Query 007602
Match_columns 596
No_of_seqs 322 out of 1434
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 7.8E-64 2.7E-68 539.6 28.9 339 237-586 9-389 (403)
2 3hx3_A Retinaldehyde-binding p 100.0 8.6E-44 2.9E-48 372.1 10.8 233 225-474 43-296 (316)
3 1aua_A Phosphatidylinositol tr 100.0 8.6E-42 3E-46 353.0 14.6 231 236-474 26-269 (296)
4 3q8g_A CRAL-TRIO domain-contai 100.0 2.6E-41 8.8E-46 354.0 12.6 227 240-474 39-284 (320)
5 1r5l_A Alpha-TTP, protein (alp 100.0 3.3E-39 1.1E-43 326.9 19.1 215 241-472 9-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.0 2.2E-10 7.5E-15 116.0 6.1 133 308-462 11-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 2.7E-09 9.4E-14 109.7 5.1 133 308-462 30-163 (290)
8 3jqw_A COLH protein, collagena 50.5 62 0.0021 28.3 8.3 34 548-583 85-118 (121)
9 2cio_B Inhibitor of cysteine p 43.5 1.2E+02 0.004 26.4 9.0 97 480-580 11-117 (121)
10 1gr3_A Collagen X; extracellul 41.2 21 0.00071 32.8 3.9 19 548-566 65-83 (160)
11 2wnv_A C1Q chain A, complement 37.7 17 0.0006 32.0 2.7 20 548-567 36-55 (134)
12 2wnv_B C1Q chain B, complement 37.0 18 0.00063 32.0 2.7 19 548-566 39-57 (136)
13 2q3l_A Uncharacterized protein 36.4 21 0.00071 31.2 3.0 94 316-436 16-111 (126)
14 2wnv_C C1Q chain C, complement 36.4 19 0.00065 31.7 2.7 19 548-566 40-58 (131)
15 1o91_A Collagen alpha 1(VIII) 35.8 25 0.00085 32.8 3.5 19 548-566 83-101 (178)
16 2ka3_A Emilin-1; C1Q-like doma 35.8 35 0.0012 31.2 4.5 18 548-565 49-66 (162)
17 1nqj_A Class 1 collagenase; be 34.8 1.4E+02 0.0049 25.9 8.1 30 548-581 89-118 (119)
18 3m86_A Amoebiasin-2; cysteine 32.4 2.3E+02 0.0079 24.0 10.0 92 478-580 12-110 (111)
19 2c34_A ICP, inhibitor of cyste 26.7 2.8E+02 0.0097 23.6 8.6 84 475-569 8-98 (116)
20 1z96_A DNA-damage, UBA-domain 26.4 69 0.0024 21.6 3.7 23 260-282 17-39 (40)
21 4g9s_B Inhibitor of G-type lys 25.4 2.9E+02 0.0099 23.1 8.3 33 549-581 74-109 (111)
22 1v92_A NSFL1 cofactor P47; 3-h 24.1 54 0.0018 23.1 2.8 23 260-282 19-41 (46)
23 1wgl_A TOLL-interacting protei 21.8 76 0.0026 24.2 3.4 26 259-284 23-48 (59)
24 4dzg_A PLIG; lysozyme inhibito 21.0 82 0.0028 27.1 3.9 84 486-581 24-112 (114)
25 4f3j_A Complement C1Q tumor ne 20.7 51 0.0017 29.4 2.6 18 548-565 38-55 (148)
26 2dah_A Ubiquilin-3; UBA domain 20.6 1.2E+02 0.004 22.6 4.2 37 243-285 12-48 (54)
27 2dal_A Protein KIAA0794; FAS a 20.3 88 0.003 23.9 3.5 23 260-282 29-51 (62)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=7.8e-64 Score=539.63 Aligned_cols=339 Identities=23% Similarity=0.412 Sum_probs=282.5
Q ss_pred CCCCCCChHHHHhc--CC-CCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccc-ccc--ee
Q 007602 237 KTEPEMGPEEVYIW--GI-PLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDD-LDK--TV 310 (596)
Q Consensus 237 ~~~~~~~~~~l~~W--~~-Pll~~~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~~~id~i~~~~i~~e-l~k--~~ 310 (596)
.....+.+.+|+.| .+ |+++ ..+|.+||||||||+||+++|.+||++++.||+.++++.++. +..++ +.. ..
T Consensus 9 ~~~q~~~l~~lr~~l~~~~~~l~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~ 86 (403)
T 1olm_A 9 SPRQKEALAKFRENVQDVLPALP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSG 86 (403)
T ss_dssp CHHHHHHHHHHHHHHGGGGGGSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCB
T ss_pred CHHHHHHHHHHHHHHHhhccCCC-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCc
Confidence 33345679999999 33 4555 578999999999999999999999999999999999887765 22222 221 13
Q ss_pred eeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccC----CCCeEEEEEEEeCCCCCCC
Q 007602 311 FMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFR----PGGISTIVQVNDLKNSPGP 386 (596)
Q Consensus 311 ~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~----~~~i~~iv~IiDlkg~sgl 386 (596)
+++|+|++||||+|+++|++|++++++.. ...+++|++++++|.+++.+..+ +.++.++++|+||+|++ +
T Consensus 87 ~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s-l 160 (403)
T 1olm_A 87 GMCGYDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLG-L 160 (403)
T ss_dssp EEEEECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCC-G
T ss_pred eeeccCCCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCC-H
Confidence 46899999999999999999999886643 35899999999999998766532 33578999999999885 4
Q ss_pred Ccc-h-HHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCccc
Q 007602 387 AKW-E-LRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPV 464 (596)
Q Consensus 387 ~~~-~-l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~LP~ 464 (596)
.+. . ...+++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|++|||+++||.
