Query 007602
Match_columns 596
No_of_seqs 322 out of 1434
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 12:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 2.8E-37 6.1E-42 323.8 18.7 241 227-473 9-260 (317)
2 KOG1470 Phosphatidylinositol t 100.0 2.5E-36 5.3E-41 310.4 16.9 203 257-477 45-249 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 99.9 3.9E-28 8.5E-33 227.9 10.6 151 308-469 7-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 2.5E-25 5.4E-30 208.6 14.4 145 314-471 14-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 6.2E-23 1.3E-27 189.9 13.7 146 310-469 11-157 (157)
6 PF13897 GOLD_2: Golgi-dynamic 99.8 3.6E-19 7.7E-24 160.7 10.1 92 486-579 1-134 (136)
7 PF13716 CRAL_TRIO_2: Divergen 99.4 9.5E-14 2.1E-18 130.0 4.7 141 309-472 3-146 (149)
8 KOG3878 Protein involved in ma 99.3 2.6E-12 5.6E-17 130.7 5.5 96 482-579 322-466 (469)
9 PF03765 CRAL_TRIO_N: CRAL/TRI 98.2 1.8E-06 3.8E-11 67.6 3.9 31 255-285 25-55 (55)
10 KOG4406 CDC42 Rho GTPase-activ 98.1 1.6E-05 3.5E-10 84.6 10.1 126 315-461 89-214 (467)
11 KOG3287 Membrane trafficking p 96.7 0.016 3.4E-07 57.3 11.0 104 461-578 17-126 (236)
12 KOG1693 emp24/gp25L/p24 family 94.5 0.21 4.5E-06 49.0 8.8 75 495-581 37-117 (209)
13 KOG1692 Putative cargo transpo 93.5 0.27 5.8E-06 48.0 7.5 57 514-582 56-114 (201)
14 PF01105 EMP24_GP25L: emp24/gp 84.8 0.28 6.1E-06 46.5 0.0 89 484-581 4-99 (183)
15 smart00110 C1Q Complement comp 61.0 23 0.00049 32.9 6.1 19 548-566 41-59 (135)
16 KOG1534 Putative transcription 48.8 29 0.00063 35.1 4.8 105 353-461 75-193 (273)
17 PF14555 UBA_4: UBA-like domai 48.1 25 0.00055 25.8 3.4 24 260-283 14-37 (43)
18 PF09394 Inhibitor_I42: Chagas 47.8 1E+02 0.0022 25.9 7.6 86 484-580 1-92 (92)
19 PF00386 C1q: C1q domain; Int 36.1 31 0.00068 31.0 2.8 28 548-575 35-62 (127)
20 PF14213 DUF4325: Domain of un 33.8 1.1E+02 0.0023 25.1 5.4 46 376-425 20-67 (74)
21 PF02845 CUE: CUE domain; Int 25.1 1.2E+02 0.0025 22.1 3.7 25 259-283 15-39 (42)
22 TIGR03769 P_ac_wall_RPT actino 24.8 69 0.0015 23.6 2.4 19 549-567 4-22 (41)
23 PF03641 Lysine_decarbox: Poss 24.8 1.6E+02 0.0035 26.9 5.5 43 412-457 86-133 (133)
24 PF09507 CDC27: DNA polymerase 22.9 1E+02 0.0022 33.6 4.4 48 265-321 5-53 (430)
25 KOG4439 RNA polymerase II tran 22.5 74 0.0016 37.5 3.2 48 243-290 488-553 (901)
26 TIGR02364 dha_pts dihydroxyace 22.4 2.8E+02 0.006 25.4 6.5 50 372-432 60-109 (125)
27 smart00165 UBA Ubiquitin assoc 22.0 1.4E+02 0.0029 20.7 3.4 23 260-282 14-36 (37)
28 PF00627 UBA: UBA/TS-N domain; 21.4 1.4E+02 0.0031 20.9 3.5 23 260-282 15-37 (37)
29 smart00546 CUE Domain that may 20.8 1.7E+02 0.0036 21.3 3.8 25 259-283 16-40 (43)
30 PF12306 PixA: Inclusion body 20.0 1.1E+02 0.0025 29.5 3.6 34 488-521 52-85 (172)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=323.80 Aligned_cols=241 Identities=32% Similarity=0.488 Sum_probs=200.1
Q ss_pred ccccccccCCCCCCCCChHHHH-hcCCCCCCC-CCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCC-ccc
Q 007602 227 VTSENESKDTKTEPEMGPEEVY-IWGIPLLAD-ERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQ-DLG 303 (596)
Q Consensus 227 ~~~~~el~e~~~~~~~~~~~l~-~W~~Pll~~-~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~~~id~i~~~-~i~ 303 (596)
..+..++.+.+....+.+..++ +|++|+++. ..+|.+||||||||+||+++|.+||.+++.||.+++++.|... ...
