BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007603
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRH 333
+ +R+L G IIGK+G V+ ++ SGA I+ + ER++T++
Sbjct: 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAG-------- 54
Query: 334 SPVQNAAVLVFARSVEVEGQQGFSSGENKGDA----VAVSILVGADFVGCLTGSGSSAVS 389
P NA FA ++ + SS N A V + ++V A G L G G +
Sbjct: 55 -PT-NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIK 112
Query: 390 EMEDVTGTDIKLVG 403
E+ + TG +++ G
Sbjct: 113 EIRESTGAQVQVAG 126
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP-LTKSGERVVTISAL 326
V LR++ +IGK G ++ ++ ++GA + A L S ER +TI+ +
Sbjct: 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 142
>pdb|2ANR|A Chain A, Crystal Structure (Ii) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH
25NT RNA Hairpin
Length = 178
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Query: 276 LRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSGERVVTISA-LEYLDT 331
L++L + A IIGK G + LQ +GA I + + ERV I +E L+
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA 67
Query: 332 RHSPV--------QNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGS 383
H + QN A V + Q + N A V I+V G + G
Sbjct: 68 VHGFIAEKIREXPQNVAK---TEPVSILQPQ---TTVNPDRANQVKIIVPNSTAGLIIGK 121
Query: 384 GSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441
G + V + + +G ++L ++ G QN VV +SGE + + A+ ++ +++ +
Sbjct: 122 GGATVKAIXEQSGAWVQL--SQKPDGINLQNRVV-TVSGEPEQNRKAVELIIQKIQED 176
>pdb|2ANN|A Chain A, Crystal Structure (I) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH
25 NT RNA Hairpin
Length = 178
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Query: 276 LRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSGERVVTISA-LEYLDT 331
L++L + A IIGK G + LQ +GA I + + ERV I +E L+
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA 67
Query: 332 RHSPV--------QNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGS 383
H + QN A V + Q + N A V I+V G + G
Sbjct: 68 VHGFIAEKIREMPQNVAK---TEPVSILQPQ---TTVNPDRANQVKIIVPNSTAGLIIGK 121
Query: 384 GSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441
G + V + + +G ++L ++ G QN VV +SGE + + A+ ++ +++ +
Sbjct: 122 GGATVKAIMEQSGAWVQL--SQKPDGINLQNRVV-TVSGEPEQNRKAVELIIQKIQED 176
>pdb|1ZZI|A Chain A, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
pdb|1ZZI|B Chain B, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
pdb|1ZZJ|A Chain A, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZJ|B Chain B, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZJ|C Chain C, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZK|A Chain A, Crystal Structure Of The Third Kh Domain Of Hnrnp K At
0.95a Resolution
Length = 82
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 285 ASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLV 343
A IIGK G ++ +++ SGA I PL S +R++TI+ + +QNA L+
Sbjct: 18 AGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLL 70
>pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A
Single_stranded 10mer Dna Oligonucleotide
Length = 89
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 285 ASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLV 343
A IIGK G ++ +++ SGA I PL S +R++TI+ + +QNA L+
Sbjct: 25 AGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLL 77
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 357 SSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDV 416
S G+ G + + + D G + G G + ++ +G IK+ E + G D
Sbjct: 5 SYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEG---SEDR 59
Query: 417 VIQISGEYKNVQNA 430
+I I+G +QNA
Sbjct: 60 IITITGTQDQIQNA 73
>pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3)
Length = 89
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 285 ASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLV 343
A IIGK G ++ +++ SGA I PL S +R++TI+ + +QNA L+
Sbjct: 25 ARSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ------DQIQNAQYLL 77