T Consensus 161 ~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~ 239 (403)
T 1olm_A 161 KHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPV 239 (403)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBG
T ss_pred HHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCch
Confidence 332 1 35678999999999999999999999999999999999999999999999999986 57889999999999999
Q ss_pred cCCCCCCCCC------------------CccC----ccc-cccccCCCCceEEEEeeC-CCceeeeEEEEeeceeeeeeE
Q 007602 465 KYGGLSKVGE------------------FAAT----DAV-TEITVKPAAKHTVEFPVT-EECHLTWEVRVVGWEVSYGAE 520 (596)
Q Consensus 465 eyGG~~~~~d------------------f~~~----d~~-~~v~Vk~gs~~~Vei~V~-egs~L~WeF~v~~~DI~FgV~ 520 (596)
+|||++.+.+ |+.. +.. +.++|++|++++|.|++. +|++|.|+|+|+++||+|||+
T Consensus 240 ~yGG~~~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~ 319 (403)
T 1olm_A 240 EYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIF 319 (403)
T ss_dssp GGTSSBCCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEE
T ss_pred hhCCCcCCCCCCcccccccccCCCCCcccccCCCcccccceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEE
Confidence 9999998653 1111 223 459999999999999998 699999999999999999999
Q ss_pred eccCC----CCCceEEEecceeccCCCCCCcccceEEeCcCcEEEEEEECCCC--CCceEEEEEEEccCCCc
Q 007602 521 FVPST----EGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS--KKKKLLYRLKTKPSSGH 586 (596)
Q Consensus 521 f~~~~----~~~~~~iV~~~~kv~s~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~v~~ps~~ 586 (596)
|.+.. +++....|.+..|+.+| ..+ ++|+|+|.+||+|+|+|||+|| ++|+|+|++.+.+|+..
T Consensus 320 ~~~~~~~~~~~~~~~~v~p~~r~~~~-~~~-~~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~~~~~ 389 (403)
T 1olm_A 320 LKTKMGERQRAGEMTEVLPNQRYNSH-LVP-EDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDKA 389 (403)
T ss_dssp EC----CCCCGGGSEEEEEEEEECTT-TSC-EEEEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEECCCHH
T ss_pred EecccccccCCCcceEEeeeeeecCc-ccc-ccCEEEcCCCeEEEEEEeccccceeceEEEEEEEEeCCccc
Confidence 98532 21334555567999999 776 8999999999999999999999 99999999999988754
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=8.6e-44 Score=372.13 Aligned_cols=233 Identities=19% Similarity=0.344 Sum_probs=186.6
Q ss_pred ccccccccccCCCCCCCCChHHHHhc--CCCCCC-----------CCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHH
Q 007602 225 PAVTSENESKDTKTEPEMGPEEVYIW--GIPLLA-----------DERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKE 291 (596)
Q Consensus 225 ~~~~~~~el~e~~~~~~~~~~~l~~W--~~Pll~-----------~~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~ 291 (596)
-.+.|++||+|+++.+.+++.+||.| .+||++ ...+|.+||||||||+||+++|.+||++|+.||+.
T Consensus 43 ~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~ 122 (316)
T 3hx3_A 43 TLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQ 122 (316)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999 888873 34689999999999999999999999999999999
Q ss_pred cCC--CCCCCCcccccc-cce-eeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccC
Q 007602 292 FGI--DDLIGQDLGDDL-DKT-VFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFR 367 (596)
Q Consensus 292 ~~i--d~i~~~~i~~el-~k~-~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~ 367 (596)
++. +++...++...+ .+. ++++|+|++||||+|+++|++|++++ ...++++++++++|.+++..
T Consensus 123 ~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~---------~~~~~~r~~~~~lE~~l~~~--- 190 (316)
T 3hx3_A 123 YPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI---------TFDEILQAYCFILEKLLENE--- 190 (316)
T ss_dssp CGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS---------CHHHHHHHHHHHHHHHTTSH---
T ss_pred CchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC---------CHHHHHHHHHHHHHHHHhcc---
Confidence 972 333222222222 233 56789999999999999999998865 25789999999999987532
Q ss_pred CCCeEEEEEEEeCCCCCCCCcchH----HHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEE
Q 007602 368 PGGISTIVQVNDLKNSPGPAKWEL----RQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVF 443 (596)
Q Consensus 368 ~~~i~~iv~IiDlkg~sgl~~~~l----~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~ 443 (596)
..++.|+++|+||+|++ + .++ ...++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|
T Consensus 191 ~~~v~g~v~IiD~~g~s-l--~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~ 267 (316)
T 3hx3_A 191 ETQINGFCIIENFKGFT-M--QQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV 267 (316)
T ss_dssp HHHHHCEEEEEECTTCC-H--HHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEE
T ss_pred cCCcceEEEEEECCCCC-H--HHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEE
Confidence 34678999999999874 3 332 3568999999999999999999999999999999999999999999999999
Q ss_pred eCCCcchHHHHhhcCcCCccccCCCCCCCCC
Q 007602 444 AGPSKSAETLLRYIAAEQLPVKYGGLSKVGE 474 (596)
Q Consensus 444 ~~~~~~~e~L~k~Id~e~LP~eyGG~~~~~d 474 (596)
+++ +.+.|+++||+++||.+|||++++.+
T Consensus 268 ~~~--~~~~L~~~I~~~~LP~eyGG~~~~~d 296 (316)
T 3hx3_A 268 HGD--DLSGFYQEIDENILPSDFGGTLPKYD 296 (316)
T ss_dssp EET--CCHHHHHHSCGGGSBGGGTSSBCCCC
T ss_pred eCC--CHHHHHhhCCHhhCcHhhCCCCCCcC
Confidence 974 35799999999999999999998654
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=8.6e-42 Score=352.95 Aligned_cols=231 Identities=29% Similarity=0.417 Sum_probs=190.5
Q ss_pred CCCCCCCChHHHHhc--CCCCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccc---ccccce-
Q 007602 236 TKTEPEMGPEEVYIW--GIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLG---DDLDKT- 309 (596)
Q Consensus 236 ~~~~~~~~~~~l~~W--~~Pll~~~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~~~id~i~~~~i~---~el~k~- 309 (596)
......+.+++|+.| .+|+ +...+|.+||||||||+||+++|.+||++|+.||+.++++.+...... ..+.+.