T Consensus 9 ~~~~~~~~~~~~~~~~~i~~lr~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~ 88 (317)
T KOG1471|consen 9 KVAKEELNEITESEEAVIAQLRWLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEED 88 (317)
T ss_pred cccccccCCCcHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccc
Confidence 3456667777777888899998 779999995 8899999999999999999999999999999999999988765 222
Q ss_pred ccccc--eeeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCeEEEEE
Q 007602 304 DDLDK--TVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKL-----DFRPGGISTIVQ 376 (596)
Q Consensus 304 ~el~k--~~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l-----~~~~~~i~~iv~ 376 (596)
..+.+ ...++|.|+.|+||++.+.|..|.++++..+. ..+++++.+.-+|+.+..+ .....+++|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~-----~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~ 163 (317)
T KOG1471|consen 89 DELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTG-----SLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVT 163 (317)
T ss_pred hhhhhhccccccccCCCCCEEEEeccCCCCcccceeecc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEE
Confidence 33333 24688999999999999999999999987653 3566666666666654221 122467999999
Q ss_pred EEeCCCCCCCCcc-hHHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHh
Q 007602 377 VNDLKNSPGPAKW-ELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLR 455 (596)
Q Consensus 377 IiDlkg~sgl~~~-~l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k 455 (596)
|+||+|+++.... ..+..++.++.++|+|||++++++||||+|++|+++|++++|||+++|++||+++++ ++.++|++
T Consensus 164 I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~-~~~~~L~k 242 (317)
T KOG1471|consen 164 IFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHS-KDKESLLK 242 (317)
T ss_pred EEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCC-Cchhhhhh
Confidence 9999998633221 236679999999999999999999999999999999999999999999999994433 58999999
Q ss_pred hcCcCCccccCCCCCCCC
Q 007602 456 YIAAEQLPVKYGGLSKVG 473 (596)
Q Consensus 456 ~Id~e~LP~eyGG~~~~~ 473 (596)
+|++++||.+|||++.+.
T Consensus 243 ~i~~~~LP~~yGG~~~~~ 260 (317)
T KOG1471|consen 243 YIPPEVLPEEYGGTCGDL 260 (317)
T ss_pred hCCHhhCccccCCCcccc
Confidence 999999999999999985
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=310.41 Aligned_cols=203 Identities=33% Similarity=0.574 Sum_probs=174.7
Q ss_pred CCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCC-CCCCcccccc-cceeeeeccCCCCCeEEEEEcCCcChhh
Q 007602 257 DERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDD-LIGQDLGDDL-DKTVFMHGFDKEGHPVCYNVYGEFQNKE 334 (596)
Q Consensus 257 ~~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~~~id~-i~~~~i~~el-~k~~~~~G~Dk~GrPVi~~~~g~~d~~~ 334 (596)
.+++|.+||||||||+||+.+|.+||.++|.||+.+++.. +..+++..++ .|..|++|+|++||||+|+++......
T Consensus 45 ~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn- 123 (324)
T KOG1470|consen 45 KWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQN- 123 (324)
T ss_pred hcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCCC-
Confidence 3569999999999999999999999999999999999887 5555554444 478899999999999999966532222
Q ss_pred hhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhccccccceEE
Q 007602 335 LYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQV 414 (596)
Q Consensus 335 l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~iv~IiDlkg~sgl~~~~l~~~lk~il~llq~~YPErL~~I~ 414 (596)
+. +...+.|+++|+||.++..| +.++.++++++|++|++ +++++ .++.+.++.+||+|||+||+.++
T Consensus 124 ----~~----t~~~~~r~~Vy~mE~Ai~~l---p~~qe~~~~L~D~~~fs-~sN~d-~~~~k~~~~~lq~hYPErLg~a~ 190 (324)
T KOG1470|consen 124 ----TK----TQKELERLLVYTLENAILFL---PPGQEQFVWLFDLTGFS-MSNPD-IKFLKELLHILQDHYPERLGKAL 190 (324)
T ss_pred ----CC----CHHHHHHHHHHHHHHHHHhC---CCCcceEEEEEecccCc-ccCCC-cHHHHHHHHHHHHhChHHhhhhh
Confidence 11 35789999999999998655 67889999999999995 77777 78899999999999999999999
Q ss_pred EEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCccccCCCCCCCCCCcc
Q 007602 415 FINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAA 477 (596)
Q Consensus 415 IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~LP~eyGG~~~~~df~~ 477 (596)
|+|+||+|..+|++++|||++.|++||.|+.+ .+.|.+|||+++||..|||+.... |..
T Consensus 191 l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~---~~~l~~~~d~~~l~s~~GG~~~~~-y~~ 249 (324)
T KOG1470|consen 191 LVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP---KDDLSEYFDESQLPSLFGGKLLFE-YTH 249 (324)
T ss_pred hcCChHHHHHHHHHhhhccChhhhceeEEecC---hhHHHhhCCccccchhhCCCcccc-cCC
Confidence 99999999999999999999999999999975 455999999999999999965543 543
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.95 E-value=3.9e-28 Score=227.92 Aligned_cols=151 Identities=36% Similarity=0.664 Sum_probs=122.3
Q ss_pred ceeeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCCCCC
Q 007602 308 KTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPA 387 (596)
Q Consensus 308 k~~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~iv~IiDlkg~sgl~ 387 (596)
+..+++|+|++||||+|+++|++|+..+ ...+++++.++++|.+++.+.. .++++++++|+|++|++ ++
T Consensus 7 ~~~~~~g~D~~gr~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~E~~~~~~~~-~~~~~~~~~iiD~~g~~-~~ 75 (159)
T PF00650_consen 7 GPFYLHGRDKDGRPVIYIRLGRFDPKKF---------SPEDVIRFFVYLLERMLKRMPE-GGQVEGIVVIIDLSGFS-LS 75 (159)
T ss_dssp SCEEEEEE-TTS-EEEEEEGTT--HHTS----------HHHHHHHHHHHHHHHHHTHHH-TSHHH-EEEEEE-TT---HH
T ss_pred eeEEECCCCCCcCEEEEEEcccCCCCcC---------CHHHHHHHHHHHHHHHHhhhcc-cccceeEEEEEeCCCce-Ee
Confidence 4578999999999999999999998854 3579999999999999865543 46789999999999875 33
Q ss_pred cch--HHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCcccc
Q 007602 388 KWE--LRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVK 465 (596)
Q Consensus 388 ~~~--l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~LP~e 465 (596)
+.. ..++++.++.+++++||+|++++||||+|++|.++|+++++||+++|++||+|+++.++.+.|.++||+++||.+
T Consensus 76 ~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~ 155 (159)
T PF00650_consen 76 NFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVE 155 (159)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGG
T ss_pred ccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchh
Confidence 222 156789999999999999999999999999999999999999999999999999776676899999999999999
Q ss_pred CCCC
Q 007602 466 YGGL 469 (596)
Q Consensus 466 yGG~ 469 (596)
|||+
T Consensus 156 ~GG~ 159 (159)
T PF00650_consen 156 YGGT 159 (159)
T ss_dssp GTSS
T ss_pred cCCC
Confidence 9996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.93 E-value=2.5e-25 Score=208.65 Aligned_cols=145 Identities=36% Similarity=0.664 Sum_probs=128.8
Q ss_pred ccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCCCCCcchHHH
Q 007602 314 GFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQ 393 (596)
Q Consensus 314 G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~iv~IiDlkg~sgl~~~~l~~ 393 (596)
|+|++||||+|+++|+++.... ...++++++++++|.+++. ...+.++.++++|+|++|++ +.+.. ++
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~---------~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~i~D~~~~~-~~~~~-~~ 81 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSV---------TLEELLRYLVYVLEKILQR-EKKTGGIEGFTVIFDLKGLS-MSNPD-LS 81 (158)
T ss_pred CCCCCcCEEEEEeccccccCcC---------CHHHHHHHHHHHHHHHHHH-HhcCCCeeeEEEEEECCCCC-ccccc-HH
Confidence 6999999999999999886543 3689999999999999864 22367789999999999986 44444 67
Q ss_pred HHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCccccCCCCCC
Q 007602 394 ATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSK 471 (596)
Q Consensus 394 ~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~LP~eyGG~~~ 471 (596)
+++.++.+++++||++++++||||+|+++.++|+++++||++++++||+++++ ++.+.|.++||+++||.+|||++.