>pdb|2P2R|A Chain A, Crystal Structure Of The Third Kh Domain Of Human Poly(C)-
Binding Protein-2 In Complex With C-Rich Strand Of Human
Telomeric Dna
Length = 76
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 288 IIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISA 325
IIG++GA + ++ SGA I A P+ S +R VTI+
Sbjct: 19 IIGRQGAKINEIRQXSGAQIKIANPVEGSTDRQVTITG 56
>pdb|3VKE|A Chain A, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|B Chain B, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|C Chain C, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|D Chain D, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
Length = 76
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISA 325
+ +R+L G IIGK+G V+ ++ SGA I+ + S ER++T++
Sbjct: 3 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNSPERIITLTG 52
>pdb|3Q2I|A Chain A, Crystal Structure Of The Wlba Dehydrognase From
Chromobactrium Violaceum In Complex With Nadh And
Udp-Glcnaca At 1.50 A Resolution
Length = 354
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 457 SGRVGGPALHKLH-----QSVALSPEFEQETIAVQGVDQFVLPLNRSQTLQTEGRRHATP 511
S RVGG A++++ + A+ E + + A V F PL ++T R ATP
Sbjct: 263 SVRVGGVAVNEIQHWEFSEPHAMDEEIKDASYATTSVYGFGHPLYYDNVIKTM-RGEATP 321
Query: 512 TTDGKPGSRMFE 523
TDG+ G + E
Sbjct: 322 ETDGREGLKSLE 333
>pdb|1ZTG|A Chain A, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|B Chain B, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|C Chain C, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|D Chain D, Human Alpha Polyc Binding Protein Kh1
Length = 74
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISA 325
+ +R+L G IIGK+G V+ ++ SGA I+ + ER++T++
Sbjct: 3 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTG 52
>pdb|1WVN|A Chain A, Crsytal Structure Of Domain 3 Of Human Alpha Polyc Binding
Protein
Length = 82
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 288 IIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTIS 324
IIG++GA + ++ SGA I A P+ S R VTI+
Sbjct: 20 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTIT 56
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 27/211 (12%)
Query: 375 DFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV 434
+F G +S + E D+T + GE + A +DV I +A ++V
Sbjct: 79 NFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTC-------HASAKV 131
Query: 435 VGRLRHNLKSGEILNEA---RPRSPSGRVGG-----PALHKLHQSVALSPEFEQETIAVQ 486
RL + +G+I+ + RPR + V P HK Q + E+ + +
Sbjct: 132 GTRLXFD-HNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQR-NIKKEYAKXVQVLH 189
Query: 487 GVDQFVLPLNRSQTLQT-EGRRHATPTTDGKPGSRMFEGSLELEKSL------VHLLPTD 539
+ S T Q +G+R T G P + GS+ +K L V L P+D
Sbjct: 190 AYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSD 249
Query: 540 MVDEVGPRSCSDGMTT---ASGEDNMLTEGV 567
V E SCSD + SG + T GV
Sbjct: 250 SVCEEYGLSCSDALHNLFYISGFISQCTHGV 280
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 212 NRPIEKVFYSNSS----DPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADR--DHPGL 265
N+PI +++YS+SS D + EF + P T N + H +S A + D +
Sbjct: 31 NKPIVRLYYSHSSKVAADSNGEFSDKYVKLTPTTVNQQVSMRFPHLASYPAFKLPDDVNV 90
Query: 266 DKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSG 317
D+ + + VA+ G +S + ++ A+ +S+ A LT SG
Sbjct: 91 DELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAAAEALSYGAQLTDSG 142
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 27/211 (12%)
Query: 375 DFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV 434
+F G +S + E D+T + GE + A +DV I +A ++V
Sbjct: 79 NFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTC-------HASAKV 131
Query: 435 VGRLRHNLKSGEILNEA---RPRSPSGRVGG-----PALHKLHQSVALSPEFEQETIAVQ 486
RL + +G+I+ + RPR + V P HK Q + E+ + +
Sbjct: 132 GTRLMFD-HNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQR-NIKKEYAKMVQVLH 189
Query: 487 GVDQFVLPLNRSQTLQT-EGRRHATPTTDGKPGSRMFEGSLELEKSL------VHLLPTD 539