T Consensus 26 l~~~q~~~l~~lr~~l~~~~~-~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~ 104 (296)
T 1aua_A 26 LDSAQEKALAELRKLLEDAGF-IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFY 104 (296)
T ss_dssp CCTTHHHHHHHHHHHHHHTTC-CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGS
T ss_pred CCHHHHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhC
Confidence 344446789999999 5664 456789999999999999999999999999999999998776543211 222222
Q ss_pred -eeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhc-----cCCCCeEEEEEEEeCCCC
Q 007602 310 -VFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLD-----FRPGGISTIVQVNDLKNS 383 (596)
Q Consensus 310 -~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~-----~~~~~i~~iv~IiDlkg~ 383 (596)
.+++|+|++||||+|+++|++|++++++.. ...++++++++.+|.+++.+. ..+..+.++++|+||+|+
T Consensus 105 ~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~ 179 (296)
T 1aua_A 105 PQYYHKTDKDGRPVYFEELGAVNLHEMNKVT-----SEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGI 179 (296)
T ss_dssp CCEEEEECTTSCEEEEECGGGCCHHHHTTTC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred CceecccCCCCCEEEEEeeccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCC
Confidence 357899999999999999999999876533 357899999999999875321 013457899999999987
Q ss_pred CCCCcc-hHHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCc
Q 007602 384 PGPAKW-ELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQL 462 (596)
Q Consensus 384 sgl~~~-~l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~L 462 (596)
+ +++. .+..+++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|+++||+++|
T Consensus 180 s-~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~L 257 (296)
T 1aua_A 180 S-ISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENL 257 (296)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSS
T ss_pred C-HHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCHhhC
Confidence 4 3322 224678999999999999999999999999999999999999999999999999986 578899999999999
Q ss_pred cccCCCCCCCCC
Q 007602 463 PVKYGGLSKVGE 474 (596)
Q Consensus 463 P~eyGG~~~~~d 474 (596)
|++|||++.+.+
T Consensus 258 P~~yGG~~~~~~ 269 (296)
T 1aua_A 258 PVKFGGKSEVDE 269 (296)
T ss_dssp BGGGTSCBCCCG
T ss_pred cHHhCCCCCCCC
Confidence 999999998865
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=2.6e-41 Score=354.02 Aligned_cols=227 Identities=29% Similarity=0.425 Sum_probs=188.3
Q ss_pred CCCChHHHHhc--CCCCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCcccc---------ccc-
Q 007602 240 PEMGPEEVYIW--GIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGD---------DLD- 307 (596)
Q Consensus 240 ~~~~~~~l~~W--~~Pll~~~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~~~id~i~~~~i~~---------el~- 307 (596)
..+.+++|+.| ..++ ....||.+||||||||+||+++|.+||+++++||+.+++|.++.+...+ .+.
