Query 007601
Match_columns 596
No_of_seqs 408 out of 2408
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1E-24 3.6E-29 200.6 16.4 122 29-152 8-133 (134)
2 3gl9_A Response regulator; bet 99.9 9.1E-21 3.1E-25 166.7 16.9 116 34-151 3-121 (122)
3 3f6p_A Transcriptional regulat 99.9 8E-21 2.7E-25 166.3 16.1 117 34-152 3-119 (120)
4 3t6k_A Response regulator rece 99.9 2.1E-20 7E-25 167.5 17.7 119 33-153 4-125 (136)
5 2lpm_A Two-component response 99.8 6.4E-23 2.2E-27 186.3 1.0 115 31-151 6-121 (123)
6 3r0j_A Possible two component 99.8 1.3E-19 4.5E-24 179.3 23.9 120 32-153 22-142 (250)
7 2r25_B Osmosensing histidine p 99.8 2.8E-20 9.5E-25 166.0 16.3 120 33-152 2-127 (133)
8 3mm4_A Histidine kinase homolo 99.8 3.5E-20 1.2E-24 179.2 16.2 120 32-153 60-197 (206)
9 3h1g_A Chemotaxis protein CHEY 99.8 8.5E-20 2.9E-24 161.4 16.5 119 32-151 4-126 (129)
10 3m6m_D Sensory/regulatory prot 99.8 1.6E-19 5.5E-24 163.3 16.5 120 31-152 12-136 (143)
11 2a9o_A Response regulator; ess 99.8 3E-19 1E-23 154.1 17.1 117 34-152 2-118 (120)
12 1a04_A Nitrate/nitrite respons 99.8 2.2E-19 7.5E-24 172.6 17.9 162 32-195 4-176 (215)
13 2pl1_A Transcriptional regulat 99.8 4.7E-19 1.6E-23 153.4 18.3 118 34-153 1-119 (121)
14 1zgz_A Torcad operon transcrip 99.8 4.7E-19 1.6E-23 153.9 17.9 118 34-153 3-120 (122)
15 1kgs_A DRRD, DNA binding respo 99.8 8.6E-19 3E-23 169.0 21.3 120 33-154 2-122 (225)
16 3rqi_A Response regulator prot 99.8 4.5E-20 1.5E-24 174.4 12.0 120 32-153 6-126 (184)
17 2qzj_A Two-component response 99.8 2.9E-19 1E-23 160.0 16.6 120 32-153 3-122 (136)
18 3gt7_A Sensor protein; structu 99.8 3.4E-19 1.2E-23 162.8 17.4 121 32-154 6-129 (154)
19 3crn_A Response regulator rece 99.8 3.9E-19 1.3E-23 157.8 17.3 120 33-154 3-123 (132)
20 3hv2_A Response regulator/HD d 99.8 4.7E-19 1.6E-23 161.2 18.2 123 30-154 11-135 (153)
21 1dbw_A Transcriptional regulat 99.8 5E-19 1.7E-23 155.2 17.6 118 33-152 3-121 (126)
22 1xhf_A DYE resistance, aerobic 99.8 5.9E-19 2E-23 153.6 17.5 118 34-153 4-121 (123)
23 3q9s_A DNA-binding response re 99.8 2E-19 6.9E-24 179.0 16.1 154 33-188 37-197 (249)
24 3jte_A Response regulator rece 99.8 7.4E-19 2.5E-23 157.2 17.9 123 33-155 3-126 (143)
25 1zh2_A KDP operon transcriptio 99.8 4.8E-19 1.6E-23 153.0 16.2 118 34-153 2-119 (121)
26 3lua_A Response regulator rece 99.8 1.1E-19 3.7E-24 162.4 12.5 122 32-155 3-130 (140)
27 1srr_A SPO0F, sporulation resp 99.8 4.5E-19 1.5E-23 154.8 15.9 116 34-151 4-120 (124)
28 1yio_A Response regulatory pro 99.8 6.4E-20 2.2E-24 175.2 11.2 157 32-191 3-160 (208)
29 1i3c_A Response regulator RCP1 99.8 7.2E-19 2.5E-23 159.5 17.6 123 31-153 6-138 (149)
30 1tmy_A CHEY protein, TMY; chem 99.8 6.2E-19 2.1E-23 152.8 16.1 116 33-150 2-119 (120)
31 4e7p_A Response regulator; DNA 99.8 5.4E-19 1.9E-23 160.2 16.4 124 30-155 17-143 (150)
32 1p6q_A CHEY2; chemotaxis, sign 99.8 4.6E-19 1.6E-23 155.5 15.3 120 31-152 4-127 (129)
33 3hdv_A Response regulator; PSI 99.8 8.8E-19 3E-23 155.4 17.3 122 31-153 5-128 (136)
34 1jbe_A Chemotaxis protein CHEY 99.8 1E-18 3.5E-23 153.1 17.3 119 32-152 3-125 (128)
35 3grc_A Sensor protein, kinase; 99.8 3.1E-19 1.1E-23 159.1 14.3 123 31-155 4-130 (140)
36 3heb_A Response regulator rece 99.8 1.1E-18 3.8E-23 158.2 18.0 122 32-153 3-136 (152)
37 3b2n_A Uncharacterized protein 99.8 7.7E-19 2.6E-23 156.1 16.2 119 33-153 3-124 (133)
38 3h5i_A Response regulator/sens 99.8 1.9E-19 6.3E-24 161.5 12.1 123 32-155 4-127 (140)
39 3kto_A Response regulator rece 99.8 2.4E-19 8.2E-24 160.0 12.7 121 32-154 5-128 (136)
40 3hdg_A Uncharacterized protein 99.8 7.1E-19 2.4E-23 156.2 15.7 122 32-155 6-128 (137)
41 3kht_A Response regulator; PSI 99.8 8.3E-19 2.8E-23 157.3 16.3 122 32-155 4-131 (144)
42 2oqr_A Sensory transduction pr 99.8 2E-18 6.8E-23 167.3 20.1 119 33-153 4-122 (230)
43 3eod_A Protein HNR; response r 99.8 6.4E-19 2.2E-23 155.1 15.1 120 32-153 6-127 (130)
44 3ilh_A Two component response 99.8 1.2E-18 4.2E-23 155.3 17.1 123 31-153 7-140 (146)
45 1mb3_A Cell division response 99.8 6.8E-19 2.3E-23 153.1 14.9 117 34-152 2-121 (124)
46 3hzh_A Chemotaxis response reg 99.8 8E-19 2.7E-23 160.9 15.8 121 31-151 34-156 (157)
47 1k68_A Phytochrome response re 99.8 1.5E-18 5.2E-23 153.0 17.0 122 33-154 2-133 (140)
48 3nhm_A Response regulator; pro 99.8 8.9E-19 3E-23 154.5 15.3 120 32-155 3-125 (133)
49 3f6c_A Positive transcription 99.8 4.5E-19 1.5E-23 156.5 13.3 121 33-155 1-123 (134)
50 3cnb_A DNA-binding response re 99.8 2.2E-18 7.6E-23 153.1 17.6 122 31-154 6-132 (143)
51 1dz3_A Stage 0 sporulation pro 99.8 1E-18 3.5E-23 154.1 15.0 119 33-153 2-124 (130)
52 2gwr_A DNA-binding response re 99.8 2E-18 6.7E-23 169.3 18.6 119 33-153 5-123 (238)
53 3i42_A Response regulator rece 99.8 5.2E-19 1.8E-23 155.1 12.6 118 33-153 3-123 (127)
54 3luf_A Two-component system re 99.8 1.1E-18 3.7E-23 175.3 16.7 122 32-154 123-247 (259)
55 3n0r_A Response regulator; sig 99.8 1.4E-19 4.9E-24 185.2 10.4 117 33-153 160-278 (286)
56 2zay_A Response regulator rece 99.8 1.3E-18 4.5E-23 156.2 15.3 122 31-154 6-130 (147)
57 3cfy_A Putative LUXO repressor 99.8 1.3E-18 4.4E-23 156.0 15.2 118 34-153 5-123 (137)
58 1k66_A Phytochrome response re 99.8 2.7E-18 9.1E-23 153.3 16.8 123 32-154 5-140 (149)
59 1mvo_A PHOP response regulator 99.8 2.1E-18 7.2E-23 152.6 15.9 119 33-153 3-122 (136)
60 1ys7_A Transcriptional regulat 99.8 4.1E-18 1.4E-22 165.1 18.9 119 33-153 7-126 (233)
61 3kcn_A Adenylate cyclase homol 99.8 2.3E-18 7.8E-23 156.3 15.8 122 31-154 2-125 (151)
62 4dad_A Putative pilus assembly 99.8 8.5E-19 2.9E-23 157.6 12.8 124 30-153 17-142 (146)
63 1s8n_A Putative antiterminator 99.8 1.4E-18 4.6E-23 166.2 14.7 121 31-153 11-132 (205)
64 3cg0_A Response regulator rece 99.8 3.9E-18 1.3E-22 151.3 16.6 122 32-155 8-131 (140)
65 3eul_A Possible nitrate/nitrit 99.8 4E-18 1.4E-22 154.5 17.0 125 29-155 11-138 (152)
66 3snk_A Response regulator CHEY 99.8 1.8E-19 6E-24 160.3 7.4 120 31-152 12-133 (135)
67 3c3m_A Response regulator rece 99.8 3.1E-18 1.1E-22 153.1 15.5 119 33-153 3-124 (138)
68 2ayx_A Sensor kinase protein R 99.8 3.3E-18 1.1E-22 170.9 17.3 121 31-153 127-248 (254)
69 3n53_A Response regulator rece 99.8 9.5E-19 3.3E-23 156.2 11.9 120 33-155 3-125 (140)
70 2jba_A Phosphate regulon trans 99.8 5.5E-19 1.9E-23 154.2 9.6 119 33-153 2-123 (127)
71 3lte_A Response regulator; str 99.8 5.7E-18 1.9E-22 149.1 16.2 120 31-153 4-126 (132)
72 3klo_A Transcriptional regulat 99.8 1.3E-19 4.6E-24 176.2 6.2 168 31-200 5-186 (225)
73 2qxy_A Response regulator; reg 99.8 3.5E-18 1.2E-22 152.6 14.9 120 32-154 3-123 (142)
74 1p2f_A Response regulator; DRR 99.8 1.6E-17 5.5E-22 160.1 20.1 116 33-153 2-118 (220)
75 2rjn_A Response regulator rece 99.8 6.7E-18 2.3E-22 153.4 16.3 121 32-154 6-128 (154)
76 3c3w_A Two component transcrip 99.8 3.8E-19 1.3E-23 173.5 8.2 162 33-196 1-172 (225)
77 2qr3_A Two-component system re 99.8 7.6E-18 2.6E-22 149.4 15.8 119 33-153 3-127 (140)
78 3cg4_A Response regulator rece 99.8 1.9E-18 6.4E-23 154.1 11.5 122 32-155 6-130 (142)
79 3dzd_A Transcriptional regulat 99.8 2.1E-18 7.1E-23 182.9 13.8 118 35-154 2-120 (368)
80 3a10_A Response regulator; pho 99.8 3.6E-18 1.2E-22 147.0 12.6 113 34-150 2-115 (116)
81 3cu5_A Two component transcrip 99.8 2.3E-18 7.7E-23 155.1 11.6 119 33-153 2-124 (141)
82 1dcf_A ETR1 protein; beta-alph 99.8 6.7E-18 2.3E-22 150.0 14.3 118 32-152 6-129 (136)
83 3cz5_A Two-component response 99.8 1.4E-17 4.8E-22 151.1 15.6 121 32-154 4-127 (153)
84 3eq2_A Probable two-component 99.8 4.6E-18 1.6E-22 179.7 14.1 119 33-153 5-125 (394)
85 2jk1_A HUPR, hydrogenase trans 99.8 2.3E-17 7.7E-22 147.4 16.3 117 34-153 2-120 (139)
86 1qkk_A DCTD, C4-dicarboxylate 99.7 1.4E-17 4.7E-22 151.4 14.8 121 32-154 2-123 (155)
87 2qvg_A Two component response 99.7 2.2E-17 7.5E-22 147.3 15.5 120 32-151 6-134 (143)
88 2gkg_A Response regulator homo 99.7 2.4E-17 8.2E-22 142.9 13.9 115 34-151 6-124 (127)
89 3kyj_B CHEY6 protein, putative 99.7 1.1E-17 3.8E-22 150.4 11.8 116 30-146 10-129 (145)
90 2qsj_A DNA-binding response re 99.7 1.5E-17 5.1E-22 150.8 12.6 122 33-156 3-128 (154)
91 2hqr_A Putative transcriptiona 99.7 6.6E-17 2.3E-21 156.1 17.9 114 34-153 1-116 (223)
92 1ny5_A Transcriptional regulat 99.7 2.2E-17 7.6E-22 175.9 15.9 118 34-153 1-119 (387)
93 1w25_A Stalked-cell differenti 99.7 3E-17 1E-21 176.2 16.6 118 34-153 2-122 (459)
94 2qv0_A Protein MRKE; structura 99.7 7.5E-17 2.6E-21 144.1 16.4 120 32-155 8-130 (143)
95 2pln_A HP1043, response regula 99.7 7.4E-17 2.5E-21 143.4 15.8 119 29-153 14-134 (137)
96 3c97_A Signal transduction his 99.7 2.4E-17 8.1E-22 147.4 12.0 116 33-153 10-131 (140)
97 3t8y_A CHEB, chemotaxis respon 99.7 7.7E-17 2.6E-21 149.2 15.1 119 31-151 23-154 (164)
98 2rdm_A Response regulator rece 99.7 1.1E-16 3.9E-21 140.4 15.4 119 32-153 4-124 (132)
99 3eqz_A Response regulator; str 99.7 1.5E-17 5E-22 146.3 9.2 118 33-153 3-126 (135)
100 3bre_A Probable two-component 99.7 4.7E-17 1.6E-21 168.4 14.2 118 33-152 18-139 (358)
101 2j48_A Two-component sensor ki 99.7 4.9E-17 1.7E-21 138.4 11.0 113 33-150 1-116 (119)
102 3sy8_A ROCR; TIM barrel phosph 99.7 9E-17 3.1E-21 171.0 12.5 120 33-153 3-129 (400)
103 1qo0_D AMIR; binding protein, 99.7 5.6E-17 1.9E-21 153.8 9.6 115 32-153 11-126 (196)
104 2b4a_A BH3024; flavodoxin-like 99.7 5.2E-17 1.8E-21 144.5 8.7 120 27-152 9-131 (138)
105 1dc7_A NTRC, nitrogen regulati 99.7 2.6E-18 8.9E-23 148.7 -1.7 119 33-153 3-122 (124)
106 1irz_A ARR10-B; helix-turn-hel 99.6 4.4E-16 1.5E-20 125.4 7.3 62 217-278 2-63 (64)
107 1a2o_A CHEB methylesterase; ba 99.6 3.3E-15 1.1E-19 157.4 15.7 118 33-152 3-133 (349)
108 3luf_A Two-component system re 99.6 1.7E-15 5.7E-20 152.1 9.0 103 33-139 4-107 (259)
109 2vyc_A Biodegradative arginine 99.5 5.4E-15 1.8E-19 170.3 9.0 120 34-154 1-135 (755)
110 1w25_A Stalked-cell differenti 99.0 1.3E-08 4.5E-13 109.0 17.7 118 32-153 151-271 (459)
111 3cwo_X Beta/alpha-barrel prote 99.0 6.2E-10 2.1E-14 107.3 6.6 93 58-152 6-101 (237)
112 3tm8_A BD1817, uncharacterized 98.1 1.6E-06 5.4E-11 90.5 4.2 72 258-332 161-236 (328)
113 2ayx_A Sensor kinase protein R 97.2 0.00057 1.9E-08 67.6 7.8 98 30-151 8-105 (254)
114 3n75_A LDC, lysine decarboxyla 97.0 0.00076 2.6E-08 77.3 7.0 106 45-154 18-125 (715)
115 3hc1_A Uncharacterized HDOD do 96.5 0.00034 1.2E-08 71.8 -0.4 70 258-332 113-197 (305)
116 3q7r_A Transcriptional regulat 95.8 0.038 1.3E-06 48.2 8.7 102 34-152 13-118 (121)
117 3cwo_X Beta/alpha-barrel prote 95.7 0.059 2E-06 51.0 11.0 82 65-147 131-221 (237)
118 2ogi_A Hypothetical protein SA 95.6 0.0012 4.2E-08 63.5 -1.3 65 262-332 25-96 (196)
119 2o08_A BH1327 protein; putativ 95.4 0.0013 4.4E-08 62.8 -2.3 61 262-328 17-83 (188)
120 3ccg_A HD superfamily hydrolas 95.0 0.0022 7.7E-08 61.2 -1.8 61 262-328 18-85 (190)
121 2yxb_A Coenzyme B12-dependent 93.5 1.3 4.4E-05 41.1 13.6 119 32-153 17-146 (161)
122 3q58_A N-acetylmannosamine-6-p 90.1 2 6.8E-05 42.2 11.2 99 33-135 101-210 (229)
123 3i7a_A Putative metal-dependen 88.4 0.18 6.3E-06 50.7 2.3 95 233-332 79-193 (281)
124 3fkq_A NTRC-like two-domain pr 88.1 3.8 0.00013 42.5 12.3 105 32-151 20-127 (373)
125 3igs_A N-acetylmannosamine-6-p 87.8 4.3 0.00015 39.8 11.8 99 33-135 101-210 (232)
126 1wv2_A Thiazole moeity, thiazo 85.9 8.1 0.00028 39.0 12.6 114 33-151 105-237 (265)
127 2l69_A Rossmann 2X3 fold prote 80.6 14 0.00047 31.8 10.1 118 34-153 3-124 (134)
128 1ccw_A Protein (glutamate muta 79.6 15 0.0005 32.8 10.7 106 40-148 14-132 (137)
129 1r8j_A KAIA; circadian clock p 78.4 23 0.0008 35.8 12.5 123 28-153 4-130 (289)
130 2i2x_B MTAC, methyltransferase 77.1 28 0.00097 34.3 13.0 112 31-150 121-242 (258)
131 3ljx_A MMOQ response regulator 75.8 0.52 1.8E-05 47.7 -0.2 62 260-326 105-177 (288)
132 1vqr_A Hypothetical protein CJ 74.5 0.21 7.2E-06 50.6 -3.5 63 260-327 121-197 (297)
133 3m1t_A Putative phosphohydrola 73.7 0.88 3E-05 45.6 0.8 65 257-327 99-175 (275)
134 1xi3_A Thiamine phosphate pyro 73.2 22 0.00076 33.1 10.6 69 62-134 114-189 (215)
135 2htm_A Thiazole biosynthesis p 71.7 14 0.00047 37.4 9.0 107 40-151 108-228 (268)
136 3qja_A IGPS, indole-3-glycerol 70.6 51 0.0018 32.9 13.1 89 43-135 148-242 (272)
137 2ekc_A AQ_1548, tryptophan syn 69.7 13 0.00044 36.9 8.4 71 79-149 44-143 (262)
138 1y80_A Predicted cobalamin bin 69.2 17 0.00059 34.4 8.9 97 33-134 88-196 (210)
139 3o63_A Probable thiamine-phosp 69.0 37 0.0013 33.4 11.5 70 61-134 140-218 (243)
140 3ezx_A MMCP 1, monomethylamine 68.2 18 0.00061 34.9 8.8 98 32-134 91-202 (215)
141 2q5c_A NTRC family transcripti 67.5 34 0.0012 32.4 10.6 56 30-85 1-57 (196)
142 1yad_A Regulatory protein TENI 67.5 22 0.00075 33.7 9.3 70 61-134 115-191 (221)
143 1qop_A Tryptophan synthase alp 66.7 12 0.00041 37.2 7.4 71 79-149 44-143 (268)
144 1geq_A Tryptophan synthase alp 66.5 11 0.00039 36.3 7.1 54 94-147 68-127 (248)
145 4fo4_A Inosine 5'-monophosphat 65.9 56 0.0019 34.2 12.7 99 33-135 120-240 (366)
146 1xm3_A Thiazole biosynthesis p 64.7 22 0.00075 35.3 8.9 88 44-135 114-207 (264)
147 3f4w_A Putative hexulose 6 pho 64.3 85 0.0029 29.1 12.6 100 33-135 77-187 (211)
148 3vnd_A TSA, tryptophan synthas 62.7 13 0.00044 37.4 6.7 71 79-149 45-144 (267)
149 3ffs_A Inosine-5-monophosphate 62.1 52 0.0018 34.9 11.6 100 33-135 156-275 (400)
150 2xij_A Methylmalonyl-COA mutas 61.7 55 0.0019 37.7 12.4 118 32-153 603-732 (762)
151 1req_A Methylmalonyl-COA mutas 61.5 41 0.0014 38.5 11.3 118 32-152 595-723 (727)
152 2pq7_A Predicted HD superfamil 61.2 2.3 7.8E-05 41.0 0.9 39 262-306 32-70 (220)
153 3kp1_A D-ornithine aminomutase 61.0 34 0.0011 38.9 10.1 116 33-153 602-736 (763)
154 2hek_A Hypothetical protein; p 60.8 3 0.0001 44.0 1.8 39 265-308 52-90 (371)
155 4dzz_A Plasmid partitioning pr 60.6 16 0.00056 33.3 6.7 53 32-87 29-83 (206)
156 3b57_A LIN1889 protein; Q92AN1 59.3 3 0.0001 40.0 1.4 40 263-308 25-64 (209)
157 2pjq_A Uncharacterized protein 58.8 1.8 6.1E-05 42.4 -0.4 39 263-307 30-68 (231)
158 3dto_A BH2835 protein; all alp 58.7 3.2 0.00011 40.7 1.4 39 263-307 25-63 (223)
159 1xrs_B D-lysine 5,6-aminomutas 57.7 91 0.0031 31.2 11.9 115 32-151 119-257 (262)
160 2tps_A Protein (thiamin phosph 57.6 52 0.0018 30.9 9.8 69 62-134 122-199 (227)
161 2lci_A Protein OR36; structura 57.3 27 0.00094 29.9 6.8 39 37-75 81-119 (134)
162 3gw7_A Uncharacterized protein 56.6 3.8 0.00013 40.6 1.6 38 264-307 26-63 (239)
163 3khj_A Inosine-5-monophosphate 56.3 62 0.0021 33.7 10.9 100 33-135 117-236 (361)
164 2v5j_A 2,4-dihydroxyhept-2-ENE 56.1 1.1E+02 0.0039 30.6 12.6 98 49-148 30-132 (287)
165 2vws_A YFAU, 2-keto-3-deoxy su 55.8 1.3E+02 0.0044 29.7 12.7 98 49-148 9-111 (267)
166 2gek_A Phosphatidylinositol ma 55.8 51 0.0017 32.9 10.0 107 33-151 240-348 (406)
167 3qz6_A HPCH/HPAI aldolase; str 55.0 88 0.003 30.9 11.3 99 49-149 6-110 (261)
168 4adt_A Pyridoxine biosynthetic 54.8 93 0.0032 31.6 11.7 90 61-153 130-261 (297)
169 2gjl_A Hypothetical protein PA 54.8 1E+02 0.0035 31.1 12.1 79 53-134 114-200 (328)
170 3fro_A GLGA glycogen synthase; 51.7 1.3E+02 0.0043 30.1 12.2 107 32-151 284-394 (439)
171 3djb_A Hydrolase, HD family; a 51.5 3.8 0.00013 40.1 0.6 39 263-307 25-63 (223)
172 2bfw_A GLGA glycogen synthase; 50.2 1.4E+02 0.0047 26.5 11.5 106 33-151 70-179 (200)
173 1ka9_F Imidazole glycerol phos 50.1 1.2E+02 0.0043 28.8 11.4 78 67-146 155-242 (252)
174 3nav_A Tryptophan synthase alp 49.4 17 0.00057 36.7 5.0 55 94-148 84-145 (271)
175 3beo_A UDP-N-acetylglucosamine 48.7 1.7E+02 0.0057 28.7 12.4 59 80-151 283-341 (375)
176 2w6r_A Imidazole glycerol phos 48.5 86 0.0029 30.3 10.0 67 66-135 158-229 (266)
177 2paq_A 5'-deoxynucleotidase YF 47.8 6.1 0.00021 38.0 1.4 46 258-309 26-77 (201)
178 1rd5_A Tryptophan synthase alp 47.7 27 0.00094 34.1 6.2 69 79-148 45-138 (262)
179 3rht_A (gatase1)-like protein; 47.7 4.3 0.00015 40.7 0.3 77 33-115 4-88 (259)
180 3bw2_A 2-nitropropane dioxygen 47.0 1.5E+02 0.005 30.5 12.0 75 57-134 145-236 (369)
181 3bo9_A Putative nitroalkan dio 46.8 1.2E+02 0.0043 30.6 11.2 80 53-135 120-205 (326)
182 1ka9_F Imidazole glycerol phos 45.9 1E+02 0.0035 29.4 10.0 69 65-135 32-104 (252)
183 2v82_A 2-dehydro-3-deoxy-6-pho 45.6 1E+02 0.0036 28.6 9.8 91 52-149 96-196 (212)
184 1y0e_A Putative N-acetylmannos 45.0 1E+02 0.0036 28.8 9.7 86 47-135 108-204 (223)
185 3usb_A Inosine-5'-monophosphat 44.5 1.7E+02 0.0058 31.8 12.5 101 32-135 267-388 (511)
186 1dxe_A 2-dehydro-3-deoxy-galac 43.6 1.9E+02 0.0065 28.2 11.6 98 49-148 10-112 (256)
187 2z6i_A Trans-2-enoyl-ACP reduc 43.6 1.5E+02 0.005 30.1 11.2 76 56-134 109-190 (332)
188 1tqj_A Ribulose-phosphate 3-ep 43.4 45 0.0016 32.2 7.0 82 65-149 18-108 (230)
189 1thf_D HISF protein; thermophI 43.3 1.9E+02 0.0066 27.4 11.5 78 66-145 153-240 (253)
190 1ujp_A Tryptophan synthase alp 43.3 27 0.00093 35.0 5.4 84 65-149 28-140 (271)
191 1ep3_A Dihydroorotate dehydrog 43.2 71 0.0024 31.6 8.6 39 95-133 230-268 (311)
192 2w6r_A Imidazole glycerol phos 42.8 97 0.0033 29.9 9.3 70 65-136 31-104 (266)
193 3o07_A Pyridoxine biosynthesis 42.6 72 0.0025 32.5 8.3 62 94-155 186-254 (291)
194 2f9f_A First mannosyl transfer 42.4 1.7E+02 0.0057 25.9 10.3 107 33-152 50-162 (177)
195 2oo3_A Protein involved in cat 41.6 47 0.0016 33.7 6.9 69 33-101 113-182 (283)
196 1h5y_A HISF; histidine biosynt 41.2 1.2E+02 0.0043 28.3 9.7 69 64-134 33-105 (253)
197 1geq_A Tryptophan synthase alp 40.7 43 0.0015 32.1 6.3 83 49-135 125-220 (248)
198 2c6q_A GMP reductase 2; TIM ba 40.6 2.3E+02 0.0079 29.1 12.2 101 33-137 132-255 (351)
199 1h5y_A HISF; histidine biosynt 40.6 1.7E+02 0.0058 27.4 10.5 68 65-134 155-226 (253)
200 3fwz_A Inner membrane protein 40.3 1.1E+02 0.0037 26.5 8.4 94 32-134 29-124 (140)
201 2d00_A V-type ATP synthase sub 40.1 1.8E+02 0.0061 25.0 10.2 74 33-112 3-78 (109)
202 3c3y_A Pfomt, O-methyltransfer 39.6 1.2E+02 0.004 28.8 9.2 59 30-88 92-156 (237)
203 3duw_A OMT, O-methyltransferas 39.4 1.2E+02 0.0042 27.8 9.2 72 28-101 78-153 (223)
204 3paj_A Nicotinate-nucleotide p 39.0 2.3E+02 0.0078 29.2 11.6 91 35-133 204-301 (320)
205 1eep_A Inosine 5'-monophosphat 38.3 1.5E+02 0.0052 30.9 10.5 89 43-134 179-284 (404)
206 3l0g_A Nicotinate-nucleotide p 38.1 1.5E+02 0.0052 30.3 10.0 66 60-132 211-276 (300)
207 3gnn_A Nicotinate-nucleotide p 37.9 1.7E+02 0.006 29.7 10.5 65 61-132 214-278 (298)
208 4avf_A Inosine-5'-monophosphat 37.8 2.3E+02 0.008 30.5 12.2 99 33-135 241-361 (490)
209 1izc_A Macrophomate synthase i 37.7 2.3E+02 0.0077 29.2 11.5 83 64-148 50-138 (339)
210 3ovp_A Ribulose-phosphate 3-ep 37.5 88 0.003 30.3 8.0 56 79-135 134-197 (228)
211 3r2g_A Inosine 5'-monophosphat 37.5 3.7E+02 0.013 27.9 14.0 97 33-134 112-227 (361)
212 1jcn_A Inosine monophosphate d 37.3 2.6E+02 0.009 30.0 12.5 99 33-134 267-386 (514)
213 1vgv_A UDP-N-acetylglucosamine 37.1 1.8E+02 0.0062 28.7 10.6 42 105-151 300-341 (384)
214 3ceu_A Thiamine phosphate pyro 36.9 48 0.0017 31.3 5.9 69 61-134 93-171 (210)
215 1v4v_A UDP-N-acetylglucosamine 36.7 2.9E+02 0.0099 27.2 12.0 100 34-151 231-333 (376)
216 3cvo_A Methyltransferase-like 36.6 68 0.0023 30.7 6.9 112 33-149 51-199 (202)
217 1sui_A Caffeoyl-COA O-methyltr 35.1 3E+02 0.01 26.2 11.8 80 30-111 101-188 (247)
218 4had_A Probable oxidoreductase 34.7 2.8E+02 0.0097 27.5 11.6 111 29-152 19-136 (350)
219 3tdn_A FLR symmetric alpha-bet 34.2 1.2E+02 0.0042 29.0 8.4 68 65-134 36-107 (247)
220 1rzu_A Glycogen synthase 1; gl 34.2 1.7E+02 0.0059 30.1 10.2 108 33-151 320-439 (485)
221 3tsm_A IGPS, indole-3-glycerol 33.7 1.8E+02 0.0061 29.1 9.7 87 45-135 157-249 (272)
222 2iw1_A Lipopolysaccharide core 33.6 1.3E+02 0.0044 29.5 8.7 106 33-151 228-336 (374)
223 1vzw_A Phosphoribosyl isomeras 33.6 2E+02 0.0069 27.2 9.8 68 65-134 147-221 (244)
224 3dr5_A Putative O-methyltransf 33.5 57 0.002 30.9 5.8 68 30-101 78-149 (221)
225 3tqv_A Nicotinate-nucleotide p 33.5 2.5E+02 0.0084 28.5 10.7 65 60-132 202-267 (287)
226 3tr6_A O-methyltransferase; ce 33.4 1.3E+02 0.0046 27.5 8.3 72 28-101 84-160 (225)
227 3cbg_A O-methyltransferase; cy 32.8 1.4E+02 0.0048 28.1 8.5 71 29-101 93-168 (232)
228 2qgs_A Protein Se1688; alpha-h 32.6 17 0.00059 35.1 1.9 41 262-307 24-64 (225)
229 3f4w_A Putative hexulose 6 pho 32.5 44 0.0015 31.2 4.8 83 65-149 11-99 (211)
230 1thf_D HISF protein; thermophI 32.3 2.3E+02 0.0079 26.8 10.1 69 65-135 31-103 (253)
231 2y88_A Phosphoribosyl isomeras 31.7 3E+02 0.01 25.8 10.7 67 66-134 151-224 (244)
232 2fhp_A Methylase, putative; al 31.6 2.4E+02 0.0083 24.6 9.5 68 34-101 68-138 (187)
233 3okp_A GDP-mannose-dependent a 31.4 94 0.0032 30.7 7.3 106 34-151 230-343 (394)
234 3inp_A D-ribulose-phosphate 3- 31.1 63 0.0021 32.0 5.7 82 65-149 41-130 (246)
235 2avd_A Catechol-O-methyltransf 31.0 1.7E+02 0.0056 27.0 8.5 71 29-101 90-165 (229)
236 4e5v_A Putative THUA-like prot 30.8 61 0.0021 32.6 5.7 77 32-113 3-93 (281)
237 3ajx_A 3-hexulose-6-phosphate 30.7 38 0.0013 31.5 4.0 82 65-148 11-98 (207)
238 2xxa_A Signal recognition part 30.6 66 0.0023 34.3 6.2 53 33-87 129-191 (433)
239 1rd5_A Tryptophan synthase alp 30.3 1.2E+02 0.004 29.5 7.6 42 94-135 189-230 (262)
240 2hzd_A Transcriptional enhance 30.1 79 0.0027 26.3 5.2 56 221-276 5-76 (82)
241 2qzs_A Glycogen synthase; glyc 30.0 1.8E+02 0.006 30.0 9.4 108 33-151 321-440 (485)
242 1viz_A PCRB protein homolog; s 29.9 46 0.0016 32.8 4.5 59 67-134 23-83 (240)
243 3iot_A Maltose-binding protein 29.8 9.5 0.00033 40.0 -0.5 54 34-87 7-64 (449)
244 4fxs_A Inosine-5'-monophosphat 29.7 4E+02 0.014 28.6 12.4 99 33-135 243-363 (496)
245 1zh8_A Oxidoreductase; TM0312, 29.6 3.6E+02 0.012 26.9 11.4 109 30-151 15-131 (340)
246 2ixa_A Alpha-N-acetylgalactosa 29.4 1.7E+02 0.0058 30.7 9.2 114 32-151 19-140 (444)
247 3llv_A Exopolyphosphatase-rela 29.4 2.3E+02 0.0079 24.0 8.7 93 33-134 29-122 (141)
248 2l2q_A PTS system, cellobiose- 29.4 73 0.0025 27.0 5.2 78 31-114 2-84 (109)
249 2f6u_A GGGPS, (S)-3-O-geranylg 29.3 56 0.0019 32.1 5.0 58 67-134 23-83 (234)
250 1yxy_A Putative N-acetylmannos 29.3 2.2E+02 0.0074 26.8 9.2 84 47-135 122-215 (234)
251 1qpo_A Quinolinate acid phosph 29.2 2.6E+02 0.009 28.0 10.1 93 36-133 168-267 (284)
252 1qo2_A Molecule: N-((5-phospho 29.0 1.5E+02 0.005 28.2 8.0 78 65-145 145-239 (241)
253 3u81_A Catechol O-methyltransf 29.0 99 0.0034 28.7 6.6 61 30-90 80-145 (221)
254 1h1y_A D-ribulose-5-phosphate 28.9 37 0.0013 32.5 3.6 55 80-135 139-201 (228)
255 3c48_A Predicted glycosyltrans 28.7 1.9E+02 0.0066 29.0 9.3 108 33-151 276-390 (438)
256 3kts_A Glycerol uptake operon 28.6 67 0.0023 30.7 5.3 62 67-134 117-178 (192)
257 3bul_A Methionine synthase; tr 28.4 2.2E+02 0.0076 31.6 10.1 113 33-150 98-223 (579)
258 1qop_A Tryptophan synthase alp 28.4 2E+02 0.007 28.1 9.0 41 95-135 194-234 (268)
259 2px0_A Flagellar biosynthesis 28.3 71 0.0024 32.0 5.7 59 32-93 133-194 (296)
260 3tha_A Tryptophan synthase alp 28.2 36 0.0012 33.9 3.4 54 95-151 79-138 (252)
261 3mem_A Putative signal transdu 28.1 14 0.00048 39.7 0.5 45 262-309 277-322 (457)
262 2qfm_A Spermine synthase; sper 27.7 93 0.0032 32.6 6.6 56 34-89 212-277 (364)
263 3l4e_A Uncharacterized peptida 27.7 2.1E+02 0.0072 27.1 8.7 62 33-102 27-98 (206)
264 2pju_A Propionate catabolism o 27.3 3.9E+02 0.013 25.8 10.6 73 30-102 9-100 (225)
265 2p10_A MLL9387 protein; putati 27.2 5E+02 0.017 26.3 11.8 76 58-136 165-260 (286)
266 1tqx_A D-ribulose-5-phosphate 27.1 1.1E+02 0.0036 29.8 6.5 82 52-135 109-201 (227)
267 2q14_A Phosphohydrolase; BT420 26.7 15 0.00051 39.3 0.3 41 266-309 58-103 (410)
268 4e38_A Keto-hydroxyglutarate-a 26.5 2E+02 0.0067 28.1 8.4 80 58-141 37-119 (232)
269 3qhp_A Type 1 capsular polysac 26.3 2.6E+02 0.0089 23.8 8.5 107 32-151 31-139 (166)
270 3vk5_A MOEO5; TIM barrel, tran 26.2 1.2E+02 0.0042 30.8 6.9 56 80-136 200-257 (286)
271 3w01_A Heptaprenylglyceryl pho 26.2 54 0.0018 32.4 4.2 60 68-136 27-88 (235)
272 3axs_A Probable N(2),N(2)-dime 26.0 1.9E+02 0.0063 30.4 8.6 113 34-151 78-200 (392)
273 3lab_A Putative KDPG (2-keto-3 25.8 1.4E+02 0.0049 29.0 7.1 85 60-147 18-104 (217)
274 3s83_A Ggdef family protein; s 25.5 1.6E+02 0.0055 28.1 7.5 96 50-148 145-254 (259)
275 2cqz_A 177AA long hypothetical 25.5 22 0.00074 33.2 1.2 44 260-309 29-77 (177)
276 3tfw_A Putative O-methyltransf 25.5 2.5E+02 0.0084 26.7 8.9 71 28-101 83-156 (248)
277 3ot5_A UDP-N-acetylglucosamine 24.9 5.7E+02 0.02 26.1 12.3 43 104-151 318-360 (403)
278 2fli_A Ribulose-phosphate 3-ep 24.9 76 0.0026 29.6 4.9 55 79-134 131-197 (220)
279 2hnk_A SAM-dependent O-methylt 24.8 3E+02 0.01 25.6 9.2 69 31-101 83-167 (239)
280 3iwp_A Copper homeostasis prot 24.7 3E+02 0.01 27.8 9.5 84 62-148 45-150 (287)
281 1qdl_B Protein (anthranilate s 24.4 39 0.0013 31.4 2.8 50 34-85 1-51 (195)
282 3ip3_A Oxidoreductase, putativ 24.1 91 0.0031 31.3 5.7 35 118-152 81-117 (337)
283 2r60_A Glycosyl transferase, g 24.0 2.2E+02 0.0074 29.6 8.8 111 34-151 295-423 (499)
284 3rf0_A Exopolyphosphatase; str 23.9 22 0.00076 34.0 1.0 64 266-329 22-99 (209)
285 2xci_A KDO-transferase, 3-deox 23.7 1.5E+02 0.0052 30.1 7.3 52 95-151 293-345 (374)
286 1ws6_A Methyltransferase; stru 23.4 2.5E+02 0.0084 24.1 7.8 67 35-102 65-132 (171)
287 3l9w_A Glutathione-regulated p 23.1 1.5E+02 0.0052 31.1 7.3 94 32-135 26-122 (413)
288 3c6k_A Spermine synthase; sper 22.6 1.5E+02 0.0053 31.2 7.1 56 34-89 229-294 (381)
289 3jva_A Dipeptide epimerase; en 22.5 2.1E+02 0.0072 29.2 8.1 73 63-137 193-266 (354)
290 2dul_A N(2),N(2)-dimethylguano 22.2 2.4E+02 0.0082 29.2 8.6 76 34-115 72-165 (378)
291 3q2i_A Dehydrogenase; rossmann 22.2 5.6E+02 0.019 25.4 11.3 107 32-151 12-124 (354)
292 2al1_A Enolase 1, 2-phospho-D- 22.1 1.3E+02 0.0045 32.1 6.6 81 65-148 274-361 (436)
293 3p9n_A Possible methyltransfer 22.1 2.5E+02 0.0084 25.0 7.7 67 34-102 68-138 (189)
294 1rpx_A Protein (ribulose-phosp 21.7 60 0.0021 30.8 3.5 56 79-135 140-207 (230)
295 3u3x_A Oxidoreductase; structu 21.6 4E+02 0.014 26.9 10.0 105 33-150 26-136 (361)
296 2dqb_A Deoxyguanosinetriphosph 21.6 31 0.0011 36.4 1.6 38 266-309 78-115 (376)
297 3sz8_A 2-dehydro-3-deoxyphosph 21.5 2.9E+02 0.0099 27.9 8.6 72 65-139 149-246 (285)
298 2iuy_A Avigt4, glycosyltransfe 21.3 1.6E+02 0.0055 28.6 6.7 106 34-151 189-307 (342)
299 3ezy_A Dehydrogenase; structur 21.2 6.1E+02 0.021 25.1 11.3 46 106-151 64-113 (344)
300 1x1o_A Nicotinate-nucleotide p 21.2 5.1E+02 0.017 25.9 10.4 93 35-134 168-267 (286)
301 3jy6_A Transcriptional regulat 21.0 4.5E+02 0.015 24.5 9.7 66 44-116 24-95 (276)
302 3ovp_A Ribulose-phosphate 3-ep 21.0 72 0.0025 30.9 3.9 83 64-149 17-108 (228)
303 1ynb_A Hypothetical protein AF 20.7 47 0.0016 31.2 2.4 70 232-309 12-81 (173)
304 3tj4_A Mandelate racemase; eno 20.6 2.4E+02 0.0081 29.0 8.1 80 63-144 207-287 (372)
305 3ajd_A Putative methyltransfer 20.3 4.1E+02 0.014 25.6 9.4 55 33-87 108-164 (274)
306 1j8m_F SRP54, signal recogniti 20.3 35 0.0012 34.4 1.5 53 33-87 126-188 (297)
307 2jjm_A Glycosyl transferase, g 20.2 1.8E+02 0.006 29.0 6.9 65 80-151 285-349 (394)
308 2pyy_A Ionotropic glutamate re 20.2 2.4E+02 0.0081 24.9 7.2 49 32-87 111-159 (228)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=1e-24 Score=200.62 Aligned_cols=122 Identities=29% Similarity=0.552 Sum_probs=111.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---c
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---E 104 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~ 104 (596)
.+..++|||||||++.+++.++.+|+..||. |..|.+|.+|++.+++.. |||||+|++||+|||++++++||. .
T Consensus 8 ~m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 8 ILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp -CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCC
Confidence 3456799999999999999999999999986 678999999999998875 999999999999999999999984 3
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 105 ~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+++|||++|++.+.+...++++.||+|||.||++.++|..++++++++
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999988754
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=9.1e-21 Score=166.73 Aligned_cols=116 Identities=27% Similarity=0.432 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipVI 110 (596)
.+||||||++..+..++.+|+..+|+|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999997654 9999999999999999999999753 579999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
++|+..+.+...++++.||++|+.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 3
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=8e-21 Score=166.31 Aligned_cols=117 Identities=30% Similarity=0.491 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+||||||++..+..++.+|+..+|+|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+....+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998754 9999999999999999999999877789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+..+.....++++.||+||+.||++.++|..++++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988753
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.85 E-value=2.1e-20 Score=167.49 Aligned_cols=119 Identities=32% Similarity=0.542 Sum_probs=111.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ipV 109 (596)
+.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||++||++++++|+. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999999999999999999999999999999999999998764 999999999999999999999975 457999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|+..+.+...++++.||+||+.||++.++|..++++++++.
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998754
No 5
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=6.4e-23 Score=186.30 Aligned_cols=115 Identities=26% Similarity=0.401 Sum_probs=102.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
..++|||||||++.++..++.+|+..||+|. +|.++++|++.+++.+ ||+||+|++||+|||++++++||+ .++||
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipv 82 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPF 82 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCE
Confidence 3568999999999999999999999999985 7999999999998865 999999999999999999999985 57999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|++|++++.+. +.++|+++||.||++.++|..+++++++
T Consensus 83 I~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 83 IFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred EEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 99999987643 3468999999999999999998876543
No 6
