BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007602
         (596 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
           Saccharomyces Cerevisiae
          Length = 296

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 10/231 (4%)

Query: 261 DVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV-----FMHGF 315
           D  LL+FLRAR F V+ A  M +N  +WRK++                       + H  
Sbjct: 52  DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKT 111

Query: 316 DKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGG--IST 373
           DK+G PV +   G     E+ + T   EE+  K L W  + + +       R  G  + T
Sbjct: 112 DKDGRPVYFEELGAVNLHEMNKVT--SEERMLKNLVWEYESVVQYRLPACSRAAGHLVET 169

Query: 374 IVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFL 433
              + DLK     + + +    ++A  + Q+ YPE + K   IN P+ +    R+  PFL
Sbjct: 170 SCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 229

Query: 434 TQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEI 484
              T SK    G S   E LL+ I AE LPVK+GG S+V E      +++I
Sbjct: 230 DPVTVSKIFILGSSYQKE-LLKQIPAENLPVKFGGKSEVDESKGGLYLSDI 279


>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylethanolamine
 pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylinositol
 pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylcholine
 pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylcholine
 pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylcholine Or Phosphatidylinositol
          Length = 320

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 94/227 (41%), Gaps = 24/227 (10%)

Query: 261 DVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV---------- 310
           D  LL+FLRAR F +  +  M   T RWR+E+               +            
Sbjct: 61  DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120

Query: 311 -FMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKR------QKFLRWRIQFLERSIRK 363
            + H  DK+G P+ +   G    K++Y+ T   +  R      + F  +R+    R    
Sbjct: 121 QYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGY 180

Query: 364 LDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYL 423
           L      I T   V DLK       + +    K    + Q+ YPE + K   I+ P+ + 
Sbjct: 181 L------IETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFS 234

Query: 424 AVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLS 470
            + +M+ PFL   T SK    G S   E LL+ I  E LPVKYGG S
Sbjct: 235 TMFKMVKPFLDPVTVSKIFILGSSYKKE-LLKQIPIENLPVKYGGTS 280


>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
           Protein From A Pseudo-Sec14 Scaffold By Directed
           Evolution
          Length = 320

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 94/227 (41%), Gaps = 24/227 (10%)

Query: 261 DVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV---------- 310
           D  LL+FLRAR F +  +  M   T RWR+E+               +            
Sbjct: 61  DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120

Query: 311 -FMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKR------QKFLRWRIQFLERSIRK 363
            + H  DK+G P+ +   G    K++Y+ T   +  R      + F  +R+    R    
Sbjct: 121 QYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGY 180

Query: 364 LDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYL 423
           L      I T   V DLK       + +    K    + Q+ YPE + K   I+ P+ + 
Sbjct: 181 L------IETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFS 234

Query: 424 AVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLS 470
            + +M+ PFL   T SK    G S   E LL+ I  E LPVKYGG S
Sbjct: 235 TMFKMVKPFLDPVTVSKIFILGSSYKKE-LLKQIPIENLPVKYGGTS 280


>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
           Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
           Vitamin E And Cholesterol Biosynthesis
 pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
           Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
           Vitamin E And Cholesterol Biosynthesis
          Length = 403

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 147/343 (42%), Gaps = 41/343 (11%)

Query: 261 DVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV--FMHGFDKE 318
           D  LL++LRAR F ++ +  ML+  + +RK+                + +   M G+D +
Sbjct: 35  DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94

Query: 319 GHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGIS----TI 374
           G PV Y++ G    K L    FS    +Q  LR +++  E  +++   +   +     TI
Sbjct: 95  GCPVWYDIIGPLDAKGL---LFS--ASKQDLLRTKMRECELLLQECAHQTTKLGRKVETI 149

Query: 375 VQVNDLKNSPGPAKWE-LRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFL 433
             + D +       W+   +A  + L + ++NYPE + +   +  P  +     +I PFL
Sbjct: 150 TIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209

Query: 434 TQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGL-----------SKVG-------EF 475
           ++ TR K +  G +   E LL++I+ +Q+PV+YGG            SK+        ++
Sbjct: 210 SEDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKY 268

Query: 476 AATDAVTE-----ITVKPAAKHTVEFPVT-EECHLTWEVRVVGWEVSYGAEFVPSTEGSY 529
              D V +     + +   + H VE+ +    C L W+    G +V +G  F+ +  G  
Sbjct: 269 YVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGI-FLKTKMGER 327