T Consensus 39 q~~~l~~lR~~l~~~~~-~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~ 117 (320)
T 3q8g_A 39 QEEALLQFRSILLEKNY-KERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAK 117 (320)
T ss_dssp HHHHHHHHHHHHHHTTC-CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHH
Confidence 34789999999 6664 4467899999999999999999999999999999999988765432111 122
Q ss_pred -ceeeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHH-hc----cCCCCeEEEEEEEeCC
Q 007602 308 -KTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRK-LD----FRPGGISTIVQVNDLK 381 (596)
Q Consensus 308 -k~~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~-l~----~~~~~i~~iv~IiDlk 381 (596)
...+++|+|++||||+|+++|++|++++++.+ ...++++++++.+|.+++. +. ..+..+.++++|+||+
T Consensus 118 ~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~ 192 (320)
T 3q8g_A 118 MYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLK 192 (320)
T ss_dssp TSCEEEEEECTTCCEEEEEECTTCCHHHHHHHC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred hCCceecCCCCCcCEEEEEeccccCHHHhhccC-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECC
Confidence 23578999999999999999999999886643 2478899999999988642 11 1133478899999999
Q ss_pred CCCCCCcc-hHHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcC
Q 007602 382 NSPGPAKW-ELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAE 460 (596)
Q Consensus 382 g~sgl~~~-~l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e 460 (596)
|++ +++. .+..+++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|.++||++
T Consensus 193 g~s-l~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~ 270 (320)
T 3q8g_A 193 GIS-LSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQIPIE 270 (320)
T ss_dssp TCC-HHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHHSCGG
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhhCChh
Confidence 874 3221 224678999999999999999999999999999999999999999999999999985 4788999999999
Q ss_pred CccccCCCCCCCCC
Q 007602 461 QLPVKYGGLSKVGE 474 (596)
Q Consensus 461 ~LP~eyGG~~~~~d 474 (596)
+||++|||++++.+
T Consensus 271 ~LP~~yGG~~~~~~ 284 (320)
T 3q8g_A 271 NLPVKYGGTSVLHN 284 (320)
T ss_dssp GSBGGGTSCBCCSS
T ss_pred hCChhhCCCCCCCC
Confidence 99999999999864
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=3.3e-39 Score=326.86 Aligned_cols=215 Identities=27% Similarity=0.384 Sum_probs=179.3
Q ss_pred CCChHHHHhc----CCCCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcC-C-CCCCCCcccccc-cc-eeee
Q 007602 241 EMGPEEVYIW----GIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFG-I-DDLIGQDLGDDL-DK-TVFM 312 (596)
Q Consensus 241 ~~~~~~l~~W----~~Pll~~~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~~~-i-d~i~~~~i~~el-~k-~~~~ 312 (596)
.+.+.+|+.| +.|+++...+|.+||||||||+||+++|.+||++|+.||+.++ + +++....+...+ .+ ..++
T Consensus 9 ~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l 88 (262)
T 1r5l_A 9 QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVL 88 (262)
T ss_dssp CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCC
Confidence 3689999999 3356677789999999999999999999999999999999986 2 223222222222 23 3567
Q ss_pred eccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCCCCCcchH-
Q 007602 313 HGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWEL- 391 (596)
Q Consensus 313 ~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~iv~IiDlkg~sgl~~~~l- 391 (596)
+|+|++||||+|+++|++|++++ ...+++++.++++|.+++..+ .++.|+++|+||+|++ +.++
T Consensus 89 ~g~D~~GrpV~i~~~~~~d~~~~---------~~~~~~r~~~~~~E~~~~~~~---~~~~g~~~I~D~~g~s---~~~~~ 153 (262)
T 1r5l_A 89 RSRDPTGSKVLIYRIAHWDPKVF---------TAYDVFRVSLITSELIVQEVE---TQRNGIKAIFDLEGWQ---FSHAF 153 (262)
T ss_dssp SSCCTTCCEEEEEEGGGCCTTTS---------CHHHHHHHHHHHHHHHTTSHH---HHHHCEEEEEECTTCC---HHHHH
T ss_pred CCcCCCCCEEEEEeccccCcccC---------CHHHHHHHHHHHHHHHHhChh---hcccceEEEEECCCCC---HHHHh
Confidence 89999999999999999998764 246889999999998765432 2467899999999874 3333
Q ss_pred ---HHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCccccCCC
Q 007602 392 ---RQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGG 468 (596)
Q Consensus 392 ---~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~LP~eyGG 468 (596)
.++++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|.+||+ ++||++|||
T Consensus 154 ~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG 231 (262)
T 1r5l_A 154 QITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGG 231 (262)
T ss_dssp HCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTC
T ss_pred ccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCC
Confidence 4678999999999999999999999999999999999999999999999999975 57899999999 999999999
Q ss_pred CCCC
Q 007602 469 LSKV 472 (596)
Q Consensus 469 ~~~~ 472 (596)
++..
T Consensus 232 ~~~~ 235 (262)
T 1r5l_A 232 EEFS 235 (262)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9865
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.01 E-value=2.2e-10 Score=115.98 Aligned_cols=133 Identities=15% Similarity=0.200 Sum_probs=103.2
Q ss_pred ceeeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCCCCC
Q 007602 308 KTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPA 387 (596)
Q Consensus 308 k~~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~iv~IiDlkg~sgl~ 387 (596)
+.+|-.|.|++||||+++.+++++...+ ..+.++.+.+..++.++. ..+.+|+|+.|.+.-.