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.85 E-value=1.3e-19 Score=179.26 Aligned_cols=120 Identities=33% Similarity=0.531 Sum_probs=113.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+++||||||++..+..++.+|+..+|+|..+.++.+|++.+.... ||+||+|+.||++||++++++|+. .+.+|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999998765 999999999999999999999975 4689999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|+..+.+...++++.||+||+.||++.++|..+++.++++.
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998864
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.84 E-value=2.8e-20 Score=166.01 Aligned_cols=120 Identities=23% Similarity=0.402 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y-~V~~a~sg~eALe~L~e~---~~~pDLVLlDI~MPdmdGleLl~~Ir~--~~~ 106 (596)
.++||||||++..+..++.+|+..+| .|..+.++.+|++.++.. ...||+||+|+.||++||++++++|+. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 46899999999999999999998887 588999999999998761 124999999999999999999999974 357
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+|||++|++.+.+...++++.||++|+.||++.++|..++++++..
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999887653
No 8
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.84 E-value=3.5e-20 Score=179.21 Aligned_cols=120 Identities=29% Similarity=0.477 Sum_probs=107.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhc-----------CCCceEEEEeCCCCCCCHHHHHH
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRER-----------KGCFDVVLSDVHMPDMDGFKLLE 99 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y-~V~~a~sg~eALe~L~e~-----------~~~pDLVLlDI~MPdmdGleLl~ 99 (596)
.+++||||||++..+..++.+|+..+| .|..+.++.+|++.+.+. ...|||||+|+.||++||+++++
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~ 139 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATR 139 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 468999999999999999999999998 899999999999999874 12499999999999999999999
Q ss_pred HHhc-----cCCCCEEEEcCCC-CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 100 HIGL-----EMDLPVIMMSADG-RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 100 ~Ir~-----~~~ipVIllTa~~-d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+. .+.+|||++|+.. +.+...++++.|+++||.||++ +|..+++++++++
T Consensus 140 ~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 140 EIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 9975 3789999999998 8888899999999999999998 8999998887654
No 9
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.83 E-value=8.5e-20 Score=161.43 Aligned_cols=119 Identities=29% Similarity=0.551 Sum_probs=108.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDL 107 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~i 107 (596)
.++|||||||++..++.++.+|+..+|. +..+.++.+|++.+.... .||+||+|+.||+++|++++++|+.. +.+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 3579999999999999999999999985 889999999999887653 59999999999999999999999752 579
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|||++|+..+.+...++++.||++|+.||++.++|..+++.+++
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998875
No 10
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.6e-19 Score=163.29 Aligned_cols=120 Identities=28% Similarity=0.450 Sum_probs=105.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-----cC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-----EM 105 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-----~~ 105 (596)
..+++||||||++..+..++.+|+..+|.+..+.++++|++.+.... ||+||+|+.||++||++++++|+. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 45689999999999999999999999999999999999999998754 999999999999999999999973 25
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
.+|||++|+..+.+...++++.||++|+.||++.++|..++.++...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887643
No 11
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.82 E-value=3e-19 Score=154.10 Aligned_cols=117 Identities=26% Similarity=0.470 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+||||||++..+..++..|+..+|.+..+.++.++++.+.... ||+||+|+.||+++|++++++++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 58999999999999999999998999999999999999998764 9999999999999999999999877889999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+..+.....++++.|+++|+.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988754
No 12
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.82 E-value=2.2e-19 Score=172.64 Aligned_cols=162 Identities=17% Similarity=0.286 Sum_probs=130.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~-~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
.+++||||||++..+..++.+|+.. +|.+ ..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 4579999999999999999999986 4887 68999999999998765 999999999999999999999974 56899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccc-------cCC-cccccccCCChhhHH
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-------SGS-LEETDHHKRGSDEIE 180 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~-------~~~-le~~~~~~ls~~Eie 180 (596)
||++|+..+.+...++++.||++|+.||++.++|..++++++++.......... ... ........++.+|.+
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 161 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 161 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHHH
Confidence 999999999999999999999999999999999999999998864332211000 000 001122457889999
Q ss_pred HHHHhhcCCcceeeh
Q 007601 181 YASSVNEGTEGTFKA 195 (596)
Q Consensus 181 ~l~~~~eg~~~~~~a 195 (596)
++..+.+|......+
T Consensus 162 vl~~l~~g~s~~~Ia 176 (215)
T 1a04_A 162 ILKLIAQGLPNKMIA 176 (215)
T ss_dssp HHHHHHTTCCHHHHH
T ss_pred HHHHHHcCCCHHHHH
Confidence 999988886543333
No 13
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.82 E-value=4.7e-19 Score=153.41 Aligned_cols=118 Identities=27% Similarity=0.407 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
++||||||++..+..++..|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998764 999999999999999999999974 468999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+..+.+...++++.|+++|+.||++.++|..++++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987653
No 14
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.82 E-value=4.7e-19 Score=153.93 Aligned_cols=118 Identities=20% Similarity=0.375 Sum_probs=110.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+||||||++..+..++.+|+..+|.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999998999999999999999998754 9999999999999999999999877789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.+...++++.||++|+.||++.++|...+++++++.
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987653
No 15
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.82 E-value=8.6e-19 Score=169.02 Aligned_cols=120 Identities=28% Similarity=0.530 Sum_probs=112.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998764 999999999999999999999975 47899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
+|+..+.+...++++.||++|+.||++.++|..++++++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999988653
No 16
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.82 E-value=4.5e-20 Score=174.40 Aligned_cols=120 Identities=20% Similarity=0.337 Sum_probs=111.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+... .||+||+|+.||++||++++++|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAE--KFEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTS--CCSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 357999999999999999999999999999999999999999765 4999999999999999999999974 5789999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|++.+.+...++++.||+||+.||++.++|..++++++++.
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998887654
No 17
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=2.9e-19 Score=159.97 Aligned_cols=120 Identities=21% Similarity=0.364 Sum_probs=111.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
..++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+....+|||+
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ 80 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVY 80 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEE
Confidence 3579999999999999999999998999999999999999998754 99999999999999999999998656899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988754
No 18
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.82 E-value=3.4e-19 Score=162.82 Aligned_cols=121 Identities=25% Similarity=0.386 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ip 108 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 357999999999999999999999999999999999999999765 49999999999999999999999754 6899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
||++|+..+.+...++++.||++|+.||++.++|..++++++++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654
No 19
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=3.9e-19 Score=157.78 Aligned_cols=120 Identities=25% Similarity=0.388 Sum_probs=111.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 468999999999999999999998999999999999999998754 999999999999999999999974 57899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
+|+..+.+...++++.||++|+.||++.++|..++++++++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999887543
No 20
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.82 E-value=4.7e-19 Score=161.16 Aligned_cols=123 Identities=28% Similarity=0.438 Sum_probs=114.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
...+.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSE
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCe
Confidence 455789999999999999999999999999999999999999998764 999999999999999999999974 57899
Q ss_pred EEEEcCCCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 109 VIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~G-A~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
||++|+..+.+...++++.| |++|+.||++.++|..++++++++..
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 99999999999999999999 99999999999999999999987653
No 21
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.82 E-value=5e-19 Score=155.25 Aligned_cols=118 Identities=25% Similarity=0.448 Sum_probs=109.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
+.+||||||++..+..++.+|+..+|.+..+.++.++++.+... .||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999899999999999999988765 4999999999999999999999974 46899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+|+..+.+...++++.||++|+.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988754
No 22
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.81 E-value=5.9e-19 Score=153.56 Aligned_cols=118 Identities=20% Similarity=0.413 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
.+||||||++..+..++.+|+..+|.+..+.++.++++.+.... ||+||+|+.||+++|++++++++..+.+|||++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999988999999999999999998754 9999999999999999999999866889999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.....++++.|+++|+.||++.++|...+++++++.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887653
No 23
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.81 E-value=2e-19 Score=179.02 Aligned_cols=154 Identities=26% Similarity=0.357 Sum_probs=129.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIll 112 (596)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 479999999999999999999999999999999999999998764 999999999999999999999988888999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccc------cCC-cccccccCCChhhHHHHHHh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN------SGS-LEETDHHKRGSDEIEYASSV 185 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~------~~~-le~~~~~~ls~~Eie~l~~~ 185 (596)
|+..+.+...++++.||+|||.||++.++|..+++.++++.......... ... ........++.+|.+++..+
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll 194 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 194 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765322111000 000 00111235788999998887
Q ss_pred hcC
Q 007601 186 NEG 188 (596)
Q Consensus 186 ~eg 188 (596)
.++
T Consensus 195 ~~g 197 (249)
T 3q9s_A 195 IRQ 197 (249)
T ss_dssp HHS
T ss_pred HHC
Confidence 766
No 24
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=7.4e-19 Score=157.19 Aligned_cols=123 Identities=26% Similarity=0.464 Sum_probs=113.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+....||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 47999999999999999999999999999999999999999853346999999999999999999999974 57899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
+|+..+.+...++++.||++|+.||++.++|..+++++++++..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986543
No 25
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.81 E-value=4.8e-19 Score=153.03 Aligned_cols=118 Identities=28% Similarity=0.380 Sum_probs=110.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEc
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllT 113 (596)
++||||||++..+..++.+|+..+|.+..+.++.+++..+.... ||+||+|+.||+++|++++++++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 68999999999999999999998999999999999999887764 9999999999999999999999877789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+..+.....++++.|+++|+.||++.++|..++++++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999987653
No 26
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.81 E-value=1.1e-19 Score=162.37 Aligned_cols=122 Identities=16% Similarity=0.279 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHh-cCCCceEEEEeCCCC-CCCHHHHHHHHhc---cC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMP-DMDGFKLLEHIGL---EM 105 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~-~~y~V~~a~sg~eALe~L~e-~~~~pDLVLlDI~MP-dmdGleLl~~Ir~---~~ 105 (596)
.+++||||||++..+..++.+|+. .+|+|..+.++.+|++.+.+ . .||+||+|+.|| +++|++++++|+. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~--~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLD--SITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCC--CCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCC--CCcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 467999999999999999999999 89999999999999999976 5 499999999999 9999999999975 57
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
.+|||++|+..+.+...++++.||++|+.||++.++|..++++++++...
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999876543
No 27
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.81 E-value=4.5e-19 Score=154.81 Aligned_cols=116 Identities=25% Similarity=0.466 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
.+||||||++..+..++.+|+..+|.+..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999998999999999999999998764 999999999999999999999975 578999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|+..+.+...++++.|+++|+.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988764
No 28
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.81 E-value=6.4e-20 Score=175.16 Aligned_cols=157 Identities=24% Similarity=0.377 Sum_probs=127.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+.+||||||++..+..++.+|+..+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 80 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPE--QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIV 80 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 346899999999999999999999999999999999999988654 4999999999999999999999974 5789999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccccCCcccccccCCChhhHHHHHHhhcCCc
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~~~~le~~~~~~ls~~Eie~l~~~~eg~~ 190 (596)
++|+..+.+...++++.||+||+.||++.++|..++++++++.............. ......++.+|.+++..+.+|..
T Consensus 81 ~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~Lt~rE~~vl~~l~~g~s 159 (208)
T 1yio_A 81 FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQL-EQLFSSLTGREQQVLQLTIRGLM 159 (208)
T ss_dssp EEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTSCHHHHHHHHHHTTTCC
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHcCCc
Confidence 99999998889999999999999999999999999999987543221110000000 11123577888888888877754
Q ss_pred c
Q 007601 191 G 191 (596)
Q Consensus 191 ~ 191 (596)
.
T Consensus 160 ~ 160 (208)
T 1yio_A 160 N 160 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.81 E-value=7.2e-19 Score=159.51 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=110.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc-----CCCceEEEEeCCCCCCCHHHHHHHHhc
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER-----KGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e~-----~~~pDLVLlDI~MPdmdGleLl~~Ir~ 103 (596)
...++||||||++..+..++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||+++|++++++|+.
T Consensus 6 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 6 NPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ 85 (149)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 3458999999999999999999998776 788999999999998752 125999999999999999999999975
Q ss_pred c---CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 104 ~---~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
. +.+|||++|+..+.+...++++.||++|+.||++.++|..+++++++..
T Consensus 86 ~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 86 NPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp CTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 4 5789999999999999999999999999999999999999999987654
No 30
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.81 E-value=6.2e-19 Score=152.77 Aligned_cols=116 Identities=28% Similarity=0.485 Sum_probs=107.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
+++||||||++..+..++.+|+..+|. +..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 468999999999999999999998999 568999999999998765 999999999999999999999974 5789999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
++|+..+.+...++++.|+++|+.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988764
No 31
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.81 E-value=5.4e-19 Score=160.21 Aligned_cols=124 Identities=22% Similarity=0.327 Sum_probs=112.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ 106 (596)
...++|||||||++..++.++.+|+..+ +.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.|+. .+.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 3457899999999999999999999876 78999999999999997654 999999999999999999999974 578
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
+|||++|+..+.+...++++.||++|+.||++.++|..++++++++...
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 9999999999999999999999999999999999999999999876543
No 32
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.81 E-value=4.6e-19 Score=155.46 Aligned_cols=120 Identities=27% Similarity=0.461 Sum_probs=110.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD 106 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y-~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ 106 (596)
..+++||||||++..+..++.+|+..+| .+..+.++.+|++.+... .||+||+|+.||+++|++++++|+.. +.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 4 AEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSCHHHHHHHHTTCTTSTT
T ss_pred cccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHhcCccccC
Confidence 3457999999999999999999998888 788999999999999865 49999999999999999999999753 67
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+|||++|+..+.+...++++.|+++|+.||++.++|..++++++++
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999988753
No 33
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.81 E-value=8.8e-19 Score=155.36 Aligned_cols=122 Identities=24% Similarity=0.315 Sum_probs=111.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP 108 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~--~~ip 108 (596)
+.+.+||||||++..+..++.+|+..+|.|..+.++.+++..+.... +||+||+|+.||+++|++++++|+.. +.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 45689999999999999999999999999999999999999998753 59999999999999999999999754 7899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
||++|+..+.+...++++.|+++|+.||++.++|..+++++..+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999988654
No 34
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=1e-18 Score=153.06 Aligned_cols=119 Identities=32% Similarity=0.543 Sum_probs=109.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y-~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~i 107 (596)
..++||||||++..+..++.+|+..+| .+..+.++.++++.+... .||+||+|+.||+++|++++++|+. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457899999999999999999999888 789999999999998764 4999999999999999999999975 3578
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|||++|+..+.+...++++.||++|+.||++.++|..++++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 35
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.80 E-value=3.1e-19 Score=159.06 Aligned_cols=123 Identities=24% Similarity=0.390 Sum_probs=112.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~i 107 (596)
..+.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDL 81 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTC
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCC
Confidence 34679999999999999999999999999999999999999998765 999999999999999999999974 5689
Q ss_pred CEEEEcCCCCHHHHH-HHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 108 PVIMMSADGRVSAVM-RGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 108 pVIllTa~~d~~~~~-eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
|||++|+..+.+... ++++.||++|+.||++.++|..++++++++...
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 82 AIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 999999988887777 889999999999999999999999999987644
No 36
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.80 E-value=1.1e-18 Score=158.22 Aligned_cols=122 Identities=23% Similarity=0.407 Sum_probs=110.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHh-------cCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-------RKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e-------~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
.+++||||||++..+..++.+|+..++ .|..+.++.+|++.++. ....||+||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 468999999999999999999999988 89999999999999961 123699999999999999999999997
Q ss_pred c---cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 103 L---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 103 ~---~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
. .+.+|||++|+..+.+...++++.|+++|+.||++.++|..+++++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5 46899999999999999999999999999999999999999999987654
No 37
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.80 E-value=7.7e-19 Score=156.06 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=108.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
+++||||||++..+..++.+|+..+ +.+..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcE
Confidence 3689999999999999999999865 56788999999999998765 999999999999999999999974 578999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 81 IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999987654
No 38
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.80 E-value=1.9e-19 Score=161.46 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdGleLl~~Ir~~~~ipVI 110 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.|+..+.+|||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 357999999999999999999999999999999999999999763 25999999999995 9999999999877899999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
++|+..+.+...++++.||++|+.||++.++|..++++++++++.
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 999999988888999999999999999999999999999986543
No 39
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.80 E-value=2.4e-19 Score=159.97 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=111.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhc-cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir~-~~~ip 108 (596)
...+||||||++..+..++.+|+..+|.|..+.++.+|++.+++. .||+||+|+.||+ ++|++++++|+. .+.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 457999999999999999999999999999999999999988764 4999999999999 999999999974 57899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
||++|+..+.+...++++.||++|+.||++.++|..++++++.+..
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999987654
No 40
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.80 E-value=7.1e-19 Score=156.17 Aligned_cols=122 Identities=21% Similarity=0.366 Sum_probs=113.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+++||||||++..+..++.+|+..++.+..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4689999999999999999999998999999999999999998865 999999999999999999999974 5689999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
++|+..+.+...++++.||++|+.||++.++|..++++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999986543
No 41
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.80 E-value=8.3e-19 Score=157.34 Aligned_cols=122 Identities=16% Similarity=0.286 Sum_probs=112.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~--V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ 106 (596)
.+++||||||++..+..++.+|+..++. |..+.++.+|++.+... .||+||+|+.||+++|++++++|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 4579999999999999999999998887 88999999999999765 4999999999999999999999975 468
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHhhcc
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRWN 155 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl-~~eeL~~~l~~vlrk~~~ 155 (596)
+|||++|+..+.+...++++.||++|+.||+ +.++|..+++++++++..
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999987643
No 42
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.80 E-value=2e-18 Score=167.34 Aligned_cols=119 Identities=28% Similarity=0.422 Sum_probs=112.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIll 112 (596)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+..+.+|||++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 369999999999999999999999999999999999999998765 999999999999999999999987788999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred eCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998764
No 43
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=6.4e-19 Score=155.06 Aligned_cols=120 Identities=26% Similarity=0.444 Sum_probs=103.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+.+||||||++..+..++.+|+..+|.+..+.++.+|++.++.. .||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 467999999999999999999999999999999999999999765 4999999999999999999999974 5689999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl-~~eeL~~~l~~vlrk~ 153 (596)
++|+..+.+...++++.|+++|+.||+ +.++|..++++++++.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999988654
No 44
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1.2e-18 Score=155.30 Aligned_cols=123 Identities=18% Similarity=0.279 Sum_probs=111.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC---CCceEEEEeCCCCCCCHHHHHHHHhc--
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK---GCFDVVLSDVHMPDMDGFKLLEHIGL-- 103 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e~~---~~pDLVLlDI~MPdmdGleLl~~Ir~-- 103 (596)
..+++||||||++..+..++.+|+..++ .|..+.++.+|++.+++.. ..||+||+|+.||+++|+++++.|+.
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 86 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHF 86 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999999988 8999999999999998710 24999999999999999999999975
Q ss_pred ---cCCCCEEEEcCCCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 104 ---EMDLPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 104 ---~~~ipVIllTa~~d~~~~~eAl~~G-A~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
.+.+|||++|+..+.+...+++..| +++||.||++.++|..+++++....
T Consensus 87 ~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 87 QPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999 9999999999999999999887643
No 45
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.80 E-value=6.8e-19 Score=153.06 Aligned_cols=117 Identities=22% Similarity=0.389 Sum_probs=102.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ipVI 110 (596)
.+||||||++..+..++.+|+..+|.+..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999999999999999999999998764 999999999999999999999975 3578999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
++|+..+.+...++++.|+++|+.||++.++|..++++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999888889999999999999999999999999887653
No 46
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.80 E-value=8e-19 Score=160.86 Aligned_cols=121 Identities=26% Similarity=0.371 Sum_probs=111.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
..+++||||||++..++.++.+|+..+|.+. .+.++.+|++.+.+....|||||+|+.||+++|++++++|+. .+.+|
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCc
Confidence 3468999999999999999999999999988 999999999999876213899999999999999999999974 57899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
||++|+..+.+...++++.|+++||.||++.++|..+++++++
T Consensus 114 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 114 VIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988753
No 47
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.5e-18 Score=152.98 Aligned_cols=122 Identities=19% Similarity=0.311 Sum_probs=111.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC-----CCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK-----GCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e~~-----~~pDLVLlDI~MPdmdGleLl~~Ir~~- 104 (596)
+++||||||++..+..++.+|+..++ .|..+.++.+|++.+.+.. ..||+||+|+.||+++|++++++|+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999888 8999999999999997620 359999999999999999999999754
Q ss_pred --CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 105 --~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
+.+|||++|+..+.+...++++.|+++|+.||++.++|..+++++++...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999987653
No 48
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.80 E-value=8.9e-19 Score=154.45 Aligned_cols=120 Identities=25% Similarity=0.327 Sum_probs=104.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ip 108 (596)
.+++||||||++..+..++.+|+ .+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 46799999999999999999999 7899999999999999998764 999999999999999999999975 35899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
||++|+..+.+. .++++.|+++|+.||++.++|..++++++++...