T Consensus 82 ~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~-~~~~~L~~~i~~~~lP~~~GG~~~ 158 (158)
T smart00516 82 VLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGN-DSKEELLEYIDPEQLPEELGGTLD 158 (158)
T ss_pred HHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCC-CCHHHHHhhCCHhhCcHhhCCCCC
Confidence 89999999999999999999999999999999999999999999999999986 468899999999999999999863
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.89 E-value=6.2e-23 Score=189.86 Aligned_cols=146 Identities=35% Similarity=0.585 Sum_probs=123.9
Q ss_pred eeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCCCCCcc
Q 007602 310 VFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKW 389 (596)
Q Consensus 310 ~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~iv~IiDlkg~sgl~~~ 389 (596)
.+..|.|++||||++.++++.+....+ ...+++++.++.+|.+++.... ..+++++|+|++|.+ +.+.
T Consensus 11 ~~~~~~D~~gr~V~~~~~~~~~~~~~~--------~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~i~D~~~~~-~~~~ 78 (157)
T cd00170 11 GYLGGRDKEGRPVLIIRAGNKDLSKSL--------DSEELLRYLVYTLEKLLQEDDE---QVEGFVVIIDLKGLS-LSHL 78 (157)
T ss_pred cccCCCCCCcCEEEEEecCCcchhhcC--------CHHHHHHHHHHHHHHHHhhhhh---cccceEEEEECCCCC-hhcc
Confidence 344456999999999999976665442 1278999999999999875532 236899999999986 4333
Q ss_pred h-HHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCccccCCC
Q 007602 390 E-LRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGG 468 (596)
Q Consensus 390 ~-l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~LP~eyGG 468 (596)
. ..+.++.++.+++++||++++++||||+|++|.++|+++++|+++++++||++++++ .+.|.++|++++||.+|||
T Consensus 79 ~~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~--~~~L~~~i~~~~Lp~~~GG 156 (157)
T cd00170 79 LPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD--KEELLKYIDKEQLPEEYGG 156 (157)
T ss_pred chhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC--HHHHHhhCChhhCcHhhCC
Confidence 1 357799999999999999999999999999999999999999999999999999752 7899999999999999999
Q ss_pred C
Q 007602 469 L 469 (596)
Q Consensus 469 ~ 469 (596)
+
T Consensus 157 ~ 157 (157)
T cd00170 157 T 157 (157)
T ss_pred C
Confidence 5
No 6
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=99.79 E-value=3.6e-19 Score=160.72 Aligned_cols=92 Identities=29% Similarity=0.408 Sum_probs=77.7
Q ss_pred cCCCCceEEEEeeCC-CceeeeEEEEeeceeeeeeEec---c-CC-----------C------------------C----
Q 007602 486 VKPAAKHTVEFPVTE-ECHLTWEVRVVGWEVSYGAEFV---P-ST-----------E------------------G---- 527 (596)
Q Consensus 486 Vk~gs~~~Vei~V~e-gs~L~WeF~v~~~DI~FgV~f~---~-~~-----------~------------------~---- 527 (596)
|++|...+|.++..+ |..|+|+|.|+++|||||++|. + +. + |
T Consensus 1 v~~Ge~~tvrVpt~~~G~~l~WeFaTd~yDIgFG~~few~~~~s~~vsv~vses~de~~~~~~~~~~~~~~~ve~gs~~~ 80 (136)
T PF13897_consen 1 VGRGETVTVRVPTHPEGKCLFWEFATDSYDIGFGVYFEWTPPTSNQVSVHVSESSDEEDEEEEEEEDSESGDVEKGSERS 80 (136)
T ss_pred CCcCcEEEEEcccCCCCCEEEEEEeeCCCCceEEEEEEecCCCCCceeEecccCccccccccccccccCccchhcccccc
Confidence 578888888888875 8999999999999999999994 0 00 0 0
Q ss_pred --CceEEEecceeccCCCCCCcccceEEeCcCcEEEEEEECCCC--CCceEEEEEE
Q 007602 528 --SYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS--KKKKLLYRLK 579 (596)
Q Consensus 528 --~~~~iV~~~~kv~s~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~ 579 (596)
+....|.|..|+.|| ..+ +.|++.|+.+|+|+|.|||||| |+|+|+|+|-
T Consensus 81 ~~~~~~eviPv~R~dsH-~~~-~~Gs~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V~ 134 (136)
T PF13897_consen 81 SRPEMDEVIPVYRRDSH-LEV-EAGSHTCPGPGVYVLKFDNSYSWFRSKKLYYRVY 134 (136)
T ss_pred CCCCeeEEeEeeeeecC-cce-eceEEECCCCeEEEEEeeCcceeEEeeEEEEEEE
Confidence 023577888999999 877 8999999999999999999999 9999999984
No 7
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.42 E-value=9.5e-14 Score=129.99 Aligned_cols=141 Identities=21% Similarity=0.300 Sum_probs=92.4
Q ss_pred eeeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHH-HHHHHHhccCCCCeEEEEEEEeCCCCCCCC
Q 007602 309 TVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFL-ERSIRKLDFRPGGISTIVQVNDLKNSPGPA 387 (596)
Q Consensus 309 ~~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~ll-E~~l~~l~~~~~~i~~iv~IiDlkg~sgl~ 387 (596)
.++..|+|++||||+++...++ +... ....++.|++..+ +.. ...++++|+|+++.+. .