T Consensus 11 ~ify~~G~d~dGrpViv~~~~~l~~~~~---------D~e~Ll~~vl~tl~~~~~---------~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 11 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYYA---------KPYEIVVDLTHTGPSN 72 (256)
T ss_dssp TSEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTTT---------SCEEEEEECTTCCGGG
T ss_pred CCEEEcCcCCCCCEEEEEEeecCCCCCC---------CHHHHHHHHHHHHHHhcC---------CCeEEEEECCCCCccc
Confidence 4566669999999999999999987544 245666666666654431 3578999999876332
Q ss_pred cchHHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhh-cccCChhhhccEEEeCCCcchHHHHhhcCcCCc
Q 007602 388 KWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMI-SPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQL 462 (596)
Q Consensus 388 ~~~l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lV-kpfLsektr~KI~~~~~~~~~e~L~k~Id~e~L 462 (596)
.. -.++++.+..++...|...++++||+|+++||...|+.+ ++|.+.+..+|+++++ +..+|.++|+.++|
T Consensus 73 ~p-~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~---sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 73 RF-KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID---CPGKLAEHIEHEQQ 144 (256)
T ss_dssp CC-CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES---STTGGGGTSCGGGC
T ss_pred CC-cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC---CHHHHHhhcCHHHc
Confidence 23 367899999999999999999999999999999776654 5566668889999995 57789999986665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.79 E-value=2.7e-09 Score=109.67 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=93.7
Q ss_pred ceeeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEeCCCCCCCC
Q 007602 308 KTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPA 387 (596)
Q Consensus 308 k~~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~i~~iv~IiDlkg~sgl~ 387 (596)
+.++-.|.|++||||+++.+++++...+ ..+.++.+.+..++.++. ..+.+|+|+.+.+.-
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~~---------D~e~Lly~il~tl~~~~~---------~~y~lV~D~T~~~~~- 90 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYYA---------KPYEIVVDLTHTGPS- 90 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTTT---------SCEEEEEECTTCCGG-
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccCC---------CHHHHHHHHHHHHHHhcC---------CCeEEEEEcCCCCcc-
Confidence 4455558899999999999999986544 245566565555554431 357899999987532
Q ss_pred cchHHHHHHHHHHHhhhccccccceEEEEeCChhHHHHH-HhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCc
Q 007602 388 KWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVN-RMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQL 462 (596)
Q Consensus 388 ~~~l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw-~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~L 462 (596)
+..-..+++.+..++...|...++++||+|++++|...+ .+.++|.+.+..+|+.+++. ...|..+|+.+++
T Consensus 91 n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~---~~~L~~~i~~~~~ 163 (290)
T 3peg_A 91 NRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQ 163 (290)
T ss_dssp GCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS---SCC----------
T ss_pred CCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC---HHHHHhhCCHHHh
Confidence 222367899999999999999999999999999998754 57788888888999999863 3458889987654
No 8
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=50.51 E-value=62 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=26.7
Q ss_pred ccceEEeCcCcEEEEEEECCCCCCceEEEEEEEccC
Q 007602 548 VCDSFKIVEPGKVVLTIDNPTSKKKKLLYRLKTKPS 583 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDNs~S~sKkl~Y~i~v~~p 583 (596)
+.|+|...+||+|-|..-+ +|. .+..|.+.+...
T Consensus 85 ~~~~~~~~~pGkYYl~Vy~-y~~-~~g~Y~l~i~g~ 118 (121)
T 3jqw_A 85 LSGKFKADKPGRYYIHLYM-FNG-SYMPYRINIEGS 118 (121)
T ss_dssp EEEEEEECSCEEEEEEEEE-EEC-SCEEEEEEEEEC
T ss_pred EEEEEEeCCCeeEEEEEEE-ecC-CCccEEEEEEee
Confidence 6899999899999998876 332 367999988754
No 9
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=43.49 E-value=1.2e+02 Score=26.36 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=54.0
Q ss_pred cccccccCCCCceEEEEeeCCCceeeeEEEEeece------eeeeeEeccCCCCCceEEEecceeccCCCCCCcccceEE
Q 007602 480 AVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWE------VSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFK 553 (596)
Q Consensus 480 ~~~~v~Vk~gs~~~Vei~V~egs~L~WeF~v~~~D------I~FgV~f~~~~~~~~~~iV~~~~kv~s~~~~p~~~Gs~~ 553 (596)
.-..+.++.|....|.++-.+..-..|.+...... +..+-.|.|...++.... ++...+++. . ...=.|+
T Consensus 11 n~~ti~l~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~l~~~~~~v~~~y~~~~~~~~~~~-~~~~~vG~g-G--~~~~~fk 86 (121)
T 2cio_B 11 NNKTIRMVIGETFTIELESNPTTGYTWLRSGLAGTELSDCTFAIQSKFNNRAPHDNHKN-HRRLLVGAG-G--TMVLEVK 86 (121)
T ss_pred CCcEEEEcCCCEEEEEeCCCCCCCeEEEEecCccccCCCccEEEeeeEEcCCCCccccc-ccccEeCCC-c--eEEEEEE
Confidence 33568899999888877776777799998773211 222233443322110000 000122222 1 1233788
Q ss_pred eCcCcEEEEEEECCCC----CCceEEEEEEE
Q 007602 554 IVEPGKVVLTIDNPTS----KKKKLLYRLKT 580 (596)
Q Consensus 554 ~~epG~yvL~fDNs~S----~sKkl~Y~i~v 580 (596)
+..+|++.|.|.+..+ ....-.|.+.|
T Consensus 87 a~~~G~~~i~~~Y~RpWe~~~~~~~~f~~~V 117 (121)
T 2cio_B 87 ALKAGKHTLSLAYGRPWVGFNAAAKRYNIHV 117 (121)
T ss_pred EecCceEEEEEEEECccCCCCCcceEEEEEE
Confidence 9999999999998766 22234555554
No 10
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=41.23 E-value=21 Score=32.77 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=17.3
Q ss_pred ccceEEeCcCcEEEEEEEC
Q 007602 548 VCDSFKIVEPGKVVLTIDN 566 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDN 566 (596)
..|.|+|+.+|+|.+.|.=
T Consensus 65 ~TG~FtaPv~GvY~Fsft~ 83 (160)
T 1gr3_A 65 RTGIFTCQIPGIYYFSYHV 83 (160)
T ss_dssp TTTEEECSSCEEEEEEEEE
T ss_pred CCCEEEcccCCEEEEEEEE
Confidence 5899999999999999973
No 11
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=37.73 E-value=17 Score=32.04 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=17.7
Q ss_pred ccceEEeCcCcEEEEEEECC
Q 007602 548 VCDSFKIVEPGKVVLTIDNP 567 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDNs 567 (596)
..|.|+|+.||+|.+.|.=.
