899999996432 222 333 333456778899999
Q ss_pred cCCCeEEeCCCCHHHHHH
Q 007601 127 HGACDYLIKPIREEELKN 144 (596)
Q Consensus 127 ~GA~DYL~KPl~~eeL~~ 144 (596)
+||. |+.-|.-..++.+
T Consensus 87 aGA~-FivsP~~~~~v~~ 103 (213)
T PRK06552 87 AGAQ-FIVSPSFNRETAK 103 (213)
T ss_pred cCCC-EEECCCCCHHHHH
Confidence 9986 5556744444443
No 346
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.95 E-value=2.8e+02 Score=29.44 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=57.8
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCCCEEEEcCCC-CHHHHHHHHHcCCCeEEe
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI~M-------PdmdGleLl~~Ir~~~~ipVIllTa~~-d~~~~~eAl~~GA~DYL~ 134 (596)
.++.++|.+.+++.. +|.+=+.+-- |+.| ++++++|+..-++|+++=-+.+ ..+...+++++|+...=.
T Consensus 152 ~T~pe~a~~Fv~~Tg--vD~LAvaiGt~HG~Y~~p~l~-~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 152 KTEPEKVKDFVERTG--CDMLAVSIGNVHGLEDIPRID-IPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred cCCHHHHHHHHHHhC--cCeeehhccccccCCCCCCcC-HHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEE
Confidence 578899999998764 8877666621 5444 7899999877789988864444 345677899999876544
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 007601 135 KPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 135 KPl~~eeL~~~l~~vlrk~ 153 (596)
- .+|+.++.+.++..
T Consensus 229 ~----Tel~~a~~~~~~~~ 243 (283)
T PRK07998 229 A----SDLRKAFITTVGKA 243 (283)
T ss_pred C----HHHHHHHHHHHHHH
Confidence 2 45655655555543
No 347
>PRK04457 spermidine synthase; Provisional
Probab=23.89 E-value=8.1e+02 Score=25.26 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=37.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC--LYNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~--~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI 87 (596)
..+|.+||=|+.+.+..++.+... .-.+. ...++.+.+. .....+|+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~---~~~~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA---VHRHSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH---hCCCCCCEEEEeC
Confidence 468999999999999988887532 12333 4567666654 3334699999996
No 348
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.85 E-value=7.7e+02 Score=24.97 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCC-C-CCC-CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC--CC
Q 007601 64 SQAAVALDILRERKGCFDVVLSDVH-M-PDM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP--IR 138 (596)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVLlDI~-M-Pdm-dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP--l~ 138 (596)
.+..+..+.+.+. --.++++|+. + .+. .-+++++++.+...+||++=-+-...+.+.+.++.|++..+.-. ++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~ 107 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFD 107 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcC
Confidence 4677766666553 1247788886 3 232 45889999976678999987778888889999999999877643 44
Q ss_pred HHHHHH
Q 007601 139 EEELKN 144 (596)
Q Consensus 139 ~eeL~~ 144 (596)
++.+..
T Consensus 108 ~~~l~~ 113 (228)
T PRK04128 108 LEFLEK 113 (228)
T ss_pred HHHHHH
Confidence 443333
No 349
>PRK03612 spermidine synthase; Provisional
Probab=23.60 E-value=3.6e+02 Score=30.91 Aligned_cols=58 Identities=28% Similarity=0.241 Sum_probs=37.3
Q ss_pred CCccEEEEEeCCHHHHHHHHH--HHHhC------CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQ--MLRRC------LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~--lL~~~------~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPd 91 (596)
+..-+|.+||=|+.+.+..++ .+... +-++. ...|+.+.++ ...+.+|+|++|..-|.
T Consensus 319 ~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~---~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 319 PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR---KLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---hCCCCCCEEEEeCCCCC
Confidence 333589999999999998887 34321 11232 4556655443 33346999999975554
No 350
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=23.45 E-value=7.8e+02 Score=27.71 Aligned_cols=55 Identities=25% Similarity=0.209 Sum_probs=31.7
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CHHH-HHHHHHhcCCCceEEEEeCC
Q 007601 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QAAV-ALDILRERKGCFDVVLSDVH 88 (596)
Q Consensus 33 girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~---sg~e-ALe~L~e~~~~pDLVLlDI~ 88 (596)
+.+|++|+.|.. ..+.++.+.+..+..+.... +..+ +.+.++... ..|+||+|.-
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA 184 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA 184 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC
Confidence 579999988853 33445555555565555432 3222 223333322 3699999984
No 351
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=23.30 E-value=46 Score=26.83 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=12.3
Q ss_pred CCCChHHHHHHHHh-hcC
Q 007601 316 GQIPPQTLAALHAE-LLG 332 (596)
Q Consensus 316 GkL~~ee~~imk~~-~~G 332 (596)
|+||++||++++.| ..|
T Consensus 1 G~Lt~~e~~~~~~Hp~~~ 18 (64)
T PF13487_consen 1 GKLTPEEREIIQQHPEYG 18 (64)
T ss_dssp -GS-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 78999999999984 334
No 352
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.23 E-value=5e+02 Score=22.61 Aligned_cols=83 Identities=14% Similarity=0.004 Sum_probs=48.2
Q ss_pred EEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceE-EEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 35 RVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDV-VLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 35 rVLIVDDd--~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDL-VLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
+|+++-.- ......+...|...+..+....+..+......... +-|+ |++...--..+-.++++.++. ..+++|+
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS~~g~~~~~~~~~~~a~~-~g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLT-PGDVVIAISFSGETKETVEAAEIAKE-RGAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCC-CCCEEEEEeCCCCCHHHHHHHHHHHH-cCCeEEE
Confidence 45555333 44455566667777777777777666554443222 2344 444443333445666666653 5789999
Q ss_pred EcCCCCHH
Q 007601 112 MSADGRVS 119 (596)
Q Consensus 112 lTa~~d~~ 119 (596)
+|+..+..