T Consensus 3 ~~~~gG~d~~g~pV~~~~~~~~-~~~~---------~~~~ll~yl~~~l~~~~---------~~~~f~vVid~~~~~~-~ 62 (149)
T PF13716_consen 3 FFYPGGRDREGRPVVVFIASRL-PSSD---------DLERLLLYLLSTLSEEV---------VDKPFSVVIDHTGFSR-S 62 (149)
T ss_dssp E-EEEEEBTTS-EEEEEEGGG--C-TT---------HHHHHHHHHHHHH-TTT---------TTS-EEEEEE-TT--G-G
T ss_pred EEEecccCCCcCEEEEEECCcC-cchh---------hHHHHHHHHHHhhhHHh---------cCCCEEEEEEcCCCcc-c
Confidence 3467789999999999886665 2111 2345555554444 221 1235899999998742 2
Q ss_pred cchHHHHHHHHHHHhhhccccccceEEEEeCChhHHHHH-HhhcccCChhh-hccEEEeCCCcchHHHHhhcCcCCcccc
Q 007602 388 KWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVN-RMISPFLTQRT-RSKFVFAGPSKSAETLLRYIAAEQLPVK 465 (596)
Q Consensus 388 ~~~l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw-~lVkpfLsekt-r~KI~~~~~~~~~e~L~k~Id~e~LP~e 465 (596)
+..-+..++++..++...|+..|+++||||+.++++.++ .+.+++++.+. ..||+++. +..+|.+|||+++||..
T Consensus 63 ~~~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~---sl~~L~~~i~~~qL~~~ 139 (149)
T PF13716_consen 63 SEPSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVS---SLSELSKHIDPSQLPES 139 (149)
T ss_dssp G---HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEES---STCGGGGTSGGGG----
T ss_pred cCCchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEEC---CHHHHHhhCCHHHhccc
Confidence 222388899999999999999999999999999999999 66677778888 99999995 57899999999999999
Q ss_pred CCCCCCC
Q 007602 466 YGGLSKV 472 (596)
Q Consensus 466 yGG~~~~ 472 (596)
+||....
T Consensus 140 lp~~~~~ 146 (149)
T PF13716_consen 140 LPGVLQY 146 (149)
T ss_dssp --HHH--
T ss_pred CCCEEec
Confidence 9997654
No 8
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.6e-12 Score=130.70 Aligned_cols=96 Identities=28% Similarity=0.399 Sum_probs=77.1
Q ss_pred cccccCCCCceEEEEeeCC-CceeeeEEEEeeceeeeeeEec---c------------CCC--------------CC---
Q 007602 482 TEITVKPAAKHTVEFPVTE-ECHLTWEVRVVGWEVSYGAEFV---P------------STE--------------GS--- 528 (596)
Q Consensus 482 ~~v~Vk~gs~~~Vei~V~e-gs~L~WeF~v~~~DI~FgV~f~---~------------~~~--------------~~--- 528 (596)
..|+|+.|..-+|.++..+ |+.|.|+|.|+++||||||+|. | +++ |+
T Consensus 322 gvItvGhGetVTVRVPThenGsclFWEFATD~YDIGFGvYFEWt~~~~n~VsVHVSeSddded~~~~~e~E~~e~G~~~~ 401 (469)
T KOG3878|consen 322 GVITVGHGETVTVRVPTHENGSCLFWEFATDSYDIGFGVYFEWTKPVTNEVSVHVSESDDDEDCVYLSETEDLESGSLSQ 401 (469)
T ss_pred CeEEecCCceEEEeccccCCCceEEEEeccccccccceEEEEeecCCCceeEEEecccccchhhhhhhhhhhhhcCCchh
Confidence 3588999999999888875 8999999999999999999994 1 000 00
Q ss_pred --------------ceEEEecceeccCCCCCCcccceEEeCcCcEEEEEEECCCC--CCceEEEEEE
Q 007602 529 --------------YTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS--KKKKLLYRLK 579 (596)
Q Consensus 529 --------------~~~iV~~~~kv~s~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~ 579 (596)
...+|.|.-|..|| ... -.||+..+.-|.|.|.|||||| |||.|.||+-
T Consensus 402 E~gA~~n~~~anKp~~deIvPvYRRdCh-eEV-YaGSH~YPGrGvYLLKFDNSYSlWRsKtlYYRVY 466 (469)
T KOG3878|consen 402 ERGAVNNPTAANKPPIDEIVPVYRRDCH-EEV-YAGSHSYPGRGVYLLKFDNSYSLWRSKTLYYRVY 466 (469)
T ss_pred hhhhhcCCCCCCCCCcccccchhhhhhh-HHh-hcccccCCCCceEEEEecchhhhhcccceEEEEE
Confidence 01245566677888 543 6899999999999999999999 9999999974
No 9
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.17 E-value=1.8e-06 Score=67.59 Aligned_cols=31 Identities=52% Similarity=0.835 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHhHhcCCCHHHHHHHHHHH
Q 007602 255 LADERSDVILLKFLRARDFKVKDAFTMLKNT 285 (596)
Q Consensus 255 l~~~~tD~~LLRFLRArkfdVekA~~~L~~~ 285 (596)
.....+|.+||||||||+||+++|..||++|
T Consensus 25 ~~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 25 EKEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 3456699999999999999999999999875
No 10
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=1.6e-05 Score=84.58 Aligned_cols=126 Identities=11% Similarity=0.203 Sum_probs=92.1
Q ss_pred cCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCCCCCcchHHHH