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 999999988877 8899999999999999999999999999987643
No 49
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.80 E-value=4.5e-19 Score=156.54 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVI 110 (596)
.+|||||||++..++.++.+|+..+|.+. .+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+ ..+.+|||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 37999999999999999999999999987 8999999999998765 99999999999999999999997 45689999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
++|+..+.+...++++.|+++|+.||++.++|..+++++++++..
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 999999988999999999999999999999999999999876644
No 50
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.79 E-value=2.2e-18 Score=153.11 Aligned_cols=122 Identities=26% Similarity=0.341 Sum_probs=111.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRR-CLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EM 105 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~-~~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~ 105 (596)
..+++||||||++..+..++.+|+. .+|. +..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATA 83 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTT
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCcccc
Confidence 4568999999999999999999998 8999 899999999999998764 999999999999999999999975 46
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
.+|||++|+..+.....++++.|+++|+.||++.++|..++++++++..
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999999999987654
No 51
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.79 E-value=1e-18 Score=154.12 Aligned_cols=119 Identities=28% Similarity=0.469 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~--~~~ip 108 (596)
+++||||||++..+..++.+|+.. +|.+. .+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCc
Confidence 368999999999999999999987 78865 8999999999998765 999999999999999999999975 36789
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
||++|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999987653
No 52
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.79 E-value=2e-18 Score=169.30 Aligned_cols=119 Identities=29% Similarity=0.511 Sum_probs=111.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIll 112 (596)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+..+.+|||++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 369999999999999999999999999999999999999998765 999999999999999999999987678999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+..+.+...++++.||+||+.||++.++|..++++++++.
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999888999999999999999999999999999887654
No 53
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.79 E-value=5.2e-19 Score=155.06 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=106.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ipV 109 (596)
+++||||||++..++.++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999975 578999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|+..+.+. .+++..|+++|+.||++.++|...+++..+..
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999998887 88999999999999999999999999876543
No 54
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.79 E-value=1.1e-18 Score=175.28 Aligned_cols=122 Identities=30% Similarity=0.402 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ip 108 (596)
..++||||||++..+..+...|+..+|.|..+.++.+|++.+++.. +||+||+|+.||++||++++++||.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 4689999999999999999999999999999999999999998753 48999999999999999999999753 3689
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
||++|+..+.+...++++.||+|||.||++.++|...++++++...
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999987653
No 55
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.79 E-value=1.4e-19 Score=185.23 Aligned_cols=117 Identities=23% Similarity=0.339 Sum_probs=108.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP-dmdGleLl~~Ir~~~~ipVI 110 (596)
+.+||||||++.++..++.+|+..||.|. .+.++.+|++.+.+.. |||||+|++|| +|||+++++.||..+.+|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 45899999999999999999999999999 9999999999998765 99999999999 79999999999866699999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|++++ ...++++.|++|||.||++.++|..+++++++..
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 9999864 4677889999999999999999999999998764
No 56
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.79 E-value=1.3e-18 Score=156.25 Aligned_cols=122 Identities=18% Similarity=0.370 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~i 107 (596)
..+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 45689999999999999999999999999999999999999998865 999999999999999999999975 5689
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
|||++|+..+.+...++++.|+++|+.||++.++|..++++++++.+
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987653
No 57
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.3e-18 Score=155.95 Aligned_cols=118 Identities=26% Similarity=0.453 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999999999999999999988999999999999999998765 999999999999999999999974 468999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 58
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.79 E-value=2.7e-18 Score=153.32 Aligned_cols=123 Identities=23% Similarity=0.373 Sum_probs=112.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC--------CCceEEEEeCCCCCCCHHHHHHHH
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK--------GCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e~~--------~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
.+++||||||++..+..++.+|+..++ .|..+.++.+|++.+.... ..||+||+|+.||+++|++++++|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 467899999999999999999999888 8999999999999998611 259999999999999999999999
Q ss_pred hcc---CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 102 GLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 102 r~~---~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
+.. +.+|||++|+..+.+...++++.|+++|+.||++.++|..+++++++.+.
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 854 67999999999999999999999999999999999999999999987653
No 59
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.79 E-value=2.1e-18 Score=152.59 Aligned_cols=119 Identities=28% Similarity=0.499 Sum_probs=110.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
+.+||||||++..+..++..|+..+|.+..+.++.++++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 468999999999999999999998999999999999999998765 999999999999999999999975 46899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+.....++++.|+++|+.||++.++|..++++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999998888889999999999999999999999999988754
No 60
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.78 E-value=4.1e-18 Score=165.15 Aligned_cols=119 Identities=36% Similarity=0.528 Sum_probs=111.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998764 999999999999999999999975 47899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+.+...++++.||+||+.||++.++|..++++++++.
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999888899999999999999999999999999998765
No 61
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.78 E-value=2.3e-18 Score=156.26 Aligned_cols=122 Identities=25% Similarity=0.458 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
..+++||||||++..++.++.+|+. +|.|..+.++.+|++.+.+.. +||+||+|+.||+++|++++++|+. .+.+||
T Consensus 2 ~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 79 (151)
T 3kcn_A 2 SLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVY 79 (151)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEE
Confidence 3467999999999999999999986 899999999999999998753 3699999999999999999999974 678999
Q ss_pred EEEcCCCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 110 IMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~G-A~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
|++|+..+.+...++++.| +++|+.||++.++|..++++++++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 80 LMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999987654
No 62
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.78 E-value=8.5e-19 Score=157.62 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=112.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~-y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~i 107 (596)
...+.+||||||++..+..++.+|+..+ |.|..+.++.+++..+.+....||+||+|+.||+++|++++++|+. .+.+
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 3457899999999999999999999988 9999999999888877642014999999999999999999999974 5789
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998764
No 63
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.78 E-value=1.4e-18 Score=166.16 Aligned_cols=121 Identities=26% Similarity=0.370 Sum_probs=112.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
+...+||||||++..+..++.+|+..+|.+. .+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.....||
T Consensus 11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~pi 88 (205)
T 1s8n_A 11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAPI 88 (205)
T ss_dssp CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSCE
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCE
Confidence 4457999999999999999999999999988 8999999999998765 999999999999999999999986555699
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|++.+.+...++++.||+||+.||++.++|..++++++++.
T Consensus 89 i~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 89 VVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
No 64
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.78 E-value=3.9e-18 Score=151.32 Aligned_cols=122 Identities=21% Similarity=0.322 Sum_probs=113.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCCE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP-dmdGleLl~~Ir~~~~ipV 109 (596)
.+++||||||++..+..++.+|+..+|.+. .+.++.+|++.+.+.. ||+||+|+.|| +++|+++++.|+..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 468999999999999999999999899999 5999999999998765 99999999998 8999999999975588999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
|++|+..+.+...++++.|+++|+.||++.++|..++++++++...
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999876543
No 65
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.78 E-value=4e-18 Score=154.50 Aligned_cols=125 Identities=25% Similarity=0.322 Sum_probs=111.3
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM 105 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y~--V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~ 105 (596)
..+.+.|||||||++..++.++.+|+..++. +..+.++.+|++.+++.. ||+||+|+.||+++|+++++.|+. .+
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 3456789999999999999999999988743 558999999999998865 999999999999999999999974 57
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
.+|||++|+..+.+...++++.||++|+.||++.++|..++++++++...
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 89999999999999999999999999999999999999999999886543
No 66
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=1.8e-19 Score=160.34 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=109.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~-y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
..+.+||||||++..+..++.+|+..+ |.|..+.++.+|++.+... .||+||+|+.||+++|++++++|+. .+.+|
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 89 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADT--RPGIVILDLGGGDLLGKPGIVEARALWATVP 89 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTC--CCSEEEEEEETTGGGGSTTHHHHHGGGTTCC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhcc--CCCEEEEeCCCCCchHHHHHHHHHhhCCCCc
Confidence 456799999999999999999999999 9999999999999988654 4999999999999999999999974 45899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
||++|+..+.+...++++.||++|+.||++.++|..++++++++
T Consensus 90 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 90 LIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887653
No 67
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.78 E-value=3.1e-18 Score=153.09 Aligned_cols=119 Identities=30% Similarity=0.437 Sum_probs=106.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipV 109 (596)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 368999999999999999999999999999999999999998764 9999999999999999999999753 47899
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|+..+......++..|+++|+.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 99999887666666667788999999999999999999887643
No 68
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=3.3e-18 Score=170.94 Aligned_cols=121 Identities=31% Similarity=0.475 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
..+++||||||++..+..++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+.||++||++++++||. .+.+||
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcE
Confidence 34689999999999999999999999999999999999999998764 999999999999999999999974 468999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|+..+.+...++++.|+++|+.||++.++|..++++++++.
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988754
No 69
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.78 E-value=9.5e-19 Score=156.21 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=102.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipV 109 (596)
+.+||||||++..+..++.+|+.. |.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 478999999999999999999987 99999999999999998875 9999999999999999999999754 68999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
|++|+..+.+...++++.||++|+.||++.++|..++++++++...
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999988889999999999999999999999999999987644
No 70
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.77 E-value=5.5e-19 Score=154.24 Aligned_cols=119 Identities=27% Similarity=0.441 Sum_probs=109.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipV 109 (596)
.++||||||++..+..++.+|+..+|.+..+.++.++++.+... .||+||+|+.||+++|++++++++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 36899999999999999999999899999999999999988654 49999999999999999999999754 68999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|+..+.+...++++.|+++|+.||++.++|...+++++++.
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999988999999999999999999999999999987653
No 71
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.77 E-value=5.7e-18 Score=149.08 Aligned_cols=120 Identities=23% Similarity=0.368 Sum_probs=103.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC---CC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DL 107 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~---~i 107 (596)
..+.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+... ..
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQP 81 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCC
Confidence 34679999999999999999999999999999999999999998764 99999999999999999999997543 45
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+||+++..... ...++++.||++|+.||++.++|..+++++....
T Consensus 82 ~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 82 KILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 56666665555 7889999999999999999999999999887654
No 72
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.77 E-value=1.3e-19 Score=176.18 Aligned_cols=168 Identities=9% Similarity=0.007 Sum_probs=128.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRR-CLYNVTT-CSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EM 105 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~-~~y~V~~-a~sg~eALe-~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~--~~ 105 (596)
+.+++||||||++..+..++.+|+. .+|.+.. +.++.+++. .+... .||+||+|+.||++||++++++|+. .+
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~ 82 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESR--SIQMLVIDYSRISDDVLTDYSSFKHISCP 82 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGG--GCCEEEEEGGGCCHHHHHHHHHHHHHHCT
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhcc--CCCEEEEeCCCCCCCHHHHHHHHHHhhCC
Confidence 3568999999999999999999994 5888754 456666655 35544 4999999999999999999999976 68
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccccccccc---------cCCcccccccCCCh
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN---------SGSLEETDHHKRGS 176 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~---------~~~le~~~~~~ls~ 176 (596)
.+|||++|+..+.+....+++.||+||+.||++.++|..++++++++.......... ...........++.
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 162 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTK 162 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCH
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCH
Confidence 899999999999888999999999999999999999999999999865432221100 00001112345888
Q ss_pred hhHHHHHHhhcCCcceeehhhhcc
Q 007601 177 DEIEYASSVNEGTEGTFKAQRKRI 200 (596)
Q Consensus 177 ~Eie~l~~~~eg~~~~~~a~~~~i 200 (596)
+|.+++..+.+|......+....+
T Consensus 163 rE~~vL~~l~~g~s~~~Ia~~l~~ 186 (225)
T 3klo_A 163 REQQIIKLLGSGASNIEIADKLFV 186 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCC
Confidence 999999999888655444443333
No 73
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.77 E-value=3.5e-18 Score=152.63 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+++. .||+||+|+ ||+++|+++++.|+. .+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 467999999999999999999999999999999999999999875 499999999 999999999999974 5689999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
++|+..+.+...++++.|+++|+.||++.++|..++++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999987653
No 74
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.77 E-value=1.6e-17 Score=160.15 Aligned_cols=116 Identities=27% Similarity=0.372 Sum_probs=108.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ipVIl 111 (596)
+++||||||++..+..++.+|+..+ .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 76 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETRPETWVIL 76 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 4699999999999999999999888 899999999999876 2 59999999999999999999999754 7899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999998764
No 75
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.77 E-value=6.7e-18 Score=153.37 Aligned_cols=121 Identities=24% Similarity=0.448 Sum_probs=112.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 4679999999999999999999999999999999999999998654 999999999999999999999974 5789999
Q ss_pred EEcCCCCHHHHHHHHHcC-CCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~G-A~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
++|+..+.+...++++.| +++|+.||++.++|..++++++++..
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999999987654
No 76
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.77 E-value=3.8e-19 Score=173.47 Aligned_cols=162 Identities=22% Similarity=0.256 Sum_probs=131.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~-y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
+++||||||++..+..++.+|+..+ |.+ ..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 78 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRC 78 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 3799999999999999999999876 884 57999999999998765 999999999999999999999974 578999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcccccccccc--CCc-----ccccccCCChhhHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS--GSL-----EETDHHKRGSDEIEYA 182 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~~~~~~~~--~~l-----e~~~~~~ls~~Eie~l 182 (596)
|++|+..+.+...++++.||++|+.||++.++|..+++.++++........... ... .......++.+|.+++
T Consensus 79 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 158 (225)
T 3c3w_A 79 LILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLL 158 (225)
T ss_dssp EEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999998654322110000 000 0012245888999999
Q ss_pred HHhhcCCcceeehh
Q 007601 183 SSVNEGTEGTFKAQ 196 (596)
Q Consensus 183 ~~~~eg~~~~~~a~ 196 (596)
..+.+|.+....+.
T Consensus 159 ~~l~~g~s~~eIa~ 172 (225)
T 3c3w_A 159 GLLSEGLTNKQIAD 172 (225)
T ss_dssp HHHHTTCCHHHHHH
T ss_pred HHHHCCCCHHHHHH
Confidence 99888855443333
No 77
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.77 E-value=7.6e-18 Score=149.43 Aligned_cols=119 Identities=27% Similarity=0.442 Sum_probs=110.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhc-cCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGL-EMD 106 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MP-----dmdGleLl~~Ir~-~~~ 106 (596)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.+.. ||+||+|+.|| +++|+++++.|+. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 479999999999999999999999999999999999999998764 99999999999 9999999999974 578
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|||++|+..+.+...++++.|+++|+.||++.++|..++++++++.
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998754
No 78
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.76 E-value=1.9e-18 Score=154.07 Aligned_cols=122 Identities=25% Similarity=0.398 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ip 108 (596)
.+++||||||++..++.++.+|+..+|+|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 5689999999999999999999999999999999999999998754 999999999999999999999975 46789
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
||++|+..+.+...++++.|+++|+.||++.++|..++++++++.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999998888888999999999999999999999999999876543
No 79
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.76 E-value=2.1e-18 Score=182.92 Aligned_cols=118 Identities=31% Similarity=0.441 Sum_probs=111.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEc
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllT 113 (596)
+|||||||+.++..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||+|||++++++|+. .+.+|||++|
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT 79 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVIT 79 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEe
Confidence 7999999999999999999999999999999999999998765 999999999999999999999974 5789999999
Q ss_pred CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 114 a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
++.+.+.+.++++.||+||+.||++.++|..+++++++...
T Consensus 80 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 80 GHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp CSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987653
No 80
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.76 E-value=3.6e-18 Score=147.03 Aligned_cols=113 Identities=25% Similarity=0.406 Sum_probs=103.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
.+||||||++..+..++..|+..+|.+..+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 58999999999999999999999999999999999999998754 999999999999999999999974 468999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
|+..+.. .++++.|+++|+.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9987665 67889999999999999999999888764
No 81
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.76 E-value=2.3e-18 Score=155.10 Aligned_cols=119 Identities=27% Similarity=0.369 Sum_probs=101.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRR--CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~--~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
+++||||||++..++.++..|.. .+|.+. .+.++.++++.+... .||+||+|+.||+++|++++++|+. .+.+|
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ 79 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLYPDCS 79 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Confidence 36899999999999999999974 577776 999999999998765 4999999999999999999999974 57899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
||++|+..+.+...++++.||++|+.||++.++|..+++++++..
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 80 VIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999998888889999999999999999999999999988754
No 82
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.76 E-value=6.7e-18 Score=149.96 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=105.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC----C
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM----D 106 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~----~ 106 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+... +|+||+|+.||+++|++++++|+. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999999899999999999999988542 499999999999999999999973 22 3
Q ss_pred C-CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 107 L-PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 107 i-pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
. +||++|+..+.+...++++.||++|+.||++.++|..++++++++
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 3 578899999999999999999999999999999999999988754
No 83
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.75 E-value=1.4e-17 Score=151.06 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=111.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~-~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
.+++||||||++..+..++.+|+. .+|.+. .+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCe
Confidence 357999999999999999999998 689988 8999999999998764 999999999999999999999974 57899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
||++|+..+.+...++++.||++|+.||++.++|..++++++++..
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999887553
No 84
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.75 E-value=4.6e-18 Score=179.69 Aligned_cols=119 Identities=28% Similarity=0.510 Sum_probs=108.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
+++||||||++..+..++.+|+..+|+|..+.++.+|++.+++.. |||||+|++||++||++++++|+. .+.+|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 579999999999999999999999999999999999999998764 999999999999999999999974 57899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl-~~eeL~~~l~~vlrk~ 153 (596)
+|++.+.+...++++.||+|||.||+ +.++|..++++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6899999999887654
No 85
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.75 E-value=2.3e-17 Score=147.35 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=106.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
.+||||||++..+..++.+|+.. |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 37999999999999999999875 99999999999999998754 999999999999999999999974 468899999
Q ss_pred cCCCCHHHHHHHHHc-CCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~-GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|+..+.....+++.. ||+||+.||++.++|..+++++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999988888899876 59999999999999999999988654
No 86
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.75 E-value=1.4e-17 Score=151.44 Aligned_cols=121 Identities=30% Similarity=0.504 Sum_probs=110.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVI 110 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 357999999999999999999999999999999999999988764 4999999999999999999999974 5789999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhc
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~ 154 (596)
++|+..+.+...++++.|+++|+.||++.++|..++++++++++
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987653
No 87
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.75 E-value=2.2e-17 Score=147.26 Aligned_cols=120 Identities=20% Similarity=0.311 Sum_probs=107.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc----CCCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER----KGCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e~----~~~pDLVLlDI~MPdmdGleLl~~Ir~~- 104 (596)
.+++||||||++..+..++.+|+..++ .|..+.++.+|++.+++. ...||+||+|+.||+++|+++++.|+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 457899999999999999999998887 899999999999999861 1259999999999999999999999754
Q ss_pred --CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 105 --~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
+.+|||++|+..+.+...++++.|+++|+.||++.++|..++.....
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988776544
No 88
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.74 E-value=2.4e-17 Score=142.85 Aligned_cols=115 Identities=17% Similarity=0.325 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhc---cCCCCE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGL---EMDLPV 109 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MP-dmdGleLl~~Ir~---~~~ipV 109 (596)
++||||||++..+..++..|+..+|.+..+.++.+|++.++... ||+||+|+.|| +++|++++++++. .+.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 58999999999999999999999999999999999999998765 99999999999 9999999999975 378999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|++ +..+.+...++++.|+++|+.||++.++|...++++++
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 999 88888888999999999999999999999999998764
No 89
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.73 E-value=1.1e-17 Score=150.39 Aligned_cols=116 Identities=23% Similarity=0.310 Sum_probs=96.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~-~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i 107 (596)
.+.+.+||||||++..+..++.+|+.. +|.+. .+.++.+|++.+.+.. .||+||+|+.||+++|++++++|+.....
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 355678999999999999999999987 88864 8999999999998762 49999999999999999999999866668
Q ss_pred CEEEEcC--CCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHH
Q 007601 108 PVIMMSA--DGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (596)
Q Consensus 108 pVIllTa--~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l 146 (596)
|+|++|+ ..+.+...++++.||++|+.||++.++|...+
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 9999987 66667788999999999999999966655443
No 90
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.73 E-value=1.5e-17 Score=150.79 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=100.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y-~V~~a~sg~eALe~L~e-~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
+++||||||++..+..++.+|+.. ++ .|..+.++.+|++.+.. . .||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADN--TVDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTC--CCSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccC--CCCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999987 77 68899999999999987 4 4999999999999999999999974 57899
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhccc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE 156 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~~ 156 (596)
||++|+..+.+...++++.|+++|+.||++.++|..++++++++....
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 999999999899999999999999999999999999999998765443
No 91
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.73 E-value=6.6e-17 Score=156.12 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=106.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~-~ipVIll 112 (596)
++||||||++..+..++.+|+..+|.|..+.++.+|++.+... .||+|| ||+++|+++++.|+..+ .+|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 5799999999999999999999899999999999999999765 499999 99999999999997556 8999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl-~~eeL~~~l~~vlrk~ 153 (596)
|+..+.+...++++.||++|+.||+ +.++|..++++++++.
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999 9999999999988654
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.73 E-value=2.2e-17 Score=175.92 Aligned_cols=118 Identities=29% Similarity=0.515 Sum_probs=110.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIll 112 (596)
++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+. .+.+|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999988999999999999999998764 999999999999999999999974 578999999
Q ss_pred cCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 113 Ta~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++.+.+.+.++++.||+||+.||++.++|..+++++++..
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988643
No 93
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.73 E-value=3e-17 Score=176.24 Aligned_cols=118 Identities=32% Similarity=0.499 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipVI 110 (596)
.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.... |||||+|+.||++||++++++|+.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 48999999999999999999998999999999999999998765 9999999999999999999999753 578999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|+..+.+...++++.||+|||.||++.++|..+++++++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987643
No 94
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.73 E-value=7.5e-17 Score=144.06 Aligned_cols=120 Identities=20% Similarity=0.370 Sum_probs=104.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~-~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ip 108 (596)
.+++||||||++..+..++.+|+.. ++. +..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 4589999999999999999999875 788 458999999999998764 9999999999999999999999754 4567
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhhcc
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~~~ 155 (596)
||++|+..+ ...++++.|+++|+.||++.++|..+++++++.++.
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 889998754 467899999999999999999999999999876543
No 95
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=7.4e-17 Score=143.37 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=107.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CC
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DL 107 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~-~i 107 (596)
....+.+||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ .+
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~ 87 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSI 87 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTS
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCc
Confidence 3456789999999999999999999999999999999999999998764 99999 99999999999997557 89
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCC-CHHHHHHHHHHHHHhh
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl-~~eeL~~~l~~vlrk~ 153 (596)
|||++|+..+.+...++++.|+++|+.||+ +.++|..++++++++.
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999 9999999999887543
No 96
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.72 E-value=2.4e-17 Score=147.41 Aligned_cols=116 Identities=24% Similarity=0.442 Sum_probs=101.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc------cCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL------EMD 106 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~------~~~ 106 (596)
.++||||||++..+..++.+|+..++.+..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 469999999999999999999988999999999999999998754 999999999999999999999974 367
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|||++|+........ +.|+++|+.||++.++|..++++++++.
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 8999999876543332 7899999999999999999999988654
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.72 E-value=7.7e-17 Score=149.15 Aligned_cols=119 Identities=27% Similarity=0.365 Sum_probs=100.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~-y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ip 108 (596)
..+++||||||++..+..++.+|+..+ +. +..+.++.+|++.+.+.. ||+||+|+.||+++|++++++|+....+|
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTR 100 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCE
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCce
Confidence 456899999999999999999999874 33 458999999999998775 99999999999999999999998655599
Q ss_pred EEEEcCCCCHH--HHHHHHHcCCCeEEeCCCC---------HHHHHHHHHHHHH
Q 007601 109 VIMMSADGRVS--AVMRGIRHGACDYLIKPIR---------EEELKNIWQHVVR 151 (596)
Q Consensus 109 VIllTa~~d~~--~~~eAl~~GA~DYL~KPl~---------~eeL~~~l~~vlr 151 (596)
||++|+..+.. ...++++.||++||.||++ .++|..++++++.
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 99999977643 6779999999999999999 4566666655543
No 98
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.72 E-value=1.1e-16 Score=140.40 Aligned_cols=119 Identities=21% Similarity=0.358 Sum_probs=107.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCCE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdGleLl~~Ir~-~~~ipV 109 (596)
.+++||||||++..+..++..|+..+|.|..+.++.+|++.+.+.. .||+||+|+.||+ ++|++++++|+. .+.+||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGA-AIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC-CCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCC-CCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3579999999999999999999998999999999999999998751 4999999999997 999999999974 468999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
|++|+..+.+...++++.| +|+.||++.++|..+++++++..
T Consensus 83 i~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 9999999888887777765 89999999999999999998754
No 99
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.71 E-value=1.5e-17 Score=146.34 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=105.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
+++||||||++..+..++.+|+..++.+..+.+++++++.+.. . ||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999987753 3 999999999999999999999974 57899999
Q ss_pred EcCCCCH-----HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~-----~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+. +...++++.|+++|+.||++.++|..+++++..+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 9998875 66677889999999999999999999999887543
No 100
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.71 E-value=4.7e-17 Score=168.37 Aligned_cols=118 Identities=27% Similarity=0.359 Sum_probs=108.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~-~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ip 108 (596)
..+||||||++.++..++.+|.. .+|.|..+.++.+|++.+.... ||+||+|+.||++||+++++.|+. .+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 46799999999999999999974 5899999999999999998765 999999999999999999999975 35799
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
||++|+..+.+...++++.||+|||.||++.++|..+++.+++.
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~~ 139 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRS 139 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887653
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.70 E-value=4.9e-17 Score=138.37 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=103.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCCE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~---~~ipV 109 (596)
+.+||||||++..+..++.+|+..+|.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 358999999999999999999999999999999999999998765 9999999999999999999999754 68999
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
|++|+..+.. ++++.|+++|+.||++.++|..++++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999988775 8899999999999999999998887654
No 102
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.68 E-value=9e-17 Score=171.01 Aligned_cols=120 Identities=22% Similarity=0.299 Sum_probs=106.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~-~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ipVI 110 (596)
+++||||||++.++..++.+|+. .++.|..+.++.+|++.++... .||+||+|+.||+|||++++++++.. +..+||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~-~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCG-HVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHS-CEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 47999999999999999999998 5789999999999999998741 49999999999999999999999754 456777
Q ss_pred EEcCCCCH-----HHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~-----~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|+.++. ....++++.||+||+.||++.++|..+++++++..
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 77777766 66778999999999999999999999999988754
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.68 E-value=5.6e-17 Score=153.84 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=104.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCCEE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ipVI 110 (596)
.+++||||||++..+..++.+|+..+|.|..+.++.+++ . ..||+||+|+.||++||+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999998899999888877766 2 259999999999999999 88888765 889999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
++|++.+.+...++++.||+||+.||++.++|..+++.+++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888654
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.68 E-value=5.2e-17 Score=144.55 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=101.9
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhc-c
Q 007601 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-E 104 (596)
Q Consensus 27 ~~~fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e-~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~ 104 (596)
+...+.+.+||||||++..+..++.+|+..+|.|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+. .
T Consensus 9 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 9 HHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp -----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSS
T ss_pred ccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 4455678899999999999999999999999999999999999999876 54 999999999999999999999975 4
Q ss_pred CCCCEEEEc-CCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 105 MDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 105 ~~ipVIllT-a~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+.+|||++| +..+.+. .+++ +++|+.||++.++|..++++++++
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 689999999 8877665 5665 999999999999999999877543
No 105
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.67 E-value=2.6e-18 Score=148.68 Aligned_cols=119 Identities=34% Similarity=0.469 Sum_probs=108.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIl 111 (596)
..+||||||++..+..++..|+..+|.+..+.++.++++.+... .||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEE
Confidence 35799999999999999999998899999999999999988654 4999999999999999999999974 57899999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+..+.+...++++.|+++|+.||++.++|..+++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 999998888889999999999999999999999999988654
No 106
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.63 E-value=4.4e-16 Score=125.40 Aligned_cols=62 Identities=65% Similarity=1.082 Sum_probs=59.6
Q ss_pred CCCCCcccchHHHHHHHHHHHHHhccccccHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 007601 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRL 278 (596)
Q Consensus 217 ~~kK~~v~wt~eLh~~F~~av~~Lgl~ka~pK~ILe~m~v~gltre~taSHLqRvr~y~k~L 278 (596)
..+|+++.|+.|||..|++|+++||.++|+||.|+++|+++++|+++|+|||||||.+++++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 46789999999999999999999999999999999999999999999999999999999876
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.62 E-value=3.3e-15 Score=157.41 Aligned_cols=118 Identities=30% Similarity=0.442 Sum_probs=103.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~-V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
++|||||||++..++.++.+|+.. +|+ +..+.++.+|++.+.+.. ||+||+|+.||++||++++++|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 888 569999999999998765 9999999999999999999999755459999
Q ss_pred EEcCCCCH--HHHHHHHHcCCCeEEeCCCCH---------HHHHHHHHHHHHh
Q 007601 111 MMSADGRV--SAVMRGIRHGACDYLIKPIRE---------EELKNIWQHVVRK 152 (596)
Q Consensus 111 llTa~~d~--~~~~eAl~~GA~DYL~KPl~~---------eeL~~~l~~vlrk 152 (596)
++|+..+. +...++++.||+||+.||++. ++|...++++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99998875 457899999999999999983 7777777777653
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.59 E-value=1.7e-15 Score=152.09 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=86.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~-~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
+.|||||||++.+++.++..|... ++.+..+ ++.+++..+... .||+||+|+.||++||++++++|+. ..+|||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~-~~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLE-RGLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHH-TTCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHh-CCCCEEE
Confidence 358999999999999999999764 7777544 555555554433 5999999999999999999999985 4699999
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEeCCCCH
Q 007601 112 MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~KPl~~ 139 (596)
+|++.+.+...++++.||+||+.||+..
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999643
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.54 E-value=5.4e-15 Score=170.27 Aligned_cols=120 Identities=13% Similarity=0.202 Sum_probs=109.2
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHHHHHHH
Q 007601 34 LRVLVVDDDI-TC-------LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD----MDGFKLLEHI 101 (596)
Q Consensus 34 irVLIVDDd~-~i-------~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd----mdGleLl~~I 101 (596)
|||||||||+ .+ ++.|+..|+..+|+|..+.++++|++.+.+.. .||+||+|++||+ +||++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 4899999999 88 99999999999999999999999999998642 4999999999999 9999999999
Q ss_pred hcc-CCCCEEEEcCCCC-HHHHHHHHHcCCCeEEeCCCCHHH-HHHHHHHHHHhhc
Q 007601 102 GLE-MDLPVIMMSADGR-VSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVRKRW 154 (596)
Q Consensus 102 r~~-~~ipVIllTa~~d-~~~~~eAl~~GA~DYL~KPl~~ee-L~~~l~~vlrk~~ 154 (596)
|+. ..+|||++|+.++ .+....++..||+||+.||++..+ |...+++++|++.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 854 5899999999877 777888999999999999999999 8889999998753
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.96 E-value=1.3e-08 Score=108.95 Aligned_cols=118 Identities=21% Similarity=0.279 Sum_probs=100.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~~ip 108 (596)
.+.+|++|||+...+..+...|.. .+.+....++.+++. .... .||++++|+.||+|||+++++.++. ...+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 356899999999998888888866 467777888888863 3333 5999999999999999999999974 35789
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
||++|+..+.....++++.|++||+.||++.+++...+..+++.+
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887776543
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.96 E-value=6.2e-10 Score=107.30 Aligned_cols=93 Identities=24% Similarity=0.403 Sum_probs=78.4
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
+.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+. .+..++++++.....+...++++.|+++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 45566889999999998765 999999999999999999999974 456677777777778889999999999999999
Q ss_pred --CCHHHHHHHHHHHHHh
Q 007601 137 --IREEELKNIWQHVVRK 152 (596)
Q Consensus 137 --l~~eeL~~~l~~vlrk 152 (596)
++..++...+.+.+..