Query: 530 TVIIQKAKKLASNAEQPVVC---DSFKIVEPGKVVLTIDNPTS 569
               +  + L +      +     +    +PG  VL  DN  S
Sbjct: 328 QRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYS 370


>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
           Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
           Vitamin E And Cholesterol Biosynthesis
          Length = 403

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 129/289 (44%), Gaps = 37/289 (12%)

Query: 261 DVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV--FMHGFDKE 318
           D  LL++LRAR F ++ +  ML+  + +RK+                + +   M G+D +
Sbjct: 35  DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94

Query: 319 GHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGIS----TI 374
           G PV Y++ G    K L    FS    +Q  LR +++  E  +++   +   +     TI
Sbjct: 95  GCPVWYDIIGPLDAKGL---LFS--ASKQDLLRTKMRECELLLQECAHQTTKLGRKVETI 149

Query: 375 VQVNDLKNSPGPAKWE-LRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFL 433
             + D +       W+   +A  + L + ++NYPE + +   +  P  +     +I PFL
Sbjct: 150 TIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209

Query: 434 TQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGL-----------SKVG-------EF 475
           ++ TR K +  G +   E LL++I+ +Q+PV+YGG            SK+        ++
Sbjct: 210 SEDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKY 268

Query: 476 AATDAVTE-----ITVKPAAKHTVEFPVT-EECHLTWEVRVVGWEVSYG 518
              D V +     + +   + H VE+ +    C L W+    G +V +G
Sbjct: 269 YVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFG 317


>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
           Cerevisiae Presents Some Novel Features Of Structure
           That Lead To A Surprising "dimer- Monomer" State Change
           Induced By Substrate Binding
 pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
           Cerevisiae Presents Some Novel Features Of Structure
           That Lead To A Surprising "dimer- Monomer" State Change
           Induced By Substrate Binding
          Length = 360

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 35/220 (15%)

Query: 264 LLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV---------FMHG 314
            L++LRA  + +KD    +  T+ WR+EF                 V          + G
Sbjct: 90  FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILG 149

Query: 315 FDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTI 374
           ++ +  P+ Y   G        Q T +   + Q      +  LER I   DF P G  ++
Sbjct: 150 YENDARPILYLKPGR-------QNTKTSHRQVQHL----VFMLERVI---DFMPAGQDSL 195

Query: 375 VQVNDLKNSP------GPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRM 428
             + D K+ P      G +K       K+ L +LQ +YPE + K +  N+PW      ++
Sbjct: 196 ALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKL 255

Query: 429 ISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGG 468
           I PF+   TR K VF  P       ++Y+   +L   YGG
Sbjct: 256 IHPFIDPLTREKLVFDEP------FVKYVPKNELDSLYGG 289


>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
 pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
 pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
          Length = 403

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 142/343 (41%), Gaps = 41/343 (11%)

Query: 261 DVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV--FMHGFDKE 318
           D  LL++LRAR F ++ +   L+  + +RK+                + +     G+D +
Sbjct: 35  DYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGXCGYDLD 94

Query: 319 GHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGIS----TI 374
           G PV Y++ G    K L    FS    +Q  LR + +  E  +++   +   +     TI
Sbjct: 95  GCPVWYDIIGPLDAKGL---LFS--ASKQDLLRTKXRECELLLQECAHQTTKLGRKVETI 149

Query: 375 VQVNDLKNSPGPAKWE-LRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFL 433
             + D +       W+   +A  + L   ++NYPE + +   +  P  +     +I PFL
Sbjct: 150 TIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209

Query: 434 TQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGL-----------SKVG-------EF 475
           ++ TR K    G +   E LL++I+ +Q+PV+YGG            SK+        ++
Sbjct: 210 SEDTRKKIXVLG-ANWKEVLLKHISPDQVPVEYGGTXTDPDGNPKCKSKINYGGDIPRKY 268

Query: 476 AATDAVTE-----ITVKPAAKHTVEFPVT-EECHLTWEVRVVGWEVSYGAEFVPSTEGSY 529
              D V +     + +   + H VE+ +    C L W+    G +V +G  F+ +  G  
Sbjct: 269 YVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFXSDGADVGFGI-FLKTKXGER 327

Query: 530 TVIIQKAKKLASNAEQPVVC---DSFKIVEPGKVVLTIDNPTS 569
               +  + L +      +     +    +PG  VL  DN  S
Sbjct: 328 QRAGEXTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYS 370