Q 007602 315 FDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQA 394 (596)
Q Consensus 315 ~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~iv~IiDlkg~sgl~~~~l~~~ 394 (596)
.|+.||.|+++...++....-+ .-..++++.++.+++.++.- ++.++=-.|.+ ..++.-+++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~el--------d~~~li~~~v~~id~~Ve~D---------Yt~vYfh~gl~-s~nkp~l~~ 150 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSEL--------DDIRLISYLVYTIDKYVEND---------YTLVYFHHGLP-SDNKPYLQL 150 (467)
T ss_pred ccccCCeeEEEEEecCCchhhh--------hhHHHHHHHHHHHHHHHhcc---------ceeeehhcCCc-ccccchHHH
Confidence 5999999999888877654321 12348999999999988521 23332223332 233333555
Q ss_pred HHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCC
Q 007602 395 TKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQ 461 (596)
Q Consensus 395 lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~ 461 (596)
+.....-+..+|--.++.+|+|.+-||.+++|++++||++.+.++||+.++ +.++|.++|.-+.
T Consensus 151 l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n---~lseL~~~l~l~r 214 (467)
T KOG4406|consen 151 LFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN---SLSELFEALKLNR 214 (467)
T ss_pred HHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee---hHHHHHHhhhhhh
Confidence 555555566678888999999999999999999999999999999999995 7889999886443
No 11
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.016 Score=57.26 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=65.8
Q ss_pred CccccCCCCCCCCCCccCccccccccCCCCceEEEEeeCCCceeeeEEEEee----ceeeeeeEeccCCCCCceEEEecc
Q 007602 461 QLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVG----WEVSYGAEFVPSTEGSYTVIIQKA 536 (596)
Q Consensus 461 ~LP~eyGG~~~~~df~~~d~~~~v~Vk~gs~~~Vei~V~egs~L~WeF~v~~----~DI~FgV~f~~~~~~~~~~iV~~~ 536 (596)
.+|...+|-..+.. ..|.-=.+.|.+|++.-.-=++..|.+|.-++.+.+ .||+|.+.- | .| .++++..
T Consensus 17 ~~~~~l~ga~g~~p--a~d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G~GDl~i~Ftl~~-P--~G--~~lv~~q 89 (236)
T KOG3287|consen 17 SPPVELLGAAGDQP--ADDYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDGAGDLDIDFTLLN-P--AG--EVLVSDQ 89 (236)
T ss_pred ccceecccccCCCc--ccccceEEEecCCCceeeeeeccCCeEEEEEEEEEecCCccceeeEEeC-C--Cc--cEEeecc
Confidence 44666666433321 011112577889988887777888888888887763 378888862 2 22 2445554
Q ss_pred eeccCCCCCCcccceEEeCcCcEEEEEEECCCC--CCceEEEEE
Q 007602 537 KKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS--KKKKLLYRL 578 (596)
Q Consensus 537 ~kv~s~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i 578 (596)
++.... -.+...++|.|.+.|||++| .+|.|.+.+
T Consensus 90 ~k~dg~-------ht~e~~e~GdY~~CfDNsFS~fs~K~Vffel 126 (236)
T KOG3287|consen 90 RKVDGV-------HTVEVTETGDYQVCFDNSFSTFSRKLVFFEL 126 (236)
T ss_pred cccCce-------eEeeccCCcceEEEEcCccccccceEEEEEE
Confidence 433221 13446789999999999999 555566665
No 12
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.21 Score=49.02 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=48.0
Q ss_pred EEeeCC-CceeeeEEEEe---eceeeeeeEeccCCCCCceEEEecceeccCCCCCCcccceEEeCcCcEEEEEEECCCC-
Q 007602 495 EFPVTE-ECHLTWEVRVV---GWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS- 569 (596)
Q Consensus 495 ei~V~e-gs~L~WeF~v~---~~DI~FgV~f~~~~~~~~~~iV~~~~kv~s~~~~p~~~Gs~~~~epG~yvL~fDNs~S- 569 (596)
-..+.. ++++..+|.|. +.||+|-|. .|+ |..+.-.+.+++++. .|+....|+|.+.|+|.+|
T Consensus 37 Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~-aPd---gkvI~~~~kk~~~~~--------~f~ae~~G~Y~fCFsN~fst 104 (209)
T KOG1693|consen 37 YEDLKKDDDTTSFEFQVQTGGHFDVDYDIE-APD---GKVIYSEKKKRYDSF--------LFKAEGKGEYTFCFSNEFST 104 (209)
T ss_pred eeecccCCceEEEEEEEEeCCceeeEEEEE-CCC---CCEEeeccccccccE--------EEEEecceEEEEEecCcccc
Confidence 334443 45677777776 238888886 343 322223333444433 6889999999999999999
Q ss_pred CCceEEEE-EEEc
Q 007602 570 KKKKLLYR-LKTK 581 (596)
Q Consensus 570 ~sKkl~Y~-i~v~ 581 (596)
.++|+-|- .++.