T Consensus 84 ~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFGS 101 (237)
T ss_dssp HHHHCTHHHHHHHHHHTG
T ss_pred cccChHHHHHHHHHHhCC
Confidence 7777888777776643
No 112
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=98.08 E-value=1.6e-06 Score=90.48 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhhcCCCcccccc-ccccccccCcCccee--eeeccCCCCChHHHHHHHHh-hcC
Q 007601 258 GLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAP-IETNVKLGSLGRFDI--QALAASGQIPPQTLAALHAE-LLG 332 (596)
Q Consensus 258 gltre~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~-i~~AspLHDiGKi~i--~iL~KpGkL~~ee~~imk~~-~~G 332 (596)
....+.+..|..+|+.++..| |+.+|++++.+.. +..|+.||||||+.+ .||.|+|+|+++||+.|+.| .+|
T Consensus 161 ~~~~~~~~~Hs~~Va~la~~l---a~~lgl~~~~~~~~l~~aaLLHDIGk~~ip~~il~k~~~L~~~E~~~~~~H~~~G 236 (328)
T 3tm8_A 161 ENTDKTISHHGVTVSTLSIAL---AQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEG 236 (328)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH---HHHHTCCCHHHHHHHHHHHHHTTGGGTTCSCCCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHH---HHHcCcCHHHHHHHHHHHHHHhcCCcccCCHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 344457999999999999999 9999999999999 999999999999998 99999999999999999983 445
No 113
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.22 E-value=0.00057 Score=67.58 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=71.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
...+.+||||||++..++.++..|..+|++|..+.+. ....+|++|+|..|++..+. ..+
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~~-----------~~~ 67 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQG-----------RAV 67 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCCS-----------SEE
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCcccccc-----------ceE
Confidence 3567899999999999999999999999999887651 12359999999999875431 125
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|.++...... ....+...++.||+...++...+.+++.
T Consensus 68 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 68 VTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 5565543210 0123456799999998888888777653
No 114
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.00 E-value=0.00076 Score=77.33 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCCEEEEcCCCCHHHHHH
Q 007601 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMR 123 (596)
Q Consensus 45 i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ipVIllTa~~d~~~~~e 123 (596)
..+.|...|++.+|+|..+.+.++|+..++++. .++.||+|+.|+ +.+++++|| .+.++||++++.......+.-
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~-~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHCT-TEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCC-CceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 345566888888999999999999999999874 799999999886 789999997 567999999988754322211
Q ss_pred HHHcCCCeEEeCCC-CHHHHHHHHHHHHHhhc
Q 007601 124 GIRHGACDYLIKPI-REEELKNIWQHVVRKRW 154 (596)
Q Consensus 124 Al~~GA~DYL~KPl-~~eeL~~~l~~vlrk~~ 154 (596)
....++++|+.+.. +.+.+...+.++.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 125 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTDEYI 125 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 12357889999985 56666667777766653
No 115
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=96.53 E-value=0.00034 Score=71.81 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee-------------eeeccCCCCChHHHH
Q 007601 258 GLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI-------------QALAASGQIPPQTLA 324 (596)
Q Consensus 258 gltre~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i-------------~iL~KpGkL~~ee~~ 324 (596)
....+....|..+++.+++.| |+..|++ ..+.+..++.||||||+.+ .++.|+++|+++|++
T Consensus 113 ~~~~~~~~~hs~~va~~a~~l---a~~~~~~--~~~~~~~agllHDIGkl~l~~~~p~~~~~il~~~~~~~~~l~~~E~~ 187 (305)
T 3hc1_A 113 PLNRSTLWAHSLGVARIAKLI---AERTGFL--NPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEER 187 (305)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH---HHHTTCS--CHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH---HHHcCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 345678999999999999999 9998886 3678889999999999986 236799999999999
Q ss_pred HHH-H-hhcC
Q 007601 325 ALH-A-ELLG 332 (596)
Q Consensus 325 imk-~-~~~G 332 (596)
+|+ + ..+|
T Consensus 188 ~~~~~H~~iG 197 (305)
T 3hc1_A 188 LFGTSHCEVG 197 (305)
T ss_dssp HHSSCHHHHH
T ss_pred HHCCCHHHHH
Confidence 997 4 4555
No 116
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.82 E-value=0.038 Score=48.21 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=78.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC-CCCCHHHHHHHHhc---cCCCCE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGL---EMDLPV 109 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~M-PdmdGleLl~~Ir~---~~~ipV 109 (596)
-.||+|-.|-.+.-.+++++....|.++......+ .-.-|+|++++-+ |+. |.. ....-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe~--------ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPRE--------IRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCTT--------CCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChHH--------hcCCCCCCcccE
Confidence 46899999998888999999888899887654321 1137999999875 531 221 223446
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
|++-..=+.+...+.++.||. ||+.|+++.-|..++++.+|.
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 666666677888999999999 999999999999999998874
No 117
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.75 E-value=0.059 Score=51.03 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC-CCCCCCH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE------eC
Q 007601 65 QAAVALDILRERKGCFDVVLSDV-HMPDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IK 135 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI-~MPdmdG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL------~K 135 (596)
+..+.++.+.... ..++++.++ .++.++| .+++++++...++|||.+++....+...++++.|+++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666665543 357999997 5666666 556777766678999999999999999999999999985 67
Q ss_pred CCCHHHHHHHHH
Q 007601 136 PIREEELKNIWQ 147 (596)
Q Consensus 136 Pl~~eeL~~~l~ 147 (596)
|++..++++.++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 888888877543
No 118
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=95.64 E-value=0.0012 Score=63.48 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee--eeeccCCC----CChHHHHHHHH-hhcC
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQ----IPPQTLAALHA-ELLG 332 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGk----L~~ee~~imk~-~~~G 332 (596)
+.+-.|..+|+..+..| |+..|++.+ .+..|+-||||||+.+ .++.++++ |+++|+..++. ..+|
T Consensus 25 ~~~~~Hs~~Va~~A~~l---A~~~g~d~~---~~~~AgLLHDIGK~~~~~~il~~~~~~~~~l~~~E~~~~~~H~~~G 96 (196)
T 2ogi_A 25 DKRFNHVLGVERAAIEL---AERYGYDKE---KAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVG 96 (196)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTCCHH---HHHHHHHHTTTTTTCCHHHHHHHHHHHCCCTGGGGSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHCcCHH---HHHHHHHHHHcCCcCCHHHHHHHHHhcCCCCCHHHHHHHhccHHHH
Confidence 56889999999999999 999999765 4677889999999977 67766554 78888877777 3445
No 119
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=95.37 E-value=0.0013 Score=62.82 Aligned_cols=61 Identities=10% Similarity=-0.060 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee--eeeccCCC----CChHHHHHHHH
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQ----IPPQTLAALHA 328 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGk----L~~ee~~imk~ 328 (596)
+.+-.|..+|+.++..| |+..|++.+ .+..|+-||||||+.+ .++.++++ |+++|+..++.
T Consensus 17 ~~~~~Hs~~Va~~A~~l---A~~~g~~~~---~~~~agLLHDIGk~~~~~~il~~~~~~~~~l~~~e~~~~~~ 83 (188)
T 2o08_A 17 EHRYQHTIGVMETAIDL---AKLYGADQQ---KAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELL 83 (188)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTCCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGS
T ss_pred HHHHHHHHHHHHHHHHH---HHHHCcCHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCHHHHHHHhh
Confidence 46889999999999999 999999765 3677889999999976 66666554 67777755554
No 120
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=95.02 E-value=0.0022 Score=61.23 Aligned_cols=61 Identities=7% Similarity=-0.091 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee--eeeccCCC----CChHHH-HHHHH
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI--QALAASGQ----IPPQTL-AALHA 328 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i--~iL~KpGk----L~~ee~-~imk~ 328 (596)
+.+-.|..+|+.++..| |+..|++.+ .+..|+-||||||+.+ .++.++++ |+++|. ..++.
T Consensus 18 ~~~~~Hs~~Va~~A~~l---A~~~g~d~~---~~~~AgLLHDiGk~~~~~~il~~~~~~~~~l~~~E~~~~~~~ 85 (190)
T 3ccg_A 18 EKRYKHSLGVMDTAVRL---AGIYNEDTE---KARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLL 85 (190)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHTCCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHH---HHHHCcCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCHHHHhHHHcc
Confidence 45889999999999999 999999875 3677889999999987 67776654 677776 44444
No 121
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=93.46 E-value=1.3 Score=41.12 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=81.9
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 007601 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (596)
Q Consensus 32 ~girVLIV----DDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPd-m-dGleLl~~Ir 102 (596)
...||++. |.+..=...+..+|+..||+|.. ....++..+.+.+.. +|+|.+-..|.. + .--++++.|+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHH
Confidence 45688888 88888889999999999999973 456788888888764 999999887753 2 2334556665
Q ss_pred cc--CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 103 LE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 103 ~~--~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+. .+++|++ -+..-.+....+.+.|++.++..--+..+....++..+.++
T Consensus 95 ~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 3566654 45444434444558999876655456666666666666543
No 122
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=90.13 E-value=2 Score=42.23 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=68.8
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 007601 33 GLRVLVVDD----DITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (596)
Q Consensus 33 girVLIVDD----d~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~------MPdmdGleLl~~I 101 (596)
|..++++|- +|.....+.+.+++.+..+. .+.+.+++....+. .+|+|.+-.+ .+...++++++++
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 445566553 23333344444455565554 77888888877653 4898864322 2234568999999
Q ss_pred hccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 102 r~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+.. ++|||.-.+-.+.+.+.++++.||+..+.=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 765 899999999999999999999999999874
No 123
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=88.36 E-value=0.18 Score=50.66 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=63.6
Q ss_pred HHHHHHHhccccccHHHHHHHhcCCC-------C---ChHHHHHHHHHHHHHHHHHhhhhhhc----CCCcccccccccc
Q 007601 233 FVSAVNQLGIDKAVPKRILELMNVPG-------L---TRENVASHLQKFRLYLKRLNGVSQQG----GITNSFCAPIETN 298 (596)
Q Consensus 233 F~~av~~Lgl~ka~pK~ILe~m~v~g-------l---tre~taSHLqRvr~y~k~L~~~A~~~----Gls~~~~e~i~~A 298 (596)
.-+|+..||++.- +.++..+.... . ..+.+-.|..+++.+++.| |+.. |++....+.+..+
T Consensus 79 i~~Av~~LG~~~l--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~l---a~~~~~~~~~~~~~~~~~~la 153 (281)
T 3i7a_A 79 INSAVTRIGLTQI--KSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSL---LQIYNKKHPGSGLNYDTLTLA 153 (281)
T ss_dssp HHHHHHHHCTTTH--HHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSTTCCCCHHHHHHH
T ss_pred HHHHHHHHhHHHH--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccccCCCCHHHHHHH
Confidence 3467888887754 34444332211 1 1235788999999999999 7776 6677777888889
Q ss_pred ccccCcCccee--eeeccCCCCChHH---HHHHHH-hhcC
Q 007601 299 VKLGSLGRFDI--QALAASGQIPPQT---LAALHA-ELLG 332 (596)
Q Consensus 299 spLHDiGKi~i--~iL~KpGkL~~ee---~~imk~-~~~G 332 (596)
..||||||+.+ .+..+++.++..+ ...++. ..+|
T Consensus 154 GLLHdiGkl~l~~~~~~~~~~l~~~~~~~~~~~~~H~~iG 193 (281)
T 3i7a_A 154 GLVHNIGALPVLTEAEAHPEMFTTIEHLRSLVRKMQGPIG 193 (281)
T ss_dssp HHHTTTTHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHhHHhhHHHhcChHHHHHHHhCcHHHHH
Confidence 99999999986 5566777776543 344444 3445
No 124
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.08 E-value=3.8 Score=42.55 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=75.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~---~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ip 108 (596)
..+|+.|+|.|+...+.|..++... .|++..+++.+.+.+.+++.+ +|++|+|-.+.... . ......+
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-----~--~~~~~~~ 90 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-----S--EFKRNCG 90 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-----G--GGCSSCE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-----h--hhcccCc
Confidence 4789999999999999999999753 688999999999999998764 99999998775421 1 1123356
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
+++++.....+ ...-...+.|--+.+++.+.+...+.
T Consensus 91 v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~~ 127 (373)
T 3fkq_A 91 LAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVYS 127 (373)
T ss_dssp EEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHHh
Confidence 66666543221 11122467888888888776666553
No 125
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=87.80 E-value=4.3 Score=39.80 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=67.8
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 007601 33 GLRVLVVDD----DITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (596)
Q Consensus 33 girVLIVDD----d~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~------MPdmdGleLl~~I 101 (596)
|..++++|- +|.....+.+.+++.+..+. .+.+.+++..+.+. .+|+|.+-.+ .....++++++++
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 445555543 23333344444455565554 67888888776653 4898864322 1223468999999
Q ss_pred hccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 102 r~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+.. ++|||.-.+-.+.+.+.++++.||+..+.=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 765 899999999889999999999999998764
No 126
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=85.86 E-value=8.1 Score=38.98 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=76.7
Q ss_pred ccEEEEE-------eCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHH
Q 007601 33 GLRVLVV-------DDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (596)
Q Consensus 33 girVLIV-------DDd~~i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MP-----dmdGleLl 98 (596)
.+|+=|+ .|.....+..+. |.+.||.|. +..+...|..+. +. .++.| +.+-.| +..-++++
T Consensus 105 ~iKlEv~~d~~~llpD~~~tv~aa~~-L~~~Gf~Vlpy~~dd~~~akrl~-~~--G~~aV-mPlg~pIGsG~Gi~~~~lI 179 (265)
T 1wv2_A 105 LVKLEVLADQKTLFPNVVETLKAAEQ-LVKDGFDVMVYTSDDPIIARQLA-EI--GCIAV-MPLAGLIGSGLGICNPYNL 179 (265)
T ss_dssp EEEECCBSCTTTCCBCHHHHHHHHHH-HHTTTCEEEEEECSCHHHHHHHH-HS--CCSEE-EECSSSTTCCCCCSCHHHH
T ss_pred eEEEEeecCccccCcCHHHHHHHHHH-HHHCCCEEEEEeCCCHHHHHHHH-Hh--CCCEE-EeCCccCCCCCCcCCHHHH
Confidence 4566666 344444444444 445589877 555666665544 33 37777 554443 12237899
Q ss_pred HHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHH
Q 007601 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (596)
Q Consensus 99 ~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP-----l~~eeL~~~l~~vlr 151 (596)
+.|++..++|||.=-+-...+.+.+++++||+..+.=. -++.++...+..++.
T Consensus 180 ~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 180 RIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 99988889999998888999999999999999987654 346666666666654
No 127
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=80.65 E-value=14 Score=31.75 Aligned_cols=118 Identities=11% Similarity=0.196 Sum_probs=64.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH-HHHHHhc-cCCCCEEE
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGL-EMDLPVIM 111 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGle-Ll~~Ir~-~~~ipVIl 111 (596)
+-|++..-|+..+..++.+++..||.|.++.+..+....+++.-..+..-|+=+...+...-+ .++.++. ...+-||+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliii 82 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIII 82 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEE
Confidence 334555677778888999999999999999999998888776433344322222222322111 1222222 12333443
Q ss_pred EcCCCCHHHHHHHH-HcCCCeEEeCC-CCHHHHHHHHHHHHHhh
Q 007601 112 MSADGRVSAVMRGI-RHGACDYLIKP-IREEELKNIWQHVVRKR 153 (596)
Q Consensus 112 lTa~~d~~~~~eAl-~~GA~DYL~KP-l~~eeL~~~l~~vlrk~ 153 (596)
. .++ .....+.- +..-.+|-... -++++++..+.+++|..
T Consensus 83 y-dqd-qnrleefsrevrrrgfevrtvtspddfkkslerlirev 124 (134)
T 2l69_A 83 Y-DQD-QNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp E-CSC-HHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHH
T ss_pred E-eCc-hhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHHh
Confidence 3 222 22221111 12222343444 36788888888887753
No 128
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=79.64 E-value=15 Score=32.83 Aligned_cols=106 Identities=13% Similarity=0.004 Sum_probs=69.9
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc--CCCCEEEE
Q 007601 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE--MDLPVIMM 112 (596)
Q Consensus 40 DDd~~i~~~L~~lL~~~~y~V~---~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-md-GleLl~~Ir~~--~~ipVIll 112 (596)
|-+..=...+..+|+..||+|. .....++..+.+.+.. +|+|.+-..|.. +. --++++.+++. .+++|++
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~v- 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYV- 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEE-
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEE-
Confidence 5556667788889999999986 5677889999888765 999999887753 21 23355566532 2566654
Q ss_pred cCC-----CCHHH-HHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 007601 113 SAD-----GRVSA-VMRGIRHGACDYLIKPIREEELKNIWQH 148 (596)
Q Consensus 113 Ta~-----~d~~~-~~eAl~~GA~DYL~KPl~~eeL~~~l~~ 148 (596)
-+. .+... ...+.+.|++.|+.---+..++...+..
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 443 22322 3446689998888655666666555543
No 129
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=78.43 E-value=23 Score=35.78 Aligned_cols=123 Identities=9% Similarity=0.097 Sum_probs=84.3
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 007601 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (596)
Q Consensus 28 ~~fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ 106 (596)
+-+...+.|-+.--++.....+..+|....|.+..+.+.++.++.++++++.+|.+++..- +.+-..+..++. ...-
T Consensus 4 ~~~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~l 81 (289)
T 1r8j_A 4 DIVLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVV 81 (289)
T ss_dssp --CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCC
T ss_pred cccccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCcc
Confidence 4456678899999999999999999988899999999999999999998889999998751 223466777775 4456
Q ss_pred CCEEEEcCCCCHHHHHH---HHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 107 LPVIMMSADGRVSAVMR---GIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 107 ipVIllTa~~d~~~~~e---Al~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+|+|++...+.. .-.+ -+.+...+.-...-..+++...+.+++.+.
T Consensus 82 LP~vil~~~~~~-~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 82 VPAIVVGDRDSE-DPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp CCEEEESCCC-------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred ccEEEeccCccc-cCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 899988654220 0000 012222223333445677777777777654
No 130
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=77.11 E-value=28 Score=34.32 Aligned_cols=112 Identities=15% Similarity=0.082 Sum_probs=74.4
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCH-HHHHHHH
Q 007601 31 PAGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMP-DMDG-FKLLEHI 101 (596)
Q Consensus 31 p~girVLIV----DDd~~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MP-dmdG-leLl~~I 101 (596)
..+-+||+. |-|..=...+..+|+..||+|.. -...++..+.+.+.. ||+|.+-..|. .+.. -++++.+
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l 198 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDML 198 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHH
Confidence 345678887 77788888999999999999852 346777778777765 99999988876 3443 3467777
Q ss_pred hc-cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 102 GL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 102 r~-~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
++ .+.+||++=-.....+.. -+.|++.|-.-. .+....++.++
T Consensus 199 ~~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 199 LENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp HTTTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred HhcCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 64 356777765444444432 367887665433 44444444444
No 131
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=75.76 E-value=0.52 Score=47.66 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee---------eeeccCCC--CChHHHHHH
Q 007601 260 TRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI---------QALAASGQ--IPPQTLAAL 326 (596)
Q Consensus 260 tre~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i---------~iL~KpGk--L~~ee~~im 326 (596)
..+..-.|..+++.+++.| |+..|.. ..+.+..+..||||||+.+ .++.++.. ++..|++++
T Consensus 105 ~~~~~~~hs~~~A~~a~~l---a~~~~~~--~~~~~~~agLLhdiGkl~l~~~~p~~~~~il~~~~~~~l~~~E~~~l 177 (288)
T 3ljx_A 105 DYAAYWQKSLARAVALQSI---TAQASTV--APKEAFTLGLLADVGRLALATAWPEEYSECLRKADGEALIALERERF 177 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HHTSSSS--CHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH---HHHCCCC--CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3456888999999999999 8888876 3677788889999999975 34444432 556666665
No 132
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=74.52 E-value=0.21 Score=50.58 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee-e----------eec---cCCCCChHHHHH
Q 007601 260 TRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI-Q----------ALA---ASGQIPPQTLAA 325 (596)
Q Consensus 260 tre~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i-~----------iL~---KpGkL~~ee~~i 325 (596)
..+..-.|-.+++.++..+ +...+ ....+.+..|+.||||||+.+ . ++. ++++|+..|++.
T Consensus 121 ~~~~~~~hs~~va~~a~~l---a~~~~--~~~~e~a~~aGLLHDIGkl~l~~~~p~~~~~~~il~~~~~~~~l~~~E~~~ 195 (297)
T 1vqr_A 121 NTQNFLKTCNEEATFIANW---LNDED--KKLSHLLVPCAMLLRLGIVIFSNFLIQNHKDKDFLAFLNKNENLALAENEF 195 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH---HHhcc--CCCHHHHHHHHHHHHccHHHHHHHChhhhhHHHHHHHHHcCCCHHHHHHHH
Confidence 3445777888888888888 66654 455677788899999999986 2 343 257888888888
Q ss_pred HH
Q 007601 326 LH 327 (596)
Q Consensus 326 mk 327 (596)
+.
T Consensus 196 ~g 197 (297)
T 1vqr_A 196 LG 197 (297)
T ss_dssp TS
T ss_pred HC
Confidence 73
No 133
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=73.70 E-value=0.88 Score=45.59 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee-e--------ee---ccCCCCChHHHH
Q 007601 257 PGLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI-Q--------AL---AASGQIPPQTLA 324 (596)
Q Consensus 257 ~gltre~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i-~--------iL---~KpGkL~~ee~~ 324 (596)
++...+..-.|..+++.+++.| |+..|++. +.+..+..||||||+-+ . ++ .+...++..|++
T Consensus 99 ~~~~~~~~~~hs~~~a~~a~~l---a~~~~~~~---~~~~~agLLhdiGkl~l~~~~p~~~~~i~~~~~~~~~~~~~E~~ 172 (275)
T 3m1t_A 99 EGFDLADFWGNTFEVAIICQEL---AKRLGTLP---EEAFTCGILHSIGELLIVNGDPAVAATISAAVADGADRNLMEKE 172 (275)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH---HHHHTSCH---HHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHH---HHHhCCCH---HHHHHHHHHHHccHHHHHHHCHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444567889999999999999 88888753 55677888999999976 1 22 233455556666
Q ss_pred HHH
Q 007601 325 ALH 327 (596)
Q Consensus 325 imk 327 (596)
++.
T Consensus 173 ~lg 175 (275)
T 3m1t_A 173 LLG 175 (275)
T ss_dssp HHS
T ss_pred HHC
Confidence 654
No 134
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=73.21 E-value=22 Score=33.11 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=50.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-------mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
.+.+..++.+... . .+|.|+++-..|. ..+++.+++++...++||++..+-. .+.+.++++.|++.+..
T Consensus 114 ~~~t~~e~~~~~~-~--g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEK-K--GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHH-H--TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHh-c--CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 5678888765543 2 3899999865553 3478888888755688999877766 66777888999998754
No 135
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=71.67 E-value=14 Score=37.38 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=70.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-----HHHHHHHHhc-cCC-CCEE
Q 007601 40 DDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMD-----GFKLLEHIGL-EMD-LPVI 110 (596)
Q Consensus 40 DDd~~i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmd-----GleLl~~Ir~-~~~-ipVI 110 (596)
.|.....+..+.+.++ +|.|. +..|...|.++.+ .. ++.| +++-.|-.. -.++++.+++ ..+ +|||
T Consensus 108 pD~~~tv~aa~~L~k~-Gf~Vlpy~~~D~~~ak~l~~-~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI 182 (268)
T 2htm_A 108 PDPLETLKAAERLIEE-DFLVLPYMGPDLVLAKRLAA-LG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVV 182 (268)
T ss_dssp CCHHHHHHHHHHHHHT-TCEECCEECSCHHHHHHHHH-HT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBE
T ss_pred cCHHHHHHHHHHHHHC-CCEEeeccCCCHHHHHHHHh-cC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEE
Confidence 3444445555555544 88876 4456655544443 33 6666 554443112 2566888876 677 9999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCC-----CCHHHHHHHHHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KP-----l~~eeL~~~l~~vlr 151 (596)
+=.+-...+.+..++++||++.+.=. -++..+...+..++.
T Consensus 183 ~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 183 VDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp EESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 98888999999999999999987643 346666666666654
No 136
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=70.62 E-value=51 Score=32.95 Aligned_cols=89 Identities=12% Similarity=-0.003 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEeCC---CCCCCHHHHHHHHhc-cC-CCCEEEEcCCC
Q 007601 43 ITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH---MPDMDGFKLLEHIGL-EM-DLPVIMMSADG 116 (596)
Q Consensus 43 ~~i~~~L~~lL~~~~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~---MPdmdGleLl~~Ir~-~~-~ipVIllTa~~ 116 (596)
+.....+....+..+..+ ..+.+.+++...+.. .+|+|-+.-. .... +++.++++.. .+ ++|||..++-.
T Consensus 148 ~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v~~~~pvVaegGI~ 223 (272)
T 3qja_A 148 QSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDV-DRDCFARIAPGLPSSVIRIAESGVR 223 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCB-CTTHHHHHGGGSCTTSEEEEESCCC
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCccccccc-CHHHHHHHHHhCcccCEEEEECCCC
Confidence 333444455555667765 477888887666643 3788877532 2122 3566677753 33 78999999999
Q ss_pred CHHHHHHHHHcCCCeEEeC
Q 007601 117 RVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 117 d~~~~~eAl~~GA~DYL~K 135 (596)
..+.+.++.++|+++++.=
T Consensus 224 t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 224 GTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp SHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHcCCCEEEEc
Confidence 8999999999999999874
No 137
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=69.68 E-value=13 Score=36.88 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=49.1
Q ss_pred CceEEEEeCCCCC--CC--------------------HHHHHHHHhccC-CCCEEEEcCCCC------HHHHHHHHHcCC
Q 007601 79 CFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEM-DLPVIMMSADGR------VSAVMRGIRHGA 129 (596)
Q Consensus 79 ~pDLVLlDI~MPd--md--------------------GleLl~~Ir~~~-~ipVIllTa~~d------~~~~~eAl~~GA 129 (596)
..|+|.+++-..+ .| .+++++++|... ++|+++++-... ......+.+.|+
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~ 123 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 4899999875432 23 446677777554 899999854321 244566779999
Q ss_pred CeEEeCCCCHHHHHHHHHHH
Q 007601 130 CDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 130 ~DYL~KPl~~eeL~~~l~~v 149 (596)
++++.-.+..+++...+..+
T Consensus 124 dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 124 DGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp CEEECTTCCHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHH
Confidence 99999778888876655544
No 138
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=69.16 E-value=17 Score=34.39 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=66.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhc
Q 007601 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGL 103 (596)
Q Consensus 33 girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a---~sg~eALe~L~e~~~~pDLVLlDI~MPd-mdG-leLl~~Ir~ 103 (596)
+-+|++. |-+..-...+..+|+..||+|... ...++..+.+++.. ||+|.+-..|.. +.. -++++.+++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 4578888 777888899999999999998743 35667777777664 999999887753 333 345666754
Q ss_pred c---CCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 104 ~---~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
. +++||++=-...+.+.. -+.|++.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 2 35777765444444333 4568886654
No 139
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=69.03 E-value=37 Score=33.44 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=53.1
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcc--CCCCEEEEcCCCCHHHHHHHHHcCCCe
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACD 131 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-------mdGleLl~~Ir~~--~~ipVIllTa~~d~~~~~eAl~~GA~D 131 (596)
.++.+.+|+.+..+. .+|.|.+.-..|. .-|++.+++++.. .++|||.+.+- +.+.+.++++.||++
T Consensus 140 ~S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 140 RSTHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EEECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred EeCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 378899998776653 4899998665442 2378889988754 48999999887 566788899999999
Q ss_pred EEe
Q 007601 132 YLI 134 (596)
Q Consensus 132 YL~ 134 (596)
+..
T Consensus 216 vav 218 (243)
T 3o63_A 216 IVV 218 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 140
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=68.17 E-value=18 Score=34.94 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=67.4
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEE--eCCCC-CCC-HHHHHHH
Q 007601 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLS--DVHMP-DMD-GFKLLEH 100 (596)
Q Consensus 32 ~girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a---~sg~eALe~L~e~~~~pDLVLl--DI~MP-dmd-GleLl~~ 100 (596)
.+-||++. |-|..=...+..+|+..||+|... ...++.++.+.+.. ||+|.+ -..|. .+. --++++.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~ 168 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDR 168 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHH
Confidence 34578877 777888888999999999998743 35777778888765 999999 88775 333 3446666
Q ss_pred Hhcc-C--CCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 101 IGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 101 Ir~~-~--~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
+++. . ++||++=-+.-..+.+ -+.||+.|-.
T Consensus 169 l~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~ 202 (215)
T 3ezx_A 169 LNEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAE 202 (215)
T ss_dssp HHHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCS
T ss_pred HHHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEEC
Confidence 7543 2 5777765444454433 3569988854
No 141
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=67.54 E-value=34 Score=32.36 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=42.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEE
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
|+...+|+++--.+...+..+.+..+...++. ...+.+++++..++..+.+|+||.
T Consensus 1 m~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 35567999999999999999998887665654 456788888877663336899886
No 142
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=67.53 E-value=22 Score=33.72 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=51.6
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-------mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
..+.+.+++.+.... ..|.|+++-..+. .-|++.++.++...++|||..-+- +.+.+.++++.||+.+.
T Consensus 115 ~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~ 190 (221)
T 1yad_A 115 RSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIA 190 (221)
T ss_dssp EEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEE
T ss_pred EEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 367788887766543 3899999765432 236888888865558999988887 77888899999999875
Q ss_pred e
Q 007601 134 I 134 (596)
Q Consensus 134 ~ 134 (596)
.