T Consensus 93 iT~~~~~~ 100 (139)
T cd05013 93 ITDSANSP 100 (139)
T ss_pred EcCCCCCh
Confidence 99977653
No 353
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.06 E-value=7.5e+02 Score=24.58 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=53.0
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pD-LVLlDI~MPd---mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
..+..++.+.+.+.. ++ ++++|+.--+ ..-+++++++.+...+||++=.+-...+.+.++++.|++..+.-.
T Consensus 29 ~~dp~~~a~~~~~~g--~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 29 IGDPVNAARIYNAKG--ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred CCCHHHHHHHHHHcC--CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 347777777776543 54 8889997542 234778888876678899887788888888888899988776653
No 354
>PRK05637 anthranilate synthase component II; Provisional
Probab=23.05 E-value=1.3e+02 Score=30.20 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=35.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
-||+|||-...+...+...|+..++.+..+..... ++.+... .||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEE
Confidence 47999999999999999999998887766554322 2223222 3777777
No 355
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=23.00 E-value=7.3e+02 Score=24.37 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 007601 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (596)
Q Consensus 67 ~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l 146 (596)
++..+++.. .|++|.-... +.-|..+++.+. ..+|||.... +. ..+.+..+-.+++..+.+.+++...+
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i 335 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAI 335 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHH
Confidence 444444432 4666553333 333555666663 4678775433 22 23445567888999999999999999
Q ss_pred HHHHH
Q 007601 147 QHVVR 151 (596)
Q Consensus 147 ~~vlr 151 (596)
..++.
T Consensus 336 ~~~~~ 340 (374)
T cd03801 336 LRLLD 340 (374)
T ss_pred HHHHc
Confidence 88764
No 356
>PRK05670 anthranilate synthase component II; Provisional
Probab=22.96 E-value=1.1e+02 Score=29.87 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=33.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
|||||-...+-..+.+.|++.++++..........+.+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999999999999999999888776554432112222222 3786666
No 357
>PRK01581 speE spermidine synthase; Validated
Probab=22.91 E-value=5e+02 Score=28.80 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=36.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHH--HH---hC---CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQM--LR---RC---LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~l--L~---~~---~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP 90 (596)
+..-+|.+||=|+.+.+.-+.. |. +. +-++. ...|+.+.+. .....||+||+|+-=|
T Consensus 172 ~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~~YDVIIvDl~DP 237 (374)
T PRK01581 172 ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSSLYDVIIIDFPDP 237 (374)
T ss_pred CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCCCccEEEEcCCCc
Confidence 4456899999999998887752 21 11 12343 4666666554 3334699999997433
No 358
>PRK00654 glgA glycogen synthase; Provisional
Probab=22.80 E-value=9.4e+02 Score=26.60 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=61.4
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 33 girVLIVDDd-~~i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
.++++|+-+- +...+.++.+.++.+..+. ...+.+.+-.++. ..|++++--. -+.-|+-+++.+. ..+|+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~----~aDv~v~PS~-~E~~gl~~lEAma--~G~p~ 383 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA----GADMFLMPSR-FEPCGLTQLYALR--YGTLP 383 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh----hCCEEEeCCC-CCCchHHHHHHHH--CCCCE
Confidence 4567777553 4455566666655443332 2223222223332 2577776432 2445666677664 35566
Q ss_pred EEEcCCCCHHHHHHHHHcC------CCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 110 IMMSADGRVSAVMRGIRHG------ACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~G------A~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|+ |..+.. .+.+..| .++|+..|-+.++|..++.+++..
T Consensus 384 V~-~~~gG~---~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~ 428 (466)
T PRK00654 384 IV-RRTGGL---ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALEL 428 (466)
T ss_pred EE-eCCCCc---cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 65 333332 2223344 789999999999999999887753
No 359
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=22.77 E-value=2.5e+02 Score=28.64 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=42.6
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 007601 34 LRVLVVDDDI------TCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (596)
Q Consensus 34 irVLIVDDd~------~i~~~L~~lL~~~~y~V~~a~s-g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ 106 (596)
||||++-+.. .....+...|.+.|++|..... .......+... .||+|.+-......-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH--cC
Confidence 5777775543 4566677777777888764443 33333444443 499998754333333344444442 46
Q ss_pred CCEEEE
Q 007601 107 LPVIMM 112 (596)
Q Consensus 107 ipVIll 112 (596)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 676653
No 360
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.69 E-value=5.2e+02 Score=26.56 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=54.4
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI~MPd---mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
..+..+..+.+.+.. --.|+++|+.-.+ ..-++++++|.....+||++=.+-...+.+.+.+..|++..+.-.