T Consensus 36 ~TG~Ftap~~G~Y~Fs~~~~ 55 (134)
T 2wnv_A 36 HSGRFVCTVPGYYYFTFQVL 55 (134)
T ss_dssp TTTEEECCSCEEEEEEEEEE
T ss_pred CCCEEECeeCCEEEEEEEEE
Confidence 58999999999999999643
No 12
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=36.98 E-value=18 Score=32.05 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=17.3
Q ss_pred ccceEEeCcCcEEEEEEEC
Q 007602 548 VCDSFKIVEPGKVVLTIDN 566 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDN 566 (596)
..|.|+|+.||+|.+.|.=
T Consensus 39 ~TG~Ftap~~G~Y~Fs~~~ 57 (136)
T 2wnv_B 39 RSGKFTCKVPGLYYFTYHA 57 (136)
T ss_dssp TTTEEECSSCEEEEEEEEE
T ss_pred CCCEEECCcCeEEEEEEEE
Confidence 5899999999999999963
No 13
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=36.43 E-value=21 Score=31.19 Aligned_cols=94 Identities=12% Similarity=0.159 Sum_probs=54.3
Q ss_pred CCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccCCCC--eEEEEEEEeCCCCCCCCcchHHH
Q 007602 316 DKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGG--ISTIVQVNDLKNSPGPAKWELRQ 393 (596)
Q Consensus 316 Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~~~~--i~~iv~IiDlkg~sgl~~~~l~~ 393 (596)
+..+..+.+...|.++.. +|-. ++-.++..+. . .+. +.-++.+-|+. |+....+|.
T Consensus 16 ~~~~~vl~v~~~G~lt~~--------------d~~~-l~~~l~~~l~---~-~~~~~i~ll~~~~~f~---G~~~~a~~~ 73 (126)
T 2q3l_A 16 SQDDFYLAFKAVGKLTHE--------------DYEQ-MTPLLESALA---G-IKTPEIVALIDITELD---GLSLHAAWD 73 (126)
T ss_dssp ETTEEEEEEEEEEEECHH--------------HHHH-HHHHHHHHTT---T-CCSSCEEEEEEEEEEE---EECHHHHHH
T ss_pred cCCCCEEEEEEEeeECHH--------------HHHH-HHHHHHHHHH---h-CCCceEEEEEEecCCC---CCCHHHHHH
Confidence 445556666666765543 3333 3344555432 1 223 44444444444 454444444
Q ss_pred HHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChh
Q 007602 394 ATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQR 436 (596)
Q Consensus 394 ~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsek 436 (596)
-++..+ .|+ ..+.|+=||--+.|...+-+++.+|++-.
T Consensus 74 d~k~~~----~h~-~~~~RiAvV~d~~W~~~~~~~~~~~~~~e 111 (126)
T 2q3l_A 74 DLKLGL----KHG-KEFKRVAIIGQGELQEWATRVANWFTPGE 111 (126)
T ss_dssp HHHHHH----HHG-GGEEEEEEECCSHHHHHHHHHHHHHCSSE
T ss_pred HHHhhh----hHH-hcCCEEEEEcChHHHHHHHHHHhhccCCc
Confidence 443222 333 67889999999999999999999997753
No 14
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=36.43 E-value=19 Score=31.69 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=17.3
Q ss_pred ccceEEeCcCcEEEEEEEC
Q 007602 548 VCDSFKIVEPGKVVLTIDN 566 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDN 566 (596)
..|.|+|+.||+|.+.|.=
T Consensus 40 ~TG~Ftap~~G~Y~Fs~~~ 58 (131)
T 2wnv_C 40 STGKFTCKVPGLYYFVYHA 58 (131)
T ss_dssp TTTEEECSSCEEEEEEEEE
T ss_pred CCCEEEcccCCEEEEEEEE
Confidence 5899999999999999963
No 15
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=35.77 E-value=25 Score=32.85 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=17.3
Q ss_pred ccceEEeCcCcEEEEEEEC
Q 007602 548 VCDSFKIVEPGKVVLTIDN 566 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDN 566 (596)
..|.|+|+.+|+|.|.|.=
T Consensus 83 ~TG~FTaPv~GvY~Fsft~ 101 (178)
T 1o91_A 83 QTGIFTCEVPGVYYFAYHV 101 (178)
T ss_dssp TTTEEECCSCEEEEEEEEE
T ss_pred CCCEEEcccCeEEEEEEEE
Confidence 5899999999999999973
No 16
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=35.76 E-value=35 Score=31.24 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=16.7
Q ss_pred ccceEEeCcCcEEEEEEE
Q 007602 548 VCDSFKIVEPGKVVLTID 565 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fD 565 (596)
..|.|+|+.||+|.+.|.
T Consensus 49 ~TG~FTaPv~GvY~Fsf~ 66 (162)
T 2ka3_A 49 ETGVFTAPLAGRYLLSAV 66 (162)
T ss_dssp TTTEEECCCCEEEEEEEC
T ss_pred CCCEEECCCCeEEEEEEE
Confidence 589999999999999994
No 17
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=34.77 E-value=1.4e+02 Score=25.89 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=24.1
Q ss_pred ccceEEeCcCcEEEEEEECCCCCCceEEEEEEEc
Q 007602 548 VCDSFKIVEPGKVVLTIDNPTSKKKKLLYRLKTK 581 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDNs~S~sKkl~Y~i~v~ 581 (596)
+.|+|.+. ||+|-|.+... +....|.+.|.