T Consensus 191 v 191 (221)
T 1yad_A 191 V 191 (221)
T ss_dssp E
T ss_pred E
Confidence 5
No 143
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=66.68 E-value=12 Score=37.19 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=49.7
Q ss_pred CceEEEEeCCCC--CCC--------------------HHHHHHHHhcc-CCCCEEEEcCCC------CHHHHHHHHHcCC
Q 007601 79 CFDVVLSDVHMP--DMD--------------------GFKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGA 129 (596)
Q Consensus 79 ~pDLVLlDI~MP--dmd--------------------GleLl~~Ir~~-~~ipVIllTa~~------d~~~~~eAl~~GA 129 (596)
..|+|-+|+-.. -+| ++++++.||+. .++||++|+-.. ....+..+.+.|+
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 489999998442 233 45667788766 789999875222 2455677889999
Q ss_pred CeEEeCCCCHHHHHHHHHHH
Q 007601 130 CDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 130 ~DYL~KPl~~eeL~~~l~~v 149 (596)
++++.-.+..+++...+..+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99999778877766655544
No 144
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=66.46 E-value=11 Score=36.34 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=38.8
Q ss_pred HHHHHHHHhccCCCCEEEEcCCCC------HHHHHHHHHcCCCeEEeCCCCHHHHHHHHH
Q 007601 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIllTa~~d------~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~ 147 (596)
++++++++++..++||++++.... .+.+..+++.||+..+.-.+..++....++
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 377888888666789998874332 467778889999999986666665544433
No 145
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=65.86 E-value=56 Score=34.17 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=67.9
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 007601 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (596)
Q Consensus 33 girVLIVD----Dd~~i~~~L~~lL~~~-~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd------------md 93 (596)
+..++++| +.+...+.++.+-+.+ +..| ..+.+.++|..+.+. ..|.|.+-+. |+ ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 56678876 3455666666666554 4444 368899999887764 3798888321 21 23
Q ss_pred HHHHHHHHh---ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 94 GleLl~~Ir---~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.++++..+. ...++|||.--+-.+...+.+++.+||+....=
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 455666553 245799999888888889999999999887653
No 146
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=64.71 E-value=22 Score=35.31 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEE-eCCCC---CCCHHHHHHHHhccCCCCEEEEcCCCC
Q 007601 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLS-DVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGR 117 (596)
Q Consensus 44 ~i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLl-DI~MP---dmdGleLl~~Ir~~~~ipVIllTa~~d 117 (596)
...+..++++.. ++.+. .+.+.+++....+. . .|.|+. -.... +..+.++++++++..++|||+..+-.+
T Consensus 114 ~~~~~a~~~~~~-g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t 189 (264)
T 1xm3_A 114 ETLKASEQLLEE-GFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGS 189 (264)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS
T ss_pred HHHHHHHHHHCC-CeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 444444454443 55444 55666666555443 2 566532 00001 223578888887777899999999999
Q ss_pred HHHHHHHHHcCCCeEEeC
Q 007601 118 VSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 118 ~~~~~eAl~~GA~DYL~K 135 (596)
.+.+.++++.||+..+.=
T Consensus 190 ~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 190 PKDAAYAMELGADGVLLN 207 (264)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999998764
No 147
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=64.28 E-value=85 Score=29.13 Aligned_cols=100 Identities=9% Similarity=-0.013 Sum_probs=59.2
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCeEEE----ECCHHHHHHHHHhcCCCceEEEEeCCCC----CCCHHHHHHHHh
Q 007601 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHMP----DMDGFKLLEHIG 102 (596)
Q Consensus 33 girVLIVDDd~--~i~~~L~~lL~~~~y~V~~----a~sg~eALe~L~e~~~~pDLVLlDI~MP----dmdGleLl~~Ir 102 (596)
|...+++-+.+ .....+.+.+++.+..+.. ..+..+.++.+.+.. .|.|.++.... ...+++.+++++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 34455555543 3334555556665666543 234434344444433 78877763210 113578888887
Q ss_pred cc-CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 103 LE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 103 ~~-~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+. +++||++-.+-. .+.+.++++.||+..+.=
T Consensus 155 ~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 155 KVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp HHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEEC
T ss_pred HHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 54 578888776664 677888999999987653
No 148
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=62.72 E-value=13 Score=37.42 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=49.7
Q ss_pred CceEEEEeCCC--CCCCH--------------------HHHHHHHhcc-CCCCEEEEcCCC------CHHHHHHHHHcCC
Q 007601 79 CFDVVLSDVHM--PDMDG--------------------FKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGA 129 (596)
Q Consensus 79 ~pDLVLlDI~M--PdmdG--------------------leLl~~Ir~~-~~ipVIllTa~~------d~~~~~eAl~~GA 129 (596)
..|+|=+++-. |-+|| +++++++|.. .++||++|+-.+ -.....++.+.|+
T Consensus 45 GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGv 124 (267)
T 3vnd_A 45 GADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGV 124 (267)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 48888888644 22333 6777777765 789999986432 2445777889999
Q ss_pred CeEEeCCCCHHHHHHHHHHH
Q 007601 130 CDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 130 ~DYL~KPl~~eeL~~~l~~v 149 (596)
++.+.-.+..++.......+
T Consensus 125 dgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 125 DSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp CEEEETTSCGGGCHHHHHHH
T ss_pred CEEEeCCCCHhhHHHHHHHH
Confidence 99999778888765555443
No 149
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=62.10 E-value=52 Score=34.95 Aligned_cols=100 Identities=14% Similarity=0.265 Sum_probs=66.7
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCC-------C----CCCCHH
Q 007601 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-------M----PDMDGF 95 (596)
Q Consensus 33 girVLIVD----Dd~~i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~-------M----PdmdGl 95 (596)
+..++++| +.....+.++.+-+.++..|. .+.+.++|..+++. ..|.|.+-+. - .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 46788875 234445556555554455544 68899998887754 4898887321 0 012346
Q ss_pred HHHHHHhc---cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 96 KLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 96 eLl~~Ir~---~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+++..+.. ..++|||.--+-.+...+.+++.+||+....=
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 66666642 35799999888888999999999999987653
No 150
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=61.75 E-value=55 Score=37.74 Aligned_cols=118 Identities=10% Similarity=-0.017 Sum_probs=78.3
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 007601 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (596)
Q Consensus 32 ~girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a---~sg~eALe~L~e~~~~pDLVLlDI~MPd-m-dGleLl~~Ir 102 (596)
...||++. |.+..=...+..+|+..||+|..- .+.++.++...+.. +|+|.+-..|.. + ..-++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHH
Confidence 34678876 555666677788889899999743 35788888887764 999998877753 2 2345666675
Q ss_pred cc-C-CCCEEEEcC-CCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 103 LE-M-DLPVIMMSA-DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 103 ~~-~-~ipVIllTa-~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+. . +++ |++-+ -... ....+.+.|++.|+..--+..+....+...+.+.
T Consensus 681 ~~G~~dv~-VivGG~~P~~-d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 681 SLGRPDIL-VMCGGVIPPQ-DYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp HTTCTTSE-EEEEESCCGG-GHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCE-EEEeCCCCcc-cHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 32 2 433 34443 2222 2334568999999986667888777777766544
No 151
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=61.51 E-value=41 Score=38.52 Aligned_cols=118 Identities=12% Similarity=-0.003 Sum_probs=77.0
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 007601 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (596)
Q Consensus 32 ~girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a---~sg~eALe~L~e~~~~pDLVLlDI~MPd-m-dGleLl~~Ir 102 (596)
...||++. |.|..=...+..+|+..||+|..- ...++.++...+.. +|+|.+-..|.. + ..-++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHH
Confidence 34678876 666666677778888889999753 35688888887764 999999887753 2 2345666775
Q ss_pred cc-C-CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 103 LE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 103 ~~-~-~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+. . +++ |++-+-.-......+.+.|++.|+.---+..++...+...+++
T Consensus 673 ~~G~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 673 KLGRPDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HTTCTTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hcCCCCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 42 2 433 3444322222233456899999998666777777666665543
No 152
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=61.17 E-value=2.3 Score=40.95 Aligned_cols=39 Identities=10% Similarity=-0.024 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCc
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGR 306 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGK 306 (596)
.....|..||..++..| +...|. ..+.+..|+.|||||+
T Consensus 32 ~h~~~H~~rV~~~a~~l---a~~~~~---d~~~l~~AaLLHDIg~ 70 (220)
T 2pq7_A 32 AHDISHTFRVMENASEI---ASREKC---DLQKAIIAALLHDIKR 70 (220)
T ss_dssp TTSHHHHHHHHHHHHHH---HHHHTC---CHHHHHHHHHHTTTTH
T ss_pred chhHHHHHHHHHHHHHH---HHHcCC---CHHHHHHHHHHHcCCC
Confidence 34679999999999999 777764 3457788999999976
No 153
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=61.00 E-value=34 Score=38.87 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=75.3
Q ss_pred ccEEEEE----eCCHHHHHH----HHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHH-H
Q 007601 33 GLRVLVV----DDDITCLRI----LEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD----MDGF-K 96 (596)
Q Consensus 33 girVLIV----DDd~~i~~~----L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPd----mdGl-e 96 (596)
+.||++. |-+..=... +..+|+..||+|.- ....++.++.+.+.. +|+|.+-..|.. +..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 4688887 444443332 25678888999963 346888888888764 999999988875 3333 3
Q ss_pred HHHHHhcc-C--CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHhh
Q 007601 97 LLEHIGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 97 Ll~~Ir~~-~--~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk~ 153 (596)
+++.+++. . .++|++=-+....+. +-+.||+.|........++...+...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 55556532 2 355555333334433 348899988887777777777666666544
No 154
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=60.81 E-value=3 Score=44.01 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcce
Q 007601 265 ASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD 308 (596)
Q Consensus 265 aSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~ 308 (596)
-.|..+|...++.+ +...|++++ +.+..|+-|||||+.-
T Consensus 52 ~~Hsl~V~~~a~~i---a~~~~~~~~--~~~~~AaLLHDiG~~p 90 (371)
T 2hek_A 52 FEHSLGVYHITERI---CESLKVKEK--ELVKLAGLLHDLGHPP 90 (371)
T ss_dssp HHHHHHHHHHHHHH---HHHHTCTTH--HHHHHHHHTTTTTCCS
T ss_pred hHHHHHHHHHHHHH---HHHcCCCHH--HHHHHHHHHHhcCccc
Confidence 47999999999999 888888875 6777889999999975
No 155
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=60.65 E-value=16 Score=33.29 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=32.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRR--CLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~--~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI 87 (596)
.|.||++||-|+.. .+..++.. .++.+..+.. ....+.+......+|+||+|.
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 46799999998643 33344432 2466665554 334444444444699999996
No 156
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=59.34 E-value=3 Score=39.97 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcce
Q 007601 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD 308 (596)
Q Consensus 263 ~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~ 308 (596)
..-.|+.||...+..| +...+.+ .+.+..|+-|||||+..
T Consensus 25 H~~~H~~rV~~~a~~i---a~~~~~d---~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 25 HDWSHIKRVWKLSKEI---QSKEGGD---LFTIELAALFHDYSDIK 64 (209)
T ss_dssp CCHHHHHHHHHHHHHH---HHHHCSC---HHHHHHHHHHTTCCC--
T ss_pred cCHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHhccCccc
Confidence 3578999999999999 7666643 45778899999999974
No 157
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=58.75 E-value=1.8 Score=42.39 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 263 ~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
..-.|+.||..++..| +...+.+ .+.+..|+.||||||.
T Consensus 30 H~~~H~~rV~~~a~~i---a~~~~~d---~~ll~lAAlLHDigk~ 68 (231)
T 2pjq_A 30 HGRDHLQRVNRLARRL---AKDEGAN---LNLTLAAAWLHDVIDD 68 (231)
T ss_dssp CSHHHHHHHHHHHHHH---HHHHTCC---HHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHHcCCcc
Confidence 3568999999999999 7766653 4677889999999984
No 158
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=58.67 E-value=3.2 Score=40.67 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 263 ~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
..-.|+.||...+..| +...|.+ .+.+..|+-|||||+.
T Consensus 25 H~~~H~~rV~~~a~~i---a~~~~~d---~~~l~~AalLHDig~~ 63 (223)
T 3dto_A 25 HDWYHIRRVTLMAKAI---GEQEKVD---VFVVQIAALFHDLIDD 63 (223)
T ss_dssp -CHHHHHHHHHHHHHH---HHHTTCC---HHHHHHHHHHHSTTC-
T ss_pred CcHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHhhcccc
Confidence 4668999999999999 7766644 4677889999999996
No 159
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=57.67 E-value=91 Score=31.17 Aligned_cols=115 Identities=11% Similarity=0.052 Sum_probs=74.8
Q ss_pred CccEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC----
Q 007601 32 AGLRVLVV----DDDITCLRILEQM--------LRRC-LYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD---- 91 (596)
Q Consensus 32 ~girVLIV----DDd~~i~~~L~~l--------L~~~-~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPd---- 91 (596)
...+|++. |-+..=...+..+ |+.. +|+|.. .-..++.++.+.+.. +|+|.+-..|..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccch
Confidence 45677665 6667777777777 8999 999864 446778888887764 999999998864
Q ss_pred CCH-HHHHHHHhcc---CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 92 MDG-FKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 92 mdG-leLl~~Ir~~---~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
+.. -++++.+++. .+++|++=-+.-+. .-+.+.|++.|..--....++...+...+.
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~---~~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINN---EIAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCH---HHHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCH---HHHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 222 2345555432 23565543332333 235578998888766777777666655443
No 160
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=57.55 E-value=52 Score=30.92 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=46.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC--------CCCHHHHHHHHhccCC-CCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHMP--------DMDGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~MP--------dmdGleLl~~Ir~~~~-ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
.+.+..++.+... . .+|.|++....+ ...|++.+++++.... +||++.-+-. .+.+.++++.|++.+
T Consensus 122 s~~t~~e~~~a~~-~--g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEE-D--GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHH-H--TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHh-C--CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 4678877655543 3 389988632222 1236888888865445 8999877766 666777888999887
Q ss_pred Ee
Q 007601 133 LI 134 (596)
Q Consensus 133 L~ 134 (596)
..
T Consensus 198 ~v 199 (227)
T 2tps_A 198 SM 199 (227)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 161
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.30 E-value=27 Score=29.92 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=25.4
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh
Q 007601 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE 75 (596)
Q Consensus 37 LIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e 75 (596)
|+-|.|+.-++.+++-++..||+|..+++.++|+.+.++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 334555555666666666667777777777777776654
No 162
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=56.60 E-value=3.8 Score=40.56 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 264 VASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 264 taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
.-.|+.||..++..| +...|. ..+.+..|+-||||||.
T Consensus 26 ~~~H~~rV~~~a~~i---a~~~~~---d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 26 DVCHFRRVWATAQKL---AADDDV---DMLVILTACYFHDIVSL 63 (239)
T ss_dssp -CCHHHHHHHHHHHH---TTTSCS---CTTHHHHHHHHTTTTC-
T ss_pred cHHHHHHHHHHHHHH---HHHcCC---CHHHHHHHHHHhhcccc
Confidence 357999999999999 776663 35678889999999996
No 163
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=56.32 E-value=62 Score=33.68 Aligned_cols=100 Identities=14% Similarity=0.262 Sum_probs=64.4
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCC-----------CCCCHH
Q 007601 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM-----------PDMDGF 95 (596)
Q Consensus 33 girVLIVD----Dd~~i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~M-----------PdmdGl 95 (596)
+..++++| +...+.+.++.+-+..+..|. .+.+.++|..+++. ..|.|.+-+.- .+...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 45566664 334455666665555455443 67888888777653 37888873210 012345
Q ss_pred HHHHHHh---ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 96 KLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 96 eLl~~Ir---~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+++..+. ...++|||.--+-.+...+.+++.+||+....=
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5555553 234799998888888899999999999987653
No 164
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=56.11 E-value=1.1e+02 Score=30.59 Aligned_cols=98 Identities=10% Similarity=0.073 Sum_probs=61.1
Q ss_pred HHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCCEEEEcCCCCHHHHHHH
Q 007601 49 LEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (596)
Q Consensus 49 L~~lL~~~~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir--~~~~ipVIllTa~~d~~~~~eA 124 (596)
++..|+.-...+ ..-.+..+.++.+... .+|.|++|.+=...+--.+...++ .....++++.+...+...+..+
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ 107 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQL 107 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHH
Confidence 555665422133 3223344455655544 499999998644344334444443 2346789999998888888899
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHH
Q 007601 125 IRHGACDYLI-KPIREEELKNIWQH 148 (596)
Q Consensus 125 l~~GA~DYL~-KPl~~eeL~~~l~~ 148 (596)
++.|++..+. |--+.++++.+++.
T Consensus 108 ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 108 LDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999986544 22478887766554
No 165
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=55.82 E-value=1.3e+02 Score=29.74 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=60.3
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCCEEEEcCCCCHHHHHHH
Q 007601 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (596)
Q Consensus 49 L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir--~~~~ipVIllTa~~d~~~~~eA 124 (596)
++..|+.-. +.+.......+.++.+... .+|.|++|.+=.-.+--++...++ .....++++.+...+...+..+
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~ 86 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 555555422 2333333344555655544 499999998543334334444443 2245778998888888888889
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHH
Q 007601 125 IRHGACDYLI-KPIREEELKNIWQH 148 (596)
Q Consensus 125 l~~GA~DYL~-KPl~~eeL~~~l~~ 148 (596)
++.|++..+. |--+.++++.+++.
T Consensus 87 l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 87 LDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999986544 22578887766554
No 166
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=55.76 E-value=51 Score=32.88 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=64.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~--~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
.++++|+.+.+. +.++..+++. ...+.-.-+..+..+++.. .|++++-..-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 456666655544 4444444432 1222223344444555543 47777643212333666777763 356777
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.. .. ....+.+..|..+|+.+|-+.++|..++..++.
T Consensus 312 ~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 312 AS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp EC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred Ee-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 52 22 345677788889999999999999999998875
No 167
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=55.05 E-value=88 Score=30.95 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=63.5
Q ss_pred HHHHHHhCCCeE--EEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCCEEEEcCCCCHHHHHH
Q 007601 49 LEQMLRRCLYNV--TTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (596)
Q Consensus 49 L~~lL~~~~y~V--~~a~-sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~--~~~ipVIllTa~~d~~~~~e 123 (596)
++..|..-...+ .... +..+.++.+... .+|.|++|++=.-.+--++...++. ....++++.-...+...+..
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 455565432222 2333 445566666654 4999999997654554445555532 23567788777778888889
Q ss_pred HHHcCCCeEEeC-CCCHHHHHHHHHHH
Q 007601 124 GIRHGACDYLIK-PIREEELKNIWQHV 149 (596)
Q Consensus 124 Al~~GA~DYL~K-Pl~~eeL~~~l~~v 149 (596)
+++.|++..+.- --+.+++..++..+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 999999876543 35788888776654
No 168
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=54.83 E-value=93 Score=31.61 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=58.5
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCC-------------------------CCC----------CCHHHHHHHHhccC
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVH-------------------------MPD----------MDGFKLLEHIGLEM 105 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~-------------------------MPd----------mdGleLl~~Ir~~~ 105 (596)
..+.+..|++..+... .|+|.+.-. |++ ...++++++++...
T Consensus 130 v~v~~~~Ea~~a~~~G---ad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~ 206 (297)
T 4adt_A 130 CGCTNLGEALRRISEG---ASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLK 206 (297)
T ss_dssp EEESSHHHHHHHHHHT---CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHT
T ss_pred EEeCCHHHHHHHHhCC---CCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhc
Confidence 3577788887776542 677776632 111 12367777776656
Q ss_pred CCCEE--EEcCCCCHHHHHHHHHcCCCeEEe-----CCCCHHHHHHHHHHHHHhh
Q 007601 106 DLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRKR 153 (596)
Q Consensus 106 ~ipVI--llTa~~d~~~~~eAl~~GA~DYL~-----KPl~~eeL~~~l~~vlrk~ 153 (596)
.+||| .-.+-...+.+.+++..||+.++. |.-++.+....+...+..+
T Consensus 207 ~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~ 261 (297)
T 4adt_A 207 RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNF 261 (297)
T ss_dssp SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTT
T ss_pred CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhh
Confidence 67887 456666889999999999999876 3335555555555555443
No 169
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=54.76 E-value=1e+02 Score=31.07 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=56.0
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHH
Q 007601 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (596)
Q Consensus 53 L~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-------mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eA 124 (596)
++..+..+. .+.+.+++...... ..|.|+++-.-++ ...++++++++...++|||+-.+-.+.+.+.++
T Consensus 114 l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~a 190 (328)
T 2gjl_A 114 FRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAA 190 (328)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHH
T ss_pred HHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 333344443 56777777765543 3798888532221 256788888876668999999888888889999
Q ss_pred HHcCCCeEEe
Q 007601 125 IRHGACDYLI 134 (596)
Q Consensus 125 l~~GA~DYL~ 134 (596)
+..||+....
T Consensus 191 l~~GAdgV~v 200 (328)
T 2gjl_A 191 LALGADAINM 200 (328)
T ss_dssp HHHTCSEEEE
T ss_pred HHcCCCEEEE
Confidence 9999988755
No 170
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=51.72 E-value=1.3e+02 Score=30.12 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=70.8
Q ss_pred CccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEE-C--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 007601 32 AGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTC-S--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (596)
Q Consensus 32 ~girVLIVDDd-~~i~~~L~~lL~~~~y~V~~a-~--sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i 107 (596)
..++++|+-+. ....+.++.+.++.+ ++..+ . +.++..+.+.. .|++++-... +.-|+.+++.+. ..+
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma--~G~ 355 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGA 355 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH--TTC
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH--CCC
Confidence 45778888654 444567777777766 44433 2 45555555532 6887765544 444677777774 467
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|||.- ..+ ...+.++.| .+++..|-+.++|..++..++.
T Consensus 356 Pvi~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 356 IPIAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CeEEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 88763 322 244555567 9999999999999999998886
No 171
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=51.46 E-value=3.8 Score=40.07 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 263 NVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 263 ~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
.--.|+.||...+..| +...+.+ .+.+..|+-|||||+.
T Consensus 25 H~~~H~~rV~~~a~~i---a~~~~~d---~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 25 HDWYHIRRVHKMAISL---SEQEGGN---RFIIEMAALLHDVADE 63 (223)
T ss_dssp TTHHHHHHHHHHHHHH---HTTTCSC---HHHHHHHHTTHHHHC-
T ss_pred CcHHHHHHHHHHHHHH---HHHcCCC---HHHHHHHHHHhhcccc
Confidence 4578999999999999 7665543 5678889999999995
No 172
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=50.19 E-value=1.4e+02 Score=26.55 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=70.3
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 007601 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (596)
Q Consensus 33 girVLIVDDd~-~i~~~L~~lL~~~~y~V~~---a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ip 108 (596)
.++++|+-+.+ ...+.++.+++..+ .|.. .-+.++..+++. ..|++++-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 57888886643 35667777777765 4443 334456666553 26888875443 334677777774 4678
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
||.. .. ....+.+ .|..+++..|-+.++|...+..++.
T Consensus 142 vI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7753 22 2344555 7888999999999999999988875
No 173
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=50.06 E-value=1.2e+02 Score=28.76 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC------C
Q 007601 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK------P 136 (596)
Q Consensus 67 ~eALe~L~e~~~~pD-LVLlDI~MPd-mdG--leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K------P 136 (596)
.+..+.+.+.. ++ +++.++.-.+ ..| ++++++++....+|||...+-...+.+.++++.||++.+.= |
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44444444432 56 5556654221 122 88999998767899999999888888999999999987653 4
Q ss_pred CCHHHHHHHH
Q 007601 137 IREEELKNIW 146 (596)
Q Consensus 137 l~~eeL~~~l 146 (596)
++..++++.+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5666665543
No 174
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=49.38 E-value=17 Score=36.66 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHHHHHHhcc-CCCCEEEEcCC------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHH
Q 007601 94 GFKLLEHIGLE-MDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (596)
Q Consensus 94 GleLl~~Ir~~-~~ipVIllTa~------~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~ 148 (596)
.+++++++|.. .++|||+|+-. +-.....++.+.|+++.+.-.+..++.......
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 36677788765 78999998732 334557788899999999977888875544443
No 175
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=48.71 E-value=1.7e+02 Score=28.73 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=39.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 80 pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.|+++++- |.-+++.+. ..+|||.....+.. .+.++.| .+++..+ +.++|.+++..++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 57776643 444556553 46788875322332 3446778 8999877 99999999998875
No 176
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=48.51 E-value=86 Score=30.27 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCceEEE-EeCCC----CCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 66 AAVALDILRERKGCFDVVL-SDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 66 g~eALe~L~e~~~~pDLVL-lDI~M----PdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
..+..+.+.+.. ++.|+ .++.- .+. .++++++++...++|||...+-...+.+.++++.||++.+.=
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCC-CHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 445445454433 66555 45432 222 288999998777899999999999899999999999998664
No 177
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=47.80 E-value=6.1 Score=38.00 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhh----hhc--CCCccccccccccccccCcCccee
Q 007601 258 GLTRENVASHLQKFRLYLKRLNGVS----QQG--GITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 258 gltre~taSHLqRvr~y~k~L~~~A----~~~--Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
+...++|+.|.-+|+.++..+ | ... +++. +.+..++-+||+|++-+
T Consensus 26 ~~~~EnVaeHS~~VA~lA~~l---a~~~~~~~~~~vD~---~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 26 NVRTENVSEHSLQVAMVAHAL---AAIKNRKFGGNVNA---ERIALLAMYHDASEVLT 77 (201)
T ss_dssp CSSCCBHHHHHHHHHHHHHHH---HHHHHHHSCCCCCH---HHHHHHHHHTTTTHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHH---HhhhHHhcCcccCH---HHHHHHHHhcccccccC
Confidence 345678999999999999988 5 344 3443 45555678999999976
No 178
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=47.73 E-value=27 Score=34.14 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=45.4
Q ss_pred CceEEEEeCCCCC--CC--------------------HHHHHHHHhccCCCCEEEEcCCCCHH---HHHHHHHcCCCeEE
Q 007601 79 CFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEMDLPVIMMSADGRVS---AVMRGIRHGACDYL 133 (596)
Q Consensus 79 ~pDLVLlDI~MPd--md--------------------GleLl~~Ir~~~~ipVIllTa~~d~~---~~~eAl~~GA~DYL 133 (596)
..|+|-+++-..+ +| ++++++++|...++|+++++- .+.. ....+.+.||++++
T Consensus 45 Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv~ 123 (262)
T 1rd5_A 45 GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSY-YKPIMFRSLAKMKEAGVHGLI 123 (262)
T ss_dssp TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECC-SHHHHSCCTHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEec-CcHHHHHHHHHHHHcCCCEEE
Confidence 4888888874432 23 567788888777899998852 2221 12347899999999
Q ss_pred eCCCCHHHHHHHHHH
Q 007601 134 IKPIREEELKNIWQH 148 (596)
Q Consensus 134 ~KPl~~eeL~~~l~~ 148 (596)
.-....+++...+..
T Consensus 124 v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 124 VPDLPYVAAHSLWSE 138 (262)
T ss_dssp CTTCBTTTHHHHHHH
T ss_pred EcCCChhhHHHHHHH
Confidence 866666665555544
No 179
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=47.66 E-value=4.3 Score=40.71 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=45.7
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHhcCCCceEEEEeCCCC-CCC--HHHHHHH-Hhcc
Q 007601 33 GLRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAV--ALDILRERKGCFDVVLSDVHMP-DMD--GFKLLEH-IGLE 104 (596)
Q Consensus 33 girVLIVDDd--~~i~~~L~~lL~~~~y~V~~a~sg~e--ALe~L~e~~~~pDLVLlDI~MP-dmd--GleLl~~-Ir~~ 104 (596)
+.|||||+++ +.....+...|+..+|+|.......- -.+.|. .+|+||++-... ..+ -++.++. ++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d~~~~~l~~~~~~~L~~yV~-- 77 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSDYPAERMTAQAIDQLVTMVK-- 77 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEESCCGGGBCHHHHHHHHHHHH--
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcCCccccCCHHHHHHHHHHHH--
Confidence 4589999988 67778899999998998876553321 112332 389998863222 222 2333332 33
Q ss_pred CCCCEEEEcCC
Q 007601 105 MDLPVIMMSAD 115 (596)
Q Consensus 105 ~~ipVIllTa~ 115 (596)
..--+|++.+.
T Consensus 78 ~GGgLi~~gG~ 88 (259)
T 3rht_A 78 AGCGLVMLGGW 88 (259)
T ss_dssp TTCEEEEECST
T ss_pred hCCeEEEecCc
Confidence 24557777554
No 180
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=47.04 E-value=1.5e+02 Score=30.48 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCC---------CC-------CCHHHHHHHHhccCCCCEEEEcCCCCHH
Q 007601 57 LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM---------PD-------MDGFKLLEHIGLEMDLPVIMMSADGRVS 119 (596)
Q Consensus 57 ~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~M---------Pd-------mdGleLl~~Ir~~~~ipVIllTa~~d~~ 119 (596)
+..| ..+.+.+++....+. .+|.|+++-.- ++ .+.++++++++...++|||..-+-.+.+
T Consensus 145 g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~ 221 (369)
T 3bw2_A 145 GTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGG 221 (369)
T ss_dssp TCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHH
T ss_pred CCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHH
Confidence 4444 367788877655542 48999885411 10 2348889998766689999988888889
Q ss_pred HHHHHHHcCCCeEEe
Q 007601 120 AVMRGIRHGACDYLI 134 (596)
Q Consensus 120 ~~~eAl~~GA~DYL~ 134 (596)
.+.+++..||+....
T Consensus 222 ~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 222 QIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999987654
No 181
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=46.78 E-value=1.2e+02 Score=30.63 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=57.2
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-C----CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHH
Q 007601 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-D----MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR 126 (596)
Q Consensus 53 L~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP-d----mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~ 126 (596)
++..+..|. .+.+.+++..+.+. .+|.|+++-.-. + ...++++..++...++|||.-.+-.+.+.+.+++.
T Consensus 120 l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~ 196 (326)
T 3bo9_A 120 LKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA 196 (326)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 333444444 56788887765543 378888864222 2 35688888887656899999999988999999999
Q ss_pred cCCCeEEeC
Q 007601 127 HGACDYLIK 135 (596)
Q Consensus 127 ~GA~DYL~K 135 (596)
.||+....=
T Consensus 197 ~GA~gV~vG 205 (326)
T 3bo9_A 197 LGAEAVQMG 205 (326)
T ss_dssp HTCSEEEES
T ss_pred hCCCEEEec
Confidence 999987653
No 182
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=45.89 E-value=1e+02 Score=29.40 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=48.8
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVLlDI~MPdmd---GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+..+..+.+.+.. .| |.+.|....... -+++++++++..++|||+.....+.+.+.++++.||+..+.=
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 4555555555443 45 456676543222 256677887767899999999999999999999998887663
No 183
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=45.62 E-value=1e+02 Score=28.63 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=58.3
Q ss_pred HHHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccC--CCCEEEEcCCCCHHHHHHHHHc
Q 007601 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRH 127 (596)
Q Consensus 52 lL~~~~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MP-dmdGleLl~~Ir~~~--~ipVIllTa~~d~~~~~eAl~~ 127 (596)
..+..+..+ ..+.+..++.+..+. .+|.|++ .| +..|++.+++++... ++||+...+-. .+.+.++++.
T Consensus 96 ~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~ 168 (212)
T 2v82_A 96 RAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDA 168 (212)
T ss_dssp HHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHH
T ss_pred HHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHc
Confidence 344445442 247888888766542 4898886 22 223678888886443 58999888776 6677888899
Q ss_pred CCCeEEeCC-C-CH----HHHHHHHHHH
Q 007601 128 GACDYLIKP-I-RE----EELKNIWQHV 149 (596)
Q Consensus 128 GA~DYL~KP-l-~~----eeL~~~l~~v 149 (596)
||+.+..=. + .. ++....++.+
T Consensus 169 Ga~gv~vGsai~~~~~~~~d~~~~~~~l 196 (212)
T 2v82_A 169 GCAGAGLGSDLYRAGQSVERTAQQAAAF 196 (212)
T ss_dssp TCSEEEECTTTCCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEChHHhCCCCCHHHHHHHHHHH
Confidence 999987543 2 22 4555555444
No 184
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=45.00 E-value=1e+02 Score=28.78 Aligned_cols=86 Identities=14% Similarity=0.155 Sum_probs=56.3
Q ss_pred HHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCC-----CCC----CCHHHHHHHHhccCCCCEEEEcCC
Q 007601 47 RILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-----MPD----MDGFKLLEHIGLEMDLPVIMMSAD 115 (596)
Q Consensus 47 ~~L~~lL~~~-~y~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~-----MPd----mdGleLl~~Ir~~~~ipVIllTa~ 115 (596)
+.++.+-+.+ +..+ ..+.+.+++.++.+. ..|+|.+-.. ..+ ..+++++++++..-++|||...+-
T Consensus 108 ~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI 184 (223)
T 1y0e_A 108 ELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNV 184 (223)
T ss_dssp HHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCC
Confidence 3344433332 4443 467778887765432 3788764321 011 124667888875567999999888
Q ss_pred CCHHHHHHHHHcCCCeEEeC
Q 007601 116 GRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 116 ~d~~~~~eAl~~GA~DYL~K 135 (596)
.+.+.+.++++.||+.++.=
T Consensus 185 ~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 185 ITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 89999999999999988764
No 185
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=44.48 E-value=1.7e+02 Score=31.75 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=66.7
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCC-----------CC
Q 007601 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (596)
Q Consensus 32 ~girVLIVDD----d~~i~~~L~~lL~~~~-y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd-----------md 93 (596)
.+..++++|. ...+.+.++.+-+.+. ..+ ..+.+.++|..+.+. ..|.|.+.+.--. ..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCC
Confidence 3567888873 3445555666555543 333 367788888877764 3788887432111 22
Q ss_pred HHHHHHHHh---ccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 94 GleLl~~Ir---~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.++++..+. ....+|||.--+-.....+.+|+.+||+....=
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 355555542 234699999888889999999999999987664
No 186
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=43.61 E-value=1.9e+02 Score=28.21 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=59.5
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCCEEEEcCCCCHHHHHHH
Q 007601 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (596)
Q Consensus 49 L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir--~~~~ipVIllTa~~d~~~~~eA 124 (596)
++..|+.-. +......+..+.++.+... .+|.|++|..=...+--++...++ .....++++.+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 555555422 2233333444555655543 499999998543222222333332 2345789999998898888889
Q ss_pred HHcCCCeEEe-CCCCHHHHHHHHHH
Q 007601 125 IRHGACDYLI-KPIREEELKNIWQH 148 (596)
Q Consensus 125 l~~GA~DYL~-KPl~~eeL~~~l~~ 148 (596)
++.|+++.+. |--+.++++.+++.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 9999987544 33578888665543
No 187
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=43.59 E-value=1.5e+02 Score=30.06 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCC
Q 007601 56 CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGA 129 (596)
Q Consensus 56 ~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MP-----dmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA 129 (596)
.++.+. .+.+.+++..+.+ . .+|.|+++-.-. ....++++++++...++|||.-.+-.+.+.+.+++..||
T Consensus 109 ~g~~v~~~v~~~~~a~~~~~-~--GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GA 185 (332)
T 2z6i_A 109 AGIIVIPVVPSVALAKRMEK-I--GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGA 185 (332)
T ss_dssp TTCEEEEEESSHHHHHHHHH-T--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTC
T ss_pred cCCeEEEEeCCHHHHHHHHH-c--CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCC
Confidence 345444 5677777655543 2 389888863211 234688889887666899999999888999999999999
Q ss_pred CeEEe
Q 007601 130 CDYLI 134 (596)
Q Consensus 130 ~DYL~ 134 (596)
+....