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs 104 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINT 104 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEECh
Confidence 346777777766543 2368999997653 234889999976678999887788888888888999998877653
No 361
>CHL00101 trpG anthranilate synthase component 2
Probab=22.67 E-value=99 Score=30.22 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=33.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007601 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 36 VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
|||||-...+-..+.+.|+..++.+..+......++.+... .||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999888877666443222222222 3777665
No 362
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.59 E-value=6.8e+02 Score=25.86 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=58.1
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd--~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
|++.|+..+ ....+.++..|.+.++.+....+.. ......|+||+ -+.||. +++.++.. .+||+=
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 345555333 4455556666766677666554422 11224788776 367774 44555544 888876
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
+. .|-.+|+. .++.+++...+.+++++..
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~~ 96 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWNF 96 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCCc
Confidence 54 34567877 5788999999998877543
No 363
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.58 E-value=1.6e+02 Score=28.99 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=35.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
+||+|||-.-.....+.+.|++.++++....+..+ + ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H----ccCCEEEE
Confidence 68999999998889999999999999887765422 2 14888877
No 364
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=22.51 E-value=3.1e+02 Score=27.82 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=46.9
Q ss_pred HHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCCEEEEcCCCCH
Q 007601 51 QMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRV 118 (596)
Q Consensus 51 ~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdG-------leLl~~Ir~~-----~~ipVIllTa~~d~ 118 (596)
..+++.+..+..+-+...-++.+...-...|+|++=..-|+..| ++-++++++. .++||.+.-+ -+.
T Consensus 100 ~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGG-I~~ 178 (220)
T PRK08883 100 QLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGG-VKV 178 (220)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECC-CCH
Confidence 44455566655544443333333322223677776444566444 4445555422 2366655444 457
Q ss_pred HHHHHHHHcCCCeEEeC
Q 007601 119 SAVMRGIRHGACDYLIK 135 (596)
Q Consensus 119 ~~~~eAl~~GA~DYL~K 135 (596)
+.+.+..++||+.++.=
T Consensus 179 eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 179 DNIREIAEAGADMFVAG 195 (220)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 78889999999988654
No 365
>PLN02335 anthranilate synthase
Probab=22.45 E-value=97 Score=31.31 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=43.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe-CCC-CCCCHHHHHHHHhc-cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-VHM-PDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlD-I~M-PdmdGleLl~~Ir~-~~~ipV 109 (596)
.-+|||||-...+-..+.+.|++.++.+..+......++.+... .||.||+- =-| |...|. ..+.++. ...+||
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~--~~d~iVisgGPg~p~d~~~-~~~~~~~~~~~~Pi 94 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRK--NPRGVLISPGPGTPQDSGI-SLQTVLELGPLVPL 94 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhccc-hHHHHHHhCCCCCE
Confidence 45899999777777889999998888776655421112223222 37766652 222 322221 2333432 345787
Q ss_pred EEE
Q 007601 110 IMM 112 (596)
Q Consensus 110 Ill 112 (596)
+=+
T Consensus 95 LGI 97 (222)
T PLN02335 95 FGV 97 (222)
T ss_pred EEe
Confidence 654
No 366
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=22.42 E-value=7.6e+02 Score=24.42 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=36.2
Q ss_pred HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|..+++.+. ..+|||.- ..+. ..+.+..+..+++.++-+.+++..++..++..
T Consensus 292 ~~~~~Ea~~--~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 292 GLVLLEAMA--CGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred ChHHHHHHh--cCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 444555552 46677753 3332 34456777788999999999999999888754
No 367
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=22.30 E-value=1.1e+02 Score=29.69 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=54.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHh--ccCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF-KLLEHIG--LEMDL 107 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGl-eLl~~Ir--~~~~i 107 (596)
..+.++++.|=|..... +....|. +.|..+..++.....+.+|+||+|-=.-..+=+ ..++.++ ..+..
T Consensus 46 ~~~~~~~Lle~D~RF~~-----~~~~~F~---fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~ 117 (162)
T PF10237_consen 46 KPRIQSFLLEYDRRFEQ-----FGGDEFV---FYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGG 117 (162)
T ss_pred CCCccEEEEeecchHHh-----cCCcceE---ECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccc
Confidence 34567777776664432 1110122 444444444443334569999999643221211 1222233 23467
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+||+.|+....+.+.+.+..-..+|..+
T Consensus 118 kii~~Tg~~~~~~~~~ll~~~~~~f~p~ 145 (162)
T PF10237_consen 118 KIILCTGEEMEELIKKLLGLRMCDFQPE 145 (162)
T ss_pred eEEEecHHHHHHHHHHHhCeeEEeEEec
Confidence 8999999888888888886666666654
No 368
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=22.28 E-value=7.1e+02 Score=25.24 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=55.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
.++++|+.+.+.. +.+++.++..+ ..|.......+..+++.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 3566666654432 33444444332 123333333333344332 4666653332 223666777763 466777
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
. +..+.. .+.+.. .+++..+-+.+++...+..++.