T Consensus 105 f~~Kiv~~~~q~~ 117 (209)
T KOG1693|consen 105 FSHKIVYMDFQVG 117 (209)
T ss_pred ccceEeeehhhhc
Confidence 77776664 5553
No 13
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=0.27 Score=47.98 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=40.8
Q ss_pred eeeeeeEeccCCCCCceEEEecceeccCCCCCCcccceEEeCcCcEEEEEEECCCC--CCceEEEEEEEcc
Q 007602 514 EVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS--KKKKLLYRLKTKP 582 (596)
Q Consensus 514 DI~FgV~f~~~~~~~~~~iV~~~~kv~s~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~v~~ 582 (596)
||+|.|+ .|+ | .+|.+.++-++. .=+|+++.+|+|.+.|+|.+| .+|.|.+.|++--
T Consensus 56 ~vd~~I~-gP~--~---~~i~~~~~~ssg------k~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~ 114 (201)
T KOG1692|consen 56 GVDVEIT-GPD--G---KIIHKGKRESSG------KYTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGH 114 (201)
T ss_pred ceeEEEE-CCC--C---chhhhcccccCc------eEEEEecCCceEEEEecCCCCCCCceEEEEEEEEee
Confidence 5666665 232 1 234444433332 447889999999999999999 9999999999853
No 14
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=84.81 E-value=0.28 Score=46.46 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred cccCCCCceEEEEeeCCCceeeeEEEEeece----eeeeeEeccCCCCCceEEEecceeccCCCCCCcccceEEeCcCcE
Q 007602 484 ITVKPAAKHTVEFPVTEECHLTWEVRVVGWE----VSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGK 559 (596)
Q Consensus 484 v~Vk~gs~~~Vei~V~egs~L~WeF~v~~~D----I~FgV~f~~~~~~~~~~iV~~~~kv~s~~~~p~~~Gs~~~~epG~ 559 (596)
+.|.+|...-+...+..|..+...|++.+++ |.|.|. .|+..+ ..++........+ .=+|.+.++|.
T Consensus 4 f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~-~~~~~~--~~i~~~~~~~~~~------~f~f~~~~~G~ 74 (183)
T PF01105_consen 4 FELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIR-DPDPNG--EVIYSKSDKESEG------SFSFTAKESGE 74 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEE-ecccCC--ceeeeecccccCC------cEEEEeccCCC
Confidence 4567777777777777788888887776443 555554 122212 1222221111100 23677889999
Q ss_pred EEEEEECCCCC--C-ceEEEEEEEc
Q 007602 560 VVLTIDNPTSK--K-KKLLYRLKTK 581 (596)
Q Consensus 560 yvL~fDNs~S~--s-Kkl~Y~i~v~ 581 (596)
|.+.|+|+.++ . +.+.+.+.+.
T Consensus 75 y~iCf~n~~~~~~~~~~v~~~~~~~ 99 (183)
T PF01105_consen 75 YQICFDNSSSSFSPSKRVSFDIDVG 99 (183)
T ss_dssp -------------------------
T ss_pred EEEEEEcCCCCccccEEEEEEEEEe
Confidence 99999999883 3 7888888774
No 15
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=60.97 E-value=23 Score=32.91 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=17.5
Q ss_pred ccceEEeCcCcEEEEEEEC
Q 007602 548 VCDSFKIVEPGKVVLTIDN 566 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDN 566 (596)
..|.|+|+-||.|.++|.=
T Consensus 41 ~TG~Ftcpv~GvY~F~f~~ 59 (135)
T smart00110 41 RTGKFTCPVPGVYYFSYHV 59 (135)
T ss_pred CCCEEECeeceEEEEEEEE
Confidence 6899999999999999983
No 16
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=48.81 E-value=29 Score=35.12 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhccC---CCCeEEEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhccccccceEEEEeCChh------HH
Q 007602 353 RIQFLERSIRKLDFR---PGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWW------YL 423 (596)
Q Consensus 353 ~i~llE~~l~~l~~~---~~~i~~iv~IiDlkg~sgl~~~~l~~~lk~il~llq~~YPErL~~I~IINaP~~------f~ 423 (596)
++|+||+.+..++.. .+....=.+|+||-|-- --..| ..++++++.-++. .--++..+|++..+++ |+
T Consensus 75 Lv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQI-ELytH-~pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiS 151 (273)
T KOG1534|consen 75 LVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQI-ELYTH-LPVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFIS 151 (273)
T ss_pred chhHHHHHHHHHHHHHhhccCccCCEEEEeCCCee-EEeec-ChhHHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHH
Confidence 467888887655432 34455667899997531 01122 4467788877777 4446777777777754 44
Q ss_pred HHHHhhccc----CCh-hhhccEEEeCCCcchHHHHhhcCcCC
Q 007602 424 AVNRMISPF----LTQ-RTRSKFVFAGPSKSAETLLRYIAAEQ 461 (596)
Q Consensus 424 ~iw~lVkpf----Lse-ktr~KI~~~~~~~~~e~L~k~Id~e~ 461 (596)
.+...++.+ ++. +..+|.-++++ .++..|.++++++.