T Consensus 186 dgV~v 190 (332)
T 2z6i_A 186 EAVQV 190 (332)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 87644
No 188
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=43.41 E-value=45 Score=32.21 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC---CC-CC-CCHHHHHHHHhccCCCCEE--EEcCCCCHHHHHHHHHcCCCeEEeCCC
Q 007601 65 QAAVALDILRERKGCFDVVLSDV---HM-PD-MDGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIKPI 137 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI---~M-Pd-mdGleLl~~Ir~~~~ipVI--llTa~~d~~~~~eAl~~GA~DYL~KPl 137 (596)
+-.+.++.+.+. ..|++=+|+ +. |. ..|+++++.||...+.|+. +++..+ ..++..+.+.||+....-..
T Consensus 18 ~l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp-~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCH-HHHHHHHHHcCCCEEEECcc
Confidence 445566666543 366666665 22 33 2478999999865566766 777543 34577888999998866554
Q ss_pred --CHHHHHHHHHHH
Q 007601 138 --REEELKNIWQHV 149 (596)
Q Consensus 138 --~~eeL~~~l~~v 149 (596)
..++....++.+
T Consensus 95 ~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 95 HNASPHLHRTLCQI 108 (230)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 444555555554
No 189
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=43.31 E-value=1.9e+02 Score=27.38 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCC-CC--HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC------
Q 007601 66 AAVALDILRERKGCFD-VVLSDVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK------ 135 (596)
Q Consensus 66 g~eALe~L~e~~~~pD-LVLlDI~MPd-md--GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K------ 135 (596)
..+..+.+.+. .++ ++++++.-.+ .. .++++++++...++|||.-.+-...+.+.++++.||+..+.=
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 44544545443 367 4556664222 12 288999998666899999998888889999999999987653
Q ss_pred CCCHHHHHHH
Q 007601 136 PIREEELKNI 145 (596)
Q Consensus 136 Pl~~eeL~~~ 145 (596)
|+++.+++..
T Consensus 231 ~~~~~~~~~~ 240 (253)
T 1thf_D 231 EIDVRELKEY 240 (253)
T ss_dssp CSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3455554443
No 190
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=43.31 E-value=27 Score=34.96 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhc-CCCceEEEEeCCCCC--CC--------------------HHHHHHHHhccCCCCEEEEcCCC-----
Q 007601 65 QAAVALDILRER-KGCFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEMDLPVIMMSADG----- 116 (596)
Q Consensus 65 sg~eALe~L~e~-~~~pDLVLlDI~MPd--md--------------------GleLl~~Ir~~~~ipVIllTa~~----- 116 (596)
+.+..++.++.- .. .|+|.+++-..| .| .+++++++|...++|||+|+-.+
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~ 106 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAW 106 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHh
Confidence 334444444321 23 888888875432 22 35678888766789999984222
Q ss_pred -CHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHH
Q 007601 117 -RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (596)
Q Consensus 117 -d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~v 149 (596)
......++.+.|+++++.-.+..+++...+..+
T Consensus 107 g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 107 GPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp CHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 133456677999999999778777766555444
No 191
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=43.20 E-value=71 Score=31.59 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=32.3
Q ss_pred HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 95 leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
++++++++...++|||..-+-.+.+.+.+++..||+...
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 477888876668999998888889999999999988753
No 192
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=42.79 E-value=97 Score=29.87 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=49.5
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVLlDI~MPdm---dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
+..+..+.+.+.. .| |.+.|....+. .-+++++++++...+|||+..+..+.+.+.++++.||+..++=.
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 4555555555543 55 55567654321 12788999987778999998888888888899999999877643
No 193
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=42.59 E-value=72 Score=32.49 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCCCCEEEE--cCCCCHHHHHHHHHcCCCeEEeC-----CCCHHHHHHHHHHHHHhhcc
Q 007601 94 GFKLLEHIGLEMDLPVIMM--SADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRKRWN 155 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIll--Ta~~d~~~~~eAl~~GA~DYL~K-----Pl~~eeL~~~l~~vlrk~~~ 155 (596)
.+++++++++...+|||++ .+-...+.+.+++..|+++.+.= --++......+..++..+.+
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~~~ 254 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHFDN 254 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhccC
Confidence 4788888877788999887 44457888999999999998664 33577887778777766533
No 194
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=42.40 E-value=1.7e+02 Score=25.87 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=67.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--h--C--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 007601 33 GLRVLVVDDDITCLRILEQMLR--R--C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~--~--~--~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ 106 (596)
.++++|+-+.+.. ..++..++ . . ...+.-.-+.++..+++.. .|++++-.. .+.-|+.+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4677777654321 22333333 2 1 3444455566667777764 577776333 3334677777774 56
Q ss_pred CCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHHh
Q 007601 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (596)
Q Consensus 107 ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlrk 152 (596)
+|||... .....+.+..|..+++. +-+.++|..++..++..
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 7888642 23455666778889999 99999999999988753
No 195
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=41.57 E-value=47 Score=33.70 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=48.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHH
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHI 101 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MP-dmdGleLl~~I 101 (596)
+-++.+||-++...+.|++.++...-.-+...|+.+++..+......+||||+|-=-. ..+.-++++.|
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 4689999999999999988887643233456788888877654334599999996333 23444555555
No 196
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=41.20 E-value=1.2e+02 Score=28.31 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 64 SQAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 64 ~sg~eALe~L~e~~~~pD-LVLlDI~MPdm---dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
.+..+..+.+.+. .+| +.+.|...... ..+++++++++..++|+++-....+.+.+.++++.||+....
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3555666666554 377 55666543221 246778888766689999988888888888999999887764
No 197
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=40.68 E-value=43 Score=32.11 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=50.5
Q ss_pred HHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCce-EEEEeCCCCCCC---------HHHHHHHHhccCCCCEEEEcCC
Q 007601 49 LEQMLRRCLYNVTTCS---QAAVALDILRERKGCFD-VVLSDVHMPDMD---------GFKLLEHIGLEMDLPVIMMSAD 115 (596)
Q Consensus 49 L~~lL~~~~y~V~~a~---sg~eALe~L~e~~~~pD-LVLlDI~MPdmd---------GleLl~~Ir~~~~ipVIllTa~ 115 (596)
+.+.+++.+..+...- +..+.++.+... .| +|.+ +..++.. +++.+++++...++||++-.+-
T Consensus 125 ~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI 200 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGV 200 (248)
T ss_dssp HHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCC
T ss_pred HHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeec
Confidence 3444444454443222 445666655543 23 4433 2224322 4567777776557999988888
Q ss_pred CCHHHHHHHHHcCCCeEEeC
Q 007601 116 GRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 116 ~d~~~~~eAl~~GA~DYL~K 135 (596)
...+.+.++++.||+.++.=
T Consensus 201 ~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 201 SKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 88788888889999998875
No 198
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=40.63 E-value=2.3e+02 Score=29.14 Aligned_cols=101 Identities=9% Similarity=0.102 Sum_probs=64.1
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 007601 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (596)
Q Consensus 33 girVLIVD----Dd~~i~~~L~~lL~~~-~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd------------md 93 (596)
+..++.+| +.....+.++.+-+.. +..| ..+.+.++|..+.+. ..|.|.+... ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45566665 3344555666555554 4433 467888888877654 3898866431 21 12
Q ss_pred HHHHHHHHh---ccCCCCEEEEcCCCCHHHHHHHHHcCCCeE-EeCCC
Q 007601 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (596)
Q Consensus 94 GleLl~~Ir---~~~~ipVIllTa~~d~~~~~eAl~~GA~DY-L~KPl 137 (596)
-+.++..+. ...++|||.-.+-.+...+.+|+.+||+.. +-++|
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 234444442 224699999888899999999999999975 44554
No 199
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=40.58 E-value=1.7e+02 Score=27.35 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhcCCCceEEE-EeCCCCCC---CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 65 QAAVALDILRERKGCFDVVL-SDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVL-lDI~MPdm---dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
+..+.++.+.+.. .|.|+ .++.-.+. -.++.+++++...++|||.-.+-...+.+.++++.||+..+.
T Consensus 155 ~~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 155 DAVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 3445445554443 67665 45542211 146788888765689999988888878888999999998764
No 200
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.32 E-value=1.1e+02 Score=26.46 Aligned_cols=94 Identities=10% Similarity=0.105 Sum_probs=51.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCCE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~s-g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ipV 109 (596)
.+.+|.++|.++...+.++ ..++.+....- -.+.++.+.- ...|+||+-+.-. .+-..++..++. .+.++|
T Consensus 29 ~g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~~~~-~~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL--ECAKWLILTIPNG-YEAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TTCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG--GGCSEEEECCSCH-HHHHHHHHHHHHHCSSSEE
T ss_pred CCCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc--ccCCEEEEECCCh-HHHHHHHHHHHHHCCCCeE
Confidence 3567999999987665443 34666543221 2233333211 2478888754221 122334444543 567788
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
|..... .+......+.|++..+.
T Consensus 102 iar~~~--~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 102 IARAHY--DDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEESS--HHHHHHHHHTTCSEEEE
T ss_pred EEEECC--HHHHHHHHHCCCCEEEC
Confidence 876643 34455556789876554
No 201
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=40.10 E-value=1.8e+02 Score=24.98 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=47.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhc--CCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~--~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
.+||.|+-| +....+ ++-.|.++..+++.+++.+.+++. .+++.+|+++-++-+. --+.+++++.....|+|
T Consensus 3 ~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 468999999 433322 233477888888888776665531 2369999998877653 23455556545567877
Q ss_pred EE
Q 007601 111 MM 112 (596)
Q Consensus 111 ll 112 (596)
+.
T Consensus 77 l~ 78 (109)
T 2d00_A 77 LP 78 (109)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 202
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=39.58 E-value=1.2e+02 Score=28.80 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=43.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVH 88 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y--~V~-~a~sg~eALe~L~e~---~~~pDLVLlDI~ 88 (596)
+|.+.+|..||-++...+..+..++..++ .+. ...++.+.+..+... .+.||+|++|..
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 34457999999999999999999987765 243 566777766655321 235999999953
No 203
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=39.42 E-value=1.2e+02 Score=27.78 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=49.2
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHH
Q 007601 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 28 ~~fp~girVLIVDDd~~i~~~L~~lL~~~~y--~V-~~a~sg~eALe~L~e~~-~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
..+|.+.+|.-||-++...+..+..+...++ .+ ....+..+.+..+.... ..||+|++|...+ +-.++++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 3445567999999999999999999887654 23 35677777766554421 3599999996532 223455555
No 204
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=39.01 E-value=2.3e+02 Score=29.20 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=55.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCC
Q 007601 35 RVLVVDDDITCLRILEQMLR----RCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~----~~~y--~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I-r~~~~i 107 (596)
-|||-|.+-...-.+...++ .... ....+.+.+++.+.++. ..|+|.+|- ++- +.++++ +....-
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn----~~~-~~l~~av~~l~~~ 275 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDN----FSL-EMMREAVKINAGR 275 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEES----CCH-HHHHHHHHHHTTS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECC----CCH-HHHHHHHHHhCCC
Confidence 36777765433322333332 2222 24578899999888874 489999996 332 333333 322222
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
..|..|+--+.+.+.+..+.|++.+-
T Consensus 276 v~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 276 AALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp SEEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 45667888888888888899986553
No 205
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=38.35 E-value=1.5e+02 Score=30.86 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCC---------C--CCCHHHHHHHHh---ccC
Q 007601 43 ITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM---------P--DMDGFKLLEHIG---LEM 105 (596)
Q Consensus 43 ~~i~~~L~~lL~~~-~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~M---------P--dmdGleLl~~Ir---~~~ 105 (596)
....+.++.+-+.. +..|. .+.+.++|..+.+ . .+|.|.+-..- . +.-.++.+..++ ...
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~-~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS-V--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT-T--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh-c--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34455555444444 44444 5677777766553 2 48988882110 0 112355555553 235
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
++|||.-.+-.+.+.+.+++..||+....
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 79999988888899999999999988765
No 206
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=38.14 E-value=1.5e+02 Score=30.26 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=43.3
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
...+.+.+|+.+.++. ..|+|++|-. +--++-+.++....-..|..|+--..+.+.+..+.|++.+
T Consensus 211 eVEv~tl~e~~eAl~a---GaDiImLDn~----s~~~l~~av~~~~~~v~leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 211 AIECDNISQVEESLSN---NVDMILLDNM----SISEIKKAVDIVNGKSVLEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESC----CHHHHHHHHHHHTTSSEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHhhcCceEEEEECCCCHHHHHHHHHcCCCEE
Confidence 4578999999999875 3899999953 3222222232222234666788777777877778887644
No 207
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=37.89 E-value=1.7e+02 Score=29.73 Aligned_cols=65 Identities=12% Similarity=-0.011 Sum_probs=42.9
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
..+.+.+|+.+.++. ..|+|.+|- ++--++.+.++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn----~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDN----FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEES----CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 468899998888874 489999996 33233333333222223456777777777878778998544
No 208
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=37.84 E-value=2.3e+02 Score=30.46 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=66.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 007601 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (596)
Q Consensus 33 girVLIVD----Dd~~i~~~L~~lL~~~-~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd------------md 93 (596)
+..++++| +.+...+.++.+-+.+ +..| ..+.+.++|..+.+. ..|.|.+-+. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 45677776 4455666666666665 3333 347888888777653 3898887321 11 22
Q ss_pred HHHHHHHHhc---cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 94 GFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 94 GleLl~~Ir~---~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.++++..+.. ..++|||.--+-.....+.+++.+||+....=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 4555565532 34799999888889999999999999887654
No 209
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=37.66 E-value=2.3e+02 Score=29.22 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cC--CCCEEEEcCCCCHHHHHHHHHcCCCeEEe-CCC
Q 007601 64 SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EM--DLPVIMMSADGRVSAVMRGIRHGACDYLI-KPI 137 (596)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~---~~--~ipVIllTa~~d~~~~~eAl~~GA~DYL~-KPl 137 (596)
....+.++.+... .+|.|++|..=.-.+--.+.+.++. .. ..++++.+...+...+..+++.|++..+. |--
T Consensus 50 i~~p~~~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~ 127 (339)
T 1izc_A 50 IPSTFVTKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVE 127 (339)
T ss_dssp SCCHHHHHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCC
T ss_pred CCCHHHHHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC
Confidence 3344455555554 4999999986433333334444432 11 27899999888888898999999987544 224
Q ss_pred CHHHHHHHHHH
Q 007601 138 REEELKNIWQH 148 (596)
Q Consensus 138 ~~eeL~~~l~~ 148 (596)
+.+++..+...
T Consensus 128 saee~~~~~~~ 138 (339)
T 1izc_A 128 TVEEVREFVKE 138 (339)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 78888876655
No 210
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=37.54 E-value=88 Score=30.30 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=37.8
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhcc-CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 79 CFDVVLSDVHMPDMDG-------FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 79 ~pDLVLlDI~MPdmdG-------leLl~~Ir~~-~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.+|.|++.-..|+..| ++-++++|+. .+.+|. +.+--+.+.+.++.++||+-++.=
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~-VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIE-VDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEE-EESSCSTTTHHHHHHHTCCEEEES
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEE-EeCCcCHHHHHHHHHcCCCEEEEe
Confidence 3788888777787655 4445666543 345554 444456778889999999987653
No 211
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=37.46 E-value=3.7e+02 Score=27.91 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=60.4
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 007601 33 GLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (596)
Q Consensus 33 girVLIVDD----d~~i~~~L~~lL~~~-~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MPd------------md 93 (596)
+..++.+|- ...+.+.++.+-+.+ +..|. .+.+.++|..+.+. ..|.|.+.+. |+ ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 566888872 233333444333332 34443 47888888877754 4898888543 22 12
Q ss_pred HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
-++.+.++..... |||.--+-.+...+.+++..||+....
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444432222 899888888899999999999987655
No 212
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=37.31 E-value=2.6e+02 Score=29.97 Aligned_cols=99 Identities=16% Similarity=0.273 Sum_probs=63.7
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCC--------------CCC
Q 007601 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MPD 91 (596)
Q Consensus 33 girVLIVD----Dd~~i~~~L~~lL~~~-~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~--------------MPd 91 (596)
+..++.++ +.....+.++.+-+.+ +..|. .+.+.++|..+.+. ..|.|.+-.. +|.
T Consensus 267 G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~ 343 (514)
T 1jcn_A 267 GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQ 343 (514)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCH
T ss_pred CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccc
Confidence 44555552 2233445555555554 44443 47788888776654 3787777331 111
Q ss_pred CCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 92 MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 92 mdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
...+.++.+++...++|||.--+-.+...+.+++..||+....
T Consensus 344 ~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 344 GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 2246667777655689999988888899999999999987543
No 213
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=37.12 E-value=1.8e+02 Score=28.66 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=30.4
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 105 ~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
..+|||.....++. .+.++.| .+++..| +.++|.+++..++.
T Consensus 300 ~G~PvI~~~~~~~~---~e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTER---PEAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSC---HHHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCc---chhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 46899876432332 2335668 8999988 99999999998875
No 214
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=36.89 E-value=48 Score=31.32 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=49.4
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHhcc--CCCCEEEEcCCCCHHHHHHHHHcCCC
Q 007601 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGAC 130 (596)
Q Consensus 61 ~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdm--------dGleLl~~Ir~~--~~ipVIllTa~~d~~~~~eAl~~GA~ 130 (596)
..+.+.+|+.+.. . ..|.|+++-..|.. -|++.++.++.. ..+|||.+-+-. .+.+.++++.|++
T Consensus 93 ~s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 93 CSCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EEECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred EecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 4778888876653 2 48999987665421 267888888654 689999987765 5678889999998
Q ss_pred eEEe
Q 007601 131 DYLI 134 (596)
Q Consensus 131 DYL~ 134 (596)
+.-.
T Consensus 168 gVav 171 (210)
T 3ceu_A 168 GAVV 171 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8743
No 215
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=36.67 E-value=2.9e+02 Score=27.17 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=54.2
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 34 LRVLVV-DDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 34 irVLIV-DDd~~i~~~L~~lL~~~~y~V~~a~--sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
++++++ .+++..++.++...... -.|.... ...+..+++. ..|++++.- .|+ +++.+ ...+|+|
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~----~ad~~v~~S-----~g~-~lEA~--a~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMR----ASLLLVTDS-----GGL-QEEGA--ALGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHH----TEEEEEESC-----HHH-HHHHH--HTTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHH----hCcEEEECC-----cCH-HHHHH--HcCCCEE
Confidence 455554 55554455555544321 1233321 2223333333 257776643 344 44555 3678999
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
+....++... .++.| .+++.. .+.++|..++.+++.
T Consensus 298 ~~~~~~~~~~---~~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPE---GLKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHH---HHHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchh---hhcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 7643344333 24555 567774 499999999988874
No 216
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=36.64 E-value=68 Score=30.72 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=64.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC----eEE-EECCHHHH--------------HH-HHH---hc--CCCceEEEEeC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY----NVT-TCSQAAVA--------------LD-ILR---ER--KGCFDVVLSDV 87 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y----~V~-~a~sg~eA--------------Le-~L~---e~--~~~pDLVLlDI 87 (596)
+-+|.-||.|+...+..+..+++.++ .|. ...++.++ +. +.. .. ...||+||+|-
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 56899999999999999999998775 343 33342221 22 111 11 14699999997
Q ss_pred CCCCCCHHHHHHH-Hhc-cCCCCEEEE---cCCCCHHHHHHHHHc-----CCCeEEeCC--CCHHHHHHHHHHH
Q 007601 88 HMPDMDGFKLLEH-IGL-EMDLPVIMM---SADGRVSAVMRGIRH-----GACDYLIKP--IREEELKNIWQHV 149 (596)
Q Consensus 88 ~MPdmdGleLl~~-Ir~-~~~ipVIll---Ta~~d~~~~~eAl~~-----GA~DYL~KP--l~~eeL~~~l~~v 149 (596)
.-. .+.... ++. .+.. +|++ +.......+.+.++. -..-|-.|| ++.+.|.+++...
T Consensus 131 ~k~----~~~~~~~l~~l~~GG-~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~~~p~~~~~~~~~~~~~~~ 199 (202)
T 3cvo_A 131 RFR----VGCALATAFSITRPV-TLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQVEPQPIPPGSLMQLIRTM 199 (202)
T ss_dssp SSH----HHHHHHHHHHCSSCE-EEEETTGGGCSSGGGGHHHHCCCEEETTEEEEEECCCCCCGGGHHHHHHHH
T ss_pred CCc----hhHHHHHHHhcCCCe-EEEEeCCcCCcchHHHHHHHhHHhhcCceEEEEeCCCCCCHHHHHHHHHHh
Confidence 422 222222 222 2333 4433 334445555555542 223466666 7888888887764
No 217
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=35.06 E-value=3e+02 Score=26.16 Aligned_cols=80 Identities=11% Similarity=0.184 Sum_probs=51.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHHh-
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHIG- 102 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y--~V~-~a~sg~eALe~L~e~---~~~pDLVLlDI~MPdmdGleLl~~Ir- 102 (596)
+|.+.+|..||-++...+..++.++..++ .|. ...++.+.+..+... ...||+|++|...+ +-..+++.+.
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 178 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRLID 178 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHHHH
Confidence 34467999999999999999999987765 343 566777766554321 23599999996532 3345555552
Q ss_pred -ccCCCCEEE
Q 007601 103 -LEMDLPVIM 111 (596)
Q Consensus 103 -~~~~ipVIl 111 (596)
..+.-.+++
T Consensus 179 ~LkpGG~lv~ 188 (247)
T 1sui_A 179 LVKVGGVIGY 188 (247)
T ss_dssp HBCTTCCEEE
T ss_pred hCCCCeEEEE
Confidence 234444443
No 218
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=34.75 E-value=2.8e+02 Score=27.52 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=66.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~-~y~V~-~a~-sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~ 105 (596)
.+..+|||-||--=..-+......+... ++++. .|+ +.+.|.+..++.. +.-+..|+ +.+-..+
T Consensus 19 ~~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-----------~ell~~~ 85 (350)
T 4had_A 19 YFQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-----------EEMLASD 85 (350)
T ss_dssp ---CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-----------HHHHHCS
T ss_pred cccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-----------HHHhcCC
Confidence 3456799999988766655545555543 56765 344 3344444444432 22233332 2222235
Q ss_pred CCCEEEEcCCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHHh
Q 007601 106 DLPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVRK 152 (596)
Q Consensus 106 ~ipVIllTa~~--d~~~~~eAl~~GA~DYL~KPl--~~eeL~~~l~~vlrk 152 (596)
++-+|+++... ..+.+.+|+++|..=|+.||+ +.++..++++.+-+.
T Consensus 86 ~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 136 (350)
T 4had_A 86 VIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRN 136 (350)
T ss_dssp SCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHc
Confidence 55566655544 357788999999999999994 778888777665443
No 219
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=34.22 E-value=1.2e+02 Score=29.01 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVLlDI~MP---dmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
+..+..+.+.+. .+| |.+.|+.-. ...-++++++|++...+|||+--+-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 445555555553 356 445676422 22237899999877789999998888899999999999877654
No 220
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=34.21 E-value=1.7e+02 Score=30.10 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=69.3
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 33 girVLIVDDd~-~i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
.++++||-+.+ ...+.++.+.+..+-.|. .-.+.++..+++.. .|++++--.. +.-|+-+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHH--CCCCE
Confidence 56788886654 456677777766543333 22244443455543 5777764442 334566777763 46788
Q ss_pred EEEcCCCCHHHHHHHHHcC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~G---------A~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|... . .-..+.+..| .++|+..|-+.++|..++..++.
T Consensus 393 I~s~-~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 393 VVAR-T---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEES-S---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred EEeC-C---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 8632 2 2345666777 88999999999999999998873
No 221
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=33.71 E-value=1.8e+02 Score=29.10 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCC---CCCCHHHHHHHHh-cc-CCCCEEEEcCCCCH
Q 007601 45 CLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIG-LE-MDLPVIMMSADGRV 118 (596)
Q Consensus 45 i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~M---PdmdGleLl~~Ir-~~-~~ipVIllTa~~d~ 118 (596)
..+.+.......+..+. .+.+.+|+...+.. .+|+|=+.-.- -+.| ++...++. .. .++++|.-++-...
T Consensus 157 ~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~ 232 (272)
T 3tsm_A 157 LAKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTH 232 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCH
Confidence 34444444555677654 78888888666532 47887665321 1223 45555553 22 36899999999999
Q ss_pred HHHHHHHHcCCCeEEeC
Q 007601 119 SAVMRGIRHGACDYLIK 135 (596)
Q Consensus 119 ~~~~eAl~~GA~DYL~K 135 (596)
+.+.++.++|++.++.=
T Consensus 233 edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 233 EDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999874
No 222
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=33.63 E-value=1.3e+02 Score=29.47 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=60.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y--~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
.++++|+.+.+ .+.++.++++.+. .|......++..+++.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH--CCCCEE
Confidence 34666665533 1334444443321 23333333344444433 4676664432 334666777763 467888
Q ss_pred EEcCCCCHHHHHHHHHcCCCeEEeC-CCCHHHHHHHHHHHHH
Q 007601 111 MMSADGRVSAVMRGIRHGACDYLIK-PIREEELKNIWQHVVR 151 (596)
Q Consensus 111 llTa~~d~~~~~eAl~~GA~DYL~K-Pl~~eeL~~~l~~vlr 151 (596)
....... .+.+..|..+++.. |.+.++|..++..++.
T Consensus 299 ~~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 7543222 23455567889997 8999999999998875
No 223
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=33.55 E-value=2e+02 Score=27.21 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHc---CCCeEEe
Q 007601 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI 134 (596)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVLlDI~MPdm---dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~---GA~DYL~ 134 (596)
+..+..+.+.+. .+| ++++++.-.++ -.++++++++....+|||.-.+-...+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 445554545443 377 55566642211 13788899976668999999988888999999998 9998765
No 224
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=33.52 E-value=57 Score=30.92 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y~---V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
++.+-+|.-||-++...+..++.++..++. +. ...++.+.+..+. .+.||+|++|...+. -.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHH
Confidence 455679999999999999999999887654 54 4555655443321 235999999975433 33455554
No 225
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=33.51 E-value=2.5e+02 Score=28.47 Aligned_cols=65 Identities=8% Similarity=0.026 Sum_probs=42.9
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE
Q 007601 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (596)
Q Consensus 60 V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~-Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY 132 (596)
...+.+.+|+.+.++. ..|+|.+|-.-| +.+++ ++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 202 eVEv~tl~ea~eAl~a---GaD~I~LDn~~~-----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~I 267 (287)
T 3tqv_A 202 EVEVTNLDELNQAIAA---KADIVMLDNFSG-----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFI 267 (287)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESCCH-----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEEcCCCH-----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 3478999999998874 389999996333 22333 22222224556777777777877778888654
No 226
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=33.41 E-value=1.3e+02 Score=27.50 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=48.3
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 007601 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 28 ~~fp~girVLIVDDd~~i~~~L~~lL~~~~y~--V~-~a~sg~eALe~L~e~~--~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
..+|.+.+|..||-++...+..+..++..+.. +. ...+..+.+..+.... ..||+|++|...+ +-.++++.+
T Consensus 84 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~--~~~~~l~~~ 160 (225)
T 3tr6_A 84 LALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA--NTDLYYEES 160 (225)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH--HHHHHHHHH
Confidence 34555789999999999999999999876542 43 5667777666554210 3599999987422 223344444
No 227
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=32.84 E-value=1.4e+02 Score=28.06 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=46.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y--~V~-~a~sg~eALe~L~e~~--~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
.+|.+.+|..||-++...+..+..++..++ .+. ...+..+.+..+.... +.||+|++|...+ +-.++++.+
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~ 168 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR--NYPRYYEIG 168 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG--GHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHH--HHHHHHHHH
Confidence 344467999999999999999988876554 233 5667777666554321 3599999996422 223445544
No 228
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=32.56 E-value=17 Score=35.08 Aligned_cols=41 Identities=10% Similarity=-0.036 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCcc
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRF 307 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi 307 (596)
...-.|+.||..++..|. +...+.+ .+.+..|+.||||||.
T Consensus 24 ~H~~~H~~rV~~~a~~i~--a~~~~~d---~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 24 GHDIAHVERVYNNACYIA--KRENITD---TLVIELSSLLHDTVDS 64 (225)
T ss_dssp CHHHHHHHHHHHHHHHHH--HHTTCSC---CHHHHHHHHHTTTTCC
T ss_pred ccCHHHHHHHHHHHHHHH--hhccCCC---HHHHHHHHHHHcCCCC
Confidence 346799999999988761 2333443 4677889999999984
No 229
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=32.51 E-value=44 Score=31.16 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCCEEE--EcCCCCHHHHHHHHHcCCCeEEeCCCCH
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir~~-~~ipVIl--lTa~~d~~~~~eAl~~GA~DYL~KPl~~ 139 (596)
+.+++++.++.....+|+|-. -+|- ..|+++++.||+. +++||.+ ++.+.....+.++.+.||+..+.-....
T Consensus 11 ~~~~~~~~~~~~~~~~diie~--G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEV--GTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEE--CHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhcCccEEEe--CcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 445555555443223454322 2232 3578899999865 6788754 3343333337888899998887754443
Q ss_pred -HHHHHHHHHH
Q 007601 140 -EELKNIWQHV 149 (596)
Q Consensus 140 -eeL~~~l~~v 149 (596)
+.+...++.+
T Consensus 89 ~~~~~~~~~~~ 99 (211)
T 3f4w_A 89 VLTIQSCIRAA 99 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 4444444443
No 230
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=32.31 E-value=2.3e+02 Score=26.83 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhcCCCceEE-EEeCCCCCC---CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 65 QAAVALDILRERKGCFDVV-LSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLV-LlDI~MPdm---dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
+..+..+.+.+. ..|.| +.|..-... ..+++++++++..++||++-.+-.+.+.+.++++.||+..+.=
T Consensus 31 d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 444544555543 35644 445432211 2366778887767899999888888889999999999887664
No 231
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=31.69 E-value=3e+02 Score=25.82 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHc---CCCeEEe
Q 007601 66 AAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI 134 (596)
Q Consensus 66 g~eALe~L~e~~~~pD-LVLlDI~MPdm---dGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~---GA~DYL~ 134 (596)
..+.++.+.+. .+| ++++++.-.+. -.+++++++++...+|||.-.+-...+.+.++++. ||+.++.