T Consensus 291 ~-~~~~~~---~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGGV---REVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCCh---hhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 332222 222222 5788889999999999988863
No 369
>PRK10867 signal recognition particle protein; Provisional
Probab=22.27 E-value=5.8e+02 Score=28.71 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=43.1
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEE---CCHHH----HHHHHHhcCCCceEEEEeCC--CC-CCCHHHHHH
Q 007601 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTC---SQAAV----ALDILRERKGCFDVVLSDVH--MP-DMDGFKLLE 99 (596)
Q Consensus 33 girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a---~sg~e----ALe~L~e~~~~pDLVLlDI~--MP-dmdGleLl~ 99 (596)
+.+|++||-|.. ..+.++.+.+..+..+... .+..+ +++..+. ..+|+||+|.- ++ +.+..+-+.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCcccCHHHHHHHH
Confidence 678999998853 3334444455556555543 24333 2233332 25999999983 22 223444444
Q ss_pred HHhc--cCCCCEEEEcCCCC
Q 007601 100 HIGL--EMDLPVIMMSADGR 117 (596)
Q Consensus 100 ~Ir~--~~~ipVIllTa~~d 117 (596)
.+.. .++--+.++.+...
T Consensus 207 ~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 207 AIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHhhCCCeEEEEEecccH
Confidence 4432 23333455555443
No 370
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.20 E-value=4.4e+02 Score=28.62 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=40.2
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 007601 34 LRVLVVDDDIT-----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (596)
Q Consensus 34 irVLIVDDd~~-----i~~~L~~lL~~~~y~V~~a---------~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~ 99 (596)
-|+|||-|... ..+.++..|+..+.++..+ .+..++.+.+++. .+|+||- .-+..-+++.+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE--GCDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 58999987654 3456777777766655444 3455666777765 4898874 34555566665
Q ss_pred HH
Q 007601 100 HI 101 (596)
Q Consensus 100 ~I 101 (596)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 55
No 371
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.19 E-value=9.8e+02 Score=25.59 Aligned_cols=102 Identities=24% Similarity=0.309 Sum_probs=58.8
Q ss_pred cEEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH----H------------HhcCCCceEEEEeCCCCCC
Q 007601 34 LRVLVV--DDDITC---LRILEQMLRRCLYNVTTCSQAAVALDI----L------------RERKGCFDVVLSDVHMPDM 92 (596)
Q Consensus 34 irVLIV--DDd~~i---~~~L~~lL~~~~y~V~~a~sg~eALe~----L------------~e~~~~pDLVLlDI~MPdm 92 (596)
.+|.|+ .+.+.. .+.+...|...++++.........+.. . ......+|+||+ -+.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 457777 333433 445555566667777765443222210 0 011113566665 367
Q ss_pred CH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 93 DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 93 dG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
|| +..++.+. ...+||+=+. .|-.+||.- ++.+++..++.+++++.+
T Consensus 82 DGT~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 82 DGTILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRDY 130 (306)
T ss_pred CHHHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCCc
Confidence 88 43444432 3567887553 366788884 778999999999987653
No 372
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=22.16 E-value=6.1e+02 Score=32.50 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=65.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCC-CCCH-HHHHHHHhc
Q 007601 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHIGL 103 (596)
Q Consensus 33 girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a~---sg~eALe~L~e~~~~pDLVLlDI~MP-dmdG-leLl~~Ir~ 103 (596)
.-+|++. |-|..=..++..+|+..||+|.-.. ..++.++.+.+.. +|+|.+-.-|. .+.. .++++.++.
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~ 828 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMER 828 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHh
Confidence 3477777 7777778888888999999987543 4667777777664 99999988775 3433 456777753
Q ss_pred -cCCCCEEEEcCCCCHHH-HHHH-HHc-CCCeEEeC
Q 007601 104 -EMDLPVIMMSADGRVSA-VMRG-IRH-GACDYLIK 135 (596)
Q Consensus 104 -~~~ipVIllTa~~d~~~-~~eA-l~~-GA~DYL~K 135 (596)
..++||++=-+.-.... +.+. -.+ |++.|-.-
T Consensus 829 ~g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~D 864 (1229)
T PRK09490 829 QGFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTD 864 (1229)
T ss_pred cCCCCeEEEEeeccchhhhhhhhhhcccCCcEEecC
Confidence 45677776443333222 2221 133 88777653
No 373
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=21.94 E-value=1.5e+02 Score=32.06 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=50.8
Q ss_pred ECCHHHHHHHHH-hcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCe
Q 007601 63 CSQAAVALDILR-ERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD 131 (596)
Q Consensus 63 a~sg~eALe~L~-e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~D 131 (596)
..|..||+..+. ...+.-|+|++- |.+.=+++++.++....+||...--.++...+..|.+.|..|
T Consensus 224 p~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 224 PANRREALREVALDIEEGADMVMVK---PALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred CCCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 346667776554 333467888775 677789999999887789999988888898888888988765
No 374
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.93 E-value=5.4e+02 Score=26.43 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCC-CC--HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHH-HcCCCeEEe
Q 007601 66 AAVALDILRERKGCFDVVLSDVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (596)
Q Consensus 66 g~eALe~L~e~~~~pDLVLlDI~MPd-md--GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl-~~GA~DYL~ 134 (596)
..+..+.+.+.. --.+++.|+.-.+ +. -+++++++++...+|||.--+-.+.+.+.+++ ..|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 455556665442 2358888885432 22 26778888777889999998899999999999 789987644
No 375
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=21.83 E-value=5.9e+02 Score=27.94 Aligned_cols=92 Identities=10% Similarity=0.036 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHHHHHHHhc-cCCCCEEEEcCCCCH
Q 007601 44 TCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD----MDGFKLLEHIGL-EMDLPVIMMSADGRV 118 (596)
Q Consensus 44 ~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd----mdGleLl~~Ir~-~~~ipVIllTa~~d~ 118 (596)
.-.+.+...|...+|+.+.. .+++|+|++...-.- ...++.++++++ .++.+||+--.+..