T Consensus 152 G~lsAlsAMi~lE~P~INvlsKMDLlk~-~~k~~l~~Fl~~d~ 193 (273)
T KOG1534|consen 152 GCLSALSAMISLEVPHINVLSKMDLLKD-KNKKELERFLNPDE 193 (273)
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHhhh-hhHHHHHHhcCCch
Confidence 333333322 222 44566666654 46677777777543
No 17
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=48.14 E-value=25 Score=25.83 Aligned_cols=24 Identities=13% Similarity=0.372 Sum_probs=20.3
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHHH
Q 007602 260 SDVILLKFLRARDFKVKDAFTMLK 283 (596)
Q Consensus 260 tD~~LLRFLRArkfdVekA~~~L~ 283 (596)
++.....||..++||++.|+..+-
T Consensus 14 ~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 668889999999999999998764
No 18
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=47.79 E-value=1e+02 Score=25.93 Aligned_cols=86 Identities=17% Similarity=0.306 Sum_probs=48.8
Q ss_pred cccCCCCceEEEEeeCCCceeeeEEEEeeceeee-eeEeccCCCCCceEEEecceeccCCCCCCcccceEEeCcCcEEEE
Q 007602 484 ITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSY-GAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVL 562 (596)
Q Consensus 484 v~Vk~gs~~~Vei~V~egs~L~WeF~v~~~DI~F-gV~f~~~~~~~~~~iV~~~~kv~s~~~~p~~~Gs~~~~epG~yvL 562 (596)
|+++.|....|.++-..+.-..|.+.....-+.+ +-.|.|...+.. .++.. -...=.|++..+|+..|
T Consensus 1 I~v~~g~~~~I~L~~npstGY~W~~~~~~~~l~l~~~~~~~~~~~~~--------~vG~~---g~~~f~f~a~~~G~~~i 69 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPSTGYSWSLSSDSDGLQLVSEEYIPDNSPSG--------LVGAP---GTRTFTFKALKPGTTTI 69 (92)
T ss_dssp -EEETTSEEEEEEEEBCCGTBEEEECTSTTTEEEEEEEEEESSTSST--------SSTSS---EEEEEEEEESSSEEEEE
T ss_pred CeecCCCEEEEEECCCCCCCeEEEEecCCCeEEEcCCcEEeCCCCcC--------CCCCC---cEEEEEEEEecCeeEEE
Confidence 4578888888888887777789987652222222 222222211100 11111 01122688999999999
Q ss_pred EEECCCC-----CCceEEEEEEE
Q 007602 563 TIDNPTS-----KKKKLLYRLKT 580 (596)
Q Consensus 563 ~fDNs~S-----~sKkl~Y~i~v 580 (596)
.|.+..+ ..+++.|.+.|
T Consensus 70 ~~~y~r~we~~~~~~~~~~~V~V 92 (92)
T PF09394_consen 70 KFEYRRPWEKGSPIKTFTITVTV 92 (92)
T ss_dssp EEEEEBTTTBSTTSEEEEEEEEE
T ss_pred EEEEECcCCCCCccEEEEEEEEC
Confidence 9988655 22456666654
No 19
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=36.12 E-value=31 Score=31.02 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=19.0
Q ss_pred ccceEEeCcCcEEEEEEECCCCCCceEE
Q 007602 548 VCDSFKIVEPGKVVLTIDNPTSKKKKLL 575 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDNs~S~sKkl~ 575 (596)
..|.|+|+.+|+|.+.|.=..+..+.+.
T Consensus 35 ~tG~Ftap~~G~Y~F~~~~~~~~~~~~~ 62 (127)
T PF00386_consen 35 STGIFTAPVPGVYFFSFTIMTSSGSSVW 62 (127)
T ss_dssp TTTEEE-SS-EEEEEEEEEESEEEEEEE
T ss_pred ecCEEecCCCCEEEEEEEEeccCCchhH
Confidence 5899999999999999975533333343
No 20
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=33.76 E-value=1.1e+02 Score=25.14 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=29.5
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhccc--cccceEEEEeCChhHHHH
Q 007602 376 QVNDLKNSPGPAKWELRQATKQALQLLQDNYP--EFVAKQVFINVPWWYLAV 425 (596)
Q Consensus 376 ~IiDlkg~sgl~~~~l~~~lk~il~llq~~YP--ErL~~I~IINaP~~f~~i 425 (596)
+++|+.|+.+++ .+++-.++..|...|+ ..-.++.++|+......+
T Consensus 20 V~lDF~gv~~~~----ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~ 67 (74)
T PF14213_consen 20 VVLDFEGVESIT----SSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEM 67 (74)
T ss_pred EEEECCCccccc----HHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHH
Confidence 779999986554 3345555555555555 566778888886554443
No 21
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=25.08 E-value=1.2e+02 Score=22.05 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.3
Q ss_pred CCHHHHHHHhHhcCCCHHHHHHHHH
Q 007602 259 RSDVILLKFLRARDFKVKDAFTMLK 283 (596)
Q Consensus 259 ~tD~~LLRFLRArkfdVekA~~~L~ 283 (596)
.+...+.+-|+++++|++.|..+|-
T Consensus 15 ~~~~~I~~~L~~~~~~ve~ai~~LL 39 (42)
T PF02845_consen 15 LDREVIEAVLQANNGDVEAAIDALL 39 (42)
T ss_dssp S-HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678889999999999999999874
No 22
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=24.81 E-value=69 Score=23.61 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=15.5
Q ss_pred cceEEeCcCcEEEEEEECC
Q 007602 549 CDSFKIVEPGKVVLTIDNP 567 (596)
Q Consensus 549 ~Gs~~~~epG~yvL~fDNs 567 (596)
-..|...+||.|.|+|.=+
T Consensus 4 H~nW~FT~PG~Y~l~~~a~ 22 (41)
T TIGR03769 4 HANWVFTKPGTYTLTVQAT 22 (41)
T ss_pred ccceeeCCCeEEEEEEEEE
Confidence 4578899999999999643
No 23
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=24.79 E-value=1.6e+02 Score=26.93 Aligned_cols=43 Identities=16% Similarity=0.368 Sum_probs=34.8
Q ss_pred eEEEEeCChhHHHHHHhh-----cccCChhhhccEEEeCCCcchHHHHhhc
Q 007602 412 KQVFINVPWWYLAVNRMI-----SPFLTQRTRSKFVFAGPSKSAETLLRYI 457 (596)
Q Consensus 412 ~I~IINaP~~f~~iw~lV-----kpfLsektr~KI~~~~~~~~~e~L~k~I 457 (596)
.++++|..-++.-++.++ ..|+++.....+.++. +.+++.++|
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d---~~~e~~~~i 133 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVD---DPEEALEYI 133 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEES---SHHHHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeC---CHHHHHhhC
Confidence 699999887777777766 6799999999999995 577777765
No 24
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=22.90 E-value=1e+02 Score=33.58 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHh-HhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccceeeeeccCCCCCe
Q 007602 265 LKFL-RARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHP 321 (596)
Q Consensus 265 LRFL-RArkfdVekA~~~L~~~l~wRk~~~id~i~~~~i~~el~k~~~~~G~Dk~GrP 321 (596)
+||| |..+-.+..|.+||..|++-...... ..|...|+++|+.++|..