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 34555555543 367 44567653321 24788899876678999999888888899999988 9988765
No 232
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=31.60 E-value=2.4e+02 Score=24.57 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y--~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
.+|.-||-++...+..+..+...+. .+ ....+..+.+..+......+|+|++|......+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999999888876553 23 35567666554433223469999998543233445555555
No 233
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=31.43 E-value=94 Score=30.65 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=62.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC------CCCCHHHHHHHHhccC
Q 007601 34 LRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHM------PDMDGFKLLEHIGLEM 105 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~--~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~M------PdmdGleLl~~Ir~~~ 105 (596)
++++|+-+.+.. ..++.+.... ...+.-.-+.++..+++.. .|++++-... ++.-|..+++.+. .
T Consensus 230 ~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~ 302 (394)
T 3okp_A 230 AQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--C 302 (394)
T ss_dssp CEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--T
T ss_pred eEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--c
Confidence 566666544322 2233332221 1222333344566666643 5777764443 1444677777774 5
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.+|||. |..+. ..+.+..| .+++..|-+.++|..++..++.
T Consensus 303 G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 303 GVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 678886 33332 23445667 9999999999999999998875
No 234
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=31.11 E-value=63 Score=31.96 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCC---C-CCC-CHHHHHHHHhccC-CCCEEE--EcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 65 QAAVALDILRERKGCFDVVLSDVH---M-PDM-DGFKLLEHIGLEM-DLPVIM--MSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~---M-Pdm-dGleLl~~Ir~~~-~ipVIl--lTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
+-.++++.+.+.. .|.+=+|++ . |.. -|.++++.||+.. +.|+.+ +.... ..++..+.++||+-...-.
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p-~~~i~~~~~aGAd~itvH~ 117 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPV-DALIESFAKAGATSIVFHP 117 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSC-HHHHHHHHHHTCSEEEECG
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCH-HHHHHHHHHcCCCEEEEcc
Confidence 4567777777643 666666653 2 443 3889999998643 777654 44333 4567777899998776655
Q ss_pred CCHHHHHHHHHHH
Q 007601 137 IREEELKNIWQHV 149 (596)
Q Consensus 137 l~~eeL~~~l~~v 149 (596)
...+++.+.++.+
T Consensus 118 Ea~~~~~~~i~~i 130 (246)
T 3inp_A 118 EASEHIDRSLQLI 130 (246)
T ss_dssp GGCSCHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 4344566666554
No 235
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=30.96 E-value=1.7e+02 Score=26.96 Aligned_cols=71 Identities=23% Similarity=0.248 Sum_probs=47.1
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 007601 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 29 ~fp~girVLIVDDd~~i~~~L~~lL~~~~y--~V~-~a~sg~eALe~L~e~~--~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
.++.+.+|..+|-++...+..++.++..+. .+. ...+..+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 90 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 90 ALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 345467999999999999999998887654 333 4567776665554321 35999999864 22233445554
No 236
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=30.80 E-value=61 Score=32.55 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=48.4
Q ss_pred CccEEEEEeCC-----HHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHhcCCCceEEEEeCCCCCCCHH--H-H
Q 007601 32 AGLRVLVVDDD-----ITCLRILEQMLRRCL-YNVTTCSQAA-----VALDILRERKGCFDVVLSDVHMPDMDGF--K-L 97 (596)
Q Consensus 32 ~girVLIVDDd-----~~i~~~L~~lL~~~~-y~V~~a~sg~-----eALe~L~e~~~~pDLVLlDI~MPdmdGl--e-L 97 (596)
..+|||||.-. +.....|..+|++.+ |+|....+.. +.+. +.-..+|+||++..+...+-- + +
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~~~~~l 79 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEETNRRF 79 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHHHHHHH
Confidence 46899999762 677788999999887 9998876631 2221 112359999998866544321 1 2
Q ss_pred HHHHhccCCCCEEEEc
Q 007601 98 LEHIGLEMDLPVIMMS 113 (596)
Q Consensus 98 l~~Ir~~~~ipVIllT 113 (596)
.+.++ ....+|.+=
T Consensus 80 ~~yV~--~Ggglv~~H 93 (281)
T 4e5v_A 80 LEYVQ--NGGGVVIYH 93 (281)
T ss_dssp HHHHH--TTCEEEEEG
T ss_pred HHHHH--cCCCEEEEe
Confidence 22233 355666653
No 237
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=30.74 E-value=38 Score=31.49 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCCEEE--EcCCCCHHHHHHHHHcCCCeEEeCCCCH
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir~~-~~ipVIl--lTa~~d~~~~~eAl~~GA~DYL~KPl~~ 139 (596)
+.+++++.++......|. +++.++- .+|.++++.|++. ++.|+++ ++.......+..+.+.||+....-+...
T Consensus 11 ~~~~~~~~~~~~~~~v~~--iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 11 STEAALELAGKVAEYVDI--IELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp CHHHHHHHHHHHGGGCSE--EEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhccCCE--EEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 456666666544311233 5665442 3577888888754 4778875 4432123347778899999887666543
Q ss_pred -HHHHHHHHH
Q 007601 140 -EELKNIWQH 148 (596)
Q Consensus 140 -eeL~~~l~~ 148 (596)
+.+..+++.
T Consensus 89 ~~~~~~~~~~ 98 (207)
T 3ajx_A 89 DSTIAGAVKA 98 (207)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 455544443
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=30.63 E-value=66 Score=34.27 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=30.5
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHhcCCCceEEEEeC
Q 007601 33 GLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 33 girVLIVDDd~---~i~~~L~~lL~~~~y~V~~a~---sg~----eALe~L~e~~~~pDLVLlDI 87 (596)
+.||++||-|+ ...+.+...-...+..+..+. +.. ++++.++.. .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 68999999996 333333333333355554432 222 334444332 499999998
No 239
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=30.28 E-value=1.2e+02 Score=29.52 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 94 GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.+++++++++..++||++-.+-.+.+.+.+++.+||+.++.=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 567888887666899999999888999999999999998864
No 240
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=30.07 E-value=79 Score=26.32 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=34.1
Q ss_pred CcccchHHHHHHHHHHHHHhccc---cc--c-------HHHHH-HHh-cCCCC--ChHHHHHHHHHHHHHHH
Q 007601 221 PRVVWSVELHQQFVSAVNQLGID---KA--V-------PKRIL-ELM-NVPGL--TRENVASHLQKFRLYLK 276 (596)
Q Consensus 221 ~~v~wt~eLh~~F~~av~~Lgl~---ka--~-------pK~IL-e~m-~v~gl--tre~taSHLqRvr~y~k 276 (596)
..-+|..+|-..|.+++..+--. +- + ..+++ +.+ ...|. |+.+|+||+|-++....
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 34589999999999988877422 11 0 01111 111 13344 44589999998887654
No 241
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=30.01 E-value=1.8e+02 Score=30.05 Aligned_cols=108 Identities=10% Similarity=0.054 Sum_probs=65.4
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 33 girVLIVDDd-~~i~~~L~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
.++++||-+. +...+.++.+.++.+-.|. .-.+.++..+++.. .|++++--.. +.-|+-+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSRF-EPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCcc-CCCcHHHHHHHH--CCCCE
Confidence 4667777544 3455666666665433332 22233333445543 4776664432 334566667663 46788
Q ss_pred EEEcCCCCHHHHHHHHHcC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~G---------A~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|... . .-..+.+..| .++|+..|-+.++|..++..++.
T Consensus 394 I~s~-~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVRR-T---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEES-S---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EECC-C---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 7642 2 3345666777 89999999999999999998873
No 242
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=29.90 E-value=46 Score=32.83 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCC-CCC-HHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 67 AVALDILRERKGCFDVVLSDVHMP-DMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 67 ~eALe~L~e~~~~pDLVLlDI~MP-dmd-GleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
.++++.+.+.. .|+|.+-+.-- ..+ .+++++++|+ .++|||+++... +.+..|++.||.
T Consensus 23 ~~~~~~l~~~G--aD~ielG~S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~------n~i~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI------EAIVPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC----CHHHHHHHHHHHTT-SSSCEEEECSCG------GGCCSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhhC-cCCCEEEecCcc------ccccCCCCEEEE
No 243
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=29.78 E-value=9.5 Score=39.99 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=26.8
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeC
Q 007601 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 34 irVLIVDDd--~~i~~~L~~lL~~~~y~V~~--a~sg~eALe~L~e~~~~pDLVLlDI 87 (596)
++|....+. ..+.+.++.+-+..+++|.. ..+..+.+.......+.|||++++.
T Consensus 7 ltvw~~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 64 (449)
T 3iot_A 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH 64 (449)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHGGGTCSCSEEEEET
T ss_pred EEEEeCCCCchHHHHHHHHHHhhccCCEEEEEecHHHHHHHHHHhhCCCCCCEEEeCc
Confidence 444433332 33344444443333555543 3444555544434444699998864
No 244
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=29.68 E-value=4e+02 Score=28.64 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=66.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 007601 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (596)
Q Consensus 33 girVLIVD----Dd~~i~~~L~~lL~~~-~y~V--~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd------------md 93 (596)
+..++++| +.....+.++.+-+.+ +..| ..+.+.++|..+++. ..|.|.+.+. |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCC-CCcCcccccccCCCcc
Confidence 56677776 4456666777766665 3333 357788888777654 3798887531 11 12
Q ss_pred HHHHHHHHhc---cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 94 GFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 94 GleLl~~Ir~---~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
-++++..+.. ...+|||.-.+-.....+.+++..||+....=
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 3455555532 34799999888888999999999999887664
No 245
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=29.56 E-value=3.6e+02 Score=26.90 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=60.5
Q ss_pred CCCccEEEEEeCCH-HHHHHHHHHHHh-CCCeEE-EECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 007601 30 FPAGLRVLVVDDDI-TCLRILEQMLRR-CLYNVT-TCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (596)
Q Consensus 30 fp~girVLIVDDd~-~i~~~L~~lL~~-~~y~V~-~a~sg~eALe-~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~ 105 (596)
....+||.||--=. .-...+..+.+. .++++. .+....+..+ ..++.. ..-+..| .+.+-..+
T Consensus 15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~-----------~~~ll~~~ 81 (340)
T 1zh8_A 15 PLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS-----------YEELLESG 81 (340)
T ss_dssp -CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC-----------HHHHHHSS
T ss_pred CCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC-----------HHHHhcCC
Confidence 34568999998773 333334443332 356664 4443333333 333322 1112222 12221234
Q ss_pred CCCEEEEcCCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 007601 106 DLPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (596)
Q Consensus 106 ~ipVIllTa~~--d~~~~~eAl~~GA~DYL~KPl--~~eeL~~~l~~vlr 151 (596)
++-+|+++... ..+.+.+|++.|..=|+.||+ +.++..++++.+-+
T Consensus 82 ~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 82 LVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp CCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45555554433 357788999999999999995 88888887776543
No 246
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=29.44 E-value=1.7e+02 Score=30.66 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=63.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHh---cCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRE---RKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e---~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i 107 (596)
..+||.||---..-...+..+...-++++. .+....+..+.+.+ ..+-++.-..+- .+.| .+.+-..+++
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~----~~~ll~~~~v 92 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDD----YKNMLKDKNI 92 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTT----HHHHTTCTTC
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCC----HHHHhcCCCC
Confidence 358999998776666656555443467765 44433333333322 111111112210 1112 2233223455
Q ss_pred CEEEEcCCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 007601 108 PVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (596)
Q Consensus 108 pVIllTa~~--d~~~~~eAl~~GA~DYL~KPl--~~eeL~~~l~~vlr 151 (596)
-+|+++... ..+.+.+|++.|..=|+.||+ +.++..++++.+-+
T Consensus 93 D~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 93 DAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp CEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 566555443 356778899999999999994 68888777776543
No 247
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=29.38 E-value=2.3e+02 Score=23.96 Aligned_cols=93 Identities=18% Similarity=0.140 Sum_probs=46.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~s-g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIl 111 (596)
+.+|.++|.++...+.++. .++.+....- ..+.++.+ .....|+||+-+. .+..-+.++..++.....+||.
T Consensus 29 g~~V~~id~~~~~~~~~~~----~~~~~~~gd~~~~~~l~~~--~~~~~d~vi~~~~-~~~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLED----EGFDAVIADPTDESFYRSL--DLEGVSAVLITGS-DDEFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp TCCEEEEESCHHHHHHHHH----TTCEEEECCTTCHHHHHHS--CCTTCSEEEECCS-CHHHHHHHHHHHHHHCCCCEEE
T ss_pred CCeEEEEECCHHHHHHHHH----CCCcEEECCCCCHHHHHhC--CcccCCEEEEecC-CHHHHHHHHHHHHHhCCceEEE
Confidence 5678899988875544432 3555443221 12233322 1224788887543 1111233444444333556776
Q ss_pred EcCCCCHHHHHHHHHcCCCeEEe
Q 007601 112 MSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 112 lTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
....... .....+.|++..+.
T Consensus 102 ~~~~~~~--~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 102 RVSSPKK--KEEFEEAGANLVVL 122 (141)
T ss_dssp EESCGGG--HHHHHHTTCSEEEE
T ss_pred EEcChhH--HHHHHHcCCCEEEC
Confidence 6654443 34455788754443
No 248
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=29.35 E-value=73 Score=27.02 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=45.0
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 007601 31 PAGLRVLVVDDD----ITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (596)
Q Consensus 31 p~girVLIVDDd----~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~ 105 (596)
|..+|||+|=+. ......+++.+++.++++. .+.+..++-..+ .++|+||+-..+... ++-+++.-...
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~~ 75 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKPK 75 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhccc
Confidence 344677776332 2666788888887665432 333333333322 258999998776543 33333332234
Q ss_pred CCCEEEEcC
Q 007601 106 DLPVIMMSA 114 (596)
Q Consensus 106 ~ipVIllTa 114 (596)
++||+.+..
T Consensus 76 ~~pv~~I~~ 84 (109)
T 2l2q_A 76 GIPIEIINT 84 (109)
T ss_dssp TCCEEECCH
T ss_pred CCCEEEECh
Confidence 789988765
No 249
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=29.35 E-value=56 Score=32.13 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCC--CCCHHHHHHHHhccCCCCEEEEcCC-CCHHHHHHHHHcCCCeEEe
Q 007601 67 AVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 67 ~eALe~L~e~~~~pDLVLlDI~MP--dmdGleLl~~Ir~~~~ipVIllTa~-~d~~~~~eAl~~GA~DYL~ 134 (596)
.++++.+.+.. .|+|.+-+.-. -.+-+++++++|+ .++|+|+++.. ... ..|++++|.
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 250
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=29.34 E-value=2.2e+02 Score=26.84 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=55.9
Q ss_pred HHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEE---EEeCCCCC-----CCHHHHHHHHhccCCCCEEEEcCCC
Q 007601 47 RILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVV---LSDVHMPD-----MDGFKLLEHIGLEMDLPVIMMSADG 116 (596)
Q Consensus 47 ~~L~~lL~~~-~y~V~-~a~sg~eALe~L~e~~~~pDLV---LlDI~MPd-----mdGleLl~~Ir~~~~ipVIllTa~~ 116 (596)
+.++.+-+.+ +..+. .+.+.+++...... ..|.| +..+ .++ ...++++++++.. ++|||...+-.
T Consensus 122 ~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~-~~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~ 196 (234)
T 1yxy_A 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGY-TPYSRQEAGPDVALIEALCKA-GIAVIAEGKIH 196 (234)
T ss_dssp HHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTS-STTSCCSSSCCHHHHHHHHHT-TCCEEEESCCC
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeecccc-CCCCcCCCCCCHHHHHHHHhC-CCCEEEECCCC
Confidence 3444443332 34443 56778887766543 37887 3322 121 1247888888765 89999988888
Q ss_pred CHHHHHHHHHcCCCeEEeC
Q 007601 117 RVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 117 d~~~~~eAl~~GA~DYL~K 135 (596)
+.+.+.++++.||+.++.=
T Consensus 197 s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 197 SPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp SHHHHHHHHTTCCSEEEEC
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 8999999999999988654
No 251
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=29.24 E-value=2.6e+02 Score=28.05 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=54.3
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCC
Q 007601 36 VLVVDDDITCL----RILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (596)
Q Consensus 36 VLIVDDd~~i~----~~L~~lL~~~~--y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~-~~~ip 108 (596)
+||-|++-... +.++..-+... .....+.+.+++.+.++. ..|+|++|-.-|+ +-.+.++.++. .+.+
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~-~~~~~v~~l~~~~~~v- 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW-QTQTAVQRRDSRAPTV- 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH-HHHHHHHHHHHHCTTC-
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccCCCe-
Confidence 67766654332 22333222222 234478889999888864 3899999973331 12233444443 2343
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEE
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL 133 (596)
.|..|+--+.+.+.+..+.|++.+.
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4556776677778787889987654
No 252
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=29.03 E-value=1.5e+02 Score=28.24 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=53.8
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHc-----C-CCeEE
Q 007601 65 QAAVALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-----G-ACDYL 133 (596)
Q Consensus 65 sg~eALe~L~e~~~~pD-LVLlDI~----MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~-----G-A~DYL 133 (596)
+..+....+.+. .++ +++.++. +.+. .++++++++...++|||...+-...+.+.++++. | +++.+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 455554445443 367 5666653 2333 3889999976668999999999998999999988 9 98875
Q ss_pred e------CCCCHHHHHHH
Q 007601 134 I------KPIREEELKNI 145 (596)
Q Consensus 134 ~------KPl~~eeL~~~ 145 (596)
. .+++..++++.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 4 35666665543
No 253
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=28.99 E-value=99 Score=28.66 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=42.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCCCC
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVHMP 90 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~y~--V~-~a~sg~eALe~L~e~--~~~pDLVLlDI~MP 90 (596)
++.+.+|.-||-++...+..++.++..+.. |. ...++.+.+..+... .+.||+|++|....
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 80 LQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 345679999999999999999988876542 43 566776655543310 03599999997543
No 254
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=28.95 E-value=37 Score=32.53 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=39.5
Q ss_pred ceEEEEeCCCCCC-------CHHHHHHHHhccC-CCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 80 FDVVLSDVHMPDM-------DGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 80 pDLVLlDI~MPdm-------dGleLl~~Ir~~~-~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.|.|+++-..|+. .+++.++++++.. ++||++.-+-.. +.+.++++.||+.++.=
T Consensus 139 ~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 139 VELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAGANCIVAG 201 (228)
T ss_dssp CSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHTCCEEEES
T ss_pred CCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHHHcCCCEEEEC
Confidence 7999998877753 3466677776544 788877666554 56778888899988664
No 255
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=28.74 E-value=1.9e+02 Score=29.04 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=64.1
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--eEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 007601 33 GLRVLVVDDD---ITCLRILEQMLRRCLY--NVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (596)
Q Consensus 33 girVLIVDDd---~~i~~~L~~lL~~~~y--~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~ 105 (596)
.++++|+.+. ....+.++.++++.+. .|. -.-+.++..+++.. .|++++-.. .+.-|..+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4667777651 1233455555554332 232 23334565666653 477666432 2334666777763 5
Q ss_pred CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 106 ~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.+|||... .+. ..+.+..|.++++..|-+.++|..++..++.
T Consensus 349 G~PvI~~~-~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAAR-VGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEES-CTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEecC-CCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 67887643 333 3445667888999999999999999998875
No 256
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=28.65 E-value=67 Score=30.73 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 67 ~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
+.+++.+.+.+ ||+| . .||+.-- ++++++++..++|||.=-.-.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i--E-iLPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI--E-LLPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE--E-EECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE--E-ECCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 35677777665 8876 2 2687543 788999877889999877778899999999999987544
No 257
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=28.42 E-value=2.2e+02 Score=31.63 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=71.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHh-
Q 007601 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG- 102 (596)
Q Consensus 33 girVLIV----DDd~~i~~~L~~lL~~~~y~V~~a---~sg~eALe~L~e~~~~pDLVLlDI~MPd-md-GleLl~~Ir- 102 (596)
+-+||+. |-|..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. ++ --++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578877 667788888999999999998643 45777788887765 999999887753 22 233556664
Q ss_pred ccCCCCEEEEcCCCCHHHHHHHH---HcCCCeEEeCCCCHHHHHHHHHHHH
Q 007601 103 LEMDLPVIMMSADGRVSAVMRGI---RHGACDYLIKPIREEELKNIWQHVV 150 (596)
Q Consensus 103 ~~~~ipVIllTa~~d~~~~~eAl---~~GA~DYL~KPl~~eeL~~~l~~vl 150 (596)
...++||++=-.....+...+-+ -.||+.|... ..+-...+.+++
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D---A~~Av~~a~~l~ 223 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN---ASRTVGVVAALL 223 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS---HHHHHHHHHHHT
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECC---HHHHHHHHHHHh
Confidence 34578887655545554432111 1288777653 334334444433
No 258
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=28.37 E-value=2e+02 Score=28.10 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=34.4
Q ss_pred HHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 95 leLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.++++++|+..++||++=.+-...+.+.+++..||+..+.=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 67888888766889888777777888999999999998875
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.30 E-value=71 Score=32.03 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=32.8
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC
Q 007601 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (596)
Q Consensus 32 ~girVLIVDDd~~---i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmd 93 (596)
.|.+|+++|.|+. ..+.+....+..+..+....+..+....+... .++|+||+| .++.+
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 4678999998862 23334444433444443344554443444333 359999999 44443
No 260
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=28.24 E-value=36 Score=33.92 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=36.7
Q ss_pred HHHHHHHhccCCCCEEEEcCC------CCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 95 FKLLEHIGLEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 95 leLl~~Ir~~~~ipVIllTa~------~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|++++++|.. +|+|+||=. +-.....++.+.|+++.|.-.+..+|... +....+
T Consensus 79 ~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~ 138 (252)
T 3tha_A 79 FELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECE 138 (252)
T ss_dssp HHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHH
T ss_pred HHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHH
Confidence 5555555533 899998843 33445677889999999998888877443 444443
No 261
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=28.10 E-value=14 Score=39.66 Aligned_cols=45 Identities=7% Similarity=-0.153 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCC-ccccccccccccccCcCccee
Q 007601 262 ENVASHLQKFRLYLKRLNGVSQQGGIT-NSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 262 e~taSHLqRvr~y~k~L~~~A~~~Gls-~~~~e~i~~AspLHDiGKi~i 309 (596)
...-.|-.+++.+++.| |+..+.. ....+.+..+..||||||+-+
T Consensus 277 ~~~w~hs~~~A~~a~~L---A~~~~~~~~~~~~~aflaGLLhDIGkl~l 322 (457)
T 3mem_A 277 VDYWQQAIWQAQSAGIL---ASMMPRGQRPLFGLAYLAGLLHNFGHLVL 322 (457)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHSCGGGCCCHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHhcccccCCCHHHHHHHHHHHHhhHHHH
Confidence 46889999999999999 8888875 345667788889999999976
No 262
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=27.74 E-value=93 Score=32.62 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eE-EEECCHHHHHHHHHhcCCCceEEEEeCCC
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCL---Y------NV-TTCSQAAVALDILRERKGCFDVVLSDVHM 89 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~---y------~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~M 89 (596)
-+|.+||=|+.+.+..++.+.... + .+ ....|+.+.++.+.+....||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999998875321 1 23 35678888776553223469999999754
No 263
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=27.68 E-value=2.1e+02 Score=27.06 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=42.9
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 33 GLRVLVVD------DDITCLRILEQMLRRCLYNVTTC----SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 33 girVLIVD------Dd~~i~~~L~~lL~~~~y~V~~a----~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
+-||++|+ |.....+.+++.|++.++++... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 56899996 44567778888888888888776 366666666654 466665 5666566666554
No 264
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=27.25 E-value=3.9e+02 Score=25.76 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=45.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE-CCHHHHHHHHHhc-C-CCceEEEEe----------CCCC----
Q 007601 30 FPAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTC-SQAAVALDILRER-K-GCFDVVLSD----------VHMP---- 90 (596)
Q Consensus 30 fp~girVLIVDDd~~i~~~L~~lL~~~~--y~V~~a-~sg~eALe~L~e~-~-~~pDLVLlD----------I~MP---- 90 (596)
...+.+|+++-..+...+..+.++.+.. .++..+ .+.++++...++. . +.+|+||.- +..|
T Consensus 9 ~~~m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV~I 88 (225)
T 2pju_A 9 LNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILI 88 (225)
T ss_dssp ----CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEE
T ss_pred cccCCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeCChHHHHHHhhCCCCEEEe
Confidence 3445578888888888888888888654 344443 4577888877653 2 248988852 1223
Q ss_pred CCCHHHHHHHHh
Q 007601 91 DMDGFKLLEHIG 102 (596)
Q Consensus 91 dmdGleLl~~Ir 102 (596)
..+|+++++.|.
T Consensus 89 ~vs~~Dil~aL~ 100 (225)
T 2pju_A 89 KPSGYDVLQFLA 100 (225)
T ss_dssp CCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 356677666663
No 265
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=27.24 E-value=5e+02 Score=26.26 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=50.7
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC--CCCH----------HHHHHHH----h-ccCCCCEEEEc-CCCCHH
Q 007601 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMP--DMDG----------FKLLEHI----G-LEMDLPVIMMS-ADGRVS 119 (596)
Q Consensus 58 y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MP--dmdG----------leLl~~I----r-~~~~ipVIllT-a~~d~~ 119 (596)
+.+..+.+.++|..+.... +|+|.+..-+- +.-| .+.++.+ + .++++.|+.-. +-...+
T Consensus 165 ~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpe 241 (286)
T 2p10_A 165 LTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPE 241 (286)
T ss_dssp EECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHH
T ss_pred eEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHH
Confidence 4566899999999887653 89999875432 3222 3344444 1 24666555444 456788
Q ss_pred HHHHHHHc--CCCeEEeCC
Q 007601 120 AVMRGIRH--GACDYLIKP 136 (596)
Q Consensus 120 ~~~eAl~~--GA~DYL~KP 136 (596)
.+..+++. |+++|+.-.
T Consensus 242 Dv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 242 DARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHHHHHCTTCCEEEESH
T ss_pred HHHHHHhcCCCccEEEeeh
Confidence 89999998 999999864
No 266
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=27.11 E-value=1.1e+02 Score=29.79 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=51.4
Q ss_pred HHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhccC-CCCEEEEcCCCCHHH
Q 007601 52 MLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLEM-DLPVIMMSADGRVSA 120 (596)
Q Consensus 52 lL~~~~y~V~~a~sg---~eALe~L~e~~~~pDLVLlDI~MPdmdG-------leLl~~Ir~~~-~ipVIllTa~~d~~~ 120 (596)
.+++.+..+..+-+. .+.++.+... ..+|+|++=-.-|+.+| ++-++++|+.. +++| .+.+--+.+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNI-QVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeE-EEECCCCHHH
Confidence 666777777655433 3344433321 13898887666676544 55566665433 4444 4566667888
Q ss_pred HHHHHHcCCCeEEeC
Q 007601 121 VMRGIRHGACDYLIK 135 (596)
Q Consensus 121 ~~eAl~~GA~DYL~K 135 (596)
+.++.++||+-++.=
T Consensus 187 i~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 187 TEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHTCCEEEES
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999988764
No 267
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.67 E-value=15 Score=39.28 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhhhcC-----CCccccccccccccccCcCccee
Q 007601 266 SHLQKFRLYLKRLNGVSQQGG-----ITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 266 SHLqRvr~y~k~L~~~A~~~G-----ls~~~~e~i~~AspLHDiGKi~i 309 (596)
.|...|...++.+ +..++ +++...+.+..|+-|||||+.-+
T Consensus 58 ~HSLgV~~la~~l---~~~l~~~~~~~~~~d~~~~~~AaLlHDiGh~Pf 103 (410)
T 2q14_A 58 QHSLGAFYLMSEA---ITQLTSKGNFIFDSEAEAVQAAILLHDIGHGPF 103 (410)
T ss_dssp HHHHHHHHHHHHH---HHHHHHTTCCCCHHHHHHHHHHHHHTTTTCCTT
T ss_pred ehHHHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHHHHHHhccCCCcc
Confidence 4555666666666 44444 56666778888999999999765
No 268
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=26.49 E-value=2e+02 Score=28.14 Aligned_cols=80 Identities=8% Similarity=0.059 Sum_probs=50.3
Q ss_pred CeEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 58 YNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 58 y~V~~a~sg~eALe~L~e~-~~~pDLVLlDI~MPdmdGleLl~~Ir~~-~~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
.-|....+.++++++.+.- ...+++|=+. +-.-++++.++++++. ++ .+|-.-.--+.+.+..+++.||+ |+.-
T Consensus 37 v~Vir~~~~~~a~~~a~al~~gGi~~iEvt--~~t~~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~Ai~AGA~-fIvs 112 (232)
T 4e38_A 37 IPVIAIDNAEDIIPLGKVLAENGLPAAEIT--FRSDAAVEAIRLLRQAQPE-MLIGAGTILNGEQALAAKEAGAT-FVVS 112 (232)
T ss_dssp EEEECCSSGGGHHHHHHHHHHTTCCEEEEE--TTSTTHHHHHHHHHHHCTT-CEEEEECCCSHHHHHHHHHHTCS-EEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEe--CCCCCHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHHHHcCCC-EEEe
Confidence 3456677777777766532 1246655554 4455689999999753 44 34433334568889999999996 5555
Q ss_pred C-CCHHH
Q 007601 136 P-IREEE 141 (596)
Q Consensus 136 P-l~~ee 141 (596)
| ++.+-
T Consensus 113 P~~~~~v 119 (232)
T 4e38_A 113 PGFNPNT 119 (232)
T ss_dssp SSCCHHH
T ss_pred CCCCHHH
Confidence 6 44433
No 269
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=26.31 E-value=2.6e+02 Score=23.83 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=65.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC-CE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL-PV 109 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~-a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i-pV 109 (596)
..++++|+.+.+. ...++.+++..+..+.. .-+.++..+++. ..|++++-.. .+.-|+.+++.+. ..+ ||
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 3678888877544 35666777665555443 223455555553 2688887544 3444677888774 464 88
Q ss_pred EEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
|..+..+.. .+.+..+. ++..|-+.++|...+..++.
T Consensus 103 i~~~~~~~~---~~~~~~~~--~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 103 IANSPLSAT---RQFALDER--SLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EECCTTCGG---GGGCSSGG--GEECTTCHHHHHHHHHHHHH
T ss_pred EeeCCCCch---hhhccCCc--eEEcCCCHHHHHHHHHHHHh
Confidence 873322222 12223332 37788899999999998875
No 270
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=26.23 E-value=1.2e+02 Score=30.78 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=47.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccC--CCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 80 FDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 80 pDLVLlDI~MPdmdGleLl~~Ir~~~--~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
.+||.+|+.- .....++++++++.- .+||++=-+-.+.+.+.++++.||+..+.-.
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999854 333478999997655 8999998899999999999999999998876
No 271
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=26.17 E-value=54 Score=32.37 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCceEEEEeCCC--CCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC
Q 007601 68 VALDILRERKGCFDVVLSDVHM--PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (596)
Q Consensus 68 eALe~L~e~~~~pDLVLlDI~M--PdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP 136 (596)
++++.+.+. ..|.|++-... ...+-++++++||+ .++|||+++... +.+..||+.|+.-.