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~- 76 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQ- 76 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccc-
Confidence 33466777787778875431 124899999865443 246888888864 45666665443333
Q ss_pred HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 007601 119 SAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 119 ~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~v 149 (596)
....++.++...|++.-+-....+...+...
T Consensus 77 ~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 77 SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 2334445666788999888877777777654
No 376
>PRK10060 RNase II stability modulator; Provisional
Probab=21.72 E-value=8.9e+02 Score=28.33 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHHh---ccCCCCEEEEcCCCC
Q 007601 48 ILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIG---LEMDLPVIMMSADGR 117 (596)
Q Consensus 48 ~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~M----P-dmdGleLl~~Ir---~~~~ipVIllTa~~d 117 (596)
.+-..|+..|+.+. -+.++...+..+...+ +|.|=+|-.+ . +.....+++.|- +..++.||. .+-..
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA-eGVEt 621 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA-EGVET 621 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE-ecCCC
Confidence 34455667788775 4677888888888764 9999999643 2 234556666652 344666664 45566
Q ss_pred HHHHHHHHHcCCCe----EEeCCCCHHHHHHHHHH
Q 007601 118 VSAVMRGIRHGACD----YLIKPIREEELKNIWQH 148 (596)
Q Consensus 118 ~~~~~eAl~~GA~D----YL~KPl~~eeL~~~l~~ 148 (596)
.+....+.+.|++. |+.||...+++...++.
T Consensus 622 ~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 622 AKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred HHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 66666666888863 58899999998775543
No 377
>PRK01362 putative translaldolase; Provisional
Probab=21.71 E-value=4.9e+02 Score=26.38 Aligned_cols=80 Identities=24% Similarity=0.104 Sum_probs=50.1
Q ss_pred HHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeC-CC--CCCCHHHHHHHHh----ccCCCCEEEEcCCCCHHHHHH
Q 007601 53 LRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDV-HM--PDMDGFKLLEHIG----LEMDLPVIMMSADGRVSAVMR 123 (596)
Q Consensus 53 L~~~~y--~V~~a~sg~eALe~L~e~~~~pDLVLlDI-~M--PdmdGleLl~~Ir----~~~~ipVIllTa~~d~~~~~e 123 (596)
|+..|+ .++.+.+..+|+...... .+.|-.=+ +| .+.||+++++.+. ....-.-|+..+..+...+.+
T Consensus 97 L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~ 173 (214)
T PRK01362 97 LSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLE 173 (214)
T ss_pred HHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHH
Confidence 333444 456788888888777643 34322111 12 3579999999884 222234555667778888999
Q ss_pred HHHcCCCeEEeCC
Q 007601 124 GIRHGACDYLIKP 136 (596)
Q Consensus 124 Al~~GA~DYL~KP 136 (596)
+...|++ +++=|
T Consensus 174 ~~~~G~d-~iTi~ 185 (214)
T PRK01362 174 AALAGAD-IATIP 185 (214)
T ss_pred HHHcCCC-EEecC
Confidence 9999998 44433
No 378
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=21.69 E-value=3.9e+02 Score=26.62 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=45.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC-CCC-CCCHHHH-------------HH
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV-HMP-DMDGFKL-------------LE 99 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI-~MP-dmdGleL-------------l~ 99 (596)
+|+++|-|...-....+.+..-..- -...+|.+.+ +||+|+=- +-| ..||+.- ++
T Consensus 80 ~v~fiDTD~itT~~~~~~y~gr~~P--------~~~~~i~~~r--~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~ 149 (187)
T COG3172 80 KVAFIDTDFLTTQAFCKKYEGREHP--------FLQALIAEYR--FDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLE 149 (187)
T ss_pred ceEEEeccHHHHHHHHHHHcccCCc--------hHHHHHhhcc--cceEEEcCCCCceeCCCccccccHhHHHHHHHHHH
Confidence 8999999999988888888653211 2234555554 99888622 223 3455432 22
Q ss_pred HHhccCCCCEEEEcCCCCH
Q 007601 100 HIGLEMDLPVIMMSADGRV 118 (596)
Q Consensus 100 ~Ir~~~~ipVIllTa~~d~ 118 (596)
+.-.....|+|++++.+..
T Consensus 150 ~~L~~~~~~~v~i~~~~y~ 168 (187)
T COG3172 150 QMLEENNIPFVVIEGEDYL 168 (187)
T ss_pred HHHHHhCCcEEEEcCCCHH
Confidence 2112347899988876443
No 379
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.49 E-value=9.1e+02 Score=24.96 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 95 leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
++.++++++..++|||...+-.+.+.+.+++..||+..