>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
           Human Alpha-tocopherol Transfer Protein
 pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
           Human Alpha-Tocopherol Transfer Protein
 pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
           Human Alpha-Tocopherol Transfer Protein
          Length = 278

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 31/244 (12%)

Query: 251 GIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV 310
           G+PL     +D  LL+FLRARDF +  A+ +LKN  +WR E                   
Sbjct: 39  GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKA 98

Query: 311 FMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFL--ERSIRKLDFRP 368
             HG  +   P    V        +Y+    D +    +  +R+  +  E  +++++ + 
Sbjct: 99  GYHGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQR 151

Query: 369 GGISTIVQVNDLKNSPGPAKWELRQA-------TKQALQLLQDNYPEFVAKQVFINVPWW 421
            GI  I    DL+       W+   A        K+   +L D++P  V     IN P  
Sbjct: 152 NGIKAIF---DLEG------WQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVI 202

Query: 422 YLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAV 481
           + AV  MI PFLT++ + +    G +   ++LL++   + LP++YGG     EF+  D  
Sbjct: 203 FHAVFSMIKPFLTEKIKERIHMHG-NNYKQSLLQHF-PDILPLEYGG----EEFSMEDIC 256

Query: 482 TEIT 485
            E T
Sbjct: 257 QEWT 260


>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
           Protein Bound To Its Ligand
          Length = 262

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 31/244 (12%)

Query: 251 GIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV 310
           G+PL     +D  LL+FLRARDF +  A+ +LKN  +WR E                   
Sbjct: 23  GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKA 82

Query: 311 FMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFL--ERSIRKLDFRP 368
             HG  +   P    V        +Y+    D +    +  +R+  +  E  +++++ + 
Sbjct: 83  GYHGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQR 135

Query: 369 GGISTIVQVNDLKNSPGPAKWELRQA-------TKQALQLLQDNYPEFVAKQVFINVPWW 421
            GI  I    DL+       W+   A        K+   +L D++P  V     IN P  
Sbjct: 136 NGIKAIF---DLEG------WQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVI 186

Query: 422 YLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAV 481
           + AV   I PFLT++ + +    G +   ++LL++   + LP++YGG     EF+  D  
Sbjct: 187 FHAVFSXIKPFLTEKIKERIHXHG-NNYKQSLLQHF-PDILPLEYGG----EEFSXEDIC 240

Query: 482 TEIT 485
            E T
Sbjct: 241 QEWT 244


>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
          Length = 316

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 19/216 (8%)

Query: 258 ERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKE----FXXXXXXXXXXXXXXXKTVFMH 313
           E+     L+F+RAR F V  A+ +L+  + +R +    F                   + 
Sbjct: 89  EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLS 148

Query: 314 GFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGIST 373
             DK G  V       +Q++E+   TF +  +   F+      LE+ +   + +  G   
Sbjct: 149 SRDKYGRVVXLFNIENWQSQEI---TFDEILQAYCFI------LEKLLENEETQINGFCI 199

Query: 374 IVQVNDLKNSPGPAKWELRQA-TKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPF 432
           I    + K         LR +  ++ +  LQD++P +     FI+ PW++     ++ PF
Sbjct: 200 I---ENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPF 256

Query: 433 LTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGG 468
           L  +   +    G   S     + I    LP  +GG
Sbjct: 257 LKSKLLERVFVHGDDLSG--FYQEIDENILPSDFGG 290


>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
          Length = 316

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 19/216 (8%)

Query: 258 ERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKE----FXXXXXXXXXXXXXXXKTVFMH 313
           E+     L+F+RAR F V  A+ +L+  + +R +    F                   + 
Sbjct: 89  EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLS 148

Query: 314 GFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGIST 373
             DK G  V       +Q++E+   TF +  +   F+      LE+ +   + +  G   
Sbjct: 149 SRDKYGRVVMLFNIENWQSQEI---TFDEILQAYCFI------LEKLLENEETQINGFCI 199

Query: 374 IVQVNDLKNSPGPAKWELRQA-TKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPF 432
           I    + K         LR +  ++ + +LQD++P       FI+ PW++     ++ PF
Sbjct: 200 I---ENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPF 256

Query: 433 LTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGG 468
           L  +   +    G   S     + I    LP  +GG
Sbjct: 257 LKSKLLERVFVHGDDLSG--FYQEIDENILPSDFGG 290


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,280,318
Number of Sequences: 62578
Number of extensions: 538521
Number of successful extensions: 1144
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 19
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)