T Consensus 5 Yk~LSr~l~ihvn~AK~~L~ef~~~~~~k~~---------~~l~atYlvsG~~k~~~~ 53 (430)
T PF09507_consen 5 YKWLSRELGIHVNQAKQMLYEFHEKQNAKKP---------GSLHATYLVSGWLKDNGE 53 (430)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHHHHHHS----------S-EEEEEEEEEEESSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhccccCC---------CceEEEEEEEEEeCCCCC
Confidence 5777 67788899999999999987765432 123455678888777764
No 25
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=22.53 E-value=74 Score=37.45 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=36.5
Q ss_pred ChHHHHhc---CCCCCCCCCCHHHHHHHhHhcCCC---------------HHHHHHHHHHHHHHHH
Q 007602 243 GPEEVYIW---GIPLLADERSDVILLKFLRARDFK---------------VKDAFTMLKNTIRWRK 290 (596)
Q Consensus 243 ~~~~l~~W---~~Pll~~~~tD~~LLRFLRArkfd---------------VekA~~~L~~~l~wRk 290 (596)
.+.....| |.|...+..|=+.||||||...|+ ...-...|.+.|-.|+
T Consensus 488 ~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rlnll~K~LmLRR 553 (901)
T KOG4439|consen 488 KLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRLNLLTKSLMLRR 553 (901)
T ss_pred HHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhhhhhhhhhHHhhh
Confidence 35666789 999977777779999999999997 2344556666777776
No 26
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=22.38 E-value=2.8e+02 Score=25.41 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=33.3
Q ss_pred EEEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhccc
Q 007602 372 STIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPF 432 (596)
Q Consensus 372 ~~iv~IiDlkg~sgl~~~~l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpf 432 (596)
.+++++.|| |.+.++ ...++.++. ++..+++.++|+|.+..++-..+..-
T Consensus 60 dgVlvl~DL-Ggs~~n-------~e~a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~ 109 (125)
T TIGR02364 60 DGVLIFYDL-GSAVMN-------AEMAVELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQ 109 (125)
T ss_pred CCEEEEEcC-CCcHhH-------HHHHHHHhc---cccccEEEEechhHHHHHHHHHHHHc
Confidence 578999999 654221 112333332 35568899999999988887776644
No 27
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=22.01 E-value=1.4e+02 Score=20.75 Aligned_cols=23 Identities=39% Similarity=0.254 Sum_probs=19.0
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHH
Q 007602 260 SDVILLKFLRARDFKVKDAFTML 282 (596)
Q Consensus 260 tD~~LLRFLRArkfdVekA~~~L 282 (596)
+....++-|+.+++|+++|...|
T Consensus 14 ~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 14 SREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Confidence 45688999999999999997655
No 28
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=21.39 E-value=1.4e+02 Score=20.90 Aligned_cols=23 Identities=30% Similarity=0.148 Sum_probs=16.5
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHH
Q 007602 260 SDVILLKFLRARDFKVKDAFTML 282 (596)
Q Consensus 260 tD~~LLRFLRArkfdVekA~~~L 282 (596)
+.....+-|+.+++|+++|...|
T Consensus 15 ~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 15 SREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp -HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHhC
Confidence 34567778888888888887654
No 29
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.80 E-value=1.7e+02 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCHHHHHHHhHhcCCCHHHHHHHHH
Q 007602 259 RSDVILLKFLRARDFKVKDAFTMLK 283 (596)
Q Consensus 259 ~tD~~LLRFLRArkfdVekA~~~L~ 283 (596)
.++..+.+-|+++++|++.|...|-
T Consensus 16 l~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 16 LDEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888999999999999998874
No 30
>PF12306 PixA: Inclusion body protein; InterPro: IPR021087 This entry represents bacterial proteins that are typically between 173 and 191 amino acids in length. PixA is thought to be specifically produced in Xenorhabdus nematophila. It is an inclusion body protein []. This signature also identifies AidA.
Probab=20.05 E-value=1.1e+02 Score=29.52 Aligned_cols=34 Identities=6% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCCceEEEEeeCCCceeeeEEEEeeceeeeeeEe
Q 007602 488 PAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEF 521 (596)
Q Consensus 488 ~gs~~~Vei~V~egs~L~WeF~v~~~DI~FgV~f 521 (596)
..+...+.|.+..|++|+|.-.+...+..+.+.+
T Consensus 52 ~~~~~~L~i~a~~GD~Irwr~tSls~n~~y~v~l 85 (172)
T PF12306_consen 52 GQGGGELSIKANVGDTIRWRATSLSGNSEYSVIL 85 (172)
T ss_pred CCCCCceEEeccCCCEEEEEEEeeccCCceeEEE
Confidence 3445566777888999999988887777776653
Done!