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 57788887666899999999999999999999998754
No 380
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=21.48 E-value=1.9e+02 Score=29.92 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=36.5
Q ss_pred EEEEeCCHHHHHH----------HHHHHHhCCCeEEEEC--CHHHHHHHHHhc---CCCceEEEEeCCC
Q 007601 36 VLVVDDDITCLRI----------LEQMLRRCLYNVTTCS--QAAVALDILRER---KGCFDVVLSDVHM 89 (596)
Q Consensus 36 VLIVDDd~~i~~~----------L~~lL~~~~y~V~~a~--sg~eALe~L~e~---~~~pDLVLlDI~M 89 (596)
|.|||.+...+.. |...++.++++|..+. +.++..+.+.+. .+.|.+||+|..+
T Consensus 174 iaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 174 IAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred EEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEeccc
Confidence 7888988765544 5666677899998776 355554544432 3368999998754
No 381
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.15 E-value=5.4e+02 Score=26.12 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=52.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC-------CCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMP-------DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MP-------dmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
++.+.+++.+..+. .+|-|.+--..| .-.|++.+++++....+|+|.+-+ -+.+.+.+.++.||++.-
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG-i~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG-INLENVPEVLEAGADGVA 184 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC-CCHHHHHHHHHhCCCeEE
Confidence 67788888887653 389888766544 346999999998767799999877 456778899999998763
No 382
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.14 E-value=4.5e+02 Score=25.44 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=56.7
Q ss_pred HHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-C----CCHHHHHHHHh---ccCCCCEEEEcCCCC
Q 007601 48 ILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHIG---LEMDLPVIMMSADGR 117 (596)
Q Consensus 48 ~L~~lL~~~~y~V~~--a~sg~eALe~L~e~~~~pDLVLlDI~MP-d----mdGleLl~~Ir---~~~~ipVIllTa~~d 117 (596)
.....|+..|+.+.. +..+..-+..+...+ ||.|-+|..+- + .....+++.+. ...++.|| .++-++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCC
Confidence 334555666877653 555666677777654 99999997643 1 12344555552 33455554 567778
Q ss_pred HHHHHHHHHcCCCe----EEeCCCCH
Q 007601 118 VSAVMRGIRHGACD----YLIKPIRE 139 (596)
Q Consensus 118 ~~~~~eAl~~GA~D----YL~KPl~~ 139 (596)
.+....+.+.|++. |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 88888888999863 57788654
No 383
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=21.10 E-value=3.3e+02 Score=30.39 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=45.1
Q ss_pred CCCCccEEEEEeCCHHHHHHHH--HHHHhC------CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 007601 29 QFPAGLRVLVVDDDITCLRILE--QMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM 92 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~--~lL~~~------~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdm 92 (596)
.+|.-..|-.||=||.+.+..+ ..|+.. +-.|..+. ++|...++...+.+|.||+|..=|+.
T Consensus 309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~t 378 (508)
T COG4262 309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPST 378 (508)
T ss_pred hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCC
Confidence 4566678999999999998888 566543 22455443 36777777766679999999877754
No 384
>PLN00191 enolase
Probab=21.08 E-value=7.2e+02 Score=28.22 Aligned_cols=108 Identities=14% Similarity=0.228 Sum_probs=65.6
Q ss_pred EeCCHHHHHHHHHHHHhCCCe----------------------EE---------EECCHHHHHHHHHhcCCCceEEEEeC
Q 007601 39 VDDDITCLRILEQMLRRCLYN----------------------VT---------TCSQAAVALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 39 VDDd~~i~~~L~~lL~~~~y~----------------------V~---------~a~sg~eALe~L~e~~~~pDLVLlDI 87 (596)
++++...++.+.+.++..+|+ +. ..-+.++++++++.-.++++++.+.=
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 467777788888888755442 21 11378888888877544577777654
Q ss_pred CCCCCCHHHHHHHHhccCCCCEEEEcC-CCCHHHHHHHHHcCCCe-EEeCCCCHHHHHHHHH
Q 007601 88 HMPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQ 147 (596)
Q Consensus 88 ~MPdmdGleLl~~Ir~~~~ipVIllTa-~~d~~~~~eAl~~GA~D-YL~KPl~~eeL~~~l~ 147 (596)
-++..| ++-.++|++...+||+.==. ..+.....++++.++.| +++|+-...-|..+++
T Consensus 319 Pl~~~D-~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~ 379 (457)
T PLN00191 319 PFDQDD-WEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIE 379 (457)
T ss_pred CCCccc-HHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHH
Confidence 454333 55566776555666554111 14467788899777765 5778865444444433
No 385
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.95 E-value=3.6e+02 Score=27.34 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhccCCCCEEE---E--cCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEMDLPVIM---M--SADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir~~~~ipVIl---l--Ta~~d~~~~~eAl~~GA~DYL~KP 136 (596)
.+..++++.+.+.. .+++.+|+.++- .-|.++++.|++. +.+|++ + .+......+..+.+.|++-+..-+
T Consensus 12 ~~~~~~l~~~~~~~--~~~~~ikvg~~~f~~~G~~~i~~l~~~-~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~ 88 (230)
T PRK00230 12 PSKEEALAFLDQLD--PAVLFVKVGMELFTAGGPQFVRELKQR-GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHA 88 (230)
T ss_pred CCHHHHHHHHHhcC--CcccEEEEcHHHHHhcCHHHHHHHHhc-CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcc
Confidence 35566777776543 556667776652 3567777777643 233332 1 111223344456688888777777
Q ss_pred CCHHHH
Q 007601 137 IREEEL 142 (596)
Q Consensus 137 l~~eeL 142 (596)
..-.+.
T Consensus 89 ~ag~~~ 94 (230)
T PRK00230 89 SGGPRM 94 (230)
T ss_pred cCCHHH
Confidence 544443
No 386
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=20.90 E-value=5.2e+02 Score=28.14 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=55.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHhccCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDG--FKLLEHIGLEMDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y-~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdG--leLl~~Ir~~~~ip 108 (596)
+.+|+-||-++...+..+.-++..+. .+. .+.+..+.+.. ....+|+|++| |--.| -++++.|.....-.