T Consensus 27 ~~l~~~~~~--GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~ps 88 (235)
T 3w01_A 27 DDLDAICMS--QTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVPT 88 (235)
T ss_dssp HHHHHHHTS--SCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEEE
T ss_pred HHHHHHHHc--CCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEcc
Confidence 344444433 48999987754 23456788888887 899999998865 23456999988753
No 272
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=26.04 E-value=1.9e+02 Score=30.42 Aligned_cols=113 Identities=13% Similarity=0.023 Sum_probs=63.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCC
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLP 108 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y~---V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I-r~~~~ip 108 (596)
-+|..||-++...+.+++-++..+.+ +. ...|+.+.+.. .....||+|++|. ++.. .++++.. +.-..-.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~--~~~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK--EWGFGFDYVDLDP--FGTP-VPFIESVALSMKRGG 152 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS--CCSSCEEEEEECC--SSCC-HHHHHHHHHHEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH--hhCCCCcEEEECC--CcCH-HHHHHHHHHHhCCCC
Confidence 57999999999999999999877652 43 45566554430 2223599999997 3321 2344443 2111223
Q ss_pred EEEEcCCCCHH----HHHHHH-HcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 109 VIMMSADGRVS----AVMRGI-RHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 109 VIllTa~~d~~----~~~eAl-~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
++++|..+... ....++ ++|+.-.-.+-+....++..+..+.+
T Consensus 153 ll~~t~t~~~~l~g~~~~~~~rkYg~~p~r~~~~~e~~~r~~L~~~~~ 200 (392)
T 3axs_A 153 ILSLTATDTAPLSGTYPKTCMRRYMARPLRNEFKHEVGIRILIKKVIE 200 (392)
T ss_dssp EEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHH
T ss_pred EEEEEecchhhhccccHHHHHHHhCCcccccccccchhHHHHHHHHHH
Confidence 66676643221 233444 67765321111223445555555544
No 273
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=25.83 E-value=1.4e+02 Score=28.97 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=49.2
Q ss_pred EEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCC-C
Q 007601 60 VTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-I 137 (596)
Q Consensus 60 V~~a~sg~eALe~L~e~-~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KP-l 137 (596)
|....+.++++.+.+.- ...+++|=+.++ .-++++.++.|++...-.+|-.-.--+.+.+.++++.||.-. .-| +
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fi-vsP~~ 94 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLR--TEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFI-VSPGL 94 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEE-EESSC
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCC--CccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEE-EeCCC
Confidence 33445555555544321 123555444444 346888888886533225555555557888999999999754 446 5
Q ss_pred CHHHHHHHHH
Q 007601 138 REEELKNIWQ 147 (596)
Q Consensus 138 ~~eeL~~~l~ 147 (596)
+.+-++.+.+
T Consensus 95 ~~evi~~~~~ 104 (217)
T 3lab_A 95 TPELIEKAKQ 104 (217)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 5554444333
No 274
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=25.53 E-value=1.6e+02 Score=28.11 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=61.0
Q ss_pred HHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHHh---ccCCCCEEEEcCCCCHH
Q 007601 50 EQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIG---LEMDLPVIMMSADGRVS 119 (596)
Q Consensus 50 ~~lL~~~~y~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~M----P-dmdGleLl~~Ir---~~~~ipVIllTa~~d~~ 119 (596)
-..|+..|+.+. -+..+...+..+..-+ ||.|=+|-.+ . +.....+++.+. +..++.|| ..+-.+.+
T Consensus 145 l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt~~ 221 (259)
T 3s83_A 145 LKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVENAE 221 (259)
T ss_dssp HHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCSHH
T ss_pred HHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCCHH
Confidence 344556687765 4556667788887765 9999999643 1 222334555542 33455555 56667777
Q ss_pred HHHHHHHcCCCe----EEeCCCCHHHHHHHHHH
Q 007601 120 AVMRGIRHGACD----YLIKPIREEELKNIWQH 148 (596)
Q Consensus 120 ~~~eAl~~GA~D----YL~KPl~~eeL~~~l~~ 148 (596)
....+.+.|++- |+.||...+++...+..
T Consensus 222 ~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 222 MAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 777777889864 47799999998776543
No 275
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=25.52 E-value=22 Score=33.25 Aligned_cols=44 Identities=16% Similarity=0.038 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhhh-----cCCCccccccccccccccCcCccee
Q 007601 260 TRENVASHLQKFRLYLKRLNGVSQQ-----GGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 260 tre~taSHLqRvr~y~k~L~~~A~~-----~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
..|+++.|.-||..++..| +.. .+++. +.+..++-+||++.+-+
T Consensus 29 ~~esvaeHs~rVa~~A~~l---a~~~~~~~~~~d~---~~v~~~aLlHD~~E~~~ 77 (177)
T 2cqz_A 29 EPESIADHSFGVAFITLVL---ADVLEKRGKRIDV---EKALKMAIVHDLAEAII 77 (177)
T ss_dssp SCCBHHHHHHHHHHHHHHH---HHHHHHTTCCCCH---HHHHHHHHHTTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HHHHHHcCCCCCH---HHHHHHHHHhchHHHHc
Confidence 5678999999999999998 554 34433 33446678999987754
No 276
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=25.46 E-value=2.5e+02 Score=26.66 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=47.4
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 007601 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (596)
Q Consensus 28 ~~fp~girVLIVDDd~~i~~~L~~lL~~~~y~--V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~I 101 (596)
..+|.+.+|..||-++...+..+..++..++. |. ...++.+.+..+. ....||+|++|...+ +-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEECCchH--HHHHHHHHH
Confidence 34555679999999999999999999876542 43 5667666554332 112699999997433 223455555
No 277
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=24.92 E-value=5.7e+02 Score=26.14 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=29.3
Q ss_pred cCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 104 ~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
...+|+|++-...+.. +.++.| ..++..+ +.++|..++..++.
T Consensus 318 a~g~PvV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 318 GMGVPVLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp GTTCCEEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred HhCCCEEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 3578998763333322 245677 5677766 89999999988875
No 278
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=24.90 E-value=76 Score=29.64 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=34.6
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCCEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 79 CFDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 79 ~pDLVLlDI~MPdmdG-------leLl~~Ir~~-----~~ipVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
..|.|+++-..|+.+| ++-++++++. .+.||++.-+-. .+.+.++.+.||+..+.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEE
Confidence 3788888776665433 3444555421 267777655544 56667788889988755
No 279
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=24.82 E-value=3e+02 Score=25.63 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=45.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHhc------------C-CCceEEEEeCCCCCCCH
Q 007601 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER------------K-GCFDVVLSDVHMPDMDG 94 (596)
Q Consensus 31 p~girVLIVDDd~~i~~~L~~lL~~~~y~--V-~~a~sg~eALe~L~e~------------~-~~pDLVLlDI~MPdmdG 94 (596)
|.+.+|..||-++...+..+..++..++. + ....+..+.+..+... . ..||+|++|...+. -
T Consensus 83 ~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~--~ 160 (239)
T 2hnk_A 83 PEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN--Y 160 (239)
T ss_dssp CTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--H
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--H
Confidence 44568999999999999999998876542 3 3566776665544321 1 35999999964332 2
Q ss_pred HHHHHHH
Q 007601 95 FKLLEHI 101 (596)
Q Consensus 95 leLl~~I 101 (596)
.++++.+
T Consensus 161 ~~~l~~~ 167 (239)
T 2hnk_A 161 PNYYPLI 167 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444544
No 280
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=24.67 E-value=3e+02 Score=27.83 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=55.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCC--CCC-CHHHHHHHHhccCCCCEEEEcCCCCH-------------HHHHHHH
Q 007601 62 TCSQAAVALDILRERKGCFDVVLSDVHM--PDM-DGFKLLEHIGLEMDLPVIMMSADGRV-------------SAVMRGI 125 (596)
Q Consensus 62 ~a~sg~eALe~L~e~~~~pDLVLlDI~M--Pdm-dGleLl~~Ir~~~~ipVIllTa~~d~-------------~~~~eAl 125 (596)
.+.+.+.+....+.. -|-|=++-.+ ++. -++.+++.+++..++||.+|--..+- +.+..+.
T Consensus 45 c~~s~~~a~~A~~gG---AdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~ 121 (287)
T 3iwp_A 45 CVDSVESAVNAERGG---ADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAK 121 (287)
T ss_dssp EESSHHHHHHHHHHT---CSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhC---CCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHH
Confidence 678888888887654 3444444343 343 37889999987677998776543332 4566777
Q ss_pred HcCCCeEEeC---C---CCHHHHHHHHHH
Q 007601 126 RHGACDYLIK---P---IREEELKNIWQH 148 (596)
Q Consensus 126 ~~GA~DYL~K---P---l~~eeL~~~l~~ 148 (596)
++||++++.= | ++.+.++..+..
T Consensus 122 ~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 122 LYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 9999998766 3 556666666654
No 281
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=24.40 E-value=39 Score=31.43 Aligned_cols=50 Identities=8% Similarity=0.071 Sum_probs=33.2
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007601 34 LR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (596)
Q Consensus 34 ir-VLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLl 85 (596)
|| |+|||.....-..+.+.|++.++.+..+...+..++.+... .+|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 35 99999776666678888988888877665532223333332 3787777
No 282
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=24.10 E-value=91 Score=31.28 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHHHh
Q 007601 118 VSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVRK 152 (596)
Q Consensus 118 ~~~~~eAl~~GA~DYL~KPl--~~eeL~~~l~~vlrk 152 (596)
.+.+.+|++.|..=|+.||+ +.++..++++.+-+.
T Consensus 81 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 117 (337)
T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKV 117 (337)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 45678899999999999994 677888877766443
No 283
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=24.00 E-value=2.2e+02 Score=29.59 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=71.1
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCC--eEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 007601 34 LRVLVVDD--DI------------TCLRILEQMLRRCLY--NVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95 (596)
Q Consensus 34 irVLIVDD--d~------------~i~~~L~~lL~~~~y--~V~--~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGl 95 (596)
.+++|+.+ .+ ...+.++.++++.+. .|. -.-+.++..+++.......|++++-..- +.-|+
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~-Eg~~~ 373 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFY-EPFGL 373 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSC-BCCCS
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECccc-CCCCc
Confidence 57888877 21 126677777776543 233 3334567777776420001888774432 33466
Q ss_pred HHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 96 eLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
-+++.+. ..+|||... .+ ...+.+..|.++++..|-+.++|..++..++.
T Consensus 374 ~~lEAma--~G~PvI~s~-~~---g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 374 APVEAMA--SGLPAVVTR-NG---GPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHHHHH--TTCCEEEES-SB---HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHHHHH--cCCCEEEec-CC---CHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 7777774 577888643 22 24566777888999999999999999988874
No 284
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis}
Probab=23.94 E-value=22 Score=34.00 Aligned_cols=64 Identities=9% Similarity=-0.118 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhh-hhhhcCCCcccc--ccccccccccCcCcce-e---------eeeccCC-CCChHHHHHHHHh
Q 007601 266 SHLQKFRLYLKRLNG-VSQQGGITNSFC--APIETNVKLGSLGRFD-I---------QALAASG-QIPPQTLAALHAE 329 (596)
Q Consensus 266 SHLqRvr~y~k~L~~-~A~~~Gls~~~~--e~i~~AspLHDiGKi~-i---------~iL~KpG-kL~~ee~~imk~~ 329 (596)
.|-+||..++..|-. .....++++..- ..+..|+-|||||..- . -|.+.+- =++.+|...+-.-
T Consensus 22 ~ha~~V~~~A~~Lf~~l~~~~~l~~~~~~~~lL~~Aa~LHdIG~~I~~~~~hkHs~Yii~n~~l~Gfs~~e~~~lA~l 99 (209)
T 3rf0_A 22 EQARRVLETTEQLYTQWLAQNTKLVQPQLEALLKWAAMLHEVGLSINHSGMHRHSAYILQNTNLPGFNQEQQTLLATL 99 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHTTGGGGTCSTTHHHHHHHHHHHSCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcccccCcccchHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 344555555444422 133456666666 8899999999999863 2 1122211 1578888777663
No 285
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=23.72 E-value=1.5e+02 Score=30.08 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=30.8
Q ss_pred HHHHHHHhccCCCCEEEEcCCCCHHHHHHH-HHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRG-IRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 95 leLl~~Ir~~~~ipVIllTa~~d~~~~~eA-l~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.-+++.+ ...+|||.-+...+.....+. .+.| ++..+-+.++|..++..++.
T Consensus 293 ~~~lEAm--A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 293 HNLLEPT--CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp CCCHHHH--TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred cCHHHHH--HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 3345554 256788853232333333332 3444 56666789999999998875
No 286
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=23.41 E-value=2.5e+02 Score=24.07 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=42.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 007601 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (596)
Q Consensus 35 rVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir 102 (596)
+|.-||-++...+..+..+...+..+. ...+..+.+..+......+|+|++|.... .+--++++.+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 499999999999999888876543433 45566665544443223599999995332 22234455543
No 287
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=23.10 E-value=1.5e+02 Score=31.15 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=56.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH--HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA--VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLP 108 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~--eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir-~~~~ip 108 (596)
.++.|++||.++...+.++ ..++.+.. .|+. +.|+.+ .-...|+||+-+.- +..-+.++..++ ..++++
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi~-GDat~~~~L~~a--gi~~A~~viv~~~~-~~~n~~i~~~ar~~~p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVFY-GDATRMDLLESA--GAAKAEVLINAIDD-PQTNLQLTEMVKEHFPHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCEE-SCTTCHHHHHHT--TTTTCSEEEECCSS-HHHHHHHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEE-cCCCCHHHHHhc--CCCccCEEEECCCC-hHHHHHHHHHHHHhCCCCe
Confidence 3678999999998765544 44665543 2322 233332 12347888876532 122344555555 357788
Q ss_pred EEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 109 VIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 109 VIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
||..+.. ........+.||+..+.-
T Consensus 98 Iiara~~--~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 98 IIARARD--VDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp EEEEESS--HHHHHHHHHTTCSSCEET
T ss_pred EEEEECC--HHHHHHHHHCCCCEEECc
Confidence 8887754 455666678999876653
No 288
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=22.61 E-value=1.5e+02 Score=31.17 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=40.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCe---E-EEECCHHHHHHHHHhcCCCceEEEEeCCC
Q 007601 34 LRVLVVDDDITCLRILEQMLRRC------LYN---V-TTCSQAAVALDILRERKGCFDVVLSDVHM 89 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~------~y~---V-~~a~sg~eALe~L~e~~~~pDLVLlDI~M 89 (596)
-+|-+||=|+.+.+.-++.|... ..+ + ....|+.+.++...+....||+||+|+--
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 294 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCC
Confidence 47999999999999999887431 111 3 35788888887655444469999999754
No 289
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=22.52 E-value=2.1e+02 Score=29.16 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=49.4
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeE-EeCCC
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DY-L~KPl 137 (596)
..+.++|+++++.-. ++++.+++=-++..| ++.+++|+..-.+||+.==...+.....++++.|+.|+ ..|+.
T Consensus 193 ~~~~~~a~~~~~~L~-~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~ 266 (354)
T 3jva_A 193 AWTPKDAVKAIQALA-DYQIELVEQPVKRRD-LEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLM 266 (354)
T ss_dssp CSCHHHHHHHHHHTT-TSCEEEEECCSCTTC-HHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEECCCChhh-HHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECch
Confidence 447788888887654 578877775454333 66677787666788876444456677778888776665 56763
No 290
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=22.22 E-value=2.4e+02 Score=29.24 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=47.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 007601 34 LRVLVVDDDITCLRILEQMLRRC---------------LYN-VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK 96 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~---------------~y~-V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGle 96 (596)
.+|..+|-++...+.+++-++.. +.. +. ...++.+.+... ...||+|++|- |. ...+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~~-~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--FG-SPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--SS-CCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--CC-CHHH
Confidence 47999999999999999988765 543 43 566776655432 23599999985 32 2345
Q ss_pred HHHHH-hccCCCCEEEEcCC
Q 007601 97 LLEHI-GLEMDLPVIMMSAD 115 (596)
Q Consensus 97 Ll~~I-r~~~~ipVIllTa~ 115 (596)
+++.. +.-..-.++.+|..
T Consensus 146 ~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 55543 21111226666654
No 291
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=22.17 E-value=5.6e+02 Score=25.44 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=61.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCE
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~-~~y~V~-~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipV 109 (596)
.++||.||--=..-...+..+.+. .++++. .+....+..+.+.+. +.+-..+ |--++++ .+++-+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~~~~~~~------~~~~ll~----~~~~D~ 78 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---TGARGHA------SLTDMLA----QTDADI 78 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---HCCEEES------CHHHHHH----HCCCSE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---cCCceeC------CHHHHhc----CCCCCE
Confidence 568999998765555556555554 367765 444333333333322 2221111 2122322 245555
Q ss_pred EEEcCCCC--HHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHHHHH
Q 007601 110 IMMSADGR--VSAVMRGIRHGACDYLIKP--IREEELKNIWQHVVR 151 (596)
Q Consensus 110 IllTa~~d--~~~~~eAl~~GA~DYL~KP--l~~eeL~~~l~~vlr 151 (596)
|+++.... .+.+.++++.|..=|+.|| .+.++..++++.+-+
T Consensus 79 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 55544443 5567789999999999999 477888777766544
No 292
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=22.12 E-value=1.3e+02 Score=32.06 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=49.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCC---CCHHHHHHHHHcCCCeEE-eCCC---
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD---GRVSAVMRGIRHGACDYL-IKPI--- 137 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~---~d~~~~~eAl~~GA~DYL-~KPl--- 137 (596)
+..++++.+.+.-++++++.+.==++..| ++-.++|+....+||+ ... .+.....++++.|+.|++ +|+-
T Consensus 274 t~~eai~~~~~~l~~y~i~~iEdPl~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiG 350 (436)
T 2al1_A 274 TGPQLADLYHSLMKRYPIVSIEDPFAEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQIG 350 (436)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CHHHHHHHHHHHHHhCCcEEEECCCCCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhcC
Confidence 55777765443212378888866666544 5666777655566774 333 256788899999988775 5663
Q ss_pred CHHHHHHHHHH
Q 007601 138 REEELKNIWQH 148 (596)
Q Consensus 138 ~~eeL~~~l~~ 148 (596)
...+.++++.-
T Consensus 351 Gitea~~ia~l 361 (436)
T 2al1_A 351 TLSESIKAAQD 361 (436)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 293
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=22.09 E-value=2.5e+02 Score=25.02 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=43.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHh
Q 007601 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG 102 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~~y-~V-~~a~sg~eALe~L~e~~~~pDLVLlDI~MPd--mdGleLl~~Ir 102 (596)
.+|.-||-++...+..+..++..+. .+ ....+..+.+..+. .+.+|+|++|.-... .+-.++++.+.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~~ 138 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAALG 138 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHHH
Confidence 4799999999999999988876553 33 35566665543221 235999999854332 22344555553
No 294
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=21.68 E-value=60 Score=30.81 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=36.7
Q ss_pred CceEEEEeCCCCCC-------CHHHHHHHHhccC-----CCCEEEEcCCCCHHHHHHHHHcCCCeEEeC
Q 007601 79 CFDVVLSDVHMPDM-------DGFKLLEHIGLEM-----DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (596)
Q Consensus 79 ~pDLVLlDI~MPdm-------dGleLl~~Ir~~~-----~ipVIllTa~~d~~~~~eAl~~GA~DYL~K 135 (596)
..|.|+++-..|+. .+++.+++++... ++|+++.-+-. .+.+.++++.||+.+..=
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvg 207 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAG 207 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEES
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 36888888776643 3455566665322 67877655544 566677888899887654
No 295
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=21.64 E-value=4e+02 Score=26.91 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=60.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEE
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y~V~-~a~s-g~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVI 110 (596)
++||.||---..-...+...+...++++. .+.. .+.+.+..++.. ..-+..| .+.+-..+++-+|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~vD~V 92 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA--DARRIAT-----------AEEILEDENIGLI 92 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS--SCCEESC-----------HHHHHTCTTCCEE
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCCEE
Confidence 58999997653333334444444577765 4443 333333333321 1112222 1233223455566
Q ss_pred EEcCCC--CHHHHHHHHHcCCCeEEeCCC--CHHHHHHHHHHHH
Q 007601 111 MMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (596)
Q Consensus 111 llTa~~--d~~~~~eAl~~GA~DYL~KPl--~~eeL~~~l~~vl 150 (596)
+++... ..+.+.+|++.|..=|+.||+ +.++..++++.+-
T Consensus 93 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 93 VSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 655443 356678899999999999994 7888888777653
No 296
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=21.63 E-value=31 Score=36.37 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 007601 266 SHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 266 SHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
.|..-|....+.+ +..+|+++ +.+..|+-|||||+.-+
T Consensus 78 ~HSl~Va~iar~i---a~~l~l~~---~l~~~a~LlHDiGh~PF 115 (376)
T 2dqb_A 78 THTLEVAQVSRSI---ARALGLNE---DLTEAIALSHDLGHPPF 115 (376)
T ss_dssp HHHHHHHHHHHHH---HHHTTCCH---HHHHHHHHHTTTTCCSS
T ss_pred HHHHHHHHHHHHH---HHHcCCCH---HHHHHHHHHHhcCCCcc
Confidence 4888888889988 88899885 45667788999999743
No 297
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=21.47 E-value=2.9e+02 Score=27.90 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCC--------CCCCHHHHHHHHhccCCCCEEEEcCCC------------C-----HH
Q 007601 65 QAAVALDILRERKGCFDVVLSDVHM--------PDMDGFKLLEHIGLEMDLPVIMMSADG------------R-----VS 119 (596)
Q Consensus 65 sg~eALe~L~e~~~~pDLVLlDI~M--------PdmdGleLl~~Ir~~~~ipVIllTa~~------------d-----~~ 119 (596)
+-..|.+.+.+.. ..+++|+.-.. -++..+..+++. .+++||++=+.+. . ..
T Consensus 149 ei~~ave~i~~~G-n~~i~L~erg~~y~~~~~~vdl~~i~~lk~~--~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~ 225 (285)
T 3sz8_A 149 QLKHVVSKCGEVG-NDRVMLCERGSSFGYDNLVVDMLGFRQMAET--TGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLD 225 (285)
T ss_dssp GTHHHHHHHHHTT-CCCEEEEECCEECSSSCEECCTTHHHHHHHH--TTSCCEEEETTTTCC---------------HHH
T ss_pred HHHHHHHHHHHcC-CCcEEEEeCCCCCCCCcCccCHHHHHHHHHh--CCCCCEEEeCCCccccCCCcCCCCCCchhhHHH
Confidence 3457778777653 46899986422 245566555443 2368999866665 3 45
Q ss_pred HHHHHHHcCCCe-EEeCCCCH
Q 007601 120 AVMRGIRHGACD-YLIKPIRE 139 (596)
Q Consensus 120 ~~~eAl~~GA~D-YL~KPl~~ 139 (596)
....|+..||++ ++.|-+++
T Consensus 226 ~a~AAvA~GA~gl~IE~H~~p 246 (285)
T 3sz8_A 226 LARAGIAVGIAGLFLEAHPDP 246 (285)
T ss_dssp HHHHHHHHCCSEEEEEEESCG
T ss_pred HHHHHHHhCCCEEEEEeccCh
Confidence 667888999997 56664443
No 298
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=21.33 E-value=1.6e+02 Score=28.64 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=60.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCC---------CCCCCHHHHHHHHh
Q 007601 34 LRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVH---------MPDMDGFKLLEHIG 102 (596)
Q Consensus 34 irVLIVDDd~~i~~~L~~lL~~~--~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI~---------MPdmdGleLl~~Ir 102 (596)
++++|+-+.+ ....++.+.+.. ...+.-.-+..+..+++.. .|++++-.. ..+.-|+.+++.+.
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 5666775532 122233333222 2222233344555565553 477766443 12344677777774
Q ss_pred ccCCCCEEEEcCCCCHHHHHHHHHc--CCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 103 LEMDLPVIMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 103 ~~~~ipVIllTa~~d~~~~~eAl~~--GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
..+|||... .+. ..+.++. |..+|+..| +.++|.+++.+++.
T Consensus 264 --~G~PvI~s~-~~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 264 --SGTPVVGTG-NGC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp --TTCCEEECC-TTT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred --cCCCEEEcC-CCC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 567888633 233 4556677 788899999 99999998877653
No 299
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=21.16 E-value=6.1e+02 Score=25.07 Aligned_cols=46 Identities=7% Similarity=0.216 Sum_probs=31.3
Q ss_pred CCCEEEEcCCCC--HHHHHHHHHcCCCeEEeCC--CCHHHHHHHHHHHHH
Q 007601 106 DLPVIMMSADGR--VSAVMRGIRHGACDYLIKP--IREEELKNIWQHVVR 151 (596)
Q Consensus 106 ~ipVIllTa~~d--~~~~~eAl~~GA~DYL~KP--l~~eeL~~~l~~vlr 151 (596)
++-+|+++.... .+.+.++++.|..=|+.|| .+.++...++..+-+
T Consensus 64 ~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 64 NVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444443332 4556788899998899999 578888777766544
No 300
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=21.15 E-value=5.1e+02 Score=25.93 Aligned_cols=93 Identities=11% Similarity=0.076 Sum_probs=55.8
Q ss_pred EEEEEeCCHHHHHH----HHHHHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 007601 35 RVLVVDDDITCLRI----LEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (596)
Q Consensus 35 rVLIVDDd~~i~~~----L~~lL~~~~y---~V~~a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~i 107 (596)
-+||.||+..+... ++..-+..+. ....+.+.+++.+.++. ..|.|.+|-.-|+. --+..+.++ ..+
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~~~-~k~av~~v~--~~i 241 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPLEA-LREAVRRVG--GRV 241 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCHHH-HHHHHHHHT--TSS
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCHHH-HHHHHHHhC--CCC
Confidence 37888887765332 3332222322 23478899999888865 37999999743321 011222222 357
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 108 pVIllTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
|++. ++--+.+.+.+..+.|++.+-.
T Consensus 242 pi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 242 PLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp CEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred eEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 7766 4556678888888999876543
No 301
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.99 E-value=4.5e+02 Score=24.50 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH---H---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCC
Q 007601 44 TCLRILEQMLRRCLYNVTTCSQA---A---VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADG 116 (596)
Q Consensus 44 ~i~~~L~~lL~~~~y~V~~a~sg---~---eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~ 116 (596)
.+...+++.+++.+|.+..+... . +.++.+... .+|-||+--..+ -+.++.++ ...+|+|++....
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~~~ 95 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN----PQTVQEIL-HQQMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC----HHHHHHHH-TTSSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc----HHHHHHHH-HCCCCEEEEeccc
Confidence 44556666777789988765432 2 344455444 488877754332 55666664 3588999886543
No 302
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=20.97 E-value=72 Score=30.92 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCC----CCC-CHHHHHHHHhcc--CCCCEE--EEcCCCCHHHHHHHHHcCCCeEEe
Q 007601 64 SQAAVALDILRERKGCFDVVLSDVHM----PDM-DGFKLLEHIGLE--MDLPVI--MMSADGRVSAVMRGIRHGACDYLI 134 (596)
Q Consensus 64 ~sg~eALe~L~e~~~~pDLVLlDI~M----Pdm-dGleLl~~Ir~~--~~ipVI--llTa~~d~~~~~eAl~~GA~DYL~ 134 (596)
.+-.++++.+.+.. .|.+-+|++. |.. -|.++++.||.. +++|+. ++....+ .++..+.++||+-...
T Consensus 17 ~~l~~~i~~l~~~g--~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~-~~i~~~~~aGad~itv 93 (228)
T 3ovp_A 17 ANLGAECLRMLDSG--ADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPE-QWVKPMAVAGANQYTF 93 (228)
T ss_dssp GGHHHHHHHHHHTT--CSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGG-GGHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHHHHcC--CCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHH-HHHHHHHHcCCCEEEE
Confidence 34567777776543 6666666632 433 388999999865 677765 3554443 4567777999987766
Q ss_pred CCCCHHHHHHHHHHH
Q 007601 135 KPIREEELKNIWQHV 149 (596)
Q Consensus 135 KPl~~eeL~~~l~~v 149 (596)
-.....++.+.++.+
T Consensus 94 H~Ea~~~~~~~i~~i 108 (228)
T 3ovp_A 94 HLEATENPGALIKDI 108 (228)
T ss_dssp EGGGCSCHHHHHHHH
T ss_pred ccCCchhHHHHHHHH
Confidence 543333455555554
No 303
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=20.74 E-value=47 Score=31.23 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred HHHHHHHHhccccccHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhhhhcCCCccccccccccccccCcCccee
Q 007601 232 QFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFDI 309 (596)
Q Consensus 232 ~F~~av~~Lgl~ka~pK~ILe~m~v~gltre~taSHLqRvr~y~k~L~~~A~~~Gls~~~~e~i~~AspLHDiGKi~i 309 (596)
.|+..+..|...+... . +.......|+||.|.=|++.++..| +...|++.+..+.+...+.+||++.+-+
T Consensus 12 ~Fl~~~~~LK~i~R~g---w--~~~gv~~~EsVAeHS~~vA~iA~~l---a~~~~vd~~~~~r~~~maL~HDl~E~~~ 81 (173)
T 1ynb_A 12 KFIHEVGSLKLTPRSG---W--LKLGIRLPESVAEHNFRAAIIAFIL---ALKSGESVEKACKAATAALFHDLHEART 81 (173)
T ss_dssp HHHHHHHGGGGSBCGG---G--GGGTCSSCCBHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHhccCccCC---c--ccCCCCCCCcHHHHHHHHHHHHHHH---hhhcCCChhHHHHHHHHHHHcchHHhhc
Confidence 4776667664333211 1 1122235678999999999998888 5545676633344445577999999866
No 304
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=20.62 E-value=2.4e+02 Score=29.00 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=53.8
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEE-eCCCCHHH
Q 007601 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-IKPIREEE 141 (596)
Q Consensus 63 a~sg~eALe~L~e~~~~pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL-~KPl~~ee 141 (596)
..+.++|+++++.-. ++++.+++-=++..| ++.+++|+..-.+||..==...+.....++++.|+.|++ .|+....=
T Consensus 207 ~~~~~~a~~~~~~l~-~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GG 284 (372)
T 3tj4_A 207 KWDLPTCQRFCAAAK-DLDIYWFEEPLWYDD-VTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGG 284 (372)
T ss_dssp CCCHHHHHHHHHHTT-TSCEEEEESCSCTTC-HHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTH
T ss_pred CCCHHHHHHHHHHHh-hcCCCEEECCCCchh-HHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCC
Confidence 346788888887654 578877776555433 666777876667888864444567777888888877765 67765444
Q ss_pred HHH
Q 007601 142 LKN 144 (596)
Q Consensus 142 L~~ 144 (596)
|..
T Consensus 285 it~ 287 (372)
T 3tj4_A 285 ITE 287 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 305
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=20.29 E-value=4.1e+02 Score=25.57 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=39.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 007601 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 33 girVLIVDDd~~i~~~L~~lL~~~~y-~V~-~a~sg~eALe~L~e~~~~pDLVLlDI 87 (596)
..+|.-+|-++...+.++..++..+. .+. ...+..+....+......+|+|++|.
T Consensus 108 ~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 108 KGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 36899999999999999999988765 333 45666655443321223599999994
No 306
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.27 E-value=35 Score=34.40 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=32.2
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHhcCCCceEEEEeC
Q 007601 33 GLRVLVVDDD---ITCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 33 girVLIVDDd---~~i~~~L~~lL~~~~y~V~~a~---sg~----eALe~L~e~~~~pDLVLlDI 87 (596)
+.+|+++|-| +...+.++.+.+..++.+.... +.. ++++.++. ..+|+||+|.
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT 188 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT 188 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 5689999998 3444445555555466655432 333 34444432 2599999998
No 307
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=20.23 E-value=1.8e+02 Score=29.00 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=43.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCCEEEEcCCCCHHHHHHHHHcCCCeEEeCCCCHHHHHHHHHHHHH
Q 007601 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (596)
Q Consensus 80 pDLVLlDI~MPdmdGleLl~~Ir~~~~ipVIllTa~~d~~~~~eAl~~GA~DYL~KPl~~eeL~~~l~~vlr 151 (596)
.|++++-.. .+.-|..+++.+. ..+|||.... +. ..+.+..|-.+++..|-+.++|.+++..++.
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~-~~---~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRV-GG---IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECC-TT---STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecC-CC---hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 467666433 2334566777763 5678886432 22 2234556778999999999999999988875
No 308
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=20.21 E-value=2.4e+02 Score=24.90 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=37.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 007601 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (596)
Q Consensus 32 ~girVLIVDDd~~i~~~L~~lL~~~~y~V~~a~sg~eALe~L~e~~~~pDLVLlDI 87 (596)
.+.+|.++..... ..+|+..+..+..+.+..++++++.... +|.++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecH
Confidence 3568888777652 3445556788889999999999998754 99999973
Done!