T Consensus 89 ~~~~~~~~-pGkYYl~Vy~y---~~~g~Y~l~v~ 118 (119)
T 1nqj_A 89 VSNKVKLR-PGKYYLLVYKY---SGSGNYELRVN 118 (119)
T ss_dssp EEEEEEEC-SEEEEEEEEEE---ESCEEEEEEEE
T ss_pred EEEEEEcC-CcEEEEEEEEe---CCCceEEEEEe
Confidence 57899887 99999988763 46788998875
No 18
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=32.42 E-value=2.3e+02 Score=23.98 Aligned_cols=92 Identities=7% Similarity=0.127 Sum_probs=53.5
Q ss_pred CccccccccCCCCceEEEEeeCCCceeeeEEEEeeceeeeeeE-eccCCCCCceEEEecceeccCCCCCCcccceEEeCc
Q 007602 478 TDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAE-FVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVE 556 (596)
Q Consensus 478 ~d~~~~v~Vk~gs~~~Vei~V~egs~L~WeF~v~~~DI~FgV~-f~~~~~~~~~~iV~~~~kv~s~~~~p~~~Gs~~~~e 556 (596)
.|.-+.+.++.|....|.++-.+..-..|.+...+.-+...-. |..... ....+++. . ...=.|++..
T Consensus 12 ~d~g~~I~v~~Ge~~~I~L~~NptTGY~W~~~~~~~~~~l~~~~~~~~p~--------~~~~vG~g-G--~~~~~f~a~~ 80 (111)
T 3m86_A 12 KEDHATLHISFNDLIKIQLRTNPSTGYAWNIEYPTDTFSLSQDTIKAEPH--------PSGMVGFP-S--IREIQLKPLK 80 (111)
T ss_dssp GGTTCEEEECTTCEEEEEEEECGGGTCEEEEECCTTTEEEEEEEEEECCC--------STTTSSCS-E--EEEEEEEESS
T ss_pred HHCCcEEEEcCCCEEEEEECCCCCCCeEEEEecCCCcEEEcccceEeCCC--------CCCCCCCC-e--eEEEEEEEeC
Confidence 3444678999999998888877767799998764221211110 110000 00011111 0 0122578899
Q ss_pred CcEEEEEEECCCC------CCceEEEEEEE
Q 007602 557 PGKVVLTIDNPTS------KKKKLLYRLKT 580 (596)
Q Consensus 557 pG~yvL~fDNs~S------~sKkl~Y~i~v 580 (596)
+|.+.|.|....+ -.++..|.|.|
T Consensus 81 ~G~~~i~~~Y~RpWe~~~~~~~tf~~~V~V 110 (111)
T 3m86_A 81 VGTTTIKLGYSRPWEKGKEPLRSLTYSVVI 110 (111)
T ss_dssp CEEEEEEEEEECTTCCSCCCSEEEEEEEEE
T ss_pred CeEEEEEEEEECccCCCCCcccEEEEEEEE
Confidence 9999999998766 24556666655
No 19
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=26.73 E-value=2.8e+02 Score=23.60 Aligned_cols=84 Identities=10% Similarity=0.134 Sum_probs=47.1
Q ss_pred CccCccccccccCCCCceEEEEeeCCCceeeeEEEE-eece----eeeee--EeccCCCCCceEEEecceeccCCCCCCc
Q 007602 475 FAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRV-VGWE----VSYGA--EFVPSTEGSYTVIIQKAKKLASNAEQPV 547 (596)
Q Consensus 475 f~~~d~~~~v~Vk~gs~~~Vei~V~egs~L~WeF~v-~~~D----I~FgV--~f~~~~~~~~~~iV~~~~kv~s~~~~p~ 547 (596)
+..+|.-..++++.|....|.++-.+..-..|.+.. .+.. -+..+ .|.|..... ..+++. . .
T Consensus 8 lt~~d~~~~i~~~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~~l~~~gl~~~s~y~~~~~~~--------~~vG~g-G--~ 76 (116)
T 2c34_A 8 LSVKDNDKWVDTHVGKTTEIHLKGNPTTGYMWTRVGFVGKDVLSDEILEVVCKYTPTPSST--------PMVGVG-G--I 76 (116)
T ss_dssp CTTCCCCCCEEECSSCCEEEEEECCTTSSCEEEETTCTTSSCCCCSSEEEEEEEECCCCSS--------SSSCCC-C--E
T ss_pred eeEccCCcEEEEcCCCEEEEEeCCCCCCCcEEEEecCCCcccccccccEEEEeEEeCCCCC--------CCcCCC-c--e
Confidence 344455567899999998888887776778998763 1111 11111 022111000 011111 0 0
Q ss_pred ccceEEeCcCcEEEEEEECCCC
Q 007602 548 VCDSFKIVEPGKVVLTIDNPTS 569 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fDNs~S 569 (596)
..=.|++..+|...|.|....+
T Consensus 77 ~~~~f~a~~~G~~~i~~~Y~R~ 98 (116)
T 2c34_A 77 YVVLVKPRKRGHHTLELVYTRP 98 (116)
T ss_dssp EEEEEEECSSSSEEEEEEEEBT
T ss_pred EEEEEEEeCCceEEEEEEEECc
Confidence 1226788899999999988655
No 20
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=26.42 E-value=69 Score=21.61 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=18.4
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHH
Q 007602 260 SDVILLKFLRARDFKVKDAFTML 282 (596)
Q Consensus 260 tD~~LLRFLRArkfdVekA~~~L 282 (596)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 44566889999999999998765
No 21
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=25.41 E-value=2.9e+02 Score=23.14 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.3
Q ss_pred cceEEeCcCcEEEEEEECC---CCCCceEEEEEEEc
Q 007602 549 CDSFKIVEPGKVVLTIDNP---TSKKKKLLYRLKTK 581 (596)
Q Consensus 549 ~Gs~~~~epG~yvL~fDNs---~S~sKkl~Y~i~v~ 581 (596)
..+...+..|.|.|..-.. ..+.+...|++.|.