T Consensus 255 ~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~---~~~~~D~vi~D---PPr~G~~~~~l~~l~~~~p~~ 328 (374)
T TIGR02085 255 DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA---QMSAPELVLVN---PPRRGIGKELCDYLSQMAPKF 328 (374)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh---cCCCCCEEEEC---CCCCCCcHHHHHHHHhcCCCe
Confidence 35899999999999988888876654 232 45566554432 11249999999 43334 35666664322224
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
||.++.. -...++++-.. .+|-++
T Consensus 329 ivyvsc~-p~TlaRDl~~L--~gy~l~ 352 (374)
T TIGR02085 329 ILYSSCN-AQTMAKDIAEL--SGYQIE 352 (374)
T ss_pred EEEEEeC-HHHHHHHHHHh--cCceEE
Confidence 6656543 33444554444 345444
No 387
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=20.81 E-value=4.8e+02 Score=29.54 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=45.9
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCC
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGAC 130 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-------mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~ 130 (596)
.++.+.+++.+..+. .+|.|.+--..|. --|++.++++.....+||+.+-+- +.+.+.+.++.|++
T Consensus 395 ~S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 395 VSCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred EeCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 356777776655432 4888875433321 127888888876678999988665 57778889999988
No 388
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.57 E-value=4.8e+02 Score=26.77 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHc-----C-CCeEEe
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-----G-ACDYLI 134 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPdm-dG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~-----G-A~DYL~ 134 (596)
+..+.++.+.+.. --.+|++|+.-.++ .| ++++++++...++|||.--+-.+.+...++.+. | +.+-+.
T Consensus 145 ~~~e~~~~~~~~g-~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 145 DPVSLLKRLKEYG-LEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred CHHHHHHHHHhcC-CCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 4456666665442 24899999976543 33 678888876678999998888888888888875 5 776654
No 389
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.54 E-value=5.6e+02 Score=26.23 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHH-h--ccCCCCEEEEcCCC
Q 007601 47 RILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHI-G--LEMDLPVIMMSADG 116 (596)
Q Consensus 47 ~~L~~lL~~~~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MP-----dmdGleLl~~I-r--~~~~ipVIllTa~~ 116 (596)
..+-..|+..|+.+ .-+.+|-..+..+.+.+ ||.|=+|-.+- +.....+++.| . +.-++.||. -+-.
T Consensus 139 ~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vva-EGVE 215 (256)
T COG2200 139 LALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA-EGVE 215 (256)
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEE-eecC
Confidence 33444556667665 46888999999998765 99999997653 22344566665 2 334555554 3444
Q ss_pred CHHHHHHHHHcCCC----eEEeCCCCHHHHHHHHH
Q 007601 117 RVSAVMRGIRHGAC----DYLIKPIREEELKNIWQ 147 (596)
Q Consensus 117 d~~~~~eAl~~GA~----DYL~KPl~~eeL~~~l~ 147 (596)
..+......+.|++ .|+.||...+++...+.
T Consensus 216 t~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 216 TEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred CHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 45555555688987 36889998877766554
No 390
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=20.51 E-value=8.5e+02 Score=27.32 Aligned_cols=100 Identities=14% Similarity=0.241 Sum_probs=62.5
Q ss_pred CccEEEEEeC---CH-HHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 007601 32 AGLRVLVVDD---DI-TCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (596)
Q Consensus 32 ~girVLIVDD---d~-~i~~~L~~lL~~~-~y~--V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd------------m 92 (596)
++..++.||- +. ...+.++.+-+.+ ... +..+.+.++|..++.. ..|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCc
Confidence 4788899987 43 3333444443332 222 3367888888888764 3787754321 11 1
Q ss_pred CHHHHHHHHh---ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 93 dGleLl~~Ir---~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
--+.++..+. ....+|||.=-+-.....+.+|+.+||+-...=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 1234444442 235789888778888999999999999987664
No 391
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.37 E-value=4.7e+02 Score=28.33 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHH
Q 007601 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (596)
Q Consensus 45 i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eA 124 (596)
..+.|.+..++.|..+.+-.-..++++++.+. ++-++=|--.++.-+.|++++.. ...|||+=|+....+.+..|
T Consensus 77 ~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~----~v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGmatl~Ei~~A 151 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLSTPFDLESADFLEDL----GVPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGMATLEEIEAA 151 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc----CCCEEEECcccccCHHHHHHHHh-cCCcEEEECCCCCHHHHHHH
Confidence 44555566666677776555556677777653 33345555567777999999964 47799999988887777666
Q ss_pred H----HcCCC--eEEe------CCCCHHHH
Q 007601 125 I----RHGAC--DYLI------KPIREEEL 142 (596)
Q Consensus 125 l----~~GA~--DYL~------KPl~~eeL 142 (596)
+ +.|.. ++.+ .|...+++
T Consensus 152 v~~i~~~G~~~~~i~llhC~s~YP~~~~~~ 181 (329)
T TIGR03569 152 VGVLRDAGTPDSNITLLHCTTEYPAPFEDV 181 (329)
T ss_pred HHHHHHcCCCcCcEEEEEECCCCCCCcccC
Confidence 5 24554 2544 46555554
No 392
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=20.35 E-value=4e+02 Score=28.33 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=58.0
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCC--------CCCCCHHHHHHHHhccCCCCEEEEcCCC-CHHHHHHHHHcCCCeEE
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDVH--------MPDMDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI~--------MPdmdGleLl~~Ir~~~~ipVIllTa~~-d~~~~~eAl~~GA~DYL 133 (596)
.++.++|.+.+++.. +|.+=+-+- -|..| |+++++|++.-++|+++=-+.+ ..+...+++++|+.-.=
T Consensus 154 ~T~peea~~Fv~~Tg--vD~LAvaiGt~HG~Y~~~p~Ld-fd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiN 230 (286)
T PRK12738 154 LTDPQEAKRFVELTG--VDSLAVAIGTAHGLYSKTPKID-FQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVN 230 (286)
T ss_pred CCCHHHHHHHHHHhC--CCEEEeccCcccCCCCCCCcCC-HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 668999999988754 887776662 25566 8999999876789988854333 35667889999976543
Q ss_pred eCCCCHHHHHHHHHHHHHhh
Q 007601 134 IKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 134 ~KPl~~eeL~~~l~~vlrk~ 153 (596)
. -.+|+.+..+.++..