+ S T Q +G+R T G P + GS+ +K L V L P+D
Sbjct: 190 AYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSD 249
Query: 540 MVDEVGPRSCSDGMTT---ASGEDNMLTEGV 567
V E SCSD + SG + T GV
Sbjct: 250 SVCEEYGLSCSDALHNLFYISGFISQCTHGV 280
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 212 NRPIEKVFYSNSS----DPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADR--DHPGL 265
N+PI +++YS+SS D + EF + P T N + H +S A + D +
Sbjct: 33 NKPIVRLYYSHSSKVAADSNGEFSDKYVKLTPTTVNQQVSMRFPHLASYPAFKLPDDVNV 92
Query: 266 DKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSG 317
D+ + + VA+ G +S + ++ A+ +S+ A LT SG
Sbjct: 93 DELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAAAEALSYGAQLTDSG 144
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 212 NRPIEKVFYSNSS----DPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADR--DHPGL 265
N+PI +++YS+SS D + EF + P T N + H +S A + D +
Sbjct: 194 NKPIVRLYYSHSSKVAADSNGEFSDKYVKLTPTTVNQQVSMRFPHLASYPAFKLPDDVNV 253
Query: 266 DKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSG 317
D+ + + VA+ G +S + ++ A+ +S+ A LT SG
Sbjct: 254 DELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAAAEALSYGAQLTDSG 305
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 212 NRPIEKVFYSNSS----DPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADR--DHPGL 265
N+PI +++YS+SS D + EF + P T N + H +S A + D +
Sbjct: 37 NKPIVRLYYSHSSKVAADSNGEFSDKYVKLTPTTVNQQVSMRFPHLASYPAFKLPDDVNV 96
Query: 266 DKKGRKQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSG 317
D+ + + VA+ G +S + ++ A+ +S+ A LT SG
Sbjct: 97 DELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAAAEALSYGAQLTDSG 148
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 27/211 (12%)
Query: 375 DFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV 434
+F G +S + E D+T + GE + A +DV I +A ++V
Sbjct: 79 NFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTC-------HASAKV 131
Query: 435 VGRLRHNLKSGEILNEA---RPRSPSGRVGG-----PALHKLHQSVALSPEFEQETIAVQ 486
RL + +G+I+ + RPR + V P HK Q + E+ + +
Sbjct: 132 GTRLMFD-HNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQR-NIKKEYAKMVQVLH 189
Query: 487 GVDQFVLPLNRSQTLQT-EGRRHATPTTDGKPGSRMFEGSLELEKSL------VHLLPTD 539
+ S T Q +G+R T G P + GS+ +K L V L P+D
Sbjct: 190 AYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSD 249
Query: 540 MVDEVGPRSCSDGMTT---ASGEDNMLTEGV 567
V E SCSD + SG + T GV
Sbjct: 250 SVCEEYGLSCSDALHNLFYISGFISQCTHGV 280
>pdb|2AXY|A Chain A, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|B Chain B, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|C Chain C, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|D Chain D, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2PQU|A Chain A, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|B Chain B, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|C Chain C, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|D Chain D, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PY9|A Chain A, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|B Chain B, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|C Chain C, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|D Chain D, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
Length = 73
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISA 325
+ +R+L G IIGK+G V+ + SGA I+ + ER++T++
Sbjct: 5 LTIRLLXHGKEVGSIIGKKGESVKKXREESGARINISE--GNCPERIITLAG 54
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 542 DEVGPRSCSDGMTTASGEDNMLTEGVSQLGLSDNIIGPSTLQLPKYGDIMFR 593
D+V R + TTA G++ LT VS+LG +D P+ P Y ++++
Sbjct: 585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNAD----PAKAIGPMYNQVVYQ 632
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,083,419
Number of Sequences: 62578
Number of extensions: 609153
Number of successful extensions: 1274
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 31
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)