T Consensus 74 ~~~~~LP~sG~Y~I~V~~~r~~ar~~~~~~Y~L~v~ 109 (111)
T 4g9s_B 74 HGQYSLPASGKYELRVLQTRNDARKNKTKKYNVDIQ 109 (111)
T ss_dssp TSCEECSSSEEEEEEEECCHHHHHTTCEEEEEEEEE
T ss_pred eEEEEecCCccEEEEEEeccchhccCCCcCEEEEEE
Confidence 4577899999999998643 33888899998874
No 22
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=24.09 E-value=54 Score=23.05 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.3
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHH
Q 007602 260 SDVILLKFLRARDFKVKDAFTML 282 (596)
Q Consensus 260 tD~~LLRFLRArkfdVekA~~~L 282 (596)
+......||.+++||++.|+..+
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 57888999999999999998765
No 23
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.77 E-value=76 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=23.0
Q ss_pred CCHHHHHHHhHhcCCCHHHHHHHHHH
Q 007602 259 RSDVILLKFLRARDFKVKDAFTMLKN 284 (596)
Q Consensus 259 ~tD~~LLRFLRArkfdVekA~~~L~~ 284 (596)
.+...+-.-|+++++|++.|+.+|-.
T Consensus 23 ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 57789999999999999999999853
No 24
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=21.00 E-value=82 Score=27.07 Aligned_cols=84 Identities=6% Similarity=0.070 Sum_probs=46.9
Q ss_pred cCCCCceEEEEeeCCCceeeeEEEEeeceeeeeeEeccCCCCCceEEEecceeccCCCCCCcccceE--EeCcCcEEEEE
Q 007602 486 VKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSF--KIVEPGKVVLT 563 (596)
Q Consensus 486 Vk~gs~~~Vei~V~egs~L~WeF~v~~~DI~FgV~f~~~~~~~~~~iV~~~~kv~s~~~~p~~~Gs~--~~~epG~yvL~ 563 (596)
|.++......+....|..|.=.+ ..+.++-|.|+ .|....... ..+.+. . -.++| ..+..|.|.|.
T Consensus 24 I~g~~~~~Y~~~a~aGQ~l~V~l-s~~~~~~f~I~-~P~~~~~~~------l~~g~~-~---~~~~~~g~LP~sG~Y~i~ 91 (114)
T 4dzg_A 24 FTGYDTIHYTLVAXAGQTMTVXI-GGSSNANFNVF-APGAQPGQA------EAIGRN-D---GDGQWQGALPASGXYLIQ 91 (114)
T ss_dssp CBTTCCEEEECCC-CCCEEEC-C-EESTTCEEEEE-CTTCCTTTS------CCSEEC-C---TTSCCEEECSSCC-CEEE
T ss_pred ecCCCceEEEEEecCCCEEEEEe-CCCCcEEEEEE-CCCCCcccc------eecccc-C---CcceEEEEecCCCcEEEE
Confidence 55555555555555676666666 44566677764 454322100 001111 0 12355 78999999999
Q ss_pred EECCCC---CCceEEEEEEEc
Q 007602 564 IDNPTS---KKKKLLYRLKTK 581 (596)
Q Consensus 564 fDNs~S---~sKkl~Y~i~v~ 581 (596)
.-.... +++...|++.|.
T Consensus 92 V~~~r~~ar~~~~~~Y~L~i~ 112 (114)
T 4dzg_A 92 VYQMRASARRGEQVPHSLAVS 112 (114)
T ss_dssp EECCHHHHHTTCBCCEECEEE
T ss_pred EEeccchhccCCCCCeEEEEE
Confidence 887654 777889988763
No 25
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=20.67 E-value=51 Score=29.40 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=16.5
Q ss_pred ccceEEeCcCcEEEEEEE
Q 007602 548 VCDSFKIVEPGKVVLTID 565 (596)
Q Consensus 548 ~~Gs~~~~epG~yvL~fD 565 (596)
..|.|+|+.+|+|.+.|.
T Consensus 38 sTG~FTaPv~G~Y~Fs~~ 55 (148)
T 4f3j_A 38 VTGKFTCQVPGVYYFAVH 55 (148)
T ss_dssp TTTEEECCSCEEEEEEEE
T ss_pred CCCeEECCcceEEEEEEE
Confidence 479999999999999985
No 26
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.59 E-value=1.2e+02 Score=22.60 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=27.6
Q ss_pred ChHHHHhcCCCCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHH
Q 007602 243 GPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNT 285 (596)
Q Consensus 243 ~~~~l~~W~~Pll~~~~tD~~LLRFLRArkfdVekA~~~L~~~ 285 (596)
.+..|+.-|. .++.-.++-|++.++|+++|...|..+
T Consensus 12 ~l~~L~~MGF------~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 12 QLEQLRSMGF------LNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHTC------CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCC------CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666673 234456899999999999999988754
No 27
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.32 E-value=88 Score=23.86 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.4
Q ss_pred CHHHHHHHhHhcCCCHHHHHHHH
Q 007602 260 SDVILLKFLRARDFKVKDAFTML 282 (596)
Q Consensus 260 tD~~LLRFLRArkfdVekA~~~L 282 (596)
+......||.+++||++.|+..+
T Consensus 29 ~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 29 SESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 47888999999999999998776
Done!