T Consensus 231 i----~T~l~~a~~~~~~~~ 246 (286)
T PRK12738 231 V----ATELKIAFAGAVKAW 246 (286)
T ss_pred e----CcHHHHHHHHHHHHH
Confidence 3 235666666555543
No 393
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.28 E-value=7.8e+02 Score=24.83 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=42.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHH
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHI 101 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y--~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdm-dGleLl~~I 101 (596)
+.+|..||=.+...+..++.+...+. .+. ...+..+..... ...+|+|++...+.-. +-.++++.+
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~~~~~~~~~l~~~ 135 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFHAVLEWVADPKSVLQTL 135 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEehhHHHhhCCHHHHHHHH
Confidence 57899999999999999888876543 233 344554432222 2359999987655322 334556665
No 394
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=20.11 E-value=2.4e+02 Score=28.63 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=34.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHH
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVAL 70 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eAL 70 (596)
+++|.|||=..-.+..+++.|++.++++....+.++..
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~ 38 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL 38 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHh
Confidence 36899999999999999999999999999988887743
No 395
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=20.08 E-value=9.9e+02 Score=24.84 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCH-----
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE----- 139 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~----- 139 (596)
+.++..+++.. .|++++=.. .+.-|+-+++.+. ..+|||. |..+. ..+.+..|.++|+.++-+.
T Consensus 270 ~~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a--~G~PvI~-s~~~~---~~e~i~~~~~G~~~~~~~~~~~~~ 338 (388)
T TIGR02149 270 PKEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA--CGTPVVA-SATGG---IPEVVVDGETGFLVPPDNSDADGF 338 (388)
T ss_pred CHHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH--cCCCEEE-eCCCC---HHHHhhCCCceEEcCCCCCcccch
Confidence 34455555532 577665322 2334666666663 5678876 33333 3455677888999998777
Q ss_pred -HHHHHHHHHHHH
Q 007601 140 -EELKNIWQHVVR 151 (596)
Q Consensus 140 -eeL~~~l~~vlr 151 (596)
++|.+.+..++.
T Consensus 339 ~~~l~~~i~~l~~ 351 (388)
T TIGR02149 339 QAELAKAINILLA 351 (388)
T ss_pred HHHHHHHHHHHHh
Confidence 788888877654
No 396
>PLN02316 synthase/transferase
Probab=20.07 E-value=1.2e+03 Score=29.43 Aligned_cols=114 Identities=9% Similarity=0.084 Sum_probs=61.3
Q ss_pred ccEEEEEeC--CHHHHHHHHHHHHhCCC----eEEEECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 007601 33 GLRVLVVDD--DITCLRILEQMLRRCLY----NVTTCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (596)
Q Consensus 33 girVLIVDD--d~~i~~~L~~lL~~~~y----~V~~a~sg~eALe-~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~ 105 (596)
..+++|+-+ ++.....++.+....+. .|..+....+.+. .+.. ..|++++=- +-+--|+-.++.++ .
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya---aADiflmPS-~~EP~GLvqLEAMa--~ 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA---GADFILVPS-IFEPCGLTQLTAMR--Y 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH---hCcEEEeCC-cccCccHHHHHHHH--c
Confidence 456777764 34444555555553321 2322222223322 2222 267777643 33445777777765 4
Q ss_pred CCCEEEEcCCCCHHHHHHH---------HHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 106 DLPVIMMSADGRVSAVMRG---------IRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eA---------l~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
.+|+|+...-+-.+.+... ...+.++|+..|.+++.|..++.+++..
T Consensus 943 GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 943 GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 5555553222323333221 0125789999999999999999988764
No 397
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=20.05 E-value=1.5e+02 Score=31.33 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=38.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~-----y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP 90 (596)
=+|.+||=|+.+.+.-++.|.... -.+. ...||. +.+++..+.+|+||+|..=|
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~---~~v~~~~~~fDvIi~D~tdp 160 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV---EFLRDCEEKFDVIIVDSTDP 160 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH---HHHHhCCCcCCEEEEcCCCC
Confidence 378999999999999999887542 1222 444544 55555444699999999